BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13349
(604 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866
pdb|2HYD|B Chain B, Multidrug Abc Transporter Sav1866
pdb|2ONJ|A Chain A, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|2ONJ|B Chain B, Structure Of The Multidrug Abc Transporter Sav1866 From S.
Aureus In Complex With Amp-Pnp
pdb|4A82|A Chain A, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|B Chain B, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|C Chain C, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966.
pdb|4A82|D Chain D, Fitted Model Of Staphylococcus Aureus Sav1866 Model Abc
Transporter In The Human Cystic Fibrosis Transmembrane
Conductance Regulator Volume Map Emd-1966
Length = 578
Score = 270 bits (690), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 160/420 (38%), Positives = 240/420 (57%), Gaps = 14/420 (3%)
Query: 184 LFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREA 243
+FPF YI T+ F RL K ++ A + + G + + I VK F+ EA
Sbjct: 170 IFPF------YILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEA 223
Query: 244 NYARFAMIDFLKKIYQQMRLIS-SFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAA 302
+FL + + R + SF IN + + I+ G +L G + +G +AA
Sbjct: 224 KNFDKKNTNFLTRALKHTRWNAYSFAAINTVTDIGPII-VIGVGAYLAISGSITVGTLAA 282
Query: 303 ATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFF 362
L G ++ L +S ++ ++ + Y I + A+ + + G+I
Sbjct: 283 FVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDI 342
Query: 363 KNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+VSF Y D + I+ +++L+I+ GE + VG SG GKST+ NL+ RFYD+ G+ILIDG
Sbjct: 343 DHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDG 402
Query: 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKS 481
NI + SLR QIG+V QD L ++++NIL GRP A++ E+ AAK A A FI +
Sbjct: 403 HNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMN 462
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
L +GYD VGE G+KLSGGQ+QR++IAR+ L N PIL+LDEATSALD E+E IQ
Sbjct: 463 LP-----QGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQ 517
Query: 542 KSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQN 601
++L L K +T + +AHRLSTI+ D+++V++NG + E G+H +L+ K G Y L+ QN
Sbjct: 518 EALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQN 577
>pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 598
Score = 236 bits (601), Expect = 3e-62, Method: Compositional matrix adjust.
Identities = 142/392 (36%), Positives = 227/392 (57%), Gaps = 26/392 (6%)
Query: 219 MTGRITDAYANIMTVKLFSHAGREANYARFAMI-DFLKKIYQQMRLISSFEIINHLLAML 277
+ G I + + + +KLF+ +E +F + + L+K+ + ++ S ++ L+ M+
Sbjct: 215 LNGIIEEDISGLTVIKLFTREEKEME--KFDRVNESLRKVGTKAQIFSG--VLPPLMNMV 270
Query: 278 LILG---TTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDG 334
LG +G +L K I+ +G +A G S + L IQ
Sbjct: 271 NNLGFALISGFGGWLALKDIITVGTIATFI-------GYSRQFTRPLNELSNQFNMIQMA 323
Query: 335 MNMLSKKYKIVD------NYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEK 388
+ + ++I+D + +A L G+I FKNV FSYD+K ++ +++ I+PG+K
Sbjct: 324 LASAERIFEILDLEEEKDDPDAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQK 383
Query: 389 IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR 448
+ LVG +G+GK+TI NLL+RFYD+ G+IL+DG +I + + SLR IG+V QDT L
Sbjct: 384 VALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFST 443
Query: 449 SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508
++++N+ YG P A++ E+ AAK +D FIK L + GY+ + ++G LS GQRQ
Sbjct: 444 TVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPE-----GYETVLTDNGEDLSQGQRQ 498
Query: 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDR 568
+AI R L N IL+LDEATS +D++ E +IQ +++ LM+GKT I IAHRL+TI D
Sbjct: 499 LLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADL 558
Query: 569 LIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
+IVL +G + E G H +L++K G Y L+ Q
Sbjct: 559 IIVLRDGEIVEMGKHDELIQKRGFYYELFTSQ 590
>pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure)
pdb|3NH9|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Atp Bound
Structure)
pdb|3NHA|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Mg Bound
Structure)
pdb|3NHB|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Adp Bound
Structure)
Length = 306
Score = 234 bits (597), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 125/266 (46%), Positives = 169/266 (63%), Gaps = 5/266 (1%)
Query: 336 NMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRS 395
++L ++ ++ D A L G+I F+NV FSY + ++S T+ PG+ + LVG S
Sbjct: 30 DLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPS 89
Query: 396 GAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNIL 455
GAGKSTI LL RFYDI G I IDGQ+IS V+Q SLR IG+V QDT L + +I DNI
Sbjct: 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIR 149
Query: 456 YGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515
YGR A E+ AA+ A I + + GY VGE G+KLSGG++QR+AIAR
Sbjct: 150 YGRVTAGNDEVEAAAQAAGIHDAIMAFPE-----GYRTQVGERGLKLSGGEKQRVAIART 204
Query: 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
ILK I+LLDEATSALD+ E AIQ SL + +T I +AHRLST+ D+++V+ +G
Sbjct: 205 ILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDG 264
Query: 576 CVAEEGSHLDLLKKNGLYSRLWRHQN 601
C+ E G H LL + G+Y+ +W+ Q
Sbjct: 265 CIVERGRHEALLSRGGVYADMWQLQQ 290
>pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae
pdb|3B5X|B Chain B, Crystal Structure Of Msba From Vibrio Cholerae
Length = 582
Score = 227 bits (578), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 176/569 (30%), Positives = 291/569 (51%), Gaps = 67/569 (11%)
Query: 66 LLSNIKPSLLWKNY----SSYILLLGFILISSTVFVGLQTLFKHQVLS---GNFPMLLRW 118
++S +KP LL + + S+++ +L F+++ GL LS GN M +R
Sbjct: 44 MISLLKP-LLDEGFGNAESNFLRILPFMILGLMFVRGLSGFASSYCLSWVSGNVVMQMRR 102
Query: 119 NFHRLILNQSINFFQEEFAGRIATKVM--------QTSIA----IRDIFVIIGDXXXXXX 166
++ + FF +E G + +++ TS A +R+ IIG
Sbjct: 103 RLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIG------- 155
Query: 167 XXXXXXXXXXXXFNVYMLFPFVIWISAYIYTLIYFIP-RLNKTAESQATARSLMTGRITD 225
+N + L +I ++ + I F+ R K + + TA G +T
Sbjct: 156 ------LLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTA----MGHVTS 205
Query: 226 AYANIMTVK--LFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTT 283
+ ++ + S+ G+E RF + + Q M+L+S+ I + ++ M+ L
Sbjct: 206 SAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMR-QQTMKLVSAQSIADPVIQMIASL--- 261
Query: 284 GCALF--LWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKK 341
ALF L+ + I A ++ + + +M + AL Q GM
Sbjct: 262 --ALFAVLFLASVDSIRAELTPGTFTVVFSAM-FGLMRPLKALTSVTSEFQRGMAACQTL 318
Query: 342 YKIVD--------NYNAKRLVVTNGKIFFKNVSFSYDQKH-LIINNLSLTIQPGEKIGLV 392
+ ++D Y A+R+ NG++ K+V+F+Y K ++++S +I G+ + LV
Sbjct: 319 FGLMDLETERDNGKYEAERV---NGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALV 375
Query: 393 GRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRD 452
GRSG+GKSTI NL RFYD+ G I +DG ++ + +LR +V+Q+ L + +I +
Sbjct: 376 GRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIAN 435
Query: 453 NILYG-RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511
NI Y + + ++ AA+ A A FI+++ +G D +GE+G LSGGQRQR+A
Sbjct: 436 NIAYAAEGEYTREQIEQAARQAHAMEFIENMP-----QGLDTVIGENGTSLSGGQRQRVA 490
Query: 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIV 571
IAR +L++AP+L+LDEATSALD+E+E AIQ +L L K KTV+ IAHRLSTI D ++V
Sbjct: 491 IARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILV 550
Query: 572 LDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
+D G + E G H DLL ++G Y++L R Q
Sbjct: 551 VDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
>pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|B Chain B, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|C Chain C, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|D Chain D, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|E Chain E, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|F Chain F, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|G Chain G, Crystal Structure Of Eschericia Coli Msba
pdb|3B5W|H Chain H, Crystal Structure Of Eschericia Coli Msba
Length = 582
Score = 224 bits (570), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 133/369 (36%), Positives = 218/369 (59%), Gaps = 17/369 (4%)
Query: 239 AGREANYARFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIG 298
G+E RF + ++ Q M+++S+ I + ++ ++ L A L+ +
Sbjct: 221 GGQEVETKRFDKVSNRMRL-QGMKMVSASSISDPIIQLIASLA---LAFVLYAASFPSVM 276
Query: 299 AVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYN----AKRLV 354
A +++ + + +M + +L Q GM + I+D+ KR++
Sbjct: 277 DSLTAGTITVVFSSMIA-LMRPLKSLTNVNAQFQRGMAACQTLFTILDSEQEKDEGKRVI 335
Query: 355 V-TNGKIFFKNVSFSYDQKHL-IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI 412
G + F+NV+F+Y + + + N++L I G+ + LVGRSG+GKSTI +L+ RFYDI
Sbjct: 336 ERATGDVEFRNVTFTYPGRDVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDI 395
Query: 413 KYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDA-SECELFNAAK 471
GEIL+DG ++ + SLR Q+ +V+Q+ L + ++ +NI Y R + S ++ AA+
Sbjct: 396 DEGEILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEQYSREQIEEAAR 455
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
A A FI + + G D +GE+G+ LSGGQRQRIAIAR +L+++PIL+LDEATSA
Sbjct: 456 MAYAMDFINKMDN-----GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 510
Query: 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNG 591
LD+E+E AIQ +L L K +T + IAHRLSTI D ++V+++G + E G+H DLL+ G
Sbjct: 511 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEIVVVEDGVIVERGTHNDLLEHRG 570
Query: 592 LYSRLWRHQ 600
+Y++L + Q
Sbjct: 571 VYAQLHKMQ 579
>pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Y|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp
pdb|3B5Z|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B5Z|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Adp Vanadate
pdb|3B60|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|B Chain B, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|C Chain C, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
pdb|3B60|D Chain D, Crystal Structure Of Msba From Salmonella Typhimurium With
Amppnp, Higher Resolution Form
Length = 582
Score = 220 bits (560), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 117/276 (42%), Positives = 181/276 (65%), Gaps = 12/276 (4%)
Query: 332 QDGMNMLSKKYKIVDNYN----AKRLV-VTNGKIFFKNVSFSYDQKHL-IINNLSLTIQP 385
Q GM + I+D+ KR++ G + F+NV+F+Y + + + N++L I
Sbjct: 309 QRGMAACQTLFAILDSEQEKDEGKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPA 368
Query: 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSL 445
G+ + LVGRSG+GKSTI +L+ RFYDI G IL+DG ++ + SLR Q+ +V+Q+ L
Sbjct: 369 GKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHL 428
Query: 446 LHRSIRDNILYGRPDA-SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504
+ ++ +NI Y R + S ++ AA+ A A FI + + G D +GE+G+ LSG
Sbjct: 429 FNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN-----GLDTIIGENGVLLSG 483
Query: 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS 564
GQRQRIAIAR +L+++PIL+LDEATSALD+E+E AIQ +L L K +T + IAHRLSTI
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 565 AMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
D ++V+++G + E G+H +LL ++G+Y++L + Q
Sbjct: 544 QADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
>pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli
Length = 241
Score = 211 bits (537), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 117/244 (47%), Positives = 164/244 (67%), Gaps = 7/244 (2%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I F+N+ F Y +I++N++L+I+ GE IG+VGRSG+GKST+ L+ RFY + G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
IDG +++ LR Q+G+V QD LL+RSI DNI P S ++ AAK A A F
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I L R+GY+ VGE G LSGGQRQRIAIAR ++ N IL+ DEATSALD E+E
Sbjct: 122 ISEL-----REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSRLW 597
I ++++ + KG+TVI IAHRLST+ DR+IV++ G + E+G H +LL + LYS L+
Sbjct: 177 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
Query: 598 RHQN 601
+ Q+
Sbjct: 237 QLQS 240
>pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp
Bound State
Length = 247
Score = 211 bits (537), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 117/244 (47%), Positives = 164/244 (67%), Gaps = 7/244 (2%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I F+N+ F Y +I++N++L+I+ GE IG+VGRSG+GKST+ L+ RFY + G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
IDG +++ LR Q+G+V QD LL+RSI DNI P S ++ AAK A A F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I L R+GY+ VGE G LSGGQRQRIAIAR ++ N IL+ DEATSALD E+E
Sbjct: 128 ISEL-----REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSRLW 597
I ++++ + KG+TVI IAHRLST+ DR+IV++ G + E+G H +LL + LYS L+
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Query: 598 RHQN 601
+ Q+
Sbjct: 243 QLQS 246
>pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex
With Tnp-Adp
Length = 243
Score = 211 bits (536), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 117/244 (47%), Positives = 164/244 (67%), Gaps = 7/244 (2%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I F+N+ F Y +I++N++L+I+ GE IG+VGRSG+GKST+ L+ RFY + G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 63
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
IDG +++ LR Q+G+V QD LL+RSI DNI P S ++ AAK A A F
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I L R+GY+ VGE G LSGGQRQRIAIAR ++ N IL+ DEATSALD E+E
Sbjct: 124 ISEL-----REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSRLW 597
I ++++ + KG+TVI IAHRLST+ DR+IV++ G + E+G H +LL + LYS L+
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
Query: 598 RHQN 601
+ Q+
Sbjct: 239 QLQS 242
>pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In
Complex With Adp
pdb|2FGK|A Chain A, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|B Chain B, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|C Chain C, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
pdb|2FGK|D Chain D, Crystal Structure Of The Abc-Cassette E631q Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 210 bits (534), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 164/244 (67%), Gaps = 7/244 (2%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I F+N+ F Y +I++N++L+I+ GE IG+VGRSG+GKST+ L+ RFY + G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
IDG +++ LR Q+G+V QD LL+RSI DNI P S ++ AAK A A F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I L R+GY+ VGE G LSGGQRQRIAIAR ++ N IL+ D+ATSALD E+E
Sbjct: 128 ISEL-----REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDQATSALDYESEH 182
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSRLW 597
I ++++ + KG+TVI IAHRLST+ DR+IV++ G + E+G H +LL + LYS L+
Sbjct: 183 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Query: 598 RHQN 601
+ Q+
Sbjct: 243 QLQS 246
>pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated
Abc-atpase In Complex With Tnp-adp
Length = 243
Score = 209 bits (533), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 164/244 (67%), Gaps = 7/244 (2%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I F+N+ F Y +I++N++L+I+ GE IG+VGR+G+GKST+ L+ RFY + G++L
Sbjct: 4 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRAGSGKSTLTKLIQRFYIPENGQVL 63
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
IDG +++ LR Q+G+V QD LL+RSI DNI P S ++ AAK A A F
Sbjct: 64 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 123
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I L R+GY+ VGE G LSGGQRQRIAIAR ++ N IL+ DEATSALD E+E
Sbjct: 124 ISEL-----REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 178
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSRLW 597
I ++++ + KG+TVI IAHRLST+ DR+IV++ G + E+G H +LL + LYS L+
Sbjct: 179 VIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 238
Query: 598 RHQN 601
+ Q+
Sbjct: 239 QLQS 242
>pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|B Chain B, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|C Chain C, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
pdb|2GHI|D Chain D, Crystal Structure Of Plasmodium Yoelii Multidrug
Resistance Protein 2
Length = 260
Score = 208 bits (529), Expect = 9e-54, Method: Compositional matrix adjust.
