Query psy13349
Match_columns 604
No_of_seqs 256 out of 2750
Neff 7.9
Searched_HMMs 46136
Date Fri Aug 16 17:07:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13349.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13349hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0058|consensus 100.0 6E-110 1E-114 900.5 66.0 570 24-602 134-706 (716)
2 COG2274 SunT ABC-type bacterio 100.0 5E-103 1E-107 878.8 71.9 582 8-600 125-708 (709)
3 KOG0055|consensus 100.0 7.6E-99 2E-103 855.5 69.6 571 25-602 652-1227(1228)
4 PRK11174 cysteine/glutathione 100.0 1.5E-96 3E-101 832.0 76.0 570 22-603 7-587 (588)
5 COG1132 MdlB ABC-type multidru 100.0 3.3E-94 7.2E-99 809.0 75.2 563 25-602 4-566 (567)
6 TIGR01193 bacteriocin_ABC ABC- 100.0 3.9E-94 8.4E-99 827.8 74.3 578 9-598 128-707 (708)
7 TIGR03797 NHPM_micro_ABC2 NHPM 100.0 4.5E-93 9.7E-98 816.3 77.7 562 23-600 122-685 (686)
8 TIGR03796 NHPM_micro_ABC1 NHPM 100.0 1.8E-93 3.9E-98 822.9 74.3 576 9-597 126-709 (710)
9 TIGR00958 3a01208 Conjugate Tr 100.0 1E-92 2.2E-97 813.9 74.7 564 21-596 145-710 (711)
10 TIGR03375 type_I_sec_LssB type 100.0 9.3E-92 2E-96 806.4 75.3 555 23-589 133-689 (694)
11 PRK11160 cysteine/glutathione 100.0 1.7E-91 3.6E-96 786.6 74.6 564 27-599 6-573 (574)
12 PRK11176 lipid transporter ATP 100.0 2.4E-91 5.1E-96 789.0 76.2 567 24-602 12-581 (582)
13 TIGR01846 type_I_sec_HlyB type 100.0 7.7E-91 1.7E-95 798.4 76.6 567 23-601 125-693 (694)
14 COG4988 CydD ABC-type transpor 100.0 2.4E-90 5.3E-95 735.7 68.7 552 40-602 3-557 (559)
15 KOG0055|consensus 100.0 1.6E-92 3.4E-97 804.0 55.2 571 24-601 15-589 (1228)
16 COG4987 CydC ABC-type transpor 100.0 1.5E-90 3.2E-95 725.4 64.1 564 25-599 5-572 (573)
17 PRK10790 putative multidrug tr 100.0 1.5E-89 3.2E-94 775.3 76.7 566 24-602 10-577 (592)
18 PTZ00265 multidrug resistance 100.0 4.9E-90 1.1E-94 833.6 74.9 565 25-601 813-1466(1466)
19 PRK13657 cyclic beta-1,2-gluca 100.0 6.2E-89 1.4E-93 769.4 77.1 563 26-601 8-571 (588)
20 TIGR01192 chvA glucan exporter 100.0 1.4E-88 3E-93 764.1 76.7 564 25-601 7-571 (585)
21 TIGR02203 MsbA_lipidA lipid A 100.0 1.3E-88 2.9E-93 765.3 75.7 564 26-601 3-569 (571)
22 KOG0056|consensus 100.0 1.7E-92 3.7E-97 724.5 34.8 553 38-602 216-776 (790)
23 TIGR02868 CydC thiol reductant 100.0 5.2E-88 1.1E-92 753.2 68.4 524 26-560 2-529 (529)
24 TIGR02204 MsbA_rel ABC transpo 100.0 3.5E-87 7.6E-92 754.3 75.6 567 24-600 5-575 (576)
25 KOG0057|consensus 100.0 1.3E-88 2.7E-93 711.3 57.8 556 37-602 30-588 (591)
26 PRK10789 putative multidrug tr 100.0 3.4E-86 7.4E-91 743.3 71.7 548 45-602 3-552 (569)
27 TIGR02857 CydD thiol reductant 100.0 2.4E-84 5.2E-89 723.8 69.9 526 35-572 1-529 (529)
28 TIGR01842 type_I_sec_PrtD type 100.0 5.6E-83 1.2E-87 714.3 72.2 537 33-588 2-542 (544)
29 TIGR00957 MRP_assoc_pro multi 100.0 2E-83 4.4E-88 783.5 74.4 544 41-599 969-1519(1522)
30 PTZ00265 multidrug resistance 100.0 1.9E-82 4E-87 767.7 73.8 564 24-601 47-729 (1466)
31 PLN03130 ABC transporter C fam 100.0 2.4E-82 5.2E-87 773.3 73.5 562 25-601 901-1475(1622)
32 COG5265 ATM1 ABC-type transpor 100.0 7.9E-85 1.7E-89 662.4 40.3 485 109-598 10-496 (497)
33 PTZ00243 ABC transporter; Prov 100.0 2.7E-81 5.9E-86 763.1 74.9 487 109-601 1026-1547(1560)
34 PLN03232 ABC transporter C fam 100.0 7.8E-81 1.7E-85 759.9 72.6 498 94-601 964-1472(1495)
35 TIGR01194 cyc_pep_trnsptr cycl 100.0 8.1E-78 1.8E-82 673.2 66.3 531 24-580 4-551 (555)
36 TIGR01271 CFTR_protein cystic 100.0 3.8E-77 8.3E-82 726.4 73.6 495 96-601 941-1453(1490)
37 KOG0054|consensus 100.0 1.3E-77 2.7E-82 697.5 61.7 497 95-599 873-1374(1381)
38 COG4618 ArpD ABC-type protease 100.0 3.1E-75 6.7E-80 604.6 53.8 543 30-589 16-561 (580)
39 PLN03232 ABC transporter C fam 100.0 7.2E-74 1.6E-78 698.7 72.0 544 27-601 291-841 (1495)
40 PLN03130 ABC transporter C fam 100.0 1.8E-73 4E-78 695.4 73.6 546 27-600 291-840 (1622)
41 PRK10522 multidrug transporter 100.0 3E-73 6.5E-78 635.9 66.9 529 27-590 3-541 (547)
42 TIGR00954 3a01203 Peroxysomal 100.0 9.4E-69 2E-73 608.7 62.8 526 25-573 79-652 (659)
43 TIGR00957 MRP_assoc_pro multi 100.0 3.5E-67 7.5E-72 640.9 72.9 545 27-600 307-862 (1522)
44 KOG0054|consensus 100.0 1.1E-65 2.4E-70 597.8 64.0 547 28-599 192-742 (1381)
45 TIGR01271 CFTR_protein cystic 100.0 2.3E-63 4.9E-68 605.7 73.0 541 27-598 70-646 (1490)
46 PTZ00243 ABC transporter; Prov 100.0 2.3E-61 4.9E-66 588.6 72.5 547 26-599 233-880 (1560)
47 cd03289 ABCC_CFTR2 The CFTR su 100.0 1.7E-54 3.8E-59 441.3 27.5 236 358-600 1-237 (275)
48 COG1126 GlnQ ABC-type polar am 100.0 6.7E-54 1.5E-58 403.9 21.9 218 359-589 2-226 (240)
49 cd03252 ABCC_Hemolysin The ABC 100.0 5.2E-51 1.1E-55 409.1 27.5 235 360-599 1-236 (237)
50 COG1135 AbcC ABC-type metal io 100.0 2.7E-51 5.8E-56 405.0 21.6 214 360-589 2-232 (339)
51 COG1117 PstB ABC-type phosphat 100.0 1.7E-51 3.6E-56 385.8 18.7 219 358-589 6-238 (253)
52 COG1125 OpuBA ABC-type proline 100.0 2.8E-51 6.1E-56 393.3 18.6 217 360-590 2-227 (309)
53 cd03253 ABCC_ATM1_transporter 100.0 6.9E-50 1.5E-54 400.7 27.7 235 360-599 1-235 (236)
54 PRK14257 phosphate ABC transpo 100.0 4E-50 8.8E-55 419.4 25.9 223 355-589 76-314 (329)
55 cd03288 ABCC_SUR2 The SUR doma 100.0 1.9E-49 4.2E-54 402.4 28.5 239 356-600 16-256 (257)
56 cd03254 ABCC_Glucan_exporter_l 100.0 1.5E-49 3.2E-54 396.5 26.7 227 359-590 2-228 (229)
57 COG4178 ABC-type uncharacteriz 100.0 2.3E-46 4.9E-51 405.8 53.2 504 43-573 53-587 (604)
58 cd03251 ABCC_MsbA MsbA is an e 100.0 2.4E-49 5.2E-54 396.3 27.1 232 360-596 1-233 (234)
59 COG1120 FepC ABC-type cobalami 100.0 7.2E-50 1.6E-54 395.2 21.4 215 359-590 2-230 (258)
60 COG4615 PvdE ABC-type sideroph 100.0 4E-46 8.7E-51 375.7 47.5 520 28-581 4-530 (546)
61 cd03249 ABC_MTABC3_MDL1_MDL2 M 100.0 1E-48 2.2E-53 392.7 27.1 234 360-598 1-236 (238)
62 cd03244 ABCC_MRP_domain2 Domai 100.0 2.1E-48 4.7E-53 386.0 26.1 218 359-582 2-220 (221)
63 COG1127 Ttg2A ABC-type transpo 100.0 2.1E-48 4.5E-53 372.2 22.9 227 358-597 7-245 (263)
64 COG1136 SalX ABC-type antimicr 100.0 2.8E-48 6.1E-53 376.7 24.0 204 360-579 2-222 (226)
65 COG1124 DppF ABC-type dipeptid 100.0 2.1E-48 4.5E-53 374.1 22.6 222 359-596 3-240 (252)
66 cd03245 ABCC_bacteriocin_expor 100.0 5.5E-48 1.2E-52 382.8 26.2 218 359-581 2-220 (220)
67 TIGR02314 ABC_MetN D-methionin 100.0 3.5E-48 7.5E-53 405.7 24.8 223 360-598 2-242 (343)
68 COG2884 FtsE Predicted ATPase 100.0 7.3E-49 1.6E-53 361.6 17.1 208 360-583 2-221 (223)
69 COG3839 MalK ABC-type sugar tr 100.0 2.5E-48 5.5E-53 398.3 23.0 212 359-589 3-224 (338)
70 cd03261 ABC_Org_Solvent_Resist 100.0 4.3E-48 9.3E-53 387.5 23.5 222 360-594 1-232 (235)
71 COG1121 ZnuC ABC-type Mn/Zn tr 100.0 4.8E-48 1E-52 380.2 22.9 211 359-590 4-229 (254)
72 COG3638 ABC-type phosphate/pho 100.0 3.4E-48 7.3E-53 369.8 21.0 214 359-588 3-237 (258)
73 COG3840 ThiQ ABC-type thiamine 100.0 3.5E-48 7.7E-53 354.3 20.2 211 360-591 2-222 (231)
74 PRK13631 cbiO cobalt transport 100.0 2.4E-47 5.2E-52 397.3 28.5 219 358-588 20-265 (320)
75 COG1116 TauB ABC-type nitrate/ 100.0 4.3E-48 9.3E-53 375.4 21.2 197 359-577 3-211 (248)
76 COG1122 CbiO ABC-type cobalt t 100.0 1.5E-47 3.3E-52 378.5 23.1 216 359-590 3-230 (235)
77 COG3842 PotA ABC-type spermidi 100.0 1.4E-47 3.1E-52 394.8 20.4 214 358-590 4-228 (352)
78 cd03219 ABC_Mj1267_LivG_branch 100.0 6.2E-47 1.3E-51 379.3 23.9 222 360-589 1-233 (236)
79 PRK13650 cbiO cobalt transport 100.0 7.7E-47 1.7E-51 387.6 24.6 215 359-589 4-230 (279)
80 cd03248 ABCC_TAP TAP, the Tran 100.0 7.3E-47 1.6E-51 376.3 23.7 216 357-577 9-226 (226)
81 PRK11650 ugpC glycerol-3-phosp 100.0 9.7E-47 2.1E-51 397.7 25.9 213 359-589 3-225 (356)
82 PRK14269 phosphate ABC transpo 100.0 8.3E-47 1.8E-51 380.7 24.2 218 359-589 2-231 (246)
83 cd03260 ABC_PstB_phosphate_tra 100.0 3.9E-47 8.5E-52 378.5 21.5 210 360-586 1-227 (227)
84 cd03256 ABC_PhnC_transporter A 100.0 8.9E-47 1.9E-51 379.3 23.5 221 360-587 1-233 (241)
85 PRK13647 cbiO cobalt transport 100.0 1.3E-46 2.8E-51 384.9 25.0 213 359-587 4-226 (274)
86 TIGR02315 ABC_phnC phosphonate 100.0 1.7E-46 3.7E-51 377.8 24.1 221 360-587 2-234 (243)
87 TIGR00960 3a0501s02 Type II (G 100.0 7.6E-47 1.6E-51 373.6 21.1 202 360-577 2-216 (216)
88 PRK11153 metN DL-methionine tr 100.0 4.4E-46 9.6E-51 392.0 27.6 218 360-589 2-231 (343)
89 cd03263 ABC_subfamily_A The AB 100.0 1.7E-46 3.7E-51 372.1 22.8 214 360-586 1-219 (220)
90 cd03224 ABC_TM1139_LivF_branch 100.0 2.5E-46 5.4E-51 371.4 24.0 217 360-588 1-221 (222)
91 PRK14250 phosphate ABC transpo 100.0 4.7E-46 1E-50 374.1 25.8 222 359-597 3-231 (241)
92 cd03296 ABC_CysA_sulfate_impor 100.0 2.4E-46 5.2E-51 375.8 23.6 216 359-589 2-227 (239)
93 PRK13635 cbiO cobalt transport 100.0 2.4E-46 5.3E-51 383.7 24.1 216 359-590 5-231 (279)
94 PRK13636 cbiO cobalt transport 100.0 3.2E-46 6.9E-51 383.7 24.6 219 359-589 5-232 (283)
95 PRK13637 cbiO cobalt transport 100.0 6.4E-46 1.4E-50 382.1 26.8 217 360-588 3-234 (287)
96 PRK14242 phosphate transporter 100.0 2.5E-46 5.5E-51 378.8 23.3 219 358-589 5-238 (253)
97 PRK11432 fbpC ferric transport 100.0 2.5E-46 5.3E-51 393.6 23.8 212 359-589 6-227 (351)
98 cd03259 ABC_Carb_Solutes_like 100.0 1.5E-46 3.4E-51 370.6 20.8 207 360-581 1-213 (213)
99 cd03369 ABCC_NFT1 Domain 2 of 100.0 7.7E-46 1.7E-50 364.0 25.5 203 357-583 4-207 (207)
100 PRK13646 cbiO cobalt transport 100.0 9.1E-46 2E-50 381.0 26.8 219 359-589 2-236 (286)
101 PRK14273 phosphate ABC transpo 100.0 1E-45 2.2E-50 374.7 26.6 219 358-589 6-239 (254)
102 cd03258 ABC_MetN_methionine_tr 100.0 4.7E-46 1E-50 372.2 23.4 217 360-588 2-230 (233)
103 cd03295 ABC_OpuCA_Osmoprotecti 100.0 5.6E-46 1.2E-50 373.8 24.0 218 360-589 1-226 (242)
104 TIGR03864 PQQ_ABC_ATP ABC tran 100.0 9E-46 2E-50 370.9 25.2 225 360-598 2-233 (236)
105 TIGR03265 PhnT2 putative 2-ami 100.0 4.4E-46 9.6E-51 392.3 23.9 216 359-589 4-225 (353)
106 PRK09536 btuD corrinoid ABC tr 100.0 7.6E-46 1.6E-50 394.7 25.8 221 359-597 3-236 (402)
107 cd03255 ABC_MJ0796_Lo1CDE_FtsE 100.0 3E-46 6.4E-51 369.9 21.1 206 360-577 1-218 (218)
108 PRK13643 cbiO cobalt transport 100.0 1.2E-45 2.6E-50 380.3 26.4 217 360-588 2-233 (288)
109 PRK10744 pstB phosphate transp 100.0 8.6E-46 1.9E-50 376.3 25.0 220 357-589 11-245 (260)
110 cd03226 ABC_cobalt_CbiO_domain 100.0 2.6E-46 5.7E-51 366.7 20.4 199 361-578 1-205 (205)
111 PRK13634 cbiO cobalt transport 100.0 1.4E-45 3E-50 380.2 26.6 218 360-589 3-236 (290)
112 PRK13652 cbiO cobalt transport 100.0 8.2E-46 1.8E-50 379.7 24.6 220 359-590 3-229 (277)
113 PRK14267 phosphate ABC transpo 100.0 8E-46 1.7E-50 375.1 24.0 226 359-597 4-247 (253)
114 TIGR00972 3a0107s01c2 phosphat 100.0 1.4E-45 3E-50 372.1 25.6 217 360-589 2-233 (247)
115 cd03218 ABC_YhbG The ABC trans 100.0 9.4E-46 2E-50 369.8 24.1 216 360-588 1-222 (232)
116 TIGR01186 proV glycine betaine 100.0 6.1E-46 1.3E-50 390.9 23.6 202 372-589 5-220 (363)
117 PRK14247 phosphate ABC transpo 100.0 1.1E-45 2.4E-50 373.5 24.2 226 359-597 3-244 (250)
118 PRK11629 lolD lipoprotein tran 100.0 7.9E-46 1.7E-50 370.6 22.7 212 359-582 5-228 (233)
119 PRK14235 phosphate transporter 100.0 1.5E-45 3.3E-50 375.8 25.2 220 357-589 17-252 (267)
120 PRK10851 sulfate/thiosulfate t 100.0 9.5E-46 2.1E-50 389.8 24.4 216 359-589 2-227 (353)
121 cd03265 ABC_DrrA DrrA is the A 100.0 1.2E-45 2.6E-50 366.1 23.4 209 360-586 1-219 (220)
122 cd03264 ABC_drug_resistance_li 100.0 9.6E-46 2.1E-50 364.4 22.6 203 360-581 1-211 (211)
123 PRK13642 cbiO cobalt transport 100.0 1.6E-45 3.4E-50 377.6 24.9 216 359-590 4-231 (277)
124 cd03268 ABC_BcrA_bacitracin_re 100.0 1.2E-45 2.7E-50 362.8 23.1 203 360-581 1-208 (208)
125 PRK13644 cbiO cobalt transport 100.0 1.4E-45 3.1E-50 377.2 24.1 218 360-589 2-225 (274)
126 PRK13632 cbiO cobalt transport 100.0 1.4E-45 3.1E-50 376.9 23.8 219 359-589 7-232 (271)
127 TIGR02673 FtsE cell division A 100.0 8.7E-46 1.9E-50 365.5 21.3 201 360-576 2-214 (214)
128 PRK11614 livF leucine/isoleuci 100.0 2.6E-45 5.6E-50 367.9 24.9 219 359-589 5-227 (237)
129 PRK09452 potA putrescine/sperm 100.0 2.3E-45 5.1E-50 388.8 25.9 213 358-589 13-235 (375)
130 PRK13633 cobalt transporter AT 100.0 1.4E-45 3.1E-50 378.5 23.5 215 359-589 4-234 (280)
131 cd03266 ABC_NatA_sodium_export 100.0 1.8E-45 3.9E-50 364.3 23.4 209 360-581 2-218 (218)
132 PRK13537 nodulation ABC transp 100.0 2.6E-45 5.7E-50 380.4 25.6 218 358-589 6-228 (306)
133 PRK10575 iron-hydroxamate tran 100.0 2.2E-45 4.7E-50 374.4 24.4 221 359-597 11-245 (265)
134 cd03294 ABC_Pro_Gly_Bertaine T 100.0 1E-45 2.2E-50 377.4 21.9 218 361-595 26-258 (269)
135 PRK11231 fecE iron-dicitrate t 100.0 1.7E-45 3.7E-50 373.2 23.3 221 360-598 3-236 (255)
136 PRK14259 phosphate ABC transpo 100.0 3.5E-45 7.5E-50 373.5 25.7 219 358-589 12-254 (269)
137 PRK13651 cobalt transporter AT 100.0 3.5E-45 7.7E-50 378.8 26.0 218 360-589 3-255 (305)
138 TIGR03411 urea_trans_UrtD urea 100.0 3.6E-45 7.7E-50 368.0 25.3 222 359-588 2-231 (242)
139 TIGR03258 PhnT 2-aminoethylpho 100.0 1.6E-45 3.5E-50 388.6 23.8 217 358-589 4-229 (362)
140 TIGR03410 urea_trans_UrtE urea 100.0 1.9E-45 4.2E-50 367.1 23.1 212 360-586 1-219 (230)
141 cd03291 ABCC_CFTR1 The CFTR su 100.0 9.1E-45 2E-49 371.2 28.4 220 356-597 36-256 (282)
142 TIGR02769 nickel_nikE nickel i 100.0 2.5E-45 5.5E-50 373.9 24.3 227 359-597 2-250 (265)
143 TIGR02211 LolD_lipo_ex lipopro 100.0 1.7E-45 3.6E-50 365.3 22.3 207 360-578 2-220 (221)
144 PRK14251 phosphate ABC transpo 100.0 2.1E-45 4.6E-50 371.6 23.1 219 359-590 4-237 (251)
145 cd03250 ABCC_MRP_domain1 Domai 100.0 3.1E-45 6.7E-50 358.9 23.4 198 360-576 1-204 (204)
146 TIGR03005 ectoine_ehuA ectoine 100.0 2.7E-45 5.8E-50 371.1 23.6 217 360-589 1-237 (252)
147 PRK11264 putative amino-acid A 100.0 1E-44 2.2E-49 366.5 27.5 218 359-589 3-234 (250)
148 cd03301 ABC_MalK_N The N-termi 100.0 1.9E-45 4E-50 362.8 21.7 207 360-581 1-213 (213)
149 cd03293 ABC_NrtD_SsuB_transpor 100.0 1.3E-45 2.7E-50 365.9 20.5 207 360-583 1-218 (220)
150 PRK09493 glnQ glutamine ABC tr 100.0 6.6E-45 1.4E-49 365.6 25.9 217 360-589 2-226 (240)
151 cd03292 ABC_FtsE_transporter F 100.0 2.1E-45 4.6E-50 362.7 21.9 202 360-577 1-214 (214)
152 PRK11000 maltose/maltodextrin 100.0 2.9E-45 6.4E-50 388.9 24.6 216 359-589 3-224 (369)
153 PRK14274 phosphate ABC transpo 100.0 3.9E-45 8.5E-50 371.4 24.5 218 359-589 12-244 (259)
154 PRK13640 cbiO cobalt transport 100.0 4.1E-45 8.9E-50 375.3 24.9 215 358-588 4-232 (282)
155 PRK14245 phosphate ABC transpo 100.0 2.3E-45 5E-50 371.1 22.6 218 359-589 3-235 (250)
156 cd03257 ABC_NikE_OppD_transpor 100.0 2.9E-45 6.4E-50 365.1 22.9 210 360-581 2-228 (228)
157 PRK13649 cbiO cobalt transport 100.0 6.5E-45 1.4E-49 373.9 26.1 218 360-589 3-235 (280)
158 PRK11831 putative ABC transpor 100.0 5.3E-45 1.1E-49 372.3 25.1 228 358-598 6-244 (269)
159 PRK11124 artP arginine transpo 100.0 5.1E-45 1.1E-49 366.9 24.5 219 359-590 2-232 (242)
160 PRK14240 phosphate transporter 100.0 3.2E-45 7E-50 370.1 23.1 219 358-589 2-235 (250)
161 PRK14268 phosphate ABC transpo 100.0 3.4E-45 7.4E-50 371.5 23.4 219 358-589 11-243 (258)
162 PRK13648 cbiO cobalt transport 100.0 4.4E-45 9.5E-50 372.9 24.1 220 359-590 7-233 (269)
163 PRK15079 oligopeptide ABC tran 100.0 1.2E-44 2.7E-49 378.4 27.9 225 359-595 8-259 (331)
164 PRK10895 lipopolysaccharide AB 100.0 5.9E-45 1.3E-49 366.2 24.5 218 359-589 3-227 (241)
165 PRK10619 histidine/lysine/argi 100.0 6.7E-45 1.4E-49 369.2 25.1 219 358-589 4-242 (257)
166 PRK14238 phosphate transporter 100.0 7.1E-45 1.5E-49 371.6 25.4 219 358-589 23-256 (271)
167 PRK14237 phosphate transporter 100.0 5.6E-45 1.2E-49 371.6 24.6 220 357-589 18-252 (267)
168 cd03225 ABC_cobalt_CbiO_domain 100.0 2E-45 4.4E-50 362.0 20.4 204 361-576 1-211 (211)
169 PRK13641 cbiO cobalt transport 100.0 7.5E-45 1.6E-49 374.3 25.5 219 359-589 2-235 (287)
170 PRK14236 phosphate transporter 100.0 4.9E-45 1.1E-49 373.1 23.8 220 357-589 23-257 (272)
171 PRK14248 phosphate ABC transpo 100.0 5.1E-45 1.1E-49 372.3 23.8 218 359-589 21-253 (268)
172 PRK14239 phosphate transporter 100.0 4.4E-45 9.5E-50 369.5 23.1 218 359-589 5-237 (252)
173 PRK14249 phosphate ABC transpo 100.0 7.5E-45 1.6E-49 367.6 24.4 218 359-589 4-236 (251)
174 PRK13645 cbiO cobalt transport 100.0 1E-44 2.2E-49 374.0 25.8 220 358-589 5-241 (289)
175 PRK14256 phosphate ABC transpo 100.0 9.3E-45 2E-49 367.1 24.9 219 358-589 3-237 (252)
176 PRK13638 cbiO cobalt transport 100.0 5.2E-45 1.1E-49 372.8 23.3 218 360-590 2-227 (271)
177 TIGR01288 nodI ATP-binding ABC 100.0 9.3E-45 2E-49 376.5 25.4 217 359-589 4-225 (303)
178 PRK10253 iron-enterobactin tra 100.0 1.1E-44 2.4E-49 369.2 25.4 215 358-589 6-234 (265)
179 PRK10070 glycine betaine trans 100.0 5.9E-45 1.3E-49 387.7 24.4 213 374-598 42-266 (400)
180 PRK13639 cbiO cobalt transport 100.0 5.2E-45 1.1E-49 373.4 23.1 218 360-589 2-227 (275)
181 PRK10908 cell division protein 100.0 7.1E-45 1.5E-49 361.1 23.3 208 360-579 2-217 (222)
182 PRK10247 putative ABC transpor 100.0 7E-45 1.5E-49 361.8 23.1 212 358-584 6-223 (225)
183 PRK11300 livG leucine/isoleuci 100.0 1.2E-44 2.6E-49 367.0 25.3 223 359-589 5-244 (255)
184 PRK11247 ssuB aliphatic sulfon 100.0 9.2E-45 2E-49 367.2 24.1 205 358-584 11-219 (257)
185 PRK14244 phosphate ABC transpo 100.0 3.6E-45 7.8E-50 369.9 21.1 217 360-589 6-238 (251)
186 cd03290 ABCC_SUR1_N The SUR do 100.0 1E-44 2.2E-49 359.0 23.7 210 361-576 2-218 (218)
187 PRK14262 phosphate ABC transpo 100.0 1.1E-44 2.3E-49 366.3 24.3 226 359-597 3-244 (250)
188 PRK14261 phosphate ABC transpo 100.0 9.7E-45 2.1E-49 367.2 24.1 227 359-598 6-248 (253)
189 PRK13548 hmuV hemin importer A 100.0 1.5E-44 3.3E-49 366.6 25.5 218 359-589 2-231 (258)
190 PRK10584 putative ABC transpor 100.0 9E-45 1.9E-49 361.8 23.4 206 359-580 6-227 (228)
191 PRK14243 phosphate transporter 100.0 1.6E-44 3.4E-49 367.8 25.6 218 359-589 10-249 (264)
192 TIGR03522 GldA_ABC_ATP gliding 100.0 1.4E-44 3.1E-49 374.6 25.5 216 360-589 3-222 (301)
193 cd03247 ABCC_cytochrome_bd The 100.0 7E-45 1.5E-49 348.7 21.3 177 360-581 1-178 (178)
194 PRK14270 phosphate ABC transpo 100.0 1.2E-44 2.7E-49 366.0 24.2 218 359-589 4-236 (251)
195 COG1131 CcmA ABC-type multidru 100.0 8.2E-45 1.8E-49 373.5 23.2 214 359-589 4-227 (293)
196 cd03235 ABC_Metallic_Cations A 100.0 3.6E-45 7.7E-50 360.9 19.7 198 361-581 1-213 (213)
197 TIGR03873 F420-0_ABC_ATP propo 100.0 1.4E-44 3E-49 366.7 23.9 221 360-588 2-226 (256)
198 PRK14253 phosphate ABC transpo 100.0 1.6E-44 3.4E-49 364.9 24.0 218 359-589 3-234 (249)
199 PRK13536 nodulation factor exp 100.0 2.5E-44 5.4E-49 377.2 26.3 218 358-589 40-262 (340)
200 COG1118 CysA ABC-type sulfate/ 100.0 3.3E-45 7.2E-50 360.8 18.4 212 359-589 2-228 (345)
201 PRK15112 antimicrobial peptide 100.0 2.3E-44 4.9E-49 367.2 24.9 226 359-600 4-253 (267)
202 PRK14271 phosphate ABC transpo 100.0 3.3E-44 7.2E-49 367.3 26.2 221 358-589 20-252 (276)
203 PRK14254 phosphate ABC transpo 100.0 3.8E-44 8.3E-49 368.4 26.6 219 358-589 38-270 (285)
204 PRK11607 potG putrescine trans 100.0 1.2E-44 2.5E-49 384.1 23.5 217 358-589 18-240 (377)
205 cd03298 ABC_ThiQ_thiamine_tran 100.0 1.6E-44 3.5E-49 355.7 22.9 201 360-581 1-211 (211)
206 PRK10771 thiQ thiamine transpo 100.0 2.9E-44 6.3E-49 359.0 25.0 211 360-591 2-222 (232)
207 PRK14260 phosphate ABC transpo 100.0 1.7E-44 3.7E-49 366.6 23.5 219 358-589 6-244 (259)
208 PRK14241 phosphate transporter 100.0 1.8E-44 3.8E-49 366.3 23.4 218 359-589 4-243 (258)
209 cd03262 ABC_HisP_GlnQ_permease 100.0 1.1E-44 2.4E-49 357.3 21.0 205 360-577 1-213 (213)
210 PRK11308 dppF dipeptide transp 100.0 3.4E-44 7.3E-49 374.8 25.7 228 359-598 5-256 (327)
211 PRK11022 dppD dipeptide transp 100.0 2.8E-44 6.2E-49 375.5 25.0 224 359-595 3-251 (326)
212 cd03269 ABC_putative_ATPase Th 100.0 1.3E-44 2.8E-49 356.1 20.9 205 360-581 1-210 (210)
213 TIGR00968 3a0106s01 sulfate AB 100.0 3.8E-44 8.2E-49 359.3 24.2 215 360-589 1-221 (237)
214 PRK14272 phosphate ABC transpo 100.0 3.6E-44 7.8E-49 362.9 24.2 218 359-589 4-237 (252)
215 PRK14252 phosphate ABC transpo 100.0 5.2E-44 1.1E-48 364.3 25.4 219 357-588 14-249 (265)
216 PRK14275 phosphate ABC transpo 100.0 3.9E-44 8.4E-49 368.7 24.6 219 358-589 38-271 (286)
217 cd03300 ABC_PotA_N PotA is an 100.0 1.8E-44 3.9E-49 360.6 21.5 212 360-590 1-222 (232)
218 PRK11701 phnK phosphonate C-P 100.0 4.8E-44 1E-48 363.2 24.7 226 359-597 6-251 (258)
219 TIGR01978 sufC FeS assembly AT 100.0 2.7E-44 5.8E-49 361.8 22.5 216 360-588 1-234 (243)
220 TIGR03415 ABC_choXWV_ATP choli 100.0 2.9E-44 6.4E-49 379.7 23.8 217 366-595 31-262 (382)
221 PRK14266 phosphate ABC transpo 100.0 6.4E-44 1.4E-48 360.6 25.1 218 359-589 3-235 (250)
222 PRK14255 phosphate ABC transpo 100.0 4.2E-44 9.1E-49 362.4 23.6 218 359-589 5-237 (252)
223 PRK09984 phosphonate/organopho 100.0 7E-44 1.5E-48 362.8 25.2 231 359-599 4-251 (262)
224 COG0410 LivF ABC-type branched 100.0 7.4E-44 1.6E-48 340.4 23.6 222 359-591 3-229 (237)
225 cd03246 ABCC_Protease_Secretio 100.0 3.7E-44 8E-49 342.1 21.5 171 360-577 1-173 (173)
226 PRK09473 oppD oligopeptide tra 100.0 4.5E-44 9.7E-49 374.3 23.5 229 359-598 12-263 (330)
227 PRK14265 phosphate ABC transpo 100.0 7.1E-44 1.5E-48 364.7 24.5 219 358-589 19-259 (274)
228 PRK14263 phosphate ABC transpo 100.0 7.7E-44 1.7E-48 361.9 24.5 218 359-589 8-246 (261)
229 PRK10419 nikE nickel transport 100.0 7.4E-44 1.6E-48 363.5 24.4 227 359-597 3-250 (268)
230 PRK13547 hmuV hemin importer A 100.0 8E-44 1.7E-48 363.3 24.5 222 360-589 2-245 (272)
231 PRK15093 antimicrobial peptide 100.0 9.6E-44 2.1E-48 372.5 25.5 221 359-595 3-256 (330)
232 PRK11144 modC molybdate transp 100.0 5.2E-44 1.1E-48 377.5 23.5 211 360-590 2-220 (352)
233 cd03234 ABCG_White The White s 100.0 4.2E-44 9.2E-49 356.4 21.5 212 360-581 4-226 (226)
234 PRK14258 phosphate ABC transpo 100.0 6.7E-44 1.4E-48 362.6 23.3 219 358-589 6-246 (261)
235 TIGR01188 drrA daunorubicin re 100.0 4.7E-44 1E-48 371.1 22.5 208 368-589 2-214 (302)
236 COG4555 NatA ABC-type Na+ tran 100.0 1.1E-44 2.4E-49 336.7 15.8 217 360-589 2-223 (245)
237 PRK14264 phosphate ABC transpo 100.0 9.7E-44 2.1E-48 368.9 24.5 219 358-589 44-290 (305)
238 TIGR01277 thiQ thiamine ABC tr 100.0 9.7E-44 2.1E-48 350.6 23.3 202 360-582 1-212 (213)
239 PRK14246 phosphate ABC transpo 100.0 2.3E-43 4.9E-48 357.6 25.7 227 358-597 9-251 (257)
240 cd03299 ABC_ModC_like Archeal 100.0 1.3E-43 2.9E-48 354.9 23.2 210 360-589 1-220 (235)
241 PRK11248 tauB taurine transpor 100.0 2.1E-43 4.5E-48 357.5 23.3 206 360-583 2-215 (255)
242 TIGR03740 galliderm_ABC gallid 100.0 2.1E-43 4.5E-48 350.8 22.8 205 360-585 1-210 (223)
243 TIGR02982 heterocyst_DevA ABC 100.0 2.7E-43 5.9E-48 349.2 23.2 206 360-577 2-219 (220)
244 PRK10418 nikD nickel transport 100.0 3.9E-43 8.5E-48 355.6 24.7 223 359-601 4-245 (254)
245 TIGR02142 modC_ABC molybdenum 100.0 3.6E-43 7.8E-48 371.7 24.7 212 364-590 4-223 (354)
246 COG1137 YhbG ABC-type (unclass 100.0 2.6E-44 5.6E-49 333.8 13.0 223 359-590 4-230 (243)
247 TIGR02323 CP_lyasePhnK phospho 100.0 8.5E-43 1.9E-47 353.0 24.6 226 359-597 3-248 (253)
248 PRK15056 manganese/iron transp 100.0 6.7E-43 1.4E-47 357.3 23.6 210 359-588 6-230 (272)
249 cd03229 ABC_Class3 This class 100.0 6.3E-43 1.4E-47 335.1 21.3 172 360-576 1-178 (178)
250 cd03228 ABCC_MRP_Like The MRP 100.0 6.4E-43 1.4E-47 332.9 20.9 170 360-576 1-171 (171)
251 cd03230 ABC_DR_subfamily_A Thi 100.0 9E-43 2E-47 332.5 21.5 170 360-577 1-173 (173)
252 cd03297 ABC_ModC_molybdenum_tr 100.0 9.2E-43 2E-47 343.9 21.9 202 364-581 5-214 (214)
253 COG4175 ProV ABC-type proline/ 100.0 6.4E-43 1.4E-47 344.8 19.6 215 359-589 4-255 (386)
254 cd03217 ABC_FeS_Assembly ABC-t 100.0 2.4E-42 5.3E-47 337.2 23.3 185 360-587 1-192 (200)
255 PRK09580 sufC cysteine desulfu 100.0 2.6E-42 5.6E-47 348.5 23.9 224 360-587 2-234 (248)
256 PRK09544 znuC high-affinity zi 100.0 3.9E-42 8.4E-47 347.1 24.8 208 359-597 4-217 (251)
257 cd03223 ABCD_peroxisomal_ALDP 100.0 2E-42 4.4E-47 327.7 20.9 164 360-576 1-164 (166)
258 CHL00131 ycf16 sulfate ABC tra 100.0 4E-42 8.7E-47 347.9 24.5 218 359-586 7-239 (252)
259 cd03213 ABCG_EPDR ABCG transpo 100.0 1.9E-42 4.1E-47 336.3 21.0 181 359-581 3-194 (194)
260 cd03232 ABC_PDR_domain2 The pl 100.0 1.6E-42 3.4E-47 336.4 20.2 180 359-581 3-192 (192)
261 cd03233 ABC_PDR_domain1 The pl 100.0 2.5E-42 5.5E-47 337.6 21.6 189 359-581 3-202 (202)
262 COG0411 LivG ABC-type branched 100.0 8.6E-43 1.9E-47 335.6 17.8 221 360-590 5-241 (250)
263 TIGR03608 L_ocin_972_ABC putat 100.0 1.3E-42 2.9E-47 340.6 19.6 198 362-572 1-206 (206)
264 PRK03695 vitamin B12-transport 100.0 6E-42 1.3E-46 345.6 24.0 219 361-598 2-231 (248)
265 cd03214 ABC_Iron-Siderophores_ 100.0 2.6E-42 5.7E-47 331.4 20.1 177 361-581 1-180 (180)
266 COG0444 DppD ABC-type dipeptid 100.0 1E-41 2.2E-46 341.9 24.7 226 360-598 2-255 (316)
267 cd03215 ABC_Carb_Monos_II This 100.0 3.3E-42 7E-47 331.4 20.4 172 359-577 4-182 (182)
268 COG1123 ATPase components of v 100.0 5.1E-42 1.1E-46 367.6 23.4 230 359-598 280-530 (539)
269 PRK15439 autoinducer 2 ABC tra 100.0 1.4E-41 3E-46 377.1 26.8 215 359-588 11-229 (510)
270 cd03231 ABC_CcmA_heme_exporter 100.0 8.6E-42 1.9E-46 333.7 22.2 195 360-572 1-198 (201)
271 PRK13549 xylose transporter AT 100.0 6.8E-42 1.5E-46 379.6 24.3 216 359-587 5-231 (506)
272 TIGR01184 ntrCD nitrate transp 100.0 1E-41 2.2E-46 340.1 23.1 195 376-587 1-203 (230)
273 PRK13538 cytochrome c biogenes 100.0 1E-41 2.2E-46 334.0 21.4 195 360-572 2-202 (204)
274 PRK10261 glutathione transport 100.0 1.2E-41 2.7E-46 385.2 25.3 228 359-598 313-565 (623)
275 PRK09700 D-allose transporter 100.0 1.6E-41 3.4E-46 377.1 25.1 217 359-588 5-234 (510)
276 PRK10762 D-ribose transporter 100.0 1.4E-41 3.1E-46 376.6 24.3 216 359-587 4-229 (501)
277 cd03267 ABC_NatA_like Similar 100.0 1.8E-41 3.9E-46 339.7 21.6 196 373-581 34-236 (236)
278 TIGR02770 nickel_nikD nickel i 100.0 2E-41 4.4E-46 338.0 21.5 207 375-595 1-223 (230)
279 PRK10982 galactose/methyl gala 100.0 2E-41 4.2E-46 374.7 23.5 213 362-587 1-222 (491)
280 COG4619 ABC-type uncharacteriz 100.0 6.9E-42 1.5E-46 308.9 15.4 193 372-579 15-214 (223)
281 PRK11288 araG L-arabinose tran 100.0 3.6E-41 7.8E-46 373.3 24.7 212 359-583 4-224 (501)
282 cd03216 ABC_Carb_Monos_I This 100.0 5.7E-41 1.2E-45 316.8 21.9 159 360-579 1-162 (163)
283 PRK13540 cytochrome c biogenes 100.0 2.8E-41 6.1E-46 329.8 20.4 194 360-571 2-198 (200)
284 COG4181 Predicted ABC-type tra 100.0 1.7E-41 3.6E-46 307.3 16.8 209 359-580 6-227 (228)
285 PRK10938 putative molybdenum t 100.0 4E-41 8.7E-46 372.2 23.4 212 359-589 3-225 (490)
286 KOG0060|consensus 100.0 5.8E-38 1.3E-42 330.8 45.5 417 142-574 186-641 (659)
287 COG4559 ABC-type hemin transpo 100.0 7E-41 1.5E-45 313.7 20.3 214 360-590 2-232 (259)
288 PRK13539 cytochrome c biogenes 100.0 9.6E-41 2.1E-45 327.8 21.5 194 360-574 3-200 (207)
289 PRK13543 cytochrome c biogenes 100.0 1.3E-40 2.9E-45 328.5 21.9 196 359-574 11-212 (214)
290 TIGR02633 xylG D-xylose ABC tr 100.0 1.3E-40 2.8E-45 369.1 24.4 214 360-586 2-228 (500)
291 PRK15134 microcin C ABC transp 100.0 4.9E-41 1.1E-45 374.7 21.2 218 359-589 275-516 (529)
292 COG1123 ATPase components of v 100.0 6.9E-41 1.5E-45 358.9 21.3 221 359-595 5-252 (539)
293 TIGR01189 ccmA heme ABC export 100.0 7.9E-41 1.7E-45 326.2 19.7 193 360-571 1-197 (198)
294 PRK10261 glutathione transport 100.0 8.7E-41 1.9E-45 378.2 22.3 220 358-589 11-259 (623)
295 PRK15134 microcin C ABC transp 100.0 3.7E-40 8E-45 367.6 26.3 219 359-589 5-247 (529)
296 COG4608 AppF ABC-type oligopep 100.0 1.2E-40 2.7E-45 327.5 18.4 191 359-595 4-207 (268)
297 TIGR03269 met_CoM_red_A2 methy 100.0 1.5E-40 3.3E-45 370.1 21.6 218 359-588 279-517 (520)
298 TIGR01166 cbiO cobalt transpor 100.0 9.8E-41 2.1E-45 323.4 17.1 180 371-562 3-189 (190)
299 TIGR02324 CP_lyasePhnL phospho 100.0 2.3E-40 5.1E-45 329.1 20.2 201 360-572 2-222 (224)
300 TIGR03771 anch_rpt_ABC anchore 100.0 1.9E-40 4.1E-45 329.4 19.4 195 381-598 1-210 (223)
301 PRK10535 macrolide transporter 100.0 4.8E-40 1E-44 373.5 25.2 217 359-587 4-231 (648)
302 COG1129 MglA ABC-type sugar tr 100.0 5E-40 1.1E-44 350.1 23.6 211 359-582 8-228 (500)
303 PLN03211 ABC transporter G-25; 100.0 1.3E-40 2.8E-45 376.7 20.2 210 364-588 73-296 (659)
304 TIGR03269 met_CoM_red_A2 methy 100.0 2.5E-40 5.4E-45 368.4 21.5 216 360-588 1-258 (520)
305 PRK13546 teichoic acids export 100.0 1.9E-39 4.2E-44 329.4 25.8 200 373-597 37-241 (264)
306 PRK13549 xylose transporter AT 100.0 5.6E-40 1.2E-44 364.2 23.8 217 359-587 259-493 (506)
307 TIGR01257 rim_protein retinal- 100.0 7.6E-38 1.6E-42 379.9 43.7 220 358-590 1936-2161(2272)
308 PRK13545 tagH teichoic acids e 100.0 2E-39 4.3E-44 349.0 26.7 215 359-598 21-242 (549)
309 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 100.0 4.8E-40 1E-44 326.7 19.6 197 360-581 23-224 (224)
310 TIGR01257 rim_protein retinal- 100.0 1.5E-39 3.3E-44 394.6 27.3 219 358-589 927-1150(2272)
311 PRK09700 D-allose transporter 100.0 5E-40 1.1E-44 365.1 19.4 212 359-585 265-495 (510)
312 COG3845 ABC-type uncharacteriz 100.0 2.4E-39 5.1E-44 338.0 22.4 215 358-582 3-223 (501)
313 PRK13541 cytochrome c biogenes 100.0 1.3E-39 2.9E-44 316.7 19.1 188 360-569 2-192 (195)
314 COG4598 HisP ABC-type histidin 100.0 3.8E-40 8.2E-45 300.6 13.7 218 358-589 5-242 (256)
315 COG4172 ABC-type uncharacteriz 100.0 6.4E-39 1.4E-43 324.9 24.1 221 358-595 275-524 (534)
316 TIGR02633 xylG D-xylose ABC tr 100.0 1.9E-39 4.1E-44 359.8 22.2 220 359-585 257-489 (500)
317 TIGR00955 3a01204 The Eye Pigm 100.0 7.7E-40 1.7E-44 370.2 19.5 205 372-587 37-255 (617)
318 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 4.6E-39 1E-43 360.2 24.9 216 359-588 4-248 (552)
319 PRK11819 putative ABC transpor 100.0 3.9E-39 8.5E-44 360.9 23.9 216 359-588 6-250 (556)
320 COG4148 ModC ABC-type molybdat 100.0 1.2E-39 2.6E-44 316.5 16.4 197 378-590 16-220 (352)
321 PRK10762 D-ribose transporter 100.0 4.3E-39 9.2E-44 356.8 22.1 211 359-587 257-483 (501)
322 COG4604 CeuD ABC-type enteroch 100.0 1.5E-39 3.3E-44 301.1 13.5 214 360-590 2-227 (252)
323 PRK15064 ABC transporter ATP-b 100.0 1.3E-38 2.8E-43 355.3 23.2 208 360-588 2-242 (530)
324 COG4525 TauB ABC-type taurine 100.0 6.2E-39 1.4E-43 296.5 16.9 206 360-582 4-218 (259)
