BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13346
(238 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VPY|A Chain A, Crystal Structure Of Arabidopsis Ddl Fha Domain
Length = 145
Score = 126 bits (317), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/137 (47%), Positives = 90/137 (65%), Gaps = 7/137 (5%)
Query: 104 VIYYEPKDAKLPSQYKWRLYPFKNHQPL-PIMYIHRQSAYIIGRNAKVSDILIRHCSCSN 162
+++ EP +A+ PS+ +WRLY FK+ +PL + +HRQS Y+ GR +++DI H SCS
Sbjct: 2 LLFNEPPEARKPSE-RWRLYVFKDGEPLNEPLCLHRQSCYLFGRERRIADIPTDHPSCSK 60
Query: 163 QHAVLQYRELSLNN-----TRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFG 217
QHAV+QYRE + V+PY+ DL S N T++N I P Y ELFE D I+FG
Sbjct: 61 QHAVIQYREXEKEKPDGXXGKQVKPYIXDLGSTNKTYINESPIEPQRYYELFEKDTIKFG 120
Query: 218 LSTREYVLLHQNSECLQ 234
S+REYVLLH+NS L+
Sbjct: 121 NSSREYVLLHENSAELE 137
>pdb|4H87|A Chain A, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
pdb|4H87|B Chain B, Crystal Structure Of A Fha Domain Of Kanadaptin (Slc4a1ap)
From Homo Sapiens At 1.55 A Resolution
Length = 130
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 43/126 (34%), Positives = 58/126 (46%), Gaps = 11/126 (8%)
Query: 106 YYEPKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHA 165
Y EP P+ + L K L + S + GR + D+ + H S S HA
Sbjct: 8 YQEPPWGG-PATAPYSLETLKGGTILGTRSLKGTSYCLFGRLSGC-DVCLEHPSVSRYHA 65
Query: 166 VLQYR------ELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLS 219
VLQ+R E N YL DL S +GTF+N +I P TY + G V+ FG S
Sbjct: 66 VLQHRASGPDGECDSNGPGF---YLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGS 122
Query: 220 TREYVL 225
TR ++L
Sbjct: 123 TRLFIL 128
>pdb|2JPE|A Chain A, Fha Domain Of Nipp1
Length = 140
Score = 57.0 bits (136), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 134 MYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGT 193
+ I + Y+ GRN + D I H SCS HA L Y + + R +L+DL S +GT
Sbjct: 49 LIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHK------HLKRVFLIDLNSTHGT 102
Query: 194 FVNGMKIAPLTYVELFEGDVIEFGLSTREYVL 225
F+ +++ P ++ + FG STR Y L
Sbjct: 103 FLGHIRLEPHKPQQIPIDSTVSFGASTRAYTL 134
>pdb|3ELV|A Chain A, Crystal Structure Of Full-Length Yeast Pml1p
pdb|3ELV|B Chain B, Crystal Structure Of Full-Length Yeast Pml1p
Length = 205
Score = 51.2 bits (121), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 53/199 (26%), Positives = 86/199 (43%), Gaps = 48/199 (24%)
Query: 42 TSRKRKHSDKTTRT------PDDSP--VTECHDSSPVKIRREHASTFVASEDIAVKRKLD 93
+R H DK ++ PD SP + E ++ I +H + I+ +D
Sbjct: 11 NTRNYGHDDKKFKSQYIDIMPDFSPSGLLELESNNKEGIALKHVE---PQDAISPDNYMD 67
Query: 94 IL----KRSTLRPIVIYYEPKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAK 149
+L + T+ +VIY + K P W+ Y ++ +S Y++GR
Sbjct: 68 MLGLEARDRTMYELVIYRKNDKDKGP----WKRYD-----------LNGRSCYLVGRELG 112
Query: 150 --------------VSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFV 195
V+DI I + S QH V+Q+R N +++ Y+MDL S NGT +
Sbjct: 113 HSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFR----NVRGILKCYVMDLDSSNGTCL 168
Query: 196 NGMKIAPLTYVELFEGDVI 214
N + I Y+EL GDV+
Sbjct: 169 NNVVIPGARYIELRSGDVL 187
>pdb|3ELS|A Chain A, Crystal Structure Of Yeast Pml1p, Residues 51-204
Length = 158
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 33/130 (25%)
Query: 99 TLRPIVIYYEPKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAK--------- 149
T+ +VIY + K P W+ Y ++ +S Y++GR
Sbjct: 30 TMYELVIYRKNDKDKGP----WKRYD-----------LNGRSCYLVGRELGHSLDTDLDD 74
Query: 150 -----VSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLT 204
V+DI I + S QH V+Q+R N +++ Y+MDL S NGT +N + I
Sbjct: 75 RTEIVVADIGIPEETSSKQHCVIQFR----NVRGILKCYVMDLDSSNGTCLNNVVIPGAR 130
Query: 205 YVELFEGDVI 214
Y+EL GDV+
Sbjct: 131 YIELRSGDVL 140
>pdb|2JKD|A Chain A, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
