BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13347
(339 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2EBT|A Chain A, Solution Structure Of Three Tandem Repeats Of Zf-C2h2
Domains From Human Kruppel-Like Factor 5
Length = 100
Score = 88.6 bits (218), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 61/102 (59%), Gaps = 14/102 (13%)
Query: 131 DRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRF 190
+++++H C GC KVY K+SHL+AHLR HTGE+P+ CTW+ C RF RSDEL R
Sbjct: 11 EKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDELT----RH 66
Query: 191 GIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
+ T K FQC C++ F RSDHL H+K H
Sbjct: 67 YRKHTGA----------KPFQCGVCNRSFSRSDHLALHMKRH 98
>pdb|2WBU|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 90
Score = 82.4 bits (202), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 54/101 (53%), Gaps = 14/101 (13%)
Query: 132 RKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFG 191
R H C GC K Y K+SHL+AHLR HTGE+P+ C W CG +F RSDEL + +
Sbjct: 3 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 62
Query: 192 IERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
R FQC +C + F RSDHL H+K H
Sbjct: 63 GHRP--------------FQCQKCDRAFSRSDHLALHMKRH 89
>pdb|2WBS|A Chain A, Crystal Structure Of The Zinc Finger Domain Of Klf4 Bound
To Its Target Dna
Length = 89
Score = 82.0 bits (201), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/101 (43%), Positives = 54/101 (53%), Gaps = 14/101 (13%)
Query: 132 RKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFG 191
R H C GC K Y K+SHL+AHLR HTGE+P+ C W CG +F RSDEL + +
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRHYRKHT 61
Query: 192 IERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
R FQC +C + F RSDHL H+K H
Sbjct: 62 GHRP--------------FQCQKCDRAFSRSDHLALHMKRH 88
>pdb|2JP9|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2JPA|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
pdb|2PRT|A Chain A, Structure Of The Wilms Tumor Suppressor Protein Zinc
Finger Domain Bound To Dna
Length = 119
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 61/104 (58%), Gaps = 14/104 (13%)
Query: 130 ADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGR 189
A K+ +C GCNK Y K SHL+ H R HTGE+P+ C ++ C +RF+RSD+L+ +
Sbjct: 1 ASEKRPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRH--- 57
Query: 190 FGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHS 233
+R + P FQC C +KF RSDHL+ H +TH+
Sbjct: 58 ---QRRHTGVKP--------FQCKTCQRKFSRSDHLKTHTRTHT 90
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/41 (51%), Positives = 28/41 (68%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
C + + ++ HL+ H R HTGE+PF C W C K+F RSDEL
Sbjct: 72 CQRKFSRSDHLKTHTRTHTGEKPFSCRWPSCQKKFARSDEL 112
>pdb|2EPA|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domains
From Human Krueppel-Like Factor 10
Length = 72
Score = 71.2 bits (173), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 39/54 (72%)
Query: 130 ADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ R + HIC GC K Y K+SHL+AH R HTGE+PF C+W+ C +RF RSDEL
Sbjct: 12 SSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFARSDEL 65
>pdb|1VA1|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 1)
Length = 37
Score = 66.2 bits (160), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 29/33 (87%), Positives = 31/33 (93%)
Query: 132 RKKVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
+KK HICHI+GC KVYGKTSHLRAHLRWHTGER
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
>pdb|1MEY|C Chain C, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|F Chain F, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
pdb|1MEY|G Chain G, Crystal Structure Of A Designed Zinc Finger Protein Bound
To Dna
Length = 87
Score = 62.4 bits (150), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 36/90 (40%), Positives = 52/90 (57%), Gaps = 16/90 (17%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K + ++S+L+ H R HTGE+P+ C CGK F++S +LQ + +RT
Sbjct: 10 CGKSFSQSSNLQKHQRTHTGEKPYKCPE--CGKSFSQSSDLQKH------QRTHTG---- 57
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K F RSDHL +H +TH
Sbjct: 58 ----EKPYKCPECGKSFSRSDHLSRHQRTH 83
Score = 31.2 bits (69), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS---KTRCTSLVMNFSDNTVV 250
EK ++C EC K F +S +LQKH +TH+ +C +FS ++ +
Sbjct: 2 EKPYKCPECGKSFSQSSNLQKHQRTHTGEKPYKCPECGKSFSQSSDL 48
>pdb|2I13|A Chain A, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
pdb|2I13|B Chain B, Aart, A Six Finger Zinc Finger Designed To Recognize Ann
Triplets
Length = 190
Score = 61.2 bits (147), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/91 (38%), Positives = 46/91 (50%), Gaps = 16/91 (17%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K + + +HLRAH R HTGE+P+ C CGK F+R D L +
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQ--------------R 154
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTHS 233
T EK ++C EC K F R D L H +TH+
Sbjct: 155 THTGEKPYKCPECGKSFSRRDALNVHQRTHT 185
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 46/91 (50%), Gaps = 16/91 (17%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K + + ++LRAH R HTGE+P+ C CGK F++ L R
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHL--------------RAHQR 126
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTHS 233
T EK ++C EC K F R D+L H +TH+
Sbjct: 127 THTGEKPYKCPECGKSFSREDNLHTHQRTHT 157
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 49/105 (46%), Gaps = 16/105 (15%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNG--------------G 188
C K + ++ HL H R HTGE+P+ C CGK F+ +L + G
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTGEKPYKCPECG 84
Query: 189 RFGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHS 233
+ +R +R T EK + C EC K F + HL+ H +TH+
Sbjct: 85 KSFSQRANLRAHQRTHTGEKPYACPECGKSFSQLAHLRAHQRTHT 129
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS---KTRCTSLVMNFSDNTVVT 251
EK + C EC K F RSDHL +H +TH+ +C +FSD +T
Sbjct: 19 EKPYACPECGKSFSRSDHLAEHQRTHTGEKPYKCPECGKSFSDKKDLT 66
>pdb|1UBD|C Chain C, Co-Crystal Structure Of Human Yy1 Zinc Finger Domain Bound
To The Adeno-Associated Virus P5 Initiator Element
