Query psy13346
Match_columns 238
No_of_seqs 232 out of 1604
Neff 6.5
Searched_HMMs 29240
Date Fri Aug 16 17:05:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13346.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13346hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4h87_A Kanadaptin; FHA domain 100.0 7.8E-32 2.7E-36 215.4 14.2 123 103-227 5-130 (130)
2 3elv_A PRE-mRNA leakage protei 100.0 2.6E-30 9E-35 220.4 11.1 131 78-219 31-192 (205)
3 3els_A PRE-mRNA leakage protei 99.9 3E-28 1E-32 200.7 10.1 114 102-219 1-145 (158)
4 2jpe_A Nuclear inhibitor of pr 99.9 3.4E-28 1.2E-32 196.0 4.2 130 93-229 9-138 (140)
5 3gqs_A Adenylate cyclase-like 99.9 5.9E-24 2E-28 163.4 13.6 99 119-226 4-102 (106)
6 1uht_A Expressed protein; FHA 99.9 1.9E-23 6.4E-28 163.4 11.9 102 119-228 12-113 (118)
7 2xt9_B Putative signal transdu 99.9 4.8E-22 1.6E-26 154.9 14.3 98 115-226 8-105 (115)
8 3va4_A Mediator of DNA damage 99.9 1.9E-22 6.6E-27 161.3 11.2 103 119-229 24-129 (132)
9 2kb3_A Oxoglutarate dehydrogen 99.9 1E-21 3.4E-26 159.1 14.1 98 114-225 42-139 (143)
10 1mzk_A Kinase associated prote 99.9 5.3E-22 1.8E-26 159.7 12.1 105 119-230 7-123 (139)
11 2kfu_A RV1827 PThr 22; FHA dom 99.9 1.8E-21 6.1E-26 160.8 13.9 102 114-229 51-152 (162)
12 2jqj_A DNA damage response pro 99.9 2.6E-21 9.1E-26 157.6 13.9 108 119-230 17-126 (151)
13 1r21_A Antigen KI-67; beta san 99.9 1.8E-21 6.2E-26 154.2 10.7 97 119-227 12-109 (128)
14 3po8_A RV0020C protein, putati 99.9 1.2E-20 4.3E-25 143.2 13.7 92 120-226 6-97 (100)
15 1g3g_A Protien kinase SPK1; FH 99.8 8.5E-21 2.9E-25 156.8 11.8 103 115-227 30-147 (164)
16 3hx1_A SLR1951 protein; P74513 99.8 1.1E-20 3.7E-25 150.8 11.7 102 119-228 10-116 (131)
17 2pie_A E3 ubiquitin-protein li 99.8 2E-20 7E-25 150.2 13.3 90 119-218 9-102 (138)
18 1gxc_A CHK2, CDS1, serine/thre 99.8 1.8E-20 6.3E-25 152.4 12.0 102 119-228 29-141 (149)
19 1lgp_A Cell cycle checkpoint p 99.8 5.6E-21 1.9E-25 148.7 8.1 103 119-230 3-113 (116)
20 2csw_A Ubiquitin ligase protei 99.8 5.5E-21 1.9E-25 154.8 7.9 90 119-218 17-110 (145)
21 1dmz_A Protein (protein kinase 99.8 2.9E-20 1E-24 152.7 11.1 108 121-230 7-127 (158)
22 3oun_A Putative uncharacterize 99.8 6.1E-20 2.1E-24 150.8 11.6 91 120-223 66-156 (157)
23 1g6g_A Protein kinase RAD53; b 99.8 7E-19 2.4E-23 139.2 12.2 92 120-220 6-108 (127)
24 1qu5_A Protein kinase SPK1; FH 99.8 1.3E-19 4.3E-24 152.3 7.8 108 121-230 31-151 (182)
25 1wln_A Afadin; beta sandwich, 99.8 1E-18 3.4E-23 137.1 9.7 97 119-227 11-113 (120)
26 4ejq_A Kinesin-like protein KI 99.7 9.8E-18 3.4E-22 137.1 11.9 103 119-228 38-144 (154)
27 2ff4_A Probable regulatory pro 99.7 6.9E-18 2.4E-22 155.7 12.2 89 129-229 296-384 (388)
28 3huf_A DNA repair and telomere 99.7 5.7E-18 2E-22 152.1 9.5 110 119-229 1-115 (325)
29 3fm8_A Kinesin-like protein KI 99.7 3.9E-16 1.3E-20 123.4 12.2 94 119-226 26-122 (124)
30 4a0e_A YSCD, type III secretio 99.6 1.3E-14 4.5E-19 114.2 11.2 98 119-229 4-101 (123)
31 3uv0_A Mutator 2, isoform B; F 99.5 7.6E-14 2.6E-18 105.7 9.7 81 133-227 14-101 (102)
32 3i6u_A CDS1, serine/threonine- 99.4 3.7E-13 1.3E-17 124.0 11.1 96 119-222 9-114 (419)
33 3kt9_A Aprataxin; FHA domain, 99.4 2.4E-12 8.1E-17 98.4 12.0 90 129-228 12-101 (102)
34 4egx_A Kinesin-like protein KI 99.3 6.1E-11 2.1E-15 99.5 12.5 102 119-228 68-174 (184)
35 2brf_A Bifunctional polynucleo 99.2 2E-11 7E-16 94.3 8.7 97 119-227 9-106 (110)
36 1yj5_C 5' polynucleotide kinas 99.2 4.4E-11 1.5E-15 95.9 10.1 100 119-230 9-111 (143)
37 1ujx_A Polynucleotide kinase 3 99.1 4.8E-11 1.7E-15 93.3 4.9 98 119-228 16-116 (119)
38 1wv3_A Similar to DNA segregat 99.0 7.3E-10 2.5E-14 96.2 7.9 78 133-224 86-167 (238)
39 1wv3_A Similar to DNA segregat 83.3 2.3 8E-05 36.1 6.4 44 122-170 4-47 (238)
40 2k5p_A THis protein, thiamine- 60.9 3.8 0.00013 28.8 1.8 26 191-216 35-62 (78)
41 3hvz_A Uncharacterized protein 56.6 7.4 0.00025 27.3 2.7 23 192-216 43-65 (78)
42 2cu3_A Unknown function protei 56.3 5.9 0.0002 26.3 2.1 24 193-216 32-57 (64)
43 1p9k_A ORF, hypothetical prote 55.3 6 0.0002 27.4 2.0 33 190-223 45-77 (79)
44 2q5w_D Molybdopterin convertin 53.4 12 0.00043 25.2 3.5 23 192-216 48-70 (77)
45 1tyg_B YJBS; alpha beta barrel 52.6 6.9 0.00024 28.1 2.0 24 193-216 55-80 (87)
46 2kl0_A Putative thiamin biosyn 52.4 3.3 0.00011 28.7 0.2 25 192-216 32-58 (73)
47 2k6p_A Uncharacterized protein 51.6 14 0.00049 26.0 3.6 26 191-218 26-51 (92)
48 1dm9_A Hypothetical 15.5 KD pr 50.7 16 0.00056 28.0 4.1 35 190-226 33-69 (133)
49 2hj1_A Hypothetical protein; s 49.4 5.5 0.00019 29.3 1.0 29 186-217 55-83 (97)
50 3po0_A Small archaeal modifier 48.9 14 0.00049 25.7 3.2 24 191-216 59-82 (89)
51 1ryj_A Unknown; beta/alpha pro 48.0 16 0.00054 24.6 3.2 22 193-216 42-63 (70)
52 1fm0_D Molybdopterin convertin 45.5 18 0.00061 24.6 3.2 23 192-216 52-74 (81)
53 2k9x_A Tburm1, uncharacterized 45.1 6.6 0.00023 29.4 0.9 24 193-216 70-95 (110)
54 3mml_A Allophanate hydrolase s 44.0 29 0.001 30.8 5.1 39 188-226 78-119 (318)
55 1f0z_A THis protein; ubiquitin 41.1 5.3 0.00018 26.6 -0.1 24 193-216 34-59 (66)
56 3ega_A Pellino-2, protein pell 40.7 1.1E+02 0.0036 26.4 7.8 34 140-173 88-137 (263)
57 3dwg_C 9.5 kDa culture filtrat 40.7 16 0.00056 25.7 2.5 25 192-216 60-86 (93)
58 1wgk_A Riken cDNA 2900073H19 p 40.2 6.8 0.00023 29.5 0.3 24 193-216 76-101 (114)
59 1vjk_A Molybdopterin convertin 37.9 17 0.00057 26.1 2.2 22 193-216 70-91 (98)
60 3rpf_C Molybdopterin convertin 37.8 15 0.0005 24.9 1.7 24 192-216 44-67 (74)
61 2qjl_A URM1, ubiquitin-related 37.5 20 0.00067 25.8 2.5 24 193-216 67-92 (99)
62 2l52_A Methanosarcina acetivor 36.2 10 0.00035 27.4 0.7 28 189-216 63-92 (99)
63 1rws_A Hypothetical protein PF 36.1 9.2 0.00031 26.3 0.4 23 192-216 48-70 (77)
64 2g1e_A Hypothetical protein TA 34.2 15 0.00051 25.5 1.3 25 192-216 57-83 (90)
65 3oep_A Putative uncharacterize 32.6 45 0.0015 31.4 4.7 43 184-226 291-336 (494)
66 2eki_A DRG 1, developmentally- 30.9 15 0.00051 26.9 0.9 23 193-217 63-85 (93)
67 2kmm_A Guanosine-3',5'-BIS(dip 28.0 40 0.0014 22.1 2.7 22 193-216 39-60 (73)
68 1c05_A Ribosomal protein S4 de 24.6 49 0.0017 26.0 3.0 27 190-218 75-102 (159)
69 1h3f_A Tyrosyl-tRNA synthetase 20.3 1.1E+02 0.0036 28.1 4.7 35 189-224 392-428 (432)
No 1
>4h87_A Kanadaptin; FHA domain of PF00498, mRNA processing, nucleus, structural joint center for structural genomics, JCSG, protein structu initiative; HET: SO4; 1.55A {Homo sapiens}
Probab=99.98 E-value=7.8e-32 Score=215.42 Aligned_cols=123 Identities=33% Similarity=0.418 Sum_probs=107.7
Q ss_pred ccccCCCCCCCCCCCCceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccC---Cccc
Q psy13346 103 IVIYYEPKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLN---NTRV 179 (238)
Q Consensus 103 ~~~~~~P~~a~~P~~~~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~---~~~~ 179 (238)
...|.+|+||..|.. .|+|++++++..+..+.|..+..|+|||++ .|||+|++++|||+||+|+++..... ....
T Consensus 5 ~ppy~~P~wa~~p~~-~~~L~v~k~g~~~~~~~L~~~~~~~IGR~~-~~di~l~~~~VSr~HA~I~~r~~~~~~~~~~~~ 82 (130)
T 4h87_A 5 APPYQEPPWGGPATA-PYSLETLKGGTILGTRSLKGTSYCLFGRLS-GCDVCLEHPSVSRYHAVLQHRASGPDGECDSNG 82 (130)
T ss_dssp CCSCCCCTTBCCCCS-CCEEEEEETTEEEEEEECTTCSEEEEESST-TSSEECCCTTSCSSCEEEEEBCCCCCC------
T ss_pred CcCCCCCCCccCCCC-CEEEEEEECCeeeeeEEeCCCceEEEcCCc-CCCEEeCCCCcchhcEEEEEecccCccceeccC
Confidence 345899999999998 999999999999999999988989999995 69999999999999999988532110 0124
Q ss_pred ceEEEEeCCCCCceeECCEEcCCCceEEccCCCEEEEcCeeEEEEEec
Q psy13346 180 VRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLH 227 (238)
Q Consensus 180 ~~~~I~DlgS~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~ 227 (238)
..|+|+||+|+|||||||++|.++++++|++||+|+||.+++.|+|++
T Consensus 83 ~~~~l~Dl~StNGT~vNg~ri~~~~~~~L~~GD~I~~G~str~yvl~G 130 (130)
T 4h87_A 83 PGFYLYDLGSTHGTFLNKTRIPPRTYCRVHVGHVVRFGGSTRLFILQG 130 (130)
T ss_dssp CCEEEEECSCSSCEEETTEECCTTCCEECCTTCEEEETTCSEEEEEEC
T ss_pred CcceEeeCCCCCceEECCEECCCCceeECCCCCEEEECCceEEEEEcC
Confidence 579999999999999999999999999999999999999999999974
No 2
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Probab=99.96 E-value=2.6e-30 Score=220.44 Aligned_cols=131 Identities=30% Similarity=0.489 Sum_probs=96.8
Q ss_pred cccccchhhhhhhhhhhhhhcCCCC-ccccCCCCCCCCCCC------------CceEEEEeeCCC----CCceEEeecCC
Q psy13346 78 STFVASEDIAVKRKLDILKRSTLRP-IVIYYEPKDAKLPSQ------------YKWRLYPFKNHQ----PLPIMYIHRQS 140 (238)
Q Consensus 78 ~~~~~~~~~~~~~~l~~~e~n~~~G-~~~~~~P~~a~~P~~------------~~w~L~v~kg~~----~~~~~~l~~~~ 140 (238)
..|..|+.|+. |+|+++| +|+|.+|+||+.|.. ..|.|+|++++. .+..+.|..++
T Consensus 31 pnf~~sg~L~~-------~~n~~~gv~lky~eP~~a~~P~~~w~~~~~~~~~~~~~~L~v~k~g~k~~~~i~~~~L~~~s 103 (205)
T 3elv_A 31 PDFSPSGLLEL-------ESNNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRS 103 (205)
T ss_dssp ----------------------------CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGCTTCCSEEEECSSCS
T ss_pred CCCcccccchh-------hhcccccEEEeccCCCcccCCchHHhhcccccccCCceEEEEEeCCCcccccceEEEecCCC
Confidence 47888887765 9999999 999999999999854 147799999765 67799999889
Q ss_pred eEEEeeeC--------------CcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECCEEcCCCceE
Q psy13346 141 AYIIGRNA--------------KVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYV 206 (238)
Q Consensus 141 ~~~IGR~~--------------~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg~rI~~~~~~ 206 (238)
.|+|||++ ..|||+|++++|||+||+|++.... +...|+|+||+|+|||||||++|.++.++
T Consensus 104 ~y~IGR~~~~~~~~~~~~~~e~~~cDIvL~dp~VSR~HA~I~~~~~~----~~~~~~l~DLgStNGTfVNG~rI~~~~~~ 179 (205)
T 3elv_A 104 CYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFRNVR----GILKCYVMDLDSSNGTCLNNVVIPGARYI 179 (205)
T ss_dssp EEEEEECCCC---------CCCCCCSEEECCTTSCTTCEEEEEEEET----TEEEEEEEECSCSSCCEETTEECCBTSCE
T ss_pred ceeecccccccccccccccccCccceEEeCCCCCCcccEEEEEecCC----CceeEEEEeCCCCCCCeECCEECCCCcee
Confidence 99999984 3599999999999999999998521 12359999999999999999999999899
Q ss_pred EccCCCEEEEcCe
Q psy13346 207 ELFEGDVIEFGLS 219 (238)
Q Consensus 207 ~L~~GD~I~~G~~ 219 (238)
+|++||+|+||.+
T Consensus 180 ~L~~GD~I~fG~s 192 (205)
T 3elv_A 180 ELRSGDVLTLSEF 192 (205)
T ss_dssp ECCTTCEEESSSS
T ss_pred ECCCCCEEEECCC
Confidence 9999999999965
No 3
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain, forkhead-associated domai domain, PRE-mRNA retention and splicing; 1.80A {Saccharomyces cerevisiae}
Probab=99.95 E-value=3e-28 Score=200.65 Aligned_cols=114 Identities=32% Similarity=0.529 Sum_probs=97.1
Q ss_pred C-ccccCCCCCCCCCCC------------CceEEEEeeCCC----CCceEEeecCCeEEEeeeC--------------Cc
Q psy13346 102 P-IVIYYEPKDAKLPSQ------------YKWRLYPFKNHQ----PLPIMYIHRQSAYIIGRNA--------------KV 150 (238)
Q Consensus 102 G-~~~~~~P~~a~~P~~------------~~w~L~v~kg~~----~~~~~~l~~~~~~~IGR~~--------------~~ 150 (238)
| +|+|.+|++|+.|.. ..|+|++++++. .+..+.|..+..|+|||++ ..