pdb|2JKD|B Chain B, Structure Of The Yeast Pml1 Splicing Factor And Its
Integration Into The Res Complex
Length = 187
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 60/130 (46%), Gaps = 33/130 (25%)
Query: 99 TLRPIVIYYEPKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAK--------- 149
T+ +VIY + K P W+ Y ++ +S Y++GR
Sbjct: 53 TMYELVIYRKNDKDKGP----WKRYD-----------LNGRSCYLVGRELGHSLDTDLDD 97
Query: 150 -----VSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLT 204
V+DI I + S QH V+Q+R N +++ Y+MDL S NGT +N + I
Sbjct: 98 RTEIVVADIGIPEETSSKQHCVIQFR----NVRGILKCYVMDLDSSNGTCLNNVVIPGAR 153
Query: 205 YVELFEGDVI 214
Y+EL GDV+
Sbjct: 154 YIELRSGDVL 163
>pdb|1MZK|A Chain A, Nmr Structure Of Kinase-Interacting Fha Domain Of Kinase
Associated Protein Phosphatase, Kapp In Arabidopsis
Length = 139
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 14/89 (15%)
Query: 151 SDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTY----- 205
SD+ ++ S +HA +++ N+T+ + L+D+ S+NGT VN I+
Sbjct: 42 SDLALKDSEVSGKHA-----QITWNSTKF-KWELVDMGSLNGTLVNSHSISHPDLGSRKW 95
Query: 206 ---VELFEGDVIEFGLSTREYVLLHQNSE 231
VEL D+I G +T+ YV + +E
Sbjct: 96 GNPVELASDDIITLGTTTKVYVRISSQNE 124
>pdb|1UHT|A Chain A, Solution Structure Of The Fha Domain Of Arabidopsis
Thaliana Hypothetical Protein
Length = 118
Score = 37.7 bits (86), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 8/74 (10%)
Query: 144 IGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPL 203
+GR + ++I I+ S +H L+ S N + DL S NGT +N + P
Sbjct: 37 VGRIVRGNEIAIKDAGISTKH--LRIESDSGN------WVIQDLGSSNGTLLNSNALDPE 88
Query: 204 TYVELFEGDVIEFG 217
T V L +GDVI+ G
Sbjct: 89 TSVNLGDGDVIKLG 102
>pdb|2JQJ|A Chain A, Nmr Structure Of Yeast Dun1 Fha Domain
pdb|2JQL|A Chain A, Nmr Structure Of The Yeast Dun1 Fha Domain In Complex With
A Doubly Phosphorylated (Pt) Peptide Derived From Rad53
Scd1
Length = 151
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Query: 136 IHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFV 195
I ++ IGR ++ D+++ S HA ++ ++N + ++D KS NGTF+
Sbjct: 34 ITNRNVTTIGR-SRSCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVID-KSRNGTFI 91
Query: 196 NGMKIAPLTYVELFEGDVIEFGLS 219
NG ++ Y+ L GD I FG S
Sbjct: 92 NGNRLVKKDYI-LKNGDRIVFGKS 114
>pdb|3GQS|A Chain A, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
pdb|3GQS|B Chain B, Crystal Structure Of The Fha Domain Of Ct664 Protein From
Chlamydia Trachomatis
Length = 106
Score = 35.4 bits (80), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 32/59 (54%), Gaps = 7/59 (11%)
Query: 142 YIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKI 200
YI+G + +V+DI++ S S QHA ++ + N V + DL S NG V G KI
Sbjct: 27 YIVGSDPQVADIVLSDMSISRQHA-----KIIIGNDNSV--LIEDLGSKNGVIVEGRKI 78
>pdb|2PIE|A Chain A, Crystal Structure Of The Fha Domain Of Rnf8 In Complex
With Its Optimal Phosphopeptide
Length = 138
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 184 LMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGL 218
+MD KS+NG ++N ++ PL + +GD I+ G+
Sbjct: 68 IMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 102
>pdb|2CSW|A Chain A, Solution Structure Of The Fha Domain Of Human Ubiquitin
Ligase Protein Rnf8
Length = 145
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 13/35 (37%), Positives = 23/35 (65%)
Query: 184 LMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGL 218
+MD KS+NG ++N ++ PL + +GD I+ G+
Sbjct: 76 IMDNKSLNGVWLNRARLEPLRVYSIHQGDYIQLGV 110
>pdb|3OUN|A Chain A, Crystal Structure Of The Fhaa Fha Domain Complexed With
The Intracellular Domain Of Rv3910
Length = 157
Score = 32.0 bits (71), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 12/85 (14%)
Query: 135 YIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTF 194
Y R+ + IIGR + + + S +H +++ + +V L DL S NGT
Sbjct: 80 YQLREGSNIIGR-GQDAQFRLPDTGVSRRHLEIRW------DGQVA--LLADLNSTNGTT 130
