RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13346
(238 letters)
>2jpe_A Nuclear inhibitor of protein phosphatase 1; FHA domain, NIPP1, mRNA
splicing, transcription; NMR {Mus musculus}
Length = 140
Score = 141 bits (358), Expect = 3e-43
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 98 STLRPIVIYYEPKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRH 157
++ + ++ P A P L K + + + I + Y+ GRN + D I H
Sbjct: 14 NSGSSLPLFDCPTWAGKPPP-GLHLDVVKGDKLIEKLIIDEKKYYLFGRNPDLCDFTIDH 72
Query: 158 CSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFG 217
SCS HA L Y + R +L+DL S +GTF+ +++ P ++ + FG
Sbjct: 73 QSCSRVHAALVYHKHL------KRVFLIDLNSTHGTFLGHIRLEPHKPQQIPIDSTVSFG 126
Query: 218 LSTREYVLLH 227
STR Y L
Sbjct: 127 ASTRAYTLRE 136
>3els_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 1.80A {Saccharomyces cerevisiae}
Length = 158
Score = 120 bits (302), Expect = 1e-34
Identities = 41/156 (26%), Positives = 67/156 (42%), Gaps = 36/156 (23%)
Query: 106 YYEPKDAKLP------------SQYKWRLYPFKNHQ----PLPIMYIHRQSAYIIGRN-- 147
+ EP+DA P + + L ++ + P ++ +S Y++GR
Sbjct: 6 HVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRSCYLVGRELG 65
Query: 148 ------------AKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFV 195
V+DI I + S QH V+Q+R N +++ Y+MDL S NGT +
Sbjct: 66 HSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFR----NVRGILKCYVMDLDSSNGTCL 121
Query: 196 NGMKIAPLTYVELFEGDVIEFGLSTR--EYVLLHQN 229
N + I Y+EL GDV+ +Y L+ N
Sbjct: 122 NNVVIPGARYIELRSGDVLTLSEFEEDNDYELIFMN 157
>3elv_A PRE-mRNA leakage protein 1; intrinsically unstructured domain,
forkhead-associated domai domain, PRE-mRNA retention and
splicing; 2.40A {Saccharomyces cerevisiae} PDB: 2jkd_A
Length = 205
Score = 109 bits (272), Expect = 9e-30
Identities = 36/165 (21%), Positives = 61/165 (36%), Gaps = 37/165 (22%)
Query: 98 STLRPIVIYYEPKDAKLPSQYKWRLYPFKNHQ-----------------PLPIMYIHRQS 140
+ I + + + + + P ++ +S
Sbjct: 44 NNKEGIALKHVEPQDAISPDNYMDMLGLEARDRTMYELVIYRKNDKDKGPWKRYDLNGRS 103
Query: 141 AYIIGRN--------------AKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMD 186
Y++GR V+DI I + S QH V+Q+R N +++ Y+MD
Sbjct: 104 CYLVGRELGHSLDTDLDDRTEIVVADIGIPEETSSKQHCVIQFR----NVRGILKCYVMD 159
Query: 187 LKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTR--EYVLLHQN 229
L S NGT +N + I Y+EL GDV+ +Y L+ N
Sbjct: 160 LDSSNGTCLNNVVIPGARYIELRSGDVLTLSEFEEDNDYELIFMN 204
>1uht_A Expressed protein; FHA domain, beta-sandwich, antiparallel
beta-sheets, phosphopeptide binding motif, structural
genomics; NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 118
Score = 75.6 bits (186), Expect = 7e-18
Identities = 26/93 (27%), Positives = 40/93 (43%), Gaps = 8/93 (8%)
Query: 136 IHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFV 195
S +GR + ++I I+ S +H + ++ V + DL S NGT +
Sbjct: 29 YKPGSTIRVGRIVRGNEIAIKDAGISTKHL-----RIESDSGNWV---IQDLGSSNGTLL 80
Query: 196 NGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQ 228
N + P T V L +GDVI+ G T V
Sbjct: 81 NSNALDPETSVNLGDGDVIKLGEYTSILVNFVS 113