T Consensus 1 ~~~l~~~ep~~a~~p~~~w~~~~~~~~~~~~~~l~v~k~g~~~~~~~~~~~L~~~~~~~IGR~~~~~~~~~~~~~n~~~~ 80 (158)
T 3els_A 1 GAMGKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELGHSLDTDLDDRTEIVV 80 (158)
T ss_dssp ----CCCCCTTBCCHHHHHHHTTCCGGGSCCEEEEEEEGGGGGGCCSEEEECSSCSEEEEEECCCC---------CCCCC
T ss_pred CceeEecCCccccCCchhhhccccCcccCCceEEEEEeCCccCcccceEEEecCCCceEecccccccccccccccccccc
Confidence 5 799999999999964 257799999876 6789999999999999994 35
Q ss_pred ccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECCEEcCCCceEEccCCCEEEEcCe
Q psy13346 151 SDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLS 219 (238)
Q Consensus 151 ~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~ 219 (238)
|||+|++++|||+||+|++.... +...|+|+||||+|||||||++|.++++++|++||+|+||.+
T Consensus 81 ~Di~l~~~~VSr~HA~I~~~~~~----~~~~~~l~Dl~StNGT~VNg~ri~~~~~~~L~~GD~I~~G~s 145 (158)
T 3els_A 81 ADIGIPEETSSKQHCVIQFRNVR----GILKCYVMDLDSSNGTCLNNVVIPGARYIELRSGDVLTLSEF 145 (158)
T ss_dssp CSEEECCTTSCSSCEEEEEEEET----TEEEEEEEECSCSSCCEETTEECCTTCCEECCTTEEEESSSC
T ss_pred CCEEcCCCCCCcccEEEEEEccC----CeeEEEEEeCCCCCccEECCEEcCCCceEEcCCCCEEEECCC
Confidence 99999999999999999998521 012499999999999999999999998999999999999964
No 4
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA splicing, transcription; NMR {Mus musculus}
Probab=99.94 E-value=3.4e-28 Score=196.04 Aligned_cols=130 Identities=28% Similarity=0.445 Sum_probs=115.4
Q ss_pred hhhhhcCCCCccccCCCCCCCCCCCCceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEee
Q psy13346 93 DILKRSTLRPIVIYYEPKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYREL 172 (238)
Q Consensus 93 ~~~e~n~~~G~~~~~~P~~a~~P~~~~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~ 172 (238)
.+.+.|.....+.|.+|.||..|.. .|+|.+++++..+..+.|..+..++|||+...|||+|+++.|||+||+|.++..
T Consensus 9 ~~~~~~~~~~~~~~~~P~~a~~p~~-~~~L~v~~g~~~g~~~~l~~~~~~~IGR~~~~~di~l~d~~VSr~Ha~i~~~~~ 87 (140)
T 2jpe_A 9 MAAAVNSGSSLPLFDCPTWAGKPPP-GLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDHQSCSRVHAALVYHKH 87 (140)
T ss_dssp CCCCCCSSSCCCSCCCCSSBCCCCS-SCBEEEESSSSEEEEECCSSCSBCCBSSCTTTSSSCCCCSSSCTTSBEEEEBSS
T ss_pred ccccccccCCccccCCCCcccCCCc-CEEEEEEcCCCcceEEEeCCCCeEEecCCCccCCEEeCCCCcChhheEEEEECC
Confidence 4457777778889999999999988 999999999998999999876679999995339999999999999999999841
Q ss_pred ccCCcccceEEEEeCCCCCceeECCEEcCCCceEEccCCCEEEEcCeeEEEEEecCC
Q psy13346 173 SLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQN 229 (238)
Q Consensus 173 ~~~~~~~~~~~I~DlgS~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~~~ 229 (238)
.+.|+|+||+|+|||||||++|.++.++.|++||+|+||...+.|++...+
T Consensus 88 ------~~~~~l~Dl~S~NGT~vNg~~l~~~~~~~L~~gd~i~~G~~~~~f~~~~~p 138 (140)
T 2jpe_A 88 ------LKRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFGASTRAYTLREKP 138 (140)
T ss_dssp ------SCCEEEECCSCSSCEESSSCEECSSSCCEECTTCCBBCSSCCCCBCCBCCC
T ss_pred ------CCcEEEEECCCCCCeEECCEECCCCccEECCCCCEEEECCceEEEEEecCC
Confidence 268999999999999999999998888999999999999999988887643
No 5
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Probab=99.91 E-value=5.9e-24 Score=163.37 Aligned_cols=99 Identities=25% Similarity=0.305 Sum_probs=88.7
Q ss_pred ceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECCE
Q psy13346 119 KWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGM 198 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg~ 198 (238)
.|.|.++.|...+..+.|..+..++|||+...|||+|+++.|||+||.|.+.. .+.|+|+|++|+|||||||+
T Consensus 4 ~~~L~v~~G~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~~-------~~~~~l~Dl~S~nGt~vng~ 76 (106)
T 3gqs_A 4 RFLLKVLAGANIGAEFHLDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN-------DNSVLIEDLGSKNGVIVEGR 76 (106)
T ss_dssp EEEEEECC-CCTTCEEEECTTCEEEEESCTTTCSEECCCTTSCSSCEEEEECT-------TSCEEEEECSCSSCCEETTE
T ss_pred eEEEEEEeCCCCcEEEEECCCCEEEEeECCCcCCEEeCCCCcchhhcEEEECC-------CCcEEEEECcCCCCeEECCE
Confidence 89999999999999999997777999999536999999999999999999973 35799999999999999999
Q ss_pred EcCCCceEEccCCCEEEEcCeeEEEEEe
Q psy13346 199 KIAPLTYVELFEGDVIEFGLSTREYVLL 226 (238)
Q Consensus 199 rI~~~~~~~L~~GD~I~~G~~~~~fvl~ 226 (238)
+|.. .+.|++||+|+||...+.|+-.
T Consensus 77 ~i~~--~~~L~~Gd~i~~G~~~~~~~~~ 102 (106)
T 3gqs_A 77 KIEH--QSTLSANQVVALGTTLFLLVDY 102 (106)
T ss_dssp ECSS--EEECCTTCCEEETTEEEEEEEE
T ss_pred ECCC--CeECCCCCEEEECCEEEEEEcc
Confidence 9986 5799999999999998777654
No 6
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif, structural genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.90 E-value=1.9e-23 Score=163.37 Aligned_cols=102 Identities=27% Similarity=0.290 Sum_probs=91.7
Q ss_pred ceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECCE
Q psy13346 119 KWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGM 198 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg~ 198 (238)
.|.|.++.+...+..+.|..+..++|||.+..|||.|+++.|||+||+|.++ .+.|+|+|++|+|||||||+
T Consensus 12 ~l~L~v~~g~~~g~~~~l~~~~~~~iGR~~~~~di~l~d~~vSr~Ha~i~~~--------~~~~~l~Dl~S~nGT~vng~ 83 (118)
T 1uht_A 12 SLRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESD--------SGNWVIQDLGSSNGTLLNSN 83 (118)
T ss_dssp EEEEEESSSTTTTCBCCBCTTCCEEEESSSTTCSEECCSSSSCTTCEEEEEC--------SSSEEEECCCCSSCCEESSS
T ss_pred eEEEEEEeCCCCCcEEEECCCCEEEEcCCCCCCCEEeCCCCCchHHeEEEEE--------CCEEEEEECCCCCCeEECCE
Confidence 7899999999888899998767799999944699999999999999999987 46899999999999999999
Q ss_pred EcCCCceEEccCCCEEEEcCeeEEEEEecC
Q psy13346 199 KIAPLTYVELFEGDVIEFGLSTREYVLLHQ 228 (238)
Q Consensus 199 rI~~~~~~~L~~GD~I~~G~~~~~fvl~~~ 228 (238)
+|.++.++.|++||+|+||...+.|+.+..
T Consensus 84 ~l~~~~~~~L~~gd~i~lG~~~~~~~~~~~ 113 (118)
T 1uht_A 84 ALDPETSVNLGDGDVIKLGEYTSILVNFVS 113 (118)
T ss_dssp BCCTTCEEECCTTEEEEETTTEEEEEEEEC
T ss_pred ECCCCCeEEcCCCCEEEECCeEEEEEEEec
Confidence 999988999999999999999877665543
No 7
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium smegmatis}
Probab=99.88 E-value=4.8e-22 Score=154.91 Aligned_cols=98 Identities=23% Similarity=0.281 Sum_probs=86.4
Q ss_pred CCCCceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCcee
Q psy13346 115 PSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTF 194 (238)
Q Consensus 115 P~~~~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~ 194 (238)
|.. .|.|.++.+...+..+.|. ...++|||.+ .|||+|+++.|||+||+|.+. .+.|+|+|++|+||||
T Consensus 8 p~~-~~~L~v~~g~~~g~~~~l~-~~~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~--------~~~~~l~Dl~S~nGt~ 76 (115)
T 2xt9_B 8 PSG-SALLVVKRGPNAGSRFLLD-QPTTSAGRHP-DSDIFLDDVTVSRRHAEFRLE--------GGEFQVVDVGSLNGTY 76 (115)
T ss_dssp CCS-CEEEEEEESTTTTCEEEEC-SSEEEEESST-TSSEECCSTTSCSSCEEEEEE--------TTEEEEEECSCSSCEE
T ss_pred CCC-cEEEEEEeCCCCCeEEEEC-CCCEEECCCC-CCCEEeCCcccChhheEEEEE--------CCEEEEEECCCCCCeE
Confidence 344 7889999999999999988 4569999995 699999999999999999997 5689999999999999
Q ss_pred ECCEEcCCCceEEccCCCEEEEcCeeEEEEEe
Q psy13346 195 VNGMKIAPLTYVELFEGDVIEFGLSTREYVLL 226 (238)
Q Consensus 195 VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl~ 226 (238)
|||++|. .+.|++||+|+||...+.|...
T Consensus 77 vng~~i~---~~~L~~gd~i~iG~~~l~~~~~ 105 (115)
T 2xt9_B 77 VNREPVD---SAVLANGDEVQIGKFRLVFLTG 105 (115)
T ss_dssp ETTEECS---EEEECTTCEEEETTEEEEEEC-
T ss_pred ECCEEcc---eEECCCCCEEEECCEEEEEEeC
Confidence 9999998 5799999999999987666543
No 8
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO; 1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A* 3uot_A* 3un0_B
Probab=99.88 E-value=1.9e-22 Score=161.32 Aligned_cols=103 Identities=23% Similarity=0.244 Sum_probs=90.3
Q ss_pred ceEEEEeeCCC-CCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECC
Q psy13346 119 KWRLYPFKNHQ-PLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197 (238)
Q Consensus 119 ~w~L~v~kg~~-~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg 197 (238)
...|.++.++. .+..+.|. ...++|||.+ .|||+|+++.|||+||+|.+... ++.|+|+||+|+|||||||
T Consensus 24 ~g~L~v~~g~~~~g~~~~L~-~~~~~IGR~~-~~di~l~d~~VSr~HA~i~~~~~------~~~~~l~Dl~S~NGT~vNg 95 (132)
T 3va4_A 24 IGQLRLFSGTHGPERDFPLY-LGKNVVGRSP-DCSVALPFPSISKQHAVIEISAW------NKAPILQDCGSLNGTQIVK 95 (132)
T ss_dssp SEEEEECCBTTBSCEEEEEC-SEEEEEESST-TSSEECCCTTSCTTCEEEEECST------TSCCEEEECSCSSCEEETT
T ss_pred cEEEEEEeCCCCCceEEEEC-CCCEEEccCC-CCCEEeCCCCcChhHEEEEEEcC------CCEEEEEECCCCCCeEECC
Confidence 34799999988 88898887 5569999995 69999999999999999998732 3589999999999999999
Q ss_pred EE--cCCCceEEccCCCEEEEcCeeEEEEEecCC
Q psy13346 198 MK--IAPLTYVELFEGDVIEFGLSTREYVLLHQN 229 (238)
Q Consensus 198 ~r--I~~~~~~~L~~GD~I~~G~~~~~fvl~~~~ 229 (238)
++ |.++.++.|++||+|+||...+.|.....+
T Consensus 96 ~~i~l~~~~~~~L~~GD~I~lG~~~l~f~~~~~p 129 (132)
T 3va4_A 96 PPRVLPPGVSHRLRDQELILFADFPCQYHRLDVP 129 (132)
T ss_dssp TTEEECTTCCEECCTTCEEEETTEEEEEEECCCC
T ss_pred EEcccCCCCEEECCCCCEEEECCEEEEEEECCCC
Confidence 97 677788999999999999999999887654
No 9
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain, kinase substrate, GARA, FHA, cytoplasm, phosphoprotein; HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Probab=99.87 E-value=1e-21 Score=159.14 Aligned_cols=98 Identities=23% Similarity=0.282 Sum_probs=87.6
Q ss_pred CCCCCceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCce
Q psy13346 114 LPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGT 193 (238)
Q Consensus 114 ~P~~~~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT 193 (238)
.|.. .|.|.++.|...+..+.|. ...++|||.. .|||+|+++.|||+||+|.+. .+.|+|+|++|+|||
T Consensus 42 ~p~~-~~~L~v~~G~~~g~~~~L~-~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~--------~~~~~l~DlgS~NGT 110 (143)
T 2kb3_A 42 LPAG-SALLVVKRGPNAGARFLLD-QPTTTAGRHP-ESDIFLDDVTVSRRHAEFRIN--------EGEFEVVDVGSLNGT 110 (143)
T ss_dssp CSSS-CEEEEEEESTTTTCEEEEC-SSEEEESSCT-TCSBCCCCSSCCSSSEEEEEE--------TTEEEEEESCCSSCC
T ss_pred CCCc-cEEEEEEeCCCCCeEEEeC-CCCeeccCCC-CCCEEeCCCCcChhhEEEEEE--------CCEEEEEECCCcCCe
Confidence 3444 8999999999999999887 5569999995 699999999999999999997 568999999999999
Q ss_pred eECCEEcCCCceEEccCCCEEEEcCeeEEEEE
Q psy13346 194 FVNGMKIAPLTYVELFEGDVIEFGLSTREYVL 225 (238)
Q Consensus 194 ~VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl 225 (238)
||||++|. .+.|++||+|+||...+.|..
T Consensus 111 ~VNg~~i~---~~~L~~GD~I~iG~~~l~f~~ 139 (143)
T 2kb3_A 111 YVNREPRN---AQVMQTGDEIQIGKFRLVFLA 139 (143)
T ss_dssp EETTEECS---EEECCTTEEEEETTEEEEEEE
T ss_pred EECCEEcc---eEECCCCCEEEECCEEEEEEe
Confidence 99999998 579999999999998777764
No 10
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Probab=99.87 E-value=5.3e-22 Score=159.67 Aligned_cols=105 Identities=25% Similarity=0.300 Sum_probs=92.0
Q ss_pred ceEEEEeeCCCCCceEEeecC----CeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCcee
Q psy13346 119 KWRLYPFKNHQPLPIMYIHRQ----SAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTF 194 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~~~----~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~ 194 (238)
.|.|.++.|...+..|.|... ..++|||.. .|||+|+++.|||+||+|.++.. .+.|+|+||+|+||||
T Consensus 7 ~~~L~v~~G~~~g~~~~l~~~~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~~~------~~~~~l~DlgS~NGT~ 79 (139)
T 1mzk_A 7 WLFLEVIAGPAIGLQHAVNSTSSSKLPVKLGRVS-PSDLALKDSEVSGKHAQITWNST------KFKWELVDMGSLNGTL 79 (139)
T ss_dssp EEEEEECSSTTCSCEEEECTTCSTTCSEEEESSS-SCSEECCCTTSSSEEEEEEEETT------TTEEEEEETTCSSCCE
T ss_pred eEEEEEEeCCCCCeEEEecCCCCccceEEeeCCC-CCCEEeCCCCCChHHcEEEEECC------CCEEEEEECCCCCCEE
Confidence 689999999999999999864 369999995 69999999999999999999841 2479999999999999
Q ss_pred ECCEEcCC--------CceEEccCCCEEEEcCeeEEEEEecCCC
Q psy13346 195 VNGMKIAP--------LTYVELFEGDVIEFGLSTREYVLLHQNS 230 (238)
Q Consensus 195 VNg~rI~~--------~~~~~L~~GD~I~~G~~~~~fvl~~~~~ 230 (238)
|||++|.. +.++.|++||+|+||...+.|+......