Query: 195 VNGMKIAPLTYVELFEGDVIEFGLS 219
VN AP+ +L +GDVI G S
Sbjct: 131 VNN---APVQEWQLADGDVIRLGHS 152
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 123 YPFKNHQPLPIMYIHRQSAYIIGRNAKVS 151
Y H PLP++++ Q+ Y+ GR V
Sbjct: 283 YSIGGHLPLPVLFVEGQAGYLEGRGLPVG 311
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 123 YPFKNHQPLPIMYIHRQSAYIIGRNAKVS 151
Y H PLP++++ Q+ Y+ GR V
Sbjct: 283 YSIGGHLPLPVLFVEGQAGYLEGRGLPVG 311
>pdb|3ES2|A Chain A, Structure Of The C-Terminal Phosphatase Domain Of P.
Aeruginonsa Rssb
pdb|3ES2|B Chain B, Structure Of The C-Terminal Phosphatase Domain Of P.
Aeruginonsa Rssb
pdb|3F79|A Chain A, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|B Chain B, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|C Chain C, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|D Chain D, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|E Chain E, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
pdb|3F79|F Chain F, Structure Of Pseudo-Centered Cell Crystal Form Of The C-
Terminal Phosphatase Domain Of P. Aeruginosa Rssb
Length = 255
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 123 YPFKNHQPLPIMYIHRQSAYIIGRNAKVS 151
Y H PLP++++ Q+ Y+ GR V
Sbjct: 144 YSIGGHLPLPVLFVEGQAGYLEGRGLPVG 172
>pdb|2KKL|A Chain A, Solution Nmr Structure Of Fha Domain Of Mb1858 From
Mycobacterium Bovis. Northeast Structural Genomics
Consortium Target Mbr243c (24-155)
Length = 140
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 39/84 (46%), Gaps = 11/84 (13%)
Query: 151 SDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFE 210
SDI + + S +HA E L N ++D+ S+NGT+VN P+ L
Sbjct: 62 SDIFLDDVTVSRRHA-----EFRLENNEF---NVVDVGSLNGTYVN---REPVDSAVLAN 110
Query: 211 GDVIEFGLSTREYVLLHQNSECLQ 234
GD ++ G ++ H+ E L+
Sbjct: 111 GDEVQIGKFRLVFLTGHKQGEDLE 134
>pdb|3PO8|A Chain A, Structural And Functional Analysis Of
Phosphothreonine-Dependent Fha Domain Interactions
pdb|3POA|A Chain A, Structural And Functional Analysis Of
Phosphothreonine-Dependent Fha Domain Interactions
Length = 100
Score = 31.6 bits (70), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/34 (50%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Query: 184 LMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFG 217
L DL S NGT VN AP+ +L +GDVI G
Sbjct: 58 LADLNSTNGTTVNN---APVQEWQLADGDVIRLG 88
>pdb|2LC1|A Chain A, Rv0020c_fha Structure
Length = 100
Score = 31.6 bits (70), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 182 PYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLS 219
L DL S NGT VN AP+ +L +GDVI G S
Sbjct: 59 ALLADLNSTNGTTVNN---APVQEWQLADGDVIRLGHS 93
>pdb|2KFU|A Chain A, Pknb-Phosphorylated Rv1827
Length = 162
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 12/83 (14%)
Query: 135 YIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTF 194
++ Q+ GR+ SDI + + S +HA E L N ++D+ S+NGT+
Sbjct: 70 FLLDQAITSAGRHPD-SDIFLDDVTVSRRHA-----EFRLENNEF---NVVDVGSLNGTY 120
Query: 195 VNGMKIAPLTYVELFEGDVIEFG 217
VN P+ L GD ++ G
Sbjct: 121 VN---REPVDSAVLANGDEVQIG 140
>pdb|2NPL|X Chain X, Nmr Structure Of Card D2 Domain
Length = 96
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/40 (30%), Positives = 22/40 (55%), Gaps = 2/40 (5%)
Query: 105 IYYEPKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQSAYII 144
I EPK+ LP QY+W+ + Q +P ++ ++ +I
Sbjct: 21 IKCEPKEGSLPLQYEWQ--KLSDSQKMPTSWLAEMTSSVI 58
>pdb|3QKF|A Chain A, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|B Chain B, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|C Chain C, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|D Chain D, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|E Chain E, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|F Chain F, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|G Chain G, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
