RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13347
(339 letters)
>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND,
transcription factor, kruppel-like factor, GC-box
promoter elements, structural genomics; NMR {Homo
sapiens}
Length = 100
Score = 149 bits (378), Expect = 2e-45
Identities = 48/110 (43%), Positives = 62/110 (56%), Gaps = 14/110 (12%)
Query: 123 FSCSLRTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDE 182
S +++++H C GC KVY K+SHL+AHLR HTGE+P+ CTW+ C RF RSDE
Sbjct: 3 SGSSGPDLEKRRIHYCDYPGCTKVYTKSSHLKAHLRTHTGEKPYKCTWEGCDWRFARSDE 62
Query: 183 LQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
L + R T K FQC C++ F RSDHL H+K H
Sbjct: 63 LTRH------YRK------HT--GAKPFQCGVCNRSFSRSDHLALHMKRH 98
Score = 33.0 bits (76), Expect = 0.031
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 206 REKRFQCS--ECHKKFMRSDHLQKHIKTHS 233
+ + C C K + +S HL+ H++TH+
Sbjct: 12 KRRIHYCDYPGCTKVYTKSSHLKAHLRTHT 41
Score = 26.0 bits (58), Expect = 7.2
Identities = 6/21 (28%), Positives = 12/21 (57%)
Query: 141 EGCNKVYGKTSHLRAHLRWHT 161
CN+ + ++ HL H++ H
Sbjct: 79 GVCNRSFSRSDHLALHMKRHQ 99
>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding,
transcription, metal-binding, DNA, protein, nucleus,
activator; 1.70A {Mus musculus} PDB: 2wbu_A
Length = 89
Score = 146 bits (370), Expect = 3e-44
Identities = 45/101 (44%), Positives = 55/101 (54%), Gaps = 14/101 (13%)
Query: 132 RKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFG 191
R H C GC K Y K+SHL+AHLR HTGE+P+ C W CG +F RSDEL +
Sbjct: 2 RTATHTCDYAGCGKTYTKSSHLKAHLRTHTGEKPYHCDWDGCGWKFARSDELTRH----- 56
Query: 192 IERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
R T + FQC +C + F RSDHL H+K H
Sbjct: 57 -YRK------HT--GHRPFQCQKCDRAFSRSDHLALHMKRH 88
Score = 38.3 bits (90), Expect = 3e-04
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 206 REKRFQCSECHKKFMRSDHLQKHIKTHS 233
+ C K + +S HL+ H++TH+
Sbjct: 4 ATHTCDYAGCGKTYTKSSHLKAHLRTHT 31
>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible
early growth response protein 1, TGFB-inducible early
growth response protein 1; NMR {Homo sapiens}
Length = 72
Score = 112 bits (281), Expect = 2e-31
Identities = 33/65 (50%), Positives = 42/65 (64%)
Query: 120 STLFSCSLRTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTR 179
S+ S + R + HIC GC K Y K+SHL+AH R HTGE+PF C+W+ C +RF R
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAHTRTHTGEKPFSCSWKGCERRFAR 61
Query: 180 SDELQ 184
SDEL
Sbjct: 62 SDELS 66
Score = 65.1 bits (159), Expect = 6e-14
Identities = 24/85 (28%), Positives = 36/85 (42%), Gaps = 16/85 (18%)
Query: 150 TSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKR 209
+S + R +C+ CGK + +S L+ + R T EK
Sbjct: 2 SSGSSGPQIDSSRIRSHICSHPGCGKTYFKSSHLKAH----------TR----THTGEKP 47
Query: 210 FQCS--ECHKKFMRSDHLQKHIKTH 232
F CS C ++F RSD L +H +TH
Sbjct: 48 FSCSWKGCERRFARSDELSRHRRTH 72
>2j7j_A Transcription factor IIIA; zinc finger module, alternative
initiation, nuclear protein, phosphorylation,
hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus
laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B
2hgh_A
Length = 85
Score = 100 bits (252), Expect = 6e-27
Identities = 22/99 (22%), Positives = 37/99 (37%), Gaps = 15/99 (15%)
Query: 135 VHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIER 194
+++CH E C K + K + L+ H HT + P+ C + C KRF+ L+ + E+
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH------EK 54
Query: 195 TVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIK-TH 232
+ C KH+ H
Sbjct: 55 V------HA--GYPCKKDDSCSFVGKTWTLYLKHVAECH 85
Score = 47.6 bits (114), Expect = 1e-07
Identities = 11/50 (22%), Positives = 16/50 (32%), Gaps = 2/50 (4%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ C EGC+K + S L+ H + H G C
Sbjct: 30 LPYECPHEGCDKRFSLPSRLKRHEKVHAGYPCKKD--DSCSFVGKTWTLY 77
>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc
finger, dimer, protein-DNA complex, cooperativity,
transcription/DNA complex; 2.35A {Mus musculus} SCOP:
g.37.1.1 g.37.1.1
Length = 73
Score = 96.6 bits (241), Expect = 1e-25
Identities = 28/85 (32%), Positives = 42/85 (49%), Gaps = 16/85 (18%)
Query: 149 KTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREK 208
++L ++ RP+ C + C +RF+RSDEL + +R +K
Sbjct: 5 PMNNLLNYVV--PKMRPYACPVESCDRRFSRSDELTRH----------IR----IHTGQK 48
Query: 209 RFQCSECHKKFMRSDHLQKHIKTHS 233
FQC C + F RSDHL HI+TH+
Sbjct: 49 PFQCRICMRNFSRSDHLTTHIRTHT 73
Score = 25.3 bits (56), Expect = 7.9
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 141 EGCNKVYGKTSHLRAHLRWHT 161
C + + ++ HL H+R HT
Sbjct: 53 RICMRNFSRSDHLTTHIRTHT 73
>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET:
DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*
Length = 119
Score = 87.2 bits (217), Expect = 2e-21
Identities = 41/104 (39%), Positives = 55/104 (52%), Gaps = 24/104 (23%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGG 188
+ +C GCNK Y K SHL+ H R HTGE+P+ C ++ C +RF+RSD+L+ G
Sbjct: 5 RPFMCAYPGCNKRYFKLSHLQMHSRKHTGEKPYQCDFKDCERRFSRSDQLKRHQRRHTG- 63
Query: 189 RFGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
K FQC C +KF RSDHL+ H +TH
Sbjct: 64 ------------------VKPFQCKTCQRKFSRSDHLKTHTRTH 89
Score = 72.2 bits (178), Expect = 5e-16
Identities = 34/97 (35%), Positives = 47/97 (48%), Gaps = 18/97 (18%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVV 197
C + C + + ++ L+ H R HTG +PF C C ++F+RSD L+ + RT
Sbjct: 39 CDFKDCERRFSRSDQLKRHQRRHTGVKPFQCK--TCQRKFSRSDHLKTH------TRT-- 88
Query: 198 RILPMTWCREKRFQCS--ECHKKFMRSDHLQKHIKTH 232
T EK F C C KKF RSD L +H H
Sbjct: 89 ----HT--GEKPFSCRWPSCQKKFARSDELVRHHNMH 119
Score = 55.2 bits (134), Expect = 7e-10
Identities = 23/74 (31%), Positives = 38/74 (51%), Gaps = 16/74 (21%)
Query: 161 TGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCS--ECHKK 218
+ +RPF+C + C KR+ + LQ++ R T EK +QC +C ++
Sbjct: 2 SEKRPFMCAYPGCNKRYFKLSHLQMH------SRK------HT--GEKPYQCDFKDCERR 47
Query: 219 FMRSDHLQKHIKTH 232
F RSD L++H + H
Sbjct: 48 FSRSDQLKRHQRRH 61
>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA
complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 155
Score = 83.4 bits (207), Expect = 1e-19
Identities = 33/102 (32%), Positives = 49/102 (48%), Gaps = 15/102 (14%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIE 193
K H C EGC K Y + +L+ HLR HTGE+P++C + C K F+ + + + R
Sbjct: 66 KPHKCTFEGCRKSYSRLENLKTHLRSHTGEKPYMCEHEGCSKAFSNASDRAKHQNR---- 121
Query: 194 RTVVRILPMTWCREKRFQC--SECHKKFMRSDHLQKHIKTHS 233
T EK + C C K++ L+KH+KT
Sbjct: 122 ---------THSNEKPYVCKLPGCTKRYTDPSSLRKHVKTVH 154
Score = 66.1 bits (162), Expect = 2e-13
Identities = 31/112 (27%), Positives = 46/112 (41%), Gaps = 30/112 (26%)
Query: 133 KKVHICHIEGCN---KVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV---- 185
+K +CH GC+ + + L H+R HTGE+P CT++ C K ++R + L+
Sbjct: 32 RKEFVCHWGGCSRELRPFKAQYMLVVHMRRHTGEKPHKCTFEGCRKSYSRLENLKTHLRS 91
Query: 186 -NGGRFGIERTVVRILPMTWCREKRFQCSE--CHKKFMRSDHLQKHIK-THS 233
G EK + C C K F + KH THS
Sbjct: 92 HTG-------------------EKPYMCEHEGCSKAFSNASDRAKHQNRTHS 124
Score = 63.8 bits (156), Expect = 1e-12
Identities = 24/108 (22%), Positives = 39/108 (36%), Gaps = 32/108 (29%)
Query: 138 CHIEGCNKVYGKTSHLRAHL---RWHTGERPFVCTWQFC---GKRFTRSDELQV-----N 186
C +GC++ + L H+ H + FVC W C + F L V
Sbjct: 4 CRWDGCSQEFDSQEQLVHHINSEHIHGERKEFVCHWGGCSRELRPFKAQYMLVVHMRRHT 63
Query: 187 GGRFGIERTVVRILPMTWCREKRFQC--SECHKKFMRSDHLQKHIKTH 232
G EK +C C K + R ++L+ H+++H
Sbjct: 64 G-------------------EKPHKCTFEGCRKSYSRLENLKTHLRSH 92
Score = 37.2 bits (87), Expect = 0.002
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
E + C ++F + L HI +
Sbjct: 1 ETDCRWDGCSQEFDSQEQLVHHINSE 26
Score = 34.9 bits (81), Expect = 0.014
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTG 162
K ++C + GC K Y S LR H++ G
Sbjct: 127 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 155
>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding
protein, transcription/DNA complex; HET: DNA; 1.60A {Mus
musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A
1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A*
1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C
Length = 90
Score = 77.5 bits (192), Expect = 3e-18
Identities = 34/95 (35%), Positives = 49/95 (51%), Gaps = 16/95 (16%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVV 197
C +E C++ + ++ L H+R HTG++PF C C + F+RSD L + RT
Sbjct: 7 CPVESCDRRFSQSGSLTRHIRIHTGQKPFQCR--ICMRNFSRSDHLTTH------IRT-- 56
Query: 198 RILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T EK F C C +KF RSD ++H K H
Sbjct: 57 ----HT--GEKPFACDICGRKFARSDERKRHTKIH 85
Score = 54.4 bits (132), Expect = 6e-10
Identities = 27/70 (38%), Positives = 37/70 (52%), Gaps = 14/70 (20%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRS 222
ERP+ C + C +RF++S L + +RI T +K FQC C + F RS
Sbjct: 2 ERPYACPVESCDRRFSQSGSLTRH----------IRI--HT--GQKPFQCRICMRNFSRS 47
Query: 223 DHLQKHIKTH 232
DHL HI+TH
Sbjct: 48 DHLTTHIRTH 57
Score = 29.4 bits (67), Expect = 0.39
Identities = 3/22 (13%), Positives = 11/22 (50%)
Query: 143 CNKVYGKTSHLRAHLRWHTGER 164
C + + ++ + H + H ++
Sbjct: 68 CGRKFARSDERKRHTKIHLRQK 89
>1tf6_A Protein (transcription factor IIIA); complex (transcription
regulation/DNA), RNA polymerase III, transcription
initiation, zinc finger protein; HET: DNA; 3.10A
{Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A
Length = 190
Score = 79.2 bits (196), Expect = 9e-18
Identities = 32/101 (31%), Positives = 41/101 (40%), Gaps = 16/101 (15%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIE 193
K +IC C Y K L+AHL HTGE+PF C + C K FT L +
Sbjct: 11 KRYICSFADCGAAYNKNWKLQAHLCKHTGEKPFPCKEEGCEKGFTSLHHLTRH------S 64
Query: 194 RTVVRILPMTWCREKRFQCSE--CHKKFMRSDHLQKHIKTH 232
T T EK F C C +F +++KH
Sbjct: 65 LT------HT--GEKNFTCDSDGCDLRFTTKANMKKHFNRF 97
Score = 70.7 bits (174), Expect = 1e-14
Identities = 24/95 (25%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVV 197
CH E C K + K + L+ H HT + P+ C + C KRF+ L+ + E+
Sbjct: 107 CHFENCGKAFKKHNQLKVHQFSHTQQLPYECPHEGCDKRFSLPSRLKRH------EKVHA 160
Query: 198 RILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
+K CS K + + +L+ + H
Sbjct: 161 GYPC-----KKDDSCSFVGKTW--TLYLKHVAECH 188
Score = 66.1 bits (162), Expect = 4e-13
Identities = 26/99 (26%), Positives = 38/99 (38%), Gaps = 18/99 (18%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIER--T 195
C EGC K + HL H HTGE+ F C C RFT ++ +
Sbjct: 45 CKEEGCEKGFTSLHHLTRHSLTHTGEKNFTCDSDGCDLRFTTKANMKKH------FNRFH 98
Query: 196 VVRILPMTWCREKRFQCS--ECHKKFMRSDHLQKHIKTH 232
++I + C C K F + + L+ H +H
Sbjct: 99 NIKICV--------YVCHFENCGKAFKKHNQLKVHQFSH 129
Score = 57.6 bits (140), Expect = 4e-10
Identities = 19/85 (22%), Positives = 29/85 (34%), Gaps = 26/85 (30%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVVRILPMTWCREKR 209
+ ++C++ CG + ++ +LQ G EK
Sbjct: 2 GEKALPVVYKRYICSFADCGAAYNKNWKLQAHLCKHTG-------------------EKP 42
Query: 210 FQCSE--CHKKFMRSDHLQKHIKTH 232
F C E C K F HL +H TH
Sbjct: 43 FPCKEEGCEKGFTSLHHLTRHSLTH 67
>1ubd_C Protein (YY1 zinc finger domain); transcription initiation,
initiator element, zinc finger protein, DNA- protein
recognition; HET: DNA; 2.50A {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*
Length = 124
Score = 74.5 bits (184), Expect = 8e-17
Identities = 39/101 (38%), Positives = 56/101 (55%), Gaps = 18/101 (17%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIE 193
+VH+C C K + ++S L+ H HTGE+PF CT++ CGKRF+ L
Sbjct: 33 RVHVC--AECGKAFVESSKLKRHQLVHTGEKPFQCTFEGCGKRFSLDFNL---------- 80
Query: 194 RTVVRILPMTWCREKRFQCS--ECHKKFMRSDHLQKHIKTH 232
RT VRI T ++ + C C+KKF +S +L+ HI TH
Sbjct: 81 RTHVRI--HT--GDRPYVCPFDGCNKKFAQSTNLKSHILTH 117
Score = 64.8 bits (159), Expect = 3e-13
Identities = 31/108 (28%), Positives = 44/108 (40%), Gaps = 29/108 (26%)
Query: 132 RKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----N 186
+ C +GC K++ S +R HL H G R VC CGK F S +L+
Sbjct: 2 EPRTIACPHKGCTKMFRDNSAMRKHLHTH-GPRVHVCAE--CGKAFVESSKLKRHQLVHT 58
Query: 187 GGRFGIERTVVRILPMTWCREKRFQCS--ECHKKFMRSDHLQKHIKTH 232
G EK FQC+ C K+F +L+ H++ H
Sbjct: 59 G-------------------EKPFQCTFEGCGKRFSLDFNLRTHVRIH 87
Score = 40.6 bits (96), Expect = 1e-04
Identities = 8/29 (27%), Positives = 18/29 (62%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGERPF 166
C +GCNK + ++++L++H+ H +
Sbjct: 95 CPFDGCNKKFAQSTNLKSHILTHAKAKNN 123
>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding
protein; NMR {Homo sapiens}
Length = 37
Score = 71.2 bits (175), Expect = 1e-16
Identities = 29/33 (87%), Positives = 31/33 (93%)
Query: 132 RKKVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
+KK HICHI+GC KVYGKTSHLRAHLRWHTGER
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHTGER 37
Score = 33.9 bits (78), Expect = 0.003
Identities = 8/30 (26%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 206 REKRFQCS--ECHKKFMRSDHLQKHIKTHS 233
++K+ C C K + ++ HL+ H++ H+
Sbjct: 5 KKKQHICHIQGCGKVYGKTSHLRAHLRWHT 34
Score = 29.6 bits (67), Expect = 0.10
Identities = 6/24 (25%), Positives = 13/24 (54%)
Query: 161 TGERPFVCTWQFCGKRFTRSDELQ 184
++ +C Q CGK + ++ L+
Sbjct: 4 GKKKQHICHIQGCGKVYGKTSHLR 27
>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double