Identities = 113/244 (46%), Positives = 167/244 (68%), Gaps = 8/244 (3%)
Query: 360 IFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
I F +V+FSY ++ H + +++ I G LVG +G+GKSTI LL RFYD + G+I
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDAE-GDI 76
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI 477
I G+N++ ++ S+R IG+V QDT L + +I+ NILYG+ DA++ E+ A K A+
Sbjct: 77 KIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYD 136
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
FI++L K +D VG G+KLSGG+RQRIAIAR +LK+ I++ DEATS+LDS+ E
Sbjct: 137 FIEALP-----KKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTE 191
Query: 538 IAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLW 597
QK++ +L K +T+I IAHRLSTIS+ + +I+L+ G + E+G+H DLLK NG Y+ +W
Sbjct: 192 YLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAEMW 251
Query: 598 RHQN 601
Q+
Sbjct: 252 NMQS 255
>pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter
Length = 1321
Score = 207 bits (528), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 109/247 (44%), Positives = 159/247 (64%), Gaps = 9/247 (3%)
Query: 358 GKIFFKNVSFSYDQKHLI--INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
GK+ FKNV F+Y ++ I + LS +++PG+ + LVG SG GKST+ LL RFYD G
Sbjct: 1075 GKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGG 1134
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDAS--ECELFNAAKCA 473
EI IDG I ++ E R QI +V+Q+ +L SI +NI+YG +S ++ AA+ A
Sbjct: 1135 EIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLA 1194
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
FI L + G++ VG+ G +LSGGQ+QRIAIAR +++N ILLLDEATSALD
Sbjct: 1195 NIHNFIAELPE-----GFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALD 1249
Query: 534 SEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLY 593
+E+E +Q++L +G+T I IAHRL+T+ D + V+ NG + E+G+H L+ + G Y
Sbjct: 1250 TESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSEKGAY 1309
Query: 594 SRLWRHQ 600
+L + Q
Sbjct: 1310 YKLTQKQ 1316
Score = 200 bits (509), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 109/245 (44%), Positives = 158/245 (64%), Gaps = 7/245 (2%)
Query: 358 GKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
G I +NV F+Y + I+ ++L + G+ + LVG SG GKSTI +LLLR+YD+ G
Sbjct: 414 GDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKG 473
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
+I IDG ++ +++ E LR+ + +V+Q+ +L + +I +NI G+ + E+ A K A A
Sbjct: 474 KITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANA 533
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ FIK+L + GY+ VG+ G +LSGGQ+QRIAIAR +++N ILLLDEATSALD+E
Sbjct: 534 EKFIKTLPN-----GYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAE 588
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSR 595
+E +Q++L KG+T I IAHRLSTI D +I NG V E G H L+ + GLY
Sbjct: 589 SEGIVQQALDKAAKGRTTIIIAHRLSTIRNADLIISCKNGQVVEVGDHRALMAQQGLYYD 648
Query: 596 LWRHQ 600
L Q
Sbjct: 649 LVTAQ 653
>pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|B Chain B, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|C Chain C, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
pdb|1XEF|D Chain D, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF
HLYB-Nbd
Length = 241
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 163/244 (66%), Gaps = 7/244 (2%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I F+N+ F Y +I++N++L+I+ GE IG+VGRSG+GKST+ L+ RFY + G++L
Sbjct: 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 61
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
IDG +++ LR Q+G+V QD LL+RSI DNI P S ++ AAK A A F
Sbjct: 62 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 121
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I L R+GY+ VGE G LSGGQRQRIAIAR ++ N IL+ DEATSALD E+E
Sbjct: 122 ISEL-----REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSRLW 597
I ++++ + KG+TVI IA RLST+ DR+IV++ G + E+G H +LL + LYS L+
Sbjct: 177 VIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 236
Query: 598 RHQN 601
+ Q+
Sbjct: 237 QLQS 240
>pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The
Abc-Transporter Hlyb In Complex With Adp
pdb|2FGJ|A Chain A, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|B Chain B, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|C Chain C, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
pdb|2FGJ|D Chain D, Crystal Structure Of The Abc-Cassette H662a Mutant Of Hlyb
With Bound Atp
Length = 247
Score = 207 bits (527), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 116/244 (47%), Positives = 163/244 (66%), Gaps = 7/244 (2%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I F+N+ F Y +I++N++L+I+ GE IG+VGRSG+GKST+ L+ RFY + G++L
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVL 67
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
IDG +++ LR Q+G+V QD LL+RSI DNI P S ++ AAK A A F
Sbjct: 68 IDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDF 127
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I L R+GY+ VGE G LSGGQRQRIAIAR ++ N IL+ DEATSALD E+E
Sbjct: 128 ISEL-----REGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 182
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSRLW 597
I ++++ + KG+TVI IA RLST+ DR+IV++ G + E+G H +LL + LYS L+
Sbjct: 183 VIMRNMHKICKGRTVIIIAARLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLY 242
Query: 598 RHQN 601
+ Q+
Sbjct: 243 QLQS 246
>pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|B Chain B, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|C Chain C, Crystal Structure Of Lmra Atp-Binding Domain
pdb|1MV5|D Chain D, Crystal Structure Of Lmra Atp-Binding Domain
Length = 243
Score = 202 bits (514), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 105/239 (43%), Positives = 155/239 (64%), Gaps = 6/239 (2%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
++V F+YD I+ ++S QP I G SG GKSTI +LL RFY GEI IDGQ
Sbjct: 5 RHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 423 NISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG-RPDASECELFNAAKCAEADIFIKS 481
I N+S E+ R QIG V+QD++++ +IR+N+ YG D ++ +L+ A A F+++
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
+ D+ + VGE G+K+SGGQRQR+AIAR L+N IL+LDEAT++LDSE+E +Q
Sbjct: 125 MPDQ-----LNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 542 KSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
K+L +LMKG+T + IAHRLSTI D++ ++ G + G H +L+ + LY++ Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVSEQ 238
>pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10
pdb|4AYX|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (Rod Form B)
pdb|3ZDQ|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (nucleotide-free Form)
Length = 595
Score = 201 bits (510), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 117/251 (46%), Positives = 156/251 (62%), Gaps = 11/251 (4%)
Query: 357 NGKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
G + FKNV F+Y + I + SL+I G LVG SG+GKST+ +LLLR YD
Sbjct: 339 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 398
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASEC---ELFNAAK 471
G I +DG +I ++ LR +IG V+Q+ L SI +NI YG D S E+ A+
Sbjct: 399 GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAE 458
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
A A FI++ +G++ VGE G+ LSGGQ+QRIAIAR +LKN ILLLDEATSA
Sbjct: 459 VANAVAFIRNFP-----QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSA 513
Query: 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-N 590
LD+E E +Q++L LM G+TV+ IAHRLSTI + + VLD G + E G H +LL K N
Sbjct: 514 LDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPN 573
Query: 591 GLYSRLWRHQN 601
G+Y +L Q+
Sbjct: 574 GIYRKLMNKQS 584
>pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G5U|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 199 bits (506), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 152/242 (62%), Gaps = 7/242 (2%)
Query: 357 NGKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
G + FKN+ FSY + I+ L+L ++ G+ + LVG SG GKST L+ R YD
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAE 474
G + IDGQ+I ++ LRE IG+V+Q+ L +I +NI YGR D + E+ A K A
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
A FI L + +D VGE G +LSGGQ+QRIAIAR +++N ILLLDEATSALD+
Sbjct: 505 AYDFIMKLPHQ-----FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYS 594
E+E +Q +L +G+T I IAHRLST+ D + D G + E+G+H +L+++ G+Y
Sbjct: 560 ESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF 619
Query: 595 RL 596
+L
Sbjct: 620 KL 621
Score = 195 bits (496), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 160/260 (61%), Gaps = 11/260 (4%)
Query: 340 KKYKIVDNYNAKRLV--VTNGKIFFKNVSFSYDQKHLI--INNLSLTIQPGEKIGLVGRS 395
+K +D+Y+ + L + G + F V F+Y + I + LSL ++ G+ + LVG S
Sbjct: 1009 EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSS 1068
Query: 396 GAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNIL 455
G GKST+ LL RFYD G + +DG+ I ++ + LR Q+G+V+Q+ L SI +NI
Sbjct: 1069 GCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128
Query: 456 YGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513
YG S E+ AAK A FI SL D+ Y+ VG+ G +LSGGQ+QRIAIA
Sbjct: 1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDK-----YNTRVGDKGTQLSGGQKQRIAIA 1183
Query: 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLD 573
R +++ ILLLDEATSALD+E+E +Q++L +G+T I IAHRLSTI D ++V+
Sbjct: 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQ 1243
Query: 574 NGCVAEEGSHLDLLKKNGLY 593
NG V E G+H LL + G+Y
Sbjct: 1244 NGKVKEHGTHQQLLAQKGIY 1263
>pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G60|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
pdb|3G61|B Chain B, Structure Of P-Glycoprotein Reveals A Molecular Basis For
Poly-Specific Drug Binding
Length = 1284
Score = 199 bits (505), Expect = 4e-51, Method: Compositional matrix adjust.
Identities = 107/242 (44%), Positives = 152/242 (62%), Gaps = 7/242 (2%)
Query: 357 NGKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
G + FKN+ FSY + I+ L+L ++ G+ + LVG SG GKST L+ R YD
Sbjct: 385 QGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLD 444
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAE 474
G + IDGQ+I ++ LRE IG+V+Q+ L +I +NI YGR D + E+ A K A
Sbjct: 445 GMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEAN 504
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
A FI L + +D VGE G +LSGGQ+QRIAIAR +++N ILLLDEATSALD+
Sbjct: 505 AYDFIMKLPHQ-----FDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDT 559
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYS 594
E+E +Q +L +G+T I IAHRLST+ D + D G + E+G+H +L+++ G+Y
Sbjct: 560 ESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYF 619
Query: 595 RL 596
+L
Sbjct: 620 KL 621
Score = 195 bits (495), Expect = 6e-50, Method: Compositional matrix adjust.