Length = 124
Score = 58.2 bits (139), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 56/103 (54%), Gaps = 14/103 (13%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIE 193
+VH+C C K + ++S L+ H HTGE+PF CT++ CGKRF+ L
Sbjct: 33 RVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL---------- 80
Query: 194 RTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
RT VRI T R C+KKF +S +L+ HI TH+K +
Sbjct: 81 RTHVRI--HTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAK 121
>pdb|1A1F|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
pdb|1A1G|A Chain A, Dsnr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
Length = 90
Score = 57.8 bits (138), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/100 (35%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
++ + C +E C++ + +S+L H+R HTG++PF C + C + F+RSD L
Sbjct: 2 ERPYACPVESCDRRFSDSSNLTRHIRIHTGQKPFQC--RICMRNFSRSDHLT-------- 51
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T +R T EK F C C +KF RSD ++H K H
Sbjct: 52 --THIR----THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1JK1|A Chain A, Zif268 D20a Mutant Bound To Wt Dna Site
pdb|1JK2|A Chain A, Zif268 D20a Mutant Bound To The Gct Dna Site
Length = 90
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
++ + C +E C++ + +++ L H+R HTG++PF C + C + F+RSD L
Sbjct: 2 ERPYACPVESCDRRFSRSAELTRHIRIHTGQKPFQC--RICMRNFSRSDHLT-------- 51
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T +R T EK F C C +KF RSD ++H K H
Sbjct: 52 --THIR----THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1A1I|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
pdb|1A1J|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gcgt Site)
pdb|1A1K|A Chain A, Radr (Zif268 Variant) Zinc Finger-Dna Complex (Gacc Site)
Length = 90
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 54/100 (54%), Gaps = 16/100 (16%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
++ + C +E C++ + +++ L H+R HTG++PF C + C + F+RSD L
Sbjct: 2 ERPYACPVESCDRRFSRSADLTRHIRIHTGQKPFQC--RICMRNFSRSDHLT-------- 51
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T +R T EK F C C +KF RSD ++H K H
Sbjct: 52 --THIR----THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1AAY|A Chain A, Zif268 Zinc Finger-Dna Complex
pdb|1A1L|A Chain A, Zif268 Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 56.6 bits (135), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
++ + C +E C++ + ++ L H+R HTG++PF C + C + F+RSD L
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLT-------- 51
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T +R T EK F C C +KF RSD ++H K H
Sbjct: 52 --THIR----THTGEKPFACDICGRKFARSDERKRHTKIH 85
>pdb|1P47|A Chain A, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
pdb|1P47|B Chain B, Crystal Structure Of Tandem Zif268 Molecules Complexed To
Dna
Length = 87
Score = 56.2 bits (134), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
++ + C +E C++ + ++ L H+R HTG++PF C + C + F+RSD L
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLT-------- 50
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T +R T EK F C C +KF RSD ++H K H
Sbjct: 51 --THIR----THTGEKPFACDICGRKFARSDERKRHTKIH 84
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 14/71 (19%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRS 222
ERP+ C + C +RF+RSDEL + +RI +K FQC C + F RS
Sbjct: 1 ERPYACPVESCDRRFSRSDELTRH----------IRIHTG----QKPFQCRICMRNFSRS 46
Query: 223 DHLQKHIKTHS 233
DHL HI+TH+
Sbjct: 47 DHLTTHIRTHT 57
>pdb|1ZAA|C Chain C, Zinc Finger-Dna Recognition: Crystal Structure Of A
Zif268- Dna Complex At 2.1 Angstroms
Length = 87
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
++ + C +E C++ + ++ L H+R HTG++PF C + C + F+RSD L
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHLT-------- 51
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T +R T EK F C C +KF RSD ++H K H
Sbjct: 52 --THIR----THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 14/71 (19%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRS 222
ERP+ C + C +RF+RSDEL + +RI +K FQC C + F RS
Sbjct: 2 ERPYACPVESCDRRFSRSDELTRH----------IRIHTG----QKPFQCRICMRNFSRS 47
Query: 223 DHLQKHIKTHS 233
DHL HI+TH+
Sbjct: 48 DHLTTHIRTHT 58
>pdb|1A1H|A Chain A, Qgsr (Zif268 Variant) Zinc Finger-Dna Complex (Gcac Site)
Length = 90
Score = 55.8 bits (133), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 53/100 (53%), Gaps = 16/100 (16%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
++ + C +E C++ + ++ L H+R HTG++PF C + C + F+RSD L
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRHIRIHTGQKPFQC--RICMRNFSRSDHLT-------- 51
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T +R T EK F C C +KF RSD ++H K H
Sbjct: 52 --THIR----THTGEKPFACDICGRKFARSDERKRHTKIH 85
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 14/71 (19%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRS 222
ERP+ C + C +RF++S L + +RI +K FQC C + F RS
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRH----------IRIHTG----QKPFQCRICMRNFSRS 47
Query: 223 DHLQKHIKTHS 233
DHL HI+TH+
Sbjct: 48 DHLTTHIRTHT 58
>pdb|2GLI|A Chain A, Five-Finger GliDNA COMPLEX
Length = 155
Score = 55.5 bits (132), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 36/117 (30%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 116 PALISTLFSCSLRTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGK 175
P + +R +K H C EGC K Y + +L+ HLR HTGE+P++C + C K
Sbjct: 48 PFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSK 107
Query: 176 RFTR-SDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKT 231
F+ SD + E+ V LP C K++ L+KH+KT
Sbjct: 108 AFSNASDRAKHQNRTHSNEKPYVCKLPG------------CTKRYTDPSSLRKHVKT 152
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 133 KKVHICHIEGCNKV---YGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVN 186
+K +CH GC++ + L H+R HTGE+P CT++ C K ++R + L+ +
Sbjct: 32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTH 88
>pdb|2RPC|A Chain A, Solution Structure Of The Tandem Zf-C2h2 Domains From The
Human Zinc Finger Protein Zic 3
Length = 155
Score = 50.4 bits (119), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 136 HICHIEGC---NKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