helix, transcription/DNA complex; HET: DNA; 2.80A
{Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1
Length = 66
Score = 71.0 bits (175), Expect = 4e-16
Identities = 15/77 (19%), Positives = 24/77 (31%), Gaps = 14/77 (18%)
Query: 158 RWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHK 217
GE + C C + +T + K + C C K
Sbjct: 3 FTKEGEHTYRCK--VCSRVYTHISNFCRH----------YVTSHKR--NVKVYPCPFCFK 48
Query: 218 KFMRSDHLQKHIKTHSK 234
+F R D++ H+K K
Sbjct: 49 EFTRKDNMTAHVKIIHK 65
Score = 54.1 bits (131), Expect = 4e-10
Identities = 13/53 (24%), Positives = 22/53 (41%), Gaps = 6/53 (11%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLR--WHTGERPFVCTWQFCGKRFTRSDELQ 184
+ C + C++VY S+ H + + C + C K FTR D +
Sbjct: 9 HTYRCKV--CSRVYTHISNFCRHYVTSHKRNVKVYPCPF--CFKEFTRKDNMT 57
Score = 40.6 bits (96), Expect = 2e-05
Identities = 6/29 (20%), Positives = 12/29 (41%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKT 235
E ++C C + + + +H T K
Sbjct: 8 EHTYRCKVCSRVYTHISNFCRHYVTSHKR 36
Score = 27.5 bits (62), Expect = 1.4
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTG 162
KV+ C C K + + ++ AH++
Sbjct: 39 KVYPCPF--CFKEFTRKDNMTAHVKIIHK 65
>2ent_A Krueppel-like factor 15; zinc binding, transcription factor,
adipogenesis, CLCNKA, chloride channel Ka, rhodopsin,
IRBP; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 48
Score = 69.3 bits (170), Expect = 1e-15
Identities = 17/30 (56%), Positives = 20/30 (66%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
+ TGE+PF CTW CG RF+RSDEL
Sbjct: 2 SSGSSGTGEKPFACTWPGCGWRFSRSDELS 31
Score = 45.8 bits (109), Expect = 2e-07
Identities = 10/43 (23%), Positives = 18/43 (41%)
Query: 127 LRTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCT 169
+ +K C GC + ++ L H R H+G +P +
Sbjct: 4 GSSGTGEKPFACTWPGCGWRFSRSDELSRHRRSHSGVKPSGPS 46
>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the
cerebellum 3, disease mutation, DNA-binding,
metal-binding, nucleus, polymorphism; NMR {Homo sapiens}
Length = 155
Score = 71.9 bits (177), Expect = 1e-15
Identities = 33/111 (29%), Positives = 49/111 (44%), Gaps = 29/111 (26%)
Query: 133 KKVHICHIEGCN---KVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV---- 185
+ H+C+ E C K + L H+R HTGE+PF C + CGK F RS+ L++
Sbjct: 55 QNNHVCYWEECPREGKSFKAKYKLVNHIRVHTGEKPFPCPFPGCGKIFARSENLKIHKRT 114
Query: 186 -NGGRFGIERTVVRILPMTWCREKRFQCS--ECHKKFMRSDHLQKHIKTHS 233
G EK F+C C ++F S +KH+ H+
Sbjct: 115 HTG-------------------EKPFKCEFEGCDRRFANSSDRKKHMHVHT 146
Score = 63.5 bits (155), Expect = 2e-12
Identities = 29/128 (22%), Positives = 42/128 (32%), Gaps = 36/128 (28%)
Query: 119 ISTLFSCSLRTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPF----VCTWQFC- 173
I SC + + + C++ + L H+ P VC W+ C
Sbjct: 10 IKQELSC-KWIDEAQLSRPK--KSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECP 66
Query: 174 --GKRFTRSDELQV-----NGGRFGIERTVVRILPMTWCREKRFQCS--ECHKKFMRSDH 224
GK F +L G EK F C C K F RS++
Sbjct: 67 REGKSFKAKYKLVNHIRVHTG-------------------EKPFPCPFPGCGKIFARSEN 107
Query: 225 LQKHIKTH 232
L+ H +TH
Sbjct: 108 LKIHKRTH 115
Score = 55.8 bits (135), Expect = 9e-10
Identities = 12/91 (13%), Positives = 21/91 (23%), Gaps = 7/91 (7%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
+ + C + F+ EL + +
Sbjct: 3 SGSSGQPIKQELSCKWIDEAQLSRPKK--SCDRTFSTMHELVTHVTMEHVGGPEQNNHVC 60
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTHS 233
W +C K F L HI+ H+
Sbjct: 61 YW-----EECPREGKSFKAKYKLVNHIRVHT 86
Score = 46.5 bits (111), Expect = 1e-06
Identities = 9/36 (25%), Positives = 18/36 (50%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCT 169
K C EGC++ + +S + H+ HT ++ +
Sbjct: 119 KPFKCEFEGCDRRFANSSDRKKHMHVHTSDKSGPSS 154
>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine
zipper, X-RAY crystallography, structure-based design,
zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1
g.37.1.1 PDB: 1xf7_A
Length = 88
Score = 68.3 bits (168), Expect = 6e-15
Identities = 22/93 (23%), Positives = 38/93 (40%), Gaps = 20/93 (21%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C + + ++ HL H+R HTGE+PF C CG++F RSDE + +
Sbjct: 9 CMRNFSRSDHLTTHIRTHTGEKPFACD--ICGRKFARSDERKRH------RDI------- 53
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHI---KTH 232
+ + ++ HL+ + K
Sbjct: 54 --QHILPILEDKVEELLSKNYHLENEVARLKKL 84
Score = 40.2 bits (95), Expect = 7e-05
Identities = 15/25 (60%), Positives = 17/25 (68%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTH 232
K FQC C + F RSDHL HI+TH
Sbjct: 2 KPFQCRICMRNFSRSDHLTTHIRTH 26
Score = 27.8 bits (63), Expect = 1.4
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 143 CNKVYGKTSHLR---AHLRWHTGER 164
++ K HL A L+ GER
Sbjct: 64 VEELLSKNYHLENEVARLKKLVGER 88
>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 77
Score = 67.9 bits (167), Expect = 7e-15
Identities = 17/81 (20%), Positives = 29/81 (35%), Gaps = 14/81 (17%)
Query: 152 HLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQ 211
+ R H+GE+P+ C C RFT+S ++++ +F
Sbjct: 2 SSGSSGRTHSGEKPYECY--ICHARFTQSGTMKMH------ILQ------KHTENVAKFH 47
Query: 212 CSECHKKFMRSDHLQKHIKTH 232
C C R L H++
Sbjct: 48 CPHCDTVIARKSDLGVHLRKQ 68
Score = 49.1 bits (118), Expect = 4e-08
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 4/45 (8%)
Query: 143 CNKVYGKTSHLRAHLRWHTGE--RPFVCTWQFCGKRFTRSDELQV 185
C+ + ++ ++ H+ E F C C R +L V
Sbjct: 21 CHARFTQSGTMKMHILQKHTENVAKFHCP--HCDTVIARKSDLGV 63
Score = 36.3 bits (85), Expect = 0.001
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 3/39 (7%)
Query: 129 TADRKKVHICHIEGCNKVYGKTSHLRAHLR-WHTGERPF 166
+ C C+ V + S L HLR H+ P
Sbjct: 39 HTENVAKFHC--PHCDTVIARKSDLGVHLRKQHSYSGPS 75
>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1 g.37.1.1
Length = 95
Score = 67.9 bits (167), Expect = 1e-14
Identities = 32/92 (34%), Positives = 40/92 (43%), Gaps = 15/92 (16%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K++ HL H H+GE+P+ C CG RF R D + + VR
Sbjct: 13 CGKIFRDVYHLNRHKLSHSGEKPYSCP--VCGLRFKRKDRMSYH----------VRS--H 58
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIK-THS 233
K + C C K F R DHL HIK HS
Sbjct: 59 DGSVGKPYICQSCGKGFSRPDHLNGHIKQVHS 90
Score = 53.3 bits (129), Expect = 2e-09
Identities = 17/78 (21%), Positives = 25/78 (32%), Gaps = 26/78 (33%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVVRILPMTWCREKRFQCSE 214
+G C CGK F L +G EK + C
Sbjct: 2 SSGSSGVACE--ICGKIFRDVYHLNRHKLSHSG-------------------EKPYSCPV 40
Query: 215 CHKKFMRSDHLQKHIKTH 232
C +F R D + H+++H
Sbjct: 41 CGLRFKRKDRMSYHVRSH 58
Score = 37.5 bits (88), Expect = 7e-04
Identities = 9/27 (33%), Positives = 11/27 (40%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
C C K F HL +H +HS
Sbjct: 5 SSGVACEICGKIFRDVYHLNRHKLSHS 31
>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Mus musculus} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1
Length = 124
Score = 68.3 bits (168), Expect = 2e-14
Identities = 29/90 (32%), Positives = 43/90 (47%), Gaps = 13/90 (14%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C+K + +L+ H R HTGE+PF C CGK + R + L + R + R
Sbjct: 13 CHKKFLSKYYLKVHNRKHTGEKPFECPK--CGKCYFRKENLLEHEARNCMNR-------- 62
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
E+ F CS C + F R L+ H+ +H
Sbjct: 63 ---SEQVFTCSVCQETFRRRMELRLHMVSH 89
Score = 61.4 bits (150), Expect = 5e-12
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 30/100 (30%)
Query: 143 CNKVYGKTSHLRAHLRW---HTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIER 194
C K Y + +L H + E+ F C+ C + F R EL++ G
Sbjct: 41 CGKCYFRKENLLEHEARNCMNRSEQVFTCSV--CQETFRRRMELRLHMVSHTG------- 91
Query: 195 TVVRILPMTWCREKRFQCSECHKKFMRSDHLQKH-IKTHS 233
E ++CS C ++FM+ LQ H IK HS
Sbjct: 92 ------------EMPYKCSSCSQQFMQKKDLQSHMIKLHS 119
Score = 48.7 bits (117), Expect = 1e-07
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 16/69 (23%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKF 219
+G C C K+F L+V+ R T EK F+C +C K +
Sbjct: 2 SSGSSGVECPT--CHKKFLSKYYLKVH------NRK------HT--GEKPFECPKCGKCY 45
Query: 220 MRSDHLQKH 228
R ++L +H
Sbjct: 46 FRKENLLEH 54
Score = 39.0 bits (92), Expect = 3e-04
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
+C CHKKF+ +L+ H + H
Sbjct: 5 SSGVECPTCHKKFLSKYYLKVHNRKH 30
Score = 26.7 bits (60), Expect = 6.6
Identities = 5/23 (21%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
Query: 143 CNKVYGKTSHLRAH-LRWHTGER 164
C++ + + L++H ++ H+G
Sbjct: 100 CSQQFMQKKDLQSHMIKLHSGPS 122
>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 79
Score = 64.9 bits (159), Expect = 7e-14
Identities = 14/87 (16%), Positives = 27/87 (31%), Gaps = 15/87 (17%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLR-WHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI 192
C GC +++ +L H + H ++ F C CGK F L+ +
Sbjct: 6 SGMPCDFPGCGRIFSNRQYLNHHKKYQHIHQKSFSCPEPACGKSFNFKKHLKEH------ 59
Query: 193 ERTVVRILPMTWCREKRFQCSECHKKF 219
+ + + + C
Sbjct: 60 MKL------HS--DTRDYICEFSGPSS 78
Score = 63.0 bits (154), Expect = 5e-13
Identities = 19/76 (25%), Positives = 29/76 (38%), Gaps = 15/76 (19%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSE--CHK 217
+G C + CG+ F+ L + + +K F C E C K
Sbjct: 2 SSGSSGMPCDFPGCGRIFSNRQYLNHH----------KKY---QHIHQKSFSCPEPACGK 48
Query: 218 KFMRSDHLQKHIKTHS 233
F HL++H+K HS
Sbjct: 49 SFNFKKHLKEHMKLHS 64
>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain,
protein-DNA complex, DNA-B metal-binding, nucleus; HET:
DNA; NMR {Rattus norvegicus}
Length = 82
Score = 63.6 bits (156), Expect = 3e-13
Identities = 27/95 (28%), Positives = 41/95 (43%), Gaps = 26/95 (27%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVV 197
C K + ++S L HL H+ RP+ C Q+CGKRF + +++ G
Sbjct: 7 CGKSFKRSSTLSTHLLIHSDTRPYPC--QYCGKRFHQKSDMKKHTFIHTG---------- 54
Query: 198 RILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
EK +C C K F +S +L H + H
Sbjct: 55 ---------EKPHKCQVCGKAFSQSSNLITHSRKH 80
Score = 32.8 bits (76), Expect = 0.023
Identities = 11/24 (45%), Positives = 12/24 (50%)
Query: 210 FQCSECHKKFMRSDHLQKHIKTHS 233
F C C K F RS L H+ HS
Sbjct: 2 FDCKICGKSFKRSSTLSTHLLIHS 25
Score = 26.2 bits (59), Expect = 3.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTG 162
C K + ++S+L H R HTG
Sbjct: 63 CGKAFSQSSNLITHSRKHTG 82
>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Mus musculus} SCOP:
k.12.1.1
Length = 106
Score = 63.6 bits (156), Expect = 5e-13
Identities = 27/83 (32%), Positives = 38/83 (45%), Gaps = 16/83 (19%)
Query: 151 SHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRF 210
S ++ F+C +FCG+ FT+S L ++ ERT T E+ +
Sbjct: 3 SGSSGGRLPSKTKKEFIC--KFCGRHFTKSYNLLIH------ERT------HT--DERPY 46
Query: 211 QCSECHKKFMRSDHLQKHIKTHS 233
C CHK F R DHL+ H HS
Sbjct: 47 TCDICHKAFRRQDHLRDHRYIHS 69
Score = 63.6 bits (156), Expect = 6e-13
Identities = 29/95 (30%), Positives = 38/95 (40%), Gaps = 26/95 (27%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVV 197
C + + K+ +L H R HT ERP+ C C K F R D L+ +
Sbjct: 23 CGRHFTKSYNLLIHERTHTDERPYTCDI--CHKAFRRQDHLRDHRYIHSK---------- 70
Query: 198 RILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F+C EC K F +S L H H
Sbjct: 71 ---------EKPFKCQECGKGFCQSRTLAVHKTLH 96
Score = 37.0 bits (87), Expect = 0.001
Identities = 5/27 (18%), Positives = 8/27 (29%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + ++ L H H
Sbjct: 79 CGKGFCQSRTLAVHKTLHMQTSSPTAA 105
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex;
1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Length = 190
Score = 65.5 bits (161), Expect = 6e-13
Identities = 34/90 (37%), Positives = 49/90 (54%), Gaps = 16/90 (17%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K + + ++LRAH R HTGE+P+ C CGK F++ L+ + +RT
Sbjct: 83 CGKSFSQRANLRAHQRTHTGEKPYACPE--CGKSFSQLAHLRAH------QRT------H 128
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T EK ++C EC K F R D+L H +TH
Sbjct: 129 T--GEKPYKCPECGKSFSREDNLHTHQRTH 156
Score = 64.0 bits (157), Expect = 2e-12
Identities = 29/95 (30%), Positives = 42/95 (44%), Gaps = 26/95 (27%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVV 197
C K + ++ HL H R HTGE+P+ C CGK F+ +L G
Sbjct: 27 CGKSFSRSDHLAEHQRTHTGEKPYKCPE--CGKSFSDKKDLTRHQRTHTG---------- 74
Query: 198 RILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K F + +L+ H +TH
Sbjct: 75 ---------EKPYKCPECGKSFSQRANLRAHQRTH 100
Score = 63.6 bits (156), Expect = 3e-12
Identities = 35/95 (36%), Positives = 44/95 (46%), Gaps = 26/95 (27%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVV 197
C K + + +HLRAH R HTGE+P+ C CGK F+R D L G
Sbjct: 111 CGKSFSQLAHLRAHQRTHTGEKPYKCPE--CGKSFSREDNLHTHQRTHTG---------- 158
Query: 198 RILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K F R D L H +TH
Sbjct: 159 ---------EKPYKCPECGKSFSRRDALNVHQRTH 184
Score = 63.2 bits (155), Expect = 3e-12
Identities = 31/90 (34%), Positives = 43/90 (47%), Gaps = 16/90 (17%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K + L H R HTGE+P+ C CGK F++ L+ + +RT
Sbjct: 55 CGKSFSDKKDLTRHQRTHTGEKPYKCPE--CGKSFSQRANLRAH------QRT------H 100
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
T EK + C EC K F + HL+ H +TH
Sbjct: 101 T--GEKPYACPECGKSFSQLAHLRAHQRTH 128
Score = 60.1 bits (147), Expect = 5e-11
Identities = 28/82 (34%), Positives = 37/82 (45%), Gaps = 16/82 (19%)