325 COG4161 ArtP ABC-type arginine 100.0 2.9E-39 6.2E-44 289.9 14.0 214 359-589 2-231 (242)
326 PRK15064 ABC transporter ATP-b 100.0 1.7E-38 3.7E-43 354.3 23.4 204 358-591 318-528 (530)
327 PRK11288 araG L-arabinose tran 100.0 2.3E-38 5E-43 350.9 23.5 212 359-587 257-484 (501)
328 cd03237 ABC_RNaseL_inhibitor_d 100.0 1.5E-38 3.3E-43 319.7 19.9 193 367-587 1-206 (246)
329 cd03236 ABC_RNaseL_inhibitor_d 100.0 1.2E-38 2.6E-43 321.8 17.8 201 363-581 4-220 (255)
330 PRK15177 Vi polysaccharide exp 100.0 2.9E-38 6.4E-43 311.3 20.2 192 375-594 2-198 (213)
331 TIGR00956 3a01205 Pleiotropic 100.0 1.7E-38 3.7E-43 384.9 22.2 213 359-585 759-990 (1394)
332 PRK15439 autoinducer 2 ABC tra 100.0 2.9E-38 6.2E-43 350.6 21.6 213 359-589 268-493 (510)
333 TIGR01187 potA spermidine/putr 100.0 4.7E-38 1E-42 328.9 21.2 185 391-589 1-191 (325)
334 cd03221 ABCF_EF-3 ABCF_EF-3 E 100.0 8.5E-38 1.9E-42 288.9 19.3 143 360-576 1-144 (144)
335 PRK10982 galactose/methyl gala 100.0 1.3E-37 2.8E-42 344.2 22.3 212 359-585 250-477 (491)
336 PRK10938 putative molybdenum t 100.0 8.4E-38 1.8E-42 345.8 19.0 210 358-581 259-485 (490)
337 COG4152 ABC-type uncharacteriz 100.0 2.5E-37 5.3E-42 295.5 16.8 216 359-591 2-222 (300)
338 cd00267 ABC_ATPase ABC (ATP-bi 100.0 2.3E-36 4.9E-41 283.7 20.0 154 362-576 2-157 (157)
339 PLN03073 ABC transporter F fam 100.0 1.6E-36 3.6E-41 345.1 22.7 199 358-586 507-712 (718)
340 PRK11819 putative ABC transpor 100.0 2.4E-36 5.1E-41 338.5 23.4 202 358-589 323-534 (556)
341 TIGR03719 ABC_ABC_ChvD ATP-bin 100.0 2.7E-36 6E-41 337.9 23.4 203 358-588 321-531 (552)
342 PRK10636 putative ABC transpor 100.0 2.6E-36 5.7E-41 342.1 23.0 199 359-587 312-516 (638)
343 COG1119 ModF ABC-type molybden 100.0 1.7E-36 3.6E-41 292.1 18.0 211 358-582 30-256 (257)
344 cd03222 ABC_RNaseL_inhibitor T 100.0 2.3E-36 5E-41 287.6 18.5 156 363-589 4-164 (177)
345 PRK11147 ABC transporter ATPas 100.0 4E-36 8.6E-41 341.2 23.7 204 359-588 319-528 (635)
346 COG4172 ABC-type uncharacteriz 100.0 4.3E-36 9.3E-41 304.4 20.7 226 359-597 6-257 (534)
347 PRK13409 putative ATPase RIL; 100.0 4E-36 8.7E-41 336.2 22.0 194 359-584 340-538 (590)
348 COG1101 PhnK ABC-type uncharac 100.0 1.9E-36 4.1E-41 284.5 15.6 205 372-581 18-231 (263)
349 PLN03140 ABC transporter G fam 100.0 6.1E-36 1.3E-40 361.6 24.2 211 359-584 867-1106(1470)
350 COG4167 SapF ABC-type antimicr 100.0 3.1E-36 6.7E-41 275.6 16.0 225 360-601 5-254 (267)
351 PRK10636 putative ABC transpor 100.0 2.5E-35 5.4E-40 334.2 23.9 212 360-588 2-236 (638)
352 cd03238 ABC_UvrA The excision 100.0 2.7E-35 5.9E-40 280.0 18.9 155 372-576 7-165 (176)
353 COG4674 Uncharacterized ABC-ty 100.0 2.5E-35 5.3E-40 272.8 15.1 222 359-590 5-237 (249)
354 COG0396 sufC Cysteine desulfur 100.0 1.8E-34 4E-39 274.7 20.9 223 359-598 3-245 (251)
355 PRK11147 ABC transporter ATPas 100.0 2.9E-34 6.2E-39 326.1 25.8 211 359-588 3-243 (635)
356 TIGR00956 3a01205 Pleiotropic 100.0 7.4E-35 1.6E-39 353.3 20.0 205 373-587 74-299 (1394)
357 PRK13409 putative ATPase RIL; 100.0 6.6E-35 1.4E-39 326.4 15.4 193 363-575 77-287 (590)
358 COG0488 Uup ATPase components 100.0 6.1E-34 1.3E-38 311.1 21.3 214 359-590 3-242 (530)
359 PLN03140 ABC transporter G fam 100.0 1.3E-34 2.9E-39 350.1 17.2 208 373-587 178-426 (1470)
360 COG4136 ABC-type uncharacteriz 100.0 4.7E-34 1E-38 253.5 14.0 195 359-572 2-207 (213)
361 COG4586 ABC-type uncharacteriz 100.0 3.6E-34 7.8E-39 278.0 13.8 212 374-596 38-254 (325)
362 PLN03073 ABC transporter F fam 100.0 1.9E-33 4.2E-38 320.0 20.5 225 358-588 176-431 (718)
363 KOG0061|consensus 100.0 1.5E-33 3.2E-38 316.1 18.9 219 358-587 24-259 (613)
364 COG1134 TagH ABC-type polysacc 100.0 8.3E-33 1.8E-37 266.9 19.7 187 373-588 40-236 (249)
365 COG4107 PhnK ABC-type phosphon 100.0 8.2E-33 1.8E-37 251.3 16.4 231 359-598 6-252 (258)
366 PF00005 ABC_tran: ABC transpo 100.0 1.4E-33 3.1E-38 258.2 10.6 136 376-530 1-137 (137)
367 KOG0064|consensus 100.0 5.2E-29 1.1E-33 259.6 41.0 501 38-572 119-681 (728)
368 COG0488 Uup ATPase components 100.0 1.7E-31 3.6E-36 292.0 20.8 203 358-589 320-526 (530)
369 cd03270 ABC_UvrA_I The excisio 100.0 1.8E-31 3.9E-36 265.3 18.3 192 372-581 7-226 (226)
370 cd03271 ABC_UvrA_II The excisi 100.0 1.8E-30 3.9E-35 261.3 17.1 193 375-583 10-261 (261)
371 COG4133 CcmA ABC-type transpor 100.0 2.4E-30 5.1E-35 239.2 13.8 187 360-564 3-194 (209)
372 KOG0059|consensus 100.0 5.6E-30 1.2E-34 299.1 18.0 219 358-592 563-791 (885)
373 cd03278 ABC_SMC_barmotin Barmo 100.0 2.9E-30 6.2E-35 251.0 12.2 164 377-574 14-190 (197)
374 COG4778 PhnL ABC-type phosphon 100.0 5.8E-30 1.3E-34 232.0 11.0 199 359-573 4-226 (235)
375 cd03272 ABC_SMC3_euk Eukaryoti 100.0 4E-29 8.6E-34 251.5 15.3 191 359-573 3-234 (243)
376 COG4138 BtuD ABC-type cobalami 100.0 8.3E-30 1.8E-34 232.0 7.6 210 360-590 4-223 (248)
377 cd03279 ABC_sbcCD SbcCD and ot 100.0 3E-29 6.5E-34 247.3 12.1 193 359-577 5-211 (213)
378 cd03273 ABC_SMC2_euk Eukaryoti 99.9 1.7E-27 3.7E-32 240.7 13.4 202 359-573 5-242 (251)
379 PF00664 ABC_membrane: ABC tra 99.9 1E-23 2.2E-28 211.8 38.5 272 39-313 1-274 (275)
380 cd03240 ABC_Rad50 The catalyti 99.9 3.6E-27 7.9E-32 230.6 12.8 163 379-574 16-197 (204)
381 COG1129 MglA ABC-type sugar tr 99.9 2E-26 4.3E-31 246.2 19.4 216 359-585 263-487 (500)
382 PRK00635 excinuclease ABC subu 99.9 4.8E-26 1.1E-30 273.3 21.7 213 359-590 600-908 (1809)
383 cd03274 ABC_SMC4_euk Eukaryoti 99.9 4.2E-27 9.1E-32 231.4 8.6 184 359-574 5-204 (212)
384 PRK00349 uvrA excinuclease ABC 99.9 7.5E-26 1.6E-30 261.8 19.8 106 489-594 817-933 (943)
385 KOG0927|consensus 99.9 8.8E-27 1.9E-31 244.8 9.8 200 358-585 388-593 (614)
386 KOG0065|consensus 99.9 5.1E-26 1.1E-30 260.7 8.8 197 372-583 803-1016(1391)
387 cd03275 ABC_SMC1_euk Eukaryoti 99.9 1.9E-25 4.1E-30 225.2 10.4 203 359-574 3-233 (247)
388 COG3845 ABC-type uncharacteriz 99.9 2.9E-24 6.2E-29 225.2 19.1 217 358-585 256-489 (501)
389 TIGR00630 uvra excinuclease AB 99.9 1.3E-23 2.8E-28 242.8 23.7 98 489-586 815-923 (924)
390 KOG0927|consensus 99.9 7.2E-24 1.6E-28 223.0 19.0 228 357-589 73-310 (614)
391 COG4170 SapD ABC-type antimicr 99.9 2.3E-24 5E-29 201.8 13.1 223 360-595 4-256 (330)
392 KOG0062|consensus 99.9 3.1E-23 6.7E-28 217.1 16.7 194 357-579 360-559 (582)
393 KOG0066|consensus 99.9 2.5E-23 5.3E-28 212.7 13.0 199 358-585 585-788 (807)
394 KOG0062|consensus 99.9 8.3E-24 1.8E-28 221.4 8.9 202 357-590 78-287 (582)
395 cd03276 ABC_SMC6_euk Eukaryoti 99.9 2.4E-23 5.3E-28 202.6 9.5 172 376-576 12-192 (198)
396 COG1245 Predicted ATPase, RNas 99.9 2.2E-22 4.8E-27 207.6 15.0 178 367-573 343-530 (591)
397 cd03239 ABC_SMC_head The struc 99.9 1.9E-21 4.2E-26 185.9 12.8 84 480-574 84-172 (178)
398 KOG2355|consensus 99.9 5.2E-21 1.1E-25 178.9 15.1 210 357-586 11-235 (291)
399 cd03280 ABC_MutS2 MutS2 homolo 99.8 6.4E-21 1.4E-25 186.2 12.5 145 376-581 17-172 (200)
400 COG0178 UvrA Excinuclease ATPa 99.8 3.5E-20 7.5E-25 203.3 16.3 109 489-597 809-928 (935)
401 cd01128 rho_factor Transcripti 99.8 1.6E-20 3.4E-25 188.1 12.3 197 380-600 10-229 (249)
402 KOG0065|consensus 99.8 1.3E-20 2.8E-25 216.6 13.0 202 373-587 128-350 (1391)
403 cd03241 ABC_RecN RecN ATPase i 99.8 4.7E-20 1E-24 189.0 15.3 76 501-576 170-249 (276)
404 cd03277 ABC_SMC5_euk Eukaryoti 99.8 2.6E-20 5.7E-25 183.2 11.9 180 377-576 15-211 (213)
405 PRK00635 excinuclease ABC subu 99.8 8.6E-20 1.9E-24 219.9 17.0 215 375-594 1505-1802(1809)
406 COG2401 ABC-type ATPase fused 99.8 3.8E-19 8.2E-24 181.8 14.9 178 374-578 397-588 (593)
407 COG1245 Predicted ATPase, RNas 99.8 1.1E-19 2.4E-24 187.8 10.8 188 364-573 79-287 (591)
408 cd03227 ABC_Class2 ABC-type Cl 99.8 3.2E-19 6.9E-24 168.2 10.6 135 380-574 15-155 (162)
409 cd03285 ABC_MSH2_euk MutS2 hom 99.8 1E-18 2.2E-23 173.0 10.6 153 372-582 16-175 (222)
410 cd03242 ABC_RecF RecF is a rec 99.8 1.3E-17 2.8E-22 170.4 15.5 75 500-577 182-269 (270)
411 TIGR00630 uvra excinuclease AB 99.7 1.8E-17 3.9E-22 192.1 14.6 100 490-589 475-584 (924)
412 PRK00349 uvrA excinuclease ABC 99.7 1.8E-17 3.9E-22 192.4 14.2 101 489-589 476-586 (943)
413 cd03243 ABC_MutS_homologs The 99.7 1.7E-17 3.8E-22 162.2 11.4 153 379-586 22-177 (202)
414 cd03283 ABC_MutS-like MutS-lik 99.7 2.3E-17 4.9E-22 160.7 9.5 144 373-572 14-163 (199)
415 cd00820 PEPCK_HprK Phosphoenol 99.7 2.3E-17 5.1E-22 142.3 6.0 76 373-456 2-77 (107)
416 TIGR02858 spore_III_AA stage I 99.7 4.5E-16 9.7E-21 157.7 12.2 141 387-587 112-268 (270)
417 cd03282 ABC_MSH4_euk MutS4 hom 99.6 1.1E-15 2.4E-20 149.2 11.8 140 372-566 15-157 (204)
418 KOG0066|consensus 99.6 1.7E-16 3.7E-21 162.9 5.8 210 359-584 264-495 (807)
419 TIGR00606 rad50 rad50. This fa 99.6 9.9E-16 2.1E-20 187.1 13.4 118 445-572 1153-1288(1311)
420 KOG0063|consensus 99.6 8.1E-15 1.7E-19 150.8 14.1 200 367-593 343-553 (592)
421 cd03284 ABC_MutS1 MutS1 homolo 99.6 1.9E-15 4.2E-20 149.1 9.3 155 373-586 18-179 (216)
422 PRK00064 recF recombination pr 99.6 6.4E-14 1.4E-18 148.8 16.3 76 500-577 272-359 (361)
423 PF02463 SMC_N: RecF/RecN/SMC 99.5 1.5E-14 3.3E-19 143.2 8.5 72 501-572 136-211 (220)
424 PRK07721 fliI flagellum-specif 99.5 8E-13 1.7E-17 142.4 16.7 177 373-585 146-340 (438)
425 PHA02562 46 endonuclease subun 99.5 4.8E-14 1E-18 159.1 6.8 87 490-577 451-555 (562)
426 cd03281 ABC_MSH5_euk MutS5 hom 99.5 4.2E-13 9.1E-18 132.1 12.4 135 374-566 17-160 (213)
427 smart00534 MUTSac ATPase domai 99.4 1.5E-13 3.2E-18 132.6 7.4 69 497-568 57-130 (185)
428 TIGR01069 mutS2 MutS2 family p 99.4 1.4E-12 3.1E-17 150.0 15.2 145 359-564 295-449 (771)
429 TIGR00634 recN DNA repair prot 99.4 9.5E-13 2E-17 147.9 9.6 77 500-576 439-519 (563)
430 PTZ00132 GTP-binding nuclear p 99.3 1.6E-12 3.5E-17 128.3 7.9 44 505-548 156-204 (215)
431 PRK10869 recombination and rep 99.3 2.5E-12 5.5E-17 143.4 10.3 76 501-576 430-509 (553)
432 TIGR00611 recf recF protein. A 99.3 1.9E-11 4.1E-16 129.9 13.5 63 500-564 274-345 (365)
433 COG0178 UvrA Excinuclease ATPa 99.3 4.3E-11 9.2E-16 132.6 15.2 103 489-591 468-580 (935)
434 PRK13695 putative NTPase; Prov 99.3 1.2E-11 2.7E-16 117.9 9.2 95 497-598 74-170 (174)
435 cd03287 ABC_MSH3_euk MutS3 hom 99.3 2E-11 4.2E-16 120.7 10.6 138 373-566 18-160 (222)
436 PRK14079 recF recombination pr 99.3 3.7E-11 8E-16 127.1 12.8 76 500-580 262-346 (349)
437 PRK00409 recombination and DNA 99.3 6.8E-11 1.5E-15 136.6 15.6 79 498-578 387-468 (782)
438 KOG0063|consensus 99.3 8.7E-12 1.9E-16 128.8 7.2 173 384-573 98-287 (592)
439 PRK08533 flagellar accessory p 99.2 1.9E-10 4E-15 114.7 13.0 157 360-573 8-184 (230)
440 TIGR02788 VirB11 P-type DNA tr 99.2 3.7E-11 8.1E-16 125.1 7.9 143 379-587 137-280 (308)
441 PRK01156 chromosome segregatio 99.1 1.2E-10 2.6E-15 138.5 10.4 76 498-573 798-883 (895)
442 TIGR00618 sbcc exonuclease Sbc 99.1 1.4E-10 3.1E-15 139.5 10.8 78 498-575 947-1036(1042)
443 PRK06793 fliI flagellum-specif 99.1 3.8E-10 8.2E-15 120.9 12.3 165 359-580 130-303 (432)
444 cd01124 KaiC KaiC is a circadi 99.1 4.5E-10 9.7E-15 108.0 11.8 84 490-573 60-163 (187)
445 PRK03918 chromosome segregatio 99.1 1.7E-10 3.6E-15 137.2 9.8 76 499-574 786-868 (880)
446 TIGR03238 dnd_assoc_3 dnd syst 99.1 5.6E-11 1.2E-15 126.9 5.0 67 374-443 20-87 (504)
447 PRK13830 conjugal transfer pro 99.1 2E-09 4.4E-14 125.7 16.2 67 516-582 649-727 (818)
448 PF06472 ABC_membrane_2: ABC t 99.1 1.2E-06 2.6E-11 90.2 34.4 230 39-274 29-263 (281)
449 cd03286 ABC_MSH6_euk MutS6 hom 99.0 1.2E-09 2.7E-14 107.6 11.6 138 373-566 17-159 (218)
450 TIGR02168 SMC_prok_B chromosom 99.0 2.7E-10 6E-15 139.3 8.1 75 498-572 1086-1164(1179)
451 PF13304 AAA_21: AAA domain; P 99.0 7.3E-10 1.6E-14 110.5 8.4 64 500-563 235-302 (303)
452 PF13748 ABC_membrane_3: ABC t 99.0 7.7E-07 1.7E-11 86.7 28.5 173 29-217 2-174 (237)
453 cd01120 RecA-like_NTPases RecA 99.0 3.4E-09 7.3E-14 98.8 10.9 129 388-563 1-140 (165)
454 TIGR02169 SMC_prok_A chromosom 99.0 1.2E-09 2.6E-14 133.7 9.1 75 500-574 1073-1151(1164)
455 PRK11098 microcin B17 transpor 98.9 1.2E-05 2.6E-10 85.8 37.8 186 141-334 191-389 (409)
456 cd01131 PilT Pilus retraction 98.9 1.7E-09 3.8E-14 105.3 7.8 56 511-572 66-121 (198)
457 smart00382 AAA ATPases associa 98.9 5E-08 1.1E-12 87.6 16.3 117 385-559 1-125 (148)
458 PRK12369 putative transporter; 98.9 1.8E-05 4E-10 82.7 37.3 278 43-334 23-315 (326)
459 PRK10246 exonuclease subunit S 98.9 4.6E-09 1E-13 126.0 10.4 78 497-574 945-1032(1047)
460 PRK10733 hflB ATP-dependent me 98.9 9.5E-10 2.1E-14 125.3 3.9 172 208-411 31-210 (644)
461 PRK00300 gmk guanylate kinase; 98.9 5.4E-09 1.2E-13 102.2 8.7 69 384-458 3-83 (205)
462 PRK06067 flagellar accessory p 98.9 2.5E-08 5.4E-13 99.8 13.3 74 501-574 100-187 (234)
463 COG3910 Predicted ATPase [Gene 98.9 4E-08 8.7E-13 91.9 12.9 84 501-586 129-214 (233)
464 PRK02224 chromosome segregatio 98.8 5.8E-09 1.3E-13 124.0 9.0 76 500-575 780-869 (880)
465 PRK06002 fliI flagellum-specif 98.8 6.8E-09 1.5E-13 111.4 7.7 86 357-443 137-229 (450)
466 TIGR00767 rho transcription te 98.7 2.8E-08 6.1E-13 104.8 8.6 57 357-413 128-195 (415)
467 TIGR02655 circ_KaiC circadian 98.7 8.6E-09 1.9E-13 113.9 2.7 156 382-573 17-190 (484)
468 PRK13891 conjugal transfer pro 98.7 8E-07 1.7E-11 104.6 19.2 54 512-565 680-735 (852)
469 PRK07196 fliI flagellum-specif 98.6 2.7E-08 5.8E-13 106.9 4.8 82 373-455 143-234 (434)
470 cd01130 VirB11-like_ATPase Typ 98.5 9.9E-08 2.1E-12 92.1 5.3 66 375-443 14-79 (186)
471 TIGR02524 dot_icm_DotB Dot/Icm 98.5 2.3E-07 5.1E-12 98.2 7.9 75 384-460 132-214 (358)
472 TIGR01420 pilT_fam pilus retra 98.5 3E-07 6.5E-12 97.3 8.6 121 383-570 119-240 (343)
473 TIGR01026 fliI_yscN ATPase Fli 98.5 1.3E-06 2.9E-11 94.6 12.5 182 372-585 150-345 (440)
474 PRK06995 flhF flagellar biosyn 98.4 2E-07 4.4E-12 101.4 5.7 62 376-456 246-307 (484)
475 cd01125 repA Hexameric Replica 98.4 4.3E-07 9.4E-12 91.2 7.6 44 516-560 108-159 (239)
476 PRK01889 GTPase RsgA; Reviewed 98.4 1.5E-07 3.3E-12 99.9 4.4 82 375-459 184-265 (356)
477 PRK08149 ATP synthase SpaL; Va 98.4 3E-07 6.5E-12 98.7 5.5 69 373-442 139-214 (428)
478 PF09818 ABC_ATPase: Predicted 98.4 4.4E-06 9.5E-11 88.5 13.4 173 365-579 227-418 (448)
479 PRK10078 ribose 1,5-bisphospho 98.4 4.9E-07 1.1E-11 87.2 5.6 56 385-443 1-56 (186)
480 COG0419 SbcC ATPase involved i 98.3 1.4E-06 3.1E-11 103.7 9.6 78 498-575 812-898 (908)
481 cd02023 UMPK Uridine monophosp 98.3 6.2E-07 1.3E-11 87.3 5.4 107 388-534 1-113 (198)
482 PLN03210 Resistant to P. syrin 98.3 2.6E-06 5.5E-11 104.1 11.4 43 379-421 200-243 (1153)
483 PRK09825 idnK D-gluconate kina 98.3 6.7E-07 1.4E-11 85.5 4.7 65 385-455 2-68 (176)
484 TIGR02680 conserved hypothetic 98.3 1.1E-06 2.5E-11 107.8 7.7 63 498-562 1244-1318(1353)
485 PRK13898 type IV secretion sys 98.3 5E-06 1.1E-10 97.7 12.6 60 515-574 638-709 (800)
486 TIGR00235 udk uridine kinase. 98.2 6.9E-07 1.5E-11 87.7 3.6 29 384-412 4-32 (207)
487 TIGR03881 KaiC_arch_4 KaiC dom 98.2 1.2E-06 2.6E-11 87.2 5.3 57 382-442 16-76 (229)
488 TIGR02322 phosphon_PhnN phosph 98.2 2.4E-06 5.2E-11 81.7 6.5 62 386-448 1-78 (179)
489 cd00009 AAA The AAA+ (ATPases 98.2 1E-05 2.2E-10 73.2 10.0 54 507-561 72-131 (151)
490 PLN02796 D-glycerate 3-kinase 98.2 7.1E-07 1.5E-11 92.8 2.5 62 373-434 79-151 (347)
491 PRK05399 DNA mismatch repair p 98.2 9E-06 2E-10 95.6 11.4 66 502-568 667-738 (854)
492 PRK07594 type III secretion sy 98.1 2E-06 4.4E-11 92.5 5.1 66 358-424 128-193 (433)
493 TIGR00101 ureG urease accessor 98.1 4.8E-06 1E-10 81.2 7.2 57 388-445 3-59 (199)
494 PRK15494 era GTPase Era; Provi 98.1 1.6E-06 3.5E-11 91.6 3.8 55 356-410 15-76 (339)
495 PRK13873 conjugal transfer ATP 98.1 3.8E-05 8.2E-10 90.5 15.6 62 514-575 630-703 (811)
496 TIGR03263 guanyl_kin guanylate 98.1 2.4E-06 5.3E-11 81.6 4.0 63 386-453 1-75 (180)
497 cd01136 ATPase_flagellum-secre 98.1 5E-06 1.1E-10 86.5 6.5 56 368-424 52-107 (326)
498 COG1195 RecF Recombinational D 98.1 4.9E-05 1.1E-09 79.6 13.7 77 500-578 274-362 (363)
499 TIGR02903 spore_lon_C ATP-depe 98.1 8.1E-06 1.8E-10 92.7 8.7 39 386-424 175-221 (615)
500 PRK00454 engB GTP-binding prot 98.1 4.7E-06 1E-10 80.5 5.8 52 494-549 140-194 (196)
No 1
>KOG0058|consensus
Probab=100.00 E-value=6.1e-110 Score=900.50 Aligned_cols=570 Identities=30% Similarity=0.411 Sum_probs=521.8
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLF 103 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 103 (604)
.++.++.+.+|+++++..++++.+++++..++.|.+.+.++|.+..+.+. . .........+..+.++.+++.+++.++
T Consensus 134 ~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~-~-~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 134 LLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS-A-DALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch-H-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56678899999999999999999999999999999999999998762211 1 100111122222222236666666654
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 104 KHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYM 183 (604)
Q Consensus 104 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 183 (604)
....++++..++|.++|+++++++.+|||++.+|++++|++.|+..+.+.+...+...+-+++..++.+++|+++||.|
T Consensus 212 -~~~a~~rv~~rlR~~lF~sil~QdiaFFD~nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~L 290 (716)
T KOG0058|consen 212 -LQYAGERVVARLRTDLFRSLLRQDIAFFDENKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWRL 290 (716)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHhhhhhhhccCCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHH
Confidence 3567889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 184 LFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRL 263 (604)
Q Consensus 184 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 263 (604)
+++.++.+|+..++.+++++..++..++.+++.++.++...|.+++++|||+|+.|+.|.++|.+..++..+...|....
T Consensus 291 tlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~a 370 (716)
T KOG0058|consen 291 TLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAVA 370 (716)
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy13349 264 ISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYK 343 (604)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (604)
...+....++...+..+.++++|++++..|.+|.|.+.+|+.|...+...+..+...+.++++..+..++.++.+++.|.
T Consensus 371 ~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P~ 450 (716)
T KOG0058|consen 371 YGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKPR 450 (716)
T ss_pred hhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCCC
Confidence 88888888889999999999999999999999999999999999999888888888889999999999999999999887
Q ss_pred cccCcccccccccCceEEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 344 IVDNYNAKRLVVTNGKIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 344 ~~~~~~~~~~~~~~~~i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
.... +........+.|+|+||+|+||.. .++|+|+||+|+|||++|+||||||||||++++|.+||+|++|+|.+||
T Consensus 451 i~~~-G~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG 529 (716)
T KOG0058|consen 451 IPLT-GTLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDG 529 (716)
T ss_pred CCCC-CccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECC
Confidence 6543 321111356899999999999974 4699999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCC
Q psy13349 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIK 501 (604)
Q Consensus 422 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~ 501 (604)
+|++++++.+||++||+|.|||.||++||+|||.||.+++++||+..|++.|++|+||.++|+ ||||.|||+|.+
T Consensus 530 ~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~-----gY~T~VGEkG~q 604 (716)
T KOG0058|consen 530 VPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPD-----GYNTVVGEKGSQ 604 (716)
T ss_pred eehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcc-----ccccccCCcccc
Confidence 999999999999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEec
Q psy13349 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 502 LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g 581 (604)
|||||||||||||||++||.||||||+|||||.++|..|++++.+..+++|||+|+|||+++++||+|+|+++|+++|.|
T Consensus 605 LSGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 605 LSGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMG 684 (716)
T ss_pred ccchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhcC-cHHHHHHHHhhc
Q psy13349 582 SHLDLLKKN-GLYSRLWRHQNK 602 (604)
Q Consensus 582 ~~~~l~~~~-~~y~~l~~~q~~ 602 (604)
+|+||++.. |.|++|.++|..
T Consensus 685 ~h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 685 THDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred cHHHHhhCcccHHHHHHHHhcc
Confidence 999999986 899999998864
No 2
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=100.00 E-value=5e-103 Score=878.78 Aligned_cols=582 Identities=29% Similarity=0.410 Sum_probs=521.4
Q ss_pred hcCCCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHH
Q psy13349 8 ILYPFPNILIKPPPYKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLG 87 (604)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~ 87 (604)
.++|.+.......++....|++..+.++++.+.-.++.+++..+++++.|++++.++|.+....+... .+.+.+.+
T Consensus 125 ~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~~t----L~vl~ig~ 200 (709)
T COG2274 125 LLAPTASRKFKDIPPFGLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRST----LTVLAIGL 200 (709)
T ss_pred EEecccccccccccccchHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCchhH----HHHHHHHH
Confidence 35666653333344456788999999999999999999999999999999999999999886654322 11222222
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q psy13349 88 FILISS-TVFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFIT 166 (604)
Q Consensus 88 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~ 166 (604)
++..+. .++..++.++. ...+.++..++..++|+|++++|+.||+++++|++++|+ ++.++++++++......+..+
T Consensus 201 ~~~~l~~~~l~~lr~~~~-~~~~~rld~~l~~~~~~hll~Lpl~~f~~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~ 278 (709)
T COG2274 201 LLAALFEALLRLLRTYLI-AHLGKRLDLELSGRFFRHLLRLPLSYFEKRSVGEIISRV-RELEQIREFLTGSILTLIIDL 278 (709)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHcCcHHHccCCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 333333 67777777654 356778999999999999999999999999999999998 578999999988887777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHH
Q psy13349 167 IYIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYA 246 (604)
Q Consensus 167 ~~~i~~~~~l~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~ 246 (604)
++.++.+++|++++|.+++++++.+|+++++..++.+.+++..++..+..++.++.+.|++.|+++||+.+.|.++..+|
T Consensus 279 ~~~~i~l~vm~~ys~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w 358 (709)
T COG2274 279 LFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQW 358 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 247 RFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFE 326 (604)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 326 (604)
++.+.++.+...+..+.......+..++..+..++++|+|+++|.+|.+|+|.+++|.++...+..|+..+.....++..
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~ 438 (709)
T COG2274 359 DNRLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQ 438 (709)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888777766666666
Q ss_pred HHHHHHHHHHhhccccccccCcccccccccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHH
Q psy13349 327 SIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNL 405 (604)
Q Consensus 327 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~l 405 (604)
.....++..+.++.+++.+.+......++..++|+++||+|+|+.+ +++|+|+||+|++||++||||+||||||||+|+
T Consensus 439 ~~~~~~rL~dil~~~~E~~~~~~~~~~~~~~g~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KL 518 (709)
T COG2274 439 AKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKL 518 (709)
T ss_pred HHHHHHHHHHHhcCCcccccccccccccccCceEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHH
Confidence 6666666666676665533222112234456899999999999875 469999999999999999999999999999999
Q ss_pred HhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhh
Q psy13349 406 LLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDE 485 (604)
Q Consensus 406 l~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~ 485 (604)
|+|+|+|++|+|.+||.|++++++..+|++|+||+||+.+|+|||+|||++++|++++|++++||+.+++++||.++|.
T Consensus 519 L~gly~p~~G~I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~- 597 (709)
T COG2274 519 LLGLYKPQQGRILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPM- 597 (709)
T ss_pred HhcCCCCCCceEEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccc-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh
Q psy13349 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA 565 (604)
Q Consensus 486 ~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~ 565 (604)
||||.+||+|.+|||||||||+|||||+++|+||||||||||||+++|+.|.+++.+..+++|+|+||||+++++.
T Consensus 598 ----gy~t~v~E~G~~LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~ 673 (709)
T COG2274 598 ----GYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRS 673 (709)
T ss_pred ----ccccccccCCCCCCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCeEEEEeCCEEeEecChhHHhhcCcHHHHHHHHh
Q psy13349 566 MDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600 (604)
Q Consensus 566 ~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~~q 600 (604)
||||+|||+|+|+|+|+|+||++.+|.|+++|+.|
T Consensus 674 adrIiVl~~Gkiv~~gs~~ell~~~g~y~~l~~~q 708 (709)
T COG2274 674 ADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQ 708 (709)
T ss_pred ccEEEEccCCceeccCCHHHHHHhcChHHHHHhcc
Confidence 99999999999999999999999999999999876
No 3
>KOG0055|consensus
Probab=100.00 E-value=7.6e-99 Score=855.53 Aligned_cols=571 Identities=30% Similarity=0.359 Sum_probs=501.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy13349 25 ISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLF 103 (604)
Q Consensus 25 ~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 103 (604)
...+.++.+|+|+.++++++.+++.+...++..+++++++..+...+.......... +.++.+++.+. .+..+++.++
T Consensus 652 ~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~-~al~f~~l~~~~~i~~~~q~~~ 730 (1228)
T KOG0055|consen 652 FWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRA-WALIFLGLGIVSGITNFLQHYF 730 (1228)
T ss_pred HHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334567889999999999999999999999999999999998875443222211111 11122222222 4455555543
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCccccccc-chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 104 KHQVLSGNFPMLLRWNFHRLILNQSINFFQEE-FAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 104 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
+...++++..++|...|+++++++.+|||+. ++|.+.+|+.+|...++..+...+..+++++..+++.+++.|+++|.
T Consensus 731 -f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~W~ 809 (1228)
T KOG0055|consen 731 -FGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYGWR 809 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567899999999999999999999999863 45999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
++++++...|++++......+.+.....+..+..++.++...|++++++||++|+.|+++.+.+.+..++..+...+...
T Consensus 810 lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~~~ 889 (1228)
T KOG0055|consen 810 LALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKRGL 889 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKY 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (604)
+..+...+.+.+..+...+.+++|.+++.+|.+++..++-.+.....-...+.......+.+..+...+...++.+++++
T Consensus 890 i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr~~ 969 (1228)
T KOG0055|consen 890 ISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDRKP 969 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999988876655433333333344445566666667777788888887
Q ss_pred ccccCc-ccccccccCceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q psy13349 343 KIVDNY-NAKRLVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419 (604)
Q Consensus 343 ~~~~~~-~~~~~~~~~~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i 419 (604)
++.... .....+...|+|+++||+|+||. +.++|+|+||+|++|+++||||||||||||++.+|.|||+|++|.|.|
T Consensus 970 ~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~I 1049 (1228)
T KOG0055|consen 970 TIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKI 1049 (1228)
T ss_pred CCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 654332 22122345689999999999996 457999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 420 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
||+|+++++.+++|++||.|+|+|.||++||||||+||.++++++|+.+|++.|++|+||.+||+ ||||.|||+|
T Consensus 1050 Dg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~-----GyDT~vGerG 1124 (1228)
T KOG0055|consen 1050 DGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQ-----GYDTRVGERG 1124 (1228)
T ss_pred CCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcC-----cccCccCccc
Confidence 99999999999999999999999999999999999999666999999999999999999999999 9999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~ 579 (604)
.+||||||||||||||++|||+||+|||+|||||.++|+.++++|++.+.++|+|+|||||+++++||.|+|+++|+|+|
T Consensus 1125 ~QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE 1204 (1228)
T KOG0055|consen 1125 VQLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVE 1204 (1228)
T ss_pred CcCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhhcCcHHHHHHHHhhc
Q psy13349 580 EGSHLDLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 580 ~g~~~~l~~~~~~y~~l~~~q~~ 602 (604)
+|+|+||++.+|.|++|.+.|..
T Consensus 1205 ~GtH~~L~~~~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1205 QGTHDELLAKRGIYFRLVQLQSS 1227 (1228)
T ss_pred cccHHHHHhCCCchHHHhhhccC
Confidence 99999999999999999998864
No 4
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.5e-96 Score=832.02 Aligned_cols=570 Identities=21% Similarity=0.271 Sum_probs=476.7
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHH
Q psy13349 22 YKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQ 100 (604)
Q Consensus 22 ~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 100 (604)
+...+|++++.+++++.++.+++++++.+++.++.|+++++++|.+...+.. .. ....+..+++++.++ .++.++.
