RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13347
(339 letters)
>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 48.6 bits (116), Expect = 7e-09
Identities = 9/35 (25%), Positives = 17/35 (48%)
Query: 136 HICHIEGCNKVYGKTSHLRAHLRWHTGERPFVCTW 170
C C K + HL+ H++ H+ R ++C +
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHSDTRDYICEF 36
Score = 32.4 bits (74), Expect = 0.004
Identities = 12/26 (46%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 210 FQCSE--CHKKFMRSDHLQKHIKTHS 233
F C E C K F HL++H+K HS
Sbjct: 2 FSCPEPACGKSFNFKKHLKEHMKLHS 27
Score = 30.1 bits (68), Expect = 0.029
Identities = 7/20 (35%), Positives = 8/20 (40%)
Query: 166 FVCTWQFCGKRFTRSDELQV 185
F C CGK F L+
Sbjct: 2 FSCPEPACGKSFNFKKHLKE 21
>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 53
Score = 46.2 bits (109), Expect = 9e-08
Identities = 16/70 (22%), Positives = 25/70 (35%), Gaps = 17/70 (24%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKRFQCSECHKKFMRS 222
++ + C CGK FT + + + + + C C KKF
Sbjct: 1 DKLYPCQ---CGKSFTHKSQRDRH----------MSMHLGLRP----YGCGVCGKKFKMK 43
Query: 223 DHLQKHIKTH 232
HL H+K H
Sbjct: 44 HHLVGHMKIH 53
Score = 37.0 bits (85), Expect = 1e-04
Identities = 14/43 (32%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 143 CNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
C K + S H+ H G RP+ C CGK+F L
Sbjct: 8 CGKSFTHKSQRDRHMSMHLGLRPYGCGV--CGKKFKMKHHLVG 48
Score = 30.8 bits (69), Expect = 0.025
Identities = 8/31 (25%), Positives = 13/31 (41%), Gaps = 1/31 (3%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKTRC 237
+K + C +C K F +H+ H R
Sbjct: 1 DKLYPC-QCGKSFTHKSQRDRHMSMHLGLRP 30
Score = 23.5 bits (50), Expect = 8.6
Identities = 7/34 (20%), Positives = 14/34 (41%), Gaps = 2/34 (5%)
Query: 127 LRTADRKKVHICHIEGCNKVYGKTSHLRAHLRWH 160
+ + + C + C K + HL H++ H
Sbjct: 22 MSMHLGLRPYGCGV--CGKKFKMKHHLVGHMKIH 53
>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 42.2 bits (100), Expect = 1e-06
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
+K FQC C + F RSDHL HI+TH+
Sbjct: 1 QKPFQCRICMRNFSRSDHLTTHIRTHT 27
Score = 28.3 bits (64), Expect = 0.11
Identities = 9/23 (39%), Positives = 13/23 (56%), Gaps = 2/23 (8%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQV 185
++PF C C + F+RSD L
Sbjct: 1 QKPFQCR--ICMRNFSRSDHLTT 21
Score = 28.0 bits (63), Expect = 0.15
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 143 CNKVYGKTSHLRAHLRWHTG 162
C + + ++ HL H+R HTG
Sbjct: 9 CMRNFSRSDHLTTHIRTHTG 28
>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 41.6 bits (98), Expect = 2e-06
Identities = 8/28 (28%), Positives = 20/28 (71%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHT 161
+ ++C +GCNK + ++++L++H+ H
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
Score = 40.8 bits (96), Expect = 3e-06
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 164 RPFVCTWQFCGKRFTRSDELQV 185
RP+VC + C K+F +S L+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKS 22
Score = 38.5 bits (90), Expect = 2e-05
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 208 KRFQCSE--CHKKFMRSDHLQKHIKTHS 233
+ + C C+KKF +S +L+ HI TH+
Sbjct: 1 RPYVCPFDGCNKKFAQSTNLKSHILTHA 28
>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 33
Score = 41.1 bits (97), Expect = 3e-06
Identities = 12/27 (44%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + C EC K F RS L +H + H+
Sbjct: 5 EKPYGCVECGKAFSRSSILVQHQRVHT 31
Score = 36.4 bits (85), Expect = 1e-04
Identities = 12/26 (46%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDELQV 185
H+GE+P+ C CGK F+RS L
Sbjct: 2 HSGEKPYGCV--ECGKAFSRSSILVQ 25
Score = 30.7 bits (70), Expect = 0.017
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGE 163
K + C C K + ++S L H R HTGE
Sbjct: 6 KPYGCVE--CGKAFSRSSILVQHQRVHTGE 33
>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 40.8 bits (96), Expect = 4e-06
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