Identities = 112/260 (43%), Positives = 160/260 (61%), Gaps = 11/260 (4%)
Query: 340 KKYKIVDNYNAKRLV--VTNGKIFFKNVSFSYDQKHLI--INNLSLTIQPGEKIGLVGRS 395
+K +D+Y+ + L + G + F V F+Y + I + LSL ++ G+ + LVG S
Sbjct: 1009 EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSS 1068
Query: 396 GAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNIL 455
G GKST+ LL RFYD G + +DG+ I ++ + LR Q+G+V+Q+ L SI +NI
Sbjct: 1069 GCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIA 1128
Query: 456 YGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513
YG S E+ AAK A FI SL D+ Y+ VG+ G +LSGGQ+QRIAIA
Sbjct: 1129 YGDNSRVVSYEEIVRAAKEANIHQFIDSLPDK-----YNTRVGDKGTQLSGGQKQRIAIA 1183
Query: 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLD 573
R +++ ILLLDEATSALD+E+E +Q++L +G+T I IAHRLSTI D ++V+
Sbjct: 1184 RALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQ 1243
Query: 574 NGCVAEEGSHLDLLKKNGLY 593
NG V E G+H LL + G+Y
Sbjct: 1244 NGKVKEHGTHQQLLAQKGIY 1263
>pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter,
Abcb10 (plate Form)
Length = 619
Score = 197 bits (502), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 116/251 (46%), Positives = 155/251 (61%), Gaps = 11/251 (4%)
Query: 357 NGKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
G + FKNV F+Y + I + SL+I G LVG SG+GKST+ +LLLR YD
Sbjct: 370 QGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPAS 429
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASEC---ELFNAAK 471
G I +DG +I ++ LR +IG V+Q+ L SI +NI YG D S E+ A+
Sbjct: 430 GTISLDGHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAE 489
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
A A FI++ +G++ VGE G+ LSGGQ+QRIAIAR +LKN ILLLDEATSA
Sbjct: 490 VANAVAFIRNFP-----QGFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSA 544
Query: 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLL-KKN 590
LD+E E +Q++L LM G+TV+ IAH LSTI + + VLD G + E G H +LL K N
Sbjct: 545 LDAENEYLVQEALDRLMDGRTVLVIAHHLSTIKNANMVAVLDQGKITEYGKHEELLSKPN 604
Query: 591 GLYSRLWRHQN 601
G+Y +L Q+
Sbjct: 605 GIYRKLMNKQS 615
>pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In
Its Inward- Facing Conformation
Length = 587
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 107/358 (29%), Positives = 189/358 (52%), Gaps = 14/358 (3%)
Query: 255 KKIYQQMR--LISSFEIINHLLAMLLILGTTGCALFLWTKGIL------GIGAVAAATAM 306
+K + +R +IS+F +I L + + + G LW G+L IG++ A T
Sbjct: 229 RKANESLRRSIISAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNY 288
Query: 307 SLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVS 366
+++ + + + + + + + +L++K I + NA L G + F+NV
Sbjct: 289 LMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIEEADNALALPNVEGSVSFENVE 348
Query: 367 FSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425
F Y + +++ ++ +++PG + ++G +G+GKST+ NL+ R D + G + +D ++
Sbjct: 349 FRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVR 408
Query: 426 NVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDE 485
V + LR I V Q+T L +I++N+ +GR DA++ E+ AAK A+ FI SL +
Sbjct: 409 TVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPE- 467
Query: 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
GYD+ V G SGGQ+QR++IAR ++K +L+LD+ TS++D E I L
Sbjct: 468 ----GYDSRVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLK 523
Query: 546 NLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQNKN 603
KG T I ++ T D+++VL G VA G+H +LL+ Y ++ Q N
Sbjct: 524 RYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHKELLEHCKPYREIYESQFGN 581
>pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human
Tap1
Length = 260
Score = 157 bits (397), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 85/242 (35%), Positives = 139/242 (57%), Gaps = 10/242 (4%)
Query: 357 NGKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
G + F++VSF+Y + L++ L+ T++PGE LVG +G+GKST+ LL Y
Sbjct: 12 EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTG 71
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC-A 473
G++L+DG+ + L Q+ V Q+ + RS+++NI YG E AA +
Sbjct: 72 GQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKS 131
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
A FI L +GYD V E G +LSGGQRQ +A+AR +++ +L+LD+ATSALD
Sbjct: 132 GAHSFISGLP-----QGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALD 186
Query: 534 SEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNG 591
+ +++ +++ LY + ++V+ I LS + D ++ L+ G + E G+H L++K G
Sbjct: 187 ANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKKG 246
Query: 592 LY 593
Y
Sbjct: 247 CY 248
>pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|B Chain B, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|C Chain C, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
pdb|2IXF|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(D645q, Q678h Mutant)
Length = 271
Score = 152 bits (385), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 88/241 (36%), Positives = 135/241 (56%), Gaps = 10/241 (4%)
Query: 358 GKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
G + F++VSF+Y ++ L+ T+ PG+ LVG +G+GKST+ LL Y G
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNA-AKCAE 474
++L+DG+ + L Q+ V Q+ L RS R+NI YG E A A +
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
A FI +GYD VGE G +LSGGQRQ +A+AR +++ +L+LD+ATSALD+
Sbjct: 135 AHDFISGFP-----QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDQATSALDA 189
Query: 535 EAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGL 592
++ +Q+ LY + +TV+ I H+LS ++ L G V E+G+HL L+++ G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITHQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGC 249
Query: 593 Y 593
Y
Sbjct: 250 Y 250
>pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
pdb|2IXE|D Chain D, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(d645n Mutant)
Length = 271
Score = 149 bits (375), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 87/241 (36%), Positives = 133/241 (55%), Gaps = 10/241 (4%)
Query: 358 GKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
G + F++VSF+Y ++ L+ T+ PG+ LVG +G+GKST+ LL Y G
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNA-AKCAE 474
++L+DG+ + L Q+ V Q+ L RS R+NI YG E A A +
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
A FI +GYD VGE G +LSGGQRQ +A+AR +++ +L+LD ATSALD+
Sbjct: 135 AHDFISGFP-----QGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 535 EAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGL 592
++ +Q+ LY + +TV+ I +LS ++ L G V E+G+HL L+++ G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGC 249
Query: 593 Y 593
Y
Sbjct: 250 Y 250
>pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp
(S621a, G622v, D645n Mutant)
Length = 271
Score = 144 bits (362), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 85/241 (35%), Positives = 132/241 (54%), Gaps = 10/241 (4%)
Query: 358 GKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
G + F++VSF+Y ++ L+ T+ PG+ LVG +G+GKST+ LL Y G
Sbjct: 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGG 74
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNA-AKCAE 474
++L+DG+ + L Q+ V Q+ L RS R+NI YG E A A +
Sbjct: 75 KVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESG 134
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
A FI +GYD VGE G +L+ GQRQ +A+AR +++ +L+LD ATSALD+
Sbjct: 135 AHDFISGFP-----QGYDTEVGETGNQLAVGQRQAVALARALIRKPRLLILDNATSALDA 189
Query: 535 EAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGL 592
++ +Q+ LY + +TV+ I +LS ++ L G V E+G+HL L+++ G
Sbjct: 190 GNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGC 249
Query: 593 Y 593
Y
Sbjct: 250 Y 250
>pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1
Nucleotide Binding Domain 1
Length = 237
Score = 99.8 bits (247), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/245 (28%), Positives = 124/245 (50%), Gaps = 27/245 (11%)
Query: 360 IFFKNVSFSYDQKHL-IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I +N +F++ + +N ++ +I G + +VG+ G GKS++ + LL D G +
Sbjct: 4 ITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVA 63
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNA--AKCAEAD 476
I G + V Q + + S+R+NIL+G C+L +A
Sbjct: 64 IKGS-------------VAYVPQQAWIQNDSLRENILFG------CQLEEPYYRSVIQAC 104
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ L E G +GE G+ LSGGQ+QR+++AR + NA I L D+ SA+D+
Sbjct: 105 ALLPDL--EILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHV 162
Query: 537 EIAIQKSL---YNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLY 593
I +++ ++K KT I + H +S + +D +IV+ G ++E GS+ +LL ++G +
Sbjct: 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAF 222
Query: 594 SRLWR 598
+ R
Sbjct: 223 AEFLR 227
>pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|B Chain B, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|C Chain C, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
pdb|3GD7|D Chain D, Crystal Structure Of Human Nbd2 Complexed With N6-
Phenylethyl-Atp (P-Atp)
Length = 390
Score = 97.1 bits (240), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/248 (28%), Positives = 138/248 (55%), Gaps = 14/248 (5%)
Query: 344 IVDNYNAKR--LVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKS 400
+++N + K+ + + G++ K+++ Y + + I+ N+S +I PG+++GL+GR+G+GKS
Sbjct: 2 LIENSHVKKDDIWPSGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKS 61
Query: 401 TINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD 460
T+ + LR + + GEI IDG + +++ E R+ G++ Q + + R N+ P+
Sbjct: 62 TLLSAFLRLLNTE-GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNL---DPN 117
Query: 461 A--SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518
A S+ E++ A ++ ++S+ ++ K D + + G LS G +Q + +AR +L
Sbjct: 118 AAHSDQEIWKVAD----EVGLRSVIEQFPGK-LDFVLVDGGCVLSHGHKQLMCLARSVLS 172
Query: 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVA 578
A ILLLDE ++ LD I+++L TVI R+ + D+ +V++ V
Sbjct: 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVR 232
Query: 579 EEGSHLDL 586
+ S L+L
Sbjct: 233 QYDSILEL 240
>pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|D Chain D, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|G Chain G, Crystal Structure Of Methionine Importer Metni
pdb|3DHW|H Chain H, Crystal Structure Of Methionine Importer Metni
Length = 343
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 78/221 (35%), Positives = 118/221 (53%), Gaps = 31/221 (14%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTI---NNLLLRFYDIKYGEILIDGQNISNVSQESL 432
+NN+SL + G+ G++G SGAGKST+ NLL R + G +L+DGQ ++ +S+ L
Sbjct: 21 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESEL 77
Query: 433 ---REQIGMVTQDTSLLH-RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGR 488
R QIGM+ Q +LL R++ N+ A EL N K D + +T+
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNV------ALPLELDNTPK----DEVKRRVTELLSL 127
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
G + LSGGQ+QR+AIAR + N +LL DEATSALD A +S+ L+
Sbjct: 128 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDP----ATTRSILELL 183
Query: 549 K------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
K G T++ I H + + + D + V+ NG + E+ +
Sbjct: 184 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 224
>pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUI|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Native Crystal Form
pdb|3TUZ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|G Chain G, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
pdb|3TUZ|H Chain H, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Cy5 Semet Soak Crystal Form
Length = 366
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 77/221 (34%), Positives = 118/221 (53%), Gaps = 31/221 (14%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTI---NNLLLRFYDIKYGEILIDGQNISNVSQESL 432
+NN+SL + G+ G++G SGAGKST+ NLL R + G +L+DGQ ++ +S+ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESEL 100
Query: 433 ---REQIGMVTQDTSLLH-RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGR 488
R QIGM+ Q +LL R++ N+ A EL N K D + +T+
Sbjct: 101 TKARRQIGMIFQHFNLLSSRTVFGNV------ALPLELDNTPK----DEVKRRVTELLSL 150
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
G + LSGGQ+QR+AIAR + N +LL D+ATSALD A +S+ L+
Sbjct: 151 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP----ATTRSILELL 206
Query: 549 K------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
K G T++ I H + + + D + V+ NG + E+ +
Sbjct: 207 KDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
>pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+
pdb|3C41|K Chain K, Abc Protein Artp In Complex With Amp-PnpMG2+
Length = 242
Score = 94.4 bits (233), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 121/238 (50%), Gaps = 26/238 (10%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS--NVSQESL 432
++ +++ I+ GE + ++G SG+GKST L D GEI+IDG N+ + + +
Sbjct: 18 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 77
Query: 433 REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNA-AKCAEADIFIKSLTDEHGRKG 490
RE++GMV Q +L H ++ +NI + A AK E L D+ G K
Sbjct: 78 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME-------LLDKVGLKD 130
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE--AEI-AIQKSLYNL 547
AH + LSGGQ QR+AIAR + I+L DE TSALD E E+ ++ K L N
Sbjct: 131 K-AHA--YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN- 186
Query: 548 MKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQNKNF 604
+G T++ + H + + DR++ +D G + EEG K L+ R + K F
Sbjct: 187 -EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG------KPEDLFDRPQHERTKAF 237
>pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLJ|B Chain B, Abc Protein Artp In Complex With AdpMG2+
pdb|2OLK|A Chain A, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|B Chain B, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|C Chain C, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OLK|D Chain D, Abc Protein Artp In Complex With Adp-Beta-S
pdb|2OUK|A Chain A, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|B Chain B, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|C Chain C, Abc Protein Artp In Complex With Sulphate
pdb|2OUK|D Chain D, Abc Protein Artp In Complex With Sulphate
pdb|2Q0H|A Chain A, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|2Q0H|B Chain B, Abc Protein Artp In Complex With AdpMG2+, ATP-Gamma-S
Hydrolyzed
pdb|3C4J|A Chain A, Abc Protein Artp In Complex With Atp-Gamma-S
pdb|3C4J|B Chain B, Abc Protein Artp In Complex With Atp-Gamma-S
Length = 263
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 79/238 (33%), Positives = 121/238 (50%), Gaps = 26/238 (10%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS--NVSQESL 432
++ +++ I+ GE + ++G SG+GKST L D GEI+IDG N+ + + +
Sbjct: 39 VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKV 98
Query: 433 REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNA-AKCAEADIFIKSLTDEHGRKG 490
RE++GMV Q +L H ++ +NI + A AK E L D+ G K
Sbjct: 99 REEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAME-------LLDKVGLKD 151
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE--AEI-AIQKSLYNL 547
AH + LSGGQ QR+AIAR + I+L DE TSALD E E+ ++ K L N
Sbjct: 152 K-AHA--YPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLAN- 207
Query: 548 MKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQNKNF 604
+G T++ + H + + DR++ +D G + EEG K L+ R + K F
Sbjct: 208 -EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG------KPEDLFDRPQHERTKAF 258
>pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
pdb|3TUJ|D Chain D, Inward Facing Conformations Of The Metni Methionine Abc
Transporter: Dm Crystal Form
Length = 366
Score = 89.7 bits (221), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 76/221 (34%), Positives = 116/221 (52%), Gaps = 31/221 (14%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTI---NNLLLRFYDIKYGEILIDGQNISNVSQESL 432
+NN+SL + G+ G++G SGAGKST+ NLL R + G +L+DGQ ++ +S+ L
Sbjct: 44 LNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE---GSVLVDGQELTTLSESEL 100
Query: 433 ---REQIGMVTQDTSLLH-RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGR 488
R QIG + Q +LL R++ N+ A EL N K D + +T+
Sbjct: 101 TKARRQIGXIFQHFNLLSSRTVFGNV------ALPLELDNTPK----DEVKRRVTELLSL 150
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
G + LSGGQ+QR+AIAR + N +LL D+ATSALD A +S+ L+
Sbjct: 151 VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALDP----ATTRSILELL 206
Query: 549 K------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
K G T++ I H + + D + V+ NG + E+ +
Sbjct: 207 KDINRRLGLTILLITHEXDVVKRICDCVAVISNGELIEQDT 247
>pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans
pdb|3D31|B Chain B, Modbc From Methanosarcina Acetivorans
Length = 348
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 70/231 (30%), Positives = 122/231 (52%), Gaps = 25/231 (10%)
Query: 366 SFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425
S S K+ ++NLSL ++ GE ++G +GAGK+ L+ F+ G IL+DG++++
Sbjct: 6 SLSRKWKNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVT 65
Query: 426 NVSQESLREQIGMVTQDTSLL-HRSIRDNILYG---RPDASECELFNAAKCAEADIFIKS 481
++S E + I V Q+ SL H +++ N+ +G + + + A+ D+ I+
Sbjct: 66 DLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTAR----DLKIEH 119
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
L D + + LSGG++QR+A+AR ++ N ILLLDE SALD + +
Sbjct: 120 LLD------------RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 542 KSLYNLMKGK--TVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKK 589
+ L L K TV+ I H + M DR+ V+ +G + + G ++ +K
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEK 218
>pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
pdb|1L2T|B Chain B, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter
Cassette
Length = 235
Score = 86.3 bits (212), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 74/243 (30%), Positives = 117/243 (48%), Gaps = 40/243 (16%)
Query: 360 IFFKNVSFSYDQKHLII---NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
I KNV+ +Y II N++L I+ GE + ++G SG+GKST+ N++ GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 417 ILIDGQNISNVSQESL----REQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC 472
+ ID +++ + L R++IG V Q +L+ L A +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP------------------LLTALEN 103
Query: 473 AEADIFIK---SLTDEHGRK---------GYDAHVGEHGI-KLSGGQRQRIAIARVILKN 519