H+C+ E C K + L H+R HTGE+PF C + CGK F RS+ L+++
Sbjct: 58 HVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHK----- 112
Query: 193 ERTVVRILPMTWCREKRFQC--SECHKKFMRSDHLQKHIKTHSKTR 236
T EK F+C C ++F S +KH+ H+ +
Sbjct: 113 ---------RTHTGEKPFKCEFEGCDRRFANSSDRKKHMHVHTSDK 149
Score = 48.5 bits (114), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 33/56 (58%)
Query: 127 LRTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDE 182
+R +K C GC K++ ++ +L+ H R HTGE+PF C ++ C +RF S +
Sbjct: 82 IRVHTGEKPFPCPFPGCGKIFARSENLKIHKRTHTGEKPFKCEFEGCDRRFANSSD 137
>pdb|1F2I|G Chain G, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|H Chain H, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|I Chain I, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|J Chain J, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|K Chain K, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
pdb|1F2I|L Chain L, Cocrystal Structure Of Selected Zinc Finger Dimer Bound To
Dna
Length = 73
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 38/70 (54%), Gaps = 14/70 (20%)
Query: 164 RPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRSD 223
RP+ C + C +RF+RSDEL + +RI +K FQC C + F RSD
Sbjct: 18 RPYACPVESCDRRFSRSDELTRH----------IRI----HTGQKPFQCRICMRNFSRSD 63
Query: 224 HLQKHIKTHS 233
HL HI+TH+
Sbjct: 64 HLTTHIRTHT 73
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%), Gaps = 2/50 (4%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ + C +E C++ + ++ L H+R HTG++PF C + C + F+RSD L
Sbjct: 18 RPYACPVESCDRRFSRSDELTRHIRIHTGQKPFQC--RICMRNFSRSDHL 65
>pdb|1LLM|C Chain C, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
pdb|1LLM|D Chain D, Crystal Structure Of A Zif23-Gcn4 Chimera Bound To Dna
Length = 88
Score = 48.5 bits (114), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/60 (38%), Positives = 35/60 (58%), Gaps = 9/60 (15%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C + + ++ HL H+R HTGE+PF C CG++F RSDE + + R + ILP+
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFAC--DICGRKFARSDERKRH-------RDIQHILPI 59
Score = 34.3 bits (77), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 18/26 (69%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K FQC C + F RSDHL HI+TH+
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTHT 27
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 16/65 (24%)
Query: 164 RPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRSD 223
+PF C + C + F+RSD L T +R T EK F C C +KF RSD
Sbjct: 2 KPFQC--RICMRNFSRSDHLT----------THIR----THTGEKPFACDICGRKFARSD 45
Query: 224 HLQKH 228
++H
Sbjct: 46 ERKRH 50
>pdb|2YT9|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 345 In
Zinc Finger Protein 278
Length = 95
Score = 47.4 bits (111), Expect = 1e-05, Method: Composition-based stats.
Identities = 31/94 (32%), Positives = 40/94 (42%), Gaps = 22/94 (23%)
Query: 141 EGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL----QVNGGRFGIERTV 196
E C K++ HL H H+GE+P+ C CG RF R D + + + G G
Sbjct: 11 EICGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYHVRSHDGSVG----- 63
Query: 197 VRILPMTWCREKRFQCSECHKKFMRSDHLQKHIK 230
K + C C K F R DHL HIK
Sbjct: 64 -----------KPYICQSCGKGFSRPDHLNGHIK 86
>pdb|1SP2|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f2, Minimized Average Structure
pdb|1VA2|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 2)
Length = 31
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 164 RPFVCTWQFCGKRFTRSDELQ 184
RPF+CTW +CGKRFTRSDELQ
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQ 21
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 14/26 (53%), Positives = 18/26 (69%), Gaps = 2/26 (7%)
Query: 210 FQC--SECHKKFMRSDHLQKHIKTHS 233
F C S C K+F RSD LQ+H +TH+
Sbjct: 3 FMCTWSYCGKRFTRSDELQRHKRTHT 28
>pdb|2DLQ|A Chain A, Solution Structure Of The Tandem Four Zf-C2h2 Domain
Repeats Of Murine Gli-Kruppel Family Member Hkr3
Length = 124
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 20/109 (18%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERT------- 195
C+K + +L+ H R HTGE+PF C CGK + R + L + R + R+
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARNCMNRSEQVFTCS 70
Query: 196 ----------VVRILPMTWCREKRFQCSECHKKFMRSDHLQKH-IKTHS 233
+R+ ++ E ++CS C ++FM+ LQ H IK HS
Sbjct: 71 VCQETFRRRMELRLHMVSHTGEMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
>pdb|1VA3|A Chain A, Solution Structure Of Transcription Factor Sp1 Dna Binding
Domain (Zinc Finger 3)
pdb|1SP1|A Chain A, Nmr Structure Of A Zinc Finger Domain From Transcription
Factor Sp1f3, Minimized Average Structure
Length = 29
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K+F C EC K+FMRSDHL KHIKTH
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQ 26
>pdb|1TF3|A Chain A, Tfiiia Finger 1-3 Bound To Dna, Nmr, 22 Structures
Length = 92
Score = 42.7 bits (99), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 16/98 (16%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIE 193
K +IC C Y K L+AHL HTGE+PF C + C K FT L +
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGEKPFPCKEEGCEKGFTSLHHLTRH------- 54
Query: 194 RTVVRILPMTWCREKRFQCSE--CHKKFMRSDHLQKHI 229
+T EK F C C +F +++KH
Sbjct: 55 -------SLTHTGEKNFTCDSDGCDLRFTTKANMKKHF 85
Score = 37.4 bits (85), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 25/53 (47%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRF 190
C EGC K + HL H HTGE+ F C C RFT ++ + RF
Sbjct: 36 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRF 88
>pdb|1UN6|B Chain B, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|C Chain C, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|1UN6|D Chain D, The Crystal Structure Of A Zinc Finger - Rna Complex
Reveals Two Modes Of Molecular Recognition
pdb|2HGH|A Chain A, Transcription Factor Iiia Zinc Fingers 4-6 Bound To 5s
Rrna 55mer (Nmr Structure)
Length = 87
Score = 42.4 bits (98), Expect = 4e-04, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 135 VHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
+++CH E C K + K + L+ H HT + P+ C + C KRF+ L+
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK 50
Score = 29.3 bits (64), Expect = 3.2, Method: Composition-based stats.