T Consensus 80 vNg~~i~~~~~~~~~~~~~~~L~~GD~I~iG~~~~~~~~~~~~~ 123 (139)
T 1mzk_A 80 VNSHSISHPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQN 123 (139)
T ss_dssp ETTEESSCCCTTTCCCCCCEECCTTEEEECSSSCEEEEEEEECC
T ss_pred ECCEECcCcccccccCCceEECCCCCEEEECCEEEEEEEcCCCc
Confidence 99999984 6689999999999999999887765443
No 11
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular interaction, glutamate metabolism, phosphoprotein, protein binding; HET: TPO; NMR {Mycobacterium tuberculosis} PDB: 2kkl_A
Probab=99.87 E-value=1.8e-21 Score=160.79 Aligned_cols=102 Identities=23% Similarity=0.287 Sum_probs=89.7
Q ss_pred CCCCCceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCce
Q psy13346 114 LPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGT 193 (238)
Q Consensus 114 ~P~~~~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT 193 (238)
.|.. .|.|++..|...+..|.|. ...++|||.. .|||+|+++.|||+||+|.+. .+.|+|+||+|+|||
T Consensus 51 ~p~~-~~~L~v~~G~~~g~~~~L~-~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~--------~~~~~l~DlgS~NGT 119 (162)
T 2kfu_A 51 LPPG-SALLVVKRGPNAGSRFLLD-QAITSAGRHP-DSDIFLDDVTVSRRHAEFRLE--------NNEFNVVDVGSLNGT 119 (162)
T ss_dssp CCSS-CCEEEEEESTTCSCEEETT-SSEEEEESCS-SSSEESTTTSSSSCSEEEEEE--------TTEEEEECCCCSSCE
T ss_pred CCCc-cEEEEEEeCCCCCeEEEEC-CCCEEECCCC-CCCEEECCCCcChhhEEEEEE--------CCEEEEEECCCCCCe
Confidence 3444 7899999999999999887 5669999995 699999999999999999997 568999999999999
Q ss_pred eECCEEcCCCceEEccCCCEEEEcCeeEEEEEecCC
Q psy13346 194 FVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQN 229 (238)
Q Consensus 194 ~VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~~~ 229 (238)
||||++|. .+.|++||+|+||...+.|......
T Consensus 120 ~VNg~~i~---~~~L~~GD~I~iG~~~l~f~~~~~~ 152 (162)
T 2kfu_A 120 YVNREPVD---SAVLANGDEVQIGKFRLVFLTGPKQ 152 (162)
T ss_dssp EETTBCCS---EEECCSSCEEEETTEEEEEECSCSS
T ss_pred EECCEEcc---eEECCCCCEEEECCEEEEEEeCCcc
Confidence 99999998 4799999999999988777765443
No 12
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide, cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae} PDB: 2jql_A*
Probab=99.86 E-value=2.6e-21 Score=157.59 Aligned_cols=108 Identities=24% Similarity=0.281 Sum_probs=85.3
Q ss_pred ce-EEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECC
Q psy13346 119 KW-RLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197 (238)
Q Consensus 119 ~w-~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg 197 (238)
.| .|.++. ...+..+.|..+..++|||.. .|||+|.++.|||.||+|.+...+..+...+.|+|+|+ |+|||||||
T Consensus 17 ~~~~L~~~~-~~~g~~~~l~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~~~~~~~~~~l~Dl-S~NGT~VNg 93 (151)
T 2jqj_A 17 CLGHLVNLI-PGKEQKVEITNRNVTTIGRSR-SCDVILSEPDISTFHAEFHLLQMDVDNFQRNLINVIDK-SRNGTFING 93 (151)
T ss_dssp EEEEEEEEE-TTEEEEEEEECCSCEEEESST-TSSEECCCTTCCTTSEEEEEEEEEETTEEEEEEEEEEC-CSSCEEETT
T ss_pred ceEEEEEec-CCCceEEEEcCCCeEEeCCCC-CCCEEECCCCCccccCEEEEecccCCcCcCCEEEEEEC-CCCCeEECC
Confidence 56 455554 456778888866779999995 69999999999999999999421110001568999999 999999999
Q ss_pred EEcCCCceEEccCCCEEEEcCe-eEEEEEecCCC
Q psy13346 198 MKIAPLTYVELFEGDVIEFGLS-TREYVLLHQNS 230 (238)
Q Consensus 198 ~rI~~~~~~~L~~GD~I~~G~~-~~~fvl~~~~~ 230 (238)
++|..+ ++.|++||+|.||.+ .+.|.+.....
T Consensus 94 ~~i~~~-~~~L~~GD~I~lG~~~~~~f~~~~~~~ 126 (151)
T 2jqj_A 94 NRLVKK-DYILKNGDRIVFGKSCSFLFKYASSSS 126 (151)
T ss_dssp EECCSS-CEEECSSEEEEETTTEEEEEEECSSCC
T ss_pred EEcCCC-ceECCCCCEEEECCCcEEEEEEcCCCc
Confidence 999988 899999999999994 67777765543
No 13
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP: b.26.1.2 PDB: 2aff_A*
Probab=99.86 E-value=1.8e-21 Score=154.21 Aligned_cols=97 Identities=29% Similarity=0.266 Sum_probs=84.1
Q ss_pred ceEEEEee-CCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECC
Q psy13346 119 KWRLYPFK-NHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197 (238)
Q Consensus 119 ~w~L~v~k-g~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg 197 (238)
.+.|+++. ++..+..+.|. ...++|||+. .|||+|+++.||++||+|.+. .+.|+|+|++|+|||||||
T Consensus 12 ~~~L~v~~~~~~~g~~~~l~-~~~~~IGR~~-~~di~l~d~~VSr~Ha~i~~~--------~~~~~l~Dl~S~nGt~vNg 81 (128)
T 1r21_A 12 TRRLVTIKRSGVDGPHFPLS-LSTCLFGRGI-ECDIRIQLPVVSKQHCKIEIH--------EQEAILHNFSSTNPTQVNG 81 (128)
T ss_dssp CEEEEEEEETTEEEEEEECC-SSEEEEESST-TSSEECCCTTSCTTCEEEEEC--------SSCEEECCCCSSSCCEETT
T ss_pred ceEEEEEeCCCCCceEEEEC-CCCEEECCCC-CCCEEECCCCCChhHEEEEEE--------CCEEEEEECCCCCCEEECC
Confidence 56788877 46777888887 4669999995 699999999999999999997 4689999999999999999
Q ss_pred EEcCCCceEEccCCCEEEEcCeeEEEEEec
Q psy13346 198 MKIAPLTYVELFEGDVIEFGLSTREYVLLH 227 (238)
Q Consensus 198 ~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~ 227 (238)
++|.. ++.|++||+|.||...+.|....
T Consensus 82 ~~i~~--~~~L~~Gd~i~iG~~~~~~~~~~ 109 (128)
T 1r21_A 82 SVIDE--PVRLKHGDVITIIDRSFRYENES 109 (128)
T ss_dssp EECSS--CEECCTTEEEECSSCEEEEEEC-
T ss_pred EECCC--cEEcCCCCEEEECCEEEEEEeCC
Confidence 99984 68999999999999887776653
No 14
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA domain, synthetic peptide, peptide binding protein; 1.50A {Mycobacterium tuberculosis} SCOP: b.26.1.0 PDB: 3poa_A* 2lc1_A
Probab=99.85 E-value=1.2e-20 Score=143.21 Aligned_cols=92 Identities=25% Similarity=0.274 Sum_probs=78.9
Q ss_pred eEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECCEE
Q psy13346 120 WRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMK 199 (238)
Q Consensus 120 w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg~r 199 (238)
..|.+..+ .+..+.|. ...++|||++ .|||.|+++.|||+||.|.++ ++.|+|+|++|+|||||||++
T Consensus 6 ~~l~~~~g--~g~~~~l~-~~~~~IGR~~-~~di~l~d~~vSr~Ha~i~~~--------~~~~~l~Dl~S~nGt~vng~~ 73 (100)
T 3po8_A 6 VTLQLDDG--SGRTYQLR-EGSNIIGRGQ-DAQFRLPDTGVSRRHLEIRWD--------GQVALLADLNSTNGTTVNNAP 73 (100)
T ss_dssp EEEEECSS--SCCEEECC-SEEEEEESST-TCSEECCCTTSCSSCEEEEEC--------SSCEEEEECSCSSCCEETTEE
T ss_pred EEEEEECC--CCcEEEEC-CCCEEEeCCC-CCCEECCCCCcChhhCEEEEe--------CCEEEEEECCCCCCEEECCEE
Confidence 34555444 47788887 4459999995 799999999999999999987 468999999999999999999
Q ss_pred cCCCceEEccCCCEEEEcCeeEEEEEe
Q psy13346 200 IAPLTYVELFEGDVIEFGLSTREYVLL 226 (238)
Q Consensus 200 I~~~~~~~L~~GD~I~~G~~~~~fvl~ 226 (238)
+. ++.|++||+|.||...+.|.+.
T Consensus 74 i~---~~~L~~gd~i~iG~~~~~~~~~ 97 (100)
T 3po8_A 74 VQ---EWQLADGDVIRLGHSEIIVRMH 97 (100)
T ss_dssp CS---EEECCTTCEEEETTEEEEEEEE
T ss_pred Cc---eEECCCCCEEEECCEEEEEEEE
Confidence 97 5799999999999998888875
No 15
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide, phosphoprotein, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A* 1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Probab=99.84 E-value=8.5e-21 Score=156.75 Aligned_cols=103 Identities=24% Similarity=0.304 Sum_probs=88.3
Q ss_pred CCCCceEEEEeeCCCCCceEEeecC----------CeEEEeeeCCcccEEeCCC-cccccceEEEEEeeccCCcccceEE
Q psy13346 115 PSQYKWRLYPFKNHQPLPIMYIHRQ----------SAYIIGRNAKVSDILIRHC-SCSNQHAVLQYRELSLNNTRVVRPY 183 (238)
Q Consensus 115 P~~~~w~L~v~kg~~~~~~~~l~~~----------~~~~IGR~~~~~DI~l~d~-sVSr~Ha~I~~~~~~~~~~~~~~~~ 183 (238)
+.. .|+|+++.|...+..+.|... ..++|||++ .|||+|+++ .|||.||+|.+.. ++.|+
T Consensus 30 ~~~-~~~L~v~~G~~~g~~~~l~~~~v~~~~~~~~~~~~IGR~~-~~di~l~d~~~vSr~Ha~I~~~~-------~g~~~ 100 (164)
T 1g3g_A 30 ENI-VCRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNP-ACDYHLGNISRLSNKHFQILLGE-------DGNLL 100 (164)
T ss_dssp SSC-CEEEECSSSSSCCEEECCCHHHHHHCSSSCCEEEEEESSS-SSSEECCCCTTTTSSCEEEEECS-------TTCEE
T ss_pred CCc-cEEEEEecCCCCCeEEEeccccccccccccCCcEEECCCC-CCCEEeCCcCCcChhHEEEEECC-------CCCEE
Confidence 444 789999999999999888743 369999996 599999998 6999999999952 46899
Q ss_pred EEeCCCCCceeECCEEcCCCceEEccCCCEEEEcCe----eEEEEEec
Q psy13346 184 LMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLS----TREYVLLH 227 (238)
Q Consensus 184 I~DlgS~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~----~~~fvl~~ 227 (238)
|+|+ |+|||||||++|..+.++.|++||+|.||.+ .+.|++..
T Consensus 101 l~Dl-S~NGT~vNg~~i~~~~~~~L~~GD~I~iG~~~~~~~~~f~~~~ 147 (164)
T 1g3g_A 101 LNDI-STNGTWLNGQKVEKNSNQLLSQGDEITVGVGVESDILSLVIFI 147 (164)
T ss_dssp EEEC-CSSCEEETTEEECTTEEEECCTTCEEEESCSSTTSCEEEEEEE
T ss_pred EEEC-CCCCeEECCEEcCCCCceEcCCCCEEEECCCCCCCcEEEEEEe
Confidence 9999 9999999999999988999999999999995 44555544
No 16
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein, NESG, structural genomics, PSI-2, protein structure initiative; 2.50A {Synechocystis SP}
Probab=99.84 E-value=1.1e-20 Score=150.82 Aligned_cols=102 Identities=23% Similarity=0.244 Sum_probs=82.3
Q ss_pred ceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeC-----CCCCce
Q psy13346 119 KWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDL-----KSMNGT 193 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~Dl-----gS~NGT 193 (238)
.+.|.++.++.....+.|. +..++|||.. .|||+|+++.|||.||+|.+....+ +...|+|+|+ +|+|||
T Consensus 10 ~~~~lvv~~~~~~~~~~l~-~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~---g~~~~~l~Dl~~~~~~S~NGT 84 (131)
T 3hx1_A 10 QEHILIILDDAGRREVLLT-ETFYTIGRSP-RADIRIKSQFVSRIHAVLVRKSSDD---VQAAYRIIDGDEDGQSSVNGL 84 (131)
T ss_dssp CEEEEEEEETTEEEEEEEC-SSEEEEESST-TSSEECCCSSSCTTCEEEEEC---------CCEEEEESCTTSCCCSSCE
T ss_pred cceEEEEECCCCcEEEEEC-CCCEEECCCC-CCCEEECCCCcChhheEEEEEccCC---CceEEEEEECCCCCCCCCCce
Confidence 5677777777777788887 5569999995 6999999999999999999874211 1225999999 799999
Q ss_pred eECCEEcCCCceEEccCCCEEEEcCeeEEEEEecC
Q psy13346 194 FVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQ 228 (238)
Q Consensus 194 ~VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~~ 228 (238)
||||++|.. +.|++||+|+||...+.|+....
T Consensus 85 ~vNg~~i~~---~~L~~GD~I~iG~~~~~~~~~~~ 116 (131)
T 3hx1_A 85 MINGKKVQE---HIIQTGDEIVMGPQVSVRYEYRR 116 (131)
T ss_dssp EETTEEESE---EECCTTCEEECSTTCEEEEEEEC
T ss_pred EECCEEeEe---EECCCCCEEEECCEEEEEEEEec
Confidence 999999985 79999999999998766665543
No 17
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase, signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP: b.26.1.2
Probab=99.84 E-value=2e-20 Score=150.19 Aligned_cols=90 Identities=23% Similarity=0.362 Sum_probs=77.9
Q ss_pred ceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCc----ccccceEEEEEeeccCCcccceEEEEeCCCCCcee
Q psy13346 119 KWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCS----CSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTF 194 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~s----VSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~ 194 (238)
.|.|... +.....+.|..+..++|||++ .|||.|.++. |||+||+|.+.. .+.|+|+|++|+||||
T Consensus 9 ~w~l~~~--G~~~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~-------~g~~~l~Dl~S~NGT~ 78 (138)
T 2pie_A 9 SWCLRRV--GMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP-------EGQWTIMDNKSLNGVW 78 (138)
T ss_dssp EEEEEET--TCSSCBEEECTTCCEEEESSS-SSSEECCCSSCTTSSCSSCEEEEECT-------TSCEEEEECSCSSCEE
T ss_pred cEEEEEe--CCCCCEEEecCCCeEEECCCC-CCCEEeCCCCcCCCCChhHeEEEEcC-------CCcEEEEECCCCCCeE
Confidence 6876543 334457788767779999995 6999999998 999999999952 4689999999999999
Q ss_pred ECCEEcCCCceEEccCCCEEEEcC
Q psy13346 195 VNGMKIAPLTYVELFEGDVIEFGL 218 (238)
Q Consensus 195 VNg~rI~~~~~~~L~~GD~I~~G~ 218 (238)
|||++|.++.++.|++||+|.||.