>3va4_A Mediator of DNA damage checkpoint protein 1; cell cycle, FHA
domain, DNA-damage, CHK2 and MDC1 dimerizati; HET: TPO;
1.54A {Mus musculus} PDB: 3va1_A* 3umz_A 3unm_A 3unn_A*
3uot_A* 3un0_B
Length = 132
Score = 72.2 bits (177), Expect = 2e-16
Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 9/92 (9%)
Query: 138 RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197
++GR+ + + S S QHAV++ P L D S+NGT +
Sbjct: 43 YLGKNVVGRSPD-CSVALPFPSISKQHAVIEISA------WNKAPILQDCGSLNGTQIVK 95
Query: 198 MK--IAPLTYVELFEGDVIEFGLSTREYVLLH 227
+ P L + ++I F +Y L
Sbjct: 96 PPRVLPPGVSHRLRDQELILFADFPCQYHRLD 127
>3gqs_A Adenylate cyclase-like protein; FHA domain, structural genomics,
PSI-2, protein structure in midwest center for
structural genomics, MCSG; 2.20A {Chlamydia trachomatis}
Length = 106
Score = 67.3 bits (165), Expect = 8e-15
Identities = 25/89 (28%), Positives = 39/89 (43%), Gaps = 9/89 (10%)
Query: 136 IHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFV 195
+ YI+G + +V+DI++ S S QHA + +N+ ++ DL S NG V
Sbjct: 21 LDSGKTYIVGSDPQVADIVLSDMSISRQHAKIIIGN---DNSVLIE----DLGSKNGVIV 73
Query: 196 NGMKIAPLTYVELFEGDVIEFGLSTREYV 224
G KI L V+ G + V
Sbjct: 74 EGRKIE--HQSTLSANQVVALGTTLFLLV 100
>2csw_A Ubiquitin ligase protein RNF8; 11-stranded beta sandwich, ring
finger protein 8, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: b.26.1.2
Length = 145
Score = 68.1 bits (166), Expect = 1e-14
Identities = 21/82 (25%), Positives = 35/82 (42%), Gaps = 10/82 (12%)
Query: 139 QSAYIIGRNAKVSDILIRHCSC---SNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFV 195
+GR V+ L+ S H VL+ + +MD KS+NG ++
Sbjct: 35 GCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP----EGQW---TIMDNKSLNGVWL 87
Query: 196 NGMKIAPLTYVELFEGDVIEFG 217
N ++ PL + +GD I+ G
Sbjct: 88 NRARLEPLRVYSIHQGDYIQLG 109
>2jqj_A DNA damage response protein kinase DUN1; protein/phosphopeptide,
cell cycle; HET: DNA; NMR {Saccharomyces cerevisiae}
PDB: 2jql_A*
Length = 151
Score = 67.0 bits (163), Expect = 3e-14
Identities = 25/123 (20%), Positives = 41/123 (33%), Gaps = 4/123 (3%)
Query: 109 PKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQ 168
L + + I ++ IGR+ D+++ S HA
Sbjct: 8 SNKPSSEYTCLGHLVNLIPGKEQKV-EITNRNVTTIGRSRS-CDVILSEPDISTFHAEFH 65
Query: 169 YRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQ 228
++ + + KS NGTF+NG ++ L GD I FG S
Sbjct: 66 LLQMD-VDNFQRNLINVIDKSRNGTFINGNRLVK-KDYILKNGDRIVFGKSCSFLFKYAS 123
Query: 229 NSE 231
+S
Sbjct: 124 SSS 126
>2pie_A E3 ubiquitin-protein ligase RNF8; FHA domain, complex, ligase,
signaling protein; HET: TPO; 1.35A {Homo sapiens} SCOP:
b.26.1.2
Length = 138
Score = 65.7 bits (160), Expect = 7e-14
Identities = 23/103 (22%), Positives = 39/103 (37%), Gaps = 17/103 (16%)
Query: 139 QSAYIIGR---NAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFV 195
+GR I S H VL+ + +MD KS+NG ++
Sbjct: 27 GCEVTVGRGFGVTYQLVSKICPLMISRNHCVLKQNP----EGQW---TIMDNKSLNGVWL 79
Query: 196 NGMKIAPLTYVELFEGDVIEFGLSTR-------EYVLLHQNSE 231
N ++ PL + +GD I+ G+ EY + ++ E
