RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13345
(276 letters)
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 71.4 bits (174), Expect = 1e-14
Identities = 23/128 (17%), Positives = 49/128 (38%), Gaps = 4/128 (3%)
Query: 34 IEWMSDKLMKSFEGARN-NPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLF 92
+EW+S L+K++E N +PF + EL+K P K+ VS ++
Sbjct: 297 LEWLSPSLLKTWENRNNTSPFEIGSRIKIIAPNELSKYPGSKICFVSEVG---ALINEVI 353
Query: 93 FQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVKKRIRLEGEELEEYQKKKDKE 152
+ +S + ++I+T + + D I + + + Y +
Sbjct: 354 IKVGNSEKTTLILTKPSFECASSLDKILEIVEQDERNWKTFPEDGKSFLCDNYISIDTIK 413
Query: 153 AKDKQEKE 160
+ ++E
Sbjct: 414 EEPLSKEE 421
Score = 32.5 bits (73), Expect = 0.053
Identities = 3/34 (8%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 209 VLVSTPDMECGFSRDLFFQWCSSPENSIIITNRN 242
+ + ++ + +S + ++I+T +
Sbjct: 339 ICFVSEVG--ALINEVIIKVGNSEKTTLILTKPS 370
>d1ob8a_ c.52.1.18 (A:) Holliday-junction resolvase SSO1176
{Sulfolobus solfataricus [TaxId: 2287]}
Length = 124
Score = 27.5 bits (61), Expect = 0.78
Identities = 10/69 (14%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
Query: 87 FSRDLFFQWCSSPENSIIITNRTSPGTLARDLIELGGNRTLTLQVK----KRIRLEGEEL 142
R+L N++ I S D+ GN L+++ K +++++ ++
Sbjct: 4 AERELVSILRGEGFNAVRIPTSNSSPNPLPDIFATKGNTLLSIECKSTWENKVKVKEHQV 63
Query: 143 EEYQKKKDK 151
+
Sbjct: 64 RKLLDFLSM 72
>d1dgja4 d.133.1.1 (A:311-906) Aldehyde oxidoreductase
{Desulfovibrio desulfuricans [TaxId: 876]}
Length = 596
Score = 28.5 bits (62), Expect = 1.1
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 62 HSLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWC 96
+A + PK +++ F
Sbjct: 88 LMIAPGLGLEFPKDLVLVQNTTGGTFGYKFSPTME 122
>d2glza1 d.81.3.1 (A:3-151) FwdE-like protein DSY1837 (Dhaf_2201)
{Desulfitobacterium hafniense [TaxId: 49338]}
Length = 149
Score = 27.1 bits (60), Expect = 1.7
Identities = 2/29 (6%), Positives = 12/29 (41%)
Query: 134 RIRLEGEELEEYQKKKDKEAKDKQEKEKI 162
+ + L+ + + + ++ + K+
Sbjct: 93 QFTVSPAVLDHLETLRHPDLSPRERQNKV 121
>d1f9aa_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 164
Score = 27.1 bits (59), Expect = 1.8
Identities = 22/138 (15%), Positives = 40/138 (28%), Gaps = 19/138 (13%)
Query: 6 MKSFEGARNNPFHFKHVKLCHSLAELAKIEWM---SDKLMKSFEGARNNPFHFKHVKLCH 62
++ F R PFH H+++ +AE + S + + E +
Sbjct: 1 LRGFIIGRFQPFHKGHLEVIKKIAEEVDEIIIGIGSAQKSHTLENPFTAGERILMITQSL 60
Query: 63 SLAELAKVPSPKVVLVST-----------PDMECGFSRDL----FFQWCSSPENSIIITN 107
+L P P + P + +S + F+ + N
Sbjct: 61 KDYDLTYYPIPIKDIEFNSIWVSYVESLTPPFDIVYSGNPLVRVLFEERGYEVKRPEMFN 120
Query: 108 RTSP-GTLARDLIELGGN 124
R GT R + G
Sbjct: 121 RKEYSGTEIRRRMLNGEK 138
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 25.2 bits (55), Expect = 2.4
Identities = 9/61 (14%), Positives = 20/61 (32%), Gaps = 5/61 (8%)
Query: 128 TLQVKKRIRLEGEELEEYQKKKDKEAKDK-QEKEKIPPHDTSFINELQLSDFKQTLQRNG 186
T+ ++ ++ K +E + K QE + P + + TL
Sbjct: 7 TMDGRQTHTVDSLSRLT----KVEELRRKIQELFHVEPGLQRLFYRGKQMEDGHTLFDYE 62
Query: 187 I 187
+
Sbjct: 63 V 63
>d1irud_ d.153.1.4 (D:) Proteasome alpha subunit (non-catalytic)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 243
Score = 26.5 bits (58), Expect = 3.2
Identities = 8/26 (30%), Positives = 18/26 (69%)
Query: 136 RLEGEELEEYQKKKDKEAKDKQEKEK 161
L EE+E+Y + +KE ++ ++K++
Sbjct: 218 ILNPEEIEKYVAEIEKEKEENEKKKQ 243
>d2fgea3 d.185.1.1 (A:272-539) Presequence protease 1, PREP1 {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 268
Score = 25.8 bits (56), Expect = 6.5
Identities = 7/38 (18%), Positives = 14/38 (36%), Gaps = 4/38 (10%)
Query: 126 TLTLQVKKRIRLEGEELEEYQKKKDKEAKDKQEKEKIP 163
+T + + EEL+ Q+ D + +P
Sbjct: 234 AMTEEDLAELARATEELKLKQETPD----PPEALRCVP 267
>d1ej2a_ c.26.1.3 (A:) Nicotinamide mononucleotide (NMN)
adenylyltransferase {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 167
Score = 25.2 bits (54), Expect = 6.8
Identities = 8/32 (25%), Positives = 14/32 (43%)
Query: 6 MKSFEGARNNPFHFKHVKLCHSLAELAKIEWM 37
M+ R PFH H+++ S+ E +
Sbjct: 1 MRGLLVGRMQPFHRGHLQVIKSILEEVDELII 32
Score = 24.8 bits (53), Expect = 9.2
Identities = 8/55 (14%), Positives = 18/55 (32%), Gaps = 3/55 (5%)
Query: 42 MKSFEGARNNPFHFKHVKLCHSLAELAKVPSPKVVLVSTPDMECGFSRDLFFQWC 96
M+ R PFH H+++ S+ E ++ + + +
Sbjct: 1 MRGLLVGRMQPFHRGHLQVIKSILEEVD---ELIICIGSAQLSHSIRDPFTAGER 52
>d1ul7a_ d.129.6.1 (A:) Map/microtubule affinity-regulating kinase 3
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 102
Score = 24.3 bits (53), Expect = 8.1
Identities = 6/36 (16%), Positives = 14/36 (38%)
Query: 175 LSDFKQTLQRNGIDCEFMDGVLICCRGTVAVRRVVL 210
+ + ++ L N D E + L+ C ++
Sbjct: 25 MREIRKVLGANNCDYEQRERFLLFCVHGDGHAENLV 60
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.408
Gapped
Lambda K H
0.267 0.0485 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,057,339
Number of extensions: 49305
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 216
Number of HSP's successfully gapped: 16
Length of query: 276
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 192
Effective length of database: 1,254,276
Effective search space: 240820992
Effective search space used: 240820992
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.4 bits)