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 16/74 (21%)
Query: 166 FVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSE--CHKKFMRSD 223
+VC ++ CGK F + ++L+V+ + + + LP ++C C K+F
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH------QFSHTQQLP--------YECPHEGCDKRFSLPS 47
Query: 224 HLQKHIKTHSKTRC 237
L++H K H+ C
Sbjct: 48 RLKRHEKVHAGYPC 61
>pdb|1TF6|A Chain A, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
pdb|1TF6|D Chain D, Co-crystal Structure Of Xenopus Tfiiia Zinc Finger Domain
Bound To The 5s Ribosomal Rna Gene Internal Control
Region
Length = 190
Score = 42.0 bits (97), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 28/50 (56%)
Query: 135 VHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
V++CH E C K + K + L+ H HT + P+ C + C KRF+ L+
Sbjct: 104 VYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK 153
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 33/115 (28%), Positives = 46/115 (40%), Gaps = 16/115 (13%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIE 193
K +IC C Y K L+AHL HTGE+PF C + C K FT L +
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRHS------ 64
Query: 194 RTVVRILPMTWCREKRFQCSE--CHKKFMRSDHLQKHIKTHSKTRCTSLVMNFSD 246
+T EK F C C +F +++KH + V +F +
Sbjct: 65 --------LTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICVYVCHFEN 111
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 50/134 (37%), Gaps = 48/134 (35%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGERPF------------------------------- 166
C EGC K + HL H HTGE+ F
Sbjct: 45 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKHFNRFHNIKICV 104
Query: 167 -VCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSE--CHKKFMRSD 223
VC ++ CGK F + ++L+V+ + + + LP ++C C K+F
Sbjct: 105 YVCHFENCGKAFKKHNQLKVH------QFSHTQQLP--------YECPHEGCDKRFSLPS 150
Query: 224 HLQKHIKTHSKTRC 237
L++H K H+ C
Sbjct: 151 RLKRHEKVHAGYPC 164
>pdb|2EE8|A Chain A, Solution Structure Of Three Zf-C2h2 Domains From Mouse
Protein Odd-Skipped-Related 2 Splicing Isoform 2
Length = 106
Score = 41.6 bits (96), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 46/108 (42%), Gaps = 19/108 (17%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRS 222
++ F+C +FCG+ FT+S L ++ ERT P T C CHK F R
Sbjct: 15 KKEFIC--KFCGRHFTKSYNLLIH------ERTHTDERPYT--------CDICHKAFRRQ 58
Query: 223 DHLQKHIKTHSKT---RCTSLVMNFSDNTVVTEDSKLELSGGSTGAGT 267
DHL+ H HSK +C F + + L + S A +
Sbjct: 59 DHLRDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQTSSPTAAS 106
Score = 40.8 bits (94), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 45/103 (43%), Gaps = 18/103 (17%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
KK IC + C + + K+ +L H R HT ERP+ C C K F R D L
Sbjct: 15 KKEFIC--KFCGRHFTKSYNLLIHERTHTDERPYTC--DICHKAFRRQDHL--------- 61
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKT 235
R +EK F+C EC K F +S L H H +T
Sbjct: 62 -----RDHRYIHSKEKPFKCQECGKGFCQSRTLAVHKTLHMQT 99
Score = 37.7 bits (86), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 33/59 (55%), Gaps = 4/59 (6%)
Query: 128 RTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVN 186
RT ++ + C I C+K + + HLR H H+ E+PF C Q CGK F +S L V+
Sbjct: 38 RTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSKEKPFKC--QECGKGFCQSRTLAVH 92
>pdb|1G2F|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
pdb|1G2F|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX
(Tatazf;clone #6)
Length = 90
Score = 41.6 bits (96), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 48/100 (48%), Gaps = 16/100 (16%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
++ + C +E C++ + + ++L H+R HTG++PF C + C + F++ L +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQQASLNAH------ 53
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
+R T EK F C C +KF +H K H
Sbjct: 54 ----IR----THTGEKPFACDICGRKFATLHTRTRHTKIH 85
>pdb|2J7J|A Chain A, Invariance Of The Zinc Finger Module: A Comparison Of The
Free Structure With Those In Nucleic-Acid Complexes
Length = 85
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 28/50 (56%)
Query: 135 VHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
+++CH E C K + K + L+ H HT + P+ C + C KRF+ L+
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLK 50
>pdb|2KMK|A Chain A, Gfi-1 Zinc Fingers 3-5 Complexed With Dna
Length = 82
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 44/91 (48%), Gaps = 16/91 (17%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K + ++S L HL H+ RP+ C Q+CGKRF + +++ + T +
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMK--------KHTFIHT--- 53
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK +C C K F +S +L H + H+
Sbjct: 54 ---GEKPHKCQVCGKAFSQSSNLITHSRKHT 81
>pdb|1G2D|C Chain C, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
pdb|1G2D|F Chain F, Structure Of A Cys2his2 Zinc FingerTATA BOX COMPLEX (CLONE
#2)
Length = 90
Score = 39.3 bits (90), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/104 (25%), Positives = 50/104 (48%), Gaps = 16/104 (15%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
++ + C +E C++ + + ++L H+R HTG++PF C + C + F++ L +
Sbjct: 2 ERPYACPVESCDRRFSQKTNLDTHIRIHTGQKPFQC--RICMRNFSQHTGLNQH------ 53
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
+R T EK F C C +KF +H K H + +
Sbjct: 54 ----IR----THTGEKPFACDICGRKFATLHTRDRHTKIHLRQK 89
>pdb|2ADR|A Chain A, Adr1 Dna-Binding Domain From Saccharomyces Cerevisiae,
Nmr, 25 Structures
Length = 60
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 7/56 (12%)
Query: 141 EGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL-----QVNGGRFG 191
E C + + + HL+ H R HT E+P+ C C + FTR D L +++ G G
Sbjct: 6 EVCTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLIRHAQKIHSGNLG 59
>pdb|1RIM|A Chain A, E6-Binding Zinc Finger (E6apc2)
Length = 33
Score = 38.5 bits (88), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 16/24 (66%), Positives = 18/24 (75%)
Query: 209 RFQCSECHKKFMRSDHLQKHIKTH 232
+F C EC K+FMRSDHL KHI H
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLH 25
>pdb|2ENT|A Chain A, Solution Structure Of The Second C2h2-Type Zinc Finger
Domain From Human Krueppel-Like Factor 15
Length = 48
Score = 38.5 bits (88), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 15/22 (68%), Positives = 17/22 (77%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQ 184
E+PF CTW CG RF+RSDEL
Sbjct: 10 EKPFACTWPGCGWRFSRSDELS 31
>pdb|2KFQ|A Chain A, Nmr Structure Of Fp1
Length = 32
Score = 37.4 bits (85), Expect = 0.011, Method: Composition-based stats.