Sbjct: 80 NRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWE 122
>1mzk_A Kinase associated protein phosphatase; beta sandwich, hydrolase;
NMR {Arabidopsis thaliana} SCOP: b.26.1.2
Length = 139
Score = 65.7 bits (160), Expect = 8e-14
Identities = 27/99 (27%), Positives = 45/99 (45%), Gaps = 15/99 (15%)
Query: 142 YIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKI- 200
+GR + SD+ ++ S +HA + + N+ + L+D+ S+NGT VN I
Sbjct: 34 VKLGRVSP-SDLALKDSEVSGKHAQITW------NSTKFKWELVDMGSLNGTLVNSHSIS 86
Query: 201 -------APLTYVELFEGDVIEFGLSTREYVLLHQNSEC 232
VEL D+I G +T+ YV + +E
Sbjct: 87 HPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQNEF 125
>1g6g_A Protein kinase RAD53; beta-sandwich, phosphopeptide complex, cell
cycle; HET: TPO; 1.60A {Saccharomyces cerevisiae} SCOP:
b.26.1.2
Length = 127
Score = 64.1 bits (156), Expect = 2e-13
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 139 QSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGM 198
+ + GRN L SN+H + E L++ S NGT++NG
Sbjct: 35 KKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGN--------LLLNDISTNGTWLNGQ 86
Query: 199 KIAPLTYVELFEGDVIEFGLSTREYVL 225
K+ + L +GD I G+ +L
Sbjct: 87 KVEKNSNQLLSQGDEITVGVGVESDIL 113
>1gxc_A CHK2, CDS1, serine/threonine-protein kinase CHK2;
phosphoprotein-binding domain, checkpoint kinase,
transferase; HET: TPO; 2.7A {Homo sapiens} SCOP:
b.26.1.2
Length = 149
Score = 63.5 bits (154), Expect = 5e-13
Identities = 25/126 (19%), Positives = 45/126 (35%), Gaps = 16/126 (12%)
Query: 115 PSQYKW-RLYPFKNHQPLPIMYIHRQSAYIIGRNA--------KVSDILIRHCSCSNQHA 165
P+ W RL+ ++ Y GR+ + ++ + S +H
Sbjct: 25 PTPAPWARLWALQDGFANLEC---VNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHF 81
Query: 166 VLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVL 225
+ +RE+ N+ + Y+ D S NGTFVN + L I LS + +
Sbjct: 82 RI-FREVGPKNSYIA--YIEDH-SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFV 137
Query: 226 LHQNSE 231
+
Sbjct: 138 FFDLTV 143
>1lgp_A Cell cycle checkpoint protein CHFR; FHA, tungstate, domain
swapping; 2.00A {Homo sapiens} SCOP: b.26.1.2 PDB:
1lgq_A
Length = 116
Score = 62.5 bits (152), Expect = 5e-13
Identities = 23/102 (22%), Positives = 37/102 (36%), Gaps = 8/102 (7%)
Query: 121 RLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVV 180
RL + P + + ++ + IGR + S H + E + +V
Sbjct: 6 RLLRLGAEEGEPHVLLRKRE-WTIGRRRGCDLSFPSNKLVSGDHCRIVVDE---KSGQV- 60
Query: 181 RPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTRE 222
L D S +GT +N +K+ L GDVI E
Sbjct: 61 --TLEDT-STSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNE 99
>1g3g_A Protien kinase SPK1; FHA domain, RAD53, phosphopeptide,
phosphoprotein, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2 PDB: 1j4o_A 1j4p_A* 1j4q_A*
1k3j_A 1k3n_A* 1k3q_A* 2a0t_A* 2jqi_A*
Length = 164
Score = 63.1 bits (153), Expect = 9e-13
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 139 QSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGM 198
+ + GRN L SN+H + E L++ S NGT++NG