T Consensus 7 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~~~~~ 83 (588)
T PRK11174 7 KELTRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-RE--ALLPPFILLILLFVLRALLAWLR 83 (588)
T ss_pred chhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hh--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 4457889999999999999999999999999999999999999986522111 10 011111122222222 5566666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 101 TLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFN 180 (604)
Q Consensus 101 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 180 (604)
.++.+ ..+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++..++.+++.++++++++
T Consensus 84 ~~~~~-~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 162 (588)
T PRK11174 84 ERVGF-KAGQHIRQQIRQQVLDKLQQLGPAWIQGKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPIN 162 (588)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHhcCchhhccCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66554 45678999999999999999999999999999999999999999999998888887777777888888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q psy13349 181 VYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQ 260 (604)
Q Consensus 181 ~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 260 (604)
|.+++++++.+|+..++..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.+++++..+++.+...+.
T Consensus 163 ~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 242 (588)
T PRK11174 163 WAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEV 242 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888999999999999999999999999999999999999999999999999999988888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHH-H--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 261 MRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAV-A--------AATAMSLRLNGISHWVMWEIAALFESIGTI 331 (604)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~-~--------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 331 (604)
.+.......+..++..+..+++++++++.+ .|.+|+|.+ . ++..++..+..|+..+...+..+..+....
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~ 321 (588)
T PRK11174 243 LRMAFLSSAVLEFFASISIALVAVYFGFSY-LGELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAA 321 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hcccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666666666666555544445555544 488888865 1 111333344455555444444455555555
Q ss_pred HHHHHhhccccccccCccccccc-ccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 332 QDGMNMLSKKYKIVDNYNAKRLV-VTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 332 ~~~~~~l~~~~~~~~~~~~~~~~-~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++..+.++.+++... .+....+ ...+.|+++||+|.|++++++|+|+||+|+|||++|||||||||||||+++|+|+|
T Consensus 322 ~ri~~~l~~~~~~~~-~~~~~~~~~~~~~i~~~~vsf~~~~~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~ 400 (588)
T PRK11174 322 ESLVTFLETPLAHPQ-QGEKELASNDPVTIEAEDLEILSPDGKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL 400 (588)
T ss_pred HHHHHHHcCCCcccC-CCccccCCCCCceEEEEeeEEeccCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 565555554332111 1111111 12346999999988766678999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCC
Q psy13349 411 DIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490 (604)
Q Consensus 411 ~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g 490 (604)
|++|+|.+||+|+++++.+++|++|+||||||++|++||+|||++|+|+++++|+++|++.+++++|+.++|+ |
T Consensus 401 -p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~-----G 474 (588)
T PRK11174 401 -PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQ-----G 474 (588)
T ss_pred -CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccc-----c
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999 9
Q ss_pred CccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEE
Q psy13349 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLI 570 (604)
Q Consensus 491 ~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~ 570 (604)
|||.+||+|.+|||||||||+|||||++||+|||||||||+||+++|+.|.+++++..+++|+|+||||+++++.||+|+
T Consensus 475 ~dT~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Ii 554 (588)
T PRK11174 475 LDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIW 554 (588)
T ss_pred cccccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999888999999999999999999999
Q ss_pred EEeCCEEeEecChhHHhhcCcHHHHHHHHhhcC
Q psy13349 571 VLDNGCVAEEGSHLDLLKKNGLYSRLWRHQNKN 603 (604)
Q Consensus 571 vl~~G~iv~~g~~~~l~~~~~~y~~l~~~q~~~ 603 (604)
+|++|+++|+|+|+||++++|.|+++|+.|...
T Consensus 555 vl~~G~i~e~G~~~eL~~~~~~y~~l~~~q~~~ 587 (588)
T PRK11174 555 VMQDGQIVQQGDYAELSQAGGLFATLLAHRQEE 587 (588)
T ss_pred EEeCCeEeecCCHHHHHhcchHHHHHHHHhhcC
Confidence 999999999999999999999999999988753
No 5
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=100.00 E-value=3.3e-94 Score=808.99 Aligned_cols=563 Identities=35% Similarity=0.508 Sum_probs=495.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 25 ISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFK 104 (604)
Q Consensus 25 ~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 104 (604)
.++++.+.+ ++ .+..+++++++.+++....|++++.++|.+... .... ......+++..++..++.++..++.
T Consensus 4 ~~~l~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~----~~~~~~~~~~~~~~~v~~~~~~~~~ 76 (567)
T COG1132 4 LRRLLKYLK-YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD-LGEL----LELLLLLLLLALLGGVLRALQSYLG 76 (567)
T ss_pred HHHHHHHHH-HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-HHHH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666 77 899999999999999999999999999987611 1111 1111112222222244555555443
Q ss_pred HHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 105 HQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYML 184 (604)
Q Consensus 105 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 184 (604)
. ....++..++|.++|++++++|+.+|++.++|++.+|+++|++.+++++......+..+++.+++.+++++..+|.++
T Consensus 77 ~-~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 155 (567)
T COG1132 77 S-RLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLA 155 (567)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhCCHHHhCcCCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 2 344678899999999999999999999999999999999999999999988766666567788888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 185 FPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLI 264 (604)
Q Consensus 185 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (604)
+++++..|++.+...++.++.++..++.++..+++++.+.|.++|++++|+|+.++.+.+++.+..++..+...+..+..
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (567)
T COG1132 156 LILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLE 235 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888889999999999999999999999999999999999999999988888888887777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy13349 265 SSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKI 344 (604)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (604)
....++..++..+...+++++|++++..+.+++|.+++++.+..++..++..+......+.......++..+.++++++.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~ 315 (567)
T COG1132 236 ALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEV 315 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 77778888888888999999999999999999999999999999998888888777777777888888888888775544
Q ss_pred ccCcccccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC
Q psy13349 345 VDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424 (604)
Q Consensus 345 ~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~ 424 (604)
.+.+.. .....++|+|+||+|+|++++++|+|+||+++|||++||||||||||||++++|+|+|+|++|+|.+||+|+
T Consensus 316 ~~~~~~--~~~~~~~I~f~~vsf~y~~~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI 393 (567)
T COG1132 316 EDPPDP--LKDTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDI 393 (567)
T ss_pred cCCCCC--CCCCCCeEEEEEEEEEcCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEeh
Confidence 332221 122346799999999998767899999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 425 SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 425 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
++++.+++|++|++|||||+||++||+|||.+|+|++++||+++|++.++++|||.++|+ ||||.+||+|.+|||
T Consensus 394 ~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~-----g~dt~vge~G~~LSg 468 (567)
T COG1132 394 RDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPD-----GYDTIVGERGVNLSG 468 (567)
T ss_pred hhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcc-----cccceecCCCccCCH
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~ 584 (604)
|||||||||||+++||||||||||||+||+++|+.|++++.+..++||+++||||++++++||+|+|||+|+|+|.|+|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999888889999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHHhhc
Q psy13349 585 DLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 585 ~l~~~~~~y~~l~~~q~~ 602 (604)
||++++|.|++||+.|..
T Consensus 549 eLl~~~g~y~~l~~~~~~ 566 (567)
T COG1132 549 ELLAKGGLYARLYQAQGG 566 (567)
T ss_pred HHHHcCCHHHHHHHHhhc
Confidence 999999999999998864
No 6
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=100.00 E-value=3.9e-94 Score=827.80 Aligned_cols=578 Identities=25% Similarity=0.353 Sum_probs=496.7
Q ss_pred cCCCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHH
Q psy13349 9 LYPFPNILIKPPPYKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGF 88 (604)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~ 88 (604)
++|.++....+.....+++++.+++++++.+...++++++..++.++.|++++.++|.+........ .+.+...++
T Consensus 128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~~~----l~~~~~~~~ 203 (708)
T TIGR01193 128 ISPTPEYKPIKEKENSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGT----LGIISIGLI 203 (708)
T ss_pred EEecccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHH----HHHHHHHHH
Confidence 4455544433322244677888899999999999999999999999999999999998865432111 111211222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy13349 89 ILISS-TVFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITI 167 (604)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~ 167 (604)
++.++ .++.+++.++.. ..+.++..++|.++|+|++++|+.+|+++++|++++|++ |.+.+++++.......+..++
T Consensus 204 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ll~l~~~~f~~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~ 281 (708)
T TIGR01193 204 IAYIIQQILSYIQIFLLN-VLGQRLSIDIILSYIKHLFELPMSFFSTRRTGEIVSRFT-DASSIIDALASTILSLFLDMW 281 (708)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCHHHhCCCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHH
Confidence 22222 556667666543 457789999999999999999999999999999999997 889999988776666566666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHH
Q psy13349 168 YIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYAR 247 (604)
Q Consensus 168 ~~i~~~~~l~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~ 247 (604)
.++++++++++++|++++++++.+|+++++..++.++.++..++..+..++..+.+.|+++|+++||++|.|+.+.++|.
T Consensus 282 ~~~~~~~~l~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 361 (708)
T TIGR01193 282 ILVIVGLFLVRQNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKID 361 (708)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHH
Confidence 66777778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 248 FAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFES 327 (604)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 327 (604)
+...++.+...+..+.......+..++..+..++++++|++++.+|.+|+|.++++..+...+..|+..+...+..+...
T Consensus 362 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~ 441 (708)
T TIGR01193 362 SEFGDYLNKSFKYQKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAA 441 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888877777777777777888888999999999999999999999999998888877776666666666
Q ss_pred HHHHHHHHHhhccccccccCcccccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy13349 328 IGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL 407 (604)
Q Consensus 328 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~ 407 (604)
....++..+.++.+++..+.......+...+.|+++||+|+|++++++|+|+||+|++||++|||||||||||||+++|+
T Consensus 442 ~~~~~ri~~~l~~~~e~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~ 521 (708)
T TIGR01193 442 RVANNRLNEVYLVDSEFINKKKRTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLV 521 (708)
T ss_pred HHHHHHHHHHHcCCCcccccccccCCCCCCCcEEEEEEEEEcCCCCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHh
Confidence 66666666665544332211110111223467999999999986678999999999999999999999999999999999
Q ss_pred cCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcC-CCCCCHHHHHHHHHHchHHHHHHHhhhhh
Q psy13349 408 RFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG-RPDASECELFNAAKCAEADIFIKSLTDEH 486 (604)
Q Consensus 408 ~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g-~~~~~~~~i~~a~~~~~~~~~i~~lp~~~ 486 (604)
|+|+|++|+|.+||.|+++++.+++|++|+||||||++|++||+|||++| +|++++++++++++.+++++++.++|+
T Consensus 522 gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~-- 599 (708)
T TIGR01193 522 GFFQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPL-- 599 (708)
T ss_pred ccCCCCCcEEEECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhccc--
Confidence 99999999999999999999999999999999999999999999999999 588999999999999999999999999
Q ss_pred hcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhc
Q psy13349 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM 566 (604)
Q Consensus 487 ~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~ 566 (604)
||||.+||+|.+|||||||||+||||++++|++||||||||+||+++|+.+.+.|++. +++|+|+||||+++++.|
T Consensus 600 ---gldt~i~e~G~~LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~ 675 (708)
T TIGR01193 600 ---GYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQS 675 (708)
T ss_pred ---ccCcEecCCCCCCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcC
Confidence 9999999999999999999999999999999999999999999999999999999875 689999999999999999
Q ss_pred CeEEEEeCCEEeEecChhHHhhcCcHHHHHHH
Q psy13349 567 DRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598 (604)
Q Consensus 567 d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~ 598 (604)
|+|++|++|+++|.|+|+||++++|.|+++|+
T Consensus 676 D~i~~l~~G~i~~~G~~~~L~~~~~~y~~l~~ 707 (708)
T TIGR01193 676 DKIIVLDHGKIIEQGSHDELLDRNGFYASLIH 707 (708)
T ss_pred CEEEEEECCEEEEECCHHHHHhcCCcHHHHhh
Confidence 99999999999999999999999999999985
No 7
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=100.00 E-value=4.5e-93 Score=816.31 Aligned_cols=562 Identities=25% Similarity=0.312 Sum_probs=490.0
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHH
Q psy13349 23 KLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQT 101 (604)
Q Consensus 23 ~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 101 (604)
...+|++..++++++.++..++++++.+++.++.|++++.++|.+....... ..+.+.+.++++.+. .++.+++.
T Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~ 197 (686)
T TIGR03797 122 GLRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADRS----LLVQIALALLAAAVGAAAFQLAQS 197 (686)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCChh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556665557889999999999999999999999999999999886433211 111222222222222 55666666
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 102 LFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNV 181 (604)
Q Consensus 102 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 181 (604)
++. ..++.++..++|.++|+|++++|+.||+++++|++++|++ |++.+++++...+...+...+.+++.++++++++|
T Consensus 198 ~~~-~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 275 (686)
T TIGR03797 198 LAV-LRLETRMDASLQAAVWDRLLRLPVSFFRQYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSW 275 (686)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 554 3557789999999999999999999999999999999997 68999998877666656566666677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 182 YMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQM 261 (604)
Q Consensus 182 ~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 261 (604)
.+++++++.+++++++..++.++.++..++..+..++..+.+.|.++|+++||+++.|+.+.++|.+..++..+...+..
T Consensus 276 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 355 (686)
T TIGR03797 276 KLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQ 355 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy13349 262 RLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKK 341 (604)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (604)
+...+...+..++..+..++++++|++++.+|.+|+|.++++..+..++..++..+...+..+.......++..+.++.+
T Consensus 356 ~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 435 (686)
T TIGR03797 356 RIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEAL 435 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 88888888888888888889999999999999999999999999998888887777776666666666666666666544
Q ss_pred cccccCcccccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC
Q psy13349 342 YKIVDNYNAKRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420 (604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~ 420 (604)
++..+ .........+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+|.+|
T Consensus 436 ~e~~~--~~~~~~~~~~~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 513 (686)
T TIGR03797 436 PEVDE--AKTDPGKLSGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYD 513 (686)
T ss_pred ccccc--CcCCCCCCCceEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 33211 11111122457999999999964 4679999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 421 GQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 421 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
|+|+++++.+++|++|+||||||++|++||+|||++|+| +++++++++++.+++++++.++|+ |+||.+||+|.
T Consensus 514 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~-----G~dt~ige~G~ 587 (686)
T TIGR03797 514 GQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPM-----GMHTVISEGGG 587 (686)
T ss_pred CEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccc-----cccccccCCCC
Confidence 999999999999999999999999999999999999998 999999999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
+|||||||||+|||||+++|++||||||||+||+++|+++.+.+++. ++|+|+||||+++++.||+|++|++|+|+|+
T Consensus 588 ~LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~ 665 (686)
T TIGR03797 588 TLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQ 665 (686)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999876 5899999999999999999999999999999
Q ss_pred cChhHHhhcCcHHHHHHHHh
Q psy13349 581 GSHLDLLKKNGLYSRLWRHQ 600 (604)
Q Consensus 581 g~~~~l~~~~~~y~~l~~~q 600 (604)
|+|+||++++|.|+++|+.|
T Consensus 666 G~~~~Ll~~~~~y~~l~~~q 685 (686)
T TIGR03797 666 GTYDELMAREGLFAQLARRQ 685 (686)
T ss_pred CCHHHHHhCCcHHHHHHHhc
Confidence 99999999999999999876
No 8
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=100.00 E-value=1.8e-93 Score=822.92 Aligned_cols=576 Identities=26% Similarity=0.303 Sum_probs=499.6
Q ss_pred cCCCCCCCCCCCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHH
Q psy13349 9 LYPFPNILIKPPPYKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGF 88 (604)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~ 88 (604)
++|.++..........+++++++++++++.+...++++++..++.++.|++++.++|.+........ ...+...++
T Consensus 126 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~~~----l~~~~~~~~ 201 (710)
T TIGR03796 126 FEPGPEFQKGGRKPSLLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQDW----LRPLLLGMG 201 (710)
T ss_pred EEECccccccCcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCChhH----HHHHHHHHH
Confidence 4555544433233356778888999999999999999999999999999999999998765433211 111222222
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy13349 89 ILISS-TVFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITI 167 (604)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~ 167 (604)
++.++ .++.+++.++.. .++.++..++|.++|+|++++|+.+|+++++|++++|+++| +.+++++...+..++..++
T Consensus 202 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ll~l~~~~~~~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~ 279 (710)
T TIGR03796 202 LTALLQGVLTWLQLYYLR-RLQIKLAVGMSARFLWHILRLPVRFFAQRHAGDIASRVQLN-DQVAEFLSGQLATTALDAV 279 (710)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCHHHHcCCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHH
Confidence 22222 556666666543 45778999999999999999999999999999999999888 6899998877777777788
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHH
Q psy13349 168 YIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYAR 247 (604)
Q Consensus 168 ~~i~~~~~l~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~ 247 (604)
.++++++++++++|.+++++++.+++++++..++.++.++..++..+..++..+.+.|.++|+++||++|.|+.+.++|.
T Consensus 280 ~~~~~~~~l~~~~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~ 359 (710)
T TIGR03796 280 MLVFYALLMLLYDPVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWA 359 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 248 FAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFES 327 (604)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 327 (604)
+...+..+...+..+.......+..++..+..++++++|++++.+|.+|+|.++++..+...+..++..+......+...
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~ 439 (710)
T TIGR03796 360 GYQAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQEL 439 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888899999999999999999999999999998888877776666666666
Q ss_pred HHHHHHHHHhhccccccccCc----c-cccc-cccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHH
Q psy13349 328 IGTIQDGMNMLSKKYKIVDNY----N-AKRL-VVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKS 400 (604)
Q Consensus 328 ~~~~~~~~~~l~~~~~~~~~~----~-~~~~-~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKS 400 (604)
...+++..+.++.+++..... . .... +...+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||
T Consensus 440 ~~~~~ri~~il~~~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKS 519 (710)
T TIGR03796 440 EGDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKS 519 (710)
T ss_pred HHHHHHHHHHHcCCCccccccccccccccccCCCCCCeEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHH
Confidence 666666666665543322111 0 0011 122467999999999986 46799999999999999999999999999
Q ss_pred HHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHH
Q psy13349 401 TINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480 (604)
Q Consensus 401 Tl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~ 480 (604)
||+++|+|+|+|++|+|.+||.|+++++.+++|++|+||||||++|++||+|||++++|++++++++++++.+++++++.
T Consensus 520 TLlklL~gl~~p~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~ 599 (710)
T TIGR03796 520 TIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVIT 599 (710)
T ss_pred HHHHHHhcCCCCCCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccCh
Q psy13349 481 SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560 (604)
Q Consensus 481 ~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l 560 (604)
++|+ |+||.+||+|.+|||||||||+|||||+++|+++|||||||+||+++|+++.+.+++ .++|+|+||||+
T Consensus 600 ~lp~-----gl~t~i~e~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl 672 (710)
T TIGR03796 600 SRPG-----GYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRL 672 (710)
T ss_pred hCcC-----cccceeccCCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCH
Confidence 9999 999999999999999999999999999999999999999999999999999999986 489999999999
Q ss_pred hHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHH
Q psy13349 561 STISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLW 597 (604)
Q Consensus 561 ~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~ 597 (604)
++++.||||++|++|+++++|+|+||++++|.|+++|
T Consensus 673 ~~i~~~D~Iivl~~G~i~~~G~~~~Ll~~~~~y~~l~ 709 (710)
T TIGR03796 673 STIRDCDEIIVLERGKVVQRGTHEELWAVGGAYARLI 709 (710)
T ss_pred HHHHhCCEEEEEeCCEEEEecCHHHHHHcCCcHHHHh
Confidence 9999999999999999999999999999999999987
No 9
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=100.00 E-value=1e-92 Score=813.87 Aligned_cols=564 Identities=27% Similarity=0.397 Sum_probs=491.6
Q ss_pred CchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHH
Q psy13349 21 PYKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQ 100 (604)
Q Consensus 21 ~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 100 (604)
.+...++++++.+++++.+..+++++++.+++.++.|++++.++|.+....+.... ...++++++..++..++.+++
T Consensus 145 ~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~ 221 (711)
T TIGR00958 145 TADLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPAL---ASAIFFMCLLSIASSVSAGLR 221 (711)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHH---HHHHHHHHHHHHHHHHHHHHH
Confidence 34456678888999999999999999999999999999999999988643321111 011111111111124455555
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 101 TLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFN 180 (604)
Q Consensus 101 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 180 (604)
..+. .....++..++|.++|++++++|+.+|++.++|++++|+++|++.+++++...+..++..++.+++.+++++.++
T Consensus 222 ~~~~-~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s 300 (711)
T TIGR00958 222 GGSF-NYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLS 300 (711)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5443 345678899999999999999999999999999999999999999999998888888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q psy13349 181 VYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQ 260 (604)
Q Consensus 181 ~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 260 (604)
|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.
T Consensus 301 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 380 (711)
T TIGR00958 301 PRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRK 380 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy13349 261 MRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSK 340 (604)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 340 (604)
............++..+..++++++|++++.+|.+|+|.++++..|..++..++..+......+..+....++..+.++.
T Consensus 381 ~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~ 460 (711)
T TIGR00958 381 ALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDR 460 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 77666666666777777778888999999999999999999999999999888888888788888888888888887766
Q ss_pred ccccccCcccccccccCceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE
Q psy13349 341 KYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418 (604)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~ 418 (604)
+++..+. ......+..+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 461 ~~~~~~~-~~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 539 (711)
T TIGR00958 461 KPNIPLT-GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVL 539 (711)
T ss_pred CCCCCCC-CCCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 5443211 11111123457999999999985 35799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccC
Q psy13349 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEH 498 (604)
Q Consensus 419 i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~ 498 (604)
+||+|+++++.+++|++|+||||||++|++||||||++|.|+++|+++.++++.++++++++++|+ |+||.+||+
T Consensus 540 idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~-----GldT~ige~ 614 (711)
T TIGR00958 540 LDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPN-----GYDTEVGEK 614 (711)
T ss_pred ECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCC-----ccCCcccCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEe
Q psy13349 499 GIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVA 578 (604)
Q Consensus 499 g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv 578 (604)
|.+||||||||||||||++++|+|+|||||||+||+++|+.+.+ . ...+++|+|+||||+++++.||+|++|++|+|+
T Consensus 615 G~~LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~iv 692 (711)
T TIGR00958 615 GSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVV 692 (711)
T ss_pred CCcCCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999998 3 334689999999999999999999999999999
Q ss_pred EecChhHHhhcCcHHHHH
Q psy13349 579 EEGSHLDLLKKNGLYSRL 596 (604)
Q Consensus 579 ~~g~~~~l~~~~~~y~~l 596 (604)
|+|+|+||+++++.|++|
T Consensus 693 e~Gt~~eL~~~~~~y~~l 710 (711)
T TIGR00958 693 EMGTHKQLMEDQGCYKHL 710 (711)
T ss_pred EeeCHHHHHhCCCchHhc
Confidence 999999999999999886
No 10
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=100.00 E-value=9.3e-92 Score=806.36 Aligned_cols=555 Identities=24% Similarity=0.345 Sum_probs=484.8
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHH
Q psy13349 23 KLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQT 101 (604)
Q Consensus 23 ~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 101 (604)
...+|++.+.+++++.+...++++++.+++.++.|++++.++|.+........ ...+...++++.++ .++.+++.
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~~~----l~~~~~~~~~~~~~~~~~~~~~~ 208 (694)
T TIGR03375 133 RPKHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQAFET----LWVLAIGVALAIVFDFVLKTLRS 208 (694)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcHhH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999999999999999999999998764432111 11121122222222 55666666
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 102 LFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNV 181 (604)
Q Consensus 102 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 181 (604)
++. ...+.++..++|.++|+|++++|+.| +++++|++++|+ +|++.+++++...+...+..++++++.++++++++|
T Consensus 209 ~~~-~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 285 (694)
T TIGR03375 209 YFL-DVAGKKADLILSAKLFERVLGLRMEA-RPASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGG 285 (694)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHhCCCccc-CCCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 654 35677899999999999999999998 788999999998 799999999877665555666666677788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 182 YMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQM 261 (604)
Q Consensus 182 ~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 261 (604)
.+++++++.+|+++++..++.++.++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 286 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 365 (694)
T TIGR03375 286 PLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSR 365 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy13349 262 RLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKK 341 (604)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (604)
+.......+..++..+..++++++|++++.+|.+|+|.++++..+...+..++..+.....++.......++..+.++.+
T Consensus 366 ~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~ 445 (694)
T TIGR03375 366 FLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLP 445 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888888899999999999999999999999999888888777766666666666677766666554
Q ss_pred cccccCcccccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC
Q psy13349 342 YKIVDNYNAKRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420 (604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~ 420 (604)
++..+.......+...+.|+++||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+|
T Consensus 446 ~e~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 525 (694)
T TIGR03375 446 VERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLD 525 (694)
T ss_pred CCCCCCCCCCCCCCccceEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 432211111111122457999999999975 4579999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 421 GQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 421 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
|+|+++++.+++|++|+||||||++|++||+|||++++|++++++++++++.+++++++.++|+ ||||.+||+|.
T Consensus 526 g~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~-----gl~T~i~e~G~ 600 (694)
T TIGR03375 526 GVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPD-----GLDMQIGERGR 600 (694)
T ss_pred CEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcc-----cccceecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
+|||||||||+|||||+++|+++|||||||+||+++|+.+.+.+.+..+++|+|+||||+++++.||+|++|++|+++|+
T Consensus 601 ~LSgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~ 680 (694)
T TIGR03375 601 SLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVAD 680 (694)
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEee
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhc
Q psy13349 581 GSHLDLLKK 589 (604)
Q Consensus 581 g~~~~l~~~ 589 (604)
|+|+||+++
T Consensus 681 G~~~eLl~~ 689 (694)
T TIGR03375 681 GPKDQVLEA 689 (694)
T ss_pred CCHHHHHHH
Confidence 999999875
No 11
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=100.00 E-value=1.7e-91 Score=786.62 Aligned_cols=564 Identities=24% Similarity=0.276 Sum_probs=476.4
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy13349 27 FILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKH 105 (604)
Q Consensus 27 ~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 105 (604)
+++++.+++++.++.+++++++++++.+..|+++++++|.....+...............++++.+. .++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (574)
T PRK11160 6 PFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVSH 85 (574)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999999999999999999999999999999997642221000000000111112222223 566677766554
Q ss_pred HHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 106 QVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLF 185 (604)
Q Consensus 106 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 185 (604)
....++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++..++.+++.+++++++||.+++
T Consensus 86 -~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 164 (574)
T PRK11160 86 -DATFRVLTHLRVFTFSKLLPLSPAGLARYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTLAL 164 (574)
T ss_pred -HHHHHHHHHHHHHHHHHhhccChHhhccCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999999999999999999999999888888888888888888899999999999
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 186 PFVIWISAYIY-TLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLI 264 (604)
Q Consensus 186 v~l~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (604)
++++.+|+.++ ++.++.++.++..++.++..+++++.+.|.++|+++||+||.|+.+.+++.+..+++.+...+..+..
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (574)
T PRK11160 165 TLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQANLT 244 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88777776654 45777888888888999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy13349 265 SSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRL-NGISHWVMWEIAALFESIGTIQDGMNMLSKKYK 343 (604)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (604)
.....+..++..+..++++++|++++ +|.+++|.++++..+.... ..++..+...+..+.......++..+.++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~~~ 323 (574)
T PRK11160 245 GLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQKPE 323 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 88888888888777778888888884 7899999999988775432 223333333333444445555555555554433
Q ss_pred cccCcccccccccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCE
Q psy13349 344 IVDNYNAKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422 (604)
Q Consensus 344 ~~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~ 422 (604)
..+..... ..+..+.|+++||+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|+|+|++|+|.+||+
T Consensus 324 ~~~~~~~~-~~~~~~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~ 402 (574)
T PRK11160 324 VTFPTTST-AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQ 402 (574)
T ss_pred CCCCcccC-CCCCCCeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCE
Confidence 22111111 11224579999999999763 57999999999999999999999999999999999999999999999999
Q ss_pred eCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 423 NISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 423 ~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
|+++++.+++|++|+||||||++|++|++|||++++|+++++++.++++.+++++++.+ |+ ||||.+||+|.+|
T Consensus 403 ~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~-----GldT~vge~g~~L 476 (574)
T PRK11160 403 PIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DK-----GLNAWLGEGGRQL 476 (574)
T ss_pred EhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-cc-----ccCchhcCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999 99 9999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecC
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~ 582 (604)
||||||||+||||++++|+++|||||||+||+++|+.+.+.+.+..+++|+|+||||+++++.||+|++|++|+++|.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hhHHhhcCcHHHHHHHH
Q psy13349 583 HLDLLKKNGLYSRLWRH 599 (604)
Q Consensus 583 ~~~l~~~~~~y~~l~~~ 599 (604)
|+||++++|.|+++|+.
T Consensus 557 ~~~l~~~~g~y~~l~~~ 573 (574)
T PRK11160 557 HQELLAQQGRYYQLKQR 573 (574)
T ss_pred HHHHHhcCcHHHHHHhh
Confidence 99999999999999974
No 12
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=100.00 E-value=2.4e-91 Score=788.99 Aligned_cols=567 Identities=26% Similarity=0.360 Sum_probs=490.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTL 102 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 102 (604)
..++++++.+++++.++..+++.++.+++..+.|++++.++|.+........ ...+..+++++.++ .++.++..+
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~ 87 (582)
T PRK11176 12 TFRRLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSV----LKWMPLVVIGLMILRGITSFISSY 87 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567888889999999998888888888889999999999998764322111 11111112212222 455556555
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 103 FKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 103 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
..+ ....++..++|.++|+++.+.|+.+|++.+.|++.+|+++|++.+++++...+..++..++.+++.++++++++|.
T Consensus 88 ~~~-~~~~~~~~~lr~~~~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (582)
T PRK11176 88 CIS-WVSGKVVMTMRRRLFGHMMGMPVSFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443 4566788999999999999999999999999999999999999999998888887778888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
+++++++.+|+.+++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.+++++..+++.+...+..+
T Consensus 167 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T PRK11176 167 LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888999999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKY 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (604)
.......+..++..+..++++++|++.+..|.+|+|+++++..+...+..++..+......+.......++..+.++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 326 (582)
T PRK11176 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888888899999999999999999999988888877777666555555554555555555544332
Q ss_pred ccccCcccccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 343 KIVDNYNAKRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
+.. .+.....+..+.|+++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|++||
T Consensus 327 ~~~--~~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g 404 (582)
T PRK11176 327 EKD--EGKRVIERAKGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404 (582)
T ss_pred cCC--CCCcCCCCCCCeEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECC
Confidence 211 111111122357999999999976 46799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCC-CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD-ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 422 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~-~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
+|+++++.+++|++|+||||||++|++|++|||++|+|+ ++|++++++++.++++++++++|+ |+||.+||+|.
T Consensus 405 ~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~-----Gldt~ig~~g~ 479 (582)
T PRK11176 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDN-----GLDTVIGENGV 479 (582)
T ss_pred EEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhccc-----ccCceeCCCCC
Confidence 999999999999999999999999999999999999765 799999999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
+|||||||||+|||||+++|+++|||||||+||+++++.+.+.+.+..+++|+|+||||++.++.||+|++|++|+++|+
T Consensus 480 ~LSGGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~ 559 (582)
T PRK11176 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVER 559 (582)
T ss_pred cCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999998889999999999999999999999999999999
Q ss_pred cChhHHhhcCcHHHHHHHHhhc
Q psy13349 581 GSHLDLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 581 g~~~~l~~~~~~y~~l~~~q~~ 602 (604)
|+|++|+++++.|+++|+.|.+
T Consensus 560 g~~~~l~~~~~~y~~l~~~~~~ 581 (582)
T PRK11176 560 GTHAELLAQNGVYAQLHKMQFG 581 (582)
T ss_pred CCHHHHHhCCChHHHHHHHHhc
Confidence 9999999999999999997753
No 13
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=7.7e-91 Score=798.35 Aligned_cols=567 Identities=29% Similarity=0.393 Sum_probs=497.0
Q ss_pred hHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHH
Q psy13349 23 KLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQT 101 (604)
Q Consensus 23 ~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~ 101 (604)
..++|++.+.+++++.+...++++++.+++.++.|++++.++|.+........ ...+...++++.++ .++.+++.
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~~~----l~~l~~~~~~~~~~~~~~~~l~~ 200 (694)
T TIGR01846 125 FGFSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRGLST----LSVLALAMLAVAIFEPALGGLRT 200 (694)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChhH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45778888899999999999999999999999999999999998864332111 11222222222222 56667776
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 102 LFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNV 181 (604)
Q Consensus 102 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 181 (604)
++.. ..+.++..++|.++|+|++++|+.+|+++++|++++|+ +|++.+++++...+..++..+++++++++++++++|
T Consensus 201 ~~~~-~~~~~~~~~l~~~~~~~l~~l~~~~f~~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 278 (694)
T TIGR01846 201 YLFA-HLTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSP 278 (694)
T ss_pred HHHH-HHHHHHHHHHHHHHHHHHHcCCHHHcCCCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6554 45778999999999999999999999999999999999 699999999877666655556656666788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 182 YMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQM 261 (604)
Q Consensus 182 ~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 261 (604)
.+++++++.+++++++..++.++.++..++..+..++.++.+.|.++|+++||++|.|+.+.++|.+..+++.+...+..
T Consensus 279 ~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 358 (694)
T TIGR01846 279 TLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVT 358 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999989999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy13349 262 RLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKK 341 (604)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (604)
+.......+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+......+......+++..+.++.+
T Consensus 359 ~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~ 438 (694)
T TIGR01846 359 NLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSP 438 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 88888888888888888888999999999999999999999999999888887777766666666666666666666544
Q ss_pred cccccCcccccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC
Q psy13349 342 YKIVDNYNAKRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420 (604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~ 420 (604)
++.... .....+...+.|+++||+|+|++ ++++|+|+||+|++||++||+|+||||||||+++|+|+|+|++|+|.+|
T Consensus 439 ~e~~~~-~~~~~~~~~~~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~id 517 (694)
T TIGR01846 439 TEPRSA-GLAALPELRGAITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVD 517 (694)
T ss_pred CCccCC-CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 332111 11111222467999999999975 4579999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 421 GQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 421 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
|+|+++++.+++|++|+||||++++|++|++|||++++|++++++++++++.+++++++.++|+ |+||.+||+|.
T Consensus 518 g~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~-----gl~t~i~~~g~ 592 (694)
T TIGR01846 518 GVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQ-----GYNTEVGEKGA 592 (694)
T ss_pred CEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcC-----ccCcEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
+||||||||++||||++++|+++|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|+++++
T Consensus 593 ~LSgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~ 672 (694)
T TIGR01846 593 NLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAES 672 (694)
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEe
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cChhHHhhcCcHHHHHHHHhh
Q psy13349 581 GSHLDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 581 g~~~~l~~~~~~y~~l~~~q~ 601 (604)
|+|+||++++|.|+++|+.|.
T Consensus 673 g~~~~l~~~~~~y~~l~~~~~ 693 (694)
T TIGR01846 673 GRHEELLALQGLYARLWQQQS 693 (694)
T ss_pred CCHHHHHHcCChHHHHHHhhc
Confidence 999999999999999998774
No 14
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-90 Score=735.72 Aligned_cols=552 Identities=27% Similarity=0.322 Sum_probs=478.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13349 40 LLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKHQVLSGNFPMLLRW 118 (604)
Q Consensus 40 ~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~ 118 (604)
....+++.+++++.+.+.+++...++.+..+.... ...+.+ ..+++..+. .++.+.+..... ..+.++...+|+
T Consensus 3 ~i~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~~~---~l~~~~-~~l~~~~~lRa~l~~~~~~~~~-~aa~~~~~~LR~ 77 (559)
T COG4988 3 VISALLAVLSGIAIIAQAALLADILTKLIEGQLFQ---SLLPLL-ILLLIALVLRAFLAWLRERLGY-RAAAKVRASLRQ 77 (559)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHH---HHHHHH-HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH
Confidence 45677888999999999999999999887654211 111122 222222233 556666555443 346678899999
Q ss_pred HHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 119 NFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYTL 198 (604)
Q Consensus 119 ~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~l~~~~~ 198 (604)
++++|+.++++.+-.+.++|++.+.+.+.++.++.++..+++....+.+..+..++.++++||.-++++++.+|++.+++
T Consensus 78 ~~l~~l~~~gp~~~~~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfM 157 (559)
T COG4988 78 LVLDKLAKLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFM 157 (559)
T ss_pred HHHHHHHhCChhhhcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 199 IYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHLLAMLL 278 (604)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (604)
..++++.++..+++.....++++.+.|.++|+.|+|.|+..+...+++.+..+++++.+++..+.......+.+++..++
T Consensus 158 ilvg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~ls 237 (559)
T COG4988 158 ILVGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLS 237 (559)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccc-cccccc
Q psy13349 279 ILGTTGCALFLWTK-GILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNA-KRLVVT 356 (604)
Q Consensus 279 ~~~i~~~g~~lv~~-g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~ 356 (604)
..++.++.++.... |.++......+..+.--++.|+..+...+..-....+........++.+.+..+.... ......
T Consensus 238 iAlvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~ 317 (559)
T COG4988 238 IALVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEP 317 (559)
T ss_pred HHHHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCC
Confidence 87776666666666 8899888888777777677776666555444444433333333444444332211111 111112
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
+-+++.+|++|.|++++++++|+||++++|+++||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||+++
T Consensus 318 ~~ei~~~~l~~~y~~g~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 318 PIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred CceeeecceEEecCCCCcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 23456669999999877899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 437 GMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 437 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+||||+|++|++|+||||++++|+++|+++.++++.+++.+|++. |+ |+||.+||+|.+|||||+||+|+||||
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~-----GLdt~ige~G~~LSgGQ~QRlaLARAl 471 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PD-----GLDTVIGEGGAGLSGGQAQRLALARAL 471 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CC-----cccchhccCCCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999 98 999999999999999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHH
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l 596 (604)
+++++++++|||||+||.+||+.|.+.|.++.+++|+++||||+..+..||+|+|||+|+++|+|+|+||.+++|.|++|
T Consensus 472 l~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~~~~y~~l 551 (559)
T COG4988 472 LSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551 (559)
T ss_pred cCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhcCcHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q psy13349 597 WRHQNK 602 (604)
Q Consensus 597 ~~~q~~ 602 (604)
+.+|+.
T Consensus 552 ~~~q~~ 557 (559)
T COG4988 552 LKQQEG 557 (559)
T ss_pred HHHHhc
Confidence 998865
No 15
>KOG0055|consensus
Probab=100.00 E-value=1.6e-92 Score=803.98 Aligned_cols=571 Identities=29% Similarity=0.344 Sum_probs=488.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTL 102 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 102 (604)
..+.+..-.+..+..+..+.+.+++.++..++..++++.++|.+........ ........+..+.+.+. .+..++...
T Consensus 15 ~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~~~-~~~~~~~~l~~~~lg~~~~~~~~~q~~ 93 (1228)
T KOG0055|consen 15 FFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNKIA-SSEVSKVALYFVYLGVGVFISGFIQVS 93 (1228)
T ss_pred hHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444433345566777888888999999999999999999998764432111 01111111111111111 233334332
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 103 FKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 103 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
.+...++|...++|.++++.+++++..||+.+.+|++.+++++|++.+++.+.+-+..++..+.++++.+++.|++.|.
T Consensus 94 -c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~~W~ 172 (1228)
T KOG0055|consen 94 -CWMRTGERQTARIRSKYLKAILRQDIGWFDTNSTGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYYGWK 172 (1228)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHhCccceeecccccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
++++++...|+.++....+.+.+.+...+.+++.++..+...|++++++||.+|+.|+.+.+++.+..+...+...+...
T Consensus 173 Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~~g~ 252 (1228)
T KOG0055|consen 173 LTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIKKGL 252 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKY 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (604)
+..+...+..++...+....+|+|..++..+..+.|.++.++..+..-...+....+.+..+..+.......++.+++.+
T Consensus 253 ~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~~~~ 332 (1228)
T KOG0055|consen 253 FKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETIDRKP 332 (1228)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhcCCC
Confidence 88888888888888888888999999999999999887776544332222223334455555556666677777777766
Q ss_pred ccccCc-ccccccccCceEEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q psy13349 343 KIVDNY-NAKRLVVTNGKIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419 (604)
Q Consensus 343 ~~~~~~-~~~~~~~~~~~i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i 419 (604)
++.... +........+.|+|+||+|+||.. .++|+|+||+|++|+++||||||||||||++++|.|||+|++|+|++
T Consensus 333 ~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~i 412 (1228)
T KOG0055|consen 333 SIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLI 412 (1228)
T ss_pred CCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEE
Confidence 543322 111222346889999999999974 37999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 420 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
||.|+++++.+++|++||.|+|+|.||++||+|||.||+|+++++++.+|+|.+++++||.++|+ ||||.+||+|
T Consensus 413 dG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~-----g~~T~vge~g 487 (1228)
T KOG0055|consen 413 DGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPD-----GYDTLVGERG 487 (1228)
T ss_pred cCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHH-----hhcccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999 9999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~ 579 (604)
.+|||||||||||||||++||+||+|||||||||+++|+.++++|++.++++|+|+|||||++++++|+|+||++|+|||
T Consensus 488 ~qLSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE 567 (1228)
T KOG0055|consen 488 VQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVE 567 (1228)
T ss_pred CCCChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecChhHHhhcCcHHHHHHHHhh
Q psy13349 580 EGSHLDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 580 ~g~~~~l~~~~~~y~~l~~~q~ 601 (604)
.|+|+||++.+|.|.+|++.|.
T Consensus 568 ~G~h~ELi~~~G~Y~~lv~~Q~ 589 (1228)
T KOG0055|consen 568 QGTHDELIALGGIYSSLVRLQE 589 (1228)
T ss_pred ecCHHHHHhccchHHHHHHHHh
Confidence 9999999999999999999884
No 16
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-90 Score=725.41 Aligned_cols=564 Identities=25% Similarity=0.334 Sum_probs=469.1
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy13349 25 ISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLF 103 (604)
Q Consensus 25 ~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 103 (604)
..|+..+.+ +|+.+++++++++++...++....++||+|...+..+....+ +.......+-++.+. ++..|..++.