Query: 151 SHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRF 210
S A GE+P+ C CGK F+RSD L + +RT T EK +
Sbjct: 7 SSSVAQAALEPGEKPYACPE--CGKSFSRSDHLAEH------QRT------HT--GEKPY 50
Query: 211 QCSECHKKFMRSDHLQKHIKTH 232
+C EC K F L +H +TH
Sbjct: 51 KCPECGKSFSDKKDLTRHQRTH 72
Score = 32.8 bits (76), Expect = 0.084
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C K + + L H R HTG++
Sbjct: 167 CGKSFSRRDALNVHQRTHTGKKT 189
>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein,
DNA- binding, transcription, C2H2-type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1 g.37.1.1
Length = 96
Score = 62.4 bits (153), Expect = 1e-12
Identities = 21/95 (22%), Positives = 34/95 (35%), Gaps = 26/95 (27%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVV 197
C K + + L+ H+R HTG +P+ C + C S L +
Sbjct: 14 CGKCFSRKDKLKTHMRCHTGVKPYKC--KTCDYAAADSSSLNKHLRIHSD---------- 61
Query: 198 RILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
E+ F+C C S L H+++H
Sbjct: 62 ---------ERPFKCQICPYASRNSSQLTVHLRSH 87
Score = 50.9 bits (123), Expect = 1e-08
Identities = 19/79 (24%), Positives = 27/79 (34%), Gaps = 26/79 (32%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVVRILPMTWCREKRFQCSE 214
P C + CGK F+R D+L+ G K ++C
Sbjct: 3 SGSSGPHKC--EVCGKCFSRKDKLKTHMRCHTG-------------------VKPYKCKT 41
Query: 215 CHKKFMRSDHLQKHIKTHS 233
C S L KH++ HS
Sbjct: 42 CDYAAADSSSLNKHLRIHS 60
Score = 38.2 bits (90), Expect = 4e-04
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C +S L HLR HTG+
Sbjct: 70 CPYASRNSSQLTVHLRSHTGDSGPSS 95
>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 86
Score = 61.0 bits (149), Expect = 2e-12
Identities = 19/81 (23%), Positives = 31/81 (38%), Gaps = 12/81 (14%)
Query: 152 HLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQ 211
+ R HTGE+P+ C+ C K F + L ++ + F
Sbjct: 2 SSGSSGRTHTGEKPYACSH--CDKTFRQKQLLDMH----------FKRYHDPNFVPAAFV 49
Query: 212 CSECHKKFMRSDHLQKHIKTH 232
CS+C K F R + + +H
Sbjct: 50 CSKCGKTFTRRNTMARHADNC 70
Score = 46.0 bits (110), Expect = 6e-07
Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 20/81 (24%)
Query: 143 CNKVYGKTSHLRAHLRWHTGE----RPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVR 198
C+K + + L H + + FVC+ CGK FTR + + +
Sbjct: 21 CDKTFRQKQLLDMHFKRYHDPNFVPAAFVCSK--CGKTFTRRNTMARH------ADN--- 69
Query: 199 ILPMTWCREKRFQCSECHKKF 219
+
Sbjct: 70 ---CA--GPDGVEGENSGPSS 85
>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB
domain containing protein 22B, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 110
Score = 60.5 bits (148), Expect = 6e-12
Identities = 24/92 (26%), Positives = 38/92 (41%), Gaps = 16/92 (17%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K + S H+ H G RP+ C CGK+F L + +
Sbjct: 15 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVGH------MKI------H 60
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTHSK 234
T K ++C+ C K+FM D +H+ + +K
Sbjct: 61 T--GIKPYECNICAKRFMWRDSFHRHVTSCTK 90
Score = 53.6 bits (130), Expect = 2e-09
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 18/83 (21%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPM 202
C K + HL H++ HTG +P+ C C KRF D
Sbjct: 43 CGKKFKMKHHLVGHMKIHTGIKPYECNI--CAKRFMWRDSF--------HRHV------T 86
Query: 203 TWCREKRFQCSECHKKFMRSDHL 225
+ K ++ ++ + +
Sbjct: 87 S--CTKSYEAAKAEQNTTEASGP 107
Score = 51.3 bits (124), Expect = 1e-08
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 27/81 (33%)
Query: 158 RWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVVRILPMTWCREKRFQC 212
+G++ + C CGK FT + G + + C
Sbjct: 3 SGSSGDKLYPCQ---CGKSFTHKSQRDRHMSMHLG-------------------LRPYGC 40
Query: 213 SECHKKFMRSDHLQKHIKTHS 233
C KKF HL H+K H+
Sbjct: 41 GVCGKKFKMKHHLVGHMKIHT 61
>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN
domain containing protein 16, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Length = 77
Score = 59.4 bits (145), Expect = 8e-12
Identities = 21/90 (23%), Positives = 30/90 (33%), Gaps = 26/90 (28%)
Query: 148 GKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVVRILPM 202
G + R + C CGK F+ S +L G
Sbjct: 1 GSSGSSGRSEWQQRERRRYKCDE--CGKSFSHSSDLSKHRRTHTG--------------- 43
Query: 203 TWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K F++ HL H + H
Sbjct: 44 ----EKPYKCDECGKAFIQRSHLIGHHRVH 69
Score = 44.7 bits (107), Expect = 1e-06
Identities = 17/41 (41%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
C K + +S L H R HTGE+P+ C CGK F + L
Sbjct: 24 CGKSFSHSSDLSKHRRTHTGEKPYKC--DECGKAFIQRSHL 62
Score = 34.0 bits (79), Expect = 0.007
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPF 166
C K + + SHL H R HTG P
Sbjct: 52 CGKAFIQRSHLIGHHRVHTGSGPS 75
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Length = 29
Score = 57.6 bits (139), Expect = 1e-11
Identities = 15/28 (53%), Positives = 18/28 (64%)
Query: 209 RFQCSECHKKFMRSDHLQKHIKTHSKTR 236
+F C EC K+FMRSDHL HI H +
Sbjct: 2 KFACPECPKRFMRSDHLTLHILLHENKK 29
>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast
structural genomics consortiu PSI-biology, protein
structure initiative; NMR {Homo sapiens}
Length = 74
Score = 58.6 bits (143), Expect = 1e-11
Identities = 17/87 (19%), Positives = 27/87 (31%), Gaps = 26/87 (29%)
Query: 151 SHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTVVRILPMTWC 205
H H ++P+ C C F L G
Sbjct: 3 HHHHHHSHMTHSDKPYKC--DRCQASFRYKGNLASHKTVHTG------------------ 42
Query: 206 REKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+ C +F R +L+ H + H
Sbjct: 43 -EKPYRCNICGAQFNRPANLKTHTRIH 68
Score = 46.3 bits (111), Expect = 3e-07
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
C + +L +H HTGE+P+ C CG +F R L+
Sbjct: 23 CQASFRYKGNLASHKTVHTGEKPYRCNI--CGAQFNRPANLKT 63
Score = 35.1 bits (82), Expect = 0.003
Identities = 8/24 (33%), Positives = 16/24 (66%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPF 166
C + + ++L+ H R H+GE+P+
Sbjct: 51 CGAQFNRPANLKTHTRIHSGEKPY 74
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human
papillomavirus, HPV E6 protein, de novo protein; NMR
{Synthetic} SCOP: k.12.1.1
Length = 33
Score = 57.2 bits (138), Expect = 2e-11
Identities = 16/28 (57%), Positives = 18/28 (64%)
Query: 209 RFQCSECHKKFMRSDHLQKHIKTHSKTR 236
+F C EC K+FMRSDHL KHI H
Sbjct: 2 KFACPECPKRFMRSDHLSKHITLHELLG 29
>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces
cerevisiae} SCOP: g.37.1.1 g.37.1.1
Length = 60
Score = 56.0 bits (136), Expect = 9e-11
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
C + + + HL+ H R HT E+P+ C C + FTR D L
Sbjct: 8 CTRAFARQEHLKRHYRSHTNEKPYPCG--LCNRAFTRRDLLI 47
Score = 36.7 bits (86), Expect = 5e-04
Identities = 9/25 (36%), Positives = 16/25 (64%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTH 232
+ F C C + F R +HL++H ++H
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSH 25
Score = 25.5 bits (57), Expect = 5.5
Identities = 6/22 (27%), Positives = 11/22 (50%), Gaps = 1/22 (4%)
Query: 143 CNKVYGKTSHLRAHL-RWHTGE 163
CN+ + + L H + H+G
Sbjct: 36 CNRAFTRRDLLIRHAQKIHSGN 57
>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 78
Score = 56.3 bits (136), Expect = 9e-11
Identities = 14/74 (18%), Positives = 20/74 (27%), Gaps = 15/74 (20%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCR-EKRFQCSECHKK 218
+G C CG + L + R RF C C K+
Sbjct: 2 SSGSSGLQCE--ICGFTCRQKASLNWH----------QRK--HAETVAALRFPCEFCGKR 47
Query: 219 FMRSDHLQKHIKTH 232
F + D + H
Sbjct: 48 FEKPDSVAAHRSKS 61
Score = 48.2 bits (115), Expect = 9e-08
Identities = 16/53 (30%), Positives = 20/53 (37%), Gaps = 7/53 (13%)
Query: 136 HICHIEGCNKVYGKTSHLRAHLRWHT---GERPFVCTWQFCGKRFTRSDELQV 185
C I C + + L H R H F C FCGKRF + D +
Sbjct: 8 LQCEI--CGFTCRQKASLNWHQRKHAETVAALRFPCE--FCGKRFEKPDSVAA 56
Score = 38.5 bits (90), Expect = 2e-04
Identities = 7/30 (23%), Positives = 11/30 (36%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
QC C + L H + H++T
Sbjct: 5 SSGLQCEICGFTCRQKASLNWHQRKHAETV 34
Score = 25.8 bits (57), Expect = 5.6
Identities = 5/26 (19%), Positives = 7/26 (26%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + K + AH
Sbjct: 44 CGKRFEKPDSVAAHRSKSHPALLLAP 69
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger,
transcription factor, DNA binding protein; NMR {Mus
musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Length = 37
Score = 55.0 bits (133), Expect = 1e-10
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
K FQC +C + F RSDHL H K H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 72
Score = 53.2 bits (129), Expect = 1e-09
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 22/84 (26%)
Query: 153 LRAHLRWHTGERPFVCTWQFCGKRFTRSDEL---QVNGGRFGIERTVVRILPMTWCREKR 209
H+GE+P+ C CGK F+RS L Q R+ T EK
Sbjct: 2 SSGSSGIHSGEKPYGCVE--CGKAFSRSSILVQHQ-------------RV--HT--GEKP 42
Query: 210 FQCSECHKKFMRSDHLQKHIKTHS 233
++C EC K F ++ L H + H+
Sbjct: 43 YKCLECGKAFSQNSGLINHQRIHT 66
Score = 46.3 bits (111), Expect = 3e-07
Identities = 17/41 (41%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
C K + ++S L H R HTGE+P+ C CGK F+++ L
Sbjct: 20 CGKAFSRSSILVQHQRVHTGEKPYKCLE--CGKAFSQNSGL 58
Score = 34.4 bits (80), Expect = 0.005
Identities = 8/24 (33%), Positives = 10/24 (41%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPF 166
C K + + S L H R HT
Sbjct: 48 CGKAFSQNSGLINHQRIHTSGPSS 71
>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 73
Score = 52.7 bits (126), Expect = 1e-09
Identities = 18/86 (20%), Positives = 24/86 (27%), Gaps = 23/86 (26%)
Query: 148 GKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCRE 207
G + + H G+R C+ CG F R L R
Sbjct: 1 GSSGSSGKRQKIHLGDRSQKCS--KCGIIFIRRSTL---------------------SRR 37
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K C +C K + L K S
Sbjct: 38 KTPMCEKCRKDSCQEAALNKDEGNES 63
Score = 26.5 bits (58), Expect = 3.1
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 132 RKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPF 166
R+K +C E C K + + L +G++
Sbjct: 36 RRKTPMC--EKCRKDSCQEAALNKDEGNESGKKTS 68
>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens}
SCOP: g.37.1.1 PDB: 1va2_A
Length = 31
Score = 50.3 bits (121), Expect = 4e-09
Identities = 18/21 (85%), Positives = 20/21 (95%)
Query: 164 RPFVCTWQFCGKRFTRSDELQ 184
RPF+CTW +CGKRFTRSDELQ
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQ 21
Score = 39.5 bits (93), Expect = 3e-05
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 208 KRFQCS--ECHKKFMRSDHLQKHIKTHS 233
+ F C+ C K+F RSD LQ+H +TH+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
Score = 33.7 bits (78), Expect = 0.004
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
+ +C C K + ++ L+ H R HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA
binding, transcription, C2H2 type zinc finger,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 70
Score = 50.6 bits (122), Expect = 9e-09
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 16/75 (21%)
Query: 158 RWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHK 217
+ P C+ C + L+++ ER C ++ F+C+ C
Sbjct: 2 SSGSSGHPEKCS--ECSYSCSSKAALRIH------ERI--------HCTDRPFKCNYCSF 45
Query: 218 KFMRSDHLQKHIKTH 232
+ +L KH+K
Sbjct: 46 DTKQPSNLSKHMKKF 60
Score = 45.6 bits (109), Expect = 4e-07
Identities = 12/42 (28%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
C+ + LR H R H +RPF C + C + L
Sbjct: 15 CSYSCSSKAALRIHERIHCTDRPFKCNY--CSFDTKQPSNLS 54
Score = 29.8 bits (68), Expect = 0.19
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 143 CNKVYGKTSHLRAHLRWHTGE 163
C+ + S+L H++ G+
Sbjct: 43 CSFDTKQPSNLSKHMKKFHGD 63
>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}
Length = 32
Score = 46.2 bits (109), Expect = 1e-07
Identities = 15/22 (68%), Positives = 16/22 (72%)
Query: 210 FQCSECHKKFMRSDHLQKHIKT 231
F C C K+FMRSD L KHIKT
Sbjct: 3 FACPACPKRFMRSDALSKHIKT 24
>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 54
Score = 44.9 bits (107), Expect = 5e-07
Identities = 12/37 (32%), Positives = 17/37 (45%), Gaps = 3/37 (8%)
Query: 143 CNKVYGKTSHLRAHLRW-HTGERPFVCTWQFCGKRFT 178
C K + + HL H++ HT ERP C Q +
Sbjct: 18 CGKGFSRPDHLNGHIKQVHTSERPHKC--QVWVSGPS 52
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 19/62 (30%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDELQVNGGRF--GIERTVVRILPMTWCREKRFQCSECHK 217
+ +P++C Q CGK F+R D L + + E+ +C
Sbjct: 7 GSVGKPYIC--QSCGKGFSRPDHLNGHIKQVHTS---------------ERPHKCQVWVS 49
Query: 218 KF 219
Sbjct: 50 GP 51
Score = 37.9 bits (89), Expect = 1e-04
Identities = 13/29 (44%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 206 REKRFQCSECHKKFMRSDHLQKHIK-THS 233
K + C C K F R DHL HIK H+
Sbjct: 9 VGKPYICQSCGKGFSRPDHLNGHIKQVHT 37
>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 95
Score = 46.1 bits (109), Expect = 6e-07
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 5/43 (11%)
Query: 131 DRKKVHICHIEGCNKVYGKT----SHLRAHLRWHTGERPFVCT 169
+ H+C+ E C + GK+ L H+R HTGE+ +
Sbjct: 53 PEQNNHVCYWEECPR-EGKSFKAKYKLVNHIRVHTGEKSGPSS 94
Score = 39.2 bits (91), Expect = 2e-04
Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 8/77 (10%)
Query: 158 RW-HTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECH 216
+W + + C + F+ EL + + V +C
Sbjct: 17 KWIDEAQLS--RPKKSCDRTFSTMHELVTH-----VTMEHVGGPEQNNHVCYWEECPREG 69
Query: 217 KKFMRSDHLQKHIKTHS 233