T Consensus 79 vNg~~l~~~~~~~L~~GD~I~lG~ 102 (138)
T 2pie_A 79 LNRARLEPLRVYSIHQGDYIQLGV 102 (138)
T ss_dssp ETTEECCTTCCEECCTTCEEEESC
T ss_pred ECCEEcCCCCcEECCCCCEEEECC
Confidence 999999998899999999999998
No 18
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2; phosphoprotein-binding domain, checkpoint kinase, transferase; HET: TPO; 2.7A {Homo sapiens} SCOP: b.26.1.2
Probab=99.84 E-value=1.8e-20 Score=152.37 Aligned_cols=102 Identities=22% Similarity=0.275 Sum_probs=80.7
Q ss_pred ce-EEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCc---------ccccceEEEEEeeccCCcccceEEEEeCC
Q psy13346 119 KW-RLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCS---------CSNQHAVLQYRELSLNNTRVVRPYLMDLK 188 (238)
Q Consensus 119 ~w-~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~s---------VSr~Ha~I~~~~~~~~~~~~~~~~I~Dlg 188 (238)
.| +|+.+.++. ..+.|. ...++|||++ .|||+|+++. |||+||.|.+..... ....|+|+|+
T Consensus 29 ~w~~L~~~~~~~--~~i~L~-~~~~~IGR~~-~~di~l~d~~~~~~~~~~~VSr~Ha~I~~~~~~~---~~~~~~i~D~- 100 (149)
T 1gxc_A 29 PWARLWALQDGF--ANLECV-NDNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPK---NSYIAYIEDH- 100 (149)
T ss_dssp CCEEEEECSTTC--CCEEEC-SSEEEEESST-TCSEECCCGGGGGSSGGGGSCTTCEEEEEEECTT---SSEEEEEEEC-
T ss_pred eeEEEEEcCCCC--ceEEEC-CCCEEecCCC-CCCEEECCccccccccCCcCchhheEEEEECCCC---ceeEEEEEEC-
Confidence 56 666666533 346776 6679999995 7999999885 999999999985211 0138999997
Q ss_pred CCCceeECCEEcCCCceEEccCCCEEEEcCee-EEEEEecC
Q psy13346 189 SMNGTFVNGMKIAPLTYVELFEGDVIEFGLST-REYVLLHQ 228 (238)
Q Consensus 189 S~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~~-~~fvl~~~ 228 (238)
|+|||||||++|.++..+.|++||+|.||... ..|++...
T Consensus 101 StNGT~VNg~~i~~~~~~~L~~GD~I~lG~~~~~~f~f~d~ 141 (149)
T 1gxc_A 101 SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDL 141 (149)
T ss_dssp CSSCEEETTEECCTTCEEECCTTEEEEESSTTCEEEEEEET
T ss_pred CCCCeEECCEECCCCCeEECCCCCEEEECCCCCeEEEEEEC
Confidence 99999999999999999999999999999964 45665544
No 19
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB: 1lgq_A
Probab=99.83 E-value=5.6e-21 Score=148.73 Aligned_cols=103 Identities=23% Similarity=0.324 Sum_probs=84.9
Q ss_pred ce-EEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCC-cccccceEEEEEeeccCCcccceEEEEeCCCCCceeEC
Q psy13346 119 KW-RLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHC-SCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVN 196 (238)
Q Consensus 119 ~w-~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~-sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VN 196 (238)
.| +|+.+.+......+.|. ...++|||.+ .|||+|.+. .|||+||+|.++.. .+.|+|+| +|+||||||
T Consensus 3 ~wg~L~~~~~~~~~~~~~l~-~~~~~iGR~~-~~di~l~~~~~vSr~Ha~i~~~~~------~~~~~l~D-~S~NGt~vn 73 (116)
T 1lgp_A 3 PWGRLLRLGAEEGEPHVLLR-KREWTIGRRR-GCDLSFPSNKLVSGDHCRIVVDEK------SGQVTLED-TSTSGTVIN 73 (116)
T ss_dssp CCEEECCTTCCSSSCCEEEC-SSEEEEESST-TSSEECTTCTTSCTTCEEEEECTT------TCCEEEEE-CSSSCCCCC
T ss_pred CEEEEEEeCCCCCccEEEEC-CCCEEECCCC-CCCEEeCCCCCCChhHeEEEEECC------CCeEEEEE-CCcCCcEEC
Confidence 35 57667666667788887 6669999995 699999764 89999999999631 45899999 999999999
Q ss_pred CEEcCCCceEEccCCCEEEEcCe------eEEEEEecCCC
Q psy13346 197 GMKIAPLTYVELFEGDVIEFGLS------TREYVLLHQNS 230 (238)
Q Consensus 197 g~rI~~~~~~~L~~GD~I~~G~~------~~~fvl~~~~~ 230 (238)
|++|.++.++.|++||+|.||.. ...|++.....
T Consensus 74 g~~l~~~~~~~L~~GD~i~~G~~~~~~~~~~~f~f~~~~~ 113 (116)
T 1lgp_A 74 KLKVVKKQTCPLQTGDVIYLVYRKNEPEHNVAYLYESLSE 113 (116)
T ss_dssp CCCCCCSSCCCCCTTCEEEEECCSSCGGGCEEEECCCSCC
T ss_pred CEEcCCCCcEECCCCCEEEEeccCCCCCceEEEEEEcccc
Confidence 99999988899999999999986 46677665543
No 20
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring finger protein 8, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.26.1.2
Probab=99.83 E-value=5.5e-21 Score=154.81 Aligned_cols=90 Identities=23% Similarity=0.345 Sum_probs=78.6
Q ss_pred ceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCc----ccccceEEEEEeeccCCcccceEEEEeCCCCCcee
Q psy13346 119 KWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCS----CSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTF 194 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~s----VSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~ 194 (238)
.|.|. . .+.....+.|..+..++|||.+ .|||+|+++. |||+||+|.+.. .+.|+|+||+|+||||
T Consensus 17 ~w~L~-~-~G~~~~~~~l~~~~~~~IGR~~-~~di~l~~~~~~~~VSr~Ha~i~~~~-------~g~~~l~Dl~S~NGT~ 86 (145)
T 2csw_A 17 SWCLR-R-VGMSAGWLLLEDGCEVTVGRGF-GVTYQLVSKICPLMISRNHCVLKQNP-------EGQWTIMDNKSLNGVW 86 (145)
T ss_dssp EEEEC-C-TTCSCCBEECCTTCCEEEESST-TSSEECCCSSCGGGSCTTCEEEEECT-------TSCEEEEBSSCSSCEE
T ss_pred cEEEE-E-eCCCCCeEEeCCCCcEEECCCC-CCCEEECCCCcCCCCChhHeEEEEcC-------CCeEEEEECCCCCCeE
Confidence 78887 3 4444456778777789999995 6999999998 999999999953 4579999999999999
Q ss_pred ECCEEcCCCceEEccCCCEEEEcC
Q psy13346 195 VNGMKIAPLTYVELFEGDVIEFGL 218 (238)
Q Consensus 195 VNg~rI~~~~~~~L~~GD~I~~G~ 218 (238)
|||++|.+++++.|++||+|+||.
T Consensus 87 vNg~~i~~~~~~~L~~GD~I~iG~ 110 (145)
T 2csw_A 87 LNRARLEPLRVYSIHQGDYIQLGV 110 (145)
T ss_dssp ESSCBCCBTCCEECCSSCCEEESC
T ss_pred ECCEECCCCccEECCCCCEEEECC
Confidence 999999998899999999999998
No 21
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel beta-sheets, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A* 1k2m_A* 1k2n_A*
Probab=99.83 E-value=2.9e-20 Score=152.72 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=87.1
Q ss_pred EEEEeeCCCCCceEEeecC-CeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCC-------cccceEEEEeCCCCCc
Q psy13346 121 RLYPFKNHQPLPIMYIHRQ-SAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNN-------TRVVRPYLMDLKSMNG 192 (238)
Q Consensus 121 ~L~v~kg~~~~~~~~l~~~-~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~-------~~~~~~~I~DlgS~NG 192 (238)
.|.+..+......+.|... ..++|||.+ .|||+|+++.|||+||+|.+....... .+.+.|+|+|+ |+||
T Consensus 7 ~L~p~~~~~~~~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~Ha~I~~~~~~~g~~~~~~~~~~~~~~~l~Dl-StNG 84 (158)
T 1dmz_A 7 TLKPLPDSIIQESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNV 84 (158)
T ss_dssp EEEECTTSSCCCCEEETTSCSCEEEESST-TSSEECCCTTSCSSSEEEEEEECCCCCCCSSCSCSSCEEEEEEEC-STTC
T ss_pred EEEeCCCCccceEEEEcCCCceEEECCCC-CCCEEeCCCCcChHHeEEEEecCccccccccccccccccEEEEEC-CcCC
Confidence 5666666666677778643 359999995 699999999999999999997521100 00168999999 9999
Q ss_pred eeECCEEcCCCceEEccCCCEEEE-----cCeeEEEEEecCCC
Q psy13346 193 TFVNGMKIAPLTYVELFEGDVIEF-----GLSTREYVLLHQNS 230 (238)
Q Consensus 193 T~VNg~rI~~~~~~~L~~GD~I~~-----G~~~~~fvl~~~~~ 230 (238)
|||||++|.++.++.|++||+|+| |...+.|.+.....
T Consensus 85 T~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~~~~~ 127 (158)
T 1dmz_A 85 SYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDT 127 (158)
T ss_dssp CEETTEECCSSEEEECCSSCCEESCCCTTTTCCCCEEEECSCC
T ss_pred eEECCEEcCCCceEEcCCCCEEEEeecCCCCEEEEEEEEeCCC
Confidence 999999999998999999999999 99999998876543
No 22
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr kinase, pseudokinase, FHA domain, REG phosphorylation; HET: TPO; 2.71A {Mycobacterium tuberculosis}
Probab=99.82 E-value=6.1e-20 Score=150.84 Aligned_cols=91 Identities=24% Similarity=0.271 Sum_probs=76.1
Q ss_pred eEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECCEE
Q psy13346 120 WRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMK 199 (238)
Q Consensus 120 w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg~r 199 (238)
|.|.+.-....+..+.|. ...++|||.. .|||+|+++.|||.||+|.++ .+.|+|+||+|+|||||||++
T Consensus 66 ~~l~L~v~~g~g~~~~L~-~~~~~IGR~~-~~dI~L~d~~VSr~HA~I~~~--------~~~~~l~DlgStNGT~VNG~~ 135 (157)
T 3oun_A 66 TSVTLQLDDGSGRTYQLR-EGSNIIGRGQ-DAQFRLPDTGVSRRHLEIRWD--------GQVALLADLNSTNGTTVNNAP 135 (157)
T ss_dssp -CCEEEETTTTCCEEECC-SEEEEEESST-TCSEECCCTTSCTTCEEEEEC--------SSCEEEEECSCSSCCEETTEE
T ss_pred cEEEEEEcCCCCeEEEEC-CCcEEEEeCC-CCCEEeCCCCcChhHEEEEEE--------CCEEEEEECCCCCCeEECCEE
Confidence 334443333457788887 4459999995 699999999999999999997 458999999999999999999
Q ss_pred cCCCceEEccCCCEEEEcCeeEEE
Q psy13346 200 IAPLTYVELFEGDVIEFGLSTREY 223 (238)
Q Consensus 200 I~~~~~~~L~~GD~I~~G~~~~~f 223 (238)
|. .+.|++||+|+||...+.|
T Consensus 136 i~---~~~L~~GD~I~lG~~~l~f 156 (157)
T 3oun_A 136 VQ---EWQLADGDVIRLGHSEIIV 156 (157)
T ss_dssp CS---EEECCTTCEEEETTEEEEE
T ss_pred Cc---eEECCCCCEEEECCEEEEE
Confidence 97 5799999999999987766
No 23
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.79 E-value=7e-19 Score=139.25 Aligned_cols=92 Identities=26% Similarity=0.344 Sum_probs=75.1
Q ss_pred eEEEEeeCCCCCceEEeec----------CCeEEEeeeCCcccEEeCCC-cccccceEEEEEeeccCCcccceEEEEeCC
Q psy13346 120 WRLYPFKNHQPLPIMYIHR----------QSAYIIGRNAKVSDILIRHC-SCSNQHAVLQYRELSLNNTRVVRPYLMDLK 188 (238)
Q Consensus 120 w~L~v~kg~~~~~~~~l~~----------~~~~~IGR~~~~~DI~l~d~-sVSr~Ha~I~~~~~~~~~~~~~~~~I~Dlg 188 (238)
.+|.+..+......+.... +..++|||++ .|||.|+++ .|||.||.|.+.. .+.|+|+|+
T Consensus 6 ~~L~~~~~~~p~~~l~~~~~~i~~~~~~~~~~~~IGR~~-~~di~l~~~~~vSr~Ha~i~~~~-------~g~~~l~Dl- 76 (127)
T 1g6g_A 6 CRVICTTGQIPIRDLSADISQVLKEKRSIKKVWTFGRNP-ACDYHLGNISRLSNKHFQILLGE-------DGNLLLNDI- 76 (127)
T ss_dssp EEEEESSSSSCCEEEEECHHHHHHCCSSCCEEEEEESST-TSSEECCSCTTSCSSCEEEEECT-------TSCEEEEEC-
T ss_pred EEEEECCCCCCceEeeccccceeeeeecCCCCEEECCCC-CCCEEeCCCCCCChhHeEEEECC-------CCcEEEEEC-
Confidence 3566666665544444331 2369999996 599999997 5999999999952 468999999
Q ss_pred CCCceeECCEEcCCCceEEccCCCEEEEcCee
Q psy13346 189 SMNGTFVNGMKIAPLTYVELFEGDVIEFGLST 220 (238)
Q Consensus 189 S~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~~ 220 (238)
|+|||||||++|.+++++.|++||+|.||...