T Consensus 5 ~p~i~l~~~-~~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAiag~~~~f--~~~~p~a~VR~~aI~Rt~~RY~ERlv 81 (573)
T COG4987 5 LPYLRLYKR-HKFGLLLGIVLAILTLLASIGLLTLSGWFISASAIAGLAYIF--NVMLPSAGVRGLAILRTAARYVERLV 81 (573)
T ss_pred hHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhccHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356666655 899999999999999999999999999999976544432222 122233445556666 8889999999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 104 KHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYM 183 (604)
Q Consensus 104 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 183 (604)
+|..+. ++...+|.++|+++...++.-..+.++||+++|+..|++++++++...+.+.+.+++...+..+.+.++||.+
T Consensus 82 sH~Atf-rvL~~lRv~~f~kl~p~sp~~~~r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~ 160 (573)
T COG4987 82 SHDATF-RVLSALRVRLFEKLEPLSPALLLRYRSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPL 160 (573)
T ss_pred hhHHHH-HHHHHHHHHHHHhhccCChHHHHhcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 987654 6888999999999999999999999999999999999999999999988888777777777777788999999
Q ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 184 LFPFVIWI-SAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 184 ~lv~l~~~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
++.+.+.+ .+..+++..+.+.-++..++..+..+.+.+++.|.+.|..+++.||+++.+.+.+...-..+.+.+.+..+
T Consensus 161 Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~ 240 (573)
T COG4987 161 ALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQAR 240 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88765554 45556778888888889999999999999999999999999999999999999999988899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhccc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVM-WEIAALFESIGTIQDGMNMLSKK 341 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~ 341 (604)
...+...+..++..+..+..+.+.+..+-.|..+.-...++...++.......-+. ..+..+.+....+.+..+..+.+
T Consensus 241 ~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~ 320 (573)
T COG4987 241 FTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQK 320 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCC
Confidence 99999998888887777645555554555566553223332222222222222122 11222333333334333333333
Q ss_pred cccccCcccccccccCceEEEEEEEEEeCCCC-ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC
Q psy13349 342 YKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKH-LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420 (604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~-~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~ 420 (604)
++...+ +++ .+..+..++++||||+|++++ ++|+|+||++++||++||+|+||||||||+++++|.|+|++|+|.++
T Consensus 321 ~e~~~~-~~~-~~~~~~~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~ 398 (573)
T COG4987 321 PEVTFP-DEQ-TATTGQALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLN 398 (573)
T ss_pred cccCCC-ccc-cCCccceeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeEC
Confidence 332221 111 111122799999999999854 79999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 421 GQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 421 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
|.++..++.+.+|+.+++++|.+++|++|+|||+.+++|++||||++++++++|+++++++.|+ ||||.+||+|.
T Consensus 399 g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~-----gl~t~lge~G~ 473 (573)
T COG4987 399 GVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPD-----GLNTWLGEGGR 473 (573)
T ss_pred CcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChh-----hhhchhccCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
.||||||||+||||+|++|.|++||||||.+||++||+++++.+.+..+|||+|+||||+..++.||||+|||+|+++|+
T Consensus 474 ~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~ 553 (573)
T COG4987 474 RLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEE 553 (573)
T ss_pred cCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cChhHHhhcCcHHHHHHHH
Q psy13349 581 GSHLDLLKKNGLYSRLWRH 599 (604)
Q Consensus 581 g~~~~l~~~~~~y~~l~~~ 599 (604)
|+|+||+.++|.|+++++.
T Consensus 554 G~~~~Ll~~~g~~~~l~q~ 572 (573)
T COG4987 554 GTHAELLANNGRYKRLYQL 572 (573)
T ss_pred CCHHhhhccccHHHHHhcc
Confidence 9999999999999999863
No 17
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=1.5e-89 Score=775.32 Aligned_cols=566 Identities=24% Similarity=0.317 Sum_probs=473.5
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTL 102 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 102 (604)
..+++..+.+++++.++..++++++.+++.++.|+++++++|.+....+.... ....+.++.++..++ .++.++..+
T Consensus 10 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (592)
T PRK10790 10 TLKRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLG--LVAGLAAAYVGLQLLAAGLHYAQSL 87 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchh--HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456667788899999999999999999999999999999987543221110 000111111111122 445566665
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 103 FKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 103 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
+.+ ....++..++|.++|+++++.|+.+|++.++|++++|+++|++.+++++...+..++..++.+++.++++++++|.
T Consensus 88 ~~~-~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 88 LFN-RAAVGVVQQLRTDVMDAALRQPLSAFDTQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544 4566788999999999999999999999999999999999999999999888877777777778788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
+++++++.+|+.+++..++.++.++..++..+..++.++.+.|.++|+++||.|+.++.+.+++.+..++..+...+..+
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998888888777777788888888888888899999999999999999999999999999999888777777666655
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy13349 263 LISSF-EIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKK 341 (604)
Q Consensus 263 ~~~~~-~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (604)
..... ..+..++..+..+++++++++ +..|.+++|.++++..+...+..++..+......+.......++..+.++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 54432 344444444443334344444 5789999999999999998888888777776666666666666666665543
Q ss_pred cccccCcccccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 342 YKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
++..+ . .......+.|+++||+|+|++++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|.+||
T Consensus 326 ~~~~~--~-~~~~~~~~~i~~~~v~f~y~~~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 326 RQQYG--N-DDRPLQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred CccCC--C-CccCCCCCeEEEEEEEEEeCCCCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 22111 1 11112235799999999998666799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCC
Q psy13349 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIK 501 (604)
Q Consensus 422 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~ 501 (604)
.|+++++.+++|++|+||||||++|++|++|||++|+ +++|+++.++++.++++++++++|+ |+||.+||+|.+
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~-----Gldt~i~e~g~~ 476 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPD-----GLYTPLGEQGNN 476 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccc-----cccccccCCCCC
Confidence 9999999999999999999999999999999999998 6899999999999999999999999 999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEec
Q psy13349 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 502 LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g 581 (604)
|||||||||+|||||+++|+|+|||||||+||+++++.|.+.+++..+++|+|+||||++.++.||+|++|++|++++.|
T Consensus 477 LSGGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 477 LSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQG 556 (592)
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred ChhHHhhcCcHHHHHHHHhhc
Q psy13349 582 SHLDLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 582 ~~~~l~~~~~~y~~l~~~q~~ 602 (604)
+|+||+++++.|+++++.|..
T Consensus 557 ~~~~L~~~~~~y~~l~~~~~~ 577 (592)
T PRK10790 557 THQQLLAAQGRYWQMYQLQLA 577 (592)
T ss_pred CHHHHHhCCCHHHHHHHHHhh
Confidence 999999999999999987753
No 18
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=4.9e-90 Score=833.59 Aligned_cols=565 Identities=25% Similarity=0.344 Sum_probs=462.4
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy13349 25 ISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLF 103 (604)
Q Consensus 25 ~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 103 (604)
.++++++++++++.++++++++++.+++.++.|++++.++|.+..... .......+.+ +++++.++ .++.++..++
T Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~l-~~~~~~i~~~~~~~l~~~~ 889 (1466)
T PTZ00265 813 LRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN--LEANSNKYSL-YILVIAIAMFISETLKNYY 889 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH--HHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 345567778888889999999999999999999999999997653211 1000011111 12222222 5556666655
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCcccccc--cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 104 KHQVLSGNFPMLLRWNFHRLILNQSINFFQE--EFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNV 181 (604)
Q Consensus 104 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 181 (604)
. ..+++++..++|.++|++++++|+.||++ +++|++++|+++|++.+++++...+..++..++.+++.++++++++|
T Consensus 890 ~-~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~ 968 (1466)
T PTZ00265 890 N-NVIGEKVEKTMKRRLFENILYQEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCP 968 (1466)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4 46678899999999999999999999986 78999999999999999999888787888888888888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHccHHHHHHhcccHHHH
Q psy13349 182 YMLFPFVIWISAYIYTLIYFIPRLNKTA-ES-----------------QATARSLMTGRITDAYANIMTVKLFSHAGREA 243 (604)
Q Consensus 182 ~l~lv~l~~~~l~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~ 243 (604)
.+++++++++ .++...+.++.+... ++ ..+..++.++.+.|+++|+++||+|+.|+.+.
T Consensus 969 ~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~ 1045 (1466)
T PTZ00265 969 IVAAVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFC 1045 (1466)
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHH
Confidence 9987765433 333444444332211 11 12335677889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 244 NYARFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAA 323 (604)
Q Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~ 323 (604)
+++.+..++..+...+..........+.+++..+..++++++|++++..|.+++|.+++++.+......+...+...+..
T Consensus 1046 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~ 1125 (1466)
T PTZ00265 1046 NLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGD 1125 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998888888888887777788888888888888999999999999999999998775543332233334444445
Q ss_pred HHHHHHHHHHHHHhhccccccccCc-cccc---ccccCceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCC
Q psy13349 324 LFESIGTIQDGMNMLSKKYKIVDNY-NAKR---LVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGA 397 (604)
Q Consensus 324 ~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~---~~~~~~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGs 397 (604)
+..+....++..+.++.+++....+ .... .....+.|+|+||+|+||+ +.++|+|+||+|++|+++||||||||
T Consensus 1126 ~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGs 1205 (1466)
T PTZ00265 1126 SENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGS 1205 (1466)
T ss_pred HHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCC
Confidence 5555555666666666544321111 1111 1122467999999999984 35799999999999999999999999
Q ss_pred cHHHHHHHHhcCCCC------------------------------------------------------CccEEEECCEe
Q psy13349 398 GKSTINNLLLRFYDI------------------------------------------------------KYGEILIDGQN 423 (604)
Q Consensus 398 GKSTl~~ll~~~~~~------------------------------------------------------~~G~I~i~g~~ 423 (604)
|||||+++|+|+|+| ++|+|++||+|
T Consensus 1206 GKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~d 1285 (1466)
T PTZ00265 1206 GKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVD 1285 (1466)
T ss_pred CHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEE
Confidence 999999999999999 69999999999
Q ss_pred CCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 424 ISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 424 ~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
+++++.+++|++|+||||+|+||++||||||++|+|+++++++++|++.+++++||.+||+ ||||.|||+|.+||
T Consensus 1286 i~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~-----GydT~VGe~G~~LS 1360 (1466)
T PTZ00265 1286 ICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPN-----KYDTNVGPYGKSLS 1360 (1466)
T ss_pred HHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcc-----ccCCccCCCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeC----CEE
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDN----GCV 577 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~----G~i 577 (604)
|||||||||||||+++|+|||||||||+||+++|+.|+++|.+.. +++|+|+||||+++++.||+|+||++ |++
T Consensus 1361 GGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~i 1440 (1466)
T PTZ00265 1361 GGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSF 1440 (1466)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCE
Confidence 999999999999999999999999999999999999999999874 68999999999999999999999999 995
Q ss_pred e-EecChhHHhh-cCcHHHHHHHHhh
Q psy13349 578 A-EEGSHLDLLK-KNGLYSRLWRHQN 601 (604)
Q Consensus 578 v-~~g~~~~l~~-~~~~y~~l~~~q~ 601 (604)
+ |+|+|+||++ ++|.|++||+.|+
T Consensus 1441 v~e~Gth~eLl~~~~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1441 VQAHGTHEELLSVQDGVYKKYVKLAK 1466 (1466)
T ss_pred EEEecCHHHHHhcCCChHHHHHhhcC
Confidence 5 8999999998 5999999998763
No 19
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=100.00 E-value=6.2e-89 Score=769.39 Aligned_cols=563 Identities=29% Similarity=0.398 Sum_probs=481.3
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy13349 26 SFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFK 104 (604)
Q Consensus 26 ~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 104 (604)
+++.++++++++.+.+.++++++.+++.++.|++++.++|.+.... ..+ .++++.+++.+. .+..++...+.
T Consensus 8 ~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (588)
T PRK13657 8 ARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG--DIF-----PLLAAWAGFGLFNIIAGVLVARHA 80 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--cHH-----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999999999999999876432 111 111111111111 22233332222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 105 HQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYML 184 (604)
Q Consensus 105 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 184 (604)
.....++..+++.++|+|++++|+.+|++.++|++.+|+++|++++.+.+...+..++..++..++.++++++++|.++
T Consensus 81 -~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 81 -DRLAHRRRLAVLTEYFERIIQLPLAWHSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred -HHHHHHHHHHHHHHHHHHHHhCCHHHHCcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2233445556777999999999999999999999999999999999888777776666666667777778899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 185 FPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLI 264 (604)
Q Consensus 185 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (604)
+++++++++++++..++.++.++..++..+..+++.+.+.|.++|+++||.|+.++.+.+++.+..++..+...+..+..
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888888999999999999999999999999999999999999999999999999999999988888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy13349 265 SSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKI 344 (604)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (604)
.....+.+++..+..++++++|++++.+|.+|+|.++++..++..+..++..+......+..+...+++..+.++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777777777788888899999999999999999999999988888887777666666666666666666665543322
Q ss_pred ccCcccccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC
Q psy13349 345 VDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424 (604)
Q Consensus 345 ~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~ 424 (604)
.+..+........+.|+++||+|+|++++++|+|+||+++|||+++|+|+||||||||+++|+|+|+|++|+|.+||.++
T Consensus 320 ~~~~~~~~~~~~~~~I~~~~vsf~y~~~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i 399 (588)
T PRK13657 320 RDPPGAIDLGRVKGAVEFDDVSFSYDNSRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDI 399 (588)
T ss_pred CCCCCCCCcCCCCCeEEEEEEEEEeCCCCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEh
Confidence 11111111111235799999999998656799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 425 SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 425 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
++++.+++|++|+||||+|++|++|++|||++++|+++|++++++++.+++++++.++|+ |+||.+|++|.+|||
T Consensus 400 ~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~-----gldt~i~~~g~~LSg 474 (588)
T PRK13657 400 RTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPD-----GYDTVVGERGRQLSG 474 (588)
T ss_pred hhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcc-----cccchhcCCCCCCCH
Confidence 999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~ 584 (604)
||||||+|||||+++|+++|||||||+||+++++.+.+.+++..+++|+|+||||++.++.||+|++|++|++++.|+|+
T Consensus 475 Gq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~ 554 (588)
T PRK13657 475 GERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFD 554 (588)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999999887899999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHHhh
Q psy13349 585 DLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 585 ~l~~~~~~y~~l~~~q~ 601 (604)
||++.++.|+++++.+.
T Consensus 555 ~l~~~~~~y~~l~~~~~ 571 (588)
T PRK13657 555 ELVARGGRFAALLRAQG 571 (588)
T ss_pred HHHHCCChHHHHHHHhh
Confidence 99999999999998663
No 20
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=100.00 E-value=1.4e-88 Score=764.15 Aligned_cols=564 Identities=27% Similarity=0.380 Sum_probs=482.8
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy13349 25 ISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLF 103 (604)
Q Consensus 25 ~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 103 (604)
.++++++.+++|+.++..++++++.+++.++.|+++++++|.+...+. .. ..++.++ +..++ .+..++...+
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-~~-----~~~~~~~-~~~~~~~~~~~~~~~~ 79 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-VL-----PTLALWA-GFGVFNTIAYVLVARE 79 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-HH-----HHHHHHH-HHHHHHHHHHHHHHHH
Confidence 456778889999999999999999999999999999999998764322 11 0111111 11111 2333333332
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 104 KHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYM 183 (604)
Q Consensus 104 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 183 (604)
. ..+..++..++|.++|+|++++|+.+|+++++|++++|+++|++.+++++...+..++..++.+++.+++++.++|.+
T Consensus 80 ~-~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 158 (585)
T TIGR01192 80 A-DRLAHGRRATLLTEAFGRIISMPLSWHQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRL 158 (585)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 233445666778899999999999999999999999999999999999888877777777777777778889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 184 LFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRL 263 (604)
Q Consensus 184 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 263 (604)
++++++.+|+++++..++.++.++..++..+..+++.+.+.|.++|+++||+||.++.+.+++.+..+++.+...+..+.
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (585)
T TIGR01192 159 SIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDW 238 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999998888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy13349 264 ISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYK 343 (604)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (604)
......+..++..+..++++++|++++.+|.+++|.++++..++..+..++..+......+..+....++..+.++.+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~ 318 (585)
T TIGR01192 239 WALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQ 318 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 77777777777777788888999999999999999999999998888877766666665555555666666555554332
Q ss_pred cccCcccccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEe
Q psy13349 344 IVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423 (604)
Q Consensus 344 ~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~ 423 (604)
..+...........+.++++||+|+|++++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||.+
T Consensus 319 ~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 398 (585)
T TIGR01192 319 REEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGID 398 (585)
T ss_pred ccCCccCCCCCCCCCeEEEEEEEEECCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEE
Confidence 21111111111123569999999999865679999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 424 ISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 424 ~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
+++++.+++|++++||||+|++|++|++|||.++.|++++++++++++.+++++++.++|+ |+||.+|++|.+||
T Consensus 399 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~-----g~~t~~~~~~~~LS 473 (585)
T TIGR01192 399 INTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSN-----GYDTLVGERGNRLS 473 (585)
T ss_pred hhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccc-----cccchhcCCCCCCC
Confidence 9999999999999999999999999999999999998999999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecCh
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~ 583 (604)
||||||++|||||+++|+++|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 474 gGq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~ 553 (585)
T TIGR01192 474 GGERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553 (585)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCH
Confidence 99999999999999999999999999999999999999999988889999999999999999999999999999999999
Q ss_pred hHHhhcCcHHHHHHHHhh
Q psy13349 584 LDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 584 ~~l~~~~~~y~~l~~~q~ 601 (604)
+|+++++|.|+++|+.|.
T Consensus 554 ~~l~~~~~~y~~l~~~~~ 571 (585)
T TIGR01192 554 QELIQKDGRFYKLLRRSG 571 (585)
T ss_pred HHHHHCCChHHHHHHhCc
Confidence 999999999999998764
No 21
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=100.00 E-value=1.3e-88 Score=765.28 Aligned_cols=564 Identities=28% Similarity=0.387 Sum_probs=495.1
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy13349 26 SFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFK 104 (604)
Q Consensus 26 ~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 104 (604)
++++++.+++++.++.+++++++.+++.+..|++++.++|.......... ...+..+++++.++ .++.++..++.
T Consensus 3 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~----~~~~~~~~~~~~i~~~~~~~~~~~~~ 78 (571)
T TIGR02203 3 RRLWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSV----LWWVPLVVIGLAVLRGICSFVSTYLL 78 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCchhH----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677788899999999999999999999999999999997664332111 11222122222233 56666766654
Q ss_pred HHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 105 HQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYML 184 (604)
Q Consensus 105 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 184 (604)
+ ....++...+|..+++++++.|.++|++.+.|++.+|+++|++.+++++...+..++..++.++++++++++++|.++
T Consensus 79 ~-~~~~~~~~~lr~~l~~~~~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~ 157 (571)
T TIGR02203 79 S-WVSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLT 157 (571)
T ss_pred H-HHHHHHHHHHHHHHHHHHHcCCHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3 557789999999999999999999999999999999999999999999988888888888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 185 FPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLI 264 (604)
Q Consensus 185 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (604)
+++++.+|+.+++..++.++.++...+..+..++..+.+.|.++|+++||.++.++.+.+++.+..++..+...+..+..
T Consensus 158 ~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (571)
T TIGR02203 158 LIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAG 237 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy13349 265 SSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKI 344 (604)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (604)
.+...+..++..+..++++++|++++.+|.+|+|.++++..++..+..|+..+......+.......++..+.++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (571)
T TIGR02203 238 SISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEK 317 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888888899999999999999999999999998888887766666655555555566655555443322
Q ss_pred ccCcccccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEe
Q psy13349 345 VDNYNAKRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423 (604)
Q Consensus 345 ~~~~~~~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~ 423 (604)
.+. .....+..+.++++||+|+|++ ++++|+|+||++++||+++|+|+||||||||+++|+|+|+|++|+|++||.+
T Consensus 318 ~~~--~~~~~~~~~~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~ 395 (571)
T TIGR02203 318 DTG--TRAIERARGDVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHD 395 (571)
T ss_pred CCC--CCCCCCCCCeEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEe
Confidence 111 1111122357999999999976 4679999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCC-CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 424 ISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRP-DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 424 ~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~-~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
+++++.+++|++++||||+|++|++|++|||++++| +.+++++.++++.+++++++.++|+ |+||.+||+|.+|
T Consensus 396 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~-----gldt~i~~~g~~L 470 (571)
T TIGR02203 396 LADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPL-----GLDTPIGENGVLL 470 (571)
T ss_pred HHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcC-----cccceecCCCCcC
Confidence 999999999999999999999999999999999987 7999999999999999999999999 9999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecC
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~ 582 (604)
||||||||+||||++++|||++||||||+||+++++.+.+.|++..+++|+|+||||++.++.||+|++|++|++++.|+
T Consensus 471 SgGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~ 550 (571)
T TIGR02203 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGT 550 (571)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred hhHHhhcCcHHHHHHHHhh
Q psy13349 583 HLDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 583 ~~~l~~~~~~y~~l~~~q~ 601 (604)
|+++++.++.|+++++.+.
T Consensus 551 ~~~l~~~~~~~~~~~~~~~ 569 (571)
T TIGR02203 551 HNELLARNGLYAQLHNMQF 569 (571)
T ss_pred HHHHHHcCCHHHHHHHHhh
Confidence 9999999999999998764
No 22
>KOG0056|consensus
Probab=100.00 E-value=1.7e-92 Score=724.47 Aligned_cols=553 Identities=30% Similarity=0.447 Sum_probs=460.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHhh
Q psy13349 38 YILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS------TVFVGLQTLFKHQVLSGN 111 (604)
Q Consensus 38 ~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 111 (604)
..+..+++.++.-++....|.+.++++|.+....... .+.+...++...+- .+++.+++++ ...+.+-
T Consensus 216 ~v~~cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~~-----~~~~~~~v~L~flqg~gtgsG~~~nlRtfL-Wi~VqQy 289 (790)
T KOG0056|consen 216 RVVFCLFLLIIGRLINVSLPILSKWIVDELTAPDTFQ-----YSLVFLYVFLKFLQGGGTGSGFLNNLRTFL-WIPVQQY 289 (790)
T ss_pred HHHHHHHHHHHHHHHhhhhHHhHHHHHHhhcCcchhh-----HHHHHHHHHHHHHhcCCccccchhhhheeE-EEEhhHh
Confidence 3444455556666778889999999999987322111 11111111111111 3333444432 1223444
Q ss_pred HHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Q psy13349 112 FPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIY-IVTILTIIGTFNVYMLFPFVIW 190 (604)
Q Consensus 112 ~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~-~i~~~~~l~~~~~~l~lv~l~~ 190 (604)
..+++..++|+|+.++++.|+-++++|+++.-+++..+.+. ++.....++...+.- .++.+.+...+||++++++++.
T Consensus 290 ttR~ie~~lfrHlh~LSlrwHL~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~ 368 (790)
T KOG0056|consen 290 TTREIETELFRHLHNLSLRWHLNRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLM 368 (790)
T ss_pred HHHHHHHHHHHHHHhhceeeeecccccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHH
Confidence 56678889999999999999999999999887766655544 322222222112222 2223445568999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 191 ISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEII 270 (604)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (604)
+.+++.+...+.....+..+++..+..+..++-.|++.+.+|+|-||+|+++.++++++..+|.+...|....-...+..
T Consensus 369 m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~ 448 (790)
T KOG0056|consen 369 MLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIV 448 (790)
T ss_pred HHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988777777777778877777777888899999999999999999999999999999988877766555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccc
Q psy13349 271 NHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNA 350 (604)
Q Consensus 271 ~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 350 (604)
...+..+..++--.+.+|++..+.+|+|+++.+.+|..++..|++|+...+..+..+...+++.++.+++++++.|.++.
T Consensus 449 Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P~a 528 (790)
T KOG0056|consen 449 QNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLPGA 528 (790)
T ss_pred hhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCCCC
Confidence 55554444444445556777789999999999999999999999999888888888888999999999999888877776
Q ss_pred ccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH
Q psy13349 351 KRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430 (604)
Q Consensus 351 ~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~ 430 (604)
.+.....|.|+|+||+|.|++++|+|+||||+++||+.+|+|||||+||||++++|.|||+.++|.|.|||+|+++....
T Consensus 529 ~pl~~~~G~i~fsnvtF~Y~p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 529 PPLKVTQGKIEFSNVTFAYDPGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQS 608 (790)
T ss_pred CCccccCCeEEEEEeEEecCCCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHH
Confidence 66656678999999999999889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
++|++||.||||..||++||.+||.+|+|++++||+++|++.|++||.|..+|+ ||+|.|||+|-+||||||||+
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPe-----gY~t~VGERGLkLSGGEKQRV 683 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPE-----GYNTRVGERGLKLSGGEKQRV 683 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCch-----hhhhhhhhcccccCCcchhhH
Confidence 999999999999999999999999999999999999999999999999999999 999999999999999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhc-
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK- 589 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~- 589 (604)
||||+++|+|.|++|||+|||||..+|+.|+.++.+...++|.|+|+||+|++-+||.|+|+++|+|+|.|+|+||+++
T Consensus 684 AiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rd 763 (790)
T KOG0056|consen 684 AIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRD 763 (790)
T ss_pred HHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CcHHHHHHHHhhc
Q psy13349 590 NGLYSRLWRHQNK 602 (604)
Q Consensus 590 ~~~y~~l~~~q~~ 602 (604)
+|.|++||+.|+.
T Consensus 764 gG~Ya~MWq~qqa 776 (790)
T KOG0056|consen 764 GGAYADMWQAQQA 776 (790)
T ss_pred CCcHHHHHHHHHh
Confidence 8899999987764
No 23
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=100.00 E-value=5.2e-88 Score=753.24 Aligned_cols=524 Identities=24% Similarity=0.287 Sum_probs=443.8
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy13349 26 SFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFK 104 (604)
Q Consensus 26 ~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 104 (604)
++++++.+++++.++..++++++.+++.++.|+++++++|.+..... .. .....+..++++.+. .++.++..++.
T Consensus 2 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 77 (529)
T TIGR02868 2 LRILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP-VL---YLSVAAVAVRAFGIGRAVFRYLERLVG 77 (529)
T ss_pred hhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch-hH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34667888999999999999999999999999999999998654321 11 010111111112222 55566666554
Q ss_pred HHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 105 HQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYML 184 (604)
Q Consensus 105 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 184 (604)
+ ....++..++|.++|+|++++|..+|++.++|++++|+++|++.+++++...+..++..++.+++.++++++++|.++
T Consensus 78 ~-~~~~~~~~~lr~~~~~~ll~~~~~~~~~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 156 (529)
T TIGR02868 78 H-DAALRSLGRLRVRVYDRLARLALAGRRRFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAA 156 (529)
T ss_pred H-HHHHHHHHHHHHHHHHHhhccCccccccCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3 456678899999999999999999999999999999999999999999988877777777777888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 185 FPFVIWISAYIYTLIYFIP-RLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRL 263 (604)
Q Consensus 185 lv~l~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 263 (604)
+++++.+|++.++...+.+ ..++..++..+..+++.+.+.|.++|+++||+|+.|+.+.+++++..+++.+...+..+.
T Consensus 157 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (529)
T TIGR02868 157 LVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARA 236 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9988887776665544444 445566777888899999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy13349 264 ISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYK 343 (604)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (604)
......+..++..+..++++++|++++.+|.+|+|.++++..+...+..++..+......+.......++..+.++.+++
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~ 316 (529)
T TIGR02868 237 TGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGP 316 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 88877888888888888888999999999999999999999998888777666655555565666666666666654433
Q ss_pred cccCccc--ccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 344 IVDNYNA--KRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 344 ~~~~~~~--~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
..+.+.. ....+..+.|+++||+|+|++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 317 ~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g 396 (529)
T TIGR02868 317 RPEGVVPAAGALGLGKPTLELRDLSFGYPGSPPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDG 396 (529)
T ss_pred cCCCCCCCCcccCCCCceEEEEEEEEecCCCCceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECC
Confidence 2111111 11111235799999999998766799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCC
Q psy13349 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIK 501 (604)
Q Consensus 422 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~ 501 (604)
+|++++ .+++|++|+||||+|++|++||+|||++|+|+++++++++|++.+++++++.++|+ ||||.+||+|.+
T Consensus 397 ~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~-----GldT~ige~G~~ 470 (529)
T TIGR02868 397 VSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPD-----GLDTVLGEGGAR 470 (529)
T ss_pred EEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcc-----cccchhccccCc
Confidence 999999 99999999999999999999999999999999999999999999999999999999 999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccCh
Q psy13349 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560 (604)
Q Consensus 502 LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l 560 (604)
||||||||||||||++++|||+|||||||+||+++|+.|++.+.+..+++|+|+||||+
T Consensus 471 LSGGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 471 LSGGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 99999999999999999999999999999999999999999999888899999999995
No 24
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=100.00 E-value=3.5e-87 Score=754.33 Aligned_cols=567 Identities=29% Similarity=0.412 Sum_probs=491.2
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTL 102 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 102 (604)
..++++++.+++++.+...++++++.+++.++.|++++.++|.+........ ...++.+.+++.++ .+..+++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 80 (576)
T TIGR02204 5 PLAALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSSGL----LNRYFAFLLVVALVLALGTAARFY 80 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccHHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567788889999999999999999999999999999999998553322111 11111112222222 444555555
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 103 FKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 103 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
+.+ .+..++...+|..++++++++|..+|++.+.|++.+|+++|++.+++++...+..++..++.+++.+++++.++|.
T Consensus 81 ~~~-~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (576)
T TIGR02204 81 LVT-WLGERVVADIRRAVFAHLISLSPSFFDKNRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPK 159 (576)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcCCHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 443 4567889999999999999999999999999999999999999999998888777777777777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
+++++++.+|+.+++..++.++.++..++..+..+++.+.+.|.++|+++||.++.++.+.+++++..++..+...+..+
T Consensus 160 l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (576)
T TIGR02204 160 LTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR 239 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888899999999999999999999999999999999999999999999999999888888877777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKY 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (604)
...+...+..++..+..++++++|++++..|.+|+|.++++..++.++..++..+.....++.......++..+.++.++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~ 319 (576)
T TIGR02204 240 TRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEP 319 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77666666666666667777889999999999999999999999998888888877777777777777777777665443
Q ss_pred ccccCcccccc-cccCceEEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q psy13349 343 KIVDNYNAKRL-VVTNGKIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419 (604)
Q Consensus 343 ~~~~~~~~~~~-~~~~~~i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i 419 (604)
+.......... .+..+.|+++||+|+|+++ +++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+
T Consensus 320 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i 399 (576)
T TIGR02204 320 DIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILL 399 (576)
T ss_pred cCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 22111111111 1123569999999999752 57999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 420 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
||.++++++.+++|++|+|+||+|++|++|++|||++++|+.++++++++++.++++++++++|+ |+||.+||+|
T Consensus 400 ~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~-----gl~t~i~~~g 474 (576)
T TIGR02204 400 DGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE-----GYDTYLGERG 474 (576)
T ss_pred CCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCC-----CCCceeCCCC
Confidence 99999999999999999999999999999999999999998999999999999999999999999 9999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~ 579 (604)
.+||||||||++||||++++|+++|||||||+||+++++.+++.+++..+++|+|+||||++.++.||+|++|++|++++
T Consensus 475 ~~LSgGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~ 554 (576)
T TIGR02204 475 VTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVA 554 (576)
T ss_pred CcCCHHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEe
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred ecChhHHhhcCcHHHHHHHHh
Q psy13349 580 EGSHLDLLKKNGLYSRLWRHQ 600 (604)
Q Consensus 580 ~g~~~~l~~~~~~y~~l~~~q 600 (604)
.|+|++++++++.|+++++.|
T Consensus 555 ~g~~~~l~~~~~~~~~l~~~~ 575 (576)
T TIGR02204 555 QGTHAELIAKGGLYARLARLQ 575 (576)
T ss_pred eecHHHHHHcCChHHHHHhhc
Confidence 999999999999999999876
No 25
>KOG0057|consensus
Probab=100.00 E-value=1.3e-88 Score=711.27 Aligned_cols=556 Identities=29% Similarity=0.395 Sum_probs=463.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHH
Q psy13349 37 KYILLVIFFTTLTGTFEALLFAAMGKIIDLLS--NIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQVLSGNFPM 114 (604)
Q Consensus 37 ~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 114 (604)
...+.++++.+.+-++....|.+++..+|.+. .+.+ ..+......+...++.-+...+++.++..+ +.++.+++.+
T Consensus 30 ~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F~el~~~v-fa~v~q~~iR 107 (591)
T KOG0057|consen 30 FRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVFNELRNFV-FAKVAQRVIR 107 (591)
T ss_pred ehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 33445555555668899999999999999874 2222 111111111111111112225666666654 3456778888
Q ss_pred HHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Q psy13349 115 LLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTIL-TIIGTFNVYMLFPFVIWISA 193 (604)
Q Consensus 115 ~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~-~~l~~~~~~l~lv~l~~~~l 193 (604)
+.-.++|.|+++++.++|.++.+|++.+.+++...++..++...+..++..++.+..+. .+-..+.+..+++.+..+..
T Consensus 108 ~~~~~vf~~~~~ld~~~~~~~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~ 187 (591)
T KOG0057|consen 108 DSSSDVFRHLMSLDLSFFLSRGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGA 187 (591)
T ss_pred HHHHHHHHHHHhhhHHhhcCCCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999988776666655554443333 33345667777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 194 YIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHL 273 (604)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (604)
|..+......+..+..++..++.......+.|++.+.++||.||.|+++.+++.....++.+...+........+.....
T Consensus 188 Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~ 267 (591)
T KOG0057|consen 188 YAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKA 267 (591)
T ss_pred hheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHH
Confidence 77777777777777788888999999999999999999999999999999999999999999988888888888888777
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcccccc
Q psy13349 274 LAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRL 353 (604)
Q Consensus 274 ~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 353 (604)
+..+....++..+..-+.+|.+|+|.++....+..++..++..+...+..+.+....+.+.+...+......+. +.+.
T Consensus 268 iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~--~~~i 345 (591)
T KOG0057|consen 268 IFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA--ALPI 345 (591)
T ss_pred HHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc--cCCc
Confidence 77777767777777767889999999999999999888887777777777777776666655443332222111 1122
Q ss_pred cccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q psy13349 354 VVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLR 433 (604)
Q Consensus 354 ~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r 433 (604)
...++.|+|+||+|+|++++++|+++||+|++||++||||+|||||||++++|.||++ ++|+|+|||+|+++++++++|
T Consensus 346 ~~~~~~I~F~dV~f~y~~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR 424 (591)
T KOG0057|consen 346 ELFGGSIEFDDVHFSYGPKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLR 424 (591)
T ss_pred ccCCCcEEEEeeEEEeCCCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhh
Confidence 2345679999999999988889999999999999999999999999999999999999 999999999999999999999
Q ss_pred ccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 434 EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
+.||+||||..||++||.+||.+|+|++++||+.++||.+++||.+.++|+ ||+|.|||+|..||||||||++||
T Consensus 425 ~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~-----GY~T~VGerG~~LSGGekQrvsla 499 (591)
T KOG0057|consen 425 QSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPD-----GYQTLVGERGLMLSGGEKQRVSLA 499 (591)
T ss_pred hheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccc-----cchhhHhhcccccccchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHH
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLY 593 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y 593 (604)
||++|||||+++|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|+++|+|+++|.|+|+||++..+.|
T Consensus 500 Ra~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~~s~~~ 579 (591)
T KOG0057|consen 500 RAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLAPSELY 579 (591)
T ss_pred HHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhhhhhHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhc
Q psy13349 594 SRLWRHQNK 602 (604)
Q Consensus 594 ~~l~~~q~~ 602 (604)
+++|..|..
T Consensus 580 ~~~w~~~~~ 588 (591)
T KOG0057|consen 580 ADLWTTQTS 588 (591)
T ss_pred HHHhccccc
Confidence 999987754
No 26
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=100.00 E-value=3.4e-86 Score=743.30 Aligned_cols=548 Identities=23% Similarity=0.322 Sum_probs=463.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy13349 45 FTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQVLSGNFPMLLRWNFHRLI 124 (604)
Q Consensus 45 l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l 124 (604)
++++.+++.++.|++++.++|.+....... . ....+...++++.++..++.++.+++.+ ....++..++|.++|+|+
T Consensus 3 ~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~lr~~l~~~l 79 (569)
T PRK10789 3 LLIIIAMLQLIPPKVVGIIVDGVTEQHMTT-G-QILMWIGTMVLIAVVVYLLRYVWRVLLF-GASYQLAVELREDFYRQL 79 (569)
T ss_pred ehHHHHHHHHHHHHHHHHHHHHhccCCcch-h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH
Confidence 456777888899999999999875432111 0 0111111111111122555666665554 356788999999999999
Q ss_pred HcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 125 LNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTII-GTFNVYMLFPFVIWISAYIYTLIYFIP 203 (604)
Q Consensus 125 l~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l-~~~~~~l~lv~l~~~~l~~~~~~~~~~ 203 (604)
+++|+.+|++.++|++++|+++|++.++..+...+..++..++..++.++++ +.++|.+++++++.+|+.+++..++.+
T Consensus 80 l~~~~~~~~~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~ 159 (569)
T PRK10789 80 SRQHPEFYLRHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGD 159 (569)
T ss_pred HcCCHHHHcCCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998777666666655544444444444 579999999999888998888889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 204 RLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTT 283 (604)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 283 (604)
+.++..++.++..+++.+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+..+.......+......+..++++
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 239 (569)
T PRK10789 160 QLHERFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAI 239 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999888888888888777777776777777777788
Q ss_pred HHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcccccccccCceEEEE
Q psy13349 284 GCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFK 363 (604)
Q Consensus 284 ~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~ 363 (604)
++|++++.+|.+|+|.++++..+...+..|+..+...+..+.......++..+.++.+++..+. ....+...+.|+++
T Consensus 240 ~~g~~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~--~~~~~~~~~~I~~~ 317 (569)
T PRK10789 240 GGGSWMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDG--SEPVPEGRGELDVN 317 (569)
T ss_pred HHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCC--CCCCCCCCCcEEEE
Confidence 8999999999999999999999998888877666665555555555666665655543322111 11111223579999
Q ss_pred EEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEccc
Q psy13349 364 NVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQD 442 (604)
Q Consensus 364 ~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~ 442 (604)
||+|+|++ ++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||+++++++.+++|++++||||+
T Consensus 318 ~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~ 397 (569)
T PRK10789 318 IRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQT 397 (569)
T ss_pred EEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccC
Confidence 99999976 35799999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCe
Q psy13349 443 TSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI 522 (604)
Q Consensus 443 ~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~i 522 (604)
|++|++|++|||++++|++++++++++++.+++++++.++|+ |+||.+|++|.+||||||||++||||++++|++
T Consensus 398 ~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~-----gl~t~~~~~g~~LSgGq~qRi~lARall~~~~i 472 (569)
T PRK10789 398 PFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQ-----GYDTEVGERGVMLSGGQKQRISIARALLLNAEI 472 (569)
T ss_pred CeeccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcC-----cccceecCCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999989999999999999999999999999 999999999999999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHHHhhc
Q psy13349 523 LLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 523 lilDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~~q~~ 602 (604)
+|||||||+||+++++.+.+.|++..+++|+|+||||+++++.||+|++|++|+++++|+|+|++++++.|+++|+.|..
T Consensus 473 lllDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~y~~l~~~~~~ 552 (569)
T PRK10789 473 LILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQQL 552 (569)
T ss_pred EEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHcCChHHHHHHHhhh
Confidence 99999999999999999999999887899999999999999999999999999999999999999999999999987653
No 27
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=100.00 E-value=2.4e-84 Score=723.79 Aligned_cols=526 Identities=25% Similarity=0.300 Sum_probs=450.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhH
Q psy13349 35 VRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLS-NIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKHQVLSGNF 112 (604)
Q Consensus 35 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~-~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 112 (604)
+|+.+..+++++++.+++.++.|+++++++|.+. ...... ....+..+++++.++ .++.++..++.+ .+..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 75 (529)
T TIGR02857 1 ARRALALLGLLGALGALLIIAQAWLLARVIDGLISAGEPLA----ELLPALGALALAVLLRALLGWLGERAAA-RAAAAV 75 (529)
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCChH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 3567888999999999999999999999999874 322111 111111122222222 566677776554 456788
Q ss_pred HHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 113 PMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWIS 192 (604)
Q Consensus 113 ~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~ 192 (604)
..++|.++|+|++++|..+|++.++|++++|+++|++.+++++...+..++..++.+++.+++++.++|.+++++++.+|
T Consensus 76 ~~~lr~~l~~~l~~~~~~~~~~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~ 155 (529)
T TIGR02857 76 KSQLRERLLAAVAALGPGWLQGRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAP 155 (529)
T ss_pred HHHHHHHHHHHHHhCCchhhccCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877777777777777788889999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 193 AYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINH 272 (604)
Q Consensus 193 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 272 (604)
+..++..++.++.++..++.++..+++.+.+.|.++|+++||+|+.|+.+.+++++..+++.+...+..+.......+..