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 210 FQCSECHKKFMRSDHLQKHIKT 231
F C C K+FMRSD L KHIKT
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>pdb|2CSH|A Chain A, Solution Structure Of Tandem Repeat Of The Zf-C2h2 Domains
Of Human Zinc Finger Protein 297b
Length = 110
Score = 37.0 bits (84), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 47/122 (38%), Gaps = 26/122 (21%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K + S H+ H G RP+ C CGK+F L G + I P
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCG--VCGKKFKMKHHL------VGHMKIHTGIKP- 65
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTRCTSLVMNFSDNTVVTEDSKLELSGGS 262
++C+ C K+FM D +H+ T CT S E + E SG S
Sbjct: 66 -------YECNICAKRFMWRDSFHRHV-----TSCTK-----SYEAAKAEQNTTEASGPS 108
Query: 263 TG 264
+G
Sbjct: 109 SG 110
>pdb|1X6E|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Zinc Finger Protein 24
Length = 72
Score = 36.6 bits (83), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
C K + ++S L H R HTGE+P+ C CGK F+++ L
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGL 58
Score = 34.3 bits (77), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 30/61 (49%), Gaps = 3/61 (4%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS---KTRCTSLVMNFSDNTVVTEDSKLELSGGST 263
EK + C EC K F RS L +H + H+ +C FS N+ + ++ SG S+
Sbjct: 12 EKPYGCVECGKAFSRSSILVQHQRVHTGEKPYKCLECGKAFSQNSGLINHQRIHTSGPSS 71
Query: 264 G 264
G
Sbjct: 72 G 72
>pdb|1XF7|A Chain A, High Resolution Nmr Structure Of The Wilms' Tumor
Suppressor Protein (Wt1) Finger 3
Length = 29
Score = 36.2 bits (82), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 15/26 (57%), Positives = 19/26 (73%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K FQC C +KF RSDHL+ H +TH+
Sbjct: 1 KPFQCKTCQRKFSRSDHLKTHTRTHT 26
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 143 CNKVYGKTSHLRAHLRWHTGER 164
C + + ++ HL+ H R HTGE+
Sbjct: 8 CQRKFSRSDHLKTHTRTHTGEK 29
>pdb|2EMV|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
859- 889) Of Human Zinc Finger Protein 268
Length = 44
Score = 35.4 bits (80), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 20/28 (71%)
Query: 206 REKRFQCSECHKKFMRSDHLQKHIKTHS 233
REK ++CSEC K F+R+ L H +THS
Sbjct: 9 REKPYECSECGKAFIRNSQLIVHQRTHS 36
>pdb|1RIK|A Chain A, E6-Binding Zinc Finger (E6apc1)
Length = 29
Score = 35.4 bits (80), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 209 RFQCSECHKKFMRSDHLQKHIKTHSKTR 236
+F C EC K+FMRSDHL HI H +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
>pdb|1U86|A Chain A, 321-Tw-322 Insertion Mutant Of The Third Zinc Finger Of
Bklf
Length = 35
Score = 34.7 bits (78), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 161 TGERPFVCTWQFCGKRFTRSDELQVNGGR 189
TG +PF CTW C + F+RSD L ++ R
Sbjct: 3 TGIKPFQCTWPDCDRSFSRSDHLALHRKR 31
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 17/27 (62%), Gaps = 2/27 (7%)
Query: 208 KRFQCS--ECHKKFMRSDHLQKHIKTH 232
K FQC+ +C + F RSDHL H K H
Sbjct: 6 KPFQCTWPDCDRSFSRSDHLALHRKRH 32
>pdb|2EMZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
628- 660) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 21/32 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTRCT 238
E+ F+C+EC K F R HL H++ HS+ + +
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHSREKSS 41
Score = 28.1 bits (61), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 143 CNKVYGKTSHLRAHLRWHTGER 164
C K +G+ SHL HLR H+ E+
Sbjct: 18 CGKGFGRRSHLAGHLRLHSREK 39
>pdb|2COT|A Chain A, Solution Structure Of The First And Second Zf-C2h2 Domain
Of Zinc Finger Protein 435
Length = 77
Score = 33.1 bits (74), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
C K + +S L H R HTGE+P+ C CGK F + L
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHL 62
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
+R++C EC K F S L KH +TH+
Sbjct: 17 RRYKCDECGKSFSHSSDLSKHRRTHT 42
>pdb|1P7A|A Chain A, Solution Stucture Of The Third Zinc Finger From Bklf
Length = 37
Score = 32.7 bits (73), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 14/25 (56%), Positives = 16/25 (64%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTH 232
K FQC +C + F RSDHL H K H
Sbjct: 10 KPFQCPDCDRSFSRSDHLALHRKRH 34
>pdb|2YTH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
479- 511) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.7 bits (73), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK FQC EC K+F ++ HL H + H+
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVHT 36
Score = 31.6 bits (70), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 13/25 (52%), Positives = 17/25 (68%)
Query: 141 EGCNKVYGKTSHLRAHLRWHTGERP 165
E C K + + SHL +H R HTGE+P
Sbjct: 16 EECGKRFTQNSHLHSHQRVHTGEKP 40
>pdb|2EM6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
199- 231) Of Human Zinc Finger Protein 224
Length = 46
Score = 32.3 bits (72), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + ++SHL+ H R HTGE+P
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C C K+F +S HLQ H + H+
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVHT 36
>pdb|1X6H|A Chain A, Solution Structures Of The C2h2 Type Zinc Finger Domain Of
Human Transcriptional Repressor Ctcf
Length = 86
Score = 32.3 bits (72), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 12/72 (16%)
Query: 158 RWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHK 217
R HTGE+P+ C+ C K F + L ++ R+ V F CS+C K
Sbjct: 8 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDPNFVPAA----------FVCSKCGK 55
Query: 218 KFMRSDHLQKHI 229
F R + + +H
Sbjct: 56 TFTRRNTMARHA 67
>pdb|1BHI|A Chain A, Structure Of Transactivation Domain Of Cre-Bp1ATF-2, Nmr,
20 Structures
Length = 38
Score = 32.3 bits (72), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 161 TGERPFVCTWQFCGKRFTRSDELQVN 186
+ ++PF+CT CG+RFT D L V+
Sbjct: 2 SDDKPFLCTAPGCGQRFTNEDHLAVH 27
>pdb|2EL5|A Chain A, Solution Structure Of The 18th Zf-C2h2 Domain From Human
Zinc Finger Protein 268
Length = 42
Score = 32.3 bits (72), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
E ++CSEC K F R D L H +TH+
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHA 34
>pdb|1U85|A Chain A, Arg326-Trp Mutant Of The Third Zinc Finger Of Bklf
Length = 33
Score = 32.3 bits (72), Expect = 0.41, Method: Composition-based stats.