T Consensus 77 S~NGT~vNg~~l~~~~~~~L~~Gd~I~lG~~~ 108 (127)
T 1g6g_A 77 STNGTWLNGQKVEKNSNQLLSQGDEITVGVGV 108 (127)
T ss_dssp CSSCCEETTEECCTTCCEECCTTCEEEECTTS
T ss_pred CcCCeEECCEEcCCCCeEEcCCCCEEEECCCc
Confidence 99999999999999889999999999999863
No 24
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces cerevisiae} SCOP: b.26.1.2
Probab=99.79 E-value=1.3e-19 Score=152.27 Aligned_cols=108 Identities=15% Similarity=0.200 Sum_probs=83.9
Q ss_pred EEEEeeCCCCCceEEeecC-CeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCC-------cccceEEEEeCCCCCc
Q psy13346 121 RLYPFKNHQPLPIMYIHRQ-SAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNN-------TRVVRPYLMDLKSMNG 192 (238)
Q Consensus 121 ~L~v~kg~~~~~~~~l~~~-~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~-------~~~~~~~I~DlgS~NG 192 (238)
.|....+......+.|... ..++|||++ .|||+|+++.|||.||+|.+...+... .+.+.|+|+|+ |+||
T Consensus 31 ~L~~~~~~~~~~~i~L~~~~~~~~IGR~~-~~di~l~d~~VSr~HA~I~~~~~~~g~~~~e~~~~~~~~~~l~Dl-StNG 108 (182)
T 1qu5_A 31 TLKPLPDSIIQESLEIQQGVNPFFIGRSE-DCNCKIEDNRLSRVHCFIFKKRHAVGKSMYESPAQGLDDIWYCHT-GTNV 108 (182)
T ss_dssp EECCCTTSSSCSCCCBTTCCSSEEESSST-TSSSCCCCTTSCSSCEEEEEECCCCCSSCCSSCCCSCCEEEECCC-SSSC
T ss_pred EEEeCCCCCcceEEEEcCCCceEEECCCC-CCCEEECCCCcChHHeEEEEecCccccccccccccccceEEEEEC-CcCC
Confidence 3434444444556667643 349999995 699999999999999999997421100 00168999999 9999
Q ss_pred eeECCEEcCCCceEEccCCCEEEE-----cCeeEEEEEecCCC
Q psy13346 193 TFVNGMKIAPLTYVELFEGDVIEF-----GLSTREYVLLHQNS 230 (238)
Q Consensus 193 T~VNg~rI~~~~~~~L~~GD~I~~-----G~~~~~fvl~~~~~ 230 (238)
|||||++|..+.++.|++||+|.| |...+.|.+.....
T Consensus 109 T~VNg~ri~~~~~~~L~~GD~I~l~~d~~G~~~l~f~~~~~~~ 151 (182)
T 1qu5_A 109 SYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVIGFKVEINDT 151 (182)
T ss_dssp CEETTEECCSSEEEECCTTBCCEEEEEGGGTEEEECCEEESCC
T ss_pred eEECCEEcCCCcceEcCCCCEEEEEEcCCCCEEEEEEEEeCCC
Confidence 999999999998999999999999 99998888765443
No 25
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.77 E-value=1e-18 Score=137.09 Aligned_cols=97 Identities=15% Similarity=0.113 Sum_probs=77.0
Q ss_pred ceEEEEeeCC-CC----CceEEeecCCeEEEeee-CCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCc
Q psy13346 119 KWRLYPFKNH-QP----LPIMYIHRQSAYIIGRN-AKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNG 192 (238)
Q Consensus 119 ~w~L~v~kg~-~~----~~~~~l~~~~~~~IGR~-~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NG 192 (238)
..+|+.+.+. .. +..+.|. ...++|||. ...|||+|.++.||++||.|.+. .+.|+|+|++|+||
T Consensus 11 ~p~Lv~l~~d~~~s~~~~~~~~L~-~~~~~IGr~r~~~~di~l~~~~vSr~Ha~i~~~--------~~~~~l~dl~S~ng 81 (120)
T 1wln_A 11 LPYLVELSPDGSDSRDKPKLYRLQ-LSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNM--------DGVVTVTPRSMDAE 81 (120)
T ss_dssp CCEEEEECSSSCCCSSCCCEEECC-SEEEECSSSCCSTTCCCCCCTTCCSSCEEEEES--------SSCEEEEESCSSSC
T ss_pred cCEEEEeCCChhhccCccEEEEEC-CCCEEECCCCCCCCcEEECCCCCchhheEEEEc--------CCEEEEEECCCCCC
Confidence 3457776653 22 5677776 456899973 24799999999999999999986 46899999999999
Q ss_pred eeECCEEcCCCceEEccCCCEEEEcCeeEEEEEec
Q psy13346 193 TFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLH 227 (238)
Q Consensus 193 T~VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~ 227 (238)
|||||++|.. .+.|++||+|.||... .|++..
T Consensus 82 t~vNg~~i~~--~~~L~~GD~I~iG~~~-~~~f~~ 113 (120)
T 1wln_A 82 TYVDGQRISE--TTMLQSGMRLQFGTSH-VFKFVD 113 (120)
T ss_dssp EEETSCBCSS--CEEECTTCEEEETTTE-EEEEEC
T ss_pred EEECCEEcCC--CEECCCCCEEEECCce-EEEEEC
Confidence 9999999984 6899999999999942 344443
No 26
>4ejq_A Kinesin-like protein KIF1A; homodimer, FHA domain, transport protein; 1.89A {Homo sapiens} PDB: 2eh0_A 2g1l_A
Probab=99.74 E-value=9.8e-18 Score=137.13 Aligned_cols=103 Identities=18% Similarity=0.223 Sum_probs=78.6
Q ss_pred ceEEEEeeCCCC--CceEEeecCCeEEEeeeC--CcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCcee
Q psy13346 119 KWRLYPFKNHQP--LPIMYIHRQSAYIIGRNA--KVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTF 194 (238)
Q Consensus 119 ~w~L~v~kg~~~--~~~~~l~~~~~~~IGR~~--~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~ 194 (238)
..+|+-+..+.. ...++......++|||.. ..|||+|.++.||++||+|.++... ....+++.|++|+||||
T Consensus 38 ~PhLvnLn~Dp~ls~~lvy~L~~g~t~IGR~~~~~~~DI~L~~~~Vs~~H~~i~~~~~~----~~~~~~~~d~~S~ngt~ 113 (154)
T 4ejq_A 38 TPHLVNLNEDPLMSECLLYYIKDGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRG----GSEAVVTLEPCEGADTY 113 (154)
T ss_dssp SCEEEECCCCTTCSSEEEEECCSEEEEEECSSCSSCCSEECCCTTCCSEEEEEEEECTT----SSSCEEEEEECTTCCEE
T ss_pred CceEEEecCCcccCceEEEEeCCCCEEEcCCCCCCCCCEEECCCCcccccEEEEEecCC----CceeEEEEecCCCCceE
Confidence 446776665432 234444446679999973 2599999999999999999998521 12368999999999999
Q ss_pred ECCEEcCCCceEEccCCCEEEEcCeeEEEEEecC
Q psy13346 195 VNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQ 228 (238)
Q Consensus 195 VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~~ 228 (238)
|||++|.. ++.|++||+|.||.+. .|+|.+.
T Consensus 114 VNG~~i~~--~~~L~~GD~I~~G~~~-~Frf~~P 144 (154)
T 4ejq_A 114 VNGKKVTE--PSILRSGNRIIMGKSH-VFRFNHP 144 (154)
T ss_dssp ETTEECCS--CEECCTTCEEEETTTE-EEEEECH
T ss_pred ECCEEcCC--ceECCCCCEEEECCcE-EEEEcCh
Confidence 99999964 5899999999999875 4666553
No 27
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=99.74 E-value=6.9e-18 Score=155.68 Aligned_cols=89 Identities=25% Similarity=0.244 Sum_probs=77.0
Q ss_pred CCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECCEEcCCCceEEc
Q psy13346 129 QPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVEL 208 (238)
Q Consensus 129 ~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg~rI~~~~~~~L 208 (238)
..+..|.|. ...++|||++ .|||+|+++.||++||.|.+. ++.|+|+|++|+|||||||++|. .++.|
T Consensus 296 ~~g~~~~l~-~~~~~iGR~~-~~di~l~~~~vSr~Ha~i~~~--------~~~~~l~Dl~S~nGt~vng~~i~--~~~~L 363 (388)
T 2ff4_A 296 ASGRGYPLQ-AAATRIGRLH-DNDIVLDSANVSRHHAVIVDT--------GTNYVINDLRSSNGVHVQHERIR--SAVTL 363 (388)
T ss_dssp TTCCEEECC-SSEEEEESST-TSSEECCCTTSCTTCEEEEEC--------SSCEEEEECSCSSCCEETTEECS--SEEEE
T ss_pred CCCcEEEEC-CCCEEEecCC-CCeEEECCCccChhHeEEEEE--------CCEEEEEECCCCCCeEECCEECC--CceEC
Confidence 445678887 4569999995 699999999999999999997 56899999999999999999995 37899
Q ss_pred cCCCEEEEcCeeEEEEEecCC
Q psy13346 209 FEGDVIEFGLSTREYVLLHQN 229 (238)
Q Consensus 209 ~~GD~I~~G~~~~~fvl~~~~ 229 (238)
++||+|+||...+.|.+....
T Consensus 364 ~~gd~i~~G~~~~~~~~~~~~ 384 (388)
T 2ff4_A 364 NDGDHIRICDHEFTFQISAGT 384 (388)
T ss_dssp CTTCEEEETTEEEEEECSCCC
T ss_pred CCCCEEEECCEEEEEEeCCCC
Confidence 999999999988777765543
No 28
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain, BRCT domain, phosphoprotein binding, phosp binding, DNA repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe} PDB: 3hue_A* 3i0m_A* 3i0n_A*
Probab=99.73 E-value=5.7e-18 Score=152.13 Aligned_cols=110 Identities=19% Similarity=0.106 Sum_probs=84.9
Q ss_pred ceEEEEeeCCCCCceEEeecCCeEEEeeeCC--cccEEeCCCcccccceEEEEEeeccCC---cccceEEEEeCCCCCce
Q psy13346 119 KWRLYPFKNHQPLPIMYIHRQSAYIIGRNAK--VSDILIRHCSCSNQHAVLQYRELSLNN---TRVVRPYLMDLKSMNGT 193 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~--~~DI~l~d~sVSr~Ha~I~~~~~~~~~---~~~~~~~I~DlgS~NGT 193 (238)
.|.|..-.+...+..+.|..+. |+|||... .++|.++|++|||+||+|+++.....+ .....++|+||||+|||
T Consensus 1 MWiL~~~~d~~~Gkr~~L~pg~-YlIGR~~~~~~~lI~idD~SISRqHA~I~v~~v~~~dg~~~~~~~l~I~DLgSknGT 79 (325)
T 3huf_A 1 MWIIEAEGDILKGKSRILFPGT-YIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFGT 79 (325)
T ss_dssp CEEEEESTTTTTTCCEEECSEE-EEEESSCCCBTTEEECCCTTSCSSCEEEEECCCCHHHHHHCCCCCEEEEECSCSSCE
T ss_pred CcEEeccCccCCCeEEEecCCe-EEECCCCCccCceeecCCCCccccceEEEEecccccccccCCcceEEEEECCCCCCE
Confidence 4888874333577888888666 99999953 124689999999999999997422111 01247999999999999
Q ss_pred eECCEEcCCCceEEccCCCEEEEcCeeEEEEEecCC
Q psy13346 194 FVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQN 229 (238)
Q Consensus 194 ~VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~~~ 229 (238)
||||++|....+..+.+||.|+||.....|++.+.+
T Consensus 80 fVNGerI~~~~~~L~~dgd~I~fG~~~~~fRl~W~P 115 (325)
T 3huf_A 80 KVNEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRS 115 (325)
T ss_dssp EETTEECCTTCEEECSSEEEEEETTCSSCEEEEECC
T ss_pred EECCEECCCceeeecCCCCEEEecCCcceEEEEEee
Confidence 999999987765555689999999988888887765
No 29
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation, structural genomics consort ATP-binding, cytoskeleton, microtubule, motor protein, NUCL binding; 2.30A {Homo sapiens} PDB: 3mdb_A*
Probab=99.68 E-value=3.9e-16 Score=123.45 Aligned_cols=94 Identities=23% Similarity=0.329 Sum_probs=73.8
Q ss_pred ceEEEEeeCCCCC---ceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeE
Q psy13346 119 KWRLYPFKNHQPL---PIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFV 195 (238)
Q Consensus 119 ~w~L~v~kg~~~~---~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~V 195 (238)
...|+.+.++... ..+.|.. .++|||.. .|||+|.++.||++||+|.+.. ++.++|+|++ +|||||
T Consensus 26 ~PhLvnLn~Dp~~s~~l~y~L~~--~t~IGR~~-~~DI~L~~~~Vs~~Ha~I~~~~-------~g~~~l~dl~-~ngt~V 94 (124)
T 3fm8_A 26 KCFLVNLNADPALNELLVYYLKE--HTLIGSAN-SQDIQLCGMGILPEHCIIDITS-------EGQVMLTPQK-NTRTFV 94 (124)
T ss_dssp -CEEEETTCCTTSSCCCEEECCS--EEEEESST-TCSEECCSTTCCSSCEEEEECT-------TSCEEEEECT-TCCEEE
T ss_pred ccEEEEeCCCCccCceEEEECCC--CeEECCCC-CCCEEECCCCeecceEEEEECC-------CCeEEEEECC-CCCEEE
Confidence 4467777764322 3455543 48999995 6999999999999999999852 4679999995 899999
Q ss_pred CCEEcCCCceEEccCCCEEEEcCeeEEEEEe
Q psy13346 196 NGMKIAPLTYVELFEGDVIEFGLSTREYVLL 226 (238)
Q Consensus 196 Ng~rI~~~~~~~L~~GD~I~~G~~~~~fvl~ 226 (238)
||++|.. ++.|++||+|.||... .|++.
T Consensus 95 NG~~V~~--~~~L~~GD~I~lG~~~-~FrFn 122 (124)
T 3fm8_A 95 NGSSVSS--PIQLHHGDRILWGNNH-FFRLN 122 (124)
T ss_dssp TTEECCS--CEEECTTCEEEETTTE-EEEEE
T ss_pred CCEEcCC--cEECCCCCEEEECCCe-EEEEE
Confidence 9999984 6899999999999764 35543
No 30
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing, type III secretion system; 2.04A {Yersinia pestis} PDB: 4d9v_A
Probab=99.58 E-value=1.3e-14 Score=114.19 Aligned_cols=98 Identities=18% Similarity=0.227 Sum_probs=87.2
Q ss_pred ceEEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECCE
Q psy13346 119 KWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGM 198 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg~ 198 (238)
.|+|.++.|...+..+.|. ...++||.+.-.|||+|.|+.||+.||+|.+. ...|+|. +|.||||+||+
T Consensus 4 ~~klrvlsG~~~G~~l~L~-~~~~~IGs~~~~~DLvL~D~~Vs~~H~~L~~~--------~~g~~L~--~s~ngt~vdG~ 72 (123)
T 4a0e_A 4 SWVCRFYQGKHRGVEVELP-HGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVD--------EEGIRLT--DSAEPLLQEGL 72 (123)
T ss_dssp CEEEEECSGGGTTCEEEEC-SEEEEEESCTTTCSEECCCTTSCSSCEEEEEE--------TTEEEEE--EESSCCEETTE
T ss_pred eEEEEEecCCCCCcEEEcC-CCcEEECCCCCCCCEEEeCCCccceeEEEEEC--------CCeEEEE--eccCCEEECCE
Confidence 7999999999999999998 45699999932699999999999999999998 4689997 78999999999
Q ss_pred EcCCCceEEccCCCEEEEcCeeEEEEEecCC
Q psy13346 199 KIAPLTYVELFEGDVIEFGLSTREYVLLHQN 229 (238)
Q Consensus 199 rI~~~~~~~L~~GD~I~~G~~~~~fvl~~~~ 229 (238)
++..+. .|..|+.|.+|...+.|.-..++
T Consensus 73 ~v~~~~--~L~~g~~l~lG~~~l~~~~~~~~ 101 (123)
T 4a0e_A 73 PVPLGT--LLRAGSCLEVGFLLWTFVAVGQP 101 (123)
T ss_dssp ECCTTC--BCCTTSCEEETTEEEEEEETTSC
T ss_pred Eccccc--ccCCCCEEEEccEEEEEEcCCCC
Confidence 998764 99999999999998887766554
No 31
>3uv0_A Mutator 2, isoform B; FHA, protein binding, dimerization; 1.90A {Drosophila melanogaster}
Probab=99.51 E-value=7.6e-14 Score=105.72 Aligned_cols=81 Identities=21% Similarity=0.224 Sum_probs=67.5
Q ss_pred eEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCc-eeECCEEcCCCceEEccCC
Q psy13346 133 IMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNG-TFVNGMKIAPLTYVELFEG 211 (238)
Q Consensus 133 ~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NG-T~VNg~rI~~~~~~~L~~G 211 (238)
.+.|.....|.|||++ .|++.|++++||+.||.|.... .+.|+. . |+|| +||||+++ ..+.|..|
T Consensus 14 ~v~l~~~~~~rIGR~~-~~~l~LddpsVs~~HAti~~~~--------~G~~~l-~-S~nGtVFVNGqrv---~~~~I~~g 79 (102)
T 3uv0_A 14 AILLKADTIYRIGRQK-GLEISIADESMELAHATACILR--------RGVVRL-A-ALVGKIFVNDQEE---TVVDIGME 79 (102)
T ss_dssp CEECCTTCCEEEESST-TSTEECCCTTSCTTCEEEEEEE--------TTEEEE-E-ESSSCEEETTEEE---SEEEECGG
T ss_pred cEEeecCcEEEEcCCC-CCcEEECCcccccceEEEEecC--------CceEEE-E-eccCcEEECCEEe---eeEEccCC
Confidence 4456777789999995 7999999999999999999874 345553 3 9999 59999999 37899999
Q ss_pred CE------EEEcCeeEEEEEec
Q psy13346 212 DV------IEFGLSTREYVLLH 227 (238)
Q Consensus 212 D~------I~~G~~~~~fvl~~ 227 (238)
|. ++||..+..+.+..