EK + CS C K F + L H K +
Sbjct: 6 EKPYACSHCDKTFRQKQLLDMHFKRYH 32
Score = 37.7 bits (88), Expect = 4e-05
Identities = 11/28 (39%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 158 RWHTGERPFVCTWQFCGKRFTRSDELQV 185
R HTGE+P+ C+ C K F + L +
Sbjct: 1 RTHTGEKPYACSH--CDKTFRQKQLLDM 26
Score = 26.9 bits (60), Expect = 0.31
Identities = 8/36 (22%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 128 RTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGE 163
RT +K + C C+K + + L H + +
Sbjct: 1 RTHTGEKPYACSH--CDKTFRQKQLLDMHFKRYHDP 34
>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 30
Score = 40.8 bits (96), Expect = 4e-06
Identities = 16/30 (53%), Positives = 19/30 (63%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGE 163
K H C EGC K Y + +L+ HLR HTGE
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHTGE 30
Score = 34.6 bits (80), Expect = 6e-04
Identities = 7/22 (31%), Positives = 14/22 (63%)
Query: 164 RPFVCTWQFCGKRFTRSDELQV 185
+P CT++ C K ++R + L+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKT 22
Score = 33.1 bits (76), Expect = 0.002
Identities = 8/28 (28%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 208 KRFQCSE--CHKKFMRSDHLQKHIKTHS 233
K +C+ C K + R ++L+ H+++H+
Sbjct: 1 KPHKCTFEGCRKSYSRLENLKTHLRSHT 28
>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 31
Score = 40.8 bits (96), Expect = 4e-06
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
+ +C C K + ++ L+ H R HTGE+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHTGEK 31
Score = 34.6 bits (80), Expect = 6e-04
Identities = 18/22 (81%), Positives = 20/22 (90%)
Query: 164 RPFVCTWQFCGKRFTRSDELQV 185
RPF+CTW +CGKRFTRSDELQ
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQR 22
Score = 33.8 bits (78), Expect = 0.001
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 2/28 (7%)
Query: 208 KRFQCS--ECHKKFMRSDHLQKHIKTHS 233
+ F C+ C K+F RSD LQ+H +TH+
Sbjct: 1 RPFMCTWSYCGKRFTRSDELQRHKRTHT 28
>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 32
Score = 40.4 bits (95), Expect = 5e-06
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 2/30 (6%)
Query: 207 EKRFQCSE--CHKKFMRSDHLQKHIKTHSK 234
++ + C C K F+R+ L +H K+H +
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIRHKKSHQE 30
Score = 39.6 bits (93), Expect = 9e-06
Identities = 8/23 (34%), Positives = 12/23 (52%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQV 185
+RP+ C C K F R+ +L
Sbjct: 1 DRPYSCDHPGCDKAFVRNHDLIR 23
Score = 36.5 bits (85), Expect = 1e-04
Identities = 7/30 (23%), Positives = 14/30 (46%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGE 163
+ + C GC+K + + L H + H +
Sbjct: 2 RPYSCDHPGCDKAFVRNHDLIRHKKSHQEK 31
>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 29
Score = 39.5 bits (93), Expect = 9e-06
Identities = 9/26 (34%), Positives = 17/26 (65%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
+ F C C + F R +HL++H ++H+
Sbjct: 1 RSFVCEVCTRAFARQEHLKRHYRSHT 26
Score = 33.0 bits (76), Expect = 0.002
Identities = 9/31 (29%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
+ +C + C + + + HL+ H R HT E+
Sbjct: 1 RSFVCEV--CTRAFARQEHLKRHYRSHTNEK 29
Score = 27.6 bits (62), Expect = 0.17
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 164 RPFVCTWQFCGKRFTRSDELQV 185
R FVC C + F R + L+
Sbjct: 1 RSFVCE--VCTRAFARQEHLKR 20
>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 29
Score = 39.2 bits (92), Expect = 1e-05
Identities = 19/26 (73%), Positives = 21/26 (80%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K+F C EC K+FMRSDHL KHIKTH
Sbjct: 1 KKFACPECPKRFMRSDHLSKHIKTHQ 26
Score = 31.5 bits (72), Expect = 0.006
Identities = 8/31 (25%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
K C C K + ++ HL H++ H ++
Sbjct: 1 KKFACPE--CPKRFMRSDHLSKHIKTHQNKK 29
Score = 25.0 bits (55), Expect = 1.4
Identities = 10/22 (45%), Positives = 11/22 (50%), Gaps = 2/22 (9%)
Query: 164 RPFVCTWQFCGKRFTRSDELQV 185