K F L HI+ H+
Sbjct: 70 KSFKAKYKLVNHIRVHT 86
Score = 37.6 bits (87), Expect = 7e-04
Identities = 13/55 (23%), Positives = 20/55 (36%), Gaps = 7/55 (12%)
Query: 138 CHIEGCNKVYGKTSHLRAHL-RWHTGERP---FVCTWQFC---GKRFTRSDELQV 185
+ C++ + L H+ H G VC W+ C GK F +L
Sbjct: 26 RPKKSCDRTFSTMHELVTHVTMEHVGGPEQNNHVCYWEECPREGKSFKAKYKLVN 80
>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 48
Score = 43.8 bits (103), Expect = 1e-06
Identities = 12/41 (29%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
Query: 128 RTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVC 168
+ +K C I C K++ HL H H+GE+P+
Sbjct: 5 SSGRTRKQVACEI--CGKIFRDVYHLNRHKLSHSGEKPYSS 43
Score = 35.3 bits (81), Expect = 0.001
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 200 LPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
+ K+ C C K F HL +H +HS +
Sbjct: 3 SGSSGRTRKQVACEICGKIFRDVYHLNRHKLSHSGEK 39
>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 42.5 bits (101), Expect = 4e-06
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K +G+ SHL HL+ H E+ +
Sbjct: 18 CGKNFGRHSHLIEHLKRHFREKSSGPS 44
Score = 39.8 bits (94), Expect = 3e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
E+ + C+EC K F R HL +H+K H
Sbjct: 10 ERPYGCNECGKNFGRHSHLIEHLKRHF 36
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
+GERP+ C CGK F R L
Sbjct: 3 SGSSGSGERPYGCNE--CGKNFGRHSHLI 29
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A
1are_A
Length = 29
Score = 41.9 bits (99), Expect = 4e-06
Identities = 9/29 (31%), Positives = 18/29 (62%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
+ F C C + F R +HL++H ++H+ +
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHTNEK 29
Score = 33.4 bits (77), Expect = 0.005
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
+ +C + C + + + HL+ H R HT E+
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 26.9 bits (60), Expect = 0.83
Identities = 8/21 (38%), Positives = 11/21 (52%), Gaps = 2/21 (9%)
Query: 164 RPFVCTWQFCGKRFTRSDELQ 184
R FVC C + F R + L+
Sbjct: 1 RSFVCE--VCTRAFARQEHLK 19
>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 115
Score = 44.0 bits (103), Expect = 6e-06
Identities = 15/103 (14%), Positives = 26/103 (25%), Gaps = 23/103 (22%)
Query: 151 SHLRAHLRWHTGERPFVCTWQFCGKRFTRSDEL--------------------QVNGGRF 190
S + + TG F C C + EL
Sbjct: 5 SSGKLYGSIFTGASKFRCKD--CSAAYDTLVELTVHMNETGHYRDDNHETDNNNPKRWSK 62
Query: 191 GIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHS 233
+R+++ + +K +C C F L H+
Sbjct: 63 PRKRSLLE-MEGKEDAQKVLKCMYCGHSFESLQDLSVHMIKTK 104
Score = 30.1 bits (67), Expect = 0.41
Identities = 6/35 (17%), Positives = 12/35 (34%), Gaps = 2/35 (5%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKT--HSKTRCTS 239
+F+C +C + L H+ H +
Sbjct: 17 ASKFRCKDCSAAYDTLVELTVHMNETGHYRDDNHE 51
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 40.2 bits (95), Expect = 3e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K +G+ SHL HLR H+ E+ +
Sbjct: 18 CGKGFGRRSHLAGHLRLHSREKSSGPS 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 13/27 (48%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
E+ F+C+EC K F R HL H++ HS
Sbjct: 10 ERPFKCNECGKGFGRRSHLAGHLRLHS 36
Score = 33.7 bits (78), Expect = 0.005
Identities = 12/30 (40%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+GERPF C CGK F R L
Sbjct: 3 SGSSGSGERPFKCNE--CGKGFGRRSHLAG 30
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 4e-05
Identities = 11/26 (42%), Positives = 13/26 (50%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + + HL H R HTGER
Sbjct: 18 CRKTFIQIGHLNQHKRVHTGERSSGP 43
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
+K ++C EC K F++ HL +H + H+
Sbjct: 10 KKPYECKECRKTFIQIGHLNQHKRVHT 36
Score = 32.1 bits (74), Expect = 0.018
Identities = 7/29 (24%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ +G++P+ C + C K F + L
Sbjct: 2 SSGSSGSGKKPYEC--KECRKTFIQIGHL 28
>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 39.4 bits (93), Expect = 4e-05
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C C +F++ HL+ H+ H
Sbjct: 9 EKPYKCETCGARFVQVAHLRAHVLIH 34
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/24 (41%), Positives = 14/24 (58%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPF 166
C + + +HLRAH+ HTG P
Sbjct: 17 CGARFVQVAHLRAHVLIHTGSGPS 40
Score = 36.0 bits (84), Expect = 6e-04
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
GE+P+ C + CG RF + L+
Sbjct: 2 SSGSSGGEKPYKC--ETCGARFVQVAHLR 28
>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.5 bits (93), Expect = 4e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + SHL +H R HTGE+P +
Sbjct: 18 CGKRFTQNSHLHSHQRVHTGEKPSGPS 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK FQC EC K+F ++ HL H + H
Sbjct: 10 EKPFQCEECGKRFTQNSHLHSHQRVH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+GE+PF C + CGKRFT++ L
Sbjct: 3 SGSSGSGEKPFQC--EECGKRFTQNSHLHS 30
>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.4 bits (93), Expect = 5e-05
Identities = 12/27 (44%), Positives = 18/27 (66%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + ++SHL+ H R HTGE+P +
Sbjct: 18 CGKEFSQSSHLQTHQRVHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 6e-04
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C C K+F +S HLQ H + H
Sbjct: 10 EKCYKCDVCGKEFSQSSHLQTHQRVH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
GE+ + C CGK F++S LQ
Sbjct: 3 SGSSGMGEKCYKC--DVCGKEFSQSSHLQT 30
>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid
binding, KIAA1227 protein, structural genomics; NMR
{Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1
Length = 107
Score = 41.0 bits (95), Expect = 5e-05
Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 21/118 (17%)
Query: 128 RTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNG 187
+ K+V+ C + CN +H R VC +C RF + Q +
Sbjct: 9 SPVENKEVYQCRL--CNAKLSSLLEQGSHERLC--RNAAVC--PYCSLRFFSPELKQEHE 62
Query: 188 GRFGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTRCTSLVMNFS 245
+ C K+ C EC + F S + +H + S
Sbjct: 63 SK---------------CEYKKLTCLECMRTFKSSFSIWRHQVEVHNQNNMAPTSGPS 105
>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 5e-05
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ + SHL H R HTG +P +
Sbjct: 18 CGKVFTQNSHLARHRRVHTGGKPSGPS 44
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F ++ HL +H + H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRRVH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C CGK FT++ L
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLAR 30
>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 5e-05
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + SHL H R HTGE+P +
Sbjct: 18 CGKSFIQKSHLNRHRRIHTGEKPSGPS 44
Score = 37.9 bits (89), Expect = 1e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK + C+EC K F++ HL +H + H
Sbjct: 10 EKPYICNECGKSFIQKSHLNRHRRIH 35
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P++C CGK F + L
Sbjct: 2 SSGSSGTGEKPYICNE--CGKSFIQKSHLNR 30
>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 6e-05
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ + SHL H R HTGE+P +
Sbjct: 18 CGKVFTQNSHLTNHWRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F ++ HL H + H
Sbjct: 10 EKPYKCNECGKVFTQNSHLTNHWRIH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ +GE+P+ C CGK FT++ L
Sbjct: 2 SSGSSGSGEKPYKC--NECGKVFTQNSHL 28
>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}
Length = 129
Score = 41.5 bits (96), Expect = 6e-05
Identities = 21/122 (17%), Positives = 39/122 (31%), Gaps = 23/122 (18%)
Query: 119 ISTLFSCSLRTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGER---PFVCTWQFCGK 175
+ L T ++K++ ++ + ++L + FVC C
Sbjct: 26 LEELKRYHQLTPEQKRLIRAIVKTLIHN-PQLLDESSYLYRLLASKAISQFVC--PLCLM 82
Query: 176 RFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHI-KTHSK 234
F+ S L + +R E C C K+F +D H+ K H+
Sbjct: 83 PFSSSVSL----------KQHIRY------TEHTKVCPVCKKEFTSTDSALDHVCKKHNI 126
Query: 235 TR 236
Sbjct: 127 CV 128
>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 7e-05
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + S L +H R HTGE+P +
Sbjct: 18 CGKRFTQNSQLHSHQRVHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F+C EC K+F ++ L H + H
Sbjct: 10 EKPFKCEECGKRFTQNSQLHSHQRVH 35
Score = 36.0 bits (84), Expect = 7e-04
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+GE+PF C + CGKRFT++ +L
Sbjct: 3 SGSSGSGEKPFKC--EECGKRFTQNSQLHS 30
>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 39.0 bits (92), Expect = 7e-05
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + +HL H R HTG RP +
Sbjct: 18 CGKAFHRHTHLNEHRRIHTGYRPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 13/26 (50%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++CSEC K F R HL +H + H
Sbjct: 10 EKPYKCSECGKAFHRHTHLNEHRRIH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/28 (35%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+GE+P+ C+ CGK F R L
Sbjct: 3 SGSSGSGEKPYKCSE--CGKAFHRHTHL 28
>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.7 bits (91), Expect = 7e-05
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ + SHL H R HTG +P +
Sbjct: 18 CGKVFTQNSHLANHQRIHTGVKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F ++ HL H + H
Sbjct: 10 EKPYKCNECGKVFTQNSHLANHQRIH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C CGK FT++ L
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHLAN 30
>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-05
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + ++HL HLR HT E +
Sbjct: 18 CGKAFVLSAHLNQHLRVHTQETLSGPS 44
Score = 36.7 bits (86), Expect = 5e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK + C+ C K F+ S HL +H++ H
Sbjct: 10 EKPYSCNVCGKAFVLSAHLNQHLRVH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/30 (36%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE+P+ C CGK F S L
Sbjct: 3 SGSSGTGEKPYSCNV--CGKAFVLSAHLNQ 30
>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-05
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + HL +HLR HTGE+P +
Sbjct: 18 CGKAFRQNIHLASHLRIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F+C EC K F ++ HL H++ H
Sbjct: 10 EKPFKCKECGKAFRQNIHLASHLRIH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/31 (32%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ +GE+PF C + CGK F ++ L
Sbjct: 2 SSGSSGSGEKPFKC--KECGKAFRQNIHLAS 30
>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.6 bits (91), Expect = 8e-05
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + +++HL H R HTGE+P +
Sbjct: 18 CGKSFIQSAHLIQHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/28 (42%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
TGERP C CGK F +S L
Sbjct: 3 SGSSGTGERPHKCNE--CGKSFIQSAHL 28
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/26 (42%), Positives = 18/26 (69%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
E+ +C+EC K F++S HL +H + H
Sbjct: 10 ERPHKCNECGKSFIQSAHLIQHQRIH 35
>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 9e-05
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + S L H + HTGER +
Sbjct: 18 CGKAFTRKSGLHIHQQSHTGERHSGPS 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE+P+ C+ CGK FTR L +
Sbjct: 3 SGSSGTGEKPYKCSD--CGKAFTRKSGLHI 30
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++CS+C K F R L H ++H
Sbjct: 10 EKPYKCSDCGKAFTRKSGLHIHQQSH 35
>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ + SHL H HTGE+P +
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 8e-04
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
+K ++C+EC K F ++ HL +H H
Sbjct: 10 KKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TG++P+ C CGK FT++ L
Sbjct: 2 SSGSSGTGKKPYKC--NECGKVFTQNSHL 28
>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + L H R HT E+P +
Sbjct: 18 CEKSFSGKLRLLVHQRMHTREKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
++CS+C K F L H + H
Sbjct: 10 VNPYKCSQCEKSFSGKLRLLVHQRMH 35
Score = 32.9 bits (76), Expect = 0.010
Identities = 8/31 (25%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ G P+ C+ C K F+ L V
Sbjct: 2 SSGSSGAGVNPYKCSQ--CEKSFSGKLRLLV 30
>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C+K + + +HL H + HTGE+P +
Sbjct: 18 CSKAFTQKAHLAQHQKTHTGEKPSGPS 44
Score = 36.4 bits (85), Expect = 5e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C C K F + HL +H KTH
Sbjct: 10 EKPYECKVCSKAFTQKAHLAQHQKTH 35
Score = 35.2 bits (82), Expect = 0.002
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C + C K FT+ L
Sbjct: 2 SSGSSGTGEKPYEC--KVCSKAFTQKAHLAQ 30
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ + SHL H HTGE+P +
Sbjct: 18 CGKVFTQNSHLARHRGIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F ++ HL +H H
Sbjct: 10 EKPYKCNECGKVFTQNSHLARHRGIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/29 (37%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TGE+P+ C CGK FT++ L
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKVFTQNSHL 28
>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 3/32 (9%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCG 174
C K + S +H R H+GE+P + G
Sbjct: 18 CGKGFYTNSQCYSHQRSHSGEKPSGPS---SG 46
Score = 37.1 bits (87), Expect = 2e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK F+C EC K F + H ++HS