E + K +++ E RK + H +LSGGQ+QR+AIAR + N
Sbjct: 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163
Query: 520 APILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCV 577
PI+L D+ T ALDS+ I + L L + GKTV+ + H ++ +R+I L +G V
Sbjct: 164 PPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Query: 578 AEE 580
E
Sbjct: 224 ERE 226
>pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
pdb|3TIF|B Chain B, Dimeric Structure Of A Post-Hydrolysis State Of The
Atp-Binding Cassette Mj0796 Bound To Adp And Pi
Length = 235
Score = 84.7 bits (208), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 40/243 (16%)
Query: 360 IFFKNVSFSYDQKHLII---NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
+ KNV+ +Y II N++L I+ GE + ++G SG+GKST+ N++ GE
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 417 ILIDGQNISNVSQESL----REQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC 472
+ ID +++ + L R++IG V Q +L+ L A +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP------------------LLTALEN 103
Query: 473 AEADIFIK---SLTDEHGRK---------GYDAHVGEHGI-KLSGGQRQRIAIARVILKN 519
E + K +++ E RK + H +LSGGQ+QR+AIAR + N
Sbjct: 104 VELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANN 163
Query: 520 APILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCV 577
PI+L D+ T ALDS+ I + L L + GKTV+ + H ++ +R+I L +G V
Sbjct: 164 PPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Query: 578 AEE 580
E
Sbjct: 224 ERE 226
>pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette
Length = 235
Score = 84.3 bits (207), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 75/243 (30%), Positives = 114/243 (46%), Gaps = 40/243 (16%)
Query: 360 IFFKNVSFSYDQKHLII---NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
I KNV+ +Y II N++L I+ GE + + G SG+GKST N++ GE
Sbjct: 2 IKLKNVTKTYKXGEEIIYALKNVNLNIKEGEFVSIXGPSGSGKSTXLNIIGCLDKPTEGE 61
Query: 417 ILIDGQNISNVSQESL----REQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC 472
+ ID +++ + L R++IG V Q +L+ L A +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP------------------LLTALEN 103
Query: 473 AEADIFIK---SLTDEHGRK---------GYDAHVGEHGI-KLSGGQRQRIAIARVILKN 519
E + K + + E RK + H +LSGGQ+QR+AIAR + N
Sbjct: 104 VELPLIFKYRGAXSGEERRKRALECLKXAELEERFANHKPNQLSGGQQQRVAIARALANN 163
Query: 520 APILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCV 577
PI+L DE T ALDS+ I + L L + GKTV+ + H ++ +R+I L +G V
Sbjct: 164 PPIILADEPTGALDSKTGEKIXQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEV 223
Query: 578 AEE 580
E
Sbjct: 224 ERE 226
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 83.6 bits (205), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/236 (25%), Positives = 118/236 (50%), Gaps = 16/236 (6%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F V Y + +S I+ GE +GL+G SG+GK+TI L+ G++ I
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWI 74
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIF 478
G+ ++++ + + +G+V Q+ +L H ++ DN+ +G + + A+ E F
Sbjct: 75 GGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRF 132
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
++ +++ +LSGGQ+QR+A+AR + +LL DE +A+D++
Sbjct: 133 MR----------LESYANRFPHELSGGQQQRVALARALAPRPQVLLFDEPFAAIDTQIRR 182
Query: 539 AIQ---KSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNG 591
++ + +++ M +V + + DR++VL G V + G+ ++ +K G
Sbjct: 183 ELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPG 238
>pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|B Chain B, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|C Chain C, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q12|D Chain D, Crystal Structure Of The Atp-bound E. Coli Malk
pdb|1Q1E|A Chain A, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|1Q1E|B Chain B, The Atpase Component Of E. Coli Maltose Transporter (Malk)
In The Nucleotide-Free Form
pdb|2AWN|A Chain A, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|B Chain B, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|C Chain C, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWN|D Chain D, Crystal Structure Of The Adp-Mg-Bound E. Coli Malk
(Crystallized With Atp-Mg)
pdb|2AWO|A Chain A, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|B Chain B, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|C Chain C, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|2AWO|D Chain D, Crystal Structure Of The Adp-mg-bound E. Coli Malk
(crystallized With Adp-mg)
pdb|3FH6|A Chain A, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|B Chain B, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|C Chain C, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3FH6|D Chain D, Crystal Structure Of The Resting State Maltose Transporter
From E. Coli
pdb|3PUY|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUY|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Amp-Pnp After Crystal
Soaking Of The Pretranslocation State
pdb|3PUZ|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PUZ|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Bound To Amp-Pnp
pdb|3PV0|A Chain A, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PV0|B Chain B, Crystal Structure Of A Pre-Translocation State Mbp-Maltose
Transporter Complex Without Nucleotide
pdb|3PUV|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUV|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Vo4
pdb|3PUW|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUW|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Alf4
pdb|3PUX|A Chain A, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3PUX|B Chain B, Crystal Structure Of An Outward-Facing Mbp-Maltose
Transporter Complex Bound To Adp-Bef3
pdb|3RLF|A Chain A, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
pdb|3RLF|B Chain B, Crystal Structure Of The Maltose-Binding ProteinMALTOSE
TRANSPORTER Complex In An Outward-Facing Conformation
Bound To Mgamppnp
Length = 381
Score = 82.8 bits (203), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 21/233 (9%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ +NV+ ++ + ++ +++L I GE + VG SG GKST+ ++ I G++ I
Sbjct: 4 VQLQNVTKAWGEV-VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG-RPDASECELFNAAKCAEADI 477
G+ N + + R +GMV Q +L H S+ +N+ +G + ++ E+ N A++
Sbjct: 63 -GEKRMNDTPPAER-GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 120
Query: 478 F-IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ L D + LSGGQRQR+AI R ++ + LLDE S LD+
Sbjct: 121 LQLAHLLDRKPKA------------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 537 EIAIQKSLYNLMK--GKTVIAIAH-RLSTISAMDRLIVLDNGCVAEEGSHLDL 586
+ ++ + L K G+T+I + H ++ ++ D+++VLD G VA+ G L+L
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|B Chain B, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|C Chain C, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
pdb|1Q1B|D Chain D, Crystal Structure Of E. Coli Malk In The Nucleotide-Free
Form
Length = 381
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 21/233 (9%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ +NV+ ++ + ++ +++L I GE + VG SG GKST+ ++ I G++ I
Sbjct: 4 VQLQNVTKAWGEV-VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
Query: 420 DGQNISNVSQESLREQIGMVTQDTSL-LHRSIRDNILYG-RPDASECELFNAAKCAEADI 477
G+ N + + R +GMV Q +L H S+ +N+ +G + ++ E+ N A++
Sbjct: 63 -GEKRMNDTPPAER-GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 120
Query: 478 F-IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ L D + LSGGQRQR+AI R ++ + LLDE S LD+
Sbjct: 121 LQLAHLLDRKPKA------------LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAAL 168
Query: 537 EIAIQKSLYNLMK--GKTVIAIAH-RLSTISAMDRLIVLDNGCVAEEGSHLDL 586
+ ++ + L K G+T+I + H ++ ++ D+++VLD G VA+ G L+L
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
pdb|2IT1|B Chain B, Structure Of Ph0203 Protein From Pyrococcus Horikoshii
Length = 362
Score = 82.4 bits (202), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 65/212 (30%), Positives = 112/212 (52%), Gaps = 18/212 (8%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+NN++L I+ GE + L+G SG+GKST+ + Y G+I D ++++ + +
Sbjct: 19 LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPKD--RN 76
Query: 436 IGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDE-HGRKGYDA 493
+G+V Q+ +L H ++ NI + EL A + E D ++ + H D
Sbjct: 77 VGLVFQNWALYPHMTVYKNIAF------PLELRKAPR-EEIDKKVREVAKMLH----IDK 125
Query: 494 HVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GK 551
+ + +LSGGQ+QR+AIAR ++K +LLLDE S LD+ + ++ L L K G
Sbjct: 126 LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGI 185
Query: 552 TVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
T + + H + AM DR+ V+ G + + G+
Sbjct: 186 TTVYVTHDQAEALAMADRIAVIREGEILQVGT 217
>pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter
pdb|2R6G|B Chain B, The Crystal Structure Of The E. Coli Maltose Transporter
Length = 381
Score = 81.3 bits (199), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 123/233 (52%), Gaps = 21/233 (9%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ +NV+ ++ + ++ +++L I GE + VG SG GKST+ ++ I G++ I
Sbjct: 4 VQLQNVTKAWGEV-VVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 62
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG-RPDASECELFNAAKCAEADI 477
G+ N + + R +GMV Q +L H S+ +N+ +G + ++ E+ N A++
Sbjct: 63 -GEKRMNDTPPAER-GVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEV 120
Query: 478 F-IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ L D + LSGGQRQR+AI R ++ + LLD+ S LD+
Sbjct: 121 LQLAHLLDRKPKA------------LSGGQRQRVAIGRTLVAEPSVFLLDQPLSNLDAAL 168
Query: 537 EIAIQKSLYNLMK--GKTVIAIAH-RLSTISAMDRLIVLDNGCVAEEGSHLDL 586
+ ++ + L K G+T+I + H ++ ++ D+++VLD G VA+ G L+L
Sbjct: 169 RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
pdb|2YZ2|B Chain B, Crystal Structure Of The Abc Transporter In The Cobalt
Transport System
Length = 266
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+ N+SL I GE + + G +G+GKST+ ++ + G++L DG+ +R
Sbjct: 23 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 79
Query: 436 IGMVTQ--DTSLLHRSIRDNILYG----RPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
IG+ Q + + D + + PD L A E
Sbjct: 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAM-------------EFVGL 126
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
+D+ LSGG+++R+AIA VI+ IL+LDE LD E + + + +
Sbjct: 127 DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 186
Query: 550 -GKTVIAIAHRLST-ISAMDRLIVLDNGCVAEEGSHLDLLKK 589
GKTVI I+H + T I+ +DR++VL+ G +G+ ++ L+K
Sbjct: 187 LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228
>pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|B Chain B, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 76.3 bits (186), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 62/222 (27%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+ N+SL I GE + + G +G+GKST+ ++ + G++L DG+ +R
Sbjct: 25 LENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGYE---IRRN 81
Query: 436 IGMVTQ--DTSLLHRSIRDNILYG----RPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
IG+ Q + + D + + PD L A E
Sbjct: 82 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAM-------------EFVGL 128
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
+D+ LSGG+++R+AIA VI+ IL+LDE LD E + + + +
Sbjct: 129 DFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKT 188
Query: 550 -GKTVIAIAHRLST-ISAMDRLIVLDNGCVAEEGSHLDLLKK 589
GKTVI I+H + T I+ +DR++VL+ G +G+ ++ L+K
Sbjct: 189 LGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 230
>pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
pdb|2PZG|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Monomer
Length = 241
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 62/252 (24%), Positives = 125/252 (49%), Gaps = 47/252 (18%)
Query: 336 NMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHL-IINNLSLTIQPGEKIGLVGR 394
++ ++YK ++ YN +T ++ +NV+ +++ ++ +++ I+ G+ + + G
Sbjct: 1 SLQKQEYKTLE-YN-----LTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGS 54
Query: 395 SGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI 454
+GAGK+++ +++ + G+I G+ I +Q + ++ +I++NI
Sbjct: 55 TGAGKTSLLMMIMGELEPSEGKIKHSGR-------------ISFCSQFSWIMPGTIKENI 101
Query: 455 LYG--------RPDASECELF-NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505
++G R C+L + +K AE D + +GE GI LSGG
Sbjct: 102 IFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV---------------LGEGGITLSGG 146
Query: 506 QRQRIAIARVILKNAPILLLDEATSALD--SEAEIAIQKSLYNLMKGKTVIAIAHRLSTI 563
QR RI++AR + K+A + LLD LD +E EI + + LM KT I + ++ +
Sbjct: 147 QRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-FESCVCKLMANKTRILVTSKMEHL 205
Query: 564 SAMDRLIVLDNG 575
D++++L G
Sbjct: 206 KKADKILILHEG 217
>pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXT|D Chain D, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|A Chain A, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|B Chain B, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXU|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|A Chain A, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|B Chain B, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
pdb|1OXV|D Chain D, Crystal Structure Of Glcv, The Abc-atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/239 (29%), Positives = 123/239 (51%), Gaps = 24/239 (10%)
Query: 359 KIFFKNVSFSYDQKHLI-INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
+I KNVS + + ++ ++N+++ I+ GE+ G++G SGAGK+T ++ GE+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 418 LIDGQNISN-----VSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC 472
D + +++ V E +IGMV Q +L Y A E F
Sbjct: 63 YFDDRLVASNGKLIVPPED--RKIGMVFQTWAL----------YPNLTAFENIAFPLTNM 110
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEH-GIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
+ I+ +E + HV H +LSGGQ+QR+A+AR ++K+ +LLLDE S
Sbjct: 111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGGQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 532 LDS---EAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDL 586
LD+ ++ A+ K + + + G T++ ++H + I A+ DR+ VL G + + G DL
Sbjct: 171 LDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of
Multisugar Transporter From Pyrococcus Horikoshii Ot3
Complexed With Atp
Length = 373
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 115/225 (51%), Gaps = 21/225 (9%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+N L+LTI+ GE + L+G SG GK+T ++ + G I ++++ + +
Sbjct: 28 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RN 85
Query: 436 IGMVTQDTSL-LHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD 492
I MV Q ++ H ++ +NI + + E+ + A + I+ L + Y
Sbjct: 86 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-----YP 140
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ---KSLYNLMK 549
A +LSGGQRQR+A+AR I+ +LL+DE S LD++ +A++ K L +K
Sbjct: 141 A-------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 193
Query: 550 GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL-LKKNGLY 593
T+ ++ ++ DR+ V++ G + + GS ++ L+ N ++
Sbjct: 194 VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 238
>pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
pdb|2PZE|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer
Length = 229
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 58/233 (24%), Positives = 115/233 (49%), Gaps = 41/233 (17%)
Query: 355 VTNGKIFFKNVSFSYDQKHL-IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413
+T ++ +NV+ +++ ++ +++ I+ G+ + + G +GAGK+++ +++ +
Sbjct: 2 LTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 414 YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG--------RPDASECE 465
G+I G+ I +Q + ++ +I++NI++G R C+
Sbjct: 62 EGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQ 108
Query: 466 LF-NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524
L + +K AE D + +GE GI LSGGQR RI++AR + K+A + L
Sbjct: 109 LEEDISKFAEKDNIV---------------LGEGGITLSGGQRARISLARAVYKDADLYL 153
Query: 525 LDEATSALD--SEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LD LD +E EI + + LM KT I + ++ + D++++L G
Sbjct: 154 LDSPFGYLDVLTEKEI-FESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 205
>pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|B Chain B, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|C Chain C, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
pdb|1R0Z|D Chain D, Phosphorylated Cystic Fibrosis Transmembrane Conductance
Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1)
With Atp
Length = 286
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 48/228 (21%)
Query: 364 NVSFSYDQKHL------IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
NVSFS HL ++ N++L I+ GE + + G +G+GK+++ L+L + G I
Sbjct: 40 NVSFS----HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG--------RPDASECELF-N 468
G+ + +Q + ++ +I++NI++G + C+L +
Sbjct: 96 KHSGR-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD 142
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
K AE D + +GE G+ LSGGQR RI++AR + K+A + LLD
Sbjct: 143 ITKFAEQDNTV---------------LGEGGVTLSGGQRARISLARAVYKDADLYLLDSP 187
Query: 529 TSALDSEAEIAI-QKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LD E + + + LM KT I + ++ + D++++L G
Sbjct: 188 FGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar
Transporter
Length = 372
Score = 72.0 bits (175), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 61/225 (27%), Positives = 115/225 (51%), Gaps = 21/225 (9%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+N L+LTI+ GE + L+G SG GK+T ++ + G I ++++ + +
Sbjct: 27 VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPKD--RN 84
Query: 436 IGMVTQDTSL-LHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD 492
I MV Q ++ H ++ +NI + + E+ + A + I+ L + Y
Sbjct: 85 ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEELLNR-----YP 139
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ---KSLYNLMK 549
A +LSGGQRQR+A+AR I+ +LL+DE S LD++ +A++ K L +K
Sbjct: 140 A-------QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLK 192
Query: 550 GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL-LKKNGLY 593
T+ ++ ++ DR+ V++ G + + GS ++ L+ N ++
Sbjct: 193 VTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVF 237
>pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations.