Sbjct: 63 KKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGN--------LLLNDISTNGTWLNGQ 114
Query: 199 KIAPLTYVELFEGDVIEFGLSTREYVL 225
K+ + L +GD I G+ +L
Sbjct: 115 KVEKNSNQLLSQGDEITVGVGVESDIL 141
>3hx1_A SLR1951 protein; P74513_SYNY3, adenylate cyclase-like protein,
NESG, structural genomics, PSI-2, protein structure
initiative; 2.50A {Synechocystis SP}
Length = 131
Score = 62.2 bits (151), Expect = 1e-12
Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 6/96 (6%)
Query: 138 RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNT--RVVRPYLMDLKSMNGTFV 195
++ Y IGR+ + +DI I+ S HAVL + R++ S+NG +
Sbjct: 28 TETFYTIGRSPR-ADIRIKSQFVSRIHAVLVRKSSDDVQAAYRIIDGDEDGQSSVNGLMI 86
Query: 196 NGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQNSE 231
NG K+ + GD I G + +
Sbjct: 87 NGKKV---QEHIIQTGDEIVMGPQVSVRYEYRRRDQ 119
>2xt9_B Putative signal transduction protein GARA; lyase-signaling protein
complex, KDH, KGD; HET: TPP; 2.20A {Mycobacterium
smegmatis}
Length = 115
Score = 57.0 bits (138), Expect = 5e-11
Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 12/94 (12%)
Query: 138 RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197
Q GR+ SDI + + S +HA E L ++D+ S+NGT+VN
Sbjct: 29 DQPTTSAGRHPD-SDIFLDDVTVSRRHA-----EFRLEGGEFQ---VVDVGSLNGTYVNR 79
Query: 198 MKIAPLTYVELFEGDVIEFGLSTREYVLLHQNSE 231
+ L GD ++ G ++ ++ +
Sbjct: 80 EPV---DSAVLANGDEVQIGKFRLVFLTGPKSDD 110
>1r21_A Antigen KI-67; beta sandwich, cell cycle; NMR {Homo sapiens} SCOP:
b.26.1.2 PDB: 2aff_A*
Length = 128
Score = 57.5 bits (139), Expect = 6e-11
Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 11/80 (13%)
Query: 138 RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197
S + GR + DI I+ S QH ++ ++ + L + S N T VNG
Sbjct: 31 SLSTCLFGRGIE-CDIRIQLPVVSKQHC-----KIEIHEQEAI---LHNFSSTNPTQVNG 81
Query: 198 MKIAPLTYVELFEGDVIEFG 217
I V L GDVI
Sbjct: 82 SVID--EPVRLKHGDVITII 99
>3po8_A RV0020C protein, putative uncharacterized protein TB39.8; FHA
domain, synthetic peptide, peptide binding protein;
1.50A {Mycobacterium tuberculosis} PDB: 3poa_A* 2lc1_A
Length = 100
Score = 56.5 bits (137), Expect = 7e-11
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 138 RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197
R+ + IIGR + + S +H E+ + + L DL S NGT VN
Sbjct: 21 REGSNIIGRGQD-AQFRLPDTGVSRRHL-----EIRWDGQVAL---LADLNSTNGTTVNN 71
Query: 198 MKIAPLTYVELFEGDVIEFGLST 220
+ +L +GDVI G S
Sbjct: 72 APV---QEWQLADGDVIRLGHSE 91
>2kb3_A Oxoglutarate dehydrogenase inhibitor; forkhead-associated domain,
kinase substrate, GARA, FHA, cytoplasm, phosphoprotein;
HET: TPO; NMR {Corynebacterium glutamicum} PDB: 2kb4_A
Length = 143
Score = 55.6 bits (134), Expect = 3e-10
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 12/86 (13%)
Query: 139 QSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGM 198
Q GR+ + SDI + + S +HA + E ++D+ S+NGT+VN
Sbjct: 65 QPTTTAGRHPE-SDIFLDDVTVSRRHAEFRINEGEF--------EVVDVGSLNGTYVNRE 115
Query: 199 KIAPLTYVELFEGDVIEFGLSTREYV 224
+ GD I+ G ++
Sbjct: 116 PRNA---QVMQTGDEIQIGKFRLVFL 138