Sbjct: 10 EKPFKCEECGKGFYTNSQCYSHQRSHS 36
Score = 36.0 bits (84), Expect = 8e-04
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ +GE+PF C + CGK F + +
Sbjct: 2 SSGSSGSGEKPFKC--EECGKGFYTNSQCYS 30
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2ysv_A
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + +T+HL H R HTGE+P +
Sbjct: 18 CGKAFSQTTHLIQHQRVHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K F ++ HL +H + H
Sbjct: 10 EKPYECKECGKAFSQTTHLIQHQRVH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
TGE+P+ C + CGK F+++ L
Sbjct: 3 SGSSGTGEKPYEC--KECGKAFSQTTHL 28
>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 44
Score = 38.3 bits (89), Expect = 1e-04
Identities = 11/33 (33%), Positives = 21/33 (63%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTRCTS 239
E F+CS+C + F + ++L +H +TH++ S
Sbjct: 10 ENPFKCSKCDRVFTQRNYLVQHERTHARKSGPS 42
Score = 30.2 bits (68), Expect = 0.075
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERP 165
C++V+ + ++L H R H +
Sbjct: 18 CDRVFTQRNYLVQHERTHARKSG 40
Score = 28.7 bits (64), Expect = 0.30
Identities = 9/29 (31%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ GE PF C+ C + FT+ + L
Sbjct: 2 SSGSSGAGENPFKCSK--CDRVFTQRNYL 28
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.2 bits (90), Expect = 1e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ + SHL H HTGE+P +
Sbjct: 18 CGKVFTQNSHLVRHRGIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 6e-04
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F ++ HL +H H
Sbjct: 10 EKPYKCNECGKVFTQNSHLVRHRGIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/31 (35%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C CGK FT++ L
Sbjct: 2 SSGSSGTGEKPYKC--NECGKVFTQNSHLVR 30
>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2ena_A 2en4_A
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + S L H + HTGE+P +
Sbjct: 18 CGKGFSRRSALNVHHKLHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 13/26 (50%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F+C EC K F R L H K H
Sbjct: 10 EKPFKCVECGKGFSRRSALNVHHKLH 35
Score = 36.0 bits (84), Expect = 7e-04
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+PF C CGK F+R L V
Sbjct: 2 SSGSSGTGEKPFKCVE--CGKGFSRRSALNV 30
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens}
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C+ + + S LR H H GE+P +
Sbjct: 18 CDMCFSQASSLRLHQNVHVGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC F ++ L+ H H
Sbjct: 10 EKTWKCRECDMCFSQASSLRLHQNVH 35
Score = 32.9 bits (76), Expect = 0.008
Identities = 6/31 (19%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ GE+ + C + C F+++ L++
Sbjct: 2 SSGSSGMGEKTWKC--RECDMCFSQASSLRL 30
>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 14/30 (46%), Positives = 18/30 (60%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
EK FQC EC F S L KH+++H +T
Sbjct: 10 EKPFQCKECGMNFSWSCSLFKHLRSHERTD 39
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
+ TGE+PF C + CG F+ S L
Sbjct: 2 SSGSSGTGEKPFQC--KECGMNFSWSCSLF 29
Score = 36.0 bits (84), Expect = 7e-04
Identities = 7/26 (26%), Positives = 9/26 (34%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C + + L HLR H P
Sbjct: 18 CGMNFSWSCSLFKHLRSHERTDPSGP 43
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S LR H + HTGER +
Sbjct: 18 CGKSFTWKSRLRIHQKCHTGERHSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C+ CGK FT L++
Sbjct: 2 SSGSSGTGEKPYKCSD--CGKSFTWKSRLRI 30
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++CS+C K F L+ H K H
Sbjct: 10 EKPYKCSDCGKSFTWKSRLRIHQKCH 35
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + +SHL H H+GERP +
Sbjct: 18 CGKAFRVSSHLVQHHSVHSGERPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/28 (42%), Positives = 14/28 (50%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
TGE+P+ C Q CGK F S L
Sbjct: 3 SGSSGTGEKPYKC--QVCGKAFRVSSHL 28
Score = 34.4 bits (80), Expect = 0.003
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C C K F S HL +H HS
Sbjct: 10 EKPYKCQVCGKAFRVSSHLVQHHSVHS 36
>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 38.3 bits (90), Expect = 1e-04
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K Y + HL H R HTGE+P +
Sbjct: 18 CGKSYNQRVHLTQHQRVHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 6e-04
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F+C EC K + + HL +H + H
Sbjct: 10 EKPFKCGECGKSYNQRVHLTQHQRVH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
TGE+PF C CGK + + L
Sbjct: 3 SGSSGTGEKPFKCGE--CGKSYNQRVHL 28
>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K +G ++ L H R HTGE+P +
Sbjct: 18 CGKAFGLSAELVRHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/28 (42%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+GE+P+VC +CGK F S EL
Sbjct: 3 SGSSGSGEKPYVC--DYCGKAFGLSAEL 28
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK + C C K F S L +H + H
Sbjct: 10 EKPYVCDYCGKAFGLSAELVRHQRIH 35
>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.8 bits (89), Expect = 1e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ + SHL H HTGE+P +
Sbjct: 18 CGKVFRRNSHLARHQLIHTGEKPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K F R+ HL +H H
Sbjct: 10 EKPYKCHECGKVFRRNSHLARHQLIH 35
Score = 35.1 bits (82), Expect = 0.002
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TGE+P+ C CGK F R+ L
Sbjct: 2 SSGSSGTGEKPYKCHE--CGKVFRRNSHL 28
>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 1e-04
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + L H R HTGE+P +
Sbjct: 18 CGKAFSDHIGLNQHRRIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 8e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F C +C K F L +H + H
Sbjct: 10 EKPFDCIDCGKAFSDHIGLNQHRRIH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+PF C CGK F+ L
Sbjct: 2 SSGSSGTGEKPFDCI--DCGKAFSDHIGLNQ 30
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 42
Score = 37.9 bits (89), Expect = 2e-04
Identities = 8/26 (30%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK + C C +F L+ H++ H
Sbjct: 9 EKPYPCEICGTRFRHLQTLKSHLRIH 34
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/31 (29%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
GE+P+ C + CG RF L+
Sbjct: 1 GSSGSSGGEKPYPC--EICGTRFRHLQTLKS 29
Score = 35.2 bits (82), Expect = 0.001
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPF 166
C + L++HLR HTG P
Sbjct: 17 CGTRFRHLQTLKSHLRIHTGSGPS 40
>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + S L AH R HTGE+P +
Sbjct: 18 CGKTFSQKSILSAHQRTHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK + C+EC K F + L H +TH
Sbjct: 10 EKPYGCNECGKTFSQKSILSAHQRTH 35
Score = 33.7 bits (78), Expect = 0.005
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ +GE+P+ C CGK F++ L
Sbjct: 2 SSGSSGSGEKPYGCNE--CGKTFSQKSILSA 30
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + S+L H R HTGE
Sbjct: 18 CGKAFRSKSYLIIHTRTHTGESGPSS 43
Score = 35.9 bits (84), Expect = 7e-04
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TG +P+VC CGK F L +
Sbjct: 2 SSGSSGTGMKPYVCNE--CGKAFRSKSYLII 30
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
K + C+EC K F +L H +TH
Sbjct: 10 MKPYVCNECGKAFRSKSYLIIHTRTH 35
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K +G S H R HTG+RP +
Sbjct: 18 CGKAFGDNSSCTQHQRLHTGQRPSGPS 44
Score = 34.5 bits (80), Expect = 0.002
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K F + +H + H
Sbjct: 10 EKPYKCMECGKAFGDNSSCTQHQRLH 35
Score = 34.5 bits (80), Expect = 0.003
Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TGE+P+ C CGK F +
Sbjct: 2 SSGSSGTGEKPYKCME--CGKAFGDNSSC 28
>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ + S L H + HTGE+P +
Sbjct: 18 CGKVFSRNSQLSQHQKIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 13/26 (50%), Positives = 18/26 (69%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EKR++C+EC K F R+ L +H K H
Sbjct: 10 EKRYKCNECGKVFSRNSQLSQHQKIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/28 (35%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
TGE+ + C CGK F+R+ +L
Sbjct: 3 SGSSGTGEKRYKC--NECGKVFSRNSQL 28
>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K Y + L H R HTGE+ +
Sbjct: 18 CGKGYKRRLDLDFHQRVHTGEKLSGPS 44
Score = 36.4 bits (85), Expect = 6e-04
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K + R L H + H
Sbjct: 10 EKPYKCVECGKGYKRRLDLDFHQRVH 35
Score = 36.0 bits (84), Expect = 7e-04
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ +GE+P+ C CGK + R +L
Sbjct: 2 SSGSSGSGEKPYKCVE--CGKGYKRRLDLDF 30
>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
PDB: 2eoi_A
Length = 46
Score = 37.9 bits (89), Expect = 2e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + +S L H R HTGE+P +
Sbjct: 18 CGKSFSISSQLATHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.002
Identities = 12/30 (40%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE+PF C CGK F+ S +L
Sbjct: 3 SGSSGTGEKPFEC--AECGKSFSISSQLAT 30
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F+C+EC K F S L H + H
Sbjct: 10 EKPFECAECGKSFSISSQLATHQRIH 35
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + +TS L H R HTGE+P +
Sbjct: 18 CGKAFSQTSKLARHQRVHTGEKPSGPS 44
Score = 33.3 bits (77), Expect = 0.007
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
K +QC+EC K F ++ L +H + H
Sbjct: 10 GKPYQCNECGKAFSQTSKLARHQRVH 35
Score = 32.9 bits (76), Expect = 0.008
Identities = 9/29 (31%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TG +P+ C CGK F+++ +L
Sbjct: 2 SSGSSGTGGKPYQC--NECGKAFSQTSKL 28
>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K Y +L H + HTGERP +
Sbjct: 18 CGKGYNSKFNLDMHQKVHTGERPSGPS 44
Score = 34.0 bits (79), Expect = 0.003
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C + CGK + L +
Sbjct: 2 SSGSSGTGEKPYKC--EKCGKGYNSKFNLDM 30
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C +C K + +L H K H
Sbjct: 10 EKPYKCEKCGKGYNSKFNLDMHQKVH 35
>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + K S L H + HTGE+P +
Sbjct: 18 CGKSFTKKSQLHVHQQIHTGEKPSGPS 44
Score = 36.0 bits (84), Expect = 8e-04
Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE+P+ C+ CGK FT+ +L V
Sbjct: 3 SGSSGTGEKPYECSI--CGKSFTKKSQLHV 30
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++CS C K F + L H + H
Sbjct: 10 EKPYECSICGKSFTKKSQLHVHQQIH 35
>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S+L H+R H+GE+P +
Sbjct: 18 CGKAFSSKSYLIIHMRTHSGEKPSGPS 44
Score = 36.4 bits (85), Expect = 5e-04
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + CSEC K F +L H++THS
Sbjct: 10 EKPYGCSECGKAFSSKSYLIIHMRTHS 36
Score = 34.8 bits (81), Expect = 0.002
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ GE+P+ C+ CGK F+ L +
Sbjct: 2 SSGSSGAGEKPYGCSE--CGKAFSSKSYLII 30
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + +TS L H R HTGE+P +
Sbjct: 18 CGKAFSQTSKLARHQRIHTGEKPSGPS 44
Score = 33.6 bits (78), Expect = 0.004
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F ++ L +H + H
Sbjct: 10 EKPYKCNECGKAFSQTSKLARHQRIH 35
Score = 32.9 bits (76), Expect = 0.009
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
TGE+P+ C CGK F+++ +L
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFSQTSKL 28
>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S+L H + H E+P +
Sbjct: 16 CEKAFSSKSYLLVHQQTHAEEKPSGPS 42
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK F CS C K F +L H +TH+
Sbjct: 8 EKPFGCSCCEKAFSSKSYLLVHQQTHA 34
Score = 32.5 bits (75), Expect = 0.012
Identities = 10/26 (38%), Positives = 14/26 (53%), Gaps = 2/26 (7%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDELQV 185
+GE+PF C+ C K F+ L V
Sbjct: 5 SSGEKPFGCS--CCEKAFSSKSYLLV 28
>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear
protein, phosphorylation, polymorphism, repeat,
repressor, transcription; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K Y + +L H R H GE+ +
Sbjct: 18 CGKGYNRRLNLDMHQRVHMGEKTSGPS 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ + E+P+ C + CGK + R L +
Sbjct: 2 SSGSSGSVEKPYKC--EDCGKGYNRRLNLDM 30
Score = 35.9 bits (84), Expect = 7e-04
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C +C K + R +L H + H
Sbjct: 10 EKPYKCEDCGKGYNRRLNLDMHQRVH 35
>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + ++L H R HTGE+P +
Sbjct: 18 CGKAFAQKANLTQHQRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K F + +L +H + H
Sbjct: 10 EKPYRCGECGKAFAQKANLTQHQRIH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TGE+P+ C CGK F + L
Sbjct: 2 SSGSSGTGEKPYRCGE--CGKAFAQKANL 28
>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S L+ H R HTGE+P +
Sbjct: 18 CGKAFIHDSQLQEHQRIHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK + C EC K F+ LQ+H + H
Sbjct: 10 EKPYNCEECGKAFIHDSQLQEHQRIH 35
Score = 33.7 bits (78), Expect = 0.004
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C CGK F +LQ
Sbjct: 2 SSGSSGTGEKPYNCEE--CGKAFIHDSQLQE 30
>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + S L H + HTGE+P +
Sbjct: 18 CGKAFTRKSTLSMHQKIHTGEKPSGPS 44
Score = 36.3 bits (85), Expect = 6e-04
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TG + F CT CGK FTR L +
Sbjct: 2 SSGSSGTGGKHFECTE--CGKAFTRKSTLSM 30
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
K F+C+EC K F R L H K H
Sbjct: 10 GKHFECTECGKAFTRKSTLSMHQKIH 35