T Consensus 80 DtI~g~v~lrFGnvea~l~~~~ 101 (102)
T 3uv0_A 80 NAVAGKVKLRFGNVEARLEFGE 101 (102)
T ss_dssp GCBTTEEEEEETTEEEEEEEC-
T ss_pred cccccEEEEEecCEEEEEEecC
Confidence 99 99999988877654
No 32
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=99.44 E-value=3.7e-13 Score=124.04 Aligned_cols=96 Identities=22% Similarity=0.261 Sum_probs=76.2
Q ss_pred ce-EEEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcc---------cccceEEEEEeeccCCcccceEEEEeCC
Q psy13346 119 KW-RLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSC---------SNQHAVLQYRELSLNNTRVVRPYLMDLK 188 (238)
Q Consensus 119 ~w-~L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sV---------Sr~Ha~I~~~~~~~~~~~~~~~~I~Dlg 188 (238)
.| +|+++.++.. .+.|. ...++|||+. .||++++++.| ||.||+|.+...+. +...|+|+| +
T Consensus 9 ~~g~l~~~~~~~~--~~~l~-~~~~~iGR~~-~~~~~~~~~~~~~~~~~~~vS~~H~~i~~~~~~~---~~~~~~i~D-~ 80 (419)
T 3i6u_A 9 PWARLWALQDGFA--NLECV-NDNYWFGRDK-SCEYCFDEPLLKRTDKYRTYSKKHFRIFREVGPK---NSYIAYIED-H 80 (419)
T ss_dssp CSEEEEECSSSSC--CEEEC-SSEEEEESST-TSSEETTCTTGGGCSGGGGSCTTCEEEECCEETT---TEECCEEEE-C
T ss_pred CceEeeecCCCCC--ceEec-CCCEEecCCC-ccCEEECCcccccccccccccccceEEEEEcCCC---CceEEEEEE-C
Confidence 56 6666665444 55665 5669999995 69999999876 99999998764221 123599999 6
Q ss_pred CCCceeECCEEcCCCceEEccCCCEEEEcCeeEE
Q psy13346 189 SMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTRE 222 (238)
Q Consensus 189 S~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~~~~ 222 (238)
|+|||||||.++..+....|.+||.|.||.+...
T Consensus 81 S~nGt~vn~~~~~~~~~~~l~~~d~i~~~~~~~~ 114 (419)
T 3i6u_A 81 SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNK 114 (419)
T ss_dssp CSSCEEETTEECCTTCEEECCTTEEEEESSTTCE
T ss_pred CcCCceECcccccCCCcccCCCCCEeeeeccccc
Confidence 9999999999999999999999999999986543
No 33
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase, alternative splicing, disease mutation, DNA damage, DNA repair, DNA-binding; 1.65A {Homo sapiens} SCOP: b.26.1.0
Probab=99.41 E-value=2.4e-12 Score=98.41 Aligned_cols=90 Identities=19% Similarity=0.199 Sum_probs=76.3
Q ss_pred CCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECCEEcCCCceEEc
Q psy13346 129 QPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVEL 208 (238)
Q Consensus 129 ~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg~rI~~~~~~~L 208 (238)
.....+.|..+...+|||++ .+. |.|..|||+|+.|..+.. .+.+.|.++| +|+++|||++|.++..+.|
T Consensus 12 ~~~~~I~L~~g~~v~iGR~p-~t~--I~DkrcSR~h~~L~~~~~------~g~v~vk~lg-~Np~~vng~~l~k~~~~~L 81 (102)
T 3kt9_A 12 SRHQRIRLPHLEAVVIGRGP-ETK--ITDKKCSRQQVQLKAECN------KGYVKVKQVG-VNPTSIDSVVIGKDQEVKL 81 (102)
T ss_dssp STTCEEECCBTCEEEECSST-TTC--CCCTTSCSSCEEEEEETT------TTEEEEEECS-SSCCEETTEECCBTCEEEE
T ss_pred CCCCcEEcCCCCcEEeccCC-ccc--cccCcccCcceEEEEecC------CCEEEEEECc-CCCCeECCEEcCCCCeEEe
Confidence 44567888888878899995 454 469999999999999852 3578999996 9999999999999999999
Q ss_pred cCCCEEEEcCeeEEEEEecC
Q psy13346 209 FEGDVIEFGLSTREYVLLHQ 228 (238)
Q Consensus 209 ~~GD~I~~G~~~~~fvl~~~ 228 (238)
++||+|.|-...+.|.+...
T Consensus 82 ~~GD~l~Ll~~~~~~~v~f~ 101 (102)
T 3kt9_A 82 QPGQVLHMVNELYPYIVEFE 101 (102)
T ss_dssp CTTCCEEEETTEEEEEEEEE
T ss_pred CCCCEEEEccCCceEEEEec
Confidence 99999999988888877653
No 34
>4egx_A Kinesin-like protein KIF1A; FHA domain, transport protein; 2.51A {Homo sapiens}
Probab=99.25 E-value=6.1e-11 Score=99.46 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=75.6
Q ss_pred ceEEEEeeCCC---CCceEEeecCCeEEEeeeC--CcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCce
Q psy13346 119 KWRLYPFKNHQ---PLPIMYIHRQSAYIIGRNA--KVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGT 193 (238)
Q Consensus 119 ~w~L~v~kg~~---~~~~~~l~~~~~~~IGR~~--~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT 193 (238)
..+|+-+..+. ..-.|+|. ....+|||.. ..|||.|..+.|+++||.|....... ..+.++|..+ +.+.|
T Consensus 68 ~PhLvnLn~Dp~ls~~l~y~L~-~g~t~VGr~~~~~~~dI~L~G~~I~~~Hc~i~~~~~~~---~~~~vtl~p~-~~a~t 142 (184)
T 4egx_A 68 TPHLVNLNEDPLMSECLLYYIK-DGITRVGREDGERRQDIVLSGHFIKEEHCVFRSDSRGG---SEAVVTLEPC-EGADT 142 (184)
T ss_dssp SCEEEECCCCTTCSSCSEEECC-SEEEEEECSSSSSCCSEECCSTTCCSEEEEEEEECCSS---CSCEEEEEEC-TTCCE
T ss_pred CceEEeccCCcccCceEEEEEC-CCcCcCCCCCcCCCCeEEECccccccccEEEEEcCCCC---ceEEEEEeeC-CCCeE
Confidence 44677766542 22255555 5568999963 25899999999999999999874211 1345778887 67899
Q ss_pred eECCEEcCCCceEEccCCCEEEEcCeeEEEEEecC
Q psy13346 194 FVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQ 228 (238)
Q Consensus 194 ~VNg~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~~ 228 (238)
||||.+|.. ++.|++||.|.||... .|+|.+.
T Consensus 143 ~VNG~~I~~--~~~L~~GDrI~lG~~h-~Frfn~P 174 (184)
T 4egx_A 143 YVNGKKVTE--PSILRSGNRIIMGKSH-VFRFNHP 174 (184)
T ss_dssp EETTEECCS--CEECCTTCEEEETTTE-EEEEECH
T ss_pred EEcCEEccc--cEEcCCCCEEEECCCC-EEEECCh
Confidence 999999974 6899999999999875 3776653
No 35
>2brf_A Bifunctional polynucleotide phosphatase/kinase; hydrolase/transferase, FHA, forkhead-associated, PNKP, PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Probab=99.25 E-value=2e-11 Score=94.31 Aligned_cols=97 Identities=15% Similarity=0.140 Sum_probs=73.6
Q ss_pred ceEEEEeeCCCCCceEEee-cCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECC
Q psy13346 119 KWRLYPFKNHQPLPIMYIH-RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~-~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg 197 (238)
.+.|....+.. ..+.|. ....++|||++ +..|.|..|||+|+.|.++.. .+.+.|.++| +|++++||
T Consensus 9 ~c~L~~~~~~~--~~I~Lp~~~g~~viGR~p---~t~I~DkrcSR~hv~L~ad~~------~~~v~vk~lG-~Np~~vng 76 (110)
T 2brf_A 9 RLWLESPPGEA--PPIFLPSDGQALVLGRGP---LTQVTDRKCSRTQVELVADPE------TRTVAVKQLG-VNPSTTGT 76 (110)
T ss_dssp EEEEECSTTSS--CCEECCSTTCCEEECSBT---TTTBCCTTSCSSCEEEEEETT------TTEEEEEECS-SSCCEEC-
T ss_pred EEEEEeCCCCC--CcEEeccCCCCEEEcCCC---CcccccccceeeeEEEEEecC------CCEEEEEEcc-cCCcEECC
Confidence 34455555442 367774 34569999995 345789999999999999853 4688999995 99999999
Q ss_pred EEcCCCceEEccCCCEEEEcCeeEEEEEec
Q psy13346 198 MKIAPLTYVELFEGDVIEFGLSTREYVLLH 227 (238)
Q Consensus 198 ~rI~~~~~~~L~~GD~I~~G~~~~~fvl~~ 227 (238)
.+|.++..+.|++||+|.|=...+.|.+.+
T Consensus 77 ~~l~k~~~~~L~~GD~leLl~g~y~~~v~f 106 (110)
T 2brf_A 77 QELKPGLEGSLGVGDTLYLVNGLHPLTLRW 106 (110)
T ss_dssp CBCCTTCEEEEETTCEEEEETTEEEEEEEE
T ss_pred EEcCCCCEEEecCCCEEEEccCCeEEEEEe
Confidence 999999999999999999854444444443
No 36
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich, P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Probab=99.23 E-value=4.4e-11 Score=95.95 Aligned_cols=100 Identities=18% Similarity=0.183 Sum_probs=77.6
Q ss_pred ceEEEEeeCCCCCceEEee-cCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECC
Q psy13346 119 KWRLYPFKNHQPLPIMYIH-RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~-~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg 197 (238)
.+.|....++. ..+.|. ....++|||++ ...|.|..|||+|+.|.++.. .+.+.|.++| .|+++|||
T Consensus 9 ~c~L~p~d~~~--~~I~Lp~~~g~vvIGRgP---et~ItDkRcSR~qv~L~ad~~------~g~V~Vk~lG-~NP~~vng 76 (143)
T 1yj5_C 9 RLWLQSPTGGP--PPIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPE------SRTVAVKQLG-VNPSTVGV 76 (143)
T ss_dssp EEEEECCTTSC--CCEECCTTTCEEEECSBT---TTTBCCSSSCSSCEEEEEETT------TTEEEEEECS-SSCCEETT
T ss_pred eEEEEecCCCC--CcEEeccCCCCEEEcCCC---ccccccccccceeEEEEEecC------CCeEEEEEcc-cCCcEECC
Confidence 34565555543 366774 44679999995 446789999999999999853 4678899995 89999999
Q ss_pred EEcCCCceEEccCCCEEEE--cCeeEEEEEecCCC
Q psy13346 198 MKIAPLTYVELFEGDVIEF--GLSTREYVLLHQNS 230 (238)
Q Consensus 198 ~rI~~~~~~~L~~GD~I~~--G~~~~~fvl~~~~~ 230 (238)
.+|.++..+.|++||+|.| |...+.|++..+..
T Consensus 77 ~~L~k~~~~~L~~GD~LeLl~g~y~f~V~f~e~~~ 111 (143)
T 1yj5_C 77 HELKPGLSGSLSLGDVLYLVNGLYPLTLRWEELST 111 (143)
T ss_dssp EECCTTCEEEECTTCEEESSSSCSEEEEEEEECC-
T ss_pred EEecCCCEEEecCCCEEEEecCCceEEEEecCCCC
Confidence 9999999999999999985 66666777655443
No 37
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain, beta-sandwich, antiparallel beta-sheets, phosphopeptide binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Probab=99.11 E-value=4.8e-11 Score=93.34 Aligned_cols=98 Identities=18% Similarity=0.181 Sum_probs=75.8
Q ss_pred ceEEEEeeCCCCCceEEee-cCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCcccceEEEEeCCCCCceeECC
Q psy13346 119 KWRLYPFKNHQPLPIMYIH-RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197 (238)
Q Consensus 119 ~w~L~v~kg~~~~~~~~l~-~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~~~~~I~DlgS~NGT~VNg 197 (238)
.+.|....+... .+.|. ....++|||++ +..|.|..|||+|+.|.++.. .+.+.|.++| +|+++|||
T Consensus 16 ~c~L~~~~~~~~--~I~Lp~~~g~~viGRgp---~t~I~DkrcSR~qv~L~ad~~------~~~v~vk~lG-~NP~~vng 83 (119)
T 1ujx_A 16 RLWLQSPTGGPP--PIFLPSDGQALVLGRGP---LTQVTDRKCSRNQVELIADPE------SRTVAVKQLG-VNPSTVGV 83 (119)
T ss_dssp CEEEECCSSSCC--CCCCCTTSCCEEESBBT---TTTBCCTTSCTTSEEEEEETT------TTEEEEEECS-SSCCBSSS
T ss_pred eEEEEeCCCCCC--cEEeccCCCCEEEcCCC---CcccccccccceeEEEEEecC------CCEEEEEEcc-cCCcEECC
Confidence 456666665533 44563 34569999995 345789999999999999863 4688999995 89999999
Q ss_pred EEcCCCceEEccCCCEEEE--cCeeEEEEEecC
Q psy13346 198 MKIAPLTYVELFEGDVIEF--GLSTREYVLLHQ 228 (238)
Q Consensus 198 ~rI~~~~~~~L~~GD~I~~--G~~~~~fvl~~~ 228 (238)
.+|.++..+.|++||.|.| |...++|++..+
T Consensus 84 ~~l~k~~~~~L~~GD~l~Ll~g~y~~~v~f~~~ 116 (119)
T 1ujx_A 84 QELKPGLSGSLSLGDVLYLVNGLYPLTLRWSGP 116 (119)
T ss_dssp SBCCTTCEEEEETTCCCBCBTTBSCCEEEECCC
T ss_pred EEecCCCEEEecCCCEEEEecCCeEEEEEeccC
Confidence 9999999999999999985 555666665543
No 38
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=98.99 E-value=7.3e-10 Score=96.24 Aligned_cols=78 Identities=18% Similarity=0.103 Sum_probs=60.8
Q ss_pred eEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEEeeccCCccc--ceEEEEeCCCCCce-eECCEEcCCCceEEcc
Q psy13346 133 IMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRV--VRPYLMDLKSMNGT-FVNGMKIAPLTYVELF 209 (238)
Q Consensus 133 ~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~~~~~~~~~~--~~~~I~DlgS~NGT-~VNg~rI~~~~~~~L~ 209 (238)
.+.+..+ .++|||+ +.|||+|++. + ||.|.... . . +.|+|+|++|+||| ||||++|... ..|+
T Consensus 86 ~y~~~~~-~itIG~~-~~~dI~l~~~-~---~~~~~~~~-~-----~~~~~~~l~~l~s~ngtvyvNg~~i~~~--~~L~ 151 (238)
T 1wv3_A 86 AYPSIQD-TMTIGPN-AYDDMVIQSL-M---NAIIIKDF-Q-----SIQESQYVRIVHDKNTDVYINYELQEQL--TNKA 151 (238)
T ss_dssp ECCSSCS-EEEEESS-TTSSEECTTC-S---SCEEEECG-G-----GHHHHCEEEEECCTTCCEEETTEECCSS--EEEE
T ss_pred EEecCCc-eEEEeCC-CCCeEEeCCC-e---eEEEEecc-c-----CcCCcEEEEEccCCCCCEEECCEEeccc--eecc
Confidence 3344444 7999998 4799999887 3 57666551 0 1 48999999999996 9999999764 5899
Q ss_pred -CCCEEEEcCeeEEEE
Q psy13346 210 -EGDVIEFGLSTREYV 224 (238)
Q Consensus 210 -~GD~I~~G~~~~~fv 224 (238)
.||.|.||+..+.|.