+ F C C KRF RSD L
Sbjct: 1 KKFACPE--CPKRFMRSDHLSK 20
>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human
(Homo sapiens) [TaxId: 9606]}
Length = 36
Score = 38.8 bits (91), Expect = 2e-05
Identities = 11/28 (39%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
Query: 158 RWHTGERPFVCTWQFCGKRFTRSDELQV 185
R H+GE+P+ C C RFT+S +++
Sbjct: 1 RTHSGEKPYECYI--CHARFTQSGTMKM 26
Score = 37.7 bits (88), Expect = 5e-05
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK ++C CH +F +S ++ HI
Sbjct: 6 EKPYECYICHARFTQSGTMKMHILQK 31
Score = 23.0 bits (50), Expect = 9.7
Identities = 10/37 (27%), Positives = 20/37 (54%), Gaps = 3/37 (8%)
Query: 128 RTADRKKVHICHIEGCNKVYGKTSHLRAH-LRWHTGE 163
RT +K + C+I C+ + ++ ++ H L+ HT
Sbjct: 1 RTHSGEKPYECYI--CHARFTQSGTMKMHILQKHTEN 35
>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 37
Score = 38.6 bits (90), Expect = 2e-05
Identities = 14/26 (53%), Positives = 16/26 (61%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
K FQC +C + F RSDHL H K H
Sbjct: 9 IKPFQCPDCDRSFSRSDHLALHRKRH 34
Score = 38.6 bits (90), Expect = 3e-05
Identities = 12/30 (40%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
R TG +PF C C + F+RSD L +
Sbjct: 2 STRGSTGIKPFQCPD--CDRSFSRSDHLAL 29
>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 38.5 bits (90), Expect = 3e-05
Identities = 13/30 (43%), Positives = 17/30 (56%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGE 163
K C EGC K + +LR H+R HTG+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHTGD 30
Score = 34.7 bits (80), Expect = 6e-04
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 164 RPFVCTWQFCGKRFTRSDELQV 185
+PF CT++ CGKRF+ L+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRT 22
Score = 30.8 bits (70), Expect = 0.014
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
Query: 208 KRFQCSE--CHKKFMRSDHLQKHIKTHS 233
K FQC+ C K+F +L+ H++ H+
Sbjct: 1 KPFQCTFEGCGKRFSLDFNLRTHVRIHT 28
>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 29
Score = 38.5 bits (90), Expect = 3e-05
Identities = 9/29 (31%), Positives = 19/29 (65%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTG 162
+ + C +E C++ + +++ L H+R HTG
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHTG 29
Score = 36.1 bits (84), Expect = 2e-04
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 164 RPFVCTWQFCGKRFTRSDELQV 185
RP+ C + C +RF+RS +L
Sbjct: 1 RPYACPVESCDRRFSRSADLTR 22
Score = 35.0 bits (81), Expect = 4e-04
Identities = 9/28 (32%), Positives = 16/28 (57%), Gaps = 2/28 (7%)
Query: 208 KRFQCSE--CHKKFMRSDHLQKHIKTHS 233
+ + C C ++F RS L +HI+ H+
Sbjct: 1 RPYACPVESCDRRFSRSADLTRHIRIHT 28
>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 35
Score = 37.8 bits (88), Expect = 5e-05
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSKT 235
++ F C C F + +H+K H+ T
Sbjct: 5 KRPFVCRICLSAFTTKANCARHLKVHTDT 33
Score = 32.8 bits (75), Expect = 0.003
Identities = 7/26 (26%), Positives = 10/26 (38%), Gaps = 2/26 (7%)
Query: 160 HTGERPFVCTWQFCGKRFTRSDELQV 185
+G+RPF + C FT
Sbjct: 2 SSGKRPF--VCRICLSAFTTKANCAR 25
Score = 23.2 bits (50), Expect = 6.8
Identities = 5/21 (23%), Positives = 9/21 (42%)
Query: 143 CNKVYGKTSHLRAHLRWHTGE 163
C + ++ HL+ HT
Sbjct: 13 CLSAFTTKANCARHLKVHTDT 33
>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 47
Score = 38.0 bits (88), Expect = 5e-05
Identities = 6/35 (17%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 151 SHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
+ +++ ++ F C + C K F R ++
Sbjct: 5 GSIDKYVK-EMPDKTFECLFPGCTKTFKRRYNIRS 38
Score = 34.9 bits (80), Expect = 7e-04
Identities = 9/31 (29%), Positives = 17/31 (54%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
K C GC K + + ++R+H++ H +R
Sbjct: 17 KTFECLFPGCTKTFKRRYNIRSHIQTHLEDR 47
>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 39
Score = 37.7 bits (88), Expect = 6e-05