>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 37.5 bits (88), Expect = 2e-04
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + S+L H R HTGE
Sbjct: 18 CQKAFNTKSNLMVHQRTHTGESGPSS 43
Score = 35.5 bits (83), Expect = 0.001
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C C K F L V
Sbjct: 2 SSGSSGTGEKPYECNE--CQKAFNTKSNLMV 30
Score = 34.4 bits (80), Expect = 0.003
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F +L H +TH
Sbjct: 10 EKPYECNECQKAFNTKSNLMVHQRTH 35
>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 45
Score = 37.1 bits (87), Expect = 2e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + +L H R HTGE+ +
Sbjct: 18 CGKSFRAKGNLVTHQRIHTGEKSGPSS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TG++PF CT CGK F L
Sbjct: 2 SSGSSGTGQKPFECTH--CGKSFRAKGNLVT 30
Score = 34.1 bits (79), Expect = 0.003
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
+K F+C+ C K F +L H + H
Sbjct: 10 QKPFECTHCGKSFRAKGNLVTHQRIH 35
>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.5 bits (88), Expect = 2e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ S+L H R HTGE+P +
Sbjct: 18 CGKVFRHNSYLSRHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/26 (38%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F + +L +H + H
Sbjct: 10 EKPYKCNECGKVFRHNSYLSRHQRIH 35
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
TGE+P+ C CGK F + L
Sbjct: 3 SGSSGTGEKPYKCNE--CGKVFRHNSYL 28
>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 37.2 bits (87), Expect = 3e-04
Identities = 7/27 (25%), Positives = 11/27 (40%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S L H R H ++ +
Sbjct: 18 CGKAFCWKSQLIMHQRTHVDDKHSGPS 44
Score = 36.4 bits (85), Expect = 6e-04
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK +C+EC K F L H +TH
Sbjct: 10 EKPCKCTECGKAFCWKSQLIMHQRTH 35
Score = 33.7 bits (78), Expect = 0.004
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P CT CGK F +L +
Sbjct: 2 SSGSSGTGEKPCKCTE--CGKAFCWKSQLIM 30
>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET:
ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB:
3znf_A 4znf_A
Length = 57
Score = 37.8 bits (87), Expect = 3e-04
Identities = 14/42 (33%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQ 184
C K S L+ H+R HT RP+ C +C F L
Sbjct: 7 CGIRXKKPSMLKKHIRTHTDVRPYHC--TYCNFSFKTKGNLT 46
Score = 32.8 bits (74), Expect = 0.015
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 14/61 (22%)
Query: 173 CGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTH 232
CG R + L+ + T + + C+ C+ F +L KH+K+
Sbjct: 7 CGIRXKKPSMLKKH--------------IRTHTDVRPYHCTYCNFSFKTKGNLTKHMKSK 52
Query: 233 S 233
+
Sbjct: 53 A 53
Score = 30.8 bits (69), Expect = 0.072
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 209 RFQCSECHKKFMRSDHLQKHIKTHSKTR 236
++ C EC + + L+KHI+TH+ R
Sbjct: 1 KYICEECGIRXKKPSMLKKHIRTHTDVR 28
Score = 27.4 bits (60), Expect = 1.2
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 127 LRTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
+RT + + C CN + +L H++ +
Sbjct: 21 IRTHTDVRPYHC--TYCNFSFKTKGNLTKHMKSKAHSK 56
>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + L H HTGE+P +
Sbjct: 18 CGKGFICRRDLYTHHMVHTGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/31 (32%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C + CGK F +L
Sbjct: 2 SSGSSGTGEKPYKC--EECGKGFICRRDLYT 30
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C EC K F+ L H H
Sbjct: 10 EKPYKCEECGKGFICRRDLYTHHMVH 35
>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + L H R H+G++P +
Sbjct: 18 CGKAFSHRQSLSVHQRIHSGKKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/30 (36%), Positives = 15/30 (50%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE+P+ C+ CGK F+ L V
Sbjct: 3 SGSSGTGEKPYECSV--CGKAFSHRQSLSV 30
Score = 32.9 bits (76), Expect = 0.008
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++CS C K F L H + HS
Sbjct: 10 EKPYECSVCGKAFSHRQSLSVHQRIHS 36
>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + S L H R H GE+P +
Sbjct: 18 CGKAFIQKSTLSMHQRIHRGEKPSGPS 44
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
E+ ++CSEC K F++ L H + H
Sbjct: 10 ERHYECSECGKAFIQKSTLSMHQRIH 35
Score = 34.4 bits (80), Expect = 0.003
Identities = 10/30 (33%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGER + C+ CGK F + L +
Sbjct: 3 SGSSGTGERHYECSE--CGKAFIQKSTLSM 30
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S L H HT E+P +
Sbjct: 18 CGKSFCGRSRLNRHSMVHTAEKPSGPS 44
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F+C C K F L +H H
Sbjct: 10 EKPFKCDICGKSFCGRSRLNRHSMVH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/31 (35%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+PF C CGK F L
Sbjct: 2 SSGSSGTGEKPFKCD--ICGKSFCGRSRLNR 30
>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + L +H R H GE+P +
Sbjct: 18 CGKAFSRKYQLISHQRTHAGEKPSGPS 44
Score = 36.3 bits (85), Expect = 5e-04
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
E ++C EC K F R L H +TH
Sbjct: 10 ENPYECHECGKAFSRKYQLISHQRTH 35
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE P+ C CGK F+R +L
Sbjct: 3 SGSSGTGENPYECHE--CGKAFSRKYQLIS 30
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/27 (40%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S L H R HTGE P +
Sbjct: 18 CGKSFSFNSQLIVHQRIHTGENPSGPS 44
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/30 (36%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE+P C + CGK F+ + +L V
Sbjct: 3 SGSSGTGEKPHEC--RECGKSFSFNSQLIV 30
Score = 32.5 bits (75), Expect = 0.013
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK +C EC K F + L H + H
Sbjct: 10 EKPHECRECGKSFSFNSQLIVHQRIH 35
>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/28 (39%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
TGER + C+ CGK F R L
Sbjct: 3 SGSSGTGERHYECSE--CGKAFARKSTL 28
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + S L H R HTGE+P +
Sbjct: 18 CGKAFARKSTLIMHQRIHTGEKPSGPS 44
Score = 35.9 bits (84), Expect = 7e-04
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
E+ ++CSEC K F R L H + H
Sbjct: 10 ERHYECSECGKAFARKSTLIMHQRIH 35
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C KV+ ++L H + HTGERP +
Sbjct: 18 CGKVFTHKTNLIIHQKIHTGERPSGPS 44
Score = 36.7 bits (86), Expect = 4e-04
Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE PF+C+ CGK FT L +
Sbjct: 2 SSGSSGTGENPFICSE--CGKVFTHKTNLII 30
Score = 35.6 bits (83), Expect = 0.001
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
E F CSEC K F +L H K H
Sbjct: 10 ENPFICSECGKVFTHKTNLIIHQKIH 35
>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S+L H HTGE+P +
Sbjct: 18 CGKAFRAHSNLTTHQVIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F +L H H
Sbjct: 10 EKPYKCNECGKAFRAHSNLTTHQVIH 35
Score = 33.3 bits (77), Expect = 0.008
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C CGK F L
Sbjct: 2 SSGSSGTGEKPYKCNE--CGKAFRAHSNLTT 30
>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S+L H R HTGE+P +
Sbjct: 18 CQKAFNTKSNLIVHQRTHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 13/26 (50%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F+CSEC K F +L H +TH
Sbjct: 10 EKPFECSECQKAFNTKSNLIVHQRTH 35
Score = 35.2 bits (82), Expect = 0.001
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+PF C+ C K F L V
Sbjct: 2 SSGSSGTGEKPFECSE--CQKAFNTKSNLIV 30
>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S L H R HTG +P +
Sbjct: 18 CAKTFSLKSQLIVHQRSHTGVKPSGPS 44
Score = 36.0 bits (84), Expect = 8e-04
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TG +P+ C+ C K F+ +L V
Sbjct: 2 SSGSSGTGVKPYGCSQ--CAKTFSLKSQLIV 30
Score = 34.4 bits (80), Expect = 0.002
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
K + CS+C K F L H ++H
Sbjct: 10 VKPYGCSQCAKTFSLKSQLIVHQRSH 35
>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/27 (40%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S L H R HTGE+P +
Sbjct: 18 CGKAFKTKSSLICHRRSHTGEKPSGPS 44
Score = 35.6 bits (83), Expect = 0.001
Identities = 10/30 (33%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TG+RP+ C CGK F L
Sbjct: 3 SGSSGTGQRPYECIE--CGKAFKTKSSLIC 30
Score = 34.1 bits (79), Expect = 0.003
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
++ ++C EC K F L H ++H
Sbjct: 10 QRPYECIECGKAFKTKSSLICHRRSH 35
>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.7 bits (86), Expect = 3e-04
Identities = 14/27 (51%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
E ++C EC K F R D L H KTHS
Sbjct: 10 ENPYECCECGKVFSRKDQLVSHQKTHS 36
Score = 34.4 bits (80), Expect = 0.002
Identities = 12/29 (41%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TGE P+ C CGK F+R D+L
Sbjct: 2 SSGSSGTGENPYECCE--CGKVFSRKDQL 28
Score = 34.0 bits (79), Expect = 0.003
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C KV+ + L +H + H+G+
Sbjct: 18 CGKVFSRKDQLVSHQKTHSGQSGPSS 43
>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 37.1 bits (87), Expect = 3e-04
Identities = 11/27 (40%), Positives = 16/27 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + ++S L H R HTGE+P +
Sbjct: 18 CKKTFTQSSSLTVHQRIHTGEKPSGPS 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
+K F+C+EC K F +S L H + H
Sbjct: 10 KKLFKCNECKKTFTQSSSLTVHQRIH 35
Score = 34.0 bits (79), Expect = 0.003
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ G++ F C C K FT+S L V
Sbjct: 2 SSGSSGAGKKLFKCNE--CKKTFTQSSSLTV 30
>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 3e-04
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK +QCSEC K F S L +H TH
Sbjct: 10 EKPYQCSECGKSFSGSYRLTQHWITH 35
Score = 36.0 bits (84), Expect = 7e-04
Identities = 8/27 (29%), Positives = 12/27 (44%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + L H HT E+P +
Sbjct: 18 CGKSFSGSYRLTQHWITHTREKPSGPS 44
Score = 32.5 bits (75), Expect = 0.011
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ GE+P+ C+ CGK F+ S L
Sbjct: 2 SSGSSGEGEKPYQCSE--CGKSFSGSYRL 28
>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 3e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S L H H+GE+P +
Sbjct: 18 CGKAFRARSSLAIHQATHSGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.005
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F L H TH
Sbjct: 10 EKPYKCNECGKAFRARSSLAIHQATH 35
Score = 32.9 bits (76), Expect = 0.008
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE+P+ C CGK F L +
Sbjct: 3 SGSSGTGEKPYKCNE--CGKAFRARSSLAI 30
>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + L H R H+GE+P +
Sbjct: 18 CGKSFSRAPCLLKHERLHSGEKPSGPS 44
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TGE+ + C + CGK F+R+ L
Sbjct: 2 SSGSSGTGEKLYNC--KECGKSFSRAPCL 28
Score = 36.0 bits (84), Expect = 8e-04
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + C EC K F R+ L KH + HS
Sbjct: 10 EKLYNCKECGKSFSRAPCLLKHERLHS 36
>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 44
Score = 36.8 bits (86), Expect = 4e-04
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
K + C+EC K F R HL +H K H+
Sbjct: 10 SKSYNCNECGKAFTRIFHLTRHQKIHT 36
Score = 34.9 bits (81), Expect = 0.002
Identities = 9/28 (32%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
T + + C CGK FTR L
Sbjct: 3 SGSSGTDSKSYNC--NECGKAFTRIFHL 28
Score = 31.0 bits (71), Expect = 0.035
Identities = 7/26 (26%), Positives = 11/26 (42%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + + HL H + HT +
Sbjct: 18 CGKAFTRIFHLTRHQKIHTRKSGPSS 43
>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/27 (33%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + L H R H+GE+P +
Sbjct: 18 CRKAFSHHASLTQHQRVHSGEKPSGPS 44
Score = 34.0 bits (79), Expect = 0.004
Identities = 9/30 (30%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE+P+ C C K F+ L
Sbjct: 3 SGSSGTGEKPYECDV--CRKAFSHHASLTQ 30
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK ++C C K F L +H + HS
Sbjct: 10 EKPYECDVCRKAFSHHASLTQHQRVHS 36
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 42
Score = 36.4 bits (85), Expect = 4e-04
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
GE+P+ C CGK F++ L V
Sbjct: 1 GSSGSSGGEKPYRCDQ--CGKAFSQKGSLIV 29
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C +C K F + L HI+ H
Sbjct: 9 EKPYRCDQCGKAFSQKGSLIVHIRVH 34
Score = 34.1 bits (79), Expect = 0.003
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPF 166
C K + + L H+R HTG P
Sbjct: 17 CGKAFSQKGSLIVHIRVHTGSGPS 40
>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 9/27 (33%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S L H HTG++P +
Sbjct: 18 CGKAFSVRSSLTTHQAIHTGKKPSGPS 44
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/30 (33%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
TGE+P+ C CGK F+ L
Sbjct: 3 SGSSGTGEKPYECNQ--CGKAFSVRSSLTT 30
Score = 32.1 bits (74), Expect = 0.015
Identities = 9/26 (34%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C++C K F L H H
Sbjct: 10 EKPYECNQCGKAFSVRSSLTTHQAIH 35
>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.7 bits (86), Expect = 4e-04
Identities = 11/29 (37%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TGE+P++C CGK FT L
Sbjct: 2 SSGSSGTGEKPYICAE--CGKAFTIRSNL 28
Score = 36.3 bits (85), Expect = 6e-04
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S+L H + HT ++P +