T Consensus 152 ~~GD~I~ig~~~~~~~ 167 (238)
T 1wv3_A 152 YIGDHIYVEGIWLEVQ 167 (238)
T ss_dssp ETTCEEEETTEEEEEC
T ss_pred CCcCEEEECCEEEEEE
Confidence 999999999866653
No 39
>1wv3_A Similar to DNA segregation ATPase and related proteins; structural genomics, unknown function; 1.75A {Staphylococcus aureus subsp} SCOP: b.26.1.4 b.26.1.4
Probab=83.27 E-value=2.3 Score=36.07 Aligned_cols=44 Identities=16% Similarity=0.259 Sum_probs=31.6
Q ss_pred EEEeeCCCCCceEEeecCCeEEEeeeCCcccEEeCCCcccccceEEEEE
Q psy13346 122 LYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYR 170 (238)
Q Consensus 122 L~v~kg~~~~~~~~l~~~~~~~IGR~~~~~DI~l~d~sVSr~Ha~I~~~ 170 (238)
|+++- ......+.|.....++||+.. .|+|.|.+. ..|+.|.+.
T Consensus 4 l~i~y-~~~~~~~~L~~~~~~tiG~~~-~~~itl~~~---~~~i~l~~~ 47 (238)
T 1wv3_A 4 LIIKY-NKQLKMLNLRDGKTYTISEDE-RADITLKSL---GEVIHLEQN 47 (238)
T ss_dssp EEEEE-TTEEEEEECCTTCCEEEESCT-TSSEECTTC---CCCEEEEEC
T ss_pred EEEEE-CCEEEEEecCCCcEEEECCCc-cceEEecCC---CccEEEEEc
Confidence 45554 344455667656679999994 699999876 677888876
No 40
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=60.93 E-value=3.8 Score=28.79 Aligned_cols=26 Identities=23% Similarity=0.415 Sum_probs=21.7
Q ss_pred CceeECCEEcCCCce--EEccCCCEEEE
Q psy13346 191 NGTFVNGMKIAPLTY--VELFEGDVIEF 216 (238)
Q Consensus 191 NGT~VNg~rI~~~~~--~~L~~GD~I~~ 216 (238)
--+.|||+-|++.++ +.|++||.|.|
T Consensus 35 vAVavNg~iVpr~~~~~~~L~dGD~IEI 62 (78)
T 2k5p_A 35 VTVELNGEVLEREAFDATTVKDGDAVEF 62 (78)
T ss_dssp CCEEETTEECCTTHHHHCEECSSBCEEE
T ss_pred EEEEECCEECChHHcCcccCCCCCEEEE
Confidence 347789999988765 79999999987
No 41
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=56.56 E-value=7.4 Score=27.35 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=18.7
Q ss_pred ceeECCEEcCCCceEEccCCCEEEE
Q psy13346 192 GTFVNGMKIAPLTYVELFEGDVIEF 216 (238)
Q Consensus 192 GT~VNg~rI~~~~~~~L~~GD~I~~ 216 (238)
|..|||+.+.-. ++|++||+|+|
T Consensus 43 ~AkVNG~~v~L~--~~L~~gd~VeI 65 (78)
T 3hvz_A 43 GAKVDGRIVPID--YKVKTGEIIDV 65 (78)
T ss_dssp EEEETTEEECTT--CBCCTTCBEEE
T ss_pred EEEECCEEcCCC--cccCCCCEEEE
Confidence 456799888875 58999999977
No 42
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=56.33 E-value=5.9 Score=26.28 Aligned_cols=24 Identities=29% Similarity=0.368 Sum_probs=17.9
Q ss_pred eeECCEEcCCC--ceEEccCCCEEEE
Q psy13346 193 TFVNGMKIAPL--TYVELFEGDVIEF 216 (238)
Q Consensus 193 T~VNg~rI~~~--~~~~L~~GD~I~~ 216 (238)
..|||+-+... ....|++||.|.|
T Consensus 32 vavN~~~v~~~~~~~~~L~dgD~v~i 57 (64)
T 2cu3_A 32 VLLNEEAFLGLEVPDRPLRDGDVVEV 57 (64)
T ss_dssp EEETTEEEEGGGCCCCCCCTTCEEEE
T ss_pred EEECCEECCccccCCcCCCCCCEEEE
Confidence 56788777654 2368999999976
No 43
>1p9k_A ORF, hypothetical protein; alfal motif, RNA-binding protein, E.coli, montreal-kingston structural genomics initiative, BSGI; NMR {Escherichia coli} SCOP: d.66.1.6
Probab=55.27 E-value=6 Score=27.39 Aligned_cols=33 Identities=12% Similarity=0.153 Sum_probs=23.8
Q ss_pred CCceeECCEEcCCCceEEccCCCEEEEcCeeEEE
Q psy13346 190 MNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREY 223 (238)
Q Consensus 190 ~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~~~~f 223 (238)
....+|||+.+... ...|..||.|++++..+.+
T Consensus 45 ~G~V~VNG~~v~~~-~~~v~~gd~I~v~~~~~~~ 77 (79)
T 1p9k_A 45 EGQVKVDGAVETRK-RCKIVAGQTVSFAGHSVQV 77 (79)
T ss_dssp HHHHEETTBCCCCS-SCCCCSSEEEEETTEEEEE
T ss_pred CCEEEECCEEecCC-CCCCCCCCEEEECCEEEEE
Confidence 34688999887432 3468899999999876543
No 44
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=53.41 E-value=12 Score=25.17 Aligned_cols=23 Identities=13% Similarity=0.018 Sum_probs=18.5
Q ss_pred ceeECCEEcCCCceEEccCCCEEEE
Q psy13346 192 GTFVNGMKIAPLTYVELFEGDVIEF 216 (238)
Q Consensus 192 GT~VNg~rI~~~~~~~L~~GD~I~~ 216 (238)
-..|||+.+... ..|++||.|.|
T Consensus 48 ~v~vNg~~v~~~--~~L~~gD~V~i 70 (77)
T 2q5w_D 48 QVAVNEEFVQKS--DFIQPNDTVAL 70 (77)
T ss_dssp EEEETTEEECTT--SEECTTCEEEE
T ss_pred EEEECCEECCCC--CCcCCCCEEEE
Confidence 467888888764 59999999987
No 45
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=52.60 E-value=6.9 Score=28.11 Aligned_cols=24 Identities=42% Similarity=0.418 Sum_probs=18.8
Q ss_pred eeECCEEcCCCce--EEccCCCEEEE
Q psy13346 193 TFVNGMKIAPLTY--VELFEGDVIEF 216 (238)
Q Consensus 193 T~VNg~rI~~~~~--~~L~~GD~I~~ 216 (238)
+.|||+-++...+ ..|++||.|.|
T Consensus 55 VavNg~iV~~~~~~~~~L~dGD~Vei 80 (87)
T 1tyg_B 55 VERNKEIIGKERYHEVELCDRDVIEI 80 (87)
T ss_dssp EEETTEEECGGGTTTSBCCSSSEEEE
T ss_pred EEECCEECChhhcCCcCCCCCCEEEE
Confidence 6688888876433 68999999976
No 46
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=52.37 E-value=3.3 Score=28.69 Aligned_cols=25 Identities=20% Similarity=0.195 Sum_probs=19.6
Q ss_pred ceeECCEEcCCCce--EEccCCCEEEE
Q psy13346 192 GTFVNGMKIAPLTY--VELFEGDVIEF 216 (238)
Q Consensus 192 GT~VNg~rI~~~~~--~~L~~GD~I~~ 216 (238)
-+.|||+-|++..+ +.|++||.|.|
T Consensus 32 AV~vNg~iVpr~~~~~~~L~dGD~veI 58 (73)
T 2kl0_A 32 AVALNYDVVPRGKWDETPVTAGDEIEI 58 (73)
T ss_dssp EEEESSSEECHHHHTTCBCCTTCEEEE
T ss_pred EEEECCEECChHHcCcccCCCCCEEEE
Confidence 46678888876543 68999999987
No 47
>2k6p_A Uncharacterized protein HP_1423; alpha-L motif, RNA-binding, unknown function; NMR {Helicobacter pylori}
Probab=51.65 E-value=14 Score=25.98 Aligned_cols=26 Identities=23% Similarity=0.335 Sum_probs=20.7
Q ss_pred CceeECCEEcCCCceEEccCCCEEEEcC
Q psy13346 191 NGTFVNGMKIAPLTYVELFEGDVIEFGL 218 (238)
Q Consensus 191 NGT~VNg~rI~~~~~~~L~~GD~I~~G~ 218 (238)
...+|||+.+.++ ..|..||.|.|-.
T Consensus 26 G~V~VNg~~~~~~--~~v~~gd~I~v~~ 51 (92)
T 2k6p_A 26 GAVWLNGSCAKAS--KEVKAGDTISLHY 51 (92)
T ss_dssp TCCEETTEECCTT--CBCCTTCEEEECC
T ss_pred CcEEECCEEcCCC--CCcCCCCEEEEEe
Confidence 4588999988554 5799999999854
No 48
>1dm9_A Hypothetical 15.5 KD protein in MRCA-PCKA intergenic region; heat shock proteins, protein-RNA interactions, ribosome, structural genomics; 2.00A {Escherichia coli} SCOP: d.66.1.3 PDB: 3bbu_A
Probab=50.74 E-value=16 Score=28.00 Aligned_cols=35 Identities=11% Similarity=0.080 Sum_probs=24.2
Q ss_pred CCceeECCEEcCCCceEEccCCCEEEEc--CeeEEEEEe
Q psy13346 190 MNGTFVNGMKIAPLTYVELFEGDVIEFG--LSTREYVLL 226 (238)
Q Consensus 190 ~NGT~VNg~rI~~~~~~~L~~GD~I~~G--~~~~~fvl~ 226 (238)
...++|||+.+.++ ..|..||+|.|- ...+.+.+.
T Consensus 33 ~G~V~VNG~~vk~s--~~V~~GD~I~I~~~~~~~~~~v~ 69 (133)
T 1dm9_A 33 GGKVHYNGQRSKPS--KIVELNATLTLRQGNDERTVIVK 69 (133)
T ss_dssp TTCEEETTEECCTT--CBCCTTCEEEEEETTEEEEEEEC
T ss_pred CCcEEECCEEcCCC--CEeCCCCEEEEEeCCceeeEEEc
Confidence 34589999998664 578999988774 444444443
No 49
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=49.36 E-value=5.5 Score=29.32 Aligned_cols=29 Identities=38% Similarity=0.217 Sum_probs=22.9
Q ss_pred eCCCCCceeECCEEcCCCceEEccCCCEEEEc
Q psy13346 186 DLKSMNGTFVNGMKIAPLTYVELFEGDVIEFG 217 (238)
Q Consensus 186 DlgS~NGT~VNg~rI~~~~~~~L~~GD~I~~G 217 (238)
|| +.+-..|||+.+... ..|++||.|.|=
T Consensus 55 dl-~~~~V~Vng~~v~~d--~~L~dGDRVEIy 83 (97)
T 2hj1_A 55 DL-STNKIGIFSRPIKLT--DVLKEGDRIEIY 83 (97)
T ss_dssp CT-TTSEEEEEECSCCTT--CBCCTTCEEEEC
T ss_pred cc-cccEEEEcCEECCCC--ccCCCCCEEEEE
Confidence 55 467788999888754 589999999874
No 50
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=48.86 E-value=14 Score=25.71 Aligned_cols=24 Identities=21% Similarity=0.130 Sum_probs=19.4
Q ss_pred CceeECCEEcCCCceEEccCCCEEEE
Q psy13346 191 NGTFVNGMKIAPLTYVELFEGDVIEF 216 (238)
Q Consensus 191 NGT~VNg~rI~~~~~~~L~~GD~I~~ 216 (238)
--.+|||+.+... ..|++||.|.|
T Consensus 59 ~~v~VN~~~v~~~--~~l~~gDeV~i 82 (89)
T 3po0_A 59 INVLRNGEAAALG--EATAAGDELAL 82 (89)
T ss_dssp SEEEETTEECCTT--SBCCTTCEEEE
T ss_pred EEEEECCEECCCC--cccCCCCEEEE
Confidence 4577899988764 58999999976
No 51
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=47.98 E-value=16 Score=24.61 Aligned_cols=22 Identities=36% Similarity=0.594 Sum_probs=18.0
Q ss_pred eeECCEEcCCCceEEccCCCEEEE
Q psy13346 193 TFVNGMKIAPLTYVELFEGDVIEF 216 (238)
Q Consensus 193 T~VNg~rI~~~~~~~L~~GD~I~~ 216 (238)
+.|||+-+.... .|++||.|.|
T Consensus 42 vavN~~~v~~~~--~L~~gD~V~i 63 (70)
T 1ryj_A 42 VKKNGQIVIDEE--EIFDGDIIEV 63 (70)
T ss_dssp EEETTEECCTTS--BCCTTCEEEE
T ss_pred EEECCEECCCcc--cCCCCCEEEE
Confidence 567888887764 9999999976
No 52
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=45.46 E-value=18 Score=24.57 Aligned_cols=23 Identities=26% Similarity=0.223 Sum_probs=18.4
Q ss_pred ceeECCEEcCCCceEEccCCCEEEE
Q psy13346 192 GTFVNGMKIAPLTYVELFEGDVIEF 216 (238)
Q Consensus 192 GT~VNg~rI~~~~~~~L~~GD~I~~ 216 (238)
-..|||+.+... ..|++||.|.|
T Consensus 52 ~v~vN~~~v~~~--~~l~~gD~V~i 74 (81)
T 1fm0_D 52 LAAVNQTLVSFD--HPLTDGDEVAF 74 (81)
T ss_dssp EEEETTEECCTT--CBCCTTCEEEE
T ss_pred EEEECCEECCCC--CCCCCCCEEEE
Confidence 378898888653 58999999987
No 53
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=45.13 E-value=6.6 Score=29.43 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=19.8
Q ss_pred eeECCEEcC--CCceEEccCCCEEEE
Q psy13346 193 TFVNGMKIA--PLTYVELFEGDVIEF 216 (238)
Q Consensus 193 T~VNg~rI~--~~~~~~L~~GD~I~~ 216 (238)
++|||..+. .+-.++|++||.|.|
T Consensus 70 VLVNg~d~e~l~gldt~L~dgD~V~f 95 (110)
T 2k9x_A 70 VLVNSCDAEVVGGMDYVLNDGDTVEF 95 (110)
T ss_dssp EEESSSBHHHHTSSCCCCCSSCEEEE
T ss_pred EEECCeeeeccCCcccCCCCcCEEEE
Confidence 788998774 455789999999988
No 54
>3mml_A Allophanate hydrolase subunit 2; structural genomics, PSI-2, protein structure initiative, tuberculosis structural genomics consortium; 2.50A {Mycobacterium smegmatis}
Probab=44.04 E-value=29 Score=30.80 Aligned_cols=39 Identities=23% Similarity=0.428 Sum_probs=31.6
Q ss_pred CCCCceeECCEEcCCCceEEccCCCEEEEcCe---eEEEEEe
Q psy13346 188 KSMNGTFVNGMKIAPLTYVELFEGDVIEFGLS---TREYVLL 226 (238)
Q Consensus 188 gS~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~---~~~fvl~ 226 (238)
|..-...|||+.+...+.+.++.||+|+||.. .+.|+-.