Identities = 14/37 (37%), Positives = 19/37 (51%), Gaps = 3/37 (8%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRW-HTGERPFVC 168
K +IC C K + + HL H++ HT ERP C
Sbjct: 3 GKPYICQS--CGKGFSRPDHLNGHIKQVHTSERPHKC 37
Score = 35.7 bits (83), Expect = 3e-04
Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIK-THS 233
K + C C K F R DHL HIK H+
Sbjct: 3 GKPYICQSCGKGFSRPDHLNGHIKQVHT 30
Score = 28.4 bits (64), Expect = 0.12
Identities = 9/25 (36%), Positives = 14/25 (56%), Gaps = 2/25 (8%)
Query: 161 TGERPFVCTWQFCGKRFTRSDELQV 185
+ +P++C CGK F+R D L
Sbjct: 1 SVGKPYICQ--SCGKGFSRPDHLNG 23
>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing
protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 35.5 bits (82), Expect = 3e-04
Identities = 12/28 (42%), Positives = 17/28 (60%)
Query: 206 REKRFQCSECHKKFMRSDHLQKHIKTHS 233
+R++C EC K F S L KH +TH+
Sbjct: 9 ERRRYKCDECGKSFSHSSDLSKHRRTHT 36
Score = 34.4 bits (79), Expect = 0.001
Identities = 8/30 (26%), Positives = 11/30 (36%), Gaps = 2/30 (6%)
Query: 156 HLRWHTGERPFVCTWQFCGKRFTRSDELQV 185
R + C CGK F+ S +L
Sbjct: 3 SEWQQRERRRYKCDE--CGKSFSHSSDLSK 30
Score = 26.7 bits (59), Expect = 0.41
Identities = 10/36 (27%), Positives = 16/36 (44%), Gaps = 2/36 (5%)
Query: 128 RTADRKKVHICHIEGCNKVYGKTSHLRAHLRWHTGE 163
++ + C G + + +S L H R HTGE
Sbjct: 5 WQQRERRRYKCDECGKS--FSHSSDLSKHRRTHTGE 38
>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 28
Score = 35.2 bits (81), Expect = 3e-04
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHSK 234
EK F C C +KF RSD ++H K H +
Sbjct: 1 EKPFACDICGRKFARSDERKRHTKIHLR 28
Score = 31.7 bits (72), Expect = 0.006
Identities = 11/20 (55%), Positives = 14/20 (70%), Gaps = 2/20 (10%)
Query: 163 ERPFVCTWQFCGKRFTRSDE 182
E+PF C CG++F RSDE
Sbjct: 1 EKPFACD--ICGRKFARSDE 18
>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 26
Score = 34.9 bits (81), Expect = 4e-04
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K ++C EC K F ++ L H + H+
Sbjct: 1 KPYKCLECGKAFSQNSGLINHQRIHT 26
Score = 24.5 bits (54), Expect = 2.0
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 143 CNKVYGKTSHLRAHLRWHT 161
C K + + S L H R HT
Sbjct: 8 CGKAFSQNSGLINHQRIHT 26
>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 32
Score = 31.9 bits (72), Expect = 0.007
Identities = 9/26 (34%), Positives = 15/26 (57%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTH 232
EK + C C +F R D + H+++H
Sbjct: 1 EKPYSCPVCGLRFKRKDRMSYHVRSH 26
>d2j7ja1 g.37.1.1 (A:1-28) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 28
Score = 31.6 bits (71), Expect = 0.007
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 135 VHICHIEGCNKVYGKTSHLRAHLRWHT 161
+++CH E C K + K + L+ H HT
Sbjct: 1 MYVCHFENCGKAFKKHNQLKVHQFSHT 27
Score = 23.5 bits (50), Expect = 5.4
Identities = 8/21 (38%), Positives = 16/21 (76%)
Query: 166 FVCTWQFCGKRFTRSDELQVN 186
+VC ++ CGK F + ++L+V+
Sbjct: 2 YVCHFENCGKAFKKHNQLKVH 22
>d1bhia_ g.37.1.1 (A:) Transactivation domain of cre-bp1/atf-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 38
Score = 31.8 bits (72), Expect = 0.007
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 163 ERPFVCTWQFCGKRFTRSDELQV 185
++PF+CT CG+RFT D L V
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAV 26
Score = 27.5 bits (61), Expect = 0.22
Identities = 11/31 (35%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 207 EKRFQCSE--CHKKFMRSDHLQKHIKTHSKT 235
+K F C+ C ++F DHL H H T
Sbjct: 4 DKPFLCTAPGCGQRFTNEDHLAVHKHKHEMT 34
>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 29
Score = 31.0 bits (70), Expect = 0.011
Identities = 11/29 (37%), Positives = 16/29 (55%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTG 162
K ++C + GC K Y S LR H++ G
Sbjct: 1 KPYVCKLPGCTKRYTDPSSLRKHVKTVHG 29
>d1tf3a1 g.37.1.1 (A:1-40) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 31
Score = 31.1 bits (70), Expect = 0.011
Identities = 14/30 (46%), Positives = 16/30 (53%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGE 163