>3oun_A Putative uncharacterized protein TB39.8; peptidoglycan, Ser/Thr
kinase, pseudokinase, FHA domain, REG phosphorylation;
HET: TPO; 2.71A {Mycobacterium tuberculosis}
Length = 157
Score = 55.7 bits (134), Expect = 4e-10
Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 12/83 (14%)
Query: 138 RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197
R+ + IIGR + + S +H E+ + + L DL S NGT VN
Sbjct: 83 REGSNIIGRGQD-AQFRLPDTGVSRRHL-----EIRWDGQVAL---LADLNSTNGTTVNN 133
Query: 198 MKIAPLTYVELFEGDVIEFGLST 220
+ +L +GDVI G S
Sbjct: 134 APV---QEWQLADGDVIRLGHSE 153
>2kfu_A RV1827 PThr 22; FHA domain, phosphorylation, intramolecular
interaction, glutamate metabolism, phosphoprotein,
protein binding; HET: TPO; NMR {Mycobacterium
tuberculosis} PDB: 2kkl_A
Length = 162
Score = 55.3 bits (133), Expect = 6e-10
Identities = 21/94 (22%), Positives = 38/94 (40%), Gaps = 12/94 (12%)
Query: 138 RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197
Q+ GR+ SDI + + S +HA + ++D+ S+NGT+VN
Sbjct: 73 DQAITSAGRHPD-SDIFLDDVTVSRRHAEFRLEN--------NEFNVVDVGSLNGTYVNR 123
Query: 198 MKIAPLTYVELFEGDVIEFGLSTREYVLLHQNSE 231
+ L GD ++ G ++ + E
Sbjct: 124 EPVDS---AVLANGDEVQIGKFRLVFLTGPKQGE 154
>3huf_A DNA repair and telomere maintenance protein NBS1; NBS1, FHA domain,
BRCT domain, phosphoprotein binding, phosp binding, DNA
repair; HET: DNA TPO; 2.15A {Schizosaccharomyces pombe}
PDB: 3hue_A* 3i0m_A* 3i0n_A*
Length = 325
Score = 56.8 bits (136), Expect = 9e-10
Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 5/97 (5%)
Query: 138 RQSAYIIGRNAK--VSDILIRHCSCSNQHAVLQYRELSLNNTRVVRP---YLMDLKSMNG 192
YI+GRN S I + S S +HA S + P + DL + G
Sbjct: 19 FPGTYIVGRNVSDDSSHIQVISKSISKRHARFTILTPSEKDYFTGGPCEFEVKDLDTKFG 78
Query: 193 TFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQN 229
T VN + + I+ G ++
Sbjct: 79 TKVNEKVVGQNGDSYKEKDLKIQLGKCPFTINAYWRS 115
>1dmz_A Protein (protein kinase SPK1); beta-sandwich, antiparallel
beta-sheets, transferase; NMR {Saccharomyces cerevisiae}
SCOP: b.26.1.2 PDB: 1fhq_A 1fhr_A* 1j4k_A* 1j4l_A*
1k2m_A* 1k2n_A*
Length = 158
Score = 54.8 bits (131), Expect = 1e-09
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 122 LYPFKNHQPLPIMYIHR-QSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVV 180
L P + + I + + + IGR+ + I S H + + ++ +
Sbjct: 8 LKPLPDSIIQESLEIQQGVNPFFIGRSEDC-NCKIEDNRLSRVHCFIFKKRHAVGKSMYE 66
Query: 181 RP-------YLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEF 216
P + N +++N ++ T L +GD I+
Sbjct: 67 SPAQGLDDIWYCHT-GTNVSYLNNNRMIQGTKFLLQDGDEIKI 108
>1qu5_A Protein kinase SPK1; FHA, RAD53, transferase; NMR {Saccharomyces
cerevisiae} SCOP: b.26.1.2
Length = 182
Score = 53.3 bits (127), Expect = 5e-09
Identities = 17/103 (16%), Positives = 37/103 (35%), Gaps = 10/103 (9%)
Query: 122 LYPFKNHQPLPIMYIHR-QSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVV 180
L P + + I + + + IGR+ + I S H + + ++ +
Sbjct: 32 LKPLPDSIIQESLEIQQGVNPFFIGRSEDC-NCKIEDNRLSRVHCFIFKKRHAVGKSMYE 90
Query: 181 RP-------YLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEF 216