T Consensus 156 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02857 156 LIPIFMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLE 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888888999999999999999999999999999999999999999999988888888887777777777
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccccc
Q psy13349 273 LLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKR 352 (604)
Q Consensus 273 ~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 352 (604)
++..+..+++++++++.+..|.+|+|.++++..++..+..++..+...+..+.......++..+.++.+++..+ ..+.+
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~-~~~~~ 314 (529)
T TIGR02857 236 LFATLSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAG-KAPVT 314 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CcCCC
Confidence 77777666666677777789999999999999998888887776666666666666667776666653321111 11111
Q ss_pred ccccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH
Q psy13349 353 LVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES 431 (604)
Q Consensus 353 ~~~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~ 431 (604)
.+..+.|+++||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||.|+++++.++
T Consensus 315 -~~~~~~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~ 393 (529)
T TIGR02857 315 -AAPAPSLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADS 393 (529)
T ss_pred -CCCCCeEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHH
Confidence 1123579999999999864 47999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
+|++++||||+|++|++|++|||+++.|+++++++.++++.++++++++++|+ |+||.+||+|.+||||||||++
T Consensus 394 lr~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~-----Gldt~v~e~g~~LSgGq~qri~ 468 (529)
T TIGR02857 394 WRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQ-----GLDTLIGEGGAGLSGGQAQRLA 468 (529)
T ss_pred HHhheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcc-----cccchhccccccCCHHHHHHHH
Confidence 99999999999999999999999999998999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEE
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl 572 (604)
||||++++|+++|||||||+||+++++.+.+.+.+..+++|+|+||||+++++.||+|++|
T Consensus 469 laRal~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 469 LARAFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred HHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 9999999999999999999999999999999999888899999999999999999999986
No 28
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=100.00 E-value=5.6e-83 Score=714.33 Aligned_cols=537 Identities=19% Similarity=0.216 Sum_probs=454.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhh
Q psy13349 33 YGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKHQVLSGN 111 (604)
Q Consensus 33 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 111 (604)
+++|+.++..++++++.+++.++.|++++.++|.+....+.. ....+..+++++.++ .++.+++.++.+ ....+
T Consensus 2 ~~~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 76 (544)
T TIGR01842 2 SKNKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSVP----TLLMLTVLALGLYLFLGLLDALRSFVLV-RIGEK 76 (544)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCchh----HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHH
Confidence 567888899999999999999999999999999875332211 011111122222222 556666666543 45678
Q ss_pred HHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 112 FPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVI-IGDILVFITIYIVTILTIIGTFNVYMLFPFVIW 190 (604)
Q Consensus 112 ~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~-~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~ 190 (604)
+..++|.++|+|++++|+.. .+...+++.+|++.+++++.. .+..+...++.++ .+++++.++|.+++++++.
T Consensus 77 ~~~~lr~~~~~~ll~~~~~~-----~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~ 150 (544)
T TIGR01842 77 LDGALNQPIFAASFSATLRR-----GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGG 150 (544)
T ss_pred HHHHHHHHHHHHHhcCcccC-----ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHH
Confidence 89999999999999999842 355678889999999998766 4444444444433 4467889999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 191 ISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEII 270 (604)
Q Consensus 191 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 (604)
+|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.+++.+..+++.+...+..+.......+
T Consensus 151 ~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (544)
T TIGR01842 151 AVVLVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNL 230 (544)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88887777778888888888899999999999999999999999999999999999999999888888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCccc
Q psy13349 271 NHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNA 350 (604)
Q Consensus 271 ~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 350 (604)
..++..+..++++++|++++.+|.+|+|.++++..++..+..++..+......+.......++..+.++.+++..+ .
T Consensus 231 ~~~~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~--~- 307 (544)
T TIGR01842 231 SKYFRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDP--A- 307 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccC--C-
Confidence 7777777778888999999999999999999999999888888777777666666666666666666654332111 1
Q ss_pred ccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH
Q psy13349 351 KRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ 429 (604)
Q Consensus 351 ~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~ 429 (604)
...+...+.++++||+|+|++ ++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|.+||.++++++.
T Consensus 308 ~~~~~~~~~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~ 387 (544)
T TIGR01842 308 MPLPEPEGHLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR 387 (544)
T ss_pred CCCCCCCCeEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH
Confidence 111122357999999999975 3579999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 430 ESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 430 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+++|++++||||+|++|++|++||++++++++++++++++++.++++++++++|+ |+||.+||+|.+||||||||
T Consensus 388 ~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-----gl~t~~~~~g~~LSgGq~qr 462 (544)
T TIGR01842 388 ETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPD-----GYDTVIGPGGATLSGGQRQR 462 (544)
T ss_pred HHHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcc-----ccccccCCCcCCCCHHHHHH
Confidence 9999999999999999999999999988888899999999999999999999999 99999999999999999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhh
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
++||||++++|+++|||||||+||+++++.+.+.+++.. +++|+|+||||++.++.||+|++|++|++++.|+|+|+++
T Consensus 463 l~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 463 IALARALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred HHHHHHHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999999999998875 6899999999999999999999999999999999999875
No 29
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=2e-83 Score=783.49 Aligned_cols=544 Identities=22% Similarity=0.271 Sum_probs=444.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13349 41 LVIFFTTLTGTFEALLFAAMGKIIDLLSNI-KPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKHQVLSGNFPMLLRW 118 (604)
Q Consensus 41 ~~~~l~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~ 118 (604)
..+++.++..++..+.++.+++..|..... +.... .. ++. +.+++.++ .++.++..++. ...+.+...++|.
T Consensus 969 ~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~~~~---~~-~~~-iy~~l~i~~~~~~~~~~~~~-~~~~~~~~~~l~~ 1042 (1522)
T TIGR00957 969 LSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQNNT---SL-RLS-VYGALGILQGFAVFGYSMAV-SIGGIQASRVLHQ 1042 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCCc---ch-HHH-HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 334444555666777787777777642211 11111 01 111 11112222 33444444433 3456788999999
Q ss_pred HHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 119 NFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYTL 198 (604)
Q Consensus 119 ~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~l~~~~~ 198 (604)
++++++++.|+.||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.+++++++.+++++++.
T Consensus 1043 ~l~~~ll~~p~~ff~~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~~~~~~~~~~~~~~~~~~~ 1122 (1522)
T TIGR00957 1043 DLLHNKLRSPMSFFERTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLATPIAAVIIPPLGLLYFFVQ 1122 (1522)
T ss_pred HHHHHHHcCChhHhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998888888888888888888888888888777776666777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 199 IYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHLLAMLL 278 (604)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 278 (604)
.++.+..++..+...+..+.+.+.+.|+++|+++||+|+.++++.+++.+..+...+..........+......++..+
T Consensus 1123 ~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1201 (1522)
T TIGR00957 1123 RFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPSIVANRWLAVRLECVGNC- 1201 (1522)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 7777777887788888899999999999999999999999998888877777666666655555556665555554332
Q ss_pred HHHHHHHHHHHHh-hCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC-cc--ccccc
Q psy13349 279 ILGTTGCALFLWT-KGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDN-YN--AKRLV 354 (604)
Q Consensus 279 ~~~i~~~g~~lv~-~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~--~~~~~ 354 (604)
++++++++.+. .|.++.|.+.+++.|+..+..++.++......+-.....+++..+.++.+++.... +. ..+.+
T Consensus 1202 --~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~w 1279 (1522)
T TIGR00957 1202 --IVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSETEKEAPWQIQETAPPSGW 1279 (1522)
T ss_pred --HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCCCC
Confidence 33344444443 57899999999999999998888887777777777777777777776544332110 11 11122
Q ss_pred ccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh
Q psy13349 355 VTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLR 433 (604)
Q Consensus 355 ~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r 433 (604)
+..+.|+|+||+|+|+++ +++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|.|||+|+++++.+++|
T Consensus 1280 p~~g~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR 1359 (1522)
T TIGR00957 1280 PPRGRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGLHDLR 1359 (1522)
T ss_pred CCCCcEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCHHHHH
Confidence 345789999999999764 5799999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 434 EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
++|++|||||+||+|||||||.... +++|+|+++|++.++++++|.++|+ ||||.+||+|.+||||||||+|||
T Consensus 1360 ~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~-----GLdt~v~e~G~~LSgGQrQrl~LA 1433 (1522)
T TIGR00957 1360 FKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPD-----KLDHECAEGGENLSVGQRQLVCLA 1433 (1522)
T ss_pred hcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCcc-----CCCceecCCCCcCCHHHHHHHHHH
Confidence 9999999999999999999998443 6899999999999999999999999 999999999999999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHH
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLY 593 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y 593 (604)
|||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||||+|||+|+|+|.|+|+||++++|.|
T Consensus 1434 RALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE~G~~~eLl~~~~~f 1513 (1522)
T TIGR00957 1434 RALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIF 1513 (1522)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCHH
Confidence 99999999999999999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHHHHH
Q psy13349 594 SRLWRH 599 (604)
Q Consensus 594 ~~l~~~ 599 (604)
++|+++
T Consensus 1514 ~~l~~~ 1519 (1522)
T TIGR00957 1514 YSMAKD 1519 (1522)
T ss_pred HHHHHH
Confidence 999986
No 30
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=100.00 E-value=1.9e-82 Score=767.68 Aligned_cols=564 Identities=23% Similarity=0.280 Sum_probs=478.6
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTL 102 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 102 (604)
+...+....+++++.++.+++++++++++.++.|++++.++|.+..... .. .+.+.++++.++ .++.++..+
T Consensus 47 ~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~~~--~~-----~~~~~~~~~~i~~~~~~~~~~~ 119 (1466)
T PTZ00265 47 FFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGEN--VN-----DIIFSLVLIGIFQFILSFISSF 119 (1466)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch--HH-----HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433356788999999999999999999999999999997642211 10 111112222222 556666665
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 103 FKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 103 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
+. ..+++++..++|.++|+|++++|..||++.++|++++|+++|++.+++.+...+..++..++++++.++++++++|.
T Consensus 120 ~~-~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~~sw~ 198 (1466)
T PTZ00265 120 CM-DVVTTKILKTLKLEFLKSVFYQDGQFHDNNPGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNAR 198 (1466)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 43 46688999999999999999999999999999999999999999999999888888888888889999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
+++++++.+|+++++..++.+++++..++..+..++..+.+.|.++|+++||+|+.|+.+.++|.+..+++.+...+...
T Consensus 199 Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~k~~~ 278 (1466)
T PTZ00265 199 LTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANF 278 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888888888889999999999999999999999999999999988888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKG--------ILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDG 334 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g--------~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (604)
.......+..++..+..++++|+|++++..| .+++|.+++++.+.......+..+...+..+..+.....+.
T Consensus 279 ~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a~~ri 358 (1466)
T PTZ00265 279 MESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSL 358 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777777777777778888899999999875 57889888876655433333334444555666667777777
Q ss_pred HHhhccccccccCcccccccccCceEEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 335 MNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 335 ~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
.+.++++++..+.......+ ..+.|+++||+|+|++. .++|+|+||+|++||++|||||||||||||+++|+|+|+|
T Consensus 359 ~~ii~~~~~~~~~~~~~~~~-~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 437 (1466)
T PTZ00265 359 YEIINRKPLVENNDDGKKLK-DIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437 (1466)
T ss_pred HHHHcCCCCCCCCCCCccCC-CCCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccC
Confidence 77777655432211111111 12479999999999853 4699999999999999999999999999999999999999
Q ss_pred CccEEEE-CCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCC--------------------------------
Q psy13349 413 KYGEILI-DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRP-------------------------------- 459 (604)
Q Consensus 413 ~~G~I~i-~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~-------------------------------- 459 (604)
++|+|.+ ||.++++++.+++|++|+||+|+|.+|++||+|||.+|.+
T Consensus 438 ~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 517 (1466)
T PTZ00265 438 TEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAK 517 (1466)
T ss_pred CCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhcccccccccccccccccccccccc
Confidence 9999999 5799999999999999999999999999999999999742
Q ss_pred -------------------------CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 460 -------------------------DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 460 -------------------------~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
+++++++.++++.+++++|+.++|+ ||||.+|++|.+|||||||||+|||
T Consensus 518 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~-----g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 518 CAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPD-----KYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred ccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCcc-----ccCceeCCCCCcCCHHHHHHHHHHH
Confidence 3567899999999999999999999 9999999999999999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCC-----------------
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNG----------------- 575 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G----------------- 575 (604)
||+++|+|||||||||+||+++++.|++.|++.. +++|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999875 489999999999999999999999986
Q ss_pred ------------------------------EEeEecChhHHhh-cCcHHHHHHHHhh
Q psy13349 576 ------------------------------CVAEEGSHLDLLK-KNGLYSRLWRHQN 601 (604)
Q Consensus 576 ------------------------------~iv~~g~~~~l~~-~~~~y~~l~~~q~ 601 (604)
+|+|+|+|+||++ .+|.|+.|.+.|.
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~ 729 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQK 729 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhc
Confidence 5999999999998 6999999998774
No 31
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=2.4e-82 Score=773.32 Aligned_cols=562 Identities=22% Similarity=0.297 Sum_probs=412.6
Q ss_pred HHHHHHHhhhhH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 25 ISFILKCIYGVR--KYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTL 102 (604)
Q Consensus 25 ~~~l~~~~~~~~--~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 102 (604)
++.++.|++... +.+...+++.+++.++....++.+++..|......... .. ++..++++.++..++.+++.+
T Consensus 901 ~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~~~----~~-~~~i~~~l~~~~~i~~~~~~~ 975 (1622)
T PLN03130 901 WKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTHGP----LF-YNLIYALLSFGQVLVTLLNSY 975 (1622)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCCch----hH-HHHHHHHHHHHHHHHHHHHHH
Confidence 334445554422 23333344455666666777777777776432211111 01 111111111111444555554
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 103 FKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 103 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
+. ...+.+...++|.+++++++++|+.||+++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 976 ~~-~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~ 1054 (1622)
T PLN03130 976 WL-IMSSLYAAKRLHDAMLGSILRAPMSFFHTNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTI 1054 (1622)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHcCCHHHhccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 43 34567889999999999999999999999999999999999999999998888877777777777777777777775
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
..++++...++++++..++.+..++..+...+..+...+.+.|+++|+++||+|+.++++.+.+.+..+...+.......
T Consensus 1055 ~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~ 1134 (1622)
T PLN03130 1055 SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMS 1134 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44333333233333444555666666666777888999999999999999999999876555544433333222222222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc-cc-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGI-LG-----IGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMN 336 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~-lt-----~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 336 (604)
...+......++.. +++++.+.+.+..+. .+ .+.+..++.+...+..++.++......+-.....+++..+
T Consensus 1135 ~~~wl~~~l~~~~~---~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e 1211 (1622)
T PLN03130 1135 SNRWLAIRLETLGG---LMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGT 1211 (1622)
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233333333222 222333334344331 11 2233333334444444444444444444444555566655
Q ss_pred hhccccccccC-cc--cccccccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 337 MLSKKYKIVDN-YN--AKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 337 ~l~~~~~~~~~-~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
.++.+++.... ++ +.+.++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|
T Consensus 1212 ~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p 1291 (1622)
T PLN03130 1212 YIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVEL 1291 (1622)
T ss_pred HhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCC
Confidence 55544332111 11 11122345789999999999754 5799999999999999999999999999999999999999
Q ss_pred CccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc
Q psy13349 413 KYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYD 492 (604)
Q Consensus 413 ~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~ 492 (604)
++|+|.|||+|+++++.+++|++|++|||||.||+|||||||.+++ +++|+++++|++.++++++|.++|+ |||
T Consensus 1292 ~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~lp~-----GLd 1365 (1622)
T PLN03130 1292 ERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRRNSL-----GLD 1365 (1622)
T ss_pred CCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHhCcc-----ccC
Confidence 9999999999999999999999999999999999999999999987 5799999999999999999999999 999
Q ss_pred cccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEE
Q psy13349 493 AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572 (604)
Q Consensus 493 t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl 572 (604)
|.+||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++.+||||+||
T Consensus 1366 t~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVL 1445 (1622)
T PLN03130 1366 AEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVL 1445 (1622)
T ss_pred ccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999988899999999999999999999999
Q ss_pred eCCEEeEecChhHHhhc-CcHHHHHHHHhh
Q psy13349 573 DNGCVAEEGSHLDLLKK-NGLYSRLWRHQN 601 (604)
Q Consensus 573 ~~G~iv~~g~~~~l~~~-~~~y~~l~~~q~ 601 (604)
++|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1446 d~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1446 DAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred ECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 99999999999999987 699999997653
No 32
>COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-85 Score=662.35 Aligned_cols=485 Identities=34% Similarity=0.484 Sum_probs=434.9
Q ss_pred HhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Q psy13349 109 SGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIY-IVTILTIIGTFNVYMLFPF 187 (604)
Q Consensus 109 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~-~i~~~~~l~~~~~~l~lv~ 187 (604)
++.....+-.+.|.|+.++++.|+.++.+|.+...+......++.++...+..+...++- ..++.++...++|+.+++.
T Consensus 10 ~q~a~r~la~~~F~h~~~Lsl~fHl~r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~~~~f~~~t 89 (497)
T COG5265 10 GQIAVRVLAYVTFFHLHSLSLRFHLERRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVYGWWFALTT 89 (497)
T ss_pred HHHHHHHHHHHHHHHHHhcchhhhhhcccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhcccHHHHHH
Confidence 444566777889999999999999999999988777766666655554433333222222 2233445568999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 188 VIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSF 267 (604)
Q Consensus 188 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (604)
++.+.+++++............++..++.++.++.-.|++-+.+++|.||.|+.+..++....+.|.+...+......+.
T Consensus 90 ~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k~~~Sl~~L 169 (497)
T COG5265 90 LVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVL 169 (497)
T ss_pred HHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHHHHHHHHHH
Confidence 99999999888777777777788888999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccC
Q psy13349 268 EIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDN 347 (604)
Q Consensus 268 ~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 347 (604)
......+.......+...++.-+..|.+|+|+++....++.++..|...+.....++.++...+++.++.++.+.+..+.
T Consensus 170 n~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~~~~~v~d~ 249 (497)
T COG5265 170 NFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLDVEAEVSDA 249 (497)
T ss_pred HHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhccchhhccC
Confidence 88877777777777788888889999999999999999999999998888888888888888898888888777766665
Q ss_pred ccccccc-ccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC
Q psy13349 348 YNAKRLV-VTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN 426 (604)
Q Consensus 348 ~~~~~~~-~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~ 426 (604)
++.++.+ ...+.+.|+||+|.|.+.+|+|+++||++++|+++|+|||||+||||++++|.|||++++|.|.+||+|+++
T Consensus 250 pda~~L~~~~~g~v~F~~V~F~y~~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~ 329 (497)
T COG5265 250 PDAPPLWPVRLGAVAFINVSFAYDPRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRD 329 (497)
T ss_pred CCCccccccccceEEEEEEEeeccccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHH
Confidence 5555544 345789999999999888899999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 427 VSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 427 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
...+++|+.||.||||..||++|+..|+.+|+|+++++|+..|++.+++++||.++|+ ||||.|||+|-.|||||
T Consensus 330 vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~-----gy~t~VgerglklSgge 404 (497)
T COG5265 330 VTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE-----GYDTGVGERGLKLSGGE 404 (497)
T ss_pred hHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCch-----hhhcccchheeeccCch
Confidence 9999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHH
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 586 (604)
|||+||||+++++|+|++|||+||+||.+||+.|+.++++..+++|.++|+|||+++-+||+|+||++|+|+|.|+|+||
T Consensus 405 kqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg~h~~l 484 (497)
T COG5265 405 KQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERGTHEEL 484 (497)
T ss_pred HHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCcHHHHHHH
Q psy13349 587 LKKNGLYSRLWR 598 (604)
Q Consensus 587 ~~~~~~y~~l~~ 598 (604)
++.+|.|++||.
T Consensus 485 l~~~g~ya~mw~ 496 (497)
T COG5265 485 LAAGGLYAEMWR 496 (497)
T ss_pred HHcCChHHHHhc
Confidence 999999999996
No 33
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.7e-81 Score=763.10 Aligned_cols=487 Identities=22% Similarity=0.317 Sum_probs=413.7
Q ss_pred HhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 109 SGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFV 188 (604)
Q Consensus 109 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l 188 (604)
..+...++|.++|+++++.|+.||++.++|++++|+++|++.+++.+...+..++..++.+++.++++++.+|.++++++
T Consensus 1026 ~~~~~~~l~~~l~~~ll~~p~~ffd~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~~~p~~~~~~i 1105 (1560)
T PTZ00243 1026 MRRGSRNMHRDLLRSVSRGTMSFFDTTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSASQPFVLVALV 1105 (1560)
T ss_pred HHHHHHHHHHHHHHHHHcCChhhccCCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556789999999999999999999999999999999999999999887777777777778778888888886655544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 189 IWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFE 268 (604)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (604)
....++..+..++.+..++..+......+.+.+.+.|+++|+++||+|+.++.+.+++.+..++..+..........+..
T Consensus 1106 ~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~~~~~~~~w~~ 1185 (1560)
T PTZ00243 1106 PCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSYLENVANRWLG 1185 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555666777777888888888899999999999999999999999999999998888888887777777777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-
Q psy13349 269 IINHLLAMLLILGTTGCALFLW--TKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIV- 345 (604)
Q Consensus 269 ~~~~~~~~~~~~~i~~~g~~lv--~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 345 (604)
....++..+..+++.+++++.. ..+.+++|.+..++.++..+..++.++...+..+-.....+++..+.++..++..
T Consensus 1186 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~~~~~~~~e~~ 1265 (1560)
T PTZ00243 1186 VRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLYYTDEVPHEDM 1265 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Confidence 7777666655544444444433 3455789988888888888888877777766666666666666666654322100
Q ss_pred ---c-----------------------Ccccc---cccccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCC
Q psy13349 346 ---D-----------------------NYNAK---RLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRS 395 (604)
Q Consensus 346 ---~-----------------------~~~~~---~~~~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~s 395 (604)
+ +.... +.++..+.|+|+||+|+|+++ +++|+||||+|++||++||||+|
T Consensus 1266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrT 1345 (1560)
T PTZ00243 1266 PELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRT 1345 (1560)
T ss_pred ccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCC
Confidence 0 00000 011124679999999999764 45999999999999999999999
Q ss_pred CCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchH
Q psy13349 396 GAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475 (604)
Q Consensus 396 GsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~ 475 (604)
|||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|++|||||+||+|||||||..+. +++|+|+++|++.+++
T Consensus 1346 GSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~-~~sdeeI~~Al~~a~l 1424 (1560)
T PTZ00243 1346 GSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFL-EASSAEVWAALELVGL 1424 (1560)
T ss_pred CCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCccc-CCCHHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999999999999999999998754 6899999999999999
Q ss_pred HHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccC-CCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEE
Q psy13349 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN-APILLLDEATSALDSEAEIAIQKSLYNLMKGKTVI 554 (604)
Q Consensus 476 ~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~-p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i 554 (604)
++++.++|+ ||||.+||+|.+|||||||||||||||+++ |+|||||||||+||+++++.|++.|++..+++|+|
T Consensus 1425 ~~~I~~lp~-----Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI 1499 (1560)
T PTZ00243 1425 RERVASESE-----GIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVI 1499 (1560)
T ss_pred hHHHhhCcc-----cccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEE
Confidence 999999999 999999999999999999999999999996 89999999999999999999999999988899999
Q ss_pred EEccChhHHhhcCeEEEEeCCEEeEecChhHHhhc-CcHHHHHHHHhh
Q psy13349 555 AIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSRLWRHQN 601 (604)
Q Consensus 555 ~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~y~~l~~~q~ 601 (604)
+||||++++.+||+|+||++|+|+|.|+|+||+++ +|.|++|++.+.
T Consensus 1500 ~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1500 TIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred EEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999975 899999998654
No 34
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.8e-81 Score=759.85 Aligned_cols=498 Identities=22% Similarity=0.309 Sum_probs=387.5
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 94 TVFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTIL 173 (604)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~ 173 (604)
.++.+++.++. ...+.+...++|.++++++++.|+.||+++++|++++|+++|++.+++.+...+..++..++.+++.+
T Consensus 964 ~~~~~~~~~~~-~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~ 1042 (1495)
T PLN03232 964 VAVTFTNSFWL-ISSSLHAAKRLHDAMLNSILRAPMLFFHTNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTF 1042 (1495)
T ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCeeeeCcCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555443 34567889999999999999999999999999999999999999999998887777777666666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHH
Q psy13349 174 TIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDF 253 (604)
Q Consensus 174 ~~l~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~ 253 (604)
++++.+++...++++...+++++...++.+..++..+......+.+.+.+.|+++|+++||+|+.++++.++..+..+..
T Consensus 1043 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~ 1122 (1495)
T PLN03232 1043 ALIGTVSTISLWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNN 1122 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHH
Confidence 66666665443333322222222333344555566677788889999999999999999999999877655554443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hCcc----c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 254 LKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWT-KGIL----G-IGAVAAATAMSLRLNGISHWVMWEIAALFES 327 (604)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~-~g~l----t-~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 327 (604)
.+..........+.......+ ..+++++.+.+.+. .|.+ + .+.+..+..++..+..++.++......+...
T Consensus 1123 ~~~~~~~~~~~~wl~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~ 1199 (1495)
T PLN03232 1123 IRFTLANTSSNRWLTIRLETL---GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENS 1199 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 332222222222222222222 22222333333343 2332 1 2223334555555666666666666666666
Q ss_pred HHHHHHHHHhhccccccccC-cc--cccccccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHH
Q psy13349 328 IGTIQDGMNMLSKKYKIVDN-YN--AKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTIN 403 (604)
Q Consensus 328 ~~~~~~~~~~l~~~~~~~~~-~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~ 403 (604)
...+++..+.++.+++..+. +. +.+.++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+
T Consensus 1200 ~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~ 1279 (1495)
T PLN03232 1200 LNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSML 1279 (1495)
T ss_pred HHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHH
Confidence 66667766666554432211 11 11112345689999999999653 5799999999999999999999999999999
Q ss_pred HHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhh
Q psy13349 404 NLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLT 483 (604)
Q Consensus 404 ~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp 483 (604)
++|+|+|+|++|+|.|||+|+++++.+++|++|++|||||++|+|||||||.+++ +++|+|+++|++.+++++++.++|
T Consensus 1280 ~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~al~~a~l~~~I~~lp 1358 (1495)
T PLN03232 1280 NALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWEALERAHIKDVIDRNP 1358 (1495)
T ss_pred HHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHHHHHHcCCHHHHHhCc
Confidence 9999999999999999999999999999999999999999999999999999986 689999999999999999999999
Q ss_pred hhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHH
Q psy13349 484 DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTI 563 (604)
Q Consensus 484 ~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~ 563 (604)
+ ||||.+||+|.+|||||||||||||||+++|+|||||||||+||++||+.|++.|++..+++|+|+||||++++
T Consensus 1359 ~-----GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti 1433 (1495)
T PLN03232 1359 F-----GLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTI 1433 (1495)
T ss_pred C-----CCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHH
Confidence 9 99999999999999999999999999999999999999999999999999999999988899999999999999
Q ss_pred hhcCeEEEEeCCEEeEecChhHHhhcC-cHHHHHHHHhh
Q psy13349 564 SAMDRLIVLDNGCVAEEGSHLDLLKKN-GLYSRLWRHQN 601 (604)
Q Consensus 564 ~~~d~i~vl~~G~iv~~g~~~~l~~~~-~~y~~l~~~q~ 601 (604)
.+||||+||++|+|+|.|+|+||++++ +.|++|++.+.
T Consensus 1434 ~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1434 IDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred HhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 999999999999999999999999886 59999998764
No 35
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=100.00 E-value=8.1e-78 Score=673.20 Aligned_cols=531 Identities=18% Similarity=0.167 Sum_probs=425.7
Q ss_pred HHHHHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 24 LISFILKCIY-GVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTL 102 (604)
Q Consensus 24 ~~~~l~~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 102 (604)
..+.++.+.+ ++|+.++++++++++.+++.++.|++++.++|........ .+..++.+.++..++.++..+
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~ 75 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQG--------SLFSFGGLCLLALLFRIGADI 75 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccch--------HHHHHHHHHHHHHHHHHHHHH
Confidence 3456667888 9999999999999999999999999999998743111110 011111112222455666666
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 103 FKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 103 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
+.+ ....++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++.. +..++..++.+++.++++++++|.
T Consensus 76 ~~~-~~~~~~~~~lR~~l~~~l~~~~~~~~~~~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 153 (555)
T TIGR01194 76 FPA-YAGMHIIANLRIALCEKILGAPIEEIDRRGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVP 153 (555)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcCCHHHHHhcCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 654 456789999999999999999999999999999999999999999998865 555566667777788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAG--REANYARFAMIDFLKKIYQQ 260 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~--~~~~~~~~~~~~~~~~~~~~ 260 (604)
+++++++.+|+.+++..++.++.++...+.++..+++++.+.|.++|++++|+|+.++ .+.+++.+..+++.+...+.
T Consensus 154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T TIGR01194 154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999988888888888888888888888888999999999999999999999999854 45667777777776666555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy13349 261 MRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSK 340 (604)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 340 (604)
.+.......+..++..+...+.++++++ .|.+|+|+++++..+...+..|+..+...+..+.......++..+.++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~ 310 (555)
T TIGR01194 234 ILIFIAAENFGQLLFFLLIGCALFAAAM---FASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGER 310 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4443333333333322222222333333 3789999999999999988888777777666666666666666665532
Q ss_pred cc---ccccCcc-cc----cccccCceEEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 341 KY---KIVDNYN-AK----RLVVTNGKIFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 341 ~~---~~~~~~~-~~----~~~~~~~~i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
.. +..+.+. .. +.....+.|+++||+|+|+++ +++|+|+||++++||++|||||||||||||+++|+|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 311 FNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred hccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 11 1100000 00 001123579999999999752 369999999999999999999999999999999999
Q ss_pred CCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhc
Q psy13349 409 FYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGR 488 (604)
Q Consensus 409 ~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~ 488 (604)
+|+|++|+|.+||.++++++.+++|+++++|+||+++|++|+++|+ .|+++++++.++++.+++++++.++|+
T Consensus 391 ~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~---- 463 (555)
T TIGR01194 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDG---- 463 (555)
T ss_pred CCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccc----
Confidence 9999999999999999999999999999999999999999999995 467889999999999999999999999
Q ss_pred CCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHH-HH-hCCcEEEEEccChhHHhhc
Q psy13349 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY-NL-MKGKTVIAIAHRLSTISAM 566 (604)
Q Consensus 489 ~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~-~~-~~~~t~i~itH~l~~~~~~ 566 (604)
||||. .+|||||||||+||||++++|+++|||||||+||+++++.+.+.+. .. .+++|+|+||||+++++.|
T Consensus 464 -g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~ 537 (555)
T TIGR01194 464 -GFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELA 537 (555)
T ss_pred -ccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhC
Confidence 99994 7899999999999999999999999999999999999999998764 34 3689999999999999999
Q ss_pred CeEEEEeCCEEeEe
Q psy13349 567 DRLIVLDNGCVAEE 580 (604)
Q Consensus 567 d~i~vl~~G~iv~~ 580 (604)
|+|++|++|+++|.
T Consensus 538 d~i~~l~~G~i~~~ 551 (555)
T TIGR01194 538 DQIIKLAAGCIVKD 551 (555)
T ss_pred CEEEEEECCEEEEe
Confidence 99999999999875
No 36
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=3.8e-77 Score=726.36 Aligned_cols=495 Identities=19% Similarity=0.293 Sum_probs=407.1
Q ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 96 FVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTI 175 (604)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~ 175 (604)
+.+++.++. .....+...++|.++++++++.|+.||++.++|++++|+++|++.+++.+...+..++..++.+++.+++
T Consensus 941 ~~~~~~~~~-~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~~ 1019 (1490)
T TIGR01271 941 LGFFRGLPL-VHTLLTVSKRLHEQMLHSVLQAPMAVLNTMKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFV 1019 (1490)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHhCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444332 2345678899999999999999999999999999999999999999999988888888888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHH
Q psy13349 176 IGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLK 255 (604)
Q Consensus 176 l~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~ 255 (604)
+++++|.++++++..+++++++..++.+..++..+......+.+.+.+.|+++|+.+||+|+.++.+.+++.+..+...+
T Consensus 1020 i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~~ 1099 (1490)
T TIGR01271 1020 VSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHTA 1099 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHHH
Confidence 88999988776655555555566677777777777788888999999999999999999999999999999887776655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 256 KIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGM 335 (604)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (604)
..........+......++..+..+++.++ .+....++.|.+..++.++..+..++.+++....++-.....+++..
T Consensus 1100 ~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l---~~~~~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~eRi~ 1176 (1490)
T TIGR01271 1100 NWFLYLSTLRWFQMRIDIIFVFFFIAVTFI---AIGTNQDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVF 1176 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555544445555544444433322221111 11122345666666666666666666666665555555566666666
Q ss_pred HhhccccccccCcc-----------------cccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCC
Q psy13349 336 NMLSKKYKIVDNYN-----------------AKRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGA 397 (604)
Q Consensus 336 ~~l~~~~~~~~~~~-----------------~~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGs 397 (604)
+..+.+++..+... .++.++..+.|+|+||+|+|++ .+++|+|+||+|++||++||||+|||
T Consensus 1177 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGs 1256 (1490)
T TIGR01271 1177 KFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGS 1256 (1490)
T ss_pred HHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCC
Confidence 66544333211100 0011234578999999999975 46799999999999999999999999
Q ss_pred cHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHH
Q psy13349 398 GKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI 477 (604)
Q Consensus 398 GKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~ 477 (604)
|||||+++|+|+++ ++|+|.|||+|+++++.+++|++|+||||||+||+|||||||..+. +.+|+++++|++.+++++
T Consensus 1257 GKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei~~aL~~~~L~~ 1334 (1490)
T TIGR01271 1257 GKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEIWKVAEEVGLKS 1334 (1490)
T ss_pred CHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHHHHHHHHCCCHH
Confidence 99999999999997 7999999999999999999999999999999999999999997654 579999999999999999
Q ss_pred HHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEc
Q psy13349 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIA 557 (604)
Q Consensus 478 ~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~it 557 (604)
++.++|+ |+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||
T Consensus 1335 ~i~~lp~-----GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~Ia 1409 (1490)
T TIGR01271 1335 VIEQFPD-----KLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSE 1409 (1490)
T ss_pred HHHhCcc-----ccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEe
Confidence 9999999 99999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred cChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHHHhh
Q psy13349 558 HRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 558 H~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~~q~ 601 (604)
||++++..||||+||++|+|+|.|+|++|+++++.|++|++.+.
T Consensus 1410 HRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1410 HRVEALLECQQFLVIEGSSVKQYDSIQKLLNETSLFKQAMSAAD 1453 (1490)
T ss_pred cCHHHHHhCCEEEEEECCEEEEeCCHHHHHcCCcHHHHHHHHhC
Confidence 99999999999999999999999999999998999999998654
No 37
>KOG0054|consensus
Probab=100.00 E-value=1.3e-77 Score=697.47 Aligned_cols=497 Identities=26% Similarity=0.407 Sum_probs=438.3
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 95 VFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILT 174 (604)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~ 174 (604)
++..++++. ....+.+....+..++++++++.|+.||+..++|+|+||+++|++.+++.+...+..++..++.+++.++
T Consensus 873 ~~~~~rs~~-~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtTP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~ 951 (1381)
T KOG0054|consen 873 LLTLLRSFL-FAKGGLKASRKLHDKLLNSILRAPMSFFDTTPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILV 951 (1381)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhCcchhcCCCCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 344444443 2344567889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHH
Q psy13349 175 IIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFL 254 (604)
Q Consensus 175 ~l~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~ 254 (604)
++.+..|+++++++...++++++..+|.+..++..+-...+++...+++.|+++|+.|||+|+.++++.+++.+..+...
T Consensus 952 vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~ 1031 (1381)
T KOG0054|consen 952 VISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENS 1031 (1381)
T ss_pred HhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhH
Confidence 99999999999999888999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 255 KKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDG 334 (604)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (604)
+..........|...-.+++..+....+..+.+..- .+..+.|.+...+.|+..+.+..+|.+....++=.....+++.
T Consensus 1032 ~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~~-~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv 1110 (1381)
T KOG0054|consen 1032 RAFFLSISANRWLAVRLELLGNLVVLIAALFAVLLP-SGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERV 1110 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-CCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHH
Confidence 888777777778888778777665544433333222 2227789999999999999999999988887776667777777
Q ss_pred HHhhcccccc-ccC-cc-cccccccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 335 MNMLSKKYKI-VDN-YN-AKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 335 ~~~l~~~~~~-~~~-~~-~~~~~~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.+..+.+++. .+. +. +++.+|..|+|+|+|++.+|.++ ++||+||||+|+|||+|||||++|||||||+++|.|+.
T Consensus 1111 ~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~ 1190 (1381)
T KOG0054|consen 1111 LEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLV 1190 (1381)
T ss_pred HHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhc
Confidence 7776644431 111 11 34457778999999999999764 67999999999999999999999999999999999999
Q ss_pred CCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCC
Q psy13349 411 DIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490 (604)
Q Consensus 411 ~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g 490 (604)
+|.+|+|.|||.|+.++...++|++++++||||.||+||+|.||--.+ +.+|+++|+|++.+++.+++.++|+ |
T Consensus 1191 e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf~-e~sD~~IW~ALe~~~Lk~~v~~~p~-----~ 1264 (1381)
T KOG0054|consen 1191 EPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPFD-EYSDDEIWEALERCQLKDVVSSLPG-----G 1264 (1381)
T ss_pred CccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCccc-ccCHHHHHHHHHHhChHHHHhhCCc-----C
Confidence 999999999999999999999999999999999999999999995433 5799999999999999999999999 9
Q ss_pred CccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEE
Q psy13349 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLI 570 (604)
Q Consensus 491 ~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~ 570 (604)
+|+.|.|+|.|+|-||||.+||||||+|+++||+|||||+++|++|...|++.|++..++|||+.|+||++++.+||||+
T Consensus 1265 Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVl 1344 (1381)
T KOG0054|consen 1265 LDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVL 1344 (1381)
T ss_pred CCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCEEeEecChhHHhhc-CcHHHHHHHH
Q psy13349 571 VLDNGCVAEEGSHLDLLKK-NGLYSRLWRH 599 (604)
Q Consensus 571 vl~~G~iv~~g~~~~l~~~-~~~y~~l~~~ 599 (604)
|||+|+|+|.|+|++|+++ ++.|+++..+
T Consensus 1345 Vld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1345 VLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred EeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 9999999999999999976 6777666544
No 38
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=100.00 E-value=3.1e-75 Score=604.63 Aligned_cols=543 Identities=21% Similarity=0.271 Sum_probs=455.5
Q ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHH
Q psy13349 30 KCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKHQVL 108 (604)
Q Consensus 30 ~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~ 108 (604)
......++.++...+++.+..++.+..|+++-.+.|.+..+.+...+ ..+..+.++..++ .++.++++.+. ..+
T Consensus 16 a~l~~~r~a~~~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~~TL----v~Ltvlal~ly~~~glLd~iR~~~l-~Ri 90 (580)
T COG4618 16 AVLAANRRAFIGVGLFSAVINLLALTGPLYMLQVYDRVLPSRSVPTL----VMLTVLALGLYAFQGLLDAIRSRVL-VRI 90 (580)
T ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCcchH----HHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Confidence 44566777788888999999999999999999999999876542211 0111122222222 66777777654 467
Q ss_pred HhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 109 SGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFV 188 (604)
Q Consensus 109 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l 188 (604)
+.++...+..++|....+.+..-.. .|+=.+- -+|.++++.|++..-...+...-..-.++.++|.++|+++++.+
T Consensus 91 g~~lD~~L~~~v~~a~~~~~l~~~~---~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~ 166 (580)
T COG4618 91 GERLDRQLNGPVFAASFSAPLLRRG---SGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIAL 166 (580)
T ss_pred HHHHHHHhccHHHHHHHhhHHhhcC---CCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999999877765332 2322222 25778899998764444333433444567778889999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 189 IWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFE 268 (604)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (604)
+...++..+..+-....++..++..+...+.+....-+.++.++|++.|+.....++|.+...++++.+.+..-....++
T Consensus 167 ~ga~iLv~la~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~ 246 (580)
T COG4618 167 AGAIILVVLALLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFG 246 (580)
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 88877777666666666777777888888888888999999999999999999999999999999999888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCc
Q psy13349 269 IINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNY 348 (604)
Q Consensus 269 ~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 348 (604)
.++..+-...+..++.+|+|++.+|++|.|.+++...++.+...|+...+....++..+....++..+.+...+...
T Consensus 247 ~~Sr~~Rm~lQs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~--- 323 (580)
T COG4618 247 ALSRALRMALQSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAA--- 323 (580)
T ss_pred HHHHHHHHHHHHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCcccc---
Confidence 89999999999999999999999999999999999999998888877777666666655555565555555443321
Q ss_pred ccccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC
Q psy13349 349 NAKRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV 427 (604)
Q Consensus 349 ~~~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~ 427 (604)
..-+.+.+++.+.++++++.-|+ ++|+++++||++++||-+|||||||||||||.++|.|.++|.+|.|++||-|+++.
T Consensus 324 ~~m~LP~P~g~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qW 403 (580)
T COG4618 324 ERMPLPAPQGALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQW 403 (580)
T ss_pred CCCCCCCCCceeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcC
Confidence 12233445688999999998776 56899999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHH
Q psy13349 428 SQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQR 507 (604)
Q Consensus 428 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~ 507 (604)
+++.+-++|||.|||..||+|||.|||+-..++++++.+.+|++.++.||.|.++|+ ||||.+||+|..||||||
T Consensus 404 d~e~lG~hiGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~-----GYdT~iG~~G~~LSgGQR 478 (580)
T COG4618 404 DREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQ-----GYDTRIGEGGATLSGGQR 478 (580)
T ss_pred CHHHhccccCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcC-----CccCccCCCCCCCCchHH
Confidence 999999999999999999999999999988888999999999999999999999999 999999999999999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHH
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 586 (604)
|||+|||||+.||.+++||||-|+||.+-|..+.++|.+.+ ++.|+|+||||++.+..+|+|++|++|++-..|+.+|.