K +IC C Y K L+AHL HTGE
Sbjct: 2 KRYICSFADCGAAYNKNWKLQAHLSKHTGE 31
>d1gkra2 c.1.9.6 (A:55-379) L-hydantoinase {Arthrobacter aurescens
[TaxId: 43663]}
Length = 325
Score = 33.5 bits (75), Expect = 0.027
Identities = 22/228 (9%), Positives = 62/228 (27%), Gaps = 13/228 (5%)
Query: 30 GGVTTSIEMVNQE------EDSLEEKPRSRRVACTCPNCTEGGEREMFSYMLHGCLWGNT 83
GG+TT IEM + LE+K ++ + GG + G
Sbjct: 31 GGITTIIEMPITFPPTTTLDAFLEKKKQAGQRLKVDFALYGGGVPGNLPEIRKMHDAGAV 90
Query: 84 MEYALAARVLKLKIYKTTAEVNNKI--RLSSYFYPALISTLFSCSLRTADRKKVHICHIE 141
++ A + + +I +++ ++ ++ ++ +
Sbjct: 91 GFKSMMAASVPGMFDAVSDGELFEIFQEIAACGSVIVVHAENETIIQALQKQIKAAGGKD 150
Query: 142 GCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQV-----NGGRFGIERTV 196
+ + + D +++ + G+ +
Sbjct: 151 MAAYEASQPVFQENEAIQRALLLQKEAGCRLIVLHVSNPDGVELIHQAQSEGQDVHCESG 210
Query: 197 VRILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTRCTSLVMNF 244
+ L +T +R +RS + + + + +
Sbjct: 211 PQYLNITTDDAERIGPYMKVAPPVRSAEMNIRLWEQLENGLIDTLGSD 258
>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 37
Score = 29.7 bits (67), Expect = 0.036
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHSKTR 236
+ + CS C ++F + L H+ H + R
Sbjct: 4 RSYTCSFCKREFRSAQALGGHMNVHRRDR 32
Score = 23.1 bits (50), Expect = 9.4
Identities = 6/31 (19%), Positives = 12/31 (38%), Gaps = 2/31 (6%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGER 164
+ + C C + + L H+ H +R
Sbjct: 4 RSYTCSF--CKREFRSAQALGGHMNVHRRDR 32
>d2epra1 g.37.1.1 (A:350-384) PATZ1 {Human (Homo sapiens) [TaxId:
9606]}
Length = 35
Score = 28.5 bits (63), Expect = 0.12
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Query: 133 KKVHICHIEGCNKVYGKTSHLRAHLRWHTGERPF 166
+K C E C K++ HL H H+GE+P+
Sbjct: 3 RKQVAC--EICGKIFRDVYHLNRHKLSHSGEKPY 34
Score = 24.6 bits (53), Expect = 2.2
Identities = 10/26 (38%), Positives = 13/26 (50%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHS 233
K+ C C K F HL +H +HS
Sbjct: 4 KQVACEICGKIFRDVYHLNRHKLSHS 29
>d2glia2 g.37.1.1 (A:135-167) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 33
Score = 27.8 bits (62), Expect = 0.16
Identities = 12/34 (35%), Positives = 17/34 (50%), Gaps = 5/34 (14%)
Query: 134 KVHICHIEGCNKVYGKT----SHLRAHLRWHTGE 163
K +CH GC++ + L H+R HTGE
Sbjct: 1 KEFVCHWGGCSR-ELRPFKAQYMLVVHMRRHTGE 33
>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 28
Score = 27.5 bits (61), Expect = 0.17
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 209 RFQCSECHKKFMRSDHLQKHIKTHSKTR 236
++ C EC + + L+KHI+TH+ R
Sbjct: 1 KYICEECGIRAKKPSMLKKHIRTHTDVR 28
Score = 26.8 bits (59), Expect = 0.41
Identities = 12/29 (41%), Positives = 15/29 (51%), Gaps = 2/29 (6%)
Query: 136 HICHIEGCNKVYGKTSHLRAHLRWHTGER 164
+IC E C K S L+ H+R HT R
Sbjct: 2 YIC--EECGIRAKKPSMLKKHIRTHTDVR 28
>d1ynya2 c.1.9.6 (A:53-384) D-hydantoinase {Bacillus sp. AR9 [TaxId:
301298]}
Length = 332
Score = 31.1 bits (69), Expect = 0.19
Identities = 27/231 (11%), Positives = 55/231 (23%), Gaps = 20/231 (8%)
Query: 30 GGVTTSIEMVNQE--EDSLEEKPRSRRVACTCPNCTEGGEREMFSYMLHGCLWGNTMEYA 87
GG T+ ++ + E A G F M+ E
Sbjct: 32 GGTTSIVDFCLTKKGESLKSAIATWHEKARGKAVIDYG-----FHLMIAEANDQVLEELE 86
Query: 88 LAARVLKLKIYKTTAEVNNKIRLSSYFYPALISTLFSCSLRTADRKKVHICHIEGCNKVY 147
+ K + A TLF ++ + + H E + +
Sbjct: 87 SVISSEGITSLKV-------FMAYKNVFQADDETLFKTLVKAKELGALVQVHAENGDVLD 139
Query: 148 GKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCRE 207
T A + + G+ R+ L G V + E
Sbjct: 140 YLTKKALAEGNTDPIYHAYTRPPEAEGEATGRAIALTALAGSQLYVVHVSCASAVQRIAE 199
Query: 208 KRFQ------CSECHKKFMRSDHLQKHIKTHSKTRCTSLVMNFSDNTVVTE 252
R + + + + + +K + + + V+
Sbjct: 200 AREKGWNVYGETCPQYLALDVSIMDQPDFEGAKYVWSPPLREKWNQEVLWS 250
>d2fvka2 c.1.9.6 (A:57-440) Dihydropyrimidine amidohydrolase Pyd2
{Yeast (Saccharomyces kluyveri) [TaxId: 4934]}
Length = 384
Score = 30.3 bits (67), Expect = 0.32
Identities = 24/190 (12%), Positives = 49/190 (25%), Gaps = 15/190 (7%)
