RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13346
(238 letters)
>d1uhta_ b.26.1.2 (A:) FHA domain containing protein At4G14490
{Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 118
Score = 74.7 bits (183), Expect = 6e-18
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 8/109 (7%)
Query: 120 WRLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRV 179
RL K + + S +GR + ++I I+ S +H ++
Sbjct: 13 LRLVFVKGPREGDALDYKPGSTIRVGRIVRGNEIAIKDAGISTKHLRIESDS-------- 64
Query: 180 VRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQ 228
+ DL S NGT +N + P T V L +GDVI+ G T V
Sbjct: 65 GNWVIQDLGSSNGTLLNSNALDPETSVNLGDGDVIKLGEYTSILVNFVS 113
>d1mzka_ b.26.1.2 (A:) Kinase associated protein phosphatase {Thale
cress (Arabidopsis thaliana) [TaxId: 3702]}
Length = 122
Score = 65.9 bits (160), Expect = 1e-14
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 15/98 (15%)
Query: 142 YIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGMKIA 201
+GR + SD+ ++ S +HA + + L+D+ S+NGT VN I+
Sbjct: 32 VKLGRVSP-SDLALKDSEVSGKHAQITWNSTKFKW------ELVDMGSLNGTLVNSHSIS 84
Query: 202 --------PLTYVELFEGDVIEFGLSTREYVLLHQNSE 231
VEL D+I G +T+ YV + +E
Sbjct: 85 HPDLGSRKWGNPVELASDDIITLGTTTKVYVRISSQNE 122
>d1dmza_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 158
Score = 66.0 bits (160), Expect = 3e-14
Identities = 17/113 (15%), Positives = 39/113 (34%), Gaps = 10/113 (8%)
Query: 122 LYPFKNHQPLPIMYIHR-QSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVV 180
L P + + I + + + IGR+ + I S H + + ++ +
Sbjct: 8 LKPLPDSIIQESLEIQQGVNPFFIGRSED-CNCKIEDNRLSRVHCFIFKKRHAVGKSMYE 66
Query: 181 RP-------YLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLL 226
P + N +++N ++ T L +GD I+ ++
Sbjct: 67 SPAQGLDDIWYCHT-GTNVSYLNNNRMIQGTKFLLQDGDEIKIIWDKNNKFVI 118
>d1g6ga_ b.26.1.2 (A:) Phosphotyrosine binding domain of Rad53
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 127
Score = 53.6 bits (128), Expect = 5e-10
Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 139 QSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGM 198
+ + GRN L SN+H + E L++ S NGT++NG
Sbjct: 35 KKVWTFGRNPACDYHLGNISRLSNKHFQILLGEDGN--------LLLNDISTNGTWLNGQ 86
Query: 199 KIAPLTYVELFEGDVIEFGLSTREYVL 225
K+ + L +GD I G+ +L
Sbjct: 87 KVEKNSNQLLSQGDEITVGVGVESDIL 113
>d1gxca_ b.26.1.2 (A:) Chk2 kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 116
Score = 53.3 bits (127), Expect = 6e-10
Identities = 16/116 (13%), Positives = 36/116 (31%), Gaps = 9/116 (7%)
Query: 121 RLYPFKN---HQPLP--IMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLN 175
RL+ ++ + + R + + + ++ + S +H +
Sbjct: 4 RLWALQDGFANLECVNDNYWFGRDKSCEYCFDEPLLKRTDKYRTYSKKHFRIFRE----V 59
Query: 176 NTRVVRPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQNSE 231
+ ++ S NGTFVN + L I LS + + +
Sbjct: 60 GPKNSYIAYIEDHSGNGTFVNTELVGKGKRRPLNNNSEIALSLSRNKVFVFFDLTV 115
>d2ff4a3 b.26.1.2 (A:284-382) Probable regulatory protein EmbR,
C-terminal domain {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 99
Score = 50.0 bits (119), Expect = 7e-09
Identities = 22/80 (27%), Positives = 34/80 (42%), Gaps = 11/80 (13%)
Query: 138 RQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNG 197
+ +A IGR +DI++ + S HAV+ + DL+S NG V
Sbjct: 21 QAAATRIGRLHD-NDIVLDSANVSRHHAVIVDTG--------TNYVINDLRSSNGVHVQH 71
Query: 198 MKIAPLTYVELFEGDVIEFG 217
+I + V L +GD I
Sbjct: 72 ERIR--SAVTLNDGDHIRIC 89
>d2g1la1 b.26.1.2 (A:498-599) Kinesin-like protein kif1c {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 49.3 bits (117), Expect = 1e-08
Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 9/95 (9%)
Query: 133 IMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNG 192