Identities = 14/25 (56%), Positives = 15/25 (60%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTH 232
K FQC +C F RSDHL H K H
Sbjct: 6 KPFQCPDCDWSFSRSDHLALHRKRH 30
>pdb|2EMA|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
312- 344) Of Human Zinc Finger Protein 347
Length = 46
Score = 32.0 bits (71), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EKR++C+EC K F R+ L +H K H+
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIHT 36
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C KV+ + S L H + HTGE+P
Sbjct: 18 CGKVFSRNSQLSQHQKIHTGEKP 40
>pdb|3UK3|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|3UK3|D Chain D, Crystal Structure Of Znf217 Bound To Dna
pdb|4F2J|C Chain C, Crystal Structure Of Znf217 Bound To Dna, P6522 Crystal
Form
pdb|4IS1|C Chain C, Crystal Structure Of Znf217 Bound To Dna
pdb|4IS1|D Chain D, Crystal Structure Of Znf217 Bound To Dna
Length = 57
Score = 31.6 bits (70), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFC 173
C K + +L HLR HTGE+P+ C +FC
Sbjct: 10 CGKFFRSNYYLNIHLRTHTGEKPYKC--EFC 38
>pdb|2YTD|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
426- 458) Of Human Zinc Finger Protein 473
Length = 46
Score = 31.6 bits (70), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
EK ++CSEC K F R HL +H + H+ R
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIHTGYR 39
>pdb|2EMK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
668- 700) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + +T+HL H R HTGE+P
Sbjct: 18 CGKAFSQTTHLIQHQRVHTGEKP 40
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C EC K F ++ HL +H + H+
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVHT 36
>pdb|2DMD|A Chain A, Solution Structure Of The N-Terminal C2h2 Type
Zinc-Binding Domain Of The Zinc Finger Protein 64,
Isoforms 1 And 2
Length = 96
Score = 31.6 bits (70), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 16/93 (17%)
Query: 141 EGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRIL 200
E C K + + L+ H+R HTG +P+ C + C + +D +N +RI
Sbjct: 12 EVCGKCFSRKDKLKTHMRCHTGVKPYKC--KTCD--YAAADSSSLN--------KHLRI- 58
Query: 201 PMTWCREKRFQCSECHKKFMRSDHLQKHIKTHS 233
E+ F+C C S L H+++H+
Sbjct: 59 ---HSDERPFKCQICPYASRNSSQLTVHLRSHT 88
>pdb|2EM2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
584- 616) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + + HL +HLR HTGE+P
Sbjct: 18 CGKAFRQNIHLASHLRIHTGEKP 40
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK F+C EC K F ++ HL H++ H+
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIHT 36
>pdb|2YTK|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
396- 428) Of Human Zinc Finger Protein 347
Length = 46
Score = 31.6 bits (70), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 13/23 (56%), Positives = 16/23 (69%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C KV+ + SHL H R HTGE+P
Sbjct: 18 CGKVFTQNSHLTNHWRIHTGEKP 40
Score = 29.3 bits (64), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C+EC K F ++ HL H + H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIHT 36
>pdb|2EOZ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
809- 841) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.8 bits (68), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSK 234
EK + C+ C K F+ S HL +H++ H++
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVHTQ 37
>pdb|2EOJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
355- 385) Of Human Zinc Finger Protein 268
Length = 44
Score = 30.8 bits (68), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
E ++C EC K F R D L H KTHS
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHS 36
>pdb|7ZNF|A Chain A, Alternating Zinc Fingers In The Human Male Associated
Protein Zfy: 2d Nmr Structure Of An Even Finger And
Implications For "jumping-Linker" Dna Recognition
Length = 30
Score = 30.8 bits (68), Expect = 1.2, Method: Composition-based stats.
Identities = 15/30 (50%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKT-HSKTR 236
K +QC C K+F S +L+ HIKT HSK +
Sbjct: 1 KTYQCQYCEKRFADSSNLKTHIKTKHSKEK 30
>pdb|2EMC|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
641- 673) Of Human Zinc Finger Protein 473
Length = 46
Score = 30.4 bits (67), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 206 REKRFQCSECHKKFMRSDHLQKHIKTHS 233
+E F+C+EC K F S HL KH H+
Sbjct: 9 KEHPFKCNECGKTFSHSAHLSKHQLIHA 36
>pdb|2EM3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
640- 672) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 30.4 bits (67), Expect = 1.6, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C C K F + HL +H KTH+
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTHT 36
Score = 28.1 bits (61), Expect = 7.0, Method: Composition-based stats.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C+K + + +HL H + HTGE+P
Sbjct: 18 CSKAFTQKAHLAQHQKTHTGEKP 40
>pdb|2YU8|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
648- 680) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 19/27 (70%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C+EC K F ++ HL +H + H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVHT 36
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C KV+ + SHL H R HTG +P
Sbjct: 18 CGKVFTQNSHLARHRRVHTGGKP 40
>pdb|2YTQ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
775- 807) Of Human Zinc Finger Protein 268
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + CSEC K F +L H++THS
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + S+L H+R H+GE+P
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGEKP 40
>pdb|2YTR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
760- 792) Of Human Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + +TS L H R HTGE+P
Sbjct: 18 CGKAFSQTSKLARHQRIHTGEKP 40
>pdb|2EN3|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
796- 828) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKT 235
EK FQC EC F S L KH+++H +T
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERT 38
>pdb|2EQ2|A Chain A, Solution Structure Of The 16th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 347
Length = 46
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + +TS L H R HTGE+P
Sbjct: 18 CGKAFSQTSKLARHQRVHTGEKP 40
>pdb|2LCE|A Chain A, Chemical Shift Assignment Of Hr4436b From Homo Sapiens,
Northeast Structural Genomics Consortium
Length = 74
Score = 29.6 bits (65), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 14/44 (31%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVN 186
C + +L +H HTGE+P+ C CG +F R L+ +
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCN--ICGAQFNRPANLKTH 64
>pdb|2EOO|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
425- 457) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 20/32 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTRCT 238
E+ + C+EC K F R HL +H+K H + + +
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHFREKSS 41
>pdb|2EOE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
508- 540) Of Human Zinc Finger Protein 347
Length = 46
Score = 29.3 bits (64), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
EK ++C+EC K F ++ HL H + H+ +
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIHTGVK 39
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C KV+ + SHL H R HTG +P
Sbjct: 18 CGKVFTQNSHLANHQRIHTGVKP 40
>pdb|2EN6|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
887- 919) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + + S L AH R HTGE+P
Sbjct: 18 CGKTFSQKSILSAHQRTHTGEKP 40
>pdb|2YTG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
369- 401) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K Y + HL H R HTGE+P
Sbjct: 18 CGKSYNQRVHLTQHQRVHTGEKP 40
>pdb|2YSV|A Chain A, Solution Structure Of C2h2 Type Zinc Finger Domain 17 In
Zinc Finger Protein 473
Length = 42
Score = 29.3 bits (64), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 19/26 (73%), Gaps = 2/26 (7%)
Query: 161 TGERPFVCTWQFCGKRFTRSDELQVN 186
+GE+P+VC Q CGK FT+S L ++
Sbjct: 6 SGEKPYVC--QECGKAFTQSSCLSIH 29