Query: 30 GGVTTSIEMVNQE-----EDSLEEKPRSRRVACTCPNCTEGGEREMFSYMLHGCLWGNTM 84
GG TT + Q+ +L E + + Y LH L+
Sbjct: 33 GGTTTVVAFSTQDVSKKGPSALAESVKLDVDE-------YSEQTLYCDYGLHLILFQIEK 85
Query: 85 EYALAARVLKLKIYKTTAEV---NNKIRLSSYFYPALISTLFSCSLRTADRKKVHICHIE 141
A +L +++ + + K+ ++ + S T + H E
Sbjct: 86 PSVEARELLDVQLQAAYNDYGVSSVKMFMTYPGLQISDYDIMSAMYATRKNGFTTMLHAE 145
Query: 142 GCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILP 201
+ V L G+ R+ L + V
Sbjct: 146 NGDMVKWMIEALEEQGLTDAYYHGVSRPSIVEGEATNRAITLATTMDTPILFVHVSSPQA 205
Query: 202 MTWCREKRFQ 211
++ + +
Sbjct: 206 AEVIKQAQTK 215
>d2dlqa4 g.37.1.1 (A:8-34) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 27
Score = 27.0 bits (59), Expect = 0.32
Identities = 9/26 (34%), Positives = 16/26 (61%)
Query: 211 QCSECHKKFMRSDHLQKHIKTHSKTR 236
+C CHKKF+ +L+ H + H+ +
Sbjct: 2 ECPTCHKKFLSKYYLKVHNRKHTGEK 27
Score = 23.9 bits (51), Expect = 3.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 143 CNKVYGKTSHLRAHLRWHTGER 164
C+K + +L+ H R HTGE+
Sbjct: 6 CHKKFLSKYYLKVHNRKHTGEK 27
>d1xrta2 c.1.9.6 (A:56-365) Two-domain dihydroorotase {Aquifex
aeolicus [TaxId: 63363]}
Length = 310
Score = 30.0 bits (66), Expect = 0.37
Identities = 23/247 (9%), Positives = 55/247 (22%), Gaps = 18/247 (7%)
Query: 30 GGVTTSIEMVNQE--EDSLEEKPRSRRVACTCPNCTEGGEREMFSYMLHGCLWGNTMEYA 87
GG TT + M N D+ + + + C R + + + G +
Sbjct: 30 GGFTTIVCMPNTNPPIDNTTVVNYILQKSKSVGLC-----RVLPTGTITKGRKGKEIADF 84
Query: 88 LAARVLKLKIYKTT----AEVNNKIRLSSYFYPALISTLFSCSLRTADRKKVHICHIEGC 143
+ + + + + + + + C ++ +
Sbjct: 85 YSLKEAGCVAFTDDGSPVMDSSVMRKALELASQLGVPIMDHCEDDKLAYGVINEGEVSAL 144
Query: 144 NKVYGKTSHLRAHLRWHTGERPFV--CTWQFCGKRFTRSDELQVNGGRFGIERTVVRI-- 199
+ + G S E+ G++ T
Sbjct: 145 LGLSSRAPEAEEIQIARDGILAQRTGGHVHIQHVSTKLSLEIIEFFKEKGVKITCEVNPN 204
Query: 200 -LPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTRCTSLVMNFSDNTVVTEDSKLEL 258
L T + +R + + K +D+ K +
Sbjct: 205 HLLFTEREVLNSGANARVNPPLRKKEDRLALIEGVKRGIIDCFA--TDHAPHQTFEKELV 262
Query: 259 SGGSTGA 265
G
Sbjct: 263 EFAMPGI 269
>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 26
Score = 26.7 bits (58), Expect = 0.38
Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
Query: 210 FQCSECHKKFMRSDHLQKH-IKTH 232
++CS C ++FM+ LQ H IK H
Sbjct: 3 YKCSSCSQQFMQKKDLQSHMIKLH 26
>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on
Saccharomyces cerevisiae sequence}
Length = 31
Score = 26.3 bits (58), Expect = 0.48
Identities = 10/25 (40%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 210 FQCSECHKKFMRSDHLQKH-IKTHS 233
+ C C++ F R D L +H K HS
Sbjct: 2 YPCGLCNRAFTRRDLLIRHAQKIHS 26
Score = 23.6 bits (51), Expect = 5.4
Identities = 8/19 (42%), Positives = 10/19 (52%), Gaps = 2/19 (10%)
Query: 165 PFVCTWQFCGKRFTRSDEL 183
P+ C C + FTR D L
Sbjct: 1 PYPCG--LCNRAFTRRDLL 17
>d1tf3a2 g.37.1.1 (A:41-70) Transcription factor IIIA, TFIIIA
{Xenopus laevis [TaxId: 8355]}
Length = 30
Score = 26.2 bits (57), Expect = 0.65
Identities = 12/26 (46%), Positives = 13/26 (50%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWHTGE 163
C EGC K + HL H HTGE
Sbjct: 5 CKEEGCEKGFTSLHHLTRHSLTHTGE 30
>d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 186
Score = 28.8 bits (63), Expect = 0.76
Identities = 15/132 (11%), Positives = 28/132 (21%), Gaps = 1/132 (0%)
Query: 24 LCSPGGGGVTTSIEMVNQEEDSLEEKPRSRRVACTCPNCTEGGEREMFSYMLHGCLWGNT 83
+ P G G +T ++ + E S G + S + N
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEVNGKDYNFVSVDEFKSMIKNN 65
Query: 84 MEYALAARVLKLKIYKTTAEVNNKIRLSSYFYPALISTLFSCSLRTADRKKVHICHIEGC 143
A+ T A V + + + +
Sbjct: 66 EFIE-WAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGVKSVKAIPELNARFLFIAPPS 124
Query: 144 NKVYGKTSHLRA 155
+ K R
Sbjct: 125 VEDLKKRLEGRG 136
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 239
Score = 28.7 bits (63), Expect = 0.85
Identities = 12/99 (12%), Positives = 20/99 (20%)