T Consensus 479 QRIaLARAlYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eV 558 (580)
T COG4618 479 QRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEV 558 (580)
T ss_pred HHHHHHHHHcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHH
Confidence 99999999999999999999999999999999999998876 68999999999999999999999999999999999998
Q ss_pred hhc
Q psy13349 587 LKK 589 (604)
Q Consensus 587 ~~~ 589 (604)
+++
T Consensus 559 La~ 561 (580)
T COG4618 559 LAK 561 (580)
T ss_pred HHH
Confidence 764
No 39
>PLN03232 ABC transporter C family member; Provisional
Probab=100.00 E-value=7.2e-74 Score=698.74 Aligned_cols=544 Identities=17% Similarity=0.220 Sum_probs=416.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy13349 27 FILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKH 105 (604)
Q Consensus 27 ~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 105 (604)
.++...+.+++.++.++++.++..++..+.|++++.++|.+...... +. ...+..++++..++ .+... ......
T Consensus 291 l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~~~~--~~--~~~~~~~l~~~~~~~~~~~~-~~~~~~ 365 (1495)
T PLN03232 291 LLRALNNSLGGRFWLGGIFKIGHDLSQFVGPVILSHLLQSMQEGDPA--WV--GYVYAFLIFFGVTFGVLCES-QYFQNV 365 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--ch--HHHHHHHHHHHHHHHHHHHH-HHHHHH
Confidence 34445566788888888899999999999999999999987543211 10 00111111111111 11111 111111
Q ss_pred HHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 106 QVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLF 185 (604)
Q Consensus 106 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 185 (604)
.....++...++..+|+|+++++..++++..+|++++++++|++.+++++. .+..+....+.+++.+++ +.+.+++
T Consensus 366 ~~~~~~ir~~l~~~i~~k~l~l~~~~~~~~~~G~i~n~ls~Dv~~i~~~~~-~l~~l~~~p~~ii~~~~~---l~~~lg~ 441 (1495)
T PLN03232 366 GRVGFRLRSTLVAAIFHKSLRLTHEARKNFASGKVTNMITTDANALQQIAE-QLHGLWSAPFRIIVSMVL---LYQQLGV 441 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH---HHHHHhH
Confidence 244556777888899999999999999999999999999999999999863 333333333333322222 2233443
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 186 PFVIWIS---AYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 186 v~l~~~~---l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
..++.++ +.+.+..++.+++++..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+...
T Consensus 442 ~~l~~~~v~~l~~pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~ 521 (1495)
T PLN03232 442 ASLFGSLILFLLIPLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQL 521 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332222 2222455677888888899999999999999999999999999999999988888766665555555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKY 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (604)
.......+..... ..+.++.+|++++.+|.+|+|.++++..++..+..++..+...+..+.++...+++..+.++.++
T Consensus 522 ~~~~~~~~~~~~~--~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~ 599 (1495)
T PLN03232 522 LSAFNSFILNSIP--VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEE 599 (1495)
T ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4433333222111 12334677888888999999999999999888888776665555666666666777666665443
Q ss_pred ccccCcccccccccCceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC
Q psy13349 343 KIVDNYNAKRLVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420 (604)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~ 420 (604)
+..+. . .+.....+.|+++|++|+|++ ++++|+|+||+|++||+++||||||||||||+++|+|+++|++|.+.
T Consensus 600 ~~~~~-~-~~~~~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~-- 675 (1495)
T PLN03232 600 RILAQ-N-PPLQPGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV-- 675 (1495)
T ss_pred ccccc-c-CCcCCCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE--
Confidence 21111 1 111112246999999999975 36799999999999999999999999999999999999999998763
Q ss_pred CEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 421 GQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 421 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
.+|++|+||+|+|++|++||||||++|+| .+++++.++++.++++++++.+|+ |++|.+||+|.
T Consensus 676 ----------~~~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~-----Gd~T~IGe~G~ 739 (1495)
T PLN03232 676 ----------VIRGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPG-----RDLTEIGERGV 739 (1495)
T ss_pred ----------EecCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCC-----CCCceecCCCc
Confidence 35779999999999999999999999986 689999999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHH-HHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeE
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS-LYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~-i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~ 579 (604)
+||||||||||||||++++|+|+||||||||||+++++.+.+. +....+++|+|+||||++.++.||+|++|++|++++
T Consensus 740 ~LSGGQkQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~ 819 (1495)
T PLN03232 740 NISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKE 819 (1495)
T ss_pred ccCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEE
Confidence 9999999999999999999999999999999999999999765 565667999999999999999999999999999999
Q ss_pred ecChhHHhhcCcHHHHHHHHhh
Q psy13349 580 EGSHLDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 580 ~g~~~~l~~~~~~y~~l~~~q~ 601 (604)
+|+|+||+++++.|+++++.+.
T Consensus 820 ~Gt~~eL~~~~~~~~~l~~~~~ 841 (1495)
T PLN03232 820 EGTFAELSKSGSLFKKLMENAG 841 (1495)
T ss_pred ecCHHHHHhcchhHHHHHHhcc
Confidence 9999999999999999987653
No 40
>PLN03130 ABC transporter C family member; Provisional
Probab=100.00 E-value=1.8e-73 Score=695.43 Aligned_cols=546 Identities=18% Similarity=0.221 Sum_probs=414.3
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 27 FILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQ 106 (604)
Q Consensus 27 ~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 106 (604)
.++...+.+++.++.++++.++..++..+.|++++.++|.+...... +. .. .+..++++..++..+..........
T Consensus 291 l~~~l~~~~~~~~~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~~~~--~~-~~-~~~~~l~~~~~~~~~~~~~~~~~~~ 366 (1622)
T PLN03130 291 LLRALNNSLGGRFWLGGFFKIGNDLSQFVGPLLLNLLLESMQNGEPA--WI-GY-IYAFSIFVGVVLGVLCEAQYFQNVM 366 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--hH-HH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455667788888899999999999999999999999987543211 10 01 1111111111111111111111112
Q ss_pred HHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 107 VLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFP 186 (604)
Q Consensus 107 ~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv 186 (604)
.++.++...++..+|+|+++++..++++.++|++++++++|++.+++++.. +..+....+.+++.+++++..-...+++
T Consensus 367 ~~~~~ir~~L~~~i~~k~L~l~~~~~~~~~~G~ivnl~s~Dv~~i~~~~~~-l~~l~~~pl~ii~~~~lL~~~lg~~~l~ 445 (1622)
T PLN03130 367 RVGFRLRSTLVAAVFRKSLRLTHEGRKKFTSGKITNLMTTDAEALQQICQQ-LHTLWSAPFRIIIAMVLLYQQLGVASLI 445 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhcCChhhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445667778888999999999999999999999999999999999998743 3333334333333333333211111222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 187 FVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISS 266 (604)
Q Consensus 187 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (604)
.++.+++.+.+..++.+++++..++.++..+++.+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.......
T Consensus 446 g~~v~~l~~~l~~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~ 525 (1622)
T PLN03130 446 GSLMLVLMFPIQTFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAF 525 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22223344445566778888888888999999999999999999999999999998888877655544444443333333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy13349 267 FEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVD 346 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (604)
...+..... ..+.++.+|++.+.+|.+|+|.++++..++..+..|+..+...+..+.++....++..+.++.++...+
T Consensus 526 ~~~~~~~~~--~~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~ 603 (1622)
T PLN03130 526 NSFILNSIP--VLVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLL 603 (1622)
T ss_pred HHHHHHHHH--HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccc
Confidence 222222111 133456778888889999999999998888887777666555566666666666666666654322111
Q ss_pred CcccccccccCceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEECCEe
Q psy13349 347 NYNAKRLVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY-GEILIDGQN 423 (604)
Q Consensus 347 ~~~~~~~~~~~~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~I~i~g~~ 423 (604)
. .. ...+..+.|+++|++|+|++ ++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+
T Consensus 604 ~-~~-~~~~~~~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l---- 677 (1622)
T PLN03130 604 P-NP-PLEPGLPAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI---- 677 (1622)
T ss_pred c-CC-cccCCCCceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE----
Confidence 1 11 01111246999999999975 3579999999999999999999999999999999999999999 99975
Q ss_pred CCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 424 ISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 424 ~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
|++|+||+|+|++|++||||||++|+| .+++++.++++.++++++++.||+ |++|.+||+|.+||
T Consensus 678 ---------~~~Iayv~Q~p~LfngTIreNI~fg~~-~d~e~y~~vl~a~~L~~di~~LP~-----Gd~T~IGe~G~~LS 742 (1622)
T PLN03130 678 ---------RGTVAYVPQVSWIFNATVRDNILFGSP-FDPERYERAIDVTALQHDLDLLPG-----GDLTEIGERGVNIS 742 (1622)
T ss_pred ---------cCeEEEEcCccccCCCCHHHHHhCCCc-ccHHHHHHHHHHhCcHHHHHhCCC-----cccccccCCCCCCC
Confidence 458999999999999999999999987 588999999999999999999999 99999999999999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHH-HHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK-SLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~-~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~ 582 (604)
|||||||+||||++++|+|+||||||||||+++++.|.+ +++...+++|+|+|||+++.++.||+|++|++|+|+++|+
T Consensus 743 GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt 822 (1622)
T PLN03130 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGT 822 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCC
Confidence 999999999999999999999999999999999998865 5666667999999999999999999999999999999999
Q ss_pred hhHHhhcCcHHHHHHHHh
Q psy13349 583 HLDLLKKNGLYSRLWRHQ 600 (604)
Q Consensus 583 ~~~l~~~~~~y~~l~~~q 600 (604)
|+||+++++.|+++++.+
T Consensus 823 ~~eL~~~~~~~~~l~~~~ 840 (1622)
T PLN03130 823 YEELSNNGPLFQKLMENA 840 (1622)
T ss_pred HHHHHhcchhHHHHHHhc
Confidence 999999999999998754
No 41
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=100.00 E-value=3e-73 Score=635.93 Aligned_cols=529 Identities=19% Similarity=0.217 Sum_probs=390.8
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 27 FILKCIYGVRKYILLVIFFTTLTGTFEAL-LFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKH 105 (604)
Q Consensus 27 ~l~~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 105 (604)
+++++.+++++.++.+++++++++++.++ .|++.++++|.+... ... ......+ .++..++.++..++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~-~~~-----~~~~~~~---~~~~~~~~~~~~~~~- 72 (547)
T PRK10522 3 LLRLVWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS-LLV-----LPEFLGL---LLLLMAVTLGSQLAL- 72 (547)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc-chH-----HHHHHHH---HHHHHHHHHHHHHHH-
Confidence 46778889999999999999999999987 478889999975321 100 1011111 111123344555443
Q ss_pred HHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 106 QVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLF 185 (604)
Q Consensus 106 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 185 (604)
...+.++..++|.++|+|++++|+.+|+++++|++++|+++|++.+..++.. +..++..++.+++.++++++++|.+++
T Consensus 73 ~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~~~g~~lsrl~~dv~~i~~~~~~-l~~~~~~~~~~i~~~~~l~~~~~~l~l 151 (547)
T PRK10522 73 TTLGHHFVYRLRSEFIKRILDTHVERIEQLGSASLLASLTSDVRNITIAFVR-LPELVQGIILTLGSAAYLAWLSPKMLL 151 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhccCccchHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 3456788899999999999999999999999999999999999999987654 555666777777788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 186 PFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHA---GREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 186 v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
++++.+|+.+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.+++++..+++.+...+...
T Consensus 152 i~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (547)
T PRK10522 152 VTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADT 230 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHH
Confidence 9999999888888889999998888999999999999999999999996 4443 23456666666655555444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC---cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKG---ILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLS 339 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g---~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 339 (604)
.......+..++..+ .++.+++..+ ..+.+...++..+...+..++..+...+..+.......++..+.++
T Consensus 231 ~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~ 304 (547)
T PRK10522 231 FHLSAVNWSNIMMLG------AIGLVFYMANSLGWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLAL 304 (547)
T ss_pred HHHHHHHHHHHHHHH------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 333222222222111 1222222222 1233333333333333445555554444444444444444444432
Q ss_pred cccccccCcccccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q psy13349 340 KKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419 (604)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i 419 (604)
.+.+. +...... .+..+.++++||+|+|++++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+
T Consensus 305 ~~~~~-~~~~~~~-~~~~~~i~~~~v~f~y~~~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 382 (547)
T PRK10522 305 APYKA-EFPRPQA-FPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILL 382 (547)
T ss_pred ccccc-ccccccc-cCcCceEEEEEEEEEeCCCCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE
Confidence 22111 1011111 111247999999999986567999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 420 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
||+++++++.+++|++++|||||+++|++|++|| + ++.+++++.++++..++++++. .|+ |. .+|
T Consensus 383 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~-----~~-----~~G 447 (547)
T PRK10522 383 DGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LED-----GR-----ISN 447 (547)
T ss_pred CCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccc-----cC-----CCC
Confidence 9999999999999999999999999999999999 2 4567777777777666554433 122 21 147
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCV 577 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i 577 (604)
.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|++
T Consensus 448 ~~LSgGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i 527 (547)
T PRK10522 448 LKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQL 527 (547)
T ss_pred CCCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999987553 48999999999999999999999999999
Q ss_pred eEe-cChhHHhhcC
Q psy13349 578 AEE-GSHLDLLKKN 590 (604)
Q Consensus 578 v~~-g~~~~l~~~~ 590 (604)
+|. |++.+-..++
T Consensus 528 ~e~~~~~~~~~~~~ 541 (547)
T PRK10522 528 SELTGEERDAASRD 541 (547)
T ss_pred EEecCCchhhhhhh
Confidence 987 6665544443
No 42
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=100.00 E-value=9.4e-69 Score=608.70 Aligned_cols=526 Identities=15% Similarity=0.152 Sum_probs=417.9
Q ss_pred HHHHHHHhhhhHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHH
Q psy13349 25 ISFILKCIYGVRK-----YILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVG 98 (604)
Q Consensus 25 ~~~l~~~~~~~~~-----~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~ 98 (604)
.+.++++++|+++ .++..+++.++.+++.+..|++.+.++|.+...+...+.. ......++.+++.++ .+..+
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~-~l~~~~l~~~~~~~~~~~~~~ 157 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAW-ILFKWFLIAPPASFINSAIKY 157 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 3445677788887 5778888899999999999999999999887543222211 011111111111122 34444
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 99 LQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGT 178 (604)
Q Consensus 99 ~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~ 178 (604)
+..++. .....++...++.+.+++....+..+|++ ++|++.+|+++|++.+.+.+...+..++..++.++++++.++.
T Consensus 158 ~~~~~~-~~~r~~l~~~l~~~~~~~~~~~~~~~~d~-~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 158 LLKELK-LRFRVRLTRYLYSKYLSGFTFYKVSNLDS-RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHH-HHHHHHHHHHHHHHHhCCCceEEeccCCC-CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 24456777788888888887888888886 7899999999999999999988888888888888877777775
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHH
Q psy13349 179 -FNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKI 257 (604)
Q Consensus 179 -~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~ 257 (604)
.+|.+++++++..|+..++.+++.+++.+...+.++..+++.+.+.|.++|+++||+|+.|+.+.+++.+.+++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-h----CcccHHHHHH-HHHH---HHHHHHHHHHHHHHHHHHHH
Q psy13349 258 YQQMRLISSFEIINHLLAML--LILGTTGCALFLWT-K----GILGIGAVAA-ATAM---SLRLNGISHWVMWEIAALFE 326 (604)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~~--~~~~i~~~g~~lv~-~----g~lt~G~~~~-~~~~---~~~l~~~~~~~~~~~~~~~~ 326 (604)
.+..+.......+..++... ..++++++|...+. . |.+|.|.+++ ++.+ +..+..++..+......+.+
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888887777542 33333344443332 2 7899998776 5544 34445666666665666666
Q ss_pred HHHHHHHHHHhhcccccccc---------C-ccc-------------ccccccCceEEEEEEEEEeCCCCceeeecceEE
Q psy13349 327 SIGTIQDGMNMLSKKYKIVD---------N-YNA-------------KRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTI 383 (604)
Q Consensus 327 ~~~~~~~~~~~l~~~~~~~~---------~-~~~-------------~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i 383 (604)
.....++..+.++..++..+ . .+. .......+.|+++||+|.|++++++|+|+||++
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~~~il~~isl~i 475 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEV 475 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCCCeeeecceEEE
Confidence 66666666665543322110 0 000 000112356999999999976567999999999
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCC-----
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGR----- 458 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~----- 458 (604)
++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||||+|++|++|++||+.++.
T Consensus 476 ~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~ 544 (659)
T TIGR00954 476 PSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSEDM 544 (659)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChhhh
Confidence 99999999999999999999999999999999998864 56899999999999999999999874
Q ss_pred --CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHH
Q psy13349 459 --PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536 (604)
Q Consensus 459 --~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~ 536 (604)
++.+++++.++++.+++++++.+ |. |+||..+ .+.+||||||||++||||++++|+++|||||||+||+++
T Consensus 545 ~~~~~~~~~i~~~l~~~~l~~~~~~-~~-----g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~ 617 (659)
T TIGR00954 545 KRRGLSDKDLEQILDNVQLTHILER-EG-----GWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDV 617 (659)
T ss_pred hccCCCHHHHHHHHHHcCCHHHHhh-cC-----Ccccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHH
Confidence 34678899999999999998877 77 9999876 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEe
Q psy13349 537 EIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLD 573 (604)
Q Consensus 537 ~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~ 573 (604)
++.+.+.+++. ++|+|+||||++.++.||+|++|+
T Consensus 618 ~~~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~ 652 (659)
T TIGR00954 618 EGYMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMD 652 (659)
T ss_pred HHHHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEe
Confidence 99999999764 899999999999999999999996
No 43
>TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP). This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved.
Probab=100.00 E-value=3.5e-67 Score=640.94 Aligned_cols=545 Identities=18% Similarity=0.224 Sum_probs=412.6
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy13349 27 FILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKH 105 (604)
Q Consensus 27 ~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 105 (604)
.++.+.+.+++.++.++++.++..++..++|++++.++|.+....... . ..+.++..+++..++ +++.....+ ..
T Consensus 307 l~~~l~~~~~~~~l~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~~-~--~g~~~~~~~~~~~~~~~~~~~~~~~-~~ 382 (1522)
T TIGR00957 307 LFKVLYKTFGPYFLMSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAPD-W--QGYFYTGLLFVCACLQTLILHQYFH-IC 382 (1522)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccc-c--hHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 455566777888999999999999999999999999999875432211 1 011111111111111 222111111 12
Q ss_pred HHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Q psy13349 106 QVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY-ML 184 (604)
Q Consensus 106 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~-l~ 184 (604)
...+.++...++..+|+|+++++..++++..+|++++++++|++.+.++.. .+..+....+.+++++++ ++..+. .+
T Consensus 383 ~~~~~~ir~~L~~~iy~K~L~l~~~~~~~~~~G~i~nl~s~D~~~i~~~~~-~~~~~~~~~~~i~~~~~l-l~~~~g~~~ 460 (1522)
T TIGR00957 383 FVSGMRIKTAVMGAVYRKALVITNSARKSSTVGEIVNLMSVDAQRFMDLAT-YINMIWSAPLQVILALYF-LWLNLGPSV 460 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhcCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHH
Confidence 345667888899999999999999999999999999999999999888653 333333444443333333 333333 33
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 185 FPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLI 264 (604)
Q Consensus 185 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (604)
++.++.+++++.+..++.+++++.+++.++..++..+.+.|.++|+++||+|+.|+.+.+++++..++..+...+.....
T Consensus 461 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~ 540 (1522)
T TIGR00957 461 LAGVAVMVLMVPLNAVMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLH 540 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455556666778888899999999999999999999999999999999999988888776655544443333332
Q ss_pred HHHHHHHHHHHHHHH--HHHHHHHHHHHh--hCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy13349 265 SSFEIINHLLAMLLI--LGTTGCALFLWT--KGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSK 340 (604)
Q Consensus 265 ~~~~~~~~~~~~~~~--~~i~~~g~~lv~--~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 340 (604)
. +..+...... +.++.++.|.+. ++.++.+..++.+.++..+..|+..+...+..+.++....++..+.++.
T Consensus 541 ~----~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~ 616 (1522)
T TIGR00957 541 A----VGTFTWVCTPFLVALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSH 616 (1522)
T ss_pred H----HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 2 2222222222 222334556555 3568888888887777777777766666666666666667776666654
Q ss_pred ccccccCccccccc-ccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE
Q psy13349 341 KYKIVDNYNAKRLV-VTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418 (604)
Q Consensus 341 ~~~~~~~~~~~~~~-~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~ 418 (604)
++...+........ ...+.++++|++|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.
T Consensus 617 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~ 696 (1522)
T TIGR00957 617 EELEPDSIERRTIKPGEGNSITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696 (1522)
T ss_pred cccccccccccccCCCCCCcEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEE
Confidence 32211100001111 11236999999999975 35799999999999999999999999999999999999999999999
Q ss_pred ECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccC
Q psy13349 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEH 498 (604)
Q Consensus 419 i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~ 498 (604)
++| +|+||||+|++|++||+|||.+|.+ .++++..++++.+++.+++..+|+ |++|.+||+
T Consensus 697 ~~g-------------~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~-----g~~t~ig~~ 757 (1522)
T TIGR00957 697 MKG-------------SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPS-----GDRTEIGEK 757 (1522)
T ss_pred ECC-------------EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCC-----CCCceecCC
Confidence 997 5999999999999999999999975 466777888888888999999998 999999999
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHH---HhCCcEEEEEccChhHHhhcCeEEEEeCC
Q psy13349 499 GIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN---LMKGKTVIAIAHRLSTISAMDRLIVLDNG 575 (604)
Q Consensus 499 g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~---~~~~~t~i~itH~l~~~~~~d~i~vl~~G 575 (604)
|.+||||||||++||||++++|+++|||||||+||+++++.+.+.+.+ ..+++|+|+|||+++.++.||+|++|++|
T Consensus 758 g~~LSGGQkqRiaLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G 837 (1522)
T TIGR00957 758 GVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGG 837 (1522)
T ss_pred CCCCCHHHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCC
Confidence 999999999999999999999999999999999999999999998853 34689999999999999999999999999
Q ss_pred EEeEecChhHHhhcCcHHHHHHHHh
Q psy13349 576 CVAEEGSHLDLLKKNGLYSRLWRHQ 600 (604)
Q Consensus 576 ~iv~~g~~~~l~~~~~~y~~l~~~q 600 (604)
+++++|+|+|+.++++.|++++..+
T Consensus 838 ~i~~~g~~~~l~~~~~~~~~l~~~~ 862 (1522)
T TIGR00957 838 KISEMGSYQELLQRDGAFAEFLRTY 862 (1522)
T ss_pred eEEeeCCHHHHHhcchhHHHHHHhh
Confidence 9999999999999999999988643
No 44
>KOG0054|consensus
Probab=100.00 E-value=1.1e-65 Score=597.82 Aligned_cols=547 Identities=21% Similarity=0.234 Sum_probs=404.3
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 28 ILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQV 107 (604)
Q Consensus 28 l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 107 (604)
++...+-++|.++...++..+...+..+.|.++..+++.+...+. ..+. ...+...+++..++..+..-..++....
T Consensus 192 ~~al~~~f~~~~~~~~~~~~~~~~~~~~~P~lL~~li~~~~~~~~-~~~~--g~~~a~~lf~~~~l~~l~~~~~~~~~~~ 268 (1381)
T KOG0054|consen 192 LRALLRTFGRTFLLSGIFLFLRDLAGFVGPLLLKKLILFFSEKRL-PLNN--GYLLAVLLFLASLLQSLLLHQYFFVSFR 268 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHhcCCCc-ccch--hHHHHHHHHHHHHHHHHHHhHHHHHHHh
Confidence 444455677888777777777777799999999999998765422 1111 1111111111111111111111111123
Q ss_pred HHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 108 LSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPF 187 (604)
Q Consensus 108 ~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~ 187 (604)
++.++...+-..+|+|.++++..--.+..+|++++-++.|++.+.++....-... ...+-+++++.++...=-.-+++.
T Consensus 269 ~g~r~R~al~~~IY~K~L~ls~~~~~~~t~G~ivNlms~D~~ri~~~~~~~h~~w-~~Plqi~~~l~lLy~~LG~sa~~G 347 (1381)
T KOG0054|consen 269 VGMRLRSALISAIYRKALRLSNSARGETTVGEIVNLMSVDAQRLSDAACFLHLLW-SAPLQIILALYLLYGLLGPSALAG 347 (1381)
T ss_pred hhhhHHHHHHHHHHHhhhcCchhhccCCCcchhhhhhhhhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhChHHHHH
Confidence 3445555556678999999998887788999999999999999998765443332 222333333333332222233444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 188 VIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSF 267 (604)
Q Consensus 188 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (604)
++.+.+++.+..++.+++.+.+.+.++...+..+...|.++||++||.|+.|+.+.++.++..++-.+...+.....+..
T Consensus 348 ~~~~il~~p~n~~~a~~~~~~q~~~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~ 427 (1381)
T KOG0054|consen 348 VAVMVLLIPLNSFLAKKIAKFQKRLMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALN 427 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55556666677888899999999999999999999999999999999999999988777665544444444444443333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy13349 268 EIINHLLAMLLILGTTGCALFL-WTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVD 346 (604)
Q Consensus 268 ~~~~~~~~~~~~~~i~~~g~~l-v~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (604)
..+......+..+ +.+++|. ...+.++....++...++..+..|+..+-..+..+.++...+++..+++..+....+
T Consensus 428 ~~~~~~~p~lv~~--~tF~~~v~~~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~~ 505 (1381)
T KOG0054|consen 428 SFLNFFSPVLVSV--VTFVVFVLLLGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDPD 505 (1381)
T ss_pred HHHHHHHHHHHHH--HHHHHHhhccCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCcc
Confidence 3332222222222 2333343 345677777777777777777777666545555566666666666666654422111
Q ss_pred CcccccccccCceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC
Q psy13349 347 NYNAKRLVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424 (604)
Q Consensus 347 ~~~~~~~~~~~~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~ 424 (604)
........+.+..++++|.+|++++ ..+.|+||||+|++|+.+||||+.|||||||+.+|+|..+..+|++.++|
T Consensus 506 ~~~~~~~~~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g--- 582 (1381)
T KOG0054|consen 506 SVERSPDEAGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG--- 582 (1381)
T ss_pred ccccCCCCCCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC---
Confidence 1110111223457999999999975 34599999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 425 SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 425 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
.++||||+||+|+|||||||+||.| .++++..++.+.+++++.++.||. |-.|.|||+|.+|||
T Consensus 583 ----------siaYv~Q~pWI~ngTvreNILFG~~-~d~~rY~~Vi~aC~L~~Dle~Lp~-----GD~TeIGErGinLSG 646 (1381)
T KOG0054|consen 583 ----------SVAYVPQQPWIQNGTVRENILFGSP-YDEERYDKVIKACALKKDLEILPF-----GDLTEIGERGINLSG 646 (1381)
T ss_pred ----------eEEEeccccHhhCCcHHHhhhcCcc-ccHHHHHHHHHHccCHhHHhhcCC-----CCcceecCCccCCcH
Confidence 5999999999999999999999987 678889999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHH-HHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK-SLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~-~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~ 583 (604)
||||||+||||+++|+||++||+|.||+|+++.+.|.+ +|+...++||+|+|||.++.++.||+|++|++|+|++.|+|
T Consensus 647 GQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty 726 (1381)
T KOG0054|consen 647 GQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTY 726 (1381)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCH
Confidence 99999999999999999999999999999999999965 56666789999999999999999999999999999999999
Q ss_pred hHHhhcCcHHHHHHHH
Q psy13349 584 LDLLKKNGLYSRLWRH 599 (604)
Q Consensus 584 ~~l~~~~~~y~~l~~~ 599 (604)
+||++.++.|.++..+
T Consensus 727 ~el~~~~~~~~~l~~~ 742 (1381)
T KOG0054|consen 727 EELLKSGGDFAELAHE 742 (1381)
T ss_pred HHHHhcchhHHHHhhc
Confidence 9999999999988543
No 45
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=100.00 E-value=2.3e-63 Score=605.71 Aligned_cols=541 Identities=18% Similarity=0.209 Sum_probs=404.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy13349 27 FILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKH 105 (604)
Q Consensus 27 ~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 105 (604)
+++.+.+.++|.++...++.++..++.+++|++++.+++.+......... ..+.++..+++..++ .++.....+ .+
T Consensus 70 L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~P~ll~~li~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~~~~~-~~ 146 (1490)
T TIGR01271 70 LLNALRRCFFWRFVFYGILLYFGEATKAVQPLLLGRIIASYDPFNAPERE--IAYYLALGLCLLFIVRTLLLHPAIF-GL 146 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchh--HHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 34445566778888888888899999999999999999987322111100 011111111111111 222222222 22
Q ss_pred HHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 106 QVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLF 185 (604)
Q Consensus 106 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 185 (604)
...+.++...+...+|+|+++++...+++.++|++++++++|++.+.+++..... +....+.+++++++++....+.++
T Consensus 147 ~~~~~~~r~~L~~~iy~K~L~l~~~~~~~~~~g~i~nl~s~Dv~~i~~~~~~~~~-~~~~pi~i~~~~~lL~~~~G~~~l 225 (1490)
T TIGR01271 147 HHLGMQMRIALFSLIYKKTLKLSSRVLDKISTGQLVSLLSNNLNKFDEGLALAHF-VWIAPLQVILLMGLIWELLEVNGF 225 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHhcCCCHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566677777889999999999999999999999999999999997654433 333344444455555555556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 186 PFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLIS 265 (604)
Q Consensus 186 v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (604)
+.++++++.+.+..++.+++.+..++.++..++..+.+.|.++|+++||+|+.|+.+.+++.+..++-.+...+......
T Consensus 226 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~ 305 (1490)
T TIGR01271 226 CGLGFLILLALFQACLGQKMMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRY 305 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777778888899999999999999999999999999999999999999999887777655544444444443332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy13349 266 SFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISH-WVMWEIAALFESIGTIQDGMNMLSKKYKI 344 (604)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (604)
+...+..+.. ..+.++.+++|.+..+ ++++.+++++.++..+..++. .+...+..+.++...+++..+++..+...
T Consensus 306 ~~~~~~~~~~--~~~~~~~f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~ 382 (1490)
T TIGR01271 306 FYSSAFFFSG--FFVVFLSVVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYK 382 (1490)
T ss_pred HHHHHHHHHH--HHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Confidence 2222222111 2233445556665544 678888887777666654432 23333344444555566666666443211
Q ss_pred ccCcccccccccCceEEEEEEEEEeCC---------------------------------CCceeeecceEEeCCcEEEE
Q psy13349 345 VDNYNAKRLVVTNGKIFFKNVSFSYDQ---------------------------------KHLIINNLSLTIQPGEKIGL 391 (604)
Q Consensus 345 ~~~~~~~~~~~~~~~i~~~~vsf~y~~---------------------------------~~~~l~~isl~i~~G~~~~i 391 (604)
+. .. ......++++|++|+|+. .+++|+|+||+|++||+++|
T Consensus 383 -~~--~~--~~~~~~i~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I 457 (1490)
T TIGR01271 383 -TL--EY--NLTTTEVEMVNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAV 457 (1490)
T ss_pred -cc--cc--cCCCCceEEecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEE
Confidence 10 00 011235888888888842 13589999999999999999
Q ss_pred EcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHH
Q psy13349 392 VGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAK 471 (604)
Q Consensus 392 vG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~ 471 (604)
+||||||||||+++|+|+++|++|+|.++| .|+||+|+|++|++|++|||.+|.+ .++++..++++
T Consensus 458 ~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~ 523 (1490)
T TIGR01271 458 AGSTGSGKSSLLMMIMGELEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIK 523 (1490)
T ss_pred ECCCCCCHHHHHHHHhCCCCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHH
Confidence 999999999999999999999999999998 5999999999999999999999865 45566777788
Q ss_pred HchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHH-HHHHhCC
Q psy13349 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS-LYNLMKG 550 (604)
Q Consensus 472 ~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~-i~~~~~~ 550 (604)
.+++++++..+|+ |++|.+|++|.+|||||||||+||||++++|+++|||||||+||+++++.+.+. +.+..++
T Consensus 524 ~~~L~~~l~~l~~-----g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~ 598 (1490)
T TIGR01271 524 ACQLEEDIALFPE-----KDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSN 598 (1490)
T ss_pred HHhHHHHHHhccc-----cccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcC
Confidence 8889999999998 999999999999999999999999999999999999999999999999999974 6666679
Q ss_pred cEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHH
Q psy13349 551 KTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598 (604)
Q Consensus 551 ~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~ 598 (604)
+|+|+|||+++.++.||+|++|++|++++.|+++++.+.++.|.+.+.
T Consensus 599 ~tvilvtH~~~~~~~ad~ii~l~~g~i~~~g~~~~l~~~~~~~~~~~~ 646 (1490)
T TIGR01271 599 KTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSELQAKRPDFSSLLL 646 (1490)
T ss_pred CeEEEEeCChHHHHhCCEEEEEECCEEEEEcCHHHHHhcChHHHHHHh
Confidence 999999999999999999999999999999999999988777877763
No 46
>PTZ00243 ABC transporter; Provisional
Probab=100.00 E-value=2.3e-61 Score=588.61 Aligned_cols=547 Identities=16% Similarity=0.217 Sum_probs=414.6
Q ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHH
Q psy13349 26 SFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFK 104 (604)
Q Consensus 26 ~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~ 104 (604)
..++...+.+++.++..+++.++..++.++.|++++.+++.+...+. . +. ....++..+++..++ .++.....+.
T Consensus 233 ~l~~~l~~~~~~~~~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~~~-~-~~-~g~~l~~~l~~~~~~~~~~~~~~~~~- 308 (1560)
T PTZ00243 233 SLLRTLFAALPYYVWWQIPFKLLSDVCTLTLPVLLKYFVKFLDADNA-T-WG-RGLGLVLTLFLTQLIQSVCLHRFYYI- 308 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-c-hh-HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 45566778888999999999999999999999999999997643221 1 11 001111111111111 2222222222
Q ss_pred HHHHHhhHHHHHHHHHHHHHHcCCccccc--ccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 105 HQVLSGNFPMLLRWNFHRLILNQSINFFQ--EEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 105 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
....+.++...++..+|+|+++++...+. +..+|++++.+++|++.+.+++..... +....+.+++.++++..+-.+
T Consensus 309 ~~r~~~~~r~~L~~~if~K~l~ls~~~~~~~~~~~G~i~nl~s~Dv~~i~~~~~~~~~-l~~~Pl~li~~~~lL~~~lG~ 387 (1560)
T PTZ00243 309 SIRCGLQYRSALNALIFEKCFTISSKSLAQPDMNTGRIINMMSTDVERINSFMQYCMY-LWSSPMVLLLSILLLSRLVGW 387 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhhCCCCCCHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhH
Confidence 23445567778889999999999988776 458999999999999999998755433 344455555556666666566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
.+++.++++++.+.+..++.+++.+..++..+..++..+...|.++|+++||.++.|+.+.+++++..++-.+...+...
T Consensus 388 ~al~gv~vl~v~~pl~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~ 467 (1560)
T PTZ00243 388 CALMAVAVLLVTLPLNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQL 467 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67777777777777888899999999999999999999999999999999999999999988887765544444444444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKY 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (604)
...+...+......+. .++.++.|.+.++.+++|.+++++.++..+..|+..+...+..+..+...++++.++++.++
T Consensus 468 ~~~~~~~~~~~~p~l~--~~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e 545 (1560)
T PTZ00243 468 ARVATSFVNNATPTLM--IAVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDN 545 (1560)
T ss_pred HHHHHHHHHHHHHHHH--HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcc
Confidence 4333333322222222 22355677788899999999999999988888877666666667777777777766664322
Q ss_pred c-------cccC--------cc-c-----c------------------------------------c-ccccCceEEEEE
Q psy13349 343 K-------IVDN--------YN-A-----K------------------------------------R-LVVTNGKIFFKN 364 (604)
Q Consensus 343 ~-------~~~~--------~~-~-----~------------------------------------~-~~~~~~~i~~~~ 364 (604)
. ..+. .. . . + .......+.++|
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 625 (1560)
T PTZ00243 546 ATCSTVQDMEEYWREQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVED 625 (1560)
T ss_pred ccccccccchhhcccccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccc
Confidence 0 0000 00 0 0 0 000112466777
Q ss_pred EEEEeC---------------------------------------CCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHH
Q psy13349 365 VSFSYD---------------------------------------QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNL 405 (604)
Q Consensus 365 vsf~y~---------------------------------------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~l 405 (604)
++|.++ +++++|+|+||+|++||+++|+||||||||||+++
T Consensus 626 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~ 705 (1560)
T PTZ00243 626 TDYGSPSSASRHIVEGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQS 705 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHH
Confidence 776532 12458999999999999999999999999999999
Q ss_pred HhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhh
Q psy13349 406 LLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDE 485 (604)
Q Consensus 406 l~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~ 485 (604)
|+|+++|++|+|.++ ++|+|+||+|++|++|++|||.++.+ .++++..++++.+++++.++.+|+
T Consensus 706 i~G~~~~~~G~i~~~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~-~~~~~~~~~~~~~~l~~~l~~l~~- 770 (1560)
T PTZ00243 706 LLSQFEISEGRVWAE-------------RSIAYVPQQAWIMNATVRGNILFFDE-EDAARLADAVRVSQLEADLAQLGG- 770 (1560)
T ss_pred HhcCCCCCCcEEEEC-------------CeEEEEeCCCccCCCcHHHHHHcCCh-hhHHHHHHHHHHhhhHHHHHHhhc-
Confidence 999999999999863 47999999999999999999999875 355667788888899999999999
Q ss_pred hhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHH-HHHHhCCcEEEEEccChhHHh
Q psy13349 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS-LYNLMKGKTVIAIAHRLSTIS 564 (604)
Q Consensus 486 ~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~-i~~~~~~~t~i~itH~l~~~~ 564 (604)
|++|.+|++|.+||||||||++||||++.+|+++|||||||+||+++++.+.+. +....+++|+|+|||+++.++
T Consensus 771 ----g~~t~i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~ 846 (1560)
T PTZ00243 771 ----GLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVP 846 (1560)
T ss_pred ----cchHHhcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999999999999999988764 444446899999999999999
Q ss_pred hcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHHH
Q psy13349 565 AMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRH 599 (604)
Q Consensus 565 ~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~~ 599 (604)
.||+|++|++|+++++|+++|+++. +.|.++...
T Consensus 847 ~ad~ii~l~~G~i~~~G~~~~l~~~-~~~~~~~~~ 880 (1560)
T PTZ00243 847 RADYVVALGDGRVEFSGSSADFMRT-SLYATLAAE 880 (1560)
T ss_pred hCCEEEEEECCEEEEecCHHHHHhC-hHHHHHHHh
Confidence 9999999999999999999999874 467777653
No 47
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=1.7e-54 Score=441.28 Aligned_cols=236 Identities=28% Similarity=0.461 Sum_probs=221.3
Q ss_pred ceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 358 GKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 358 ~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
+.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|.+||.++..++..++|+.+
T Consensus 1 g~i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~i 79 (275)
T cd03289 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKAF 79 (275)
T ss_pred CeEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhhE
Confidence 36899999999964 4579999999999999999999999999999999999998 789999999999999999999999
Q ss_pred eEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 437 GMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 437 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+||||++.+|++|++||+....+ .++++++++++.+++.+++.++|+ +++|.++++|.+||||||||++||||+
T Consensus 80 ~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~-----~l~~~~~~~g~~LS~G~~qrl~LaRal 153 (275)
T cd03289 80 GVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPG-----QLDFVLVDGGCVLSHGHKQLMCLARSV 153 (275)
T ss_pred EEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcc-----cccceecCCCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999964332 467899999999999999999998 999999999999999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHH
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l 596 (604)
+++|+|+||||||++||+.+.+.+.+.|++..+++|+|+||||++++..||||++|++|++++.|++++|++..+.|+++
T Consensus 154 l~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~~~~~~~~ 233 (275)
T cd03289 154 LSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQA 233 (275)
T ss_pred hcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhCcHHHHHH
Confidence 99999999999999999999999999999877789999999999999999999999999999999999999988888888
Q ss_pred HHHh
Q psy13349 597 WRHQ 600 (604)
Q Consensus 597 ~~~q 600 (604)
+...
T Consensus 234 ~~~~ 237 (275)
T cd03289 234 ISPS 237 (275)
T ss_pred Hhhc
Confidence 8654
No 48
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.7e-54 Score=403.85 Aligned_cols=218 Identities=30% Similarity=0.480 Sum_probs=186.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC-CCHHHHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN-VSQESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~-~~~~~~r~~i~ 437 (604)
.|+++||+++|++ ..+|+|||++|++||.++|+||||||||||++||.++.+|++|+|.+||.++.. .+...+|+.+|
T Consensus 2 mi~i~~l~K~fg~-~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~vG 80 (240)
T COG1126 2 MIEIKNLSKSFGD-KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRKVG 80 (240)
T ss_pred eEEEEeeeEEeCC-eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHhcC
Confidence 4899999999975 569999999999999999999999999999999999999999999999987743 36788999999
Q ss_pred EEcccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
+|+|+..||+- |+.||++++.- ..+.+|-.+.+ .+.++. .|+......-..+|||||+||+|||
T Consensus 81 mVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A-----~~lL~~-------VGL~~ka~~yP~qLSGGQqQRVAIA 148 (240)
T COG1126 81 MVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKA-----LELLEK-------VGLADKADAYPAQLSGGQQQRVAIA 148 (240)
T ss_pred eecccccccccchHHHHHHhhhHHHcCCCHHHHHHHH-----HHHHHH-------cCchhhhhhCccccCcHHHHHHHHH
Confidence 99999999966 99999998732 12322222111 111111 2554445555669999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|||.-+|+++++|||||||||+...++++.++++. .+.|.++|||.+..++. ||||+.||+|+|+|+|+++++..+
T Consensus 149 RALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~ 226 (240)
T COG1126 149 RALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDN 226 (240)
T ss_pred HHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcC
Confidence 99999999999999999999999999999999887 58999999999999988 799999999999999999999875
No 49
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=100.00 E-value=5.2e-51 Score=409.12 Aligned_cols=235 Identities=50% Similarity=0.803 Sum_probs=217.1
Q ss_pred EEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 360 IFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVGV 80 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEEE
Confidence 478999999974 3579999999999999999999999999999999999999999999999999988777788899999
Q ss_pred EcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 439 VTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
+||++.+|+.|++||+.++.+..+.+++.++++..++.+++..+|. |+++..+..+.+||||||||++||||++.