++Y + +G+ DI + QH + + ++
Sbjct: 17 LLYHIKDGVTRVGQVDM--DIKLTGQFIREQHCLFRSIP----QPDGEVVVTLEPCEGAE 70
Query: 193 TFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLH 227
T+VNG + + L G+ I G + H
Sbjct: 71 TYVNGKLVTE--PLVLKSGNRIVMG-KNHVFRFNH 102
>d1lgpa_ b.26.1.2 (A:) Cell cycle checkpoint protein Chfr {Human
(Homo sapiens) [TaxId: 9606]}
Length = 113
Score = 49.5 bits (117), Expect = 1e-08
Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 8/102 (7%)
Query: 121 RLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVV 180
RL + P + + ++ + IGR + S H + E
Sbjct: 6 RLLRLGAEEGEPHVLLRKRE-WTIGRRRGCDLSFPSNKLVSGDHCRIVVDE-------KS 57
Query: 181 RPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTRE 222
++ S +GT +N +K+ L GDVI E
Sbjct: 58 GQVTLEDTSTSGTVINKLKVVKKQTCPLQTGDVIYLVYRKNE 99
>d2piea1 b.26.1.2 (A:13-139) Ubiquitin ligase protein RNF8 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 127
Score = 46.4 bits (109), Expect = 2e-07
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 19/109 (17%)
Query: 134 MYIHRQSAYIIGRNAKVSDILIRHCSC----SNQHAVLQYRELSLNNTRVVRPYLMDLKS 189
+ + +GR V + C S H VL+ + +MD KS
Sbjct: 18 LLLEDGCEVTVGRGFGV-TYQLVSKICPLMISRNHCVLKQNPEG-------QWTIMDNKS 69
Query: 190 MNGTFVNGMKIAPLTYVELFEGDVIEFGLS-------TREYVLLHQNSE 231
+NG ++N ++ PL + +GD I+ G+ EY + ++ E
Sbjct: 70 LNGVWLNRARLEPLRVYSIHQGDYIQLGVPLENKENAEYEYEVTEEDWE 118
>d2affa1 b.26.1.2 (A:3-100) Antigen ki-67 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 98
Score = 44.3 bits (104), Expect = 6e-07
Identities = 25/85 (29%), Positives = 32/85 (37%), Gaps = 11/85 (12%)
Query: 139 QSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVVRPYLMDLKSMNGTFVNGM 198
S + GR + DI I+ S QH ++ E L + S N T VNG
Sbjct: 22 LSTCLFGRGIE-CDIRIQLPVVSKQHCKIEIHE--------QEAILHNFSSTNPTQVNGS 72
Query: 199 KIAPLTYVELFEGDVIEFGLSTREY 223
I V L GDVI + Y
Sbjct: 73 VIDE--PVRLKHGDVITIIDRSFRY 95
>d2brfa1 b.26.1.2 (A:8-108) Polynucleotide kinase 3'-phosphatase
{Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 41.0 bits (95), Expect = 1e-05
Identities = 13/108 (12%), Positives = 27/108 (25%), Gaps = 9/108 (8%)
Query: 121 RLYPFKNHQPLPIMYIHRQSAYIIGRNAKVSDILIRHCSCSNQHAVLQYRELSLNNTRVV 180
RL+ P +++ ++ + CS L
Sbjct: 2 RLWLESPPGEAPPIFLPSDGQALVLGR--GPLTQVTDRKCSRTQVELVADP-------ET 52
Query: 181 RPYLMDLKSMNGTFVNGMKIAPLTYVELFEGDVIEFGLSTREYVLLHQ 228
R + +N + ++ P L GD + L +
Sbjct: 53 RTVAVKQLGVNPSTTGTQELKPGLEGSLGVGDTLYLVNGLHPLTLRWE 100
>d1tj1a1 a.176.1.1 (A:89-261) N-terminal domain of bifunctional PutA
protein {Escherichia coli [TaxId: 562]}
Length = 173
Score = 26.0 bits (57), Expect = 3.8
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 208 LFEGDVIEFGLSTREYVLLHQNSECLQR 235
+ +G + EF LS++E V L +E L R
Sbjct: 59 MVQGLLQEFSLSSQEGVALMCLAEALLR 86
>d1y5ia2 c.81.1.1 (A:1-1074) Respiratory nitrate reductase 1 alpha
chain {Escherichia coli [TaxId: 562]}
Length = 1074
Score = 25.2 bits (54), Expect = 8.7
Identities = 9/37 (24%), Positives = 14/37 (37%)
Query: 19 PKPSSRSYDGVPVMKPTDVSTEKTSRKRKHSDKTTRT 55
+ DG + T+ E R+R DK R+
Sbjct: 11 KQKGETFADGHGQLLNTNRDWEDGYRQRWQHDKIVRS 47
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.132 0.389
Gapped
Lambda K H
0.267 0.0483 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 843,680
Number of extensions: 37761
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's gapped: 77
Number of HSP's successfully gapped: 14
Length of query: 238
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 155
Effective length of database: 1,268,006
Effective search space: 196540930
Effective search space used: 196540930
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (24.0 bits)