Query: 80 WGNTMEYALAARVLKLKIYKTTAEVNNKIRLSSYFYPALISTLFSCSLRTADRKKVHICH 139
Y L + K+ Y A + +FS
Sbjct: 103 HNKENIYIPEMIFGHLLTSSNYDDDEKKVTGGRNGYGAKLCNIFSTEFILETADLNVGQK 162
Query: 140 IEGCNKVYGKTSHLRAHLRWHTGERPFVCTWQFCGKRFT 178
+ H + G T++ RF
Sbjct: 163 YVQKWENNMSICHPPKITSYKKGPSYTKVTFKPDLTRFG 201
>d2drpa2 g.37.1.1 (A:140-165) Tramtrack protein (two zinc-finger
peptide) {Drosophila melanogaster [TaxId: 7227]}
Length = 26
Score = 25.4 bits (55), Expect = 1.0
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 210 FQCSECHKKFMRSDHLQKHIK 230
+ C C K+F R D++ H+K
Sbjct: 2 YPCPFCFKEFTRKDNMTAHVK 22
>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo
sapiens) [TaxId: 9606]}
Length = 44
Score = 25.5 bits (55), Expect = 1.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKTHSK 234
K ++C+ C K+FM D +H+ + +K
Sbjct: 4 KPYECNICAKRFMWRDSFHRHVTSCTK 30
>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 25.0 bits (54), Expect = 1.4
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 212 CSECHKKFMRSDHLQKHIKTHS 233
C+EC K F+ S L++H H+
Sbjct: 5 CAECGKAFVESSKLKRHQLVHT 26
Score = 24.6 bits (53), Expect = 1.9
Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
Query: 134 KVHICHIEGCNKVYGKTSHLRAHLRWHTGE 163
+VH+C C K + ++S L+ H HTGE
Sbjct: 1 RVHVCAE--CGKAFVESSKLKRHQLVHTGE 28
>d1x6fa1 g.37.1.1 (A:8-82) Zinc finger protein 462, ZNF462 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 26.2 bits (57), Expect = 1.5
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 210 FQCSECHKKFMRSDHLQKHIKTHSK 234
+QC C K + L H+ H++
Sbjct: 19 YQCKHCDSKLQSTAELTSHLNIHNE 43
>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 26
Score = 25.0 bits (54), Expect = 1.7
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 211 QCSECHKKFMRSDHLQKHIKTHS 233
+C C K F R D L+ H++ H+
Sbjct: 3 KCEVCGKCFSRKDKLKTHMRCHT 25
Score = 23.9 bits (51), Expect = 3.7
Identities = 11/27 (40%), Positives = 15/27 (55%), Gaps = 2/27 (7%)
Query: 136 HICHIEGCNKVYGKTSHLRAHLRWHTG 162
H C E C K + + L+ H+R HTG
Sbjct: 2 HKC--EVCGKCFSRKDKLKTHMRCHTG 26
>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}
Length = 30
Score = 24.7 bits (53), Expect = 1.8
Identities = 13/30 (43%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 208 KRFQCSECHKKFMRSDHLQKHIKT-HSKTR 236
K +QC C + S +L+ HIKT HSK +
Sbjct: 1 KTYQCQYCEFRSADSSNLKTHIKTKHSKEK 30
>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 67
Score = 25.8 bits (57), Expect = 1.8
Identities = 6/23 (26%), Positives = 13/23 (56%)
Query: 209 RFQCSECHKKFMRSDHLQKHIKT 231
+C C + F+ S +L+ H ++
Sbjct: 15 LHRCLACARYFIDSTNLKTHFRS 37
>d1zlqa1 c.94.1.1 (A:3-501) Nickel-binding periplasmic protein NikA
{Escherichia coli [TaxId: 562]}
Length = 499
Score = 27.1 bits (58), Expect = 3.6
Identities = 15/100 (15%), Positives = 26/100 (26%), Gaps = 8/100 (8%)
Query: 144 NKVYGKTSHLRAHLRWHTGERPF-----VCTWQFCGKRFTRSDELQVNGGRFGIERTVVR 198
K + T LR +++ GE PF ++ R L++ ++
Sbjct: 58 GKTW--TFTLRDDVKFSNGE-PFDAEAAAENFRAVLDNRQRHAWLELANQIVDVKALSKT 114
Query: 199 ILPMTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTRCT 238
L +T E K H
Sbjct: 115 ELQITLKSAYYPFLQELALPRPFRFIAPSQFKNHETMNGI 154
>d1ubdc1 g.37.1.1 (C:295-322) Ying-yang 1 (yy1, zinc finger domain)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 28
Score = 23.8 bits (51), Expect = 4.0
Identities = 9/23 (39%), Positives = 13/23 (56%)
Query: 138 CHIEGCNKVYGKTSHLRAHLRWH 160
C +GC K++ S +R HL H
Sbjct: 4 CPHKGCTKMFRDNSAMRKHLHTH 26
>d2dlqa3 g.37.1.1 (A:63-92) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 30
Score = 23.9 bits (51), Expect = 4.2
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 207 EKRFQCSECHKKFMRSDHLQKHIKTHS 233
E+ F CS C + F R L+ H+ +H+
Sbjct: 2 EQVFTCSVCQETFRRRMELRLHMVSHT 28
>d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 190
Score = 26.4 bits (57), Expect = 4.5
Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 2/133 (1%)