T Consensus 81 ~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----~~~~~~~~~~~~LSgG~~qrv~laral~~ 155 (237)
T cd03252 81 VLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPE-----GYDTIVGEQGAGLSGGQRQRIAIARALIH 155 (237)
T ss_pred EcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcc-----cccchhhcCCCcCCHHHHHHHHHHHHHhh
Confidence 9999999999999999987654556667777777888899999988 99999999999999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHH
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~ 598 (604)
+|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+++++.++.+.|+.+++
T Consensus 156 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~~ 235 (237)
T cd03252 156 NPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235 (237)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhccChHHHHHh
Confidence 99999999999999999999999999988778999999999999988999999999999999999999999999998875
Q ss_pred H
Q psy13349 599 H 599 (604)
Q Consensus 599 ~ 599 (604)
.
T Consensus 236 ~ 236 (237)
T cd03252 236 L 236 (237)
T ss_pred c
Confidence 3
No 50
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.7e-51 Score=405.00 Aligned_cols=214 Identities=36% Similarity=0.562 Sum_probs=185.7
Q ss_pred EEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHH
Q psy13349 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ---ESL 432 (604)
Q Consensus 360 i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~---~~~ 432 (604)
|+++|||+.|+.. ..+|+||||+|++||+.||||+||||||||++|+.++-.|++|+|.+||+|+..++. ...
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999862 469999999999999999999999999999999999999999999999999988775 556
Q ss_pred hccceEEcccCcCCc-ccHHHHHhcCCC--CCCHHHH----HHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 433 REQIGMVTQDTSLLH-RSIRDNILYGRP--DASECEL----FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i----~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
|++||+++|++.|++ -|+.||+.|.-. ..+.+++ .+.++.+ |+....+....+||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelV----------------gL~dk~~~yP~qLSGG 145 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELV----------------GLSDKADRYPAQLSGG 145 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHc----------------CChhhhccCchhcCcc
Confidence 789999999999997 599999998532 2233332 2222222 5555555667799999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecC
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 582 (604)
||||++|||||..+|+||+.|||||||||+|.+.|++.|++.. -+-|+++|||.++.++. |||+.||++|+++|+|+
T Consensus 146 QKQRVaIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~ 225 (339)
T COG1135 146 QKQRVAIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225 (339)
T ss_pred hhhHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEecc
Confidence 9999999999999999999999999999999999999998775 38999999999999987 99999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
-.|+...
T Consensus 226 v~~vF~~ 232 (339)
T COG1135 226 VSEVFAN 232 (339)
T ss_pred HHHhhcC
Confidence 9888654
No 51
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-51 Score=385.79 Aligned_cols=219 Identities=30% Similarity=0.435 Sum_probs=195.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-----cEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY-----GEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~-----G~I~i~g~~~~~--~~~~ 430 (604)
..++++|+++.|++ +.+|+|||++|++++++|++|||||||||+++++.|+.+..+ |+|.++|+|+.+ ++.-
T Consensus 6 ~~~~~~~l~~yYg~-~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~~ 84 (253)
T COG1117 6 PAIEVRDLNLYYGD-KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDVV 84 (253)
T ss_pred ceeEecceeEEECc-hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCHH
Confidence 46899999999974 579999999999999999999999999999999999999876 999999999976 5788
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCC--CC----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRP--DA----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
++|++||+|+|.|.-|+.||+||+.+|.. .. -|+.++.+++.|.+++-+.. .+.+.+..|||
T Consensus 85 ~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD------------rL~~sa~~LSG 152 (253)
T COG1117 85 ELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD------------RLHKSALGLSG 152 (253)
T ss_pred HHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH------------HhhCCccCCCh
Confidence 99999999999999999999999999942 11 24557778888888775432 23456778999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
||+||+||||||.-+|+||+||||||||||.+..+|.+.|.+++++-||++|||.+.-+.+ +|+..++..|++||.|..
T Consensus 153 GQQQRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T 232 (253)
T COG1117 153 GQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPT 232 (253)
T ss_pred hHHHHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCH
Confidence 9999999999999999999999999999999999999999999999999999999997766 799999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++-.+
T Consensus 233 ~~iF~~ 238 (253)
T COG1117 233 DKIFTN 238 (253)
T ss_pred HhhhcC
Confidence 988754
No 52
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=2.8e-51 Score=393.34 Aligned_cols=217 Identities=34% Similarity=0.544 Sum_probs=186.7
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
|+|+|||++|.+ +.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||.++++++.-++|++||||
T Consensus 2 I~~~nvsk~y~~-~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IGYv 80 (309)
T COG1125 2 IEFENVSKRYGN-KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIGYV 80 (309)
T ss_pred ceeeeeehhcCC-ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhhhh
Confidence 789999999984 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCCcc-cHHHHHhcCCCC---CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc--ccccCCCCCChhHHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRPD---ASECELFNAAKCAEADIFIKSLTDEHGRKGYDA--HVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~~---~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t--~v~e~g~~LSgGq~QrialA 513 (604)
-|..-||+- ||.|||.+- |. -+.+++.+- .++.+.. .|++. ....-...|||||+||+.+|
T Consensus 81 iQqigLFPh~Tv~eNIa~V-P~L~~w~k~~i~~r-----~~ELl~l-------vgL~p~~~~~RyP~eLSGGQQQRVGv~ 147 (309)
T COG1125 81 IQQIGLFPHLTVAENIATV-PKLLGWDKERIKKR-----ADELLDL-------VGLDPSEYADRYPHELSGGQQQRVGVA 147 (309)
T ss_pred hhhcccCCCccHHHHHHhh-hhhcCCCHHHHHHH-----HHHHHHH-------hCCCHHHHhhcCchhcCcchhhHHHHH
Confidence 999999965 999999874 43 233333221 1221111 14543 23344668999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhH-HhhcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLST-ISAMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~-~~~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
|||..+|+|++||||++||||.++.++++-+.++.+ ++|+|+|||+++. ++.+|||.+|++|++++.|+|++++++.
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999998877643 8999999999986 4669999999999999999999998763
No 53
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.9e-50 Score=400.69 Aligned_cols=235 Identities=54% Similarity=0.874 Sum_probs=217.9
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~ 80 (236)
T cd03253 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIGVV 80 (236)
T ss_pred CEEEEEEEEeCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEEEE
Confidence 47899999997545699999999999999999999999999999999999999999999999999888888888899999
Q ss_pred cccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q psy13349 440 TQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN 519 (604)
Q Consensus 440 ~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~ 519 (604)
+|++.+|+.|++||+.++.+..+++++..+++..++.+.+..+|. |+++.+.+....||||||||++|||||+++
T Consensus 81 ~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-----~~~~~~~~~~~~LS~G~~~rl~la~aL~~~ 155 (236)
T cd03253 81 PQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPD-----GYDTIVGERGLKLSGGEKQRVAIARAILKN 155 (236)
T ss_pred CCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccc-----cccchhhcCCCcCCHHHHHHHHHHHHHhcC
Confidence 999999999999999998666666777777888888888899988 999999999999999999999999999999
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHHH
Q psy13349 520 APILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRH 599 (604)
Q Consensus 520 p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~~ 599 (604)
|+++||||||++||+.+...+.+.|.+..+++|+|++||+++.+..||++++|++|++++.|+.+++.+..+.|+.++..
T Consensus 156 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~~~~~~~~~~~ 235 (236)
T cd03253 156 PPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235 (236)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhcccHHHHHHhc
Confidence 99999999999999999999999998876688999999999999889999999999999999999998888888887764
No 54
>PRK14257 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4e-50 Score=419.41 Aligned_cols=223 Identities=31% Similarity=0.463 Sum_probs=194.8
Q ss_pred ccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--
Q psy13349 355 VTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN-- 426 (604)
Q Consensus 355 ~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~-- 426 (604)
+..+.|+++|++++|++ .+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 76 ~~~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred CcCceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 34567999999999974 4579999999999999999999999999999999999996 579999999999973
Q ss_pred CCHHHHhccceEEcccCcCCcccHHHHHhcCCC--CCCHHHHH-----HHHHHchHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 427 VSQESLREQIGMVTQDTSLLHRSIRDNILYGRP--DASECELF-----NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 427 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~~~~~i~-----~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
.+...+|+.++||||+|++|++|++||+.++.+ ..++++.+ ++++.++ +++ ++++.++++|
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~-------L~~-----~l~~~~~~~~ 223 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAA-------LWD-----EVKDDLDKAG 223 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcC-------Ccc-----hhhhhhhCCc
Confidence 445678999999999999999999999998642 23344432 2233333 233 5678899999
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEe
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVA 578 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv 578 (604)
.+||||||||++||||++++|+|+|||||||+||+.+...+.+.|+++.+++|+|+|||+++++.. ||||++|++|+|+
T Consensus 224 ~~LSgGqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~ 303 (329)
T PRK14257 224 NALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIE 303 (329)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999999988888999999999999877 9999999999999
Q ss_pred EecChhHHhhc
Q psy13349 579 EEGSHLDLLKK 589 (604)
Q Consensus 579 ~~g~~~~l~~~ 589 (604)
|.|+++++.+.
T Consensus 304 e~g~~~~l~~~ 314 (329)
T PRK14257 304 EAGETKTIFIH 314 (329)
T ss_pred EeCCHHHHhcC
Confidence 99999999864
No 55
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1.9e-49 Score=402.36 Aligned_cols=239 Identities=34% Similarity=0.562 Sum_probs=219.1
Q ss_pred cCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q psy13349 356 TNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE 434 (604)
Q Consensus 356 ~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~ 434 (604)
..+.++++|++++|++. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++
T Consensus 16 ~~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~~ 95 (257)
T cd03288 16 LGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTLRS 95 (257)
T ss_pred CCceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHHhh
Confidence 35679999999999753 46999999999999999999999999999999999999999999999999998888888899
Q ss_pred cceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 435 QIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 435 ~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
.++|++|++.+|++|++||+..... ..++++.++++..++++++..+|. |+++.+++.+.+|||||+||++|||
T Consensus 96 ~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~-----~l~~~~~~~~~~LS~G~~qrl~lar 169 (257)
T cd03288 96 RLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPG-----GLDAVVTEGGENFSVGQRQLFCLAR 169 (257)
T ss_pred hEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhccc-----ccCcEeccCCCcCCHHHHHHHHHHH
Confidence 9999999999999999999976432 345567778888888999999998 9999999999999999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhc-CcHH
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLY 593 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~y 593 (604)
|++++|+++||||||++||+.+++.+.+.+++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+. ++.|
T Consensus 170 al~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~ 249 (257)
T cd03288 170 AFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVF 249 (257)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHH
Confidence 999999999999999999999999999999887778999999999999989999999999999999999999875 5779
Q ss_pred HHHHHHh
Q psy13349 594 SRLWRHQ 600 (604)
Q Consensus 594 ~~l~~~q 600 (604)
+++|..+
T Consensus 250 ~~~~~~~ 256 (257)
T cd03288 250 ASLVRTD 256 (257)
T ss_pred HHHHhcc
Confidence 8888654
No 56
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-49 Score=396.48 Aligned_cols=227 Identities=52% Similarity=0.821 Sum_probs=210.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++.+++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++|
T Consensus 2 ~l~~~~l~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 81 (229)
T cd03254 2 EIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSMIGV 81 (229)
T ss_pred eEEEEEEEEecCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhhEEE
Confidence 58999999999754569999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 439 VTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
++|++.+|++|++||+.++.+...++++.++++..++.++++.+|. |+++.++....+||||||||++|||||+.
T Consensus 82 ~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~LS~G~~~rv~la~al~~ 156 (229)
T cd03254 82 VLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPN-----GYDTVLGENGGNLSQGERQLLAIARAMLR 156 (229)
T ss_pred ecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcc-----cccCHhhcCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998665566777778888889999999998 99999999999999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
+|+++||||||++||+.+.+.+.+.+++..+++|+|++||+++.++.||++++|++|++++.|+.+++.+..
T Consensus 157 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~~ 228 (229)
T cd03254 157 DPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKK 228 (229)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhhC
Confidence 999999999999999999999999998887789999999999999889999999999999999988887654
No 57
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=100.00 E-value=2.3e-46 Score=405.77 Aligned_cols=504 Identities=18% Similarity=0.194 Sum_probs=363.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHH
Q psy13349 43 IFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKHQVLSGNFPMLLRWNFH 121 (604)
Q Consensus 43 ~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~~l~ 121 (604)
+++.++++...+......+.+.|++...+...++. .+.+..+.+.+ ..+.....++. ..+..+.-.-+-..+.
T Consensus 53 ~~~~l~~v~~~v~~~~w~~~~~~aL~~~d~~~f~~-----~l~~f~~ia~~~v~~~v~~~~L~-~~l~~~wR~wLt~~l~ 126 (604)
T COG4178 53 LALILLSVRGQVLLNDWNGPFYNALARRDLAAFWQ-----QLQVFAIIAGLLVLLNVAQTWLN-QMLRLRWREWLTKDLL 126 (604)
T ss_pred HHHHHHHhheeeeeHhhhhHHHHHHHHhhHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 33444555555566667788888776544332221 11111111111 11222222221 2222233334444566
Q ss_pred HHHHcCCcccccccc-----hhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHH
Q psy13349 122 RLILNQSINFFQEEF-----AGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGT---------------FNV 181 (604)
Q Consensus 122 ~~ll~~~~~~f~~~~-----~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~---------------~~~ 181 (604)
++.+.....|+.... ....=+|+.+|+..+.+........++.+++.++.+.+++.. +..
T Consensus 127 ~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g 206 (604)
T COG4178 127 DRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLDLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPG 206 (604)
T ss_pred HHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccch
Confidence 666666643333322 123346888888888777666777777777777766666662 233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 182 YMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQM 261 (604)
Q Consensus 182 ~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 261 (604)
.+..++++..+...++..+++|++.+.+.+..+..+++...+.-.-++.+.|-.|+.|+.+.++.++.+....+...+..
T Consensus 207 ~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~ 286 (604)
T COG4178 207 YMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYSLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLV 286 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555556667788999999999999999999999999999999999999999999999888887777666666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---Hhh
Q psy13349 262 RLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGM---NML 338 (604)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~l 338 (604)
........+....+.+..++-+.+++-....|.++.|.++.....+.++...++|+...+..+..-.+.+.+.. ..+
T Consensus 287 ~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmqa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai 366 (604)
T COG4178 287 RAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQAL 366 (604)
T ss_pred HHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 66655555555555555555566666778899999999999998888888888888776655544333333332 233
Q ss_pred c---cccccccCcccc-cc-cccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13349 339 S---KKYKIVDNYNAK-RL-VVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413 (604)
Q Consensus 339 ~---~~~~~~~~~~~~-~~-~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~ 413 (604)
+ .+.+........ .. ...+..|+++|++..-|++...+++.||++++||.+-|.||||||||||++.|+|++|..
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g 446 (604)
T COG4178 367 EAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWG 446 (604)
T ss_pred HhccCcccccCcccccccccccccceeEEeeeeEECCCCCeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccC
Confidence 2 111111110000 00 001467999999999998778999999999999999999999999999999999999999
Q ss_pred ccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCC
Q psy13349 414 YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGY 491 (604)
Q Consensus 414 ~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~ 491 (604)
+|+|..-. -+.+-|+||.|++-.||+||-|+|.++. .+|+++.+++.++++.++++++.+ .
T Consensus 447 ~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~------~ 509 (604)
T COG4178 447 SGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDE------E 509 (604)
T ss_pred CCceecCC-----------CCceEEecCCCCCCCccHHHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhc------c
Confidence 99986642 1258999999999999999999997654 789999999999999999998764 2
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEE
Q psy13349 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIV 571 (604)
Q Consensus 492 ~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~v 571 (604)
+. =...||+||+||+|+||.++++|++++|||+|||||+++|..+++.+++..++.|+|.|+||.......++.+.
T Consensus 510 ~~----W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~ 585 (604)
T COG4178 510 DR----WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLE 585 (604)
T ss_pred Cc----HhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhhee
Confidence 22 24579999999999999999999999999999999999999999999998899999999999998888777776
Q ss_pred Ee
Q psy13349 572 LD 573 (604)
Q Consensus 572 l~ 573 (604)
++
T Consensus 586 l~ 587 (604)
T COG4178 586 LL 587 (604)
T ss_pred ec
Confidence 64
No 58
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-49 Score=396.27 Aligned_cols=232 Identities=52% Similarity=0.854 Sum_probs=213.5
Q ss_pred EEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 360 IFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIGL 80 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEEE
Confidence 4789999999753 369999999999999999999999999999999999999999999999999887777788889999
Q ss_pred EcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 439 VTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
++|++.+|+.|++||+.++.+..+.+++.+.++..++.+++..+|. |+++..+.....||||||||++|||||++
T Consensus 81 ~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~l~~~~~~~~~~LS~G~~qrv~la~al~~ 155 (234)
T cd03251 81 VSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPE-----GYDTVIGERGVKLSGGQRQRIAIARALLK 155 (234)
T ss_pred eCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhccc-----CcceeeccCCCcCCHHHHHHHHHHHHHhc
Confidence 9999999999999999998665556667777777888899999987 89999999999999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHH
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l 596 (604)
+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|+.+++.+..+.|+.+
T Consensus 156 ~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~ 233 (234)
T cd03251 156 DPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKL 233 (234)
T ss_pred CCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHcCcchhhh
Confidence 999999999999999999999999999887789999999999999889999999999999999999998887776653
No 59
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=100.00 E-value=7.2e-50 Score=395.20 Aligned_cols=215 Identities=34% Similarity=0.525 Sum_probs=189.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++|+|+ ++++|+|+||++++||+++|+||||||||||+|+|+|+.+|.+|+|.+||+++.+++.+++.+.++|
T Consensus 2 ~L~~~~ls~~y~-~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~ia~ 80 (258)
T COG1120 2 MLEVENLSFGYG-GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKLAY 80 (258)
T ss_pred eeEEEEEEEEEC-CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhEEE
Confidence 478999999997 4679999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcccCc-CCcccHHHHHhcCCC-C------CC---HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHH
Q psy13349 439 VTQDTS-LLHRSIRDNILYGRP-D------AS---ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQR 507 (604)
Q Consensus 439 v~Q~~~-lf~~ti~eNi~~g~~-~------~~---~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~ 507 (604)
|||++. -|.-|++|-+.+|+- . .+ ++.+.++++..++.++. .+.-..||||||
T Consensus 81 vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la----------------~r~~~~LSGGer 144 (258)
T COG1120 81 VPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLA----------------DRPVDELSGGER 144 (258)
T ss_pred eccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHh----------------cCcccccChhHH
Confidence 999975 456699999999962 1 12 22455666666665543 233458999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChh
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~ 584 (604)
||+.|||||.++|++|+||||||+||...+-++++.++++. +++|+|+|.|+++.+ +.||++++|++|+++.+|+++
T Consensus 145 Qrv~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~ 224 (258)
T COG1120 145 QRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPE 224 (258)
T ss_pred HHHHHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcc
Confidence 99999999999999999999999999999999999999886 379999999999865 559999999999999999999
Q ss_pred HHhhcC
Q psy13349 585 DLLKKN 590 (604)
Q Consensus 585 ~l~~~~ 590 (604)
|.+..+
T Consensus 225 evlT~e 230 (258)
T COG1120 225 EVLTEE 230 (258)
T ss_pred hhcCHH
Confidence 988654
No 60
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=4e-46 Score=375.75 Aligned_cols=520 Identities=20% Similarity=0.234 Sum_probs=352.8
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 28 ILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQV 107 (604)
Q Consensus 28 l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 107 (604)
+....|++++.++..+.++++++..+.....++....-. ...... ...++...+...+ .+.+.+.... ...
T Consensus 4 ll~llr~nr~~~i~~~a~s~a~g~~g~~lLa~in~al~e---~~~~~~--~~l~~f~~llllf---~~ss~is~lg-~t~ 74 (546)
T COG4615 4 LLLLLRQNRWPFISVMALSLASGALGIGLLAFINQALIE---TADTSL--LVLPEFLGLLLLF---MVSSLISQLG-LTT 74 (546)
T ss_pred HHHHhcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcccce--eeHHHHHHHHHHH---HHHHHHHHHH-HHH
Confidence 345678899999999999998888877654443332221 111111 1111211111111 2223333322 235
Q ss_pred HHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 108 LSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPF 187 (604)
Q Consensus 108 ~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~ 187 (604)
.++.+...+|.++.++++..|+..+++.+++.++.++++|++.+. +-...++.+.++.+..++.++.+.++|+++.++.
T Consensus 75 ~gq~~I~klr~~~~~kil~tplerier~~~~rlla~L~~Dvr~IS-f~~s~lp~~~qa~il~l~s~aYLayLSp~mf~l~ 153 (546)
T COG4615 75 LGQHFIYKLRSEFIKKILDTPLERIERLGSARLLAGLTSDVRNIS-FAFSRLPELVQAIILTLGSAAYLAYLSPKMFLLT 153 (546)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHHHHHHhcccchhhhhccccccee-ehHhhhHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 577889999999999999999999999999999999999999887 4445556566777777888899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 188 VIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSF 267 (604)
Q Consensus 188 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (604)
++++.+.++...+.+.+..+......+...++.+..+..++|.++++....-. .....+......+...+.......+
T Consensus 154 vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~--~~~h~~~~~~~a~~~r~~~~~~n~f 231 (546)
T COG4615 154 VVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA--EYVHNNLYIPDAQEYRHHIIRANTF 231 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH--HHHHhhhcCcchHHHHhhhhhhhHH
Confidence 99999988888888888888888888999999999999999999999853211 1112121111111111111111122
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy13349 268 EIINHLLAMLLILGTTGCALFLWTK-GILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVD 346 (604)
Q Consensus 268 ~~~~~~~~~~~~~~i~~~g~~lv~~-g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (604)
.........++....++...|+... ++-+.-....+......+.+|+..++..++.+..+....++..+. +..+...+
T Consensus 232 ~~la~~~~ni~l~~lIGlvf~lal~~~w~st~~a~tivlvlLflr~pL~s~vgilP~l~~AqvA~~kiakl-e~~~~~a~ 310 (546)
T COG4615 232 HLLAVNWSNIMLLGLIGLVFWLALSLGWASTNVAATIVLVLLFLRTPLLSAVGILPTLLTAQVAFNKIAKL-ELAPYKAD 310 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHhhHHHHHHhhhhHHHHHHHHHHHHHHh-hcCCcccc
Confidence 1111112222233333333334332 222222222222223334455555544444444333333333221 11111111
Q ss_pred CcccccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC
Q psy13349 347 NYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN 426 (604)
Q Consensus 347 ~~~~~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~ 426 (604)
-..+.. .+.-..++++||.|+|++..--+..||++|++||.|-|+|.|||||||++++|.|+|.|++|+|.+||.++..
T Consensus 311 ~~~~q~-~p~~~~lelrnvrfay~~~~FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~ 389 (546)
T COG4615 311 FPRPQA-FPDWKTLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSA 389 (546)
T ss_pred CCCCCc-CCcccceeeeeeeeccCcccceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCC
Confidence 111111 1223579999999999875456889999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHhccceEEcccCcCCcccHHHHHhcCCCC-CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccC---CCCC
Q psy13349 427 VSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD-ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEH---GIKL 502 (604)
Q Consensus 427 ~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~-~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~---g~~L 502 (604)
-+++++|+-++-|+-|.+||+.++ |... ++++.+..-++...+. -.|.+.++ ...|
T Consensus 390 e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~--------------~ktsl~d~~fs~~kL 449 (546)
T COG4615 390 EQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELA--------------HKTSLNDGRFSNLKL 449 (546)
T ss_pred CCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHh--------------hhhcccCCccccccc
Confidence 999999999999999999998644 3222 5555554333322221 12222221 2579
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHH-h-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL-M-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~-~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
|-|||.|+|+--|++.+.||+++||=.+-=||.=++.+.+.+... + +||||+.|||+-.....|||++.|++|+++|.
T Consensus 450 StGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 450 STGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred ccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHHHHHhcCceeec
Confidence 999999999999999999999999999999999999997776433 3 59999999999999999999999999999986
Q ss_pred c
Q psy13349 581 G 581 (604)
Q Consensus 581 g 581 (604)
-
T Consensus 530 t 530 (546)
T COG4615 530 T 530 (546)
T ss_pred c
Confidence 4
No 61
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=100.00 E-value=1e-48 Score=392.70 Aligned_cols=234 Identities=54% Similarity=0.817 Sum_probs=212.9
Q ss_pred EEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 360 IFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 360 i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
++++|+++.|++ +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 468999999975 246999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 438 MVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 438 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|. |+++..+....+||||||||++||||++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~~~~LS~G~~qrv~la~al~ 155 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPD-----GYDTLVGERGSQLSGGQKQRIAIARALL 155 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhcc-----ccceeeccCCccCCHHHHHHHHHHHHHh
Confidence 99999999989999999987655555666677777788888899998 9999999889999999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHH
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLW 597 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~ 597 (604)
.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.++.||++++|++|++++.|+.+++.+..+.++.++
T Consensus 156 ~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 235 (238)
T cd03249 156 RNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235 (238)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhcChhHHHHh
Confidence 99999999999999999999999999988767899999999999998999999999999999999999988777666665
Q ss_pred H
Q psy13349 598 R 598 (604)
Q Consensus 598 ~ 598 (604)
.
T Consensus 236 ~ 236 (238)
T cd03249 236 K 236 (238)
T ss_pred h
Confidence 3
No 62
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=2.1e-48 Score=385.99 Aligned_cols=218 Identities=43% Similarity=0.641 Sum_probs=204.0
Q ss_pred eEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 359 KIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
.++++|++++|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (221)
T cd03244 2 DIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSRIS 81 (221)
T ss_pred cEEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhhEE
Confidence 5899999999975 357999999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 438 MVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 438 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
|++|++.+|+.|++||+.+..+ .+.+++.++++..++.+++.++|. |+++.+++.+.+||||||||++|||||+
T Consensus 82 ~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~-----~l~~~~~~~~~~LS~G~~qr~~laral~ 155 (221)
T cd03244 82 IIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPG-----GLDTVVEEGGENLSVGQRQLLCLARALL 155 (221)
T ss_pred EECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhccc-----ccccccccCCCcCCHHHHHHHHHHHHHh
Confidence 9999999999999999987643 456788888899999999999988 9999999999999999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecC
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~ 582 (604)
.+|+++||||||++||+.+.+.+.+.+++..+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 156 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 156 RKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999998877799999999999999999999999999998876
No 63
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2.1e-48 Score=372.18 Aligned_cols=227 Identities=31% Similarity=0.502 Sum_probs=192.0
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhc
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---SLRE 434 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~---~~r~ 434 (604)
..|++++|+++|++ +.+++||||+|++||+.+|+||||||||||++++.|+..|++|+|.++|.|+.+++.+ .+|+
T Consensus 7 ~~I~vr~v~~~fG~-~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir~ 85 (263)
T COG1127 7 PLIEVRGVTKSFGD-RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIRK 85 (263)
T ss_pred ceEEEeeeeeecCC-EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHHh
Confidence 46999999999975 5799999999999999999999999999999999999999999999999999998864 5689
Q ss_pred cceEEcccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccc-cCCCCCChhHHHH
Q psy13349 435 QIGMVTQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVG-EHGIKLSGGQRQR 509 (604)
Q Consensus 435 ~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~-e~g~~LSgGq~Qr 509 (604)
++|+++|+.-||++ ||+||+.|--. ..++.++.+.+. . +| ...|+...+. .-...||||+++|
T Consensus 86 r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~-~-------KL----~~VGL~~~~~~~~PsELSGGM~KR 153 (263)
T COG1127 86 RMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVL-M-------KL----ELVGLRGAAADLYPSELSGGMRKR 153 (263)
T ss_pred heeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHH-H-------HH----HhcCCChhhhhhCchhhcchHHHH
Confidence 99999999999977 99999998422 234444443321 0 11 1125555532 3356899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHH
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 586 (604)
+|||||+.-||+|+++|||||+|||.+...+-+.|+++.+ +.|+++|||+++++.. ||||+++.+|+|+..|+++|+
T Consensus 154 vaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el 233 (263)
T COG1127 154 VALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEEL 233 (263)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988764 8999999999987755 799999999999999999999
Q ss_pred hhcCcHH-HHHH
Q psy13349 587 LKKNGLY-SRLW 597 (604)
Q Consensus 587 ~~~~~~y-~~l~ 597 (604)
.+.+..| ++++
T Consensus 234 ~~sd~P~v~qf~ 245 (263)
T COG1127 234 LASDDPWVRQFF 245 (263)
T ss_pred HhCCCHHHHHHh
Confidence 9876544 4444
No 64
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=2.8e-48 Score=376.69 Aligned_cols=204 Identities=34% Similarity=0.501 Sum_probs=171.4
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---H-H
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---S-L 432 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~---~-~ 432 (604)
++++||+..|..+ .++|+++||+|++||+++|+||||||||||+++|.|+..|++|+|.++|.|+..++.+ . .
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 5799999999653 3699999999999999999999999999999999999999999999999999988853 3 3
Q ss_pred hccceEEcccCcCCcc-cHHHHHhcCC--CCCC----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccc-cCCCCCCh
Q psy13349 433 REQIGMVTQDTSLLHR-SIRDNILYGR--PDAS----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVG-EHGIKLSG 504 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~-ti~eNi~~g~--~~~~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~-e~g~~LSg 504 (604)
|++||||+|+..|++. |++||+.+.. +... .+...+.++.. |+..... ....+|||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~l----------------gl~~~~~~~~p~eLSG 145 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVL----------------GLEDRLLKKKPSELSG 145 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhc----------------CChhhhccCCchhcCH
Confidence 5779999999999866 9999998521 1111 11222222222 4443333 44678999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEEeE
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~ 579 (604)
|||||+||||||+.+|++++.||||++||.++.+.|++.+.+.. .++|+|+|||+......|||++.|+||++.+
T Consensus 146 GqqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 146 GQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred HHHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999999999999999999998875 3789999999999999999999999999543
No 65
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.1e-48 Score=374.08 Aligned_cols=222 Identities=35% Similarity=0.497 Sum_probs=185.3
Q ss_pred eEEEEEEEEEeCCCC---ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHHhc
Q psy13349 359 KIFFKNVSFSYDQKH---LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESLRE 434 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~---~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~-~~~~r~ 434 (604)
.++++|+++.|+.++ ++++||||+|.+||++|||||||||||||.++|+|+..|++|+|.++|.+..... .+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 488999999998654 5999999999999999999999999999999999999999999999998876543 346788
Q ss_pred cceEEcccCc--CCcc-cHHHHHhcCC----CCCCHHHHHHHHHHchHHH-HHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 435 QIGMVTQDTS--LLHR-SIRDNILYGR----PDASECELFNAAKCAEADI-FIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 435 ~i~~v~Q~~~--lf~~-ti~eNi~~g~----~~~~~~~i~~a~~~~~~~~-~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
.|-+|+|||. +-+- |+++-|.=+- -+..+.++.++++.+++.+ |.. .....|||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~----------------R~P~eLSGGQ 146 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLD----------------RRPHELSGGQ 146 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHh----------------cCchhcChhH
Confidence 9999999996 3333 7776664321 1123445666666666532 333 3445899999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
||||||||||.-+|++||+|||||+||...+++|++.+.++.+ +-|.|+|||+++.++. ||||+||++|++||.++.
T Consensus 147 ~QRiaIARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~ 226 (252)
T COG1124 147 RQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226 (252)
T ss_pred HHHHHHHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeech
Confidence 9999999999999999999999999999999999999988875 5599999999999987 999999999999999999
Q ss_pred hHHhhc-CcHHHHH
Q psy13349 584 LDLLKK-NGLYSRL 596 (604)
Q Consensus 584 ~~l~~~-~~~y~~l 596 (604)
+++.+. ...|.+.
T Consensus 227 ~~l~~~~~h~ytr~ 240 (252)
T COG1124 227 EELLSHPSHPYTRE 240 (252)
T ss_pred hhhhcCCccHHHHH
Confidence 999887 4456553
No 66
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=100.00 E-value=5.5e-48 Score=382.79 Aligned_cols=218 Identities=43% Similarity=0.719 Sum_probs=200.2
Q ss_pred eEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 359 KIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
.++++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 ~l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (220)
T cd03245 2 RIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRNIG 81 (220)
T ss_pred eEEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhhEE
Confidence 58999999999753 56999999999999999999999999999999999999999999999999988777777788999
Q ss_pred EEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 438 MVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 438 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
|++|++.+|+.|++||+.++.+..+.+++.+.++..++.+.+...|. |++|.+.+...+||||||||++||||++
T Consensus 82 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----~~~~~~~~~~~~LSgG~~qrl~la~al~ 156 (220)
T cd03245 82 YVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPN-----GLDLQIGERGRGLSGGQRQAVALARALL 156 (220)
T ss_pred EeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccc-----cccceecCCCccCCHHHHHHHHHHHHHh
Confidence 99999999988999999887554456677778888888888888888 9999998888999999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEec
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g 581 (604)
.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.++.||++++|++|++++.|
T Consensus 157 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 157 NDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred cCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999886668999999999988889999999999998764
No 67
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=100.00 E-value=3.5e-48 Score=405.71 Aligned_cols=223 Identities=31% Similarity=0.485 Sum_probs=187.8
Q ss_pred EEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---Hh
Q psy13349 360 IFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES---LR 433 (604)
Q Consensus 360 i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~---~r 433 (604)
|+++||+++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.++ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999963 246999999999999999999999999999999999999999999999999998887654 57
Q ss_pred ccceEEcccCcCCc-ccHHHHHhcCCC--CCCHHH----HHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 434 EQIGMVTQDTSLLH-RSIRDNILYGRP--DASECE----LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~----i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
+.|+|+||++.+|+ .|++||+.++.. ..+.++ +.++++.+ |+..........|||||
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v----------------gL~~~~~~~~~~LSgGq 145 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV----------------GLGDKHDSYPSNLSGGQ 145 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------------CCchhhhCChhhCCHHH
Confidence 89999999999995 599999987532 222222 22233333 44444455567999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
|||++|||||+.+|++|+||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 146 kQRV~IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~ 225 (343)
T TIGR02314 146 KQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTV 225 (343)
T ss_pred HHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCH
Confidence 9999999999999999999999999999999999999998753 7899999999999855 999999999999999999
Q ss_pred hHHhhc--CcHHHHHHH
Q psy13349 584 LDLLKK--NGLYSRLWR 598 (604)
Q Consensus 584 ~~l~~~--~~~y~~l~~ 598 (604)
+++... +..++++..
T Consensus 226 ~~v~~~p~~~~~~~~~~ 242 (343)
T TIGR02314 226 SEIFSHPKTPLAQKFIR 242 (343)
T ss_pred HHHHcCCCcHHHHHHHh
Confidence 998764 233444443
No 68
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=100.00 E-value=7.3e-49 Score=361.65 Aligned_cols=208 Identities=32% Similarity=0.465 Sum_probs=186.3
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ---ESLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~---~~~r~~i 436 (604)
|+|+||++.|++++++|+||||+|++||++-++||||||||||+|+|++...|++|+|.++|.|+..+.. .-+|++|
T Consensus 2 I~f~~V~k~Y~~g~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR~I 81 (223)
T COG2884 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRRQI 81 (223)
T ss_pred eeehhhhhhcCCCchhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhhee
Confidence 7899999999988779999999999999999999999999999999999999999999999999988764 4689999
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCC--CC----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRP--DA----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~--~~----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
|+|+||..|... |+.||+++.-. .. -.+++.++++.+|+.+-...+|. .|||||+||
T Consensus 82 GvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~----------------~LSGGEQQR 145 (223)
T COG2884 82 GVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS----------------QLSGGEQQR 145 (223)
T ss_pred eeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc----------------ccCchHHHH
Confidence 999999998865 99999998532 12 23566777788888777777775 799999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhc-CeEEEEeCCEEeEecCh
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~-d~i~vl~~G~iv~~g~~ 583 (604)
+|||||++.+|++||.||||.+|||++...|++.+.++. .|.||++.||+.+.+..+ -|++.+++|+++....+
T Consensus 146 vaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 146 VAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred HHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 999999999999999999999999999999999998876 599999999999999886 78999999999876543
No 69
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=100.00 E-value=2.5e-48 Score=398.32 Aligned_cols=212 Identities=30% Similarity=0.532 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.|+++||+++|++.. +++|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.|||.+++++++++ +.|++
T Consensus 3 ~i~l~~v~K~yg~~~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~iam 79 (338)
T COG3839 3 ELELKNVRKSFGSFE-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGIAM 79 (338)
T ss_pred EEEEeeeEEEcCCce-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCEEE
Confidence 589999999998644 999999999999999999999999999999999999999999999999999998876 68999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPDA--S----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~~--~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
|+|+..||+- ||+|||.|+-... + ++++.++++..+++..+++. ..+||||||||+|
T Consensus 80 VFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~----------------P~~LSGGQrQRVA 143 (338)
T COG3839 80 VFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRK----------------PLQLSGGQRQRVA 143 (338)
T ss_pred EeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcC----------------cccCChhhHHHHH
Confidence 9999999966 9999999985321 2 45556666666555555444 4589999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhh
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
||||++++|++++||||+|+||++....+...|+++.+ +.|+|+|||+-..+. .+|||.||++|+|.+.|++.|+.+
T Consensus 144 laRAlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~ 223 (338)
T COG3839 144 LARALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYE 223 (338)
T ss_pred HHHHHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhh
Confidence 99999999999999999999999999999888877543 689999999987654 589999999999999999999986
Q ss_pred c
Q psy13349 589 K 589 (604)
Q Consensus 589 ~ 589 (604)
+
T Consensus 224 ~ 224 (338)
T COG3839 224 R 224 (338)
T ss_pred C
Confidence 5
No 70
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.3e-48 Score=387.46 Aligned_cols=222 Identities=30% Similarity=0.471 Sum_probs=186.1
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ---ESLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~---~~~r~~i 436 (604)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.+
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~~i 79 (235)
T cd03261 1 IELRGLTKSFGG-RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRRRM 79 (235)
T ss_pred CeEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhcce
Confidence 478999999974 569999999999999999999999999999999999999999999999999887664 5678899
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+||||++.+|+. |++||+.++.. ..+.++..+. +.+.++.+ |+.........+||||||||++|
T Consensus 80 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrv~i 147 (235)
T cd03261 80 GMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREI-----VLEKLEAV-------GLRGAEDLYPAELSGGMKKRVAL 147 (235)
T ss_pred EEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHH-----HHHHHHHc-------CCchhhcCChhhCCHHHHHHHHH
Confidence 999999999976 99999987631 1232222211 11222222 45444455567899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||||+.+|+++||||||++||+.+.+.+.+.+++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 227 (235)
T cd03261 148 ARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS 227 (235)
T ss_pred HHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC
Confidence 9999999999999999999999999999999988753 7899999999998765 999999999999999999998876
Q ss_pred CcHHH
Q psy13349 590 NGLYS 594 (604)
Q Consensus 590 ~~~y~ 594 (604)
...|.
T Consensus 228 ~~~~~ 232 (235)
T cd03261 228 DDPLV 232 (235)
T ss_pred CChhh
Confidence 55554
No 71
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.8e-48 Score=380.19 Aligned_cols=211 Identities=31% Similarity=0.491 Sum_probs=184.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.|+++|++|+|.++ ++|+||||++++|++++|+||||||||||+|+++|+.+|++|+|.++|.+.+.... +..|||
T Consensus 4 ~i~v~nl~v~y~~~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~IgY 79 (254)
T COG1121 4 MIEVENLTVSYGNR-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRIGY 79 (254)
T ss_pred EEEEeeeEEEECCE-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeEEE
Confidence 58999999999866 79999999999999999999999999999999999999999999999988765432 468999
Q ss_pred EcccC---cCCcccHHHHHhcCCCCC----------CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 439 VTQDT---SLLHRSIRDNILYGRPDA----------SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 439 v~Q~~---~lf~~ti~eNi~~g~~~~----------~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
|||.. +-|+-||+|=+.+|+... +.+++.+|++.+++.++.. -.+ ..||||
T Consensus 80 VPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~------------r~i----~~LSGG 143 (254)
T COG1121 80 VPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRD------------RQI----GELSGG 143 (254)
T ss_pred cCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhC------------Ccc----cccCcH
Confidence 99965 358899999999985321 2478888888888876533 223 379999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
|+||+.|||||+.+|++|+|||||+|+|+.++..+.+.|+++++ ++||++|||+++.+.. +|+|+.| +++++..|++
T Consensus 144 Q~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~ 222 (254)
T COG1121 144 QKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPP 222 (254)
T ss_pred HHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccCh
Confidence 99999999999999999999999999999999999999998874 8999999999998766 8999999 6788899999
Q ss_pred hHHhhcC
Q psy13349 584 LDLLKKN 590 (604)
Q Consensus 584 ~~l~~~~ 590 (604)
++..+.+
T Consensus 223 ~~~~~~~ 229 (254)
T COG1121 223 EEVLTEE 229 (254)
T ss_pred hhccCHH
Confidence 9987653
No 72
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.4e-48 Score=369.77 Aligned_cols=214 Identities=34% Similarity=0.507 Sum_probs=187.2
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC---HHHHhcc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS---QESLREQ 435 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~---~~~~r~~ 435 (604)
.|+++||+.+||+++++|+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.++|.++..++ .+.+|++
T Consensus 3 ~i~~~nl~k~yp~~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r~~ 82 (258)
T COG3638 3 MIEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRRD 82 (258)
T ss_pred eEEEeeeeeecCCCceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHHHh
Confidence 5899999999998889999999999999999999999999999999999999999999999999998877 5678899
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCCCC-----------CCHHHH---HHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGRPD-----------ASECEL---FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~~~-----------~~~~~i---~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
|||++|++.|-+. |+.+|+..|+-. .+.++- .++++.+ |+-...-.+..