>pdb|2EM5|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
768- 800) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 18/32 (56%), Gaps = 2/32 (6%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERP 165
K H CH C + + SHL H R HTGE+P
Sbjct: 11 KSHQCHE--CGRGFTLKSHLNQHQRIHTGEKP 40
>pdb|2YTF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
607- 639) Of Human Zinc Finger Protein 268
Length = 46
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK F+CSEC K F +L H +TH+
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTHT 36
Score = 28.1 bits (61), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + S+L H R HTGE+P
Sbjct: 18 CQKAFNTKSNLIVHQRTHTGEKP 40
>pdb|2YTS|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
715- 747) Of Human Zinc Finger Protein 484
Length = 46
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + C+EC K F++ HL +H + H+
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIHT 36
Score = 29.3 bits (64), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERP 165
+K +IC C K + + SHL H R HTGE+P
Sbjct: 10 EKPYIC--NECGKSFIQKSHLNRHRRIHTGEKP 40
>pdb|2EN9|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
415- 447) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + ++S L H R HTGE+P
Sbjct: 18 CKKTFTQSSSLTVHQRIHTGEKP 40
>pdb|2LT7|A Chain A, Solution Nmr Structure Of Kaiso Zinc Finger Dna Binding
Domain In Complex With Kaiso Binding Site Dna
pdb|4F6M|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Domain
In Complex With Kaiso Binding Site Dna
pdb|4F6N|A Chain A, Crystal Structure Of Kaiso Zinc Finger Dna Binding Protein
In Complex With Methylated Cpg Site Dna
Length = 133
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 43/102 (42%), Gaps = 18/102 (17%)
Query: 130 ADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGR 189
D + +IC + C + Y + LR H H+ E+ + C ++C K F L +
Sbjct: 17 VDGRVYYICIV--CKRSYVCLTSLRRHFNIHSWEKKYPC--RYCEKVFP----LAEYRTK 68
Query: 190 FGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKT 231
I T E+R+QC C K F+ + HIK+
Sbjct: 69 HEIHHTG----------ERRYQCLACGKSFINYQFMSSHIKS 100
>pdb|2EN1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
563- 595) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.9 bits (63), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 141 EGCNKVYGKTSHLRAHLRWHTGERP 165
E C K + + S L +H R HTGE+P
Sbjct: 16 EECGKRFTQNSQLHSHQRVHTGEKP 40
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK F+C EC K+F ++ L H + H+
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVHT 36
>pdb|2EME|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
725- 757) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.9 bits (63), Expect = 3.8, Method: Composition-based stats.
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 2/33 (6%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERP 165
+K ++C + C K +G ++ L H R HTGE+P
Sbjct: 10 EKPYVC--DYCGKAFGLSAELVRHQRIHTGEKP 40
>pdb|2ELS|A Chain A, Solution Structure Of The 2nd C2h2 Zinc Finger Of Human
Zinc Finger Protein 406
Length = 36
Score = 28.9 bits (63), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 141 EGCNKVYGKTSHLRAHLRWHTGER 164
E CNKV+ L+AHLR HT E+
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNEK 36
>pdb|2YTJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
771- 803) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.9 bits (63), Expect = 4.0, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
EK + C+EC K F +L KH K H+K +
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIHTKQK 39
>pdb|2EOH|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
780- 812) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTRCT 238
+K ++C EC K F++ HL +H + H+ R +
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHTGERSS 41
>pdb|2YTI|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
564- 596) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C KV+ + SHL H HTGE+P
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKP 40
Score = 28.5 bits (62), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C+EC K F ++ HL +H H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIHT 36
>pdb|1BBO|A Chain A, High-Resolution Solution Structure Of The Double Cys2His2
Zinc Finger From The Human Enhancer Binding Protein
Mbp-1
Length = 57
Score = 28.9 bits (63), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Query: 136 HICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTW 170
+IC E C K S L+ H+R HT RP+ CT+
Sbjct: 2 YIC--EECGIRXKKPSMLKKHIRTHTDVRPYHCTY 34
>pdb|2EMB|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
342- 372) Of Human Zinc Finger Protein 473
Length = 44
Score = 28.9 bits (63), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
KR++CS+C F HL +H KTH+
Sbjct: 11 KRYECSKCQATFNLRKHLIQHQKTHA 36
>pdb|2YTN|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
732- 764) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.9 bits (63), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C KV+ + SHL H HTGE+P
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKP 40
>pdb|2EQW|A Chain A, Solution Structure Of The 6th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 484
Length = 42
Score = 28.5 bits (62), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + C+EC K F+R H H + H+
Sbjct: 8 EKPYVCTECGKAFIRKSHFITHERIHT 34
>pdb|2YTT|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
204- 236) Of Human Zinc Finger Protein 473
Length = 46
Score = 28.5 bits (62), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
K +QCSEC K F S L +H TH++ +
Sbjct: 11 KPYQCSECGKSFSGSYRLTQHWITHTREK 39
>pdb|2CT1|A Chain A, Solution Structure Of The Zinc Finger Domain Of
Transcriptional Repressor Ctcf Protein
Length = 77
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 30/73 (41%), Gaps = 14/73 (19%)
Query: 158 RWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHK 217
R H+GE+P+ C C RFT+S ++++ IL +F C C
Sbjct: 8 RTHSGEKPYEC--YICHARFTQSGTMKMH------------ILQKHTENVAKFHCPHCDT 53
Query: 218 KFMRSDHLQKHIK 230
R L H++
Sbjct: 54 VIARKSDLGVHLR 66
>pdb|2EQ0|A Chain A, Solution Structure Of The 8th C2h2 Type Zinc Finger Domain
Of Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERP 165
+K + CH C KV+ + SHL H HTGE+P
Sbjct: 10 EKPYKCHE--CGKVFRRNSHLARHQLIHTGEKP 40
Score = 28.1 bits (61), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C EC K F R+ HL +H H+
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIHT 36
>pdb|2EOG|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
693- 723) Of Human Zinc Finger Protein 268
Length = 44
Score = 28.5 bits (62), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + S+L H+R HTGE+P
Sbjct: 16 CGKAFRSKSYLIIHMRTHTGEKP 38
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K + CSEC K F +L H++TH+
Sbjct: 9 KPYGCSECGKAFRSKSYLIIHMRTHT 34
>pdb|2EOR|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
255- 287) Of Human Zinc Finger Protein 224
Length = 46
Score = 28.5 bits (62), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + C EC K F+ LQ+H + H+
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIHT 36
Score = 28.5 bits (62), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 15/25 (60%)
Query: 141 EGCNKVYGKTSHLRAHLRWHTGERP 165
E C K + S L+ H R HTGE+P
Sbjct: 16 EECGKAFIHDSQLQEHQRIHTGEKP 40
>pdb|2DLK|A Chain A, Solution Structure Of The First And The Second Zf-C2h2
Domains Of Zinc Finger Protein 692
Length = 79
Score = 28.5 bits (62), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 206 REKRFQCSE--CHKKFMRSDHLQKHIKTHSKTR 236
+K F C E C K F HL++H+K HS TR
Sbjct: 35 HQKSFSCPEPACGKSFNFKKHLKEHMKLHSDTR 67
>pdb|2YTM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
696- 728) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 13/23 (56%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K +G S H R HTG+RP
Sbjct: 18 CGKAFGDNSSCTQHQRLHTGQRP 40
>pdb|2EON|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
397- 429) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 5.5, Method: Composition-based stats.