P + N +++N ++ T L +GD I+
Sbjct: 91 SPAQGLDDIWYCHT-GTNVSYLNNNRMIQGTKFLLQDGDEIKI 132
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase,
FHA domain, ATP-binding, cell cycle, mutation,
LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens}
PDB: 3i6w_A
Length = 419
Score = 50.8 bits (122), Expect = 9e-08
Identities = 25/116 (21%), Positives = 40/116 (34%), Gaps = 16/116 (13%)
Query: 115 PSQYKW-RLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDIL--------IRHCSCSNQHA 165
P+ W RL+ + Y GR+ ++ + S +H
Sbjct: 5 PTPAPWARLWAL--QDGFANLEC-VNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHF 61
Query: 166 VLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTR 221
+ +RE+ N+ + Y+ D S NGTFVN + L I LS
Sbjct: 62 RI-FREVGPKNSYIA--YIEDH-SGNGTFVNTELVGKGKRRPLNNNSEIALSLSRN 113
>1wln_A Afadin; beta sandwich, FHA domain, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Mus musculus} SCOP: b.26.1.2
Length = 120
Score = 42.2 bits (99), Expect = 2e-05
Identities = 16/87 (18%), Positives = 29/87 (33%), Gaps = 11/87 (12%)
Query: 132 PIMYIHRQSAYIIGR-NAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSM 190
P +Y + S +G + I + H L + +
Sbjct: 28 PKLYRLQLSVTEVGTEKFDDNSIQLFGPGIQPHHCDLTNMD--------GVVTVTPRSMD 79
Query: 191 NGTFVNGMKIAPLTYVELFEGDVIEFG 217
T+V+G +I+ T L G ++FG
Sbjct: 80 AETYVDGQRISETT--MLQSGMRLQFG 104
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 43.3 bits (101), Expect = 5e-05
Identities = 23/169 (13%), Positives = 45/169 (26%), Gaps = 36/169 (21%)
Query: 83 SEDIAVKRKLDILKRSTLRPIVIYYEPKDAKLPSQYKWRLYPFK--NHQPLPIMYIHRQS 140
R L + + + + L YK+ + P K QP +
Sbjct: 59 DAVSGTLRLFWTLLS---KQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMT-----R 110
Query: 141 AYIIGRNAKVSDI-LIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMK 199
YI R+ +D + + S L+ R+ L++L+ ++G+
Sbjct: 111 MYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-----------LLELRPAKNVLIDGVL 159
Query: 200 -----------IAPLTYVELFEGDV--IEFGLSTR-EYVLLHQNSECLQ 234
+ + + E VL Q
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208
Score = 42.5 bits (99), Expect = 7e-05
Identities = 34/213 (15%), Positives = 68/213 (31%), Gaps = 46/213 (21%)
Query: 49 SDKTTRTPDDSPVTECHDSSPVKIRREHASTFVASEDIAVKRKLDILKRSTL-RPIVIYY 107
D V + H S V+ + + ++ + I ++ K+ + L R IV +Y
Sbjct: 397 FDVIKSDVMVV-VNKLHKYSLVEKQPKESTISI--PSIYLELKVKLENEYALHRSIVDHY 453
Query: 108 EPKDAKLPSQY-KWRLYP------FKNHQPLPIMYIHRQSAYIIGRNAKVSDIL------ 154
+P + L P F +H I + H ++ R +
Sbjct: 454 -----NIPKTFDSDDLIPPYLDQYFYSH----IGH-HLKNIEHPERMTLFRMVFLDFRFL 503
Query: 155 ---IRH-----CSCSNQHAVLQ----YRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIAP 202
IRH + + LQ Y+ +N + + F+ KI
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL----DFL--PKIEE 557
Query: 203 LTYVELFEGDVIEFGLSTREYVLLHQNSECLQR 235
+ D++ L + + + + +QR
Sbjct: 558 NLICSKYT-DLLRIALMAEDEAIFEEAHKQVQR 589
Score = 42.5 bits (99), Expect = 7e-05
Identities = 23/145 (15%), Positives = 51/145 (35%), Gaps = 35/145 (24%)