Sbjct: 18 CGKAFTIRSNLIKHQKIHTKQKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK + C+EC K F +L KH K H
Sbjct: 10 EKPYICAECGKAFTIRSNLIKHQKIH 35
>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.8 bits (86), Expect = 4e-04
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + K S L H R HTGE P
Sbjct: 18 CGKSFIKKSQLHVHQRIHTGENPSGP 43
Score = 35.6 bits (83), Expect = 0.001
Identities = 11/31 (35%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C+ CGK F + +L V
Sbjct: 2 SSGSSGTGEKPYECSD--CGKSFIKKSQLHV 30
Score = 33.7 bits (78), Expect = 0.005
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++CS+C K F++ L H + H
Sbjct: 10 EKPYECSDCGKSFIKKSQLHVHQRIH 35
>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A
Length = 46
Score = 36.4 bits (85), Expect = 5e-04
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S L H R H+GE+P +
Sbjct: 18 CGKSFRWASCLLKHQRVHSGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TGE+P+ C CGK F + L
Sbjct: 2 SSGSSGTGEKPYNCKE--CGKSFRWASCL 28
Score = 33.3 bits (77), Expect = 0.006
Identities = 12/27 (44%), Positives = 15/27 (55%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + C EC K F + L KH + HS
Sbjct: 10 EKPYNCKECGKSFRWASCLLKHQRVHS 36
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 42
Score = 36.1 bits (84), Expect = 6e-04
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + C+EC + F ++ L +H K H+
Sbjct: 8 EKPYSCAECKETFSDNNRLVQHQKMHT 34
Score = 31.9 bits (73), Expect = 0.018
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDEL 183
+GE+P+ C C + F+ ++ L
Sbjct: 5 SSGEKPYSCAE--CKETFSDNNRL 26
Score = 29.6 bits (67), Expect = 0.12
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C + + + L H + HT +
Sbjct: 16 CKETFSDNNRLVQHQKMHTVKSGPSS 41
>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding,
metal-binding, nuclear protein, repeat, transcription,
transcription regulation; NMR {Homo sapiens} SCOP:
k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A
Length = 42
Score = 36.0 bits (84), Expect = 6e-04
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
E ++CSEC K F R D L H +TH+
Sbjct: 8 ENPYECSECGKAFNRKDQLISHQRTHA 34
Score = 35.6 bits (83), Expect = 9e-04
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + + L +H R H GE
Sbjct: 16 CGKAFNRKDQLISHQRTHAGESGPSS 41
Score = 32.9 bits (76), Expect = 0.008
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 2/24 (8%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDEL 183
+GE P+ C+ CGK F R D+L
Sbjct: 5 SSGENPYECSE--CGKAFNRKDQL 26
>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
K QC EC + F HL +H + H
Sbjct: 10 TKSHQCHECGRGFTLKSHLNQHQRIH 35
Score = 36.0 bits (84), Expect = 8e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C + + SHL H R HTGE+P +
Sbjct: 18 CGRGFTLKSHLNQHQRIHTGEKPSGPS 44
Score = 32.5 bits (75), Expect = 0.013
Identities = 6/30 (20%), Positives = 9/30 (30%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ + C CG+ FT L
Sbjct: 3 SGSSGSSTKSHQCH--ECGRGFTLKSHLNQ 30
>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 7e-04
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + S L H HTGE+P
Sbjct: 18 CGKAFSVYSSLTTHQVIHTGEKPSGP 43
Score = 33.3 bits (77), Expect = 0.006
Identities = 9/26 (34%), Positives = 11/26 (42%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
K + C+EC K F L H H
Sbjct: 10 VKPYMCNECGKAFSVYSSLTTHQVIH 35
Score = 33.3 bits (77), Expect = 0.007
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TG +P++C CGK F+ L
Sbjct: 2 SSGSSGTGVKPYMC--NECGKAFSVYSSLTT 30
>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 36.0 bits (84), Expect = 7e-04
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C+K + S L H R HTGE+P +
Sbjct: 18 CHKSFRYGSSLTVHQRIHTGEKPSGPS 44
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/31 (32%), Positives = 13/31 (41%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C C K F L V
Sbjct: 2 SSGSSGTGEKPYKCDV--CHKSFRYGSSLTV 30
Score = 34.0 bits (79), Expect = 0.004
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C CHK F L H + H
Sbjct: 10 EKPYKCDVCHKSFRYGSSLTVHQRIH 35
>1ej6_B Lambda1; icosahedral, non-equivalence, dsRNA virus, methylase,
methyltransferase, guanylyltransferase, zinc finger,
icosahedral virus; 3.60A {Reovirus SP} SCOP: i.7.1.1
PDB: 2cse_V
Length = 1275
Score = 40.6 bits (94), Expect = 7e-04
Identities = 12/54 (22%), Positives = 18/54 (33%), Gaps = 1/54 (1%)
Query: 199 ILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTRCTSLVMNFSDNTVVTE 252
LP T +QC C L H+ +H +L + +TE
Sbjct: 170 GLPPTASSGHGYQCHVCSAVLFSPLDLDAHVASHGLHGNMTL-TSSEIQRHITE 222
>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc
finger domain, structural genomics, NPPSFA; NMR {Homo
sapiens} SCOP: g.37.1.1
Length = 45
Score = 36.0 bits (82), Expect = 8e-04
Identities = 10/33 (30%), Positives = 17/33 (51%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTRCTS 239
EK + C C +F R D + H+++H + S
Sbjct: 8 EKPYSCPVCGLRFKRKDRMSYHVRSHDGSVGKS 40
Score = 27.6 bits (60), Expect = 0.82
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 2/24 (8%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDEL 183
+GE+P+ C CG RF R D +
Sbjct: 5 SSGEKPYSC--PVCGLRFKRKDRM 26
>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif,
transcription regulation, zinc-finger; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 47
Score = 36.0 bits (83), Expect = 8e-04
Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 207 EKRFQC--SECHKKFMRSDHLQKHIKTHSKTR 236
+K F+C C K F R +++ HI+TH + R
Sbjct: 16 DKTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 35.6 bits (82), Expect = 0.001
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
K C GC K + + ++R+H++ H +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
Score = 29.4 bits (66), Expect = 0.15
Identities = 9/34 (26%), Positives = 14/34 (41%), Gaps = 3/34 (8%)
Query: 154 RAHLRWHTGERP---FVCTWQFCGKRFTRSDELQ 184
R + + E P F C + C K F R ++
Sbjct: 4 RGSIDKYVKEMPDKTFECLFPGCTKTFKRRYNIR 37
>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.9 bits (84), Expect = 8e-04
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + S+L H + HTGE+P
Sbjct: 18 CGKAFTDRSNLFTHQKIHTGEKPSGP 43
Score = 35.2 bits (82), Expect = 0.002
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ TGE+P+ C CGK FT L
Sbjct: 2 SSGSSGTGEKPYRCAE--CGKAFTDRSNLFT 30
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F +L H K H
Sbjct: 10 EKPYRCAECGKAFTDRSNLFTHQKIH 35
>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Length = 46
Score = 35.5 bits (83), Expect = 9e-04
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TGERP++CT CGK FT L
Sbjct: 2 SSGSSGTGERPYICTV--CGKAFTDRSNL 28
Score = 35.2 bits (82), Expect = 0.001
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + S+L H + HTGE+P
Sbjct: 18 CGKAFTDRSNLIKHQKIHTGEKPSGP 43
Score = 33.6 bits (78), Expect = 0.005
Identities = 10/26 (38%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
E+ + C+ C K F +L KH K H
Sbjct: 10 ERPYICTVCGKAFTDRSNLIKHQKIH 35
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 47
Score = 35.6 bits (83), Expect = 0.001
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDEL 183
+ TG++P+ C CGK F ++ L
Sbjct: 2 SSGSSGTGKKPYECIE--CGKAFIQNTSL 28
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 143 CNKVYGKTSHLRAHLRW-HTGERPFVCT 169
C K + + + L H R+ HTGE+P +
Sbjct: 18 CGKAFIQNTSLIRHWRYYHTGEKPSGPS 45
Score = 32.2 bits (74), Expect = 0.015
Identities = 8/22 (36%), Positives = 15/22 (68%)
Query: 207 EKRFQCSECHKKFMRSDHLQKH 228
+K ++C EC K F+++ L +H
Sbjct: 10 KKPYECIECGKAFIQNTSLIRH 31
>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 46
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/26 (30%), Positives = 17/26 (65%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
E+ +CS+C K F+++ + +H + H
Sbjct: 10 ERGHRCSDCGKFFLQASNFIQHRRIH 35
Score = 34.4 bits (80), Expect = 0.002
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + + S+ H R HTGE+P +
Sbjct: 18 CGKFFLQASNFIQHRRIHTGEKPSGPS 44
Score = 33.7 bits (78), Expect = 0.005
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 2/28 (7%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDEL 183
GER C+ CGK F ++
Sbjct: 3 SGSSGHGERGHRCSD--CGKFFLQASNF 28
>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
k.12.1.1
Length = 44
Score = 34.8 bits (81), Expect = 0.002
Identities = 8/26 (30%), Positives = 9/26 (34%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVC 168
C K + S L H R H G
Sbjct: 18 CGKAFIWKSLLIVHERTHAGVSGPSS 43
Score = 34.8 bits (81), Expect = 0.002
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C+EC K F+ L H +TH
Sbjct: 10 EKPYECNECGKAFIWKSLLIVHERTH 35
Score = 34.8 bits (81), Expect = 0.002
Identities = 10/31 (32%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ +GE+P+ C CGK F L V
Sbjct: 2 SSGSSGSGEKPYECNE--CGKAFIWKSLLIV 30
>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 32
Score = 33.4 bits (76), Expect = 0.004
Identities = 8/21 (38%), Positives = 12/21 (57%)
Query: 163 ERPFVCTWQFCGKRFTRSDEL 183
+RP+ C C K F R+ +L
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDL 21
Score = 29.2 bits (65), Expect = 0.13
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 207 EKRFQCS--ECHKKFMRSDHLQKHIKTHSK 234
++ + C C K F+R+ L +H K+H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
>3iyl_X VP3; non-enveloped virus, membrane penetration protein, autocleav
myristol group, icosahedral virus; HET: MYR; 3.30A
{Grass carp reovirus} PDB: 3k1q_C 3k1q_B
Length = 1214
Score = 37.9 bits (87), Expect = 0.005
Identities = 7/76 (9%), Positives = 23/76 (30%)
Query: 177 FTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
+ + + + C+ C+ +F L +H+++ +
Sbjct: 84 SDSIAAVANATKPAAVVSDPQSMKVTPIVNPSSYVCNVCNARFSTMSALSEHLRSDHRDD 143
Query: 237 CTSLVMNFSDNTVVTE 252
++L+ N +
Sbjct: 144 ASTLLATPMINNAIRS 159
>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 41
Score = 32.9 bits (76), Expect = 0.008
Identities = 9/24 (37%), Positives = 11/24 (45%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPF 166
C K + + L H R HTG P
Sbjct: 16 CGKSFRQKGSLTLHERIHTGSGPS 39
Score = 32.2 bits (74), Expect = 0.013
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
++ ++C EC K F + L H + H
Sbjct: 8 QRVYECQECGKSFRQKGSLTLHERIH 33
Score = 29.8 bits (68), Expect = 0.099
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 2/24 (8%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDEL 183
+G+R + C Q CGK F + L
Sbjct: 5 SSGQRVYEC--QECGKSFRQKGSL 26
>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2yta_A
Length = 42
Score = 32.3 bits (74), Expect = 0.015
Identities = 11/31 (35%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 155 AHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
GE P++C CGK FT+ L V
Sbjct: 1 GSSGSSGGETPYLCGQ--CGKSFTQRGSLAV 29
Score = 31.9 bits (73), Expect = 0.017
Identities = 8/27 (29%), Positives = 13/27 (48%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
E + C +C K F + L H ++ S
Sbjct: 9 ETPYLCGQCGKSFTQRGSLAVHQRSCS 35
Score = 31.5 bits (72), Expect = 0.025
Identities = 6/24 (25%), Positives = 9/24 (37%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPF 166
C K + + L H R + P
Sbjct: 17 CGKSFTQRGSLAVHQRSCSQSGPS 40
>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 32.2 bits (74), Expect = 0.017
Identities = 8/30 (26%), Positives = 12/30 (40%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+GE+ C CGK F L++
Sbjct: 3 SGSSGSGEKSHTC--DECGKNFCYISALRI 30
Score = 31.8 bits (73), Expect = 0.020
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCT 169
C K + S LR H R H GE+ +
Sbjct: 18 CGKNFCYISALRIHQRVHMGEKCSGPS 44
Score = 31.4 bits (72), Expect = 0.028
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK C EC K F L+ H + H
Sbjct: 10 EKSHTCDECGKNFCYISALRIHQRVHM 36
>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation
domain, Zn finger, DNA-binding regulatory protein; NMR
{Homo sapiens} SCOP: g.37.1.1
Length = 38
Score = 31.2 bits (70), Expect = 0.028
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQV 185
++PF+CT CG+RFT D L V
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAV 26
Score = 27.3 bits (60), Expect = 0.71
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 207 EKRFQCSE--CHKKFMRSDHLQKHIKTHSKT 235
+K F C+ C ++F DHL H H T
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMT 34
>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 46
Score = 30.9 bits (69), Expect = 0.043
Identities = 11/28 (39%), Positives = 19/28 (67%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSK 234
EK F+C++C K F S +L +H + H++
Sbjct: 10 EKCFKCNKCEKTFSCSKYLTQHERIHTR 37
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR
{Saccharomyces cerevisiae} SCOP: g.37.1.1
Length = 30
Score = 29.8 bits (67), Expect = 0.072
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
Query: 208 KRFQCSECHKKFMRSDHLQKHI-KTHS 233
K + C C++ F R D L +H K HS
Sbjct: 1 KAYACGLCNRAFTRRDLLIRHAQKIHS 27
Score = 24.8 bits (54), Expect = 4.5
Identities = 7/21 (33%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 164 RPFVCTWQFCGKRFTRSDELQ 184
+ + C C + FTR D L
Sbjct: 1 KAYACG--LCNRAFTRRDLLI 19
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 36