Identities = 13/30 (43%), Positives = 16/30 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
EK ++C C K F S HL +H HS R
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHSGER 39
>pdb|2ENE|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (region
592- 624) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C KV+ S+L H R HTGE+P
Sbjct: 18 CGKVFRHNSYLSRHQRIHTGEKP 40
>pdb|2EMM|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
544- 576) Of Human Zinc Finger Protein 95 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 16/23 (69%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + +++HL H R HTGE+P
Sbjct: 18 CGKSFIQSAHLIQHQRIHTGEKP 40
>pdb|2EMJ|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
612- 644) Of Human Zinc Finger Protein 28 Homolog
Length = 46
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + +S L H R HTGE+P
Sbjct: 18 CGKSFSISSQLATHQRIHTGEKP 40
Score = 28.5 bits (62), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK F+C+EC K F S L H + H+
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIHT 36
>pdb|2ENF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
340- 372) Of Human Zinc Finger Protein 347
Length = 46
Score = 28.5 bits (62), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C KV+ + SHL H HTGE+P
Sbjct: 18 CGKVFTQNSHLVRHRGIHTGEKP 40
Score = 27.7 bits (60), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C+EC K F ++ HL +H H+
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIHT 36
>pdb|2EPS|A Chain A, Solution Structure Of The 4th Zinc Finger Domain Of Zinc
Finger Protein 278
Length = 54
Score = 28.1 bits (61), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIK 230
K + C C K F R DHL HIK
Sbjct: 11 KPYICQSCGKGFSRPDHLNGHIK 33
>pdb|2YRJ|A Chain A, Solution Structure Of The C2h2-Type Zinc Finger Domain
(781- 813) From Zinc Finger Protein 473
Length = 46
Score = 28.1 bits (61), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + + ++L H R HTGE+P
Sbjct: 18 CGKAFAQKANLTQHQRIHTGEKP 40
>pdb|4GZN|C Chain C, Mouse Zfp57 Zinc Fingers In Complex With Methylated Dna
Length = 60
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 21/44 (47%), Gaps = 4/44 (9%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVN 186
C K Y S L H R H G RP C CGK F D+ +VN
Sbjct: 10 CGKTYRDASGLSRHRRAHLGYRPRSCPE--CGKCFR--DQSEVN 49
>pdb|2EP2|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
603- 635) Of Human Zinc Finger Protein 484
Length = 46
Score = 28.1 bits (61), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 14/23 (60%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + K S L H + HTGE+P
Sbjct: 18 CGKSFTKKSQLHVHQQIHTGEKP 40
>pdb|2LVT|A Chain A, Solution Structure Of Miz-1 Zinc Finger 9
Length = 29
Score = 28.1 bits (61), Expect = 8.1, Method: Composition-based stats.
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGER 164
C C K + + S L AH+R HTGE+
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
>pdb|2EQ4|A Chain A, Solution Structure Of The 11th C2h2 Type Zinc Finger
Domain Of Zinc Finger Protein 224
Length = 46
Score = 27.7 bits (60), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + C EC K F R+ L KH + HS
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHS 36
>pdb|2EOF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
411- 441) Of Human Zinc Finger Protein 268
Length = 44
Score = 27.7 bits (60), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C+EC K F +L H +TH+
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTHT 36
>pdb|2EOX|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
315- 345) Of Human Zinc Finger Protein 473
Length = 44
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 16/25 (64%)
Query: 210 FQCSECHKKFMRSDHLQKHIKTHSK 234
+ C+EC K F R HL +H K H++
Sbjct: 13 YNCNECGKAFTRIFHLTRHQKIHTR 37
>pdb|2EP1|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
435- 467) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 13/23 (56%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + K S L H R HTGE P
Sbjct: 18 CGKSFIKKSQLHVHQRIHTGENP 40
>pdb|2EMF|A Chain A, Solution Structure Of The C2h2 Type Zinc Finger (Region
379- 411) Of Human Zinc Finger Protein 484
Length = 46
Score = 27.7 bits (60), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K F+C+EC K F R L H K H+
Sbjct: 11 KHFECTECGKAFTRKSTLSMHQKIHT 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.135 0.429
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,769,606
Number of Sequences: 62578
Number of extensions: 387036
Number of successful extensions: 1241
Number of sequences better than 100.0: 147
Number of HSP's better than 100.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 830
Number of HSP's gapped (non-prelim): 315
length of query: 339
length of database: 14,973,337
effective HSP length: 99
effective length of query: 240
effective length of database: 8,778,115
effective search space: 2106747600
effective search space used: 2106747600
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)