Query: 56 PDDSPVTECHDSSPVKIR------REHASTFVASEDIAVKRKLDILKRS--TLRPIVI-- 105
P D P E ++P ++ R+ +T+ + + + I++ S L P
Sbjct: 315 PQDLPR-EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRK 373
Query: 106 YYE-----PKDAKLPSQ---YKWRLYPFKNHQPLPIM-YIHRQSAYIIGRNAKVS----- 151
++ P A +P+ W + + ++ +H+ S ++ + K S
Sbjct: 374 MFDRLSVFPPSAHIPTILLSLIW--FDVIKSDVMVVVNKLHKYS--LVEKQPKESTISIP 429
Query: 152 DILIR-HCSCSNQ---HAVL--QYR 170
I + N+ H + Y
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYN 454
>1ujx_A Polynucleotide kinase 3'-phosphatase; DNA repair, FHA domain,
beta-sandwich, antiparallel beta-sheets, phosphopeptide
binding motif; NMR {Mus musculus} SCOP: b.26.1.2
Length = 119
Score = 39.3 bits (91), Expect = 2e-04
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 10/97 (10%)
Query: 129 QPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLK 188
P PI A ++GR + CS L + V +
Sbjct: 25 GPPPIFLPSDGQALVLGRG---PLTQVTDRKCSRNQVELIA---DPESRTV----AVKQL 74
Query: 189 SMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVL 225
+N + V ++ P L GDV+ L
Sbjct: 75 GVNPSTVGVQELKPGLSGSLSLGDVLYLVNGLYPLTL 111
>2g1l_A Kinesin-like protein KIF1C; transport, FHA domain, structural
genomics consortium, kines transport protein; 2.60A
{Homo sapiens} SCOP: b.26.1.2
Length = 104
Score = 36.5 bits (84), Expect = 0.001
Identities = 15/85 (17%), Positives = 29/85 (34%), Gaps = 8/85 (9%)
Query: 133 IMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNG 192
++Y + +G+ DI + QH + + V ++
Sbjct: 19 LLYHIKDGVTRVGQ--VDMDIKLTGQFIREQHCLFRSIPQPDGEVVVT----LEPCEGAE 72
Query: 193 TFVNGMKIAPLTYVELFEGDVIEFG 217
T+VNG + + L G+ I G
Sbjct: 73 TYVNGKLVT--EPLVLKSGNRIVMG 95
>2brf_A Bifunctional polynucleotide phosphatase/kinase;
hydrolase/transferase, FHA, forkhead-associated, PNKP,
PNK, polynucleotide kinase 3' phosphatase; 1.40A {Homo
sapiens} SCOP: b.26.1.2 PDB: 2w3o_A* 1yjm_A*
Length = 110
Score = 35.8 bits (82), Expect = 0.002
Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 11/97 (11%)
Query: 120 WRLYPFKNHQPLPIMYI-HRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTR 178
RL+ P +++ A ++GR + CS L
Sbjct: 8 GRLWLESPPGEAPPIFLPSDGQALVLGRG---PLTQVTDRKCSRTQVELV---ADPETRT 61
Query: 179 VVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIE 215
V + +N + ++ P L GD +
Sbjct: 62 V----AVKQLGVNPSTTGTQELKPGLEGSLGVGDTLY 94
>3fm8_A Kinesin-like protein KIF13B; kinesin, GAP, GTPase activation,
structural genomics consort ATP-binding, cytoskeleton,
microtubule, motor protein, NUCL binding; 2.30A {Homo
sapiens} PDB: 3mdb_A*
Length = 124
Score = 35.7 bits (82), Expect = 0.003
Identities = 16/76 (21%), Positives = 30/76 (39%), Gaps = 11/76 (14%)
Query: 142 YIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIA 201
+IG DI + +H ++ ++ P + TFVNG ++
Sbjct: 50 TLIGSANS-QDIQLCGMGILPEHCIIDITS---EGQVMLTP-----QKNTRTFVNGSSVS 100
Query: 202 PLTYVELFEGDVIEFG 217
+ ++L GD I +G
Sbjct: 101 --SPIQLHHGDRILWG 114
>1yj5_C 5' polynucleotide kinase-3' phosphatase FHA domai; beta sandwich,
P-loop, transferase; 2.80A {Mus musculus} SCOP: b.26.1.2