Query: 24 LCSPGGGGVTTSIEMVNQEEDSLEEKPRSRRVACTCPNCTEGGEREMFSYMLHGCLWGNT 83
L P G G +T ++ + QE S+ S P +G ++ +
Sbjct: 5 LSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGEEDG--KDYYFVTREMMQRDIA 62
Query: 84 MEYALAARVLKLKIYKTTAEVNNKIRLSSYFYPALISTLFSCSLRTADRKKVHICHIEGC 143
+ +Y T+ E ++ + + S++ D ++I
Sbjct: 63 AGDFIEHAEFSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKTDLCPIYIFVQPPS 122
Query: 144 NKVYGKTSHLRAH 156
V + LR
Sbjct: 123 LDVLEQRLRLRNT 135
>d1hh5a_ a.138.1.1 (A:) Cytochrome c7 (cytochrome c551.5, PpcA)
{Desulfuromonas acetoxidans [TaxId: 891]}
Length = 68
Score = 24.5 bits (53), Expect = 5.9
Identities = 5/23 (21%), Positives = 7/23 (30%), Gaps = 6/23 (26%)
Query: 202 MTWC----REKRF--QCSECHKK 218
C + +C CH K
Sbjct: 46 KDACKTCHKSNNGPTKCGGCHIK 68
>d2glia4 g.37.1.1 (A:198-228) Five-finger GLI1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 31
Score = 23.3 bits (50), Expect = 6.0
Identities = 5/17 (29%), Positives = 11/17 (64%)
Query: 164 RPFVCTWQFCGKRFTRS 180
+P++C + C K F+ +
Sbjct: 1 KPYMCEHEGCSKAFSNA 17
>d2dlqa2 g.37.1.1 (A:35-62) GLI-Krueppel family member HKR3 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 28
Score = 23.5 bits (50), Expect = 6.1
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 210 FQCSECHKKFMRSDHLQKHIKTHSKTR 236
F+C +C K + R ++L +H + R
Sbjct: 2 FECPKCGKCYFRKENLLEHEARNCMNR 28
>d1kcxa2 c.1.9.6 (A:67-400) Dihydropyrimidinase related protein-1
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 334
Score = 26.1 bits (56), Expect = 6.8
Identities = 24/222 (10%), Positives = 49/222 (22%), Gaps = 20/222 (9%)
Query: 30 GGVTTSIEMVNQE--EDSLEEKPRSRRVACTCPNCTEGGEREMFSYMLHGCLWGNTMEYA 87
GG T I+ V E L + A T C + G E
Sbjct: 33 GGTTMIIDHVVPEPGSSLLTSFEKWHEAADTKSCCDYS-----LHVDITSWYDGVREELE 87
Query: 88 LAARVLKLKIYKTTAEVNNKIRLSSYFYPALISTLFSCSLRTADRKKVHICHIEGCNKVY 147
+ + + ++ + ++S S L+ V + H E + +
Sbjct: 88 VLVQDKGVNSFQVYMAYKDLYQMSD-------SQLYEAFTFLKGLGAVILVHAENGDLIA 140
Query: 148 GKTSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGI------ERTVVRILP 201
+ + + + R+ + + I
Sbjct: 141 QEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIAL 200
Query: 202 MTWCREKRFQCSECHKKFMRSDHLQKHIKTHSKTRCTSLVMN 243
F H + TS ++
Sbjct: 201 ARKKGPLVFGEPIAASLGTDGTHYWSKNWAKAAAFVTSPPLS 242
>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 92
Score = 24.7 bits (54), Expect = 8.2
Identities = 5/14 (35%), Positives = 9/14 (64%)
Query: 209 RFQCSECHKKFMRS 222
+++C EC K +R
Sbjct: 68 KYRCGECGKAHLRE 81
>d1alna1 c.97.1.1 (A:1-150) Two-domain cytidine deaminase
{Escherichia coli [TaxId: 562]}
Length = 150
Score = 25.2 bits (55), Expect = 9.0
Identities = 7/47 (14%), Positives = 15/47 (31%), Gaps = 3/47 (6%)
Query: 125 CSLRTADRKKVHICHIEGCNKVYGKTSH-LRAHL--RWHTGERPFVC 168
R ++E +T H ++ + W +GE+
Sbjct: 75 AIARGVSGTWYFGANMEFIGATMQQTVHAEQSAISHAWLSGEKALAA 121
>d2j07a1 a.99.1.1 (A:172-405) C-terminal domain of DNA photolyase
{Thermus thermophilus [TaxId: 274]}
Length = 234
Score = 25.3 bits (54), Expect = 9.6
Identities = 7/99 (7%), Positives = 12/99 (12%), Gaps = 2/99 (2%)
Query: 150 TSHLRAHLRWHTGERPFVCTWQFCGKRFTRSDELQVNGGRFGIERTVVRILPMTWCREKR 209
S L + + R + M
Sbjct: 38 GSRLSPYFALGVLSPRLAAWEAERRGGEGARKWVAELLWRDFSYHLLYHFPWMAERPLDP 97
Query: 210 FQCSECHKKFMRSDHLQKHIKTHSKTRCTSLVMNFSDNT 248
Q + + M T
Sbjct: 98 RFQ--AFPWQEDEALFQAWYEGKTGVPLVDAAMRELHAT 134
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.133 0.417
Gapped
Lambda K H
0.267 0.0571 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,277,576
Number of extensions: 59466
Number of successful extensions: 328
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 115
Length of query: 339
Length of database: 2,407,596
Length adjustment: 86
Effective length of query: 253
Effective length of database: 1,226,816
Effective search space: 310384448
Effective search space used: 310384448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.5 bits)