pdb|2BBT|B Chain B, Human Deltaf508 Nbd1 With Two Solublizing Mutations
Length = 290
Score = 72.0 bits (175), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 68/269 (25%), Positives = 125/269 (46%), Gaps = 50/269 (18%)
Query: 317 VMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLII 376
VM + A +E +G L +K K N N ++ + +FF N S ++
Sbjct: 6 VMENVTAFWE------EGFGELFEKAK--QNNNNRKTSNGDDSLFFSNFSL---LGTPVL 54
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436
+++ I+ G+ + + G +GAGK+++ +++ + G+I G+ I
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-------------I 101
Query: 437 GMVTQDTSLLHRSIRDNILYGRPDA-------SECELF-NAAKCAEADIFIKSLTDEHGR 488
+Q++ ++ +I++NI+ D C+L + +K AE D +
Sbjct: 102 SFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV--------- 152
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD--SEAEIAIQKSLYN 546
+GE GI LSGGQR RI++AR + K+A + LLD LD +E EI + +
Sbjct: 153 ------LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-FESCVCK 205
Query: 547 LMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LM KT I + ++ + D++++L G
Sbjct: 206 LMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|B Chain B, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|C Chain C, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1Q3H|D Chain D, Mouse Cftr Nbd1 With Amp.Pnp
pdb|1R0W|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0W|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) Apo
pdb|1R0X|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0X|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp
pdb|1R0Y|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|C Chain C, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R0Y|D Chain D, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Adp
pdb|1R10|A Chain A, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
pdb|1R10|B Chain B, Cystic Fibrosis Transmembrane Conductance Regulator (Cftr)
Nucleotide- Binding Domain One (Nbd1) With Atp, I4122
Space Group
Length = 286
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 108/228 (47%), Gaps = 48/228 (21%)
Query: 364 NVSFSYDQKHL------IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
NVSFS HL ++ N++L I+ GE + + G +G+GK+++ L+L + G I
Sbjct: 40 NVSFS----HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG--------RPDASECELF-N 468
G+ + +Q + ++ +I++NI++G + C+L +
Sbjct: 96 KHSGR-------------VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQD 142
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
K AE D + +GE G+ LSGGQR RI++AR + K+A + LLD
Sbjct: 143 ITKFAEQDNTV---------------LGEGGVTLSGGQRARISLARAVYKDADLYLLDSP 187
Query: 529 TSALDSEAEIAI-QKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LD E + + + LM KT I + ++ + D++++L G
Sbjct: 188 FGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant
pdb|1XFA|B Chain B, Structure Of Nbd1 From Murine Cftr- F508r Mutant
Length = 283
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 48/228 (21%)
Query: 364 NVSFSYDQKHL------IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
NVSFS HL ++ N++L I+ GE + + G +G+GK+++ L+L + G I
Sbjct: 40 NVSFS----HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG--------RPDASECELF-N 468
G+ + +Q + ++ +I++NI+ G + C+L +
Sbjct: 96 KHSGR-------------VSFCSQFSWIMPGTIKENIIRGVSYDEYRYKSVVKACQLQQD 142
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
K AE D + +GE G+ LSGGQR RI++AR + K+A + LLD
Sbjct: 143 ITKFAEQDNTV---------------LGEGGVTLSGGQRARISLARAVYKDADLYLLDSP 187
Query: 529 TSALDSEAEIAI-QKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LD E + + + LM KT I + ++ + D++++L G
Sbjct: 188 FGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|B Chain B, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|C Chain C, Structure Of Nbd1 From Murine Cftr- F508s Mutant
pdb|1XF9|D Chain D, Structure Of Nbd1 From Murine Cftr- F508s Mutant
Length = 283
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 107/228 (46%), Gaps = 48/228 (21%)
Query: 364 NVSFSYDQKHL------IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
NVSFS HL ++ N++L I+ GE + + G +G+GK+++ L+L + G I
Sbjct: 40 NVSFS----HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG--------RPDASECELF-N 468
G+ + +Q + ++ +I++NI+ G + C+L +
Sbjct: 96 KHSGR-------------VSFCSQFSWIMPGTIKENIISGVSYDEYRYKSVVKACQLQQD 142
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
K AE D + +GE G+ LSGGQR RI++AR + K+A + LLD
Sbjct: 143 ITKFAEQDNTV---------------LGEGGVTLSGGQRARISLARAVYKDADLYLLDSP 187
Query: 529 TSALDSEAEIAI-QKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LD E + + + LM KT I + ++ + D++++L G
Sbjct: 188 FGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 235
>pdb|1G29|1 Chain 1, Malk
pdb|1G29|2 Chain 2, Malk
Length = 372
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 57/222 (25%), Positives = 109/222 (49%), Gaps = 18/222 (8%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ----ES 431
+ +SL ++ GE + L+G SG GK+T ++ + G+I I + +++ +
Sbjct: 19 VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP 78
Query: 432 LREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
I MV Q +L H ++ DNI + +L + E D ++ + + G
Sbjct: 79 KDRDIAMVFQSYALYPHMTVYDNIAF------PLKLRKVPR-QEIDQRVREVAELLG--- 128
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK- 549
+ +LSGGQRQR+A+ R I++ + L+DE S LD++ + ++ L L +
Sbjct: 129 LTELLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQ 188
Query: 550 -GKTVIAIAH-RLSTISAMDRLIVLDNGCVAEEGSHLDLLKK 589
G T I + H ++ ++ DR+ V++ G + + GS ++ K
Sbjct: 189 LGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDK 230
>pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose
Abc Transporter From Sulfolobus Solfataricus
Length = 353
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/239 (29%), Positives = 122/239 (51%), Gaps = 24/239 (10%)
Query: 359 KIFFKNVSFSYDQKHLI-INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
+I KNVS + + ++ ++N+++ I+ GE+ G++G SGAGK+T ++ GE+
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 418 LIDGQNISN-----VSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC 472
D + +++ V E +IGMV Q +L Y A E F
Sbjct: 63 YFDDRLVASNGKLIVPPED--RKIGMVFQTWAL----------YPNLTAFENIAFPLTNM 110
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEH-GIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
+ I+ +E + HV H +LSG Q+QR+A+AR ++K+ +LLLDE S
Sbjct: 111 KMSKEEIRKRVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSN 170
Query: 532 LDS---EAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDL 586
LD+ ++ A+ K + + + G T++ ++H + I A+ DR+ VL G + + G DL
Sbjct: 171 LDARMRDSARALVKEVQSRL-GVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDL 228
>pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding
Protein
Length = 359
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 109/212 (51%), Gaps = 18/212 (8%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
++ +S ++ GE + L+G SG GK+T +L Y GEI D ++++ + +
Sbjct: 19 VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPKY--RE 76
Query: 436 IGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGY-DA 493
+GMV Q+ +L H ++ +NI + A + ++ ++ + + E RK D
Sbjct: 77 VGMVFQNYALYPHMTVFENIAFP---------LRARRISKDEVEKRVV--EIARKLLIDN 125
Query: 494 HVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GK 551
+ +LSGGQ+QR+A+AR ++K +LL DE S LD+ + ++ + +L + G
Sbjct: 126 LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGI 185
Query: 552 TVIAIAH-RLSTISAMDRLIVLDNGCVAEEGS 582
T + + H + ++ R+ V + G + + G+
Sbjct: 186 TSVYVTHDQAEAMTMASRIAVFNQGKLVQYGT 217
>pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp
pdb|4HLU|C Chain C, Structure Of The Ecfa-a' Heterodimer Bound To Adp
Length = 268
Score = 69.7 bits (169), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 121/235 (51%), Gaps = 18/235 (7%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+I +VSF Y+ + ++ +++ + G+ +VG++G+GK+T+ +L GEI
Sbjct: 11 RIELNSVSFRYNGDY-VLKDVNAEFETGKIYVVVGKNGSGKTTLLKILAGLL-AAAGEIF 68
Query: 419 IDGQNISNVSQESLREQIGMVTQDTS--LLHRSIRDNILYGRPDASECELFNAAKCAEAD 476
+DG S LR+ +G V Q+ S ++ ++ +++ + E+ + +E
Sbjct: 69 LDG---SPADPFLLRKNVGYVFQNPSSQIIGATVEEDVAFS------LEIMGLDE-SEMR 118
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
IK + + G G A + LSGGQ+QR+AIA ++ ++ L LDE S LD +
Sbjct: 119 KRIKKVLELVGLSGLAAA---DPLNLSGGQKQRLAIASMLARDTRFLALDEPVSMLDPPS 175
Query: 537 EIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKN 590
+ I + L +L +GK +I + H L + MD ++ + NG + GS + +++
Sbjct: 176 QREIFQVLESLKNEGKGIILVTHELEYLDDMDFILHISNGTIDFCGSWEEFVERE 230
>pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|B Chain B, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|F Chain F, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
pdb|2ONK|G Chain G, Abc Transporter Modbc In Complex With Its Binding Protein
Moda
Length = 240
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/216 (29%), Positives = 104/216 (48%), Gaps = 19/216 (8%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRS 449
L+G +GAGKS L+ GE+ ++G +I+ + E R IG V QD +L H S
Sbjct: 29 LLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQDYALFPHLS 86
Query: 450 IRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509
+ NI YG + E + + I L D RK +LSGG+RQR
Sbjct: 87 VYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLD---RKPA---------RLSGGERQR 134
Query: 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM- 566
+A+AR ++ +LLLDE SA+D + + + + L + + ++ + H L + +
Sbjct: 135 VALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLA 194
Query: 567 DRLIVLDNGCVAEEGSHLDLLK-KNGLYSRLWRHQN 601
D + V+ NG + E+G +L KNG + +N
Sbjct: 195 DEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARN 230
>pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|B Chain B, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|C Chain C, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|D Chain D, Crystal Structure Of Human F508a Nbd1 Domain With Atp
pdb|1XMI|E Chain E, Crystal Structure Of Human F508a Nbd1 Domain With Atp
Length = 291
Score = 69.3 bits (168), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/270 (25%), Positives = 124/270 (45%), Gaps = 51/270 (18%)
Query: 317 VMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLII 376
VM + A +E +G L +K K N N ++ + + F N S ++
Sbjct: 6 VMENVTAFWE------EGFGELFEKAK--QNNNNRKTSNGDDSLSFSNFSL---LGTPVL 54
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436
+++ I+ G+ + + G +GAGK+++ +++ + G+I G+ I
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-------------I 101
Query: 437 GMVTQDTSLLHRSIRDNILYG--------RPDASECELF-NAAKCAEADIFIKSLTDEHG 487
+Q + ++ +I++NI+ G R C+L + +K AE D +
Sbjct: 102 SFCSQFSWIMPGTIKENIIAGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV-------- 153
Query: 488 RKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD--SEAEIAIQKSLY 545
+GE GI LSGGQR RI++AR + K+A + LLD LD +E EI + +
Sbjct: 154 -------LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-FESCVC 205
Query: 546 NLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LM KT I + ++ + D++++L G
Sbjct: 206 KLMANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
pdb|2BBS|B Chain B, Human Deltaf508 Nbd1 With Three Solubilizing Mutations
Length = 290
Score = 68.6 bits (166), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 67/269 (24%), Positives = 124/269 (46%), Gaps = 50/269 (18%)
Query: 317 VMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLII 376
VM + A +E +G L +K K N N ++ + + F N S ++
Sbjct: 6 VMENVTAFWE------EGFGELFEKAK--QNNNNRKTSNGDDSLSFSNFSL---LGTPVL 54
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436
+++ I+ G+ + + G +GAGK+++ +++ + G+I G+ I
Sbjct: 55 KDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR-------------I 101
Query: 437 GMVTQDTSLLHRSIRDNILYGRPDA-------SECELF-NAAKCAEADIFIKSLTDEHGR 488
+Q++ ++ +I++NI+ D C+L + +K AE D +
Sbjct: 102 SFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV--------- 152
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD--SEAEIAIQKSLYN 546
+GE GI LSGGQR RI++AR + K+A + LLD LD +E EI + +
Sbjct: 153 ------LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI-FESCVCK 205
Query: 547 LMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LM KT I + ++ + D++++L G
Sbjct: 206 LMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|B Chain B, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|C Chain C, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
pdb|3SI7|D Chain D, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr
Protein, Deltaf508 Mutant
Length = 285
Score = 67.8 bits (164), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 47/227 (20%)
Query: 364 NVSFSYDQKHL------IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
NVSFS HL ++ N++L I+ GE + + G +G+GK+++ L+L + G I
Sbjct: 40 NVSFS----HLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGII 95
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDA-------SECELF-NA 469
G+ + +Q + ++ +I++NI+ D C+L +
Sbjct: 96 KHSGR-------------VSFCSQFSWIMPGTIKENIIGVSYDEYRYKSVVKACQLQQDI 142
Query: 470 AKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529
K AE D + +GE G+ LSGGQR RI++AR + K+A + LLD
Sbjct: 143 TKFAEQDNTV---------------LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF 187
Query: 530 SALDSEAEIAI-QKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LD E + + + LM KT I + ++ + D++++L G
Sbjct: 188 GYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQG 234
>pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
pdb|4G1U|D Chain D, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv
From Yersinia Pestis
Length = 266
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 116/233 (49%), Gaps = 24/233 (10%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430
Q+ +IN++SL I GE + ++G +GAGKST+ LL + +GE + GQN+++ +
Sbjct: 22 QQQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPK 81
Query: 431 SLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
+L ++ Q + L S+ + I GR + ++ +A + + TD
Sbjct: 82 ALARTRAVMRQYSELAFPFSVSEVIQMGRAP------YGGSQDRQALQQVMAQTDCLALA 135
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVIL---KNAPI---LLLDEATSALDSEAEIAIQKS 543
D V LSGG++QR+ +ARV+ + P L LDE TSALD + +
Sbjct: 136 QRDYRV------LSGGEQQRVQLARVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRL 189
Query: 544 LYNLMKGK--TVIAIAHRLSTISAM--DRLIVLDNGCVAEEGSHLDLLKKNGL 592
L L + + V + H L+ ++A+ DR+++L G + G+ ++L L
Sbjct: 190 LRQLTRQEPLAVCCVLHDLN-LAALYADRIMLLAQGKLVACGTPEEVLNAETL 241
>pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
pdb|2PZF|B Chain B, Minimal Human Cftr First Nucleotide Binding Domain As A
Head-To-Tail Dimer With Delta F508
Length = 228
Score = 67.0 bits (162), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/232 (24%), Positives = 113/232 (48%), Gaps = 40/232 (17%)
Query: 355 VTNGKIFFKNVSFSYDQKHL-IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413
+T ++ +NV+ +++ ++ +++ I+ G+ + + G +GAGK+++ +++ +
Sbjct: 2 LTTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPS 61
Query: 414 YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDA-------SECEL 466
G+I G+ I +Q + ++ +I++NI+ D C+L
Sbjct: 62 EGKIKHSGR-------------ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQL 108
Query: 467 F-NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL 525
+ +K AE D + +GE GI LSGGQR RI++AR + K+A + LL
Sbjct: 109 EEDISKFAEKDNIV---------------LGEGGITLSGGQRARISLARAVYKDADLYLL 153
Query: 526 DEATSALD--SEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
D LD +E EI + + LM KT I + ++ + D++++L G
Sbjct: 154 DSPFGYLDVLTEKEI-FESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 204
>pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
pdb|3FVQ|B Chain B, Crystal Structure Of The Nucleotide Binding Domain Fbpc
Complexed With Atp
Length = 359
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 66/226 (29%), Positives = 119/226 (52%), Gaps = 18/226 (7%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI-SNVSQ 429
Q ++N++SL++ PGE + ++G SG GK+T+ L F GEI + G+ I S +
Sbjct: 15 QNTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN 74
Query: 430 ESLRE-QIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNA-AKCAEADIFIKSLTDEH 486
+RE ++G + Q+ L H ++ NI YG L N + A+ I+++ +
Sbjct: 75 LPVRERRLGYLVQEGVLFPHLTVYRNIAYG--------LGNGKGRTAQERQRIEAMLE-- 124
Query: 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN 546
G G + +LSGGQ+QR A+AR + + ++LLDE SALD + I++ +
Sbjct: 125 -LTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALDEQLRRQIREDMIA 183
Query: 547 LMK--GKTVIAIAH-RLSTISAMDRLIVLDNGCVAEEGSHLDLLKK 589
++ GK+ + ++H R + DR+ V+ G + + S +L ++
Sbjct: 184 ALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229
>pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter.