Score = 29.4 bits (65), Expect = 0.14
Identities = 13/24 (54%), Positives = 16/24 (66%)
Query: 141 EGCNKVYGKTSHLRAHLRWHTGER 164
E CNKV+ L+AHLR HT E+
Sbjct: 13 EYCNKVFKFKHSLQAHLRIHTNEK 36
Score = 29.0 bits (64), Expect = 0.17
Identities = 10/29 (34%), Positives = 15/29 (51%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
K F C C+K F LQ H++ H+ +
Sbjct: 8 KIFTCEYCNKVFKFKHSLQAHLRIHTNEK 36
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.8 bits (71), Expect = 0.16
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 12/39 (30%)
Query: 2 QGQQVQQLQQDPNDPTRFQILNLCSPGGG---GVTTSIE 37
+ Q +++LQ L L + + ++E
Sbjct: 18 EKQALKKLQAS---------LKLYADDSAPALAIKATME 47
>3pt1_A UPF0364 protein YMR027W; alpha/beta fold, carbohydrate phosphatase,
F6P binding, HYDR; HET: F6P; 1.77A {Saccharomyces
cerevisiae}
Length = 471
Score = 32.4 bits (73), Expect = 0.20
Identities = 6/26 (23%), Positives = 12/26 (46%)
Query: 63 TEGGEREMFSYMLHGCLWGNTMEYAL 88
+ + +F + LWGN + +L
Sbjct: 174 IDDILKVLFKEFIEISLWGNATDLSL 199
>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers,
4-stranded parallel/anti-parallel beta- sheet,
structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1
g.37.1.1
Length = 102
Score = 30.5 bits (68), Expect = 0.23
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 1/51 (1%)
Query: 210 FQCSECHKKFMRSDHLQKHI-KTHSKTRCTSLVMNFSDNTVVTEDSKLELS 259
+ C EC+ R D L +H K H L M +N + E + +L+
Sbjct: 51 YVCVECNFLTKRYDALSEHNLKYHPGEENFKLTMVKRNNQTIFEQTINDLT 101
>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA,
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 44
Score = 28.7 bits (63), Expect = 0.28
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
KR++CS+C F HL +H KTH+
Sbjct: 10 RKRYECSKCQATFNLRKHLIQHQKTHA 36
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 32.1 bits (72), Expect = 0.28
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 26/92 (28%)
Query: 164 RPFVCTWQF----CGKRFTR----------SDELQVNGGRFGIERTVVRI----LPMTWC 205
R + TW + T E + R + I L + W
Sbjct: 338 RDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397
Query: 206 REKRFQC----SECHKKFMRSDHLQKHIKTHS 233
+ ++ HK + ++K K +
Sbjct: 398 DVIKSDVMVVVNKLHKYSL----VEKQPKEST 425
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA
motif, metal binding protein; NMR {Synthetic} SCOP:
g.37.1.3 PDB: 2l1o_A
Length = 39
Score = 28.2 bits (63), Expect = 0.35
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
+ + CS C ++F + L H+ H + R
Sbjct: 5 RSYTCSFCKREFRSAQALGGHMNVHRRDR 33
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.37
Identities = 40/243 (16%), Positives = 76/243 (31%), Gaps = 62/243 (25%)
Query: 3 GQQVQQLQQDPNDPTRFQILNLCSPGGGGVTT---SIEMVNQEEDSLEEK--------PR 51
G + + PN IL GV + SI + QE+ +++ P
Sbjct: 307 GVRCYE--AYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQ--VQDYVNKTNSHLPA 362
Query: 52 SRRVACTCPNCTEGGEREMFSYMLHG---CLWGNTMEYALAARVLKLKIYKTTAEVNN-- 106
++V + N G + + ++ G L Y L + K K + + +
Sbjct: 363 GKQVEISLVN----GAK---NLVVSGPPQSL------YGLNLTLRKAKA-PSGLDQSRIP 408
Query: 107 ----KIRLSSYFYPALISTLFSCS-LRTADRKKVHICHIEGCNKVYGKTSHLR------- 154
K++ S+ F P +++ F L A I N V ++
Sbjct: 409 FSERKLKFSNRFLP--VASPFHSHLLVPASDL---INKDLVKNNVSFNAKDIQIPVYDTF 463
Query: 155 --AHLRWHTGE-RPFVCTWQFCGK-RFTRSDELQVN-------GGRFGIERTVVRILPMT 203
+ LR +G + ++ + + + GG G+ R T
Sbjct: 464 DGSDLRVLSGSISERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGT 523
Query: 204 WCR 206
R
Sbjct: 524 GVR 526
>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding
protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB:
2ab7_A
Length = 29
Score = 27.7 bits (61), Expect = 0.45
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 135 VHICHIEGCNKVYGKTSHLRAHLRWHTG 162
V++CH E C + + L H + HTG
Sbjct: 2 VYVCHFENCGRSFNDRRKLNRHKKIHTG 29
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 26
Score = 27.4 bits (60), Expect = 0.66
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTH 232
K + C C K+F++S L HI+ H
Sbjct: 1 KPYVCERCGKRFVQSSQLANHIRHH 25
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
classical zinc finger, transcription; NMR {Homo sapiens}
Length = 30
Score = 27.0 bits (59), Expect = 0.97
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K + C C ++F LQ+H++ H+
Sbjct: 2 KPYVCIHCQRQFADPGALQRHVRIHT 27
Score = 26.6 bits (58), Expect = 1.3
Identities = 8/22 (36%), Positives = 13/22 (59%)
Query: 143 CNKVYGKTSHLRAHLRWHTGER 164
C + + L+ H+R HTGE+
Sbjct: 9 CQRQFADPGALQRHVRIHTGEK 30
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger,
transcription; NMR {Homo sapiens}
Length = 29
Score = 26.7 bits (58), Expect = 1.1
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGER 164
C C K + + S L AH+R HTGE+
Sbjct: 3 CQCVMCGKAFTQASSLIAHVRQHTGEK 29
>3ray_A PR domain-containing protein 11; structural genomics consortium,
SGC, histone methylation, Zn transcriptional regulation,
chromatin, transcription; 1.73A {Homo sapiens}
Length = 237
Score = 29.8 bits (66), Expect = 1.1
Identities = 6/26 (23%), Positives = 10/26 (38%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EKR Q + + + L+ I
Sbjct: 206 EKRLQREKSEQVLDNPEDLRGPIHLS 231
>2d9k_A FLN29 gene product; zinc finger, ZF-TRAF, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 75
Score = 27.6 bits (61), Expect = 1.4
Identities = 6/30 (20%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Query: 205 CREKRFQCSECHKKFMRSDHLQKHIKTHSK 234
C + C C + + D L+ H + +
Sbjct: 39 CGARTELCGNCGRNVLVKD-LKTHPEVCGR 67
>3ax1_A Serrate RNA effector molecule; miRNA processing, protein binding;
2.74A {Arabidopsis thaliana}
Length = 358
Score = 28.8 bits (63), Expect = 2.3
Identities = 6/23 (26%), Positives = 10/23 (43%)
Query: 209 RFQCSECHKKFMRSDHLQKHIKT 231
C K F ++ + KH+K
Sbjct: 306 GCGAKGCTKLFHAAEFVYKHLKL 328
>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
g.37.1.1 g.37.1.1
Length = 96
Score = 27.5 bits (60), Expect = 2.6
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 202 MTWCREKRFQCSECHKKFMRSDHLQKHIKT 231
M C+++ F C C K+ ++ H+
Sbjct: 55 MENCKQEMFTCHHCGKQLRSLAGMKYHVMA 84
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA,
metal-binding, transcription; NMR {Mus musculus}
Length = 27
Score = 25.5 bits (55), Expect = 2.9
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK F CS C ++ + KH++TH
Sbjct: 1 EKPFSCSLCPQRSRDFSAMTKHLRTH 26
>1gkr_A Hydantoinase, non-ATP dependent L-selective hydantoinase;
hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX; 2.60A {Arthrobacter aurescens} SCOP: b.92.1.3
c.1.9.6
Length = 458
Score = 28.3 bits (64), Expect = 3.5
Identities = 10/25 (40%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 30 GGVTTSIEMVNQE-----EDSLEEK 49
GG+TT IEM D+ EK
Sbjct: 85 GGITTIIEMPITFPPTTTLDAFLEK 109
>1nfg_A D-hydantoinase; TIM barrel, hydrolase; HET: KCX; 2.70A {Ralstonia
pickettii} SCOP: b.92.1.3 c.1.9.6
Length = 457
Score = 28.3 bits (64), Expect = 3.6
Identities = 5/25 (20%), Positives = 12/25 (48%), Gaps = 5/25 (20%)
Query: 30 GGVTTSIEMVNQE-----EDSLEEK 49
GG TT ++ Q+ +++ +
Sbjct: 83 GGTTTIVDFCQQDRGHSLAEAVAKW 107
>3sfw_A Dihydropyrimidinase; hydrolase, zinc binding; HET: KCX; 1.73A
{Brevibacillus agri} PDB: 1yny_A 1k1d_A*
Length = 461
Score = 28.3 bits (64), Expect = 3.8
Identities = 3/25 (12%), Positives = 8/25 (32%), Gaps = 5/25 (20%)
Query: 30 GGVTTSIEMVNQE-----EDSLEEK 49
GG T+ ++ ++
Sbjct: 84 GGTTSIVDFCLTSKGESLHSAIATW 108
>4do7_A Amidohydrolase 2; enzyme function initiative, EFI, structural
TIM-barrel fold, putative lactonase; 1.70A {Burkholderia
multivorans} PDB: 4dlm_A 4dnm_A* 4dlf_A
Length = 303
Score = 28.1 bits (62), Expect = 4.2
Identities = 7/32 (21%), Positives = 10/32 (31%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGERP 165
+ + + V K S L W G R
Sbjct: 186 RAALRELAALPHVVCKLSGLVTEADWRRGLRA 217
>3bcy_A Protein YER067W; mixed alpha-helix/beta-sheet fold, unknown
function; 1.70A {Saccharomyces cerevisiae}
Length = 155
Score = 27.2 bits (60), Expect = 4.5
Identities = 10/42 (23%), Positives = 18/42 (42%), Gaps = 2/42 (4%)
Query: 217 KKFMRS--DHLQKHIKTHSKTRCTSLVMNFSDNTVVTEDSKL 256
KKF+R H++KH+ K + F + + K+
Sbjct: 72 KKFVRHLHQHIEKHLLKDIKQAVRKPELKFHEKSKEETFDKI 113
>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 43
Score = 25.2 bits (54), Expect = 4.8
Identities = 10/30 (33%), Positives = 16/30 (53%), Gaps = 1/30 (3%)
Query: 205 CREKRFQCSECHKKFMRSDHLQKH-IKTHS 233
F C+EC +F L++H ++THS
Sbjct: 6 SGNGAFFCNECDCRFSEEASLKRHTLQTHS 35
>2ifr_A Scytalidopepsin B; enzyme-transition state analog complex,
hydrolase-hydrolase complex; HET: TA2; 1.95A
{Scytalidium lignicola} SCOP: b.29.1.20 PDB: 1s2b_A*
1s2k_A* 2ifw_A*
Length = 206
Score = 27.6 bits (61), Expect = 4.9
Identities = 11/75 (14%), Positives = 21/75 (28%), Gaps = 13/75 (17%)
Query: 223 DHLQKHIKTHSKTRCTSLVMNFSDNTVVTEDSKLELSGGSTGAGTPESWINTDGNRCFLV 282
D +Q + S T ++ + N + V++ + T +I
Sbjct: 87 DSIQMSVTATSDTSGSATLENLTTGQKVSKS--FSNESSGSLCRTNAEFI---------- 134
Query: 283 NIEAPGTNGGAESPG 297
IE S
Sbjct: 135 -IEDFEECNSNGSDC 148
>2vm8_A Dihydropyrimidinase-related protein 2; neurogenesis,
phosphoprotein, differentiation, CRMP, cytoplasm, TIM
barrel, polymorphism, axonal pathfinding; 1.9A {Homo
sapiens} PDB: 2gse_A 1kcx_A
Length = 501
Score = 28.0 bits (63), Expect = 5.1
Identities = 6/25 (24%), Positives = 10/25 (40%), Gaps = 5/25 (20%)
Query: 30 GGVTTSIEMVNQE-----EDSLEEK 49
GG T I+ V E + ++
Sbjct: 110 GGTTMIIDHVVPEPGTSLLAAFDQW 134
>2ftw_A Dihydropyrimidine amidohydrolase; (beta-alpha)8-barrel,
beta-sandwich; HET: KCX; 2.05A {Dictyostelium
discoideum} SCOP: b.92.1.3 c.1.9.6
Length = 521
Score = 28.0 bits (63), Expect = 5.6
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 5/25 (20%)
Query: 30 GGVTTSIEMVNQE-----EDSLEEK 49
GG T I+ V ++ ++
Sbjct: 92 GGTTFIIDFVIPTRGQSLLEAYDQW 116
>3dc8_A Dihydropyrimidinase; TIM-barrel, hydrolase; HET: KCX; 1.85A
{Sinorhizobium meliloti}
Length = 490
Score = 27.6 bits (62), Expect = 6.1
Identities = 7/34 (20%), Positives = 12/34 (35%), Gaps = 6/34 (17%)
Query: 30 GGVTTSIEMVNQE-----EDSLEEK-PRSRRVAC 57
GG T ++ ++L +S R C
Sbjct: 82 GGTTMVVDFALPSPGQSLLEALTMWDNKSTRANC 115
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription;
NMR {Mus musculus} SCOP: g.37.1.1
Length = 35
Score = 24.7 bits (53), Expect = 6.5
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKT 235
++ F C C F + +H+K H+ T
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHTDT 33
>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
g.37.1.1
Length = 88
Score = 26.0 bits (56), Expect = 7.4
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 199 ILPMTWCREKR-FQCSECHKKFMRSDHLQKHIKTHSK 234
IL + +QC C K + L H+ H++
Sbjct: 14 ILGNGPRLQNSTYQCKHCDSKLQSTAELTSHLNIHNE 50
>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2
zinc fingers, beta-BETA-alpha, solution structure; NMR
{Saccharomyces cerevisiae}
Length = 64
Score = 25.4 bits (55), Expect = 7.8
Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 7/54 (12%)
Query: 137 ICHIEGCNKVYGKTSHLRAHL-------RWHTGERPFVCTWQFCGKRFTRSDEL 183
C + C + L+ HL + P C W+ C + +
Sbjct: 3 KCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLACNWEDCDFLGDDTASI 56
Score = 25.4 bits (55), Expect = 8.1
Identities = 9/66 (13%), Positives = 21/66 (31%), Gaps = 5/66 (7%)
Query: 167 VCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRSDHLQ 226
C W+ C + + +LQ + + + + + C +C + +
Sbjct: 3 KCKWKECPESASSLFDLQRHLLKDHVSQDFKHPMEPLAC-----NWEDCDFLGDDTASIV 57
Query: 227 KHIKTH 232
HI
Sbjct: 58 NHINAQ 63
>2vr2_A Dihydropyrimidinase; hydantoinase, metal-binding, disease mutation,
dihydropyrimi amidohydrolase, nucleotide metabolism,
DPYS, dhpase, hydrolase; 2.80A {Homo sapiens}
Length = 541
Score = 27.3 bits (61), Expect = 8.2
Identities = 5/25 (20%), Positives = 10/25 (40%), Gaps = 5/25 (20%)
Query: 30 GGVTTSIEMVNQEE-----DSLEEK 49
GG T I+ ++ ++ E
Sbjct: 115 GGTTMIIDFAIPQKGGSLIEAFETW 139
>1gkp_A Hydantoinase; hydrolase, dihydropyrimidinase, cyclic amidase; HET:
KCX EPE; 1.29A {Thermus SP} SCOP: b.92.1.3 c.1.9.6 PDB:
1gkq_A*
Length = 458
Score = 27.1 bits (61), Expect = 9.3
Identities = 7/25 (28%), Positives = 9/25 (36%), Gaps = 5/25 (20%)
Query: 30 GGVTTSIEMVNQE-----EDSLEEK 49
GG TT IEM + +
Sbjct: 84 GGTTTYIEMCCPSRNDDALEGYQLW 108
>2fty_A Dihydropyrimidinase; alpha/beta barrel, beta-sandwich, hydrolase;
HET: KCX; 2.40A {Lachancea kluyveri} SCOP: b.92.1.3
c.1.9.6 PDB: 2fvk_A* 2fvm_A*
Length = 559
Score = 27.0 bits (60), Expect = 9.7
Identities = 7/32 (21%), Positives = 11/32 (34%), Gaps = 5/32 (15%)
Query: 30 GGVTTSIEMVNQE-----EDSLEEKPRSRRVA 56
GG TT + Q+ +L E +
Sbjct: 88 GGTTTVVAFSTQDVSKKGPSALAESVKLDVDE 119
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.133 0.417
Gapped
Lambda K H
0.267 0.0531 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 5,096,953
Number of extensions: 293819
Number of successful extensions: 1523
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1304
Number of HSP's successfully gapped: 535
Length of query: 339
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 245
Effective length of database: 4,077,219
Effective search space: 998918655
Effective search space used: 998918655
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.6 bits)