T Consensus 78 GA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~~G~R~YLAV 119 (318)
T 3mml_A 78 GADTDPAVNGIPFGTNSIHHVHDGQVISLGAPHSGLRSYLAV 119 (318)
T ss_dssp ESCCCCEETTEECCTTSCEEECTTCEEECCCCSSCSEEEEEE
T ss_pred CCCCcceECCEEcCCCeEEEECCCCEEEeCCCCCccEEEEEE
Confidence 45667789999999999999999999999964 4555543
No 55
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=41.09 E-value=5.3 Score=26.63 Aligned_cols=24 Identities=17% Similarity=0.105 Sum_probs=18.0
Q ss_pred eeECCEEcCCCc--eEEccCCCEEEE
Q psy13346 193 TFVNGMKIAPLT--YVELFEGDVIEF 216 (238)
Q Consensus 193 T~VNg~rI~~~~--~~~L~~GD~I~~ 216 (238)
..|||+-+.... ...|++||.|.|
T Consensus 34 vavN~~~v~~~~~~~~~L~~gD~v~i 59 (66)
T 1f0z_A 34 LAINQQIVPREQWAQHIVQDGDQILL 59 (66)
T ss_dssp EEETTEEECHHHHTTCCCCTTEEECE
T ss_pred EEECCEECCchhcCCcCCCCCCEEEE
Confidence 678888887532 258999999876
No 56
>3ega_A Pellino-2, protein pellino homolog 2; FHA domain, E3 ubiquitin ligase, substrate binding phosphoprotein, protein binding; 1.80A {Homo sapiens} PDB: 3egb_A
Probab=40.75 E-value=1.1e+02 Score=26.38 Aligned_cols=34 Identities=12% Similarity=0.232 Sum_probs=23.4
Q ss_pred CeEEEeeeCC-cccEEeCC---------------CcccccceEEEEEeec
Q psy13346 140 SAYIIGRNAK-VSDILIRH---------------CSCSNQHAVLQYRELS 173 (238)
Q Consensus 140 ~~~~IGR~~~-~~DI~l~d---------------~sVSr~Ha~I~~~~~~ 173 (238)
+.+-|||+.+ ..|+++-| ..|||.-|+|.++..+
T Consensus 88 DMFQIGRste~pIDFvV~dt~~g~~~~~~~~~~~StISRfACRI~~dR~p 137 (263)
T 3ega_A 88 DMFQVGRSTESPIDFVVTDTISGSQNTDEAQITQSTISRFACRIVCDRNE 137 (263)
T ss_dssp EEEEEESCCSTTCSEECCCC----------CCCCCCSCSSCEEEEEESST
T ss_pred chhhhcCCCCCCCCeEEeccccccccCCcCCcccchhhheeEEEEeccCC
Confidence 4578999842 24666532 3599999999987644
No 57
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=40.69 E-value=16 Score=25.66 Aligned_cols=25 Identities=16% Similarity=0.255 Sum_probs=18.6
Q ss_pred ceeECCEEcCC--CceEEccCCCEEEE
Q psy13346 192 GTFVNGMKIAP--LTYVELFEGDVIEF 216 (238)
Q Consensus 192 GT~VNg~rI~~--~~~~~L~~GD~I~~ 216 (238)
-.+|||+.+.. +....|++||.|.|
T Consensus 60 ~v~VN~~~v~~~~~~~~~L~~gDeV~i 86 (93)
T 3dwg_C 60 NIYVNDEDVRFSGGLATAIADGDSVTI 86 (93)
T ss_dssp EEEETTEEGGGTTGGGCBCCTTCEEEE
T ss_pred EEEECCEEccCcCCCCcCCCCCCEEEE
Confidence 36789988763 22468999999876
No 58
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=40.20 E-value=6.8 Score=29.49 Aligned_cols=24 Identities=21% Similarity=0.198 Sum_probs=19.3
Q ss_pred eeECCEEcC--CCceEEccCCCEEEE
Q psy13346 193 TFVNGMKIA--PLTYVELFEGDVIEF 216 (238)
Q Consensus 193 T~VNg~rI~--~~~~~~L~~GD~I~~ 216 (238)
++|||+.+. .+-.++|++||.|.|
T Consensus 76 VlVN~~di~~l~gldt~L~dGDeV~i 101 (114)
T 1wgk_A 76 VLINDADWELLGELDYQLQDQDSILF 101 (114)
T ss_dssp EEESSSBHHHHCTTTCBCCSSEEEEE
T ss_pred EEECCeeeeccCCcCcCCCCCCEEEE
Confidence 788998654 455689999999987
No 59
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=37.89 E-value=17 Score=26.06 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=18.2
Q ss_pred eeECCEEcCCCceEEccCCCEEEE
Q psy13346 193 TFVNGMKIAPLTYVELFEGDVIEF 216 (238)
Q Consensus 193 T~VNg~rI~~~~~~~L~~GD~I~~ 216 (238)
.+|||+.+.. ...|++||.|.|
T Consensus 70 v~VNg~~v~~--~~~L~dGDeV~i 91 (98)
T 1vjk_A 70 IAVNGRYVSW--DEELKDGDVVGV 91 (98)
T ss_dssp EEETTBCCCT--TCBCCTTCEEEE
T ss_pred EEECCEECCC--CCCCCCCCEEEE
Confidence 7789888765 368999999987
No 60
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=37.81 E-value=15 Score=24.91 Aligned_cols=24 Identities=29% Similarity=0.332 Sum_probs=16.7
Q ss_pred ceeECCEEcCCCceEEccCCCEEEE
Q psy13346 192 GTFVNGMKIAPLTYVELFEGDVIEF 216 (238)
Q Consensus 192 GT~VNg~rI~~~~~~~L~~GD~I~~ 216 (238)
-..|||+.+.. ....|++||.|.|
T Consensus 44 ~vavN~~~v~~-~~~~l~~gDeV~i 67 (74)
T 3rpf_C 44 AIALNDHLIDN-LNTPLKDGDVISL 67 (74)
T ss_dssp EEEESSSEECC-TTCCCCTTCEEEE
T ss_pred EEEECCEEcCC-CCcCCCCCCEEEE
Confidence 35667766442 3468999999976
No 61
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=37.47 E-value=20 Score=25.78 Aligned_cols=24 Identities=29% Similarity=0.378 Sum_probs=18.6
Q ss_pred eeECCEEcC--CCceEEccCCCEEEE
Q psy13346 193 TFVNGMKIA--PLTYVELFEGDVIEF 216 (238)
Q Consensus 193 T~VNg~rI~--~~~~~~L~~GD~I~~ 216 (238)
.+||++.+. .+....|++||.|.|
T Consensus 67 v~VN~~~~~~~~~~d~~L~dgDeVa~ 92 (99)
T 2qjl_A 67 TLINDTDWELEGEKDYILEDGDIISF 92 (99)
T ss_dssp EEETTEEGGGGTGGGCBCCTTCEEEE
T ss_pred EEECCEEccccCCCCcCcCCCCEEEE
Confidence 788998764 233569999999977
No 62
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=36.18 E-value=10 Score=27.42 Aligned_cols=28 Identities=21% Similarity=0.145 Sum_probs=20.4
Q ss_pred CCCceeECCEEcCC--CceEEccCCCEEEE
Q psy13346 189 SMNGTFVNGMKIAP--LTYVELFEGDVIEF 216 (238)
Q Consensus 189 S~NGT~VNg~rI~~--~~~~~L~~GD~I~~ 216 (238)
|.+-.+|||+.+.. .....|++||.|.|
T Consensus 63 ~~~~v~VNg~~v~~~~~~~~~L~~gD~V~i 92 (99)
T 2l52_A 63 GSINILINGNNIRHLEGLETLLKDSDEIGI 92 (99)
T ss_dssp SSCEEEETTSCGGGTTSTTSCCCTTEEEEE
T ss_pred cccEEEECCEEccccCCCCCCCCCCCEEEE
Confidence 34468899987742 23468999999987
No 63
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=36.07 E-value=9.2 Score=26.34 Aligned_cols=23 Identities=30% Similarity=0.306 Sum_probs=18.5
Q ss_pred ceeECCEEcCCCceEEccCCCEEEE
Q psy13346 192 GTFVNGMKIAPLTYVELFEGDVIEF 216 (238)
Q Consensus 192 GT~VNg~rI~~~~~~~L~~GD~I~~ 216 (238)
-..|||+.+... ..|++||.|.|
T Consensus 48 ~VavNg~~v~~~--~~L~dGD~V~i 70 (77)
T 1rws_A 48 IAKVNGKVVLED--DEVKDGDFVEV 70 (77)
T ss_dssp CEEETTEEECSS--SCCCSSCCCBC
T ss_pred EEEECCEECCCC--CCcCCCCEEEE
Confidence 477888888765 69999999865
No 64
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=34.21 E-value=15 Score=25.46 Aligned_cols=25 Identities=28% Similarity=0.314 Sum_probs=18.5
Q ss_pred ceeECCEEcCC--CceEEccCCCEEEE
Q psy13346 192 GTFVNGMKIAP--LTYVELFEGDVIEF 216 (238)
Q Consensus 192 GT~VNg~rI~~--~~~~~L~~GD~I~~ 216 (238)
-.+|||+.+.. .....|++||.|.|
T Consensus 57 ~v~vN~~~v~~~~~~~~~l~~gD~V~i 83 (90)
T 2g1e_A 57 IILVNGNNITSMKGLDTEIKDDDKIDL 83 (90)
T ss_dssp EEEESSSBGGGTCSSSCBCCTTCEEEE
T ss_pred EEEECCEEccccCCCCcCCCCCCEEEE
Confidence 37788887752 23468999999987
No 65
>3oep_A Putative uncharacterized protein TTHA0988; KIPI, KIPA, cyclophilin, allophanate hydrolase, structural G unknown function, NPPSFA; 1.75A {Thermus thermophilus} PDB: 3opf_A 3ore_A
Probab=32.63 E-value=45 Score=31.36 Aligned_cols=43 Identities=16% Similarity=0.136 Sum_probs=33.1
Q ss_pred EEeCCCCCceeECCEEcCCCceEEccCCCEEEEcCe---eEEEEEe
Q psy13346 184 LMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLS---TREYVLL 226 (238)
Q Consensus 184 I~DlgS~NGT~VNg~rI~~~~~~~L~~GD~I~~G~~---~~~fvl~ 226 (238)
|-=.|..-...|||+.+...+.+.++.||+|+||.. .+.|+-.
T Consensus 291 iAvtGA~~~~~ldg~~v~~~~~~~v~~G~~L~~g~~~~G~R~YLAv 336 (494)
T 3oep_A 291 AAFAGYGFVALLEGEEIPPGQSFLWPRGKTLRFRPRGPGVRGYLAV 336 (494)
T ss_dssp EEEEESSEEEEETTEEECSSEEEEECTTCEEEEEECSSCCEEEEEE
T ss_pred EEEECCCCcceECCEEccCCeEEEECCCCEEEeCCCCCCcEEEEEe
Confidence 333455667889999999999999999999999963 4555543
No 66
>2eki_A DRG 1, developmentally-regulated GTP-binding protein 1; protein NEDD3, neural precursor cell expressed developmentally DOWN-regulated protein 3; NMR {Homo sapiens}
Probab=30.95 E-value=15 Score=26.88 Aligned_cols=23 Identities=26% Similarity=0.140 Sum_probs=18.2
Q ss_pred eeECCEEcCCCceEEccCCCEEEEc
Q psy13346 193 TFVNGMKIAPLTYVELFEGDVIEFG 217 (238)
Q Consensus 193 T~VNg~rI~~~~~~~L~~GD~I~~G 217 (238)
+..|++++... ++|.+||+|+|=
T Consensus 63 aK~~~qrVgld--h~L~d~DVV~Iv 85 (93)
T 2eki_A 63 VKHNPQKVGKD--HTLEDEDVIQIV 85 (93)
T ss_dssp SSSSSEEECSS--CCCCSSEEECEE
T ss_pred ccCCCEECCCC--cEecCCCEEEEE
Confidence 44588999874 699999999873
No 67
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=27.96 E-value=40 Score=22.13 Aligned_cols=22 Identities=27% Similarity=0.203 Sum_probs=16.4
Q ss_pred eeECCEEcCCCceEEccCCCEEEE
Q psy13346 193 TFVNGMKIAPLTYVELFEGDVIEF 216 (238)
Q Consensus 193 T~VNg~rI~~~~~~~L~~GD~I~~ 216 (238)
..|||+.+... ..|..||.|.|
T Consensus 39 a~vNg~lvdl~--~~L~~~~~Vei 60 (73)
T 2kmm_A 39 AKVNHKLVPLS--YVLNSGDQVEV 60 (73)
T ss_dssp EEETTEECCTT--CBCCSSSBEEE
T ss_pred EEECCEEeCCC--cCcCCCCEEEE
Confidence 35788877764 58899998765
No 68
>1c05_A Ribosomal protein S4 delta 41; two subdomains, unique topology, possible helix-turn-helix motif, ribosome; NMR {Geobacillus stearothermophilus} SCOP: d.66.1.2 PDB: 1c06_A 1eg0_A 1qd7_C
Probab=24.61 E-value=49 Score=26.00 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=20.8
Q ss_pred CCceeECCEEcC-CCceEEccCCCEEEEcC
Q psy13346 190 MNGTFVNGMKIA-PLTYVELFEGDVIEFGL 218 (238)
Q Consensus 190 ~NGT~VNg~rI~-~~~~~~L~~GD~I~~G~ 218 (238)
....+|||+.+. ++ +.+..||+|.|-.
T Consensus 75 ~G~V~VNG~~v~~ps--~~V~~gD~I~V~~ 102 (159)
T 1c05_A 75 HGHILVDGSRVNIPS--YRVKPGQTIAVRE 102 (159)
T ss_dssp TTCEEETTEECCCSS--CBCCTTCEEEECG
T ss_pred CCCEEECCEEeCcCC--cEeCCCCEEEEeC
Confidence 345889999984 54 5789999999854
No 69
>1h3f_A Tyrosyl-tRNA synthetase; ligase, aminoacyl-tRNA synthetase; HET: TYE; 2.00A {Thermus thermophilus} SCOP: c.26.1.1 d.66.1.4 PDB: 1h3e_A*
Probab=20.34 E-value=1.1e+02 Score=28.14 Aligned_cols=35 Identities=11% Similarity=0.106 Sum_probs=24.2
Q ss_pred CCCceeECCEEcCCCceEEccCCC--EEEEcCeeEEEE
Q psy13346 189 SMNGTFVNGMKIAPLTYVELFEGD--VIEFGLSTREYV 224 (238)
Q Consensus 189 S~NGT~VNg~rI~~~~~~~L~~GD--~I~~G~~~~~fv 224 (238)
..+|.+|||++|.... ..|..++ +|+.|--.+..+
T Consensus 392 ~~ggv~vn~~~v~d~~-~~~~~~~~~~l~~GKk~~~~v 428 (432)
T 1h3f_A 392 QNRGLRLDGEVLTDPM-LQVDLSRPRILQRGKDRFVRV 428 (432)
T ss_dssp HTTCEEETTEECCCTT-CEEECSSCEEEEETTTEEEEE
T ss_pred HhCCEEECCEEecCcc-ceecCCCcEEEEeCCeeEEEE
Confidence 3679999999997653 3444445 889998754443
Done!