Length = 143
Score = 34.0 bits (77), Expect = 0.014
Identities = 18/97 (18%), Positives = 28/97 (28%), Gaps = 10/97 (10%)
Query: 129 QPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLK 188
P PI A ++GR + CS L + V +
Sbjct: 18 GPPPIFLPSDGQALVLGRG---PLTQVTDRKCSRNQVELIA---DPESRTV----AVKQL 67
Query: 189 SMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVL 225
+N + V ++ P L GDV+ L
Sbjct: 68 GVNPSTVGVHELKPGLSGSLSLGDVLYLVNGLYPLTL 104
>3kt9_A Aprataxin; FHA domain, beta sandwich, beta sheet, AMP hydrolase,
alternative splicing, disease mutation, DNA damage, DNA
repair, DNA-binding; 1.65A {Homo sapiens}
Length = 102
Score = 29.9 bits (67), Expect = 0.21
Identities = 18/86 (20%), Positives = 30/86 (34%), Gaps = 10/86 (11%)
Query: 130 PLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKS 189
+ + A +IGR + I CS Q L+ N V +
Sbjct: 13 RHQRIRLPHLEAVVIGRG---PETKITDKKCSRQQVQLK---AECNKGYV----KVKQVG 62
Query: 190 MNGTFVNGMKIAPLTYVELFEGDVIE 215
+N T ++ + I V+L G V+
Sbjct: 63 VNPTSIDSVVIGKDQEVKLQPGQVLH 88
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.1 bits (64), Expect = 0.74
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 40 EKTSRKRKHSDKTTRTPDDSP 60
EK + K+ + D +P
Sbjct: 18 EKQALKKLQASLKLYADDSAP 38
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 28.9 bits (64), Expect = 1.2
Identities = 10/54 (18%), Positives = 18/54 (33%), Gaps = 10/54 (18%)
Query: 43 SRKRKHSDKTTRTPDDSPVTECHD--SSPVKIRREHAST--------FVASEDI 86
+R+ R P+ + V C + P KI + V S+ +
Sbjct: 3 TRESIDKRAGRRGPNLNIVLTCPECKVYPPKIVERFSEGDVVCALCGLVLSDKL 56
>4a0e_A YSCD, type III secretion protein; transport protein, SAD phasing,
type III secretion system; 2.04A {Yersinia pestis}
Length = 123
Score = 27.8 bits (61), Expect = 1.8
Identities = 15/79 (18%), Positives = 24/79 (30%), Gaps = 12/79 (15%)
Query: 139 QSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGM 198
+ G + SDI++ + H VL E + L D G+
Sbjct: 23 HGRCVFGSDPLQSDIVLSDSEIAPVHLVLMVDEEGI--------RLTDSA--EPLLQEGL 72
Query: 199 KIAPLTYVELFEGDVIEFG 217
+ L G +E G
Sbjct: 73 PVPLG--TLLRAGSCLEVG 89
>2qfy_A Isocitrate dehydrogenase [NADP]; rossmann fold, oxidoreductase;
HET: AKG; 2.10A {Saccharomyces cerevisiae} PDB: 2qfw_A*
2qfx_A* 2qfv_A*
Length = 427
Score = 26.3 bits (57), Expect = 9.4
Identities = 8/36 (22%), Positives = 14/36 (38%)
Query: 105 IYYEPKDAKLPSQYKWRLYPFKNHQPLPIMYIHRQS 140
+ Y+P D ++Y +K MY +S
Sbjct: 169 LVYKPSDPTTAQPQTLKVYDYKGSGVAMAMYNTDES 204
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0510 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,420,789
Number of extensions: 187358
Number of successful extensions: 338
Number of sequences better than 10.0: 1
Number of HSP's gapped: 307
Number of HSP's successfully gapped: 41
Length of query: 238
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 147
Effective length of database: 4,160,982
Effective search space: 611664354
Effective search space used: 611664354
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.9 bits)