pdb|3QKF|H Chain H, Crystal Structure Of The Mutant P317a Of D-Mannonate
Dehydratase From Chromohalobacter Salexigens Complexed
With Mg And D-Gluconate
Length = 405
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 107 YEPKDAKLPSQYKWRLYPFKNHQP 130
YEP D+ LP+++ W + NH P
Sbjct: 171 YEPADSSLPAEHVWSTEKYLNHAP 194
>pdb|4F4R|A Chain A, Crystal Structure Of D-Mannonate Dehydratase Homolog From
Chromohalobacter Salexigens (Target Efi-502114), With
Bound Na, Ordered Loop
Length = 426
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 107 YEPKDAKLPSQYKWRLYPFKNHQP 130
YEP D+ LP+++ W + NH P
Sbjct: 192 YEPADSSLPAEHVWSTEKYLNHAP 215
>pdb|3BSM|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
pdb|3BSM|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
pdb|3BSM|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
pdb|3BSM|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens
Length = 413
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 107 YEPKDAKLPSQYKWRLYPFKNHQP 130
YEP D+ LP+++ W + NH P
Sbjct: 171 YEPADSSLPAEHVWSTEKYLNHAP 194
>pdb|3OW1|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3OW1|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg
pdb|3P93|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3P93|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
Mg,D-Mannonate And 2-Keto-3-Deoxy-D- Gluconate
pdb|3PK7|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3PK7|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens With Mg And Glycerol Bound
In The Active Site
pdb|3QKE|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|E Chain E, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|F Chain F, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|G Chain G, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3QKE|H Chain H, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With Mg And
D-Gluconate
pdb|3RGT|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
pdb|3RGT|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
pdb|3RGT|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
pdb|3RGT|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Chromohalobacter Salexigens Complexed With
D-Arabinohydroxamate
Length = 405
Score = 29.6 bits (65), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 10/24 (41%), Positives = 15/24 (62%)
Query: 107 YEPKDAKLPSQYKWRLYPFKNHQP 130
YEP D+ LP+++ W + NH P
Sbjct: 171 YEPADSSLPAEHVWSTEKYLNHAP 194
>pdb|1G3G|A Chain A, Nmr Structure Of The Fha1 Domain Of Yeast Rad53
Length = 164
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 184 LMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVL 225
L++ S NGT++NG K+ + L +GD I G+ +L
Sbjct: 100 LLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDIL 141
>pdb|4FI4|A Chain A, Crystal Structure Of Mannonate Dehydratase Prk15072
(Target Efi- 502214) From Caulobacter Sp. K31
pdb|4FI4|B Chain B, Crystal Structure Of Mannonate Dehydratase Prk15072
(Target Efi- 502214) From Caulobacter Sp. K31
pdb|4FI4|C Chain C, Crystal Structure Of Mannonate Dehydratase Prk15072
(Target Efi- 502214) From Caulobacter Sp. K31
Length = 425
Score = 28.1 bits (61), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 105 IYYEPKDAKLPSQYKWRLYPFKNHQP 130
++YEP D LP++ W + H P
Sbjct: 189 MFYEPADGNLPTENVWSTSKYLKHAP 214
>pdb|2JQI|A Chain A, Nmr Structure Of The Rad53 Fha1 Domain In Complex With A
Phosphothreonien Peptide Derived From Rad53 Scd1
pdb|2A0T|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Biological Relevant Phosphopeptide Derived From Madt1
Length = 151
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 184 LMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVL 225
L++ S NGT++NG K+ + L +GD I G+ +L
Sbjct: 87 LLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDIL 128