pdb|2NQ2|D Chain D, An Inward-Facing Conformation Of A Putative Metal-Chelate
Type Abc Transporter
Length = 253
Score = 65.9 bits (159), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 106/222 (47%), Gaps = 24/222 (10%)
Query: 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
N + +N+ F Y ++ + L+ + G+ + ++G++G GKST+ +LLL + G+
Sbjct: 2 NKALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGK 61
Query: 417 ILIDGQNISNVSQESLREQIGMVTQD-TSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
I + + IG V Q +S S+ D +L GR ++ F K +
Sbjct: 62 I-------------EVYQSIGFVPQFFSSPFAYSVLDIVLMGR--STHINTFAKPKSHDY 106
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGI-KLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
+ +++L + H+ + LSGGQRQ I IAR I ++LLDE TSALD
Sbjct: 107 QVAMQALDYLNL-----THLAKREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDL 161
Query: 535 EAEIAIQKSLYNLMKGK--TVIAIAHRLSTISAMDRLIVLDN 574
+ + L +L + + TV+ H+ + + A+ +L N
Sbjct: 162 ANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLN 203
>pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp-
Binding Protein
Length = 375
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 101/215 (46%), Gaps = 18/215 (8%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ----ES 431
+ +LSL I+ GE + L+G SG GK+T + + G+I I+ +++ +
Sbjct: 22 VKDLSLEIKDGEFLVLLGPSGCGKTTTLRXIAGLEEPTRGQIYIEDNLVADPEKGVFVPP 81
Query: 432 LREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
+ V Q +L H ++ DNI + +L K E D ++ + + G
Sbjct: 82 KERDVAXVFQSYALYPHXTVYDNIAF------PLKLRKVPK-QEIDKRVREVAEXLG--- 131
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK- 549
+ +LSGGQRQR+A+ R I++ + L DE S LD++ + + L L +
Sbjct: 132 LTELLNRKPRELSGGQRQRVALGRAIIRRPKVFLXDEPLSNLDAKLRVKXRAELKKLQRQ 191
Query: 550 -GKTVIAIAH-RLSTISAMDRLIVLDNGCVAEEGS 582
G T I + H ++ + DR+ V + G + + G+
Sbjct: 192 LGVTTIYVTHDQVEAXTXGDRIAVXNKGELQQVGT 226
>pdb|2BBO|A Chain A, Human Nbd1 With Phe508
Length = 291
Score = 62.8 bits (151), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 52/212 (24%), Positives = 103/212 (48%), Gaps = 40/212 (18%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE 434
++ +++ I+ G+ + + G +GAGK+++ +++ + G+I G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 435 QIGMVTQDTSLLHRSIRDNILYG--------RPDASECELF-NAAKCAEADIFIKSLTDE 485
I +Q + ++ +I++NI++G R C+L + +K AE D +
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV------ 153
Query: 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD--SEAEIAIQKS 543
+GE GI LS GQ+ +I++AR + K+A + LLD LD +E EI +
Sbjct: 154 ---------LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEI-FESC 203
Query: 544 LYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
+ LM KT I + ++ + D++++L G
Sbjct: 204 VCKLMANKTRILVTSKMEHLKKADKILILHEG 235
>pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCJ|B Chain B, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex
Aeolicus Vf5
pdb|2PCL|A Chain A, Crystal Structure Of Abc Transporter With Complex (Aq_297)
From Aquifex Aeolicus Vf5
Length = 224
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 59/218 (27%), Positives = 101/218 (46%), Gaps = 28/218 (12%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL-- 432
I+ +SL+++ GE + ++G SG+GKST+ +L G++ ++G+ + +++ L
Sbjct: 19 ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSL 78
Query: 433 --REQIGMVTQ------DTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTD 484
++G V Q + + L I + G+P A + E + L D
Sbjct: 79 LRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKE------AKERGEYLLSELGLGD 132
Query: 485 EHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL-DEATSALDSEAEIAIQKS 543
+ RK Y+ LSGG++QR+AIAR L N PILL DE T LDS +
Sbjct: 133 KLSRKPYE---------LSGGEQQRVAIARA-LANEPILLFADEPTGNLDSANTKRVMDI 182
Query: 544 LYNLMKGKT-VIAIAHRLSTISAMDRLIVLDNGCVAEE 580
+ +G T ++ + H R + + +G V E
Sbjct: 183 FLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
>pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From
Salmonella Typhimurium
Length = 262
Score = 62.0 bits (149), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 68/234 (29%), Positives = 107/234 (45%), Gaps = 40/234 (17%)
Query: 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES- 431
H ++ +SL + G+ I ++G SG+GKST + G I+++GQNI+ V +
Sbjct: 19 HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDG 78
Query: 432 ------------LREQIGMVTQDTSL-LHRSIRDNILYG--------RPDASECELFNAA 470
LR ++ MV Q +L H ++ +N++ + DA E L A
Sbjct: 79 QLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLA 138
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
K DE + Y H LSGGQ+QR++IAR + +LL DE TS
Sbjct: 139 KVG---------IDERAQGKYPVH-------LSGGQQQRVSIARALAMEPDVLLFDEPTS 182
Query: 531 ALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGS 582
ALD E + + + L +GKT++ + H + +I L G + EEG
Sbjct: 183 ALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 236
>pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of
The Abc Transporter Complex Cbionq
Length = 275
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 64/227 (28%), Positives = 102/227 (44%), Gaps = 17/227 (7%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+ ++++Y + +++ I+ GE ++G +G GKST+ G IL D +
Sbjct: 11 EELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNK 70
Query: 423 NI--SNVSQESLREQIGMVTQDTS--LLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
I S LRE IG+V QD L S+ ++ +G A +L D
Sbjct: 71 PIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG---AVNMKLPEDEIRKRVDNA 127
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
+K EH K H LS GQ++R+AIA V++ +L+LDE T+ LD
Sbjct: 128 LKRTGIEH-LKDKPTHC------LSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVS 180
Query: 539 AIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582
I K L + K G T+I H + + D + V+ G V +G+
Sbjct: 181 EIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
>pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein
From Pyrococcus Abysii
Length = 607
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 33/219 (15%)
Query: 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQD 442
I+ GE IG+VG +G GK+T +L + G++ D ++ Q E G V +
Sbjct: 379 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYEL 437
Query: 443 TSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502
S + S ++ Y + EL D++ +++ D L
Sbjct: 438 LSKIDSSKLNSNFY------KTELLKPLGII--DLYDRNVED-----------------L 472
Query: 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKG--KTVIAIAHRL 560
SGG+ QR+AIA +L++A I LLDE ++ LD E +A+ +++ +LM+ KT + + H +
Sbjct: 473 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 532
Query: 561 STISAM-DRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598
I + DRLIV + E G H L G+ + R
Sbjct: 533 LMIDYVSDRLIVFE----GEPGRHGRALPPMGMREGMNR 567
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHR 559
+LSGG+ QR+AIA +L+ A DE +S LD + + + + L +GK V+ + H
Sbjct: 228 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 287
Query: 560 LSTISAMDRLI 570
L+ + + +I
Sbjct: 288 LAVLDYLSDVI 298
>pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1
Length = 593
Score = 60.5 bits (145), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 103/219 (47%), Gaps = 33/219 (15%)
Query: 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQD 442
I+ GE IG+VG +G GK+T +L + G++ D ++ Q E G V +
Sbjct: 365 IRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-LTVAYKPQYIKAEYEGTVYEL 423
Query: 443 TSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502
S + S ++ Y + EL D++ +++ D L
Sbjct: 424 LSKIDSSKLNSNFY------KTELLKPLGII--DLYDRNVED-----------------L 458
Query: 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKG--KTVIAIAHRL 560
SGG+ QR+AIA +L++A I LLDE ++ LD E +A+ +++ +LM+ KT + + H +
Sbjct: 459 SGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDV 518
Query: 561 STISAM-DRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598
I + DRLIV + E G H L G+ + R
Sbjct: 519 LMIDYVSDRLIVFE----GEPGRHGRALPPMGMREGMNR 553
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHR 559
+LSGG+ QR+AIA +L+ A DE +S LD + + + + L +GK V+ + H
Sbjct: 214 QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHD 273
Query: 560 LSTISAMDRLI 570
L+ + + +I
Sbjct: 274 LAVLDYLSDVI 284
>pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain
With Atp
Length = 290
Score = 57.8 bits (138), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 51/211 (24%), Positives = 101/211 (47%), Gaps = 39/211 (18%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE 434
++ +++ I+ G+ + + G +GAGK+++ +++ + G+I G+
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSGR------------ 100
Query: 435 QIGMVTQDTSLLHRSIRDNILYGRPDA-------SECELF-NAAKCAEADIFIKSLTDEH 486
I +Q + ++ +I++NI+ D C+L + +K AE D +
Sbjct: 101 -ISFCSQFSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIV------- 152
Query: 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD--SEAEIAIQKSL 544
+GE GI LS GQ+ +I++AR + K+A + LLD LD +E EI + +
Sbjct: 153 --------LGEGGITLSEGQQAKISLARAVYKDADLYLLDSPFGYLDVLTEKEI-FESCV 203
Query: 545 YNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LM KT I + ++ + D++++L G
Sbjct: 204 CKLMANKTRILVTSKMEHLKKADKILILHEG 234
>pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|B Chain B, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
pdb|1G9X|C Chain C, Characterization Of The Twinning Structure Of Mj1267, An
Atp-Binding Cassette Of An Abc Transporter
Length = 257
Score = 55.5 bits (132), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
++ +S+++ G+ ++G +G+GKST+ N++ F G + + ++I+N L
Sbjct: 23 LDGVSISVCKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 436 IGMV---TQDTSLLHRSIRDNILYGRPDASECEL----FNAAKCAEADIFIKSLTDEHGR 488
G+V L ++ +N+L G + E L + E ++ K+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 489 K---GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
K YD GE LSGGQ + + I R ++ N ++++DE + + I +
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 546 NL-MKGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLK 588
L KG T + I HRL + + +D L V+ NG + EG + +K
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding
Cassette From An Abc Transporter
Length = 257
Score = 55.1 bits (131), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 104/225 (46%), Gaps = 17/225 (7%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
++ +S+++ G+ ++G +G+GKST+ N++ F G + + ++I+N L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 436 IGMV---TQDTSLLHRSIRDNILYGRPDASECEL----FNAAKCAEADIFIKSLTDEHGR 488
G+V L ++ +N+L G + E L + E ++ K+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEINPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 489 K---GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
K YD GE LSGGQ + + I R ++ N ++++D+ + + I +
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDQPIAGVAPGLAHDIFNHVL 197
Query: 546 NL-MKGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLK 588
L KG T + I HRL + + +D L V+ NG + EG + +K
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An
Atp- Binding Cassette Of An Abc Transporter
Length = 257
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 56/225 (24%), Positives = 103/225 (45%), Gaps = 17/225 (7%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
++ +S+++ G+ ++G +G+GKST+ N++ F G + + ++I+N L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-H 81
Query: 436 IGMV---TQDTSLLHRSIRDNILYGRPDASECEL----FNAAKCAEADIFIKSLTDEHGR 488
G+V L ++ +N+L G E L + E ++ K+
Sbjct: 82 YGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL 141
Query: 489 K---GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
K YD GE LSGGQ + + I R ++ N ++++DE + + I +
Sbjct: 142 KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVL 197
Query: 546 NL-MKGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLK 588
L KG T + I HRL + + +D L V+ NG + EG + +K
Sbjct: 198 ELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEIK 242
>pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein
(tm0544) From Thermotoga Maritima At 2.10 A Resolution
Length = 256
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 57/234 (24%), Positives = 114/234 (48%), Gaps = 13/234 (5%)
Query: 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
G + K++ +K I+ +S I+ GE GL+G +GAGK+T ++ G +
Sbjct: 14 GAVVVKDLRKRIGKKE-ILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI 477
+ G+N+ E +R+ I + ++ +R+++ I Y R A F A+ +E +
Sbjct: 73 TVFGKNVVEEPHE-VRKLISYLPEEAG-AYRNMQ-GIEYLRFVAG----FYASSSSEIEE 125
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
++ T+ G + + S G +++ IAR ++ N + +LDE TS LD
Sbjct: 126 MVERATE---IAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNA 182
Query: 538 IAIQKSLYNL-MKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKK 589
++K L +G T++ +H + + + DR+ ++ NG + E G+ +L ++
Sbjct: 183 REVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236
>pdb|1YQT|A Chain A, Rnase-L Inhibitor
Length = 538
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 52/86 (60%), Gaps = 7/86 (8%)
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKG 550
YD V E LSGG+ QR+AIA +L++A I LLDE ++ LD E +A+ +++ +L +
Sbjct: 395 YDREVNE----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLXEK 450
Query: 551 --KTVIAIAHRLSTISAM-DRLIVLD 573
KT + + H + I + DRL V +
Sbjct: 451 NEKTALVVEHDVLXIDYVSDRLXVFE 476
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL-MKGKTVIAIAHRL 560
LSGG+ QR+AIA +L+NA DE +S LD + +++ L +GK+V+ + H L
Sbjct: 159 LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDL 218
Query: 561 STISAMDRLI 570
+ + + +I
Sbjct: 219 AVLDYLSDII 228
>pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A
Dipeptide Abc Transporter
Length = 334
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 29/236 (12%)