>pdb|1J4P|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T155) Peptide
pdb|1J4Q|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T192) Peptide
pdb|1K3N|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T155) Peptide
pdb|1K3Q|A Chain A, Nmr Structure Of The Fha1 Domain Of Rad53 In Complex With
A Rad9-Derived Phosphothreonine (At T192) Peptide
pdb|1J4O|A Chain A, Refined Nmr Structure Of The Fha1 Domain Of Yeast Rad53
pdb|1K3J|A Chain A, Refined Nmr Structure Of The Fha1 Domain Of Yeast Rad53
Length = 151
Score = 27.7 bits (60), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 184 LMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVL 225
L++ S NGT++NG K+ + L +GD I G+ +L
Sbjct: 87 LLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDIL 128
>pdb|2QJM|A Chain A, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|2QJM|B Chain B, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|2QJM|C Chain C, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|2QJM|D Chain D, Crystal Structure Of The K271e Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
Length = 402
Score = 27.7 bits (60), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 105 IYYEPKDAKLPSQYKWRLYPFKNHQP 130
+YYEP DA LPS W N+ P
Sbjct: 166 LYYEPADASLPSVTGWDTRKALNYVP 191
>pdb|3R4E|A Chain A, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|3R4E|B Chain B, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|3R4E|C Chain C, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
pdb|3R4E|D Chain D, Crystal Structure Of The A314p Mutant Of Mannonate
Dehydratase From Novosphingobium Aromaticivorans
Complexed With Mg And D-Mannonate
Length = 418
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 105 IYYEPKDAKLPSQYKWRLYPFKNHQP 130
+YYEP DA LPS W N+ P
Sbjct: 182 LYYEPADASLPSVTGWDTRKALNYVP 207
>pdb|2QJJ|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJJ|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJJ|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJJ|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans
pdb|2QJN|A Chain A, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
pdb|2QJN|B Chain B, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
pdb|2QJN|C Chain C, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
pdb|2QJN|D Chain D, Crystal Structure Of D-Mannonate Dehydratase From
Novosphingobium Aromaticivorans Complexed With Mg And
2-Keto-3-Deoxy-D-Gluconate
Length = 402
Score = 27.7 bits (60), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 105 IYYEPKDAKLPSQYKWRLYPFKNHQP 130
+YYEP DA LPS W N+ P
Sbjct: 166 LYYEPADASLPSVTGWDTRKALNYVP 191
>pdb|1G6G|A Chain A, X-Ray Structure Of The N-Terminal Fha Domain From S.
Cerevisiae Rad53p In Complex With A Phosphothreonine
Peptide At 1.6 A Resolution
pdb|1G6G|B Chain B, X-Ray Structure Of The N-Terminal Fha Domain From S.
Cerevisiae Rad53p In Complex With A Phosphothreonine
Peptide At 1.6 A Resolution
Length = 127
Score = 27.3 bits (59), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 23/42 (54%)
Query: 184 LMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVL 225
L++ S NGT++NG K+ + L +GD I G+ +L
Sbjct: 72 LLNDISTNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDIL 113
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.132 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,882,442
Number of Sequences: 62578
Number of extensions: 270003
Number of successful extensions: 845
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 811
Number of HSP's gapped (non-prelim): 35
length of query: 238
length of database: 14,973,337
effective HSP length: 96
effective length of query: 142
effective length of database: 8,965,849
effective search space: 1273150558
effective search space used: 1273150558
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)