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKYGEILIDGQNISNVSQESL 432
+ +SL I +VG S +GKSTI + + I G +L G+++ + +E L
Sbjct: 25 DGISLDILENSVTAIVGESASGKSTIIEAMTKTLPPNGRILSGRVLYKGKDLLTMREEEL 84
Query: 433 RE----QIGMVTQ-------DTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKS 481
R+ +I +V Q T + +D + S EL K +E +
Sbjct: 85 RKIRWKEIALVPQAAQQSLNPTMKVIEHFKDTVEAHGVRWSHSELIE--KASEKLRMV-- 140
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD--SEAEIA 539
R +A + + ++LSGG +QR+ IA +L + +L+LDE TSALD ++A I
Sbjct: 141 ------RLNPEAVLNSYPLQLSGGMKQRVLIALALLLDPVVLILDEPTSALDVLTQAHII 194
Query: 540 IQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNGLYS 594
M T+I + H ++ + + D++ V+ G + E S + KN L+
Sbjct: 195 QLLKELKKMLKITLIFVTHDIAVAAELADKVAVIYGGNLVEYNSTFQIF-KNPLHP 249
>pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From
Pyrococcus Furiosus Pfu-867808-001
Length = 214
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 99/203 (48%), Gaps = 23/203 (11%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
K+ +++S YD+ ++ +++TI+ G + G +G GK+T+ + + GEI+
Sbjct: 10 KLEIRDLSVGYDKP--VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 419 IDGQNISNVSQES--LREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEAD 476
+G I+ V + L E+I +V + S+ LYG ++ E+ +A + E
Sbjct: 68 YNGVPITKVKGKIFFLPEEI-IVPRKISVEDYLKAVASLYGV-KVNKNEIMDALESVEVL 125
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
K L GE LS G +R+ +A +L NA I +LD+ A+D ++
Sbjct: 126 DLKKKL-------------GE----LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 537 EIAIQKSLYNLMKGKTVIAIAHR 559
+ + KS+ ++K K ++ I+ R
Sbjct: 169 KHKVLKSILEILKEKGIVIISSR 191
>pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|D Chain D, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|H Chain H, Crystal Structure Of E159q Mutant Of Btucdf
pdb|4DBL|I Chain I, Crystal Structure Of E159q Mutant Of Btucdf
Length = 249
Score = 49.7 bits (117), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 99/229 (43%), Gaps = 30/229 (13%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE--ILIDGQNISNVSQESLR 433
+ LS ++ GE + LVG +GAGKST LL R + G+ I GQ + S L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLA 72
Query: 434 -EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYD 492
+ + Q T + + + D + EL N D G D
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN---------------DVAGALALD 117
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAP-------ILLLDEATSALDSEAEIAIQKSLY 545
+G +LSGG+ QR+ +A V+L+ P +LLLD+ ++LD + A+ K L
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMNSLDVAQQSALDKILS 177
Query: 546 NL-MKGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKKNGL 592
L +G ++ +H L+ T+ R +L G + G ++L L
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 226
>pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
pdb|4FI3|D Chain D, Structure Of Vitamin B12 Transporter Btucd-F In A
Nucleotide-Bound State
Length = 249
Score = 49.3 bits (116), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 62/229 (27%), Positives = 98/229 (42%), Gaps = 30/229 (13%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE--ILIDGQNISNVSQESLR 433
+ LS ++ GE + LVG +GAGKST LL R + G+ I GQ + S L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGKGSIQFAGQPLEAWSATKLA 72
Query: 434 -EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYD 492
+ + Q T + + + D + EL N D G D
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN---------------DVAGALALD 117
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAP-------ILLLDEATSALDSEAEIAIQKSLY 545
+G +LSGG+ QR+ +A V+L+ P +LLLD+ +LD + A+ K L
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDQPMCSLDVAQQSALDKILS 177
Query: 546 NL-MKGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKKNGL 592
L +G ++ +H L+ T+ R +L G + G ++L L
Sbjct: 178 ALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPPNL 226
>pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
pdb|2IHY|B Chain B, Structure Of The Staphylococcus Aureus Putative Atpase
Subunit Of An Atp-Binding Cassette (Abc) Transporter
Length = 279
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 21/229 (9%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV--S 428
Q I+ +S I G+K L G +GAGK+T+ N+L + G + + G+ V S
Sbjct: 32 QGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKXPGKVGYS 91
Query: 429 QESLREQIGMVTQDTSLLHR-----SIRDNILYGR-PDASECELFNAAKCAEADIFIKSL 482
E++R+ IG V+ SLL + + D ++ G + + EA +K +
Sbjct: 92 AETVRQHIGFVSH--SLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV 149
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD---SEAEIA 539
G A ++ LS G++QR+ IAR + +L+LDE + LD E+ ++
Sbjct: 150 -------GXSAKAQQYIGYLSTGEKQRVXIARALXGQPQVLILDEPAAGLDFIARESLLS 202
Query: 540 IQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587
I SL + I + H + I+A ++++L +G ++G+ D+L
Sbjct: 203 ILDSLSDSYPTLAXIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDIL 251
>pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake
pdb|1L7V|D Chain D, Bacterial Abc Transporter Involved In B12 Uptake
Length = 249
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 97/229 (42%), Gaps = 30/229 (13%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE--ILIDGQNISNVSQESLR 433
+ LS ++ GE + LVG +GAGKST LL R G+ I GQ + S L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLA 72
Query: 434 -EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYD 492
+ + Q T + + + D + EL N D G D
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN---------------DVAGALALD 117
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAP-------ILLLDEATSALDSEAEIAIQKSLY 545
+G +LSGG+ QR+ +A V+L+ P +LLLDE ++LD + A+ K L
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILS 177
Query: 546 NL-MKGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKKNGL 592
L +G ++ +H L+ T+ R +L G G ++L L
Sbjct: 178 ALCQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNL 226
>pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
pdb|2QI9|D Chain D, Abc-Transporter Btucd In Complex With Its Periplasmic
Binding Protein Btuf
Length = 249
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 63/229 (27%), Positives = 97/229 (42%), Gaps = 30/229 (13%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE--ILIDGQNISNVSQESLR 433
+ LS ++ GE + LVG +GAGKST LL R G+ I GQ + S L
Sbjct: 16 LGPLSGEVRAGEILHLVGPNGAGKST---LLARXAGXTSGKGSIQFAGQPLEAWSATKLA 72
Query: 434 -EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYD 492
+ + Q T + + + D + EL N D G D
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLN---------------DVAGALALD 117
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAP-------ILLLDEATSALDSEAEIAIQKSLY 545
+G +LSGG+ QR+ +A V+L+ P +LLLDE ++LD + A+ K L
Sbjct: 118 DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPXNSLDVAQQSALDKILS 177
Query: 546 NL-MKGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKKNGL 592
L +G ++ +H L+ T+ R +L G G ++L L
Sbjct: 178 ALSQQGLAIVXSSHDLNHTLRHAHRAWLLKGGKXLASGRREEVLTPPNL 226
>pdb|2VF7|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF7|C Chain C, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|A Chain A, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
pdb|2VF8|B Chain B, Crystal Structure Of Uvra2 From Deinococcus Radiodurans
Length = 842
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 51/94 (54%), Gaps = 5/94 (5%)
Query: 495 VGEHGIKLSGGQRQRIAIA---RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-G 550
+G+ +LSGG+ QRI +A R + + +LDE T+ L +Q+ L L+ G
Sbjct: 724 LGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAG 783
Query: 551 KTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHL 584
TVIA+ H++ ++A D ++ + G E+G L
Sbjct: 784 NTVIAVEHKMQVVAASDWVLDIGPGA-GEDGGRL 816
>pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
pdb|2D2F|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc
From Thermus Thermophilus Hb8
Length = 250
Score = 46.6 bits (109), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 61/228 (26%), Positives = 104/228 (45%), Gaps = 29/228 (12%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL--RFYDIKYGEILIDGQNISNVS-QES 431
I+ ++L + GE L+G +GAGKST+ +L Y ++ GEIL+DG+NI +S E
Sbjct: 18 ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDER 77
Query: 432 LREQIGMVTQDTSLLHRSIRDNIL-------YGRPDASECELFNAAKCA-EADIFIKSLT 483
R+ + + Q + N L GR + E + K A E + +S
Sbjct: 78 ARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGR-EVGVAEFWTKVKKALELLDWDESYL 136
Query: 484 DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS 543
+ +G+ SGG+++R I ++++ +LDE S LD +A + +
Sbjct: 137 SRYLNEGF-----------SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARG 185
Query: 544 LYNLMKGKT----VIAIAHRLSTISAMDRL-IVLDNGCVAEEGSHLDL 586
+ N M+G VI R+ D++ +++D VA G L L
Sbjct: 186 V-NAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELAL 232
>pdb|2IWH|A Chain A, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IWH|B Chain B, Structure Of Yeast Elongation Factor 3 In Complex With
Adpnp
pdb|2IX3|A Chain A, Structure Of Yeast Elongation Factor 3
pdb|2IX3|B Chain B, Structure Of Yeast Elongation Factor 3
Length = 986
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 51/175 (29%), Positives = 75/175 (42%), Gaps = 41/175 (23%)
Query: 366 SFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425
S +Y K +++N L ++ + G+ G +G GKST L+R + +GQ
Sbjct: 442 SLAYGAK-ILLNKTQLRLKRARRYGICGPNGCGKST----LMR--------AIANGQVDG 488
Query: 426 NVSQESLR-----EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
+QE R I DTS+L + K A D I+
Sbjct: 489 FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGV--------------GTKEAIKDKLIE 534
Query: 481 -SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
TDE A LSGG + ++A+AR +L+NA ILLLDE T+ LD+
Sbjct: 535 FGFTDEMIAMPISA--------LSGGWKMKLALARAVLRNADILLLDEPTNHLDT 581
Score = 33.1 bits (74), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 490 GYDAHVGEHGI--KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL 547
G D + H LSGGQ+ ++ +A + +++LDE T+ LD ++ A+ K+L
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
Query: 548 MKGKTVIAIAH 558
G VI I H
Sbjct: 948 EGG--VIIITH 956
>pdb|2IW3|A Chain A, Elongation Factor 3 In Complex With Adp
pdb|2IW3|B Chain B, Elongation Factor 3 In Complex With Adp
Length = 986
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 41/175 (23%)
Query: 366 SFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425
S +Y K +++N L ++ + G+ G +G GKST+ + +GQ
Sbjct: 442 SLAYGAK-ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------------NGQVDG 488
Query: 426 NVSQESLR-----EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
+QE R I DTS+L + K A D I+
Sbjct: 489 FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGV--------------GTKEAIKDKLIE 534
Query: 481 -SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
TDE A LSGG + ++A+AR +L+NA ILLLDE T+ LD+
Sbjct: 535 FGFTDEXIAXPISA--------LSGGWKXKLALARAVLRNADILLLDEPTNHLDT 581
Score = 32.7 bits (73), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 490 GYDAHVGEHGI--KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL 547
G D + H LSGGQ+ ++ +A + +++LDE T+ LD ++ A+ K+L
Sbjct: 888 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 947
Query: 548 MKGKTVIAIAH 558
G VI I H
Sbjct: 948 EGG--VIIITH 956
>pdb|2IX8|A Chain A, Model For Eef3 Bound To An 80s Ribosome
Length = 976
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 73/175 (41%), Gaps = 41/175 (23%)
Query: 366 SFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425
S +Y K +++N L ++ + G+ G +G GKST+ + +GQ
Sbjct: 436 SLAYGAK-ILLNKTQLRLKRARRYGICGPNGCGKSTLXRAIA------------NGQVDG 482
Query: 426 NVSQESLR-----EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
+QE R I DTS+L + K A D I+
Sbjct: 483 FPTQEECRTVYVEHDIDGTHSDTSVLDFVFESGV--------------GTKEAIKDKLIE 528
Query: 481 -SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
TDE A LSGG + ++A+AR +L+NA ILLLDE T+ LD+
Sbjct: 529 FGFTDEXIAXPISA--------LSGGWKXKLALARAVLRNADILLLDEPTNHLDT 575
Score = 32.7 bits (73), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 490 GYDAHVGEHGI--KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL 547
G D + H LSGGQ+ ++ +A + +++LDE T+ LD ++ A+ K+L
Sbjct: 882 GLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF 941
Query: 548 MKGKTVIAIAH 558
G VI I H
Sbjct: 942 EGG--VIIITH 950
>pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
pdb|3OZX|B Chain B, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus
(-Fes Domain)
Length = 538
Score = 43.9 bits (102), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 39/69 (56%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561
LSGG QR+ +A +L+ A + + D+ +S LD + + K++ L+K K VI + H L
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198
Query: 562 TISAMDRLI 570
+ + LI
Sbjct: 199 VLDYLTDLI 207
Score = 42.4 bits (98), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 54/206 (26%), Positives = 98/206 (47%), Gaps = 37/206 (17%)
Query: 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL 432
L+++N + GE IG++G +G GK+T +L+ GEI D
Sbjct: 283 QLVVDNGE--AKEGEIIGILGPNGIGKTTFARILV-------GEITADE----------- 322
Query: 433 REQIGMVTQDTSLLHRSIRDNILYGRPDAS-ECELFNAAKCA--EADIFIKSLTDE-HGR 488
G VT + +L S + ++ D + + L NA+K A + F + +T +
Sbjct: 323 ----GSVTPEKQIL--SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLH 376
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
+ +++V + LSGG+ Q++ IA + K A + +LD+ +S LD E + K++ +
Sbjct: 377 RLLESNVND----LSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVT 432
Query: 549 KGKTVIA--IAHRLSTISAM-DRLIV 571
+ + + I H LS + DR+IV
Sbjct: 433 RERKAVTFIIDHDLSIHDYIADRIIV 458
>pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their
Ribosomal Binding Partners
Length = 608
Score = 42.7 bits (99), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/208 (27%), Positives = 94/208 (45%), Gaps = 30/208 (14%)
Query: 382 TIQPGEKIGLVGRSGAGKSTINNLLL--------RFYDI-KYGEIL--IDGQNISNVSQE 430
T +PG+ +GLVG +G GKST +L RF D ++ EI+ G + N +
Sbjct: 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTK 158
Query: 431 SLREQIGMV--TQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI--FIKSLTDEH 486
L + I + Q + R+I+ + E K E D+ +IK L E+
Sbjct: 159 MLEDDIKAIIKPQYVDNIPRAIKGPVQ----KVGELLKLRMEKSPE-DVKRYIKILQLEN 213
Query: 487 GRKGYDAHVGEHGI-KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
V + I KLSGG+ QR AI ++ A + + DE +S LD + + + +
Sbjct: 214 --------VLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIR 265
Query: 546 NLM-KGKTVIAIAHRLSTISAMDRLIVL 572
+L+ K VI + H LS + + + +
Sbjct: 266 SLLAPTKYVICVEHDLSVLDYLSDFVCI 293
Score = 36.6 bits (83), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 40/75 (53%), Gaps = 3/75 (4%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSL--YNLMKGKTVIAIAHR 559
LSGG+ QR+AI + A I L+DE ++ LDSE I K + + L KT + H
Sbjct: 468 LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHD 527
Query: 560 LSTISAM-DRLIVLD 573
+ + D++IV +
Sbjct: 528 FIMATYLADKVIVFE 542
>pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From
Thermotoga Maritima
Length = 240
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 99/220 (45%), Gaps = 22/220 (10%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL-RE 434
I + L + G+ + L+G +GAGK+T + + + G+I+ +GQ+I+N + R
Sbjct: 22 IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRX 81
Query: 435 QIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADI-FIKSLTDEHGRKGYD 492
I +V + + ++ +N+ G + + E + D+ +I SL
Sbjct: 82 GIALVPEGRRIFPELTVYENLXXGAYNRKDKE------GIKRDLEWIFSLFPR-----LK 130
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD----SEAEIAIQKSLYNLM 548
+ + G LSGG++Q +AI R + +L DE + L SE IQK N
Sbjct: 131 ERLKQLGGTLSGGEQQXLAIGRALXSRPKLLXXDEPSLGLAPILVSEVFEVIQK--IN-Q 187
Query: 549 KGKTVIAIAHR-LSTISAMDRLIVLDNGCVAEEGSHLDLL 587
+G T++ + L + VL+ G + EG +LL
Sbjct: 188 EGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELL 227
>pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna
Length = 916
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKN---APILLLDEATSALDSEAEIAIQKSLYN 546
GY +G+ LSGG+ QRI +A + K + +LDE T L E + + L+
Sbjct: 795 GY-VKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHR 853
Query: 547 LM-KGKTVIAIAHRLSTISAMDRLIVL 572
L+ +G TVI I H L I D +I L
Sbjct: 854 LVDRGNTVIVIEHNLDVIKNADHIIDL 880
Score = 35.0 bits (79), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 36/74 (48%), Gaps = 7/74 (9%)
Query: 502 LSGGQRQRIAIARVILK--NAPILLLDEATSAL---DSEAEIAIQKSLYNLMKGKTVIAI 556
LSGG+ QRI +A I I +LDE T L D+E I K L +L G TVI +
Sbjct: 465 LSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDL--GNTVIVV 522
Query: 557 AHRLSTISAMDRLI 570
H I D +I
Sbjct: 523 EHDEEVIRNADHII 536
>pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
pdb|2ZU0|D Chain D, Crystal Structure Of Sufc-Sufd Complex Involved In The
Iron- Sulfur Cluster Biosynthesis
Length = 267
Score = 40.0 bits (92), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL--RFYDIKYGEILID 420
K++ S + K I+ LSL + PGE ++G +G+GKST++ L Y++ G +
Sbjct: 24 KDLHVSVEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82
Query: 421 GQNISNVSQES-LREQIGMVTQ--------------DTSL-LHRSIRDNILYGRPDASEC 464
G+++ +S E E I M Q T+L RS R R D +
Sbjct: 83 GKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL 142
Query: 465 --ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI 522
E K E D+ +S+ + SGG+++R I ++ + +
Sbjct: 143 MEEKIALLKMPE-DLLTRSVN----------------VGFSGGEKKRNDILQMAVLEPEL 185
Query: 523 LLLDEATSALDSEAEIAIQKSLYNLMKGK-TVIAIAH 558
+LDE+ S LD +A + + +L GK + I + H
Sbjct: 186 CILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 222
>pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|B Chain B, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|C Chain C, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
pdb|2D3W|D Chain D, Crystal Structure Of Escherichia Coli Sufc, An Atpase
Compenent Of The Suf Iron-Sulfur Cluster Assembly
Machinery
Length = 248
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 55/217 (25%), Positives = 94/217 (43%), Gaps = 39/217 (17%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL--RFYDIKYGEILID 420
K++ S + K I+ LSL + PGE ++G +G+GKST++ L Y++ G +
Sbjct: 5 KDLHVSVEDK-AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 421 GQNISNVSQES-LREQIGMVTQ--------------DTSL-LHRSIRDNILYGRPDASEC 464
G+++ +S E E I M Q T+L RS R R D +
Sbjct: 64 GKDLLALSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDL 123
Query: 465 --ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI 522
E K E D+ +S+ + SGG+++R I ++ + +
Sbjct: 124 MEEKIALLKMPE-DLLTRSVN----------------VGFSGGEKKRNDILQMAVLEPEL 166
Query: 523 LLLDEATSALDSEAEIAIQKSLYNLMKGK-TVIAIAH 558
+LDE+ S LD +A + + +L GK + I + H
Sbjct: 167 CILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTH 203
>pdb|3ZQJ|A Chain A, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|B Chain B, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|C Chain C, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|D Chain D, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|E Chain E, Mycobacterium Tuberculosis Uvra
pdb|3ZQJ|F Chain F, Mycobacterium Tuberculosis Uvra
Length = 993
Score = 35.4 bits (80), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 44/87 (50%), Gaps = 5/87 (5%)
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAP---ILLLDEATSALDSEAEIAIQKSLYN 546
GY +G+ LSGG+ QR+ +A + K + + +LDE T+ L + + +
Sbjct: 853 GY-VRLGQPAPTLSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVING 911
Query: 547 LM-KGKTVIAIAHRLSTISAMDRLIVL 572
L+ KG TVI I H L I D +I L
Sbjct: 912 LVDKGNTVIVIEHNLDVIKTSDWIIDL 938
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 47/103 (45%), Gaps = 7/103 (6%)
Query: 502 LSGGQRQRIAIARVILKN--APILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAH 558
LSGG+ QRI +A I + +LDE + L + ++L L G T+I + H
Sbjct: 522 LSGGEAQRIRLATQIGSGLVGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEH 581
Query: 559 RLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQN 601
TI D ++ + G G H + +G Y L R+++
Sbjct: 582 DEDTIEHADWIVDIGPGA----GEHGGRIVHSGPYDELLRNKD 620
>pdb|3UWX|A Chain A, Crystal Structure Of Uvra-Uvrb Complex
Length = 972
Score = 35.4 bits (80), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 495 VGEHGIKLSGGQRQRIAIARVILKNA---PILLLDEATSALDSEAEIAIQKSLYNLMK-G 550
+G+ LSGG+ QR+ +A + + + + +LDE T+ L + + L+ L+ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 551 KTVIAIAHRLSTISAMDRLIVL 572
TV+ I H L I D +I L
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDL 920
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 502 LSGGQRQRIAIARVILK--NAPILLLDEATSAL---DSEAEIAIQKSLYNLMKGKTVIAI 556
LSGG+ QRI +A I + +LDE + L D++ IA KS+ +L G T+I +
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVV 562
Query: 557 AHRLSTISAMDRLIVLDNGC 576
H T+ A D LI + G
Sbjct: 563 EHDEDTMLAADYLIDIGPGA 582
>pdb|2R6F|A Chain A, Crystal Structure Of Bacillus Stearothermophilus Uvra
pdb|2R6F|B Chain B, Crystal Structure Of Bacillus Stearothermophilus Uvra
Length = 972
Score = 35.0 bits (79), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 495 VGEHGIKLSGGQRQRIAIARVILKNA---PILLLDEATSALDSEAEIAIQKSLYNLMK-G 550
+G+ LSGG+ QR+ +A + + + + +LDE T+ L + + L+ L+ G
Sbjct: 839 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 898
Query: 551 KTVIAIAHRLSTISAMDRLIVL 572
TV+ I H L I D +I L
Sbjct: 899 DTVLVIEHNLDVIKTADYIIDL 920
Score = 32.0 bits (71), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 502 LSGGQRQRIAIARVILK--NAPILLLDEATSAL---DSEAEIAIQKSLYNLMKGKTVIAI 556
LSGG+ QRI +A I + +LDE + L D++ IA KS +L G T+I +
Sbjct: 505 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSXRDL--GNTLIVV 562
Query: 557 AHRLSTISAMDRLIVLDNGC 576
H T A D LI + G
Sbjct: 563 EHDEDTXLAADYLIDIGPGA 582
>pdb|3UX8|A Chain A, Crystal Structure Of Uvra
Length = 670
Score = 34.7 bits (78), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 4/82 (4%)
Query: 495 VGEHGIKLSGGQRQRIAIARVILKNA---PILLLDEATSALDSEAEIAIQKSLYNLMK-G 550
+G+ LSGG+ QR+ +A + + + + +LDE T+ L + + L+ L+ G
Sbjct: 537 LGQPATTLSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNG 596
Query: 551 KTVIAIAHRLSTISAMDRLIVL 572
TV+ I H L I D +I L
Sbjct: 597 DTVLVIEHNLDVIKTADYIIDL 618
Score = 34.3 bits (77), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 29/80 (36%), Positives = 42/80 (52%), Gaps = 7/80 (8%)
Query: 502 LSGGQRQRIAIARVILK--NAPILLLDEATSAL---DSEAEIAIQKSLYNLMKGKTVIAI 556
LSGG+ QRI +A I + +LDE + L D++ IA KS+ +L G T+I +
Sbjct: 203 LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDL--GNTLIVV 260
Query: 557 AHRLSTISAMDRLIVLDNGC 576
H T+ A D LI + G
Sbjct: 261 EHDEDTMLAADYLIDIGPGA 280
>pdb|3QG5|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QG5|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 502 LSGGQRQRIAI------ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVI 554
LSGG+R I+I A V +DE S+LD+E + I L L + K ++
Sbjct: 280 LSGGERALISISLAXSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 555 AIAHRLSTISAMDRLIVLDNGCVAEE 580
I H A DR + + G V E
Sbjct: 340 FITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|3QF7|A Chain A, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
pdb|3QF7|B Chain B, The Mre11:rad50 Complex Forms An Atp Dependent Molecular
Clamp In Dna Double-Strand Break Repair
Length = 365
Score = 34.3 bits (77), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 502 LSGGQRQRIAI------ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVI 554
LSGG+R I+I A V +DE S+LD+E + I L L + K ++
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 555 AIAHRLSTISAMDRLIVLDNGCVAEE 580
I H A DR + + G V E
Sbjct: 340 FITHDREFSEAFDRKLRITGGVVVNE 365
>pdb|3ZGX|A Chain A, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
pdb|3ZGX|B Chain B, Crystal Structure Of The Kleisin-n Smc Interface In
Prokaryotic Condensin
Length = 426
Score = 32.3 bits (72), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 31/72 (43%), Gaps = 4/72 (5%)
Query: 502 LSGGQRQRIAIARVI----LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIA 557
LSGG+R AIA + ++ P +LDE +ALD + L I I
Sbjct: 329 LSGGERALTAIALLFSILKVRPVPFCVLDEVEAALDEANVFRFAQYLKKYSSDTQFIVIT 388
Query: 558 HRLSTISAMDRL 569
HR T+ D L
Sbjct: 389 HRKGTMEEADVL 400
>pdb|1ZUU|A Chain A, Crystal Structure Of The Yeast Bzz1 First Sh3 Domain At
0.97-A Resolution
Length = 58
Score = 32.0 bits (71), Expect = 1.2, Method: Composition-based stats.
Identities = 18/41 (43%), Positives = 27/41 (65%), Gaps = 5/41 (12%)
Query: 365 VSFSYDQKHLIINNLSLTIQPGEKIGLVGR-SGAGKSTINN 404
V ++Y QK ++ +TI PG+KI LV R +G+G + INN
Sbjct: 6 VLYAYVQK----DDDEITITPGDKISLVARDTGSGWTKINN 42
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 29.6 bits (65), Expect = 4.5, Method: Composition-based stats.
Identities = 21/84 (25%), Positives = 40/84 (47%), Gaps = 9/84 (10%)
Query: 389 IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI-----GMVTQDT 443
IG+ G+ G GKST+ +L KYG +++ I + E ++E++ G V +D
Sbjct: 15 IGVTGKIGTGKSTVCEILKN----KYGAHVVNVDRIGHEVLEEVKEKLVELFGGSVLEDG 70
Query: 444 SLLHRSIRDNILYGRPDASECELF 467
+ + + + R + + EL
Sbjct: 71 KVNRKKLAGIVFESRENLKKLELL 94
>pdb|1E69|A Chain A, Smc Head Domain From Thermotoga Maritima
pdb|1E69|B Chain B, Smc Head Domain From Thermotoga Maritima
pdb|1E69|C Chain C, Smc Head Domain From Thermotoga Maritima
pdb|1E69|D Chain D, Smc Head Domain From Thermotoga Maritima
pdb|1E69|E Chain E, Smc Head Domain From Thermotoga Maritima
pdb|1E69|F Chain F, Smc Head Domain From Thermotoga Maritima
Length = 322
Score = 29.6 bits (65), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 502 LSGGQRQRIAIARVI----LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIA 557
LSGG++ + +A + +K +P +LDE S LD ++ L K I I
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVIT 279
Query: 558 HRLSTISAMDRL--IVLDNGCVA 578
H + A D L + + NG A
Sbjct: 280 HNKIVMEAADLLHGVTMVNGVSA 302
>pdb|4GBF|A Chain A, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
pdb|4GBF|B Chain B, Crystal Structure Of The C-Terminal Domain Of Gp131 From
Bacteriophage Phikz
Length = 400
Score = 29.6 bits (65), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Query: 72 PSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQVL 108
PS +W N +S +L G + SST G +F+HQ L
Sbjct: 132 PSSIWANKTSLYMLTGKFIFSST---GESAIFEHQDL 165
>pdb|1YHF|A Chain A, Crystal Structure Of Conserved Spy1581 Protein Of Unknown
Function From Streptococcus Pyogenes
Length = 115
Score = 28.9 bits (63), Expect = 8.1, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 526 DEATSALDSEAEIAIQKSLYNLMKGKTVI---AIAHRLSTISAMDRLIVL 572
D + L AEI I + Y + +G+T++ I H L + A L+V+
Sbjct: 61 DAXVTILSGLAEITIDQETYRVAEGQTIVXPAGIPHALYAVEAFQXLLVV 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,861,493
Number of Sequences: 62578
Number of extensions: 594335
Number of successful extensions: 2411
Number of sequences better than 100.0: 118
Number of HSP's better than 100.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 21
Number of HSP's that attempted gapping in prelim test: 2145
Number of HSP's gapped (non-prelim): 167
length of query: 604
length of database: 14,973,337
effective HSP length: 104
effective length of query: 500
effective length of database: 8,465,225
effective search space: 4232612500
effective search space used: 4232612500
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)