T Consensus 83 iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv----------------gi~~~A~qra~ 146 (258)
T COG3638 83 IGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV----------------GILDKAYQRAS 146 (258)
T ss_pred ceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc----------------CcHHHHHHHhc
Confidence 9999999999865 999999988632 233332 2333333 33333445667
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
+|||||+||++|||||.++|++++-|||+|+|||.+.++|++.|++.. .+.|+|+.-|.++.++. ||||+=|++|+|
T Consensus 147 ~LSGGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~i 226 (258)
T COG3638 147 TLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRI 226 (258)
T ss_pred cCCcchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcE
Confidence 999999999999999999999999999999999999999999998875 47999999999999876 899999999999
Q ss_pred eEecChhHHhh
Q psy13349 578 AEEGSHLDLLK 588 (604)
Q Consensus 578 v~~g~~~~l~~ 588 (604)
+..|+..|+-+
T Consensus 227 vfDg~~~el~~ 237 (258)
T COG3638 227 VFDGPASELTD 237 (258)
T ss_pred EEeCChhhhhH
Confidence 99999999654
No 73
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=100.00 E-value=3.5e-48 Score=354.25 Aligned_cols=211 Identities=35% Similarity=0.541 Sum_probs=188.9
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
+.+++|.|+|.... -..+++|++||++||+||||||||||+|+++||..|.+|+|.|||+|....++.+ +-++++
T Consensus 2 l~L~~V~~~y~~~~---~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~--RPVSml 76 (231)
T COG3840 2 LALDDVRFSYGHLP---MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAE--RPVSML 76 (231)
T ss_pred ccccceEEeeCcce---EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCccc--CChhhh
Confidence 56889999997422 3578999999999999999999999999999999999999999999998776644 579999
Q ss_pred cccCcCCcc-cHHHHHhcCC-CC-----CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGR-PD-----ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~-~~-----~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+||..||.- ||.+|+.+|. |. ...+++..++.++|+..+.++||. +||||||||+||
T Consensus 77 FQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~----------------~LSGGqRQRvAL 140 (231)
T COG3840 77 FQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG----------------ELSGGQRQRVAL 140 (231)
T ss_pred hhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc----------------ccCchHHHHHHH
Confidence 999999965 9999999994 43 245678888999999999999985 799999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||+|+|+.|||+||||+|+|||.-+.+....+.++. ++.|+++|||.++.+.. +|+++++++|+|..+|+.+++.+.
T Consensus 141 ARclvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 141 ARCLVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HHHHhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999999887765 47899999999998765 899999999999999999999876
Q ss_pred Cc
Q psy13349 590 NG 591 (604)
Q Consensus 590 ~~ 591 (604)
.+
T Consensus 221 ~~ 222 (231)
T COG3840 221 KA 222 (231)
T ss_pred CC
Confidence 54
No 74
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-47 Score=397.34 Aligned_cols=219 Identities=28% Similarity=0.485 Sum_probs=187.0
Q ss_pred ceEEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC------
Q psy13349 358 GKIFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV------ 427 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~------ 427 (604)
..|+++|++|+|++. .++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 359999999999742 3699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhccceEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-
Q psy13349 428 ----------SQESLREQIGMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD- 492 (604)
Q Consensus 428 ----------~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~- 492 (604)
+...+|+.++||+|+| .+|+.|++||+.++.. ..+.++.. +. ..++++.+ |++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~---~~--~~~~l~~~-------gL~~ 167 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAK---KL--AKFYLNKM-------GLDD 167 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHH---HH--HHHHHHHc-------CCCh
Confidence 3457889999999998 6899999999998732 23333322 11 22333333 665
Q ss_pred cccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH-hhcCeEE
Q psy13349 493 AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI-SAMDRLI 570 (604)
Q Consensus 493 t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~-~~~d~i~ 570 (604)
...++.+.+||||||||++|||||+++|++|||||||++||+.++..+.+.|.+.. +++|+|+|||+++.+ +.||+|+
T Consensus 168 ~~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~ 247 (320)
T PRK13631 168 SYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVI 247 (320)
T ss_pred hHhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEE
Confidence 56778889999999999999999999999999999999999999999999998764 589999999999976 5699999
Q ss_pred EEeCCEEeEecChhHHhh
Q psy13349 571 VLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 571 vl~~G~iv~~g~~~~l~~ 588 (604)
+|++|++++.|+++++.+
T Consensus 248 vl~~G~i~~~g~~~~~~~ 265 (320)
T PRK13631 248 VMDKGKILKTGTPYEIFT 265 (320)
T ss_pred EEECCEEEEeCCHHHHhc
Confidence 999999999999997654
No 75
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=4.3e-48 Score=375.42 Aligned_cols=197 Identities=31% Similarity=0.461 Sum_probs=169.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.+++++|+++|++ ..+|+|+||+|++||+++|+||||||||||+++++|+.+|++|+|.++|.++... ...++|
T Consensus 3 ~l~i~~v~~~f~~-~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~~~ 76 (248)
T COG1116 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDIGY 76 (248)
T ss_pred eEEEEeeEEEeCc-eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCEEE
Confidence 4889999999986 6799999999999999999999999999999999999999999999999987442 457999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCCC--C----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPDA--S----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~~--~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
|+|++.||+- |++||+.++-... + ++...+.++.+|+.+|-+ ....+||||||||+|
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~----------------~~P~qLSGGMrQRVa 140 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFED----------------KYPHQLSGGMRQRVA 140 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhh----------------cCccccChHHHHHHH
Confidence 9999999998 9999999986432 1 223444444455544444 444589999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHH-hhcCeEEEEeC--CEE
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDN--GCV 577 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~-~~~d~i~vl~~--G~i 577 (604)
|||||+.+|++|+||||++|||+.|...+++.+.++++ ++|+++|||+.+.+ ..+|||++|.+ |+|
T Consensus 141 iARAL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 141 IARALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred HHHHHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99999999999999999999999999999999988763 69999999999875 45899999999 445
No 76
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-47 Score=378.52 Aligned_cols=216 Identities=33% Similarity=0.557 Sum_probs=191.5
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC-CCCHHHHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS-NVSQESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~-~~~~~~~r~~i~ 437 (604)
.++++|++|+|+++.++|+|+||+|++||.++|+|+||||||||++++.|++.|++|+|.++|.++. +.+...+|+++|
T Consensus 3 ~i~~~~l~~~y~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~vG 82 (235)
T COG1122 3 MIEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQKVG 82 (235)
T ss_pred eEEEEEEEEEcCCCceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcceE
Confidence 4789999999987668999999999999999999999999999999999999999999999999988 477889999999
Q ss_pred EEcccC--cCCcccHHHHHhcCCCC--CCHHHHH----HHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 438 MVTQDT--SLLHRSIRDNILYGRPD--ASECELF----NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 438 ~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~i~----~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+|+|+| .+|..||.|.+.||..+ .+.+++. ++++.+ |+.........+||||||||
T Consensus 83 ~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~v----------------gl~~~~~r~p~~LSGGqkqR 146 (235)
T COG1122 83 LVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELV----------------GLEELLDRPPFNLSGGQKQR 146 (235)
T ss_pred EEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHc----------------CchhhccCCccccCCcceee
Confidence 999999 79999999999999653 4454443 333333 44444445567999999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHH
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 586 (604)
+|||.+|..+|++||||||||+||+...+.+++.++++.+ ++|+|++||+++.+.. |||+++|++|+++.+|+++|+
T Consensus 147 vaIA~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i 226 (235)
T COG1122 147 VAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEI 226 (235)
T ss_pred HHhhHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHH
Confidence 9999999999999999999999999999999999999874 4799999999998877 999999999999999999988
Q ss_pred hhcC
Q psy13349 587 LKKN 590 (604)
Q Consensus 587 ~~~~ 590 (604)
.+..
T Consensus 227 ~~~~ 230 (235)
T COG1122 227 FNDA 230 (235)
T ss_pred hhhh
Confidence 7654
No 77
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=100.00 E-value=1.4e-47 Score=394.78 Aligned_cols=214 Identities=31% Similarity=0.525 Sum_probs=189.0
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++||+++|+ +..+++|+||+|++||+++++|||||||||++++|+||.+|++|+|.+||+++.++++.. +.|+
T Consensus 4 ~~l~i~~v~k~yg-~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~k--R~ig 80 (352)
T COG3842 4 PALEIRNVSKSFG-DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPEK--RPIG 80 (352)
T ss_pred ceEEEEeeeeecC-CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhh--cccc
Confidence 4699999999998 567999999999999999999999999999999999999999999999999999987754 6899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCC---CCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRP---DASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~---~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+|+|+..||+- ||+|||.||-. ...+ +++.++++.+++.++-.+.| .+|||||+||
T Consensus 81 ~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p----------------~qLSGGQqQR 144 (352)
T COG3842 81 MVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKP----------------HQLSGGQQQR 144 (352)
T ss_pred eeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhCh----------------hhhChHHHHH
Confidence 99999999965 99999999954 1222 35666777777766655555 4899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhH-HhhcCeEEEEeCCEEeEecChhHH
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLST-ISAMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~-~~~~d~i~vl~~G~iv~~g~~~~l 586 (604)
+||||||..+|++|+||||.|+||.+-..++..-++++. .+.|.|+|||+-+. +..+|||.||++|+|.+.|+++|+
T Consensus 145 VALARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~ei 224 (352)
T COG3842 145 VALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEI 224 (352)
T ss_pred HHHHHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHH
Confidence 999999999999999999999999999999988887654 38999999999876 566899999999999999999999
Q ss_pred hhcC
Q psy13349 587 LKKN 590 (604)
Q Consensus 587 ~~~~ 590 (604)
..+.
T Consensus 225 Y~~P 228 (352)
T COG3842 225 YERP 228 (352)
T ss_pred hhCc
Confidence 8764
No 78
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=100.00 E-value=6.2e-47 Score=379.30 Aligned_cols=222 Identities=26% Similarity=0.467 Sum_probs=185.9
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hccceE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL-REQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~-r~~i~~ 438 (604)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (236)
T cd03219 1 LEVRGLTKRFGG-LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGIGR 79 (236)
T ss_pred CeeeeeEEEECC-EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCEEE
Confidence 468999999975 569999999999999999999999999999999999999999999999999988776554 567999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCCCCHHHH-------HHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPDASECEL-------FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i-------~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
+||++.+|++ |++||+.++........+ ........+.++++.+ |++...+....+||||||||+
T Consensus 80 v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrv 152 (236)
T cd03219 80 TFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV-------GLADLADRPAGELSYGQQRRL 152 (236)
T ss_pred EecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc-------CccchhhCChhhCCHHHHHHH
Confidence 9999999976 999999886421110000 0000111223344433 677667777889999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
+|||||+.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 153 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 232 (236)
T cd03219 153 EIARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRN 232 (236)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhcc
Confidence 99999999999999999999999999999999998876 67899999999999865 99999999999999999998865
Q ss_pred c
Q psy13349 589 K 589 (604)
Q Consensus 589 ~ 589 (604)
.
T Consensus 233 ~ 233 (236)
T cd03219 233 N 233 (236)
T ss_pred C
Confidence 3
No 79
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.7e-47 Score=387.58 Aligned_cols=215 Identities=30% Similarity=0.538 Sum_probs=185.4
Q ss_pred eEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
.++++||+++|++ ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 4899999999974 24699999999999999999999999999999999999999999999999999887777888999
Q ss_pred eEEcccCc--CCcccHHHHHhcCCCC--CCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 437 GMVTQDTS--LLHRSIRDNILYGRPD--ASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 437 ~~v~Q~~~--lf~~ti~eNi~~g~~~--~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
+||+|+|. ++..|++|||.++... .+.+ ++.++++.. |++........+|||||||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~----------------gL~~~~~~~~~~LSgGq~q 147 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV----------------GMQDFKEREPARLSGGQKQ 147 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC----------------CCHhHhhCCcccCCHHHHH
Confidence 99999983 5567999999987421 2322 223333333 4444444555789999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHH
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 586 (604)
|++|||||+.+|++|||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 148 rv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~ 227 (279)
T PRK13650 148 RVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL 227 (279)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999988753 7999999999999888999999999999999999987
Q ss_pred hhc
Q psy13349 587 LKK 589 (604)
Q Consensus 587 ~~~ 589 (604)
.+.
T Consensus 228 ~~~ 230 (279)
T PRK13650 228 FSR 230 (279)
T ss_pred HcC
Confidence 654
No 80
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=100.00 E-value=7.3e-47 Score=376.34 Aligned_cols=216 Identities=45% Similarity=0.752 Sum_probs=195.1
Q ss_pred CceEEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q psy13349 357 NGKIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE 434 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~ 434 (604)
.+.++++|++++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++
T Consensus 9 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 88 (226)
T cd03248 9 KGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYLHS 88 (226)
T ss_pred CceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHHHh
Confidence 4679999999999752 46999999999999999999999999999999999999999999999999988777777888
Q ss_pred cceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 435 QIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 435 ~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
.++|++|++.+|+.|++||+.++......+++.+.....+++++++.+|. |+++.+.+...+||||||||++|||
T Consensus 89 ~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----gl~~~~~~~~~~LSgG~~qrv~lar 163 (226)
T cd03248 89 KVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELAS-----GYDTEVGEKGSQLSGGQKQRVAIAR 163 (226)
T ss_pred hEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccc-----cccchhhcCCCcCCHHHHHHHHHHH
Confidence 99999999999999999999987554444455555555677888888887 8999899999999999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEE
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCV 577 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i 577 (604)
||+++|+++||||||++||+.+...+.+.+++..+++|+|++||+++.+..||+|++|++|++
T Consensus 164 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 164 ALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999987767899999999999988999999999974
No 81
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.7e-47 Score=397.75 Aligned_cols=213 Identities=30% Similarity=0.499 Sum_probs=183.1
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|+++.|+++.++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.+||.++.+.++. ++.|+|
T Consensus 3 ~l~i~~l~~~~~~~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig~ 80 (356)
T PRK11650 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDIAM 80 (356)
T ss_pred EEEEEeEEEEeCCCCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 489999999995446799999999999999999999999999999999999999999999999999877654 468999
Q ss_pred EcccCcCCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP--DASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~--~~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
|+|++.+|+. |++||+.++.. ..+.. ++.++++.. |++........+||||||||+|
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~----------------gL~~~~~~~~~~LSgGq~QRva 144 (356)
T PRK11650 81 VFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARIL----------------ELEPLLDRKPRELSGGQRQRVA 144 (356)
T ss_pred EeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc----------------CChhHhhCChhhCCHHHHHHHH
Confidence 9999999965 99999998743 12222 233333333 4444444555689999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhh
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
|||||+++|++|+||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++|+.+
T Consensus 145 lARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~ 224 (356)
T PRK11650 145 MGRAIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYE 224 (356)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999988753 789999999998764 599999999999999999999977
Q ss_pred c
Q psy13349 589 K 589 (604)
Q Consensus 589 ~ 589 (604)
+
T Consensus 225 ~ 225 (356)
T PRK11650 225 K 225 (356)
T ss_pred C
Confidence 5
No 82
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.3e-47 Score=380.74 Aligned_cols=218 Identities=27% Similarity=0.389 Sum_probs=185.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHHhcc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD---IKYGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+.+...+|+.
T Consensus 2 ~~~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~~~ 80 (246)
T PRK14269 2 IAKTTNLNLFYGK-KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRKN 80 (246)
T ss_pred ceeeeeeEEEECC-EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHhhh
Confidence 3789999999974 579999999999999999999999999999999999984 689999999999988877788899
Q ss_pred ceEEcccCcCCcccHHHHHhcCCC--CC------CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHH
Q psy13349 436 IGMVTQDTSLLHRSIRDNILYGRP--DA------SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQR 507 (604)
Q Consensus 436 i~~v~Q~~~lf~~ti~eNi~~g~~--~~------~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~ 507 (604)
++|+||++.+|+.|++||+.++.. .. .++++.++++..++.+++ .+...+.+.+||||||
T Consensus 81 i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------~~~~~~~~~~LS~G~~ 148 (246)
T PRK14269 81 VGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEV------------KDKLKQNALALSGGQQ 148 (246)
T ss_pred EEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhh------------hHHhcCCcccCCHHHH
Confidence 999999999999999999987631 00 111223333333332221 1234556789999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHH
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l 586 (604)
||++|||||+++|+++||||||++||+.+...+.+.|.+..+++|+|+|||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 228 (246)
T PRK14269 149 QRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEF 228 (246)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHH
Confidence 999999999999999999999999999999999999988777899999999999875 5899999999999999999998
Q ss_pred hhc
Q psy13349 587 LKK 589 (604)
Q Consensus 587 ~~~ 589 (604)
.+.
T Consensus 229 ~~~ 231 (246)
T PRK14269 229 FEN 231 (246)
T ss_pred HhC
Confidence 764
No 83
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=100.00 E-value=3.9e-47 Score=378.51 Aligned_cols=210 Identities=33% Similarity=0.495 Sum_probs=178.3
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCccEEEECCEeCCCCC--HHHH
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY-----DIKYGEILIDGQNISNVS--QESL 432 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~I~i~g~~~~~~~--~~~~ 432 (604)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...+ ...+
T Consensus 1 i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (227)
T cd03260 1 IELRDLNVYYGD-KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVLEL 79 (227)
T ss_pred CEEEEEEEEcCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHHHH
Confidence 478999999975 47999999999999999999999999999999999999 999999999999987766 5667
Q ss_pred hccceEEcccCcCCcccHHHHHhcCCCC--C-C----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccC--CCCCC
Q psy13349 433 REQIGMVTQDTSLLHRSIRDNILYGRPD--A-S----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEH--GIKLS 503 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~--g~~LS 503 (604)
+++++|++|++.+|+.|++||+.++... . . ++++.++++.. |++...... +.+||
T Consensus 80 ~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~~~LS 143 (227)
T cd03260 80 RRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKA----------------ALWDEVKDRLHALGLS 143 (227)
T ss_pred HhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHc----------------CCChHHhccCCcccCC
Confidence 8899999999999977999999875321 1 1 11222222222 443333333 47899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
||||||++|||||+++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 144 gG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 144 GGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999999999999998865589999999999876 599999999999999998
Q ss_pred hhHH
Q psy13349 583 HLDL 586 (604)
Q Consensus 583 ~~~l 586 (604)
++++
T Consensus 224 ~~~~ 227 (227)
T cd03260 224 TEQI 227 (227)
T ss_pred cccC
Confidence 8764
No 84
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=8.9e-47 Score=379.31 Aligned_cols=221 Identities=32% Similarity=0.494 Sum_probs=182.5
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC---HHHHhccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS---QESLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~---~~~~r~~i 436 (604)
++++||+++|++++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 80 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRRQI 80 (241)
T ss_pred CEEeeEEEecCCccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHhcc
Confidence 468999999975357999999999999999999999999999999999999999999999999988776 45678899
Q ss_pred eEEcccCcCCc-ccHHHHHhcCCCCCCH--HHHH---HHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 437 GMVTQDTSLLH-RSIRDNILYGRPDASE--CELF---NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 437 ~~v~Q~~~lf~-~ti~eNi~~g~~~~~~--~~i~---~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
+|+||++.+|. .|++||+.++...... ..+. .......+.+.++.+ |+.........+||||||||+
T Consensus 81 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv 153 (241)
T cd03256 81 GMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV-------GLLDKAYQRADQLSGGQQQRV 153 (241)
T ss_pred EEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc-------CChhhhCCCcccCCHHHHHHH
Confidence 99999999886 5999999875321100 0000 000001112222222 565556667789999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+|||||+.+|+++||||||++||+.+...+.+.|++.. .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 154 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 233 (241)
T cd03256 154 AIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELT 233 (241)
T ss_pred HHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhh
Confidence 99999999999999999999999999999999998875 3789999999999987 59999999999999999999874
No 85
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.3e-46 Score=384.90 Aligned_cols=213 Identities=29% Similarity=0.426 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|+++.|++++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 4 ~l~~~~l~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 83 (274)
T PRK13647 4 IIEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKVGL 83 (274)
T ss_pred eEEEEEEEEEeCCCCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhEEE
Confidence 48999999999754579999999999999999999999999999999999999999999999999988887888889999
Q ss_pred EcccC--cCCcccHHHHHhcCCC--CCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 439 VTQDT--SLLHRSIRDNILYGRP--DASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 439 v~Q~~--~lf~~ti~eNi~~g~~--~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
++|+| .+|..|++||+.++.. ..+. +++.++++..+ +..........||||||||+
T Consensus 84 v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~----------------L~~~~~~~~~~LSgG~~qrv 147 (274)
T PRK13647 84 VFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVR----------------MWDFRDKPPYHLSYGQKKRV 147 (274)
T ss_pred EecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCC----------------CHHHhcCChhhCCHHHHHHH
Confidence 99998 5788899999998632 1222 22333333333 33333344458999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+ +.||||++|++|++++.|+++++.
T Consensus 148 ~laraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 148 AIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred HHHHHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 99999999999999999999999999999999998875 479999999999987 459999999999999999987653
No 86
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=100.00 E-value=1.7e-46 Score=377.80 Aligned_cols=221 Identities=29% Similarity=0.461 Sum_probs=181.5
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ---ESLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~---~~~r~~i 436 (604)
++++||+++|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.+
T Consensus 2 l~~~~l~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (243)
T TIGR02315 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRRRI 81 (243)
T ss_pred eEEEeeeeecCCCcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHhhe
Confidence 6899999999734579999999999999999999999999999999999999999999999999877654 3467889
Q ss_pred eEEcccCcCCc-ccHHHHHhcCCCCCC--HHHHH---HHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 437 GMVTQDTSLLH-RSIRDNILYGRPDAS--ECELF---NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 437 ~~v~Q~~~lf~-~ti~eNi~~g~~~~~--~~~i~---~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
+|+||++.+|+ .|++||+.++..... ..... .......+.+.++.+ |++........+||||||||+
T Consensus 82 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrv 154 (243)
T TIGR02315 82 GMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV-------GLADKAYQRADQLSGGQQQRV 154 (243)
T ss_pred EEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc-------CcHhhhcCCcccCCHHHHHHH
Confidence 99999999886 599999987632110 00000 000011122223222 555556667789999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+|||||+.+|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+. .||++++|++|++++.|+++++.
T Consensus 155 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 155 AIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 99999999999999999999999999999999998874 3789999999999875 59999999999999999999873
No 87
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=100.00 E-value=7.6e-47 Score=373.58 Aligned_cols=202 Identities=34% Similarity=0.520 Sum_probs=170.6
Q ss_pred EEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhcc
Q psy13349 360 IFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---SLREQ 435 (604)
Q Consensus 360 i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~---~~r~~ 435 (604)
++++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.
T Consensus 2 l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (216)
T TIGR00960 2 IRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRRH 81 (216)
T ss_pred eEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHHh
Confidence 6899999999753 4699999999999999999999999999999999999999999999999998766543 46789
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGRP--DAS----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
++|++|++.+|.. |++||+.++.. ... ++++.++++.. |+.........+|||||||
T Consensus 82 i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LSgG~~q 145 (216)
T TIGR00960 82 IGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKV----------------GLEGKAHALPMQLSGGEQQ 145 (216)
T ss_pred ceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------------CChhhhhCChhhCCHHHHH
Confidence 9999999998864 99999987521 111 22233333333 4443444455689999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
|++|||||+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 146 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 146 RVAIARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999999999998875 47899999999998875 899999999975
No 88
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-46 Score=391.96 Aligned_cols=218 Identities=34% Similarity=0.538 Sum_probs=185.3
Q ss_pred EEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---Hh
Q psy13349 360 IFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES---LR 433 (604)
Q Consensus 360 i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~---~r 433 (604)
|+++||+++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 789999999972 357999999999999999999999999999999999999999999999999998877543 47
Q ss_pred ccceEEcccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 434 EQIGMVTQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
++|+||||++.+|+ .|++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||+
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gL~~~~~~~~~~LSgGq~qRv 149 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKA-----RVTELLELV-------GLSDKADRYPAQLSGGQKQRV 149 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CCchhhhCChhhCCHHHHHHH
Confidence 89999999999986 599999987532 122222211 122333322 555555666779999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 150 ~lAraL~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~ 229 (343)
T PRK11153 150 AIARALASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVF 229 (343)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988753 7899999999998765 9999999999999999999997
Q ss_pred hc
Q psy13349 588 KK 589 (604)
Q Consensus 588 ~~ 589 (604)
+.
T Consensus 230 ~~ 231 (343)
T PRK11153 230 SH 231 (343)
T ss_pred hC
Confidence 65
No 89
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=100.00 E-value=1.7e-46 Score=372.07 Aligned_cols=214 Identities=26% Similarity=0.482 Sum_probs=178.7
Q ss_pred EEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 360 IFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
++++||++.|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLGY 79 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEEE
Confidence 4789999999752 5799999999999999999999999999999999999999999999999998654 3567788999
Q ss_pred EcccCcCC-cccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLL-HRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf-~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
++|++.+| ..|++||+.++.. ..+.++..+ .++++++.+ |+.........+||||||||++||||
T Consensus 80 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 80 CPQFDALFDELTVREHLRFYARLKGLPKSEIKE-----EVELLLRVL-------GLTDKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred ecCcCCccccCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 99999998 5699999987421 112211111 112222222 44333444556899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHH
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 586 (604)
|+.+|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999988777999999999998865 899999999999999998875
No 90
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=100.00 E-value=2.5e-46 Score=371.43 Aligned_cols=217 Identities=26% Similarity=0.433 Sum_probs=181.3
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hccceE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL-REQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~-r~~i~~ 438 (604)
++++||+++|++ +++++|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (222)
T cd03224 1 LEVENLNAGYGK-SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGIGY 79 (222)
T ss_pred CEEeeEEeecCC-eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCeEE
Confidence 478999999975 479999999999999999999999999999999999999999999999999987776554 678999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
+||++.+|+. |++||+.++.+.....+..+ ...+.++.++ +++........+||||||||++|||||+
T Consensus 80 ~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~-----~~~~~l~~~~------~l~~~~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 80 VPEGRRIFPELTVEENLLLGAYARRRAKRKA-----RLERVYELFP------RLKERRKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred eccccccCCCCcHHHHHHHHhhhcCchhHHH-----HHHHHHHHHH------hhhhhhhCchhhCCHHHHHHHHHHHHHh
Confidence 9999999986 99999988643221111111 1122222221 2333445566789999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
++|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 9999999999999999999999999998875 57899999999998655 99999999999999999888754
No 91
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.7e-46 Score=374.07 Aligned_cols=222 Identities=34% Similarity=0.499 Sum_probs=188.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i~~ 81 (241)
T PRK14250 3 EIEFKEVSYSSFG-KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKIGM 81 (241)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcEEE
Confidence 4899999999975 569999999999999999999999999999999999999999999999999987777788889999
Q ss_pred EcccCcCCcccHHHHHhcCCCCCC--HHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHRSIRDNILYGRPDAS--ECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi~~g~~~~~--~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq~QrialARa 515 (604)
++|++.+|+.|++||+.++..... ++++. ++++.+ |++ .........||||||||++||||
T Consensus 82 ~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~---------~~l~~~-------~l~~~~~~~~~~~LS~G~~qrl~la~a 145 (241)
T PRK14250 82 VFQQPHLFEGTVKDNIEYGPMLKGEKNVDVE---------YYLSIV-------GLNKEYATRDVKNLSGGEAQRVSIART 145 (241)
T ss_pred EecCchhchhhHHHHHhcchhhcCcHHHHHH---------HHHHHc-------CCCHHHhhCCcccCCHHHHHHHHHHHH
Confidence 999999998999999987642111 11222 222222 443 23455677999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcC-c
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKN-G 591 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~-~ 591 (604)
++++|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|+++++.... .
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 225 (241)
T PRK14250 146 LANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQN 225 (241)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCc
Confidence 999999999999999999999999999998875 37999999999998764 9999999999999999999988643 2
Q ss_pred HHHHHH
Q psy13349 592 LYSRLW 597 (604)
Q Consensus 592 ~y~~l~ 597 (604)
.|.+.|
T Consensus 226 ~~~~~~ 231 (241)
T PRK14250 226 EVTKLF 231 (241)
T ss_pred HHHHHH
Confidence 455544
No 92
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.4e-46 Score=375.78 Aligned_cols=216 Identities=28% Similarity=0.459 Sum_probs=180.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~ 78 (239)
T cd03296 2 SIEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVGF 78 (239)
T ss_pred EEEEEeEEEEECC-EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceEE
Confidence 3789999999975 579999999999999999999999999999999999999999999999999876543 3578999
Q ss_pred EcccCcCCc-ccHHHHHhcCCCCC------CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 439 VTQDTSLLH-RSIRDNILYGRPDA------SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 439 v~Q~~~lf~-~ti~eNi~~g~~~~------~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
++|++.+|+ .|++||+.++.... +.++..+ .+.+.++.+ |++........+||||||||++
T Consensus 79 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 79 VFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRA-----KVHELLKLV-------QLDWLADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHH-----HHHHHHHHc-------CChhhhhcChhhCCHHHHHHHH
Confidence 999999986 59999998763211 1111110 112222222 5555555666789999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhh
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
|||||+.+|+++||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999988753 789999999999765 499999999999999999999876
Q ss_pred c
Q psy13349 589 K 589 (604)
Q Consensus 589 ~ 589 (604)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
No 93
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.4e-46 Score=383.70 Aligned_cols=216 Identities=31% Similarity=0.526 Sum_probs=185.9
Q ss_pred eEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 359 KIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
.++++||++.|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 5 ~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i~ 84 (279)
T PRK13635 5 IIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQVG 84 (279)
T ss_pred eEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhheE
Confidence 4899999999975 356999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEcccC--cCCcccHHHHHhcCCCC--CCHHH----HHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 438 MVTQDT--SLLHRSIRDNILYGRPD--ASECE----LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 438 ~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~----i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
|++|++ .+++.|++||+.++... .+.++ +.++++.. |++.........||||||||
T Consensus 85 ~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~----------------gL~~~~~~~~~~LS~G~~qr 148 (279)
T PRK13635 85 MVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQV----------------GMEDFLNREPHRLSGGQKQR 148 (279)
T ss_pred EEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHc----------------CChhhhhCCcccCCHHHHHH
Confidence 999998 45677999999886321 22222 23333333 44444445556899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHh
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++.
T Consensus 149 v~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 228 (279)
T PRK13635 149 VAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIF 228 (279)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHh
Confidence 9999999999999999999999999999999999988763 78999999999999889999999999999999998887
Q ss_pred hcC
Q psy13349 588 KKN 590 (604)
Q Consensus 588 ~~~ 590 (604)
+..
T Consensus 229 ~~~ 231 (279)
T PRK13635 229 KSG 231 (279)
T ss_pred cCH
Confidence 643
No 94
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.2e-46 Score=383.75 Aligned_cols=219 Identities=29% Similarity=0.445 Sum_probs=184.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS--NVSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~--~~~~~~~r~~i 436 (604)
.++++||+++|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.+
T Consensus 5 ~l~~~~l~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~i 84 (283)
T PRK13636 5 ILKVEELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRESV 84 (283)
T ss_pred eEEEEeEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHhhE
Confidence 5899999999975567999999999999999999999999999999999999999999999999984 33456788999
Q ss_pred eEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 437 GMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 437 ~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+|+||++ .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |+.........+||||||||++|
T Consensus 85 g~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~-------gL~~~~~~~~~~LS~G~~qrl~l 152 (283)
T PRK13636 85 GMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKR-----VDNALKRT-------GIEHLKDKPTHCLSFGQKKRVAI 152 (283)
T ss_pred EEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHC-------CChhhhhCCcccCCHHHHHHHHH
Confidence 9999998 5788899999987532 1232222111 11122221 55555556678999999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||||+.+|++|||||||++||+.+...+.+.++++.+ ++|++++||+++.+. .|||+++|++|++++.|+++++.+.
T Consensus 153 araL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 153 AGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred HHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999988753 799999999999986 5999999999999999999998764
No 95
>PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.4e-46 Score=382.11 Aligned_cols=217 Identities=31% Similarity=0.525 Sum_probs=183.7
Q ss_pred EEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC--HHHHh
Q psy13349 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS--QESLR 433 (604)
Q Consensus 360 i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~--~~~~r 433 (604)
++++||+++|++. +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 7899999999752 46999999999999999999999999999999999999999999999999997654 35678
Q ss_pred ccceEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc--cccccCCCCCChhHH
Q psy13349 434 EQIGMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD--AHVGEHGIKLSGGQR 507 (604)
Q Consensus 434 ~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~--t~v~e~g~~LSgGq~ 507 (604)
+.++||||+| .+|+.|++||+.++.. ..+.++..+.+ .+.++.+ |+. +........||||||
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~-------gL~~~~~~~~~~~~LSgGq~ 150 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRV-----KRAMNIV-------GLDYEDYKDKSPFELSGGQK 150 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHH-----HHHHHHc-------CCCchhhccCCcccCCHHHH
Confidence 8999999998 5788899999998632 23333332211 1122211 554 445666789999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChh
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~ 584 (604)
||++|||||+.+|++|||||||++||+.+...+.+.++++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++
T Consensus 151 qrv~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~ 230 (287)
T PRK13637 151 RRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPR 230 (287)
T ss_pred HHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999988753 789999999999875 59999999999999999999
Q ss_pred HHhh
Q psy13349 585 DLLK 588 (604)
Q Consensus 585 ~l~~ 588 (604)
++.+
T Consensus 231 ~~~~ 234 (287)
T PRK13637 231 EVFK 234 (287)
T ss_pred HHHh
Confidence 8865
No 96
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-46 Score=378.81 Aligned_cols=219 Identities=31% Similarity=0.437 Sum_probs=183.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~--~~~~ 430 (604)
..++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+..
T Consensus 5 ~~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (253)
T PRK14242 5 PKMEARGLSFFYGD-FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83 (253)
T ss_pred cEEEEeeeEEEECC-eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCHH
Confidence 35999999999975 469999999999999999999999999999999999974 589999999999864 3445
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRP--DA-S----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~-~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.+|+.++|++|++.+|+.|++||+.++.. .. . ++++.++++..++.+++ .+..++...+||
T Consensus 84 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------~~~~~~~~~~LS 151 (253)
T PRK14242 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEV------------KDRLHESALGLS 151 (253)
T ss_pred HHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhh------------hHHhhCCcccCC
Confidence 67889999999999998899999987521 11 1 12233333333332211 223456677999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
||||||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+
T Consensus 152 gGq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~ 231 (253)
T PRK14242 152 GGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGP 231 (253)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998876789999999999885 599999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
++++.+.
T Consensus 232 ~~~~~~~ 238 (253)
T PRK14242 232 TEQIFTR 238 (253)
T ss_pred HHHHHcC
Confidence 9998764
No 97
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.5e-46 Score=393.62 Aligned_cols=212 Identities=28% Similarity=0.463 Sum_probs=183.1
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++ .+++++|
T Consensus 6 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~ 82 (351)
T PRK11432 6 FVVLKNITKRFGS-NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI--QQRDICM 82 (351)
T ss_pred EEEEEeEEEEECC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEE
Confidence 5899999999974 569999999999999999999999999999999999999999999999999987654 3578999
Q ss_pred EcccCcCCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP--DASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~--~~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
|+|++.+|+. |++||+.|+.. ..+.+ ++.++++.. |+..........||||||||+|
T Consensus 83 vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~----------------gl~~~~~r~~~~LSgGq~QRVa 146 (351)
T PRK11432 83 VFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELV----------------DLAGFEDRYVDQISGGQQQRVA 146 (351)
T ss_pred EeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHc----------------CCchhhcCChhhCCHHHHHHHH
Confidence 9999999965 99999998742 12222 222333333 4444445556789999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHhh
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
|||||+++|++|+||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+.+.+ +.||+|++|++|++++.|+++++.+
T Consensus 147 LARaL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~ 226 (351)
T PRK11432 147 LARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYR 226 (351)
T ss_pred HHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988753 79999999999986 5599999999999999999999976
Q ss_pred c
Q psy13349 589 K 589 (604)
Q Consensus 589 ~ 589 (604)
+
T Consensus 227 ~ 227 (351)
T PRK11432 227 Q 227 (351)
T ss_pred C
Confidence 5
No 98
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.5e-46 Score=370.58 Aligned_cols=207 Identities=34% Similarity=0.547 Sum_probs=172.8
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|+
T Consensus 1 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~~v 77 (213)
T cd03259 1 LELKGLSKTYGS-VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIGMV 77 (213)
T ss_pred CeeeeeEEEeCC-eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEEEE
Confidence 478999999975 579999999999999999999999999999999999999999999999999876543 46789999
Q ss_pred cccCcCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLH-RSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~-~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
||++.+|. .|++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrl~la~al 145 (213)
T cd03259 78 FQDYALFPHLTVAENIAFGLKLRGVPKAEIRA-----RVRELLELV-------GLEGLLNRYPHELSGGQQQRVALARAL 145 (213)
T ss_pred cCchhhccCCcHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc-------CChhhhhcChhhCCHHHHHHHHHHHHH
Confidence 99999886 5999999875321 12111111 112223222 555555566678999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
+++|+++||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 146 AREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998864 37899999999998755 8999999999998865
No 99
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=7.7e-46 Score=363.99 Aligned_cols=203 Identities=39% Similarity=0.628 Sum_probs=180.2
Q ss_pred CceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q psy13349 357 NGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
.+.++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+..++|+.
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 4 HGEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CCeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 3569999999999753 479999999999999999999999999999999999999999999999999988888888899
Q ss_pred ceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 436 IGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 436 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
++|++|++.+|++|++||+.+..+ .+++++.++++ +++....|||||+||++||||
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~-----------------------~~~~~~~LS~G~~qrv~lara 139 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR-----------------------VSEGGLNLSQGQRQLLCLARA 139 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh-----------------------ccCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999987542 33333322221 234567899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecCh
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~ 583 (604)
++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 140 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 140 LLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 99999999999999999999999999999988778999999999999888999999999999998863
No 100
>PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=9.1e-46 Score=380.96 Aligned_cols=219 Identities=28% Similarity=0.503 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHH
Q psy13349 359 KIFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV----SQE 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~----~~~ 430 (604)
.++++||+++|+++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999742 3699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhccceEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChh
Q psy13349 431 SLREQIGMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGG 505 (604)
Q Consensus 431 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgG 505 (604)
.+|+.|+||||+| .+|+.|++||+.++.. ..+.++..+. +.+.+..+ |+++ .......+||||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~-------gL~~~~~~~~~~~LSgG 149 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL-------GFSRDVMSQSPFQMSGG 149 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc-------CCChhhhhCCcccCCHH
Confidence 7888999999997 5888899999998632 1233332221 12333322 7763 456678899999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecC
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
||||++|||||+.+|+++||||||++||+.+...+.+.++++. .++|+|+|||+++.+. .||||++|++|++++.|+
T Consensus 150 q~qrv~laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 150 QMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998875 4799999999999875 689999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
++++.+.
T Consensus 230 ~~~~~~~ 236 (286)
T PRK13646 230 PKELFKD 236 (286)
T ss_pred HHHHHhC
Confidence 9988764
No 101
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1e-45 Score=374.67 Aligned_cols=219 Identities=32% Similarity=0.444 Sum_probs=183.3
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~--~~~~ 430 (604)
..++++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (254)
T PRK14273 6 AIIETENLNLFYTD-FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDIL 84 (254)
T ss_pred ceEEEeeeEEEeCC-ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccHH
Confidence 36899999999975 5699999999999999999999999999999999999997 48999999998853 3445
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCC---CC----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPD---AS----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~---~~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.+|+.++|++|++.+|+.|++||+.++... .+ ++++.++++..++.+.+ ++ .+ .....+||
T Consensus 85 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~-----~~----~~~~~~LS 152 (254)
T PRK14273 85 ELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KD-----KL----NTNALSLS 152 (254)
T ss_pred HHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HH-----HH----hCCcccCC
Confidence 678899999999999989999999886321 11 12233333333332111 11 22 33567899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
||||||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||||++|++|++++.|+
T Consensus 153 gG~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 232 (254)
T PRK14273 153 GGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESS 232 (254)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877799999999999875 499999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
++++.+.
T Consensus 233 ~~~~~~~ 239 (254)
T PRK14273 233 TDELFFN 239 (254)
T ss_pred HHHHHhC
Confidence 9999754
No 102
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=4.7e-46 Score=372.22 Aligned_cols=217 Identities=33% Similarity=0.522 Sum_probs=182.3
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHh
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---SLR 433 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~---~~r 433 (604)
++++|++++|++. .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 6899999999753 2799999999999999999999999999999999999999999999999998876543 347
Q ss_pred ccceEEcccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 434 EQIGMVTQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
+.++|+||++.+|. .|++||+.++.. ..+..+.. ..+++.++.+ |++........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv 149 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIE-----ERVLELLELV-------GLEDKADAYPAQLSGGQKQRV 149 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHC-------CChhhhhcChhhCCHHHHHHH
Confidence 88999999999997 599999987532 11111111 1122333332 555555566679999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-K-GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~-~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+|||||+++|+++||||||++||+.+...+.+.|++.. + ++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 150 ~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (233)
T cd03258 150 GIARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVF 229 (233)
T ss_pred HHHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 99999999999999999999999999999999998875 3 7899999999998765 8999999999999999998876
Q ss_pred h
Q psy13349 588 K 588 (604)
Q Consensus 588 ~ 588 (604)
+
T Consensus 230 ~ 230 (233)
T cd03258 230 A 230 (233)
T ss_pred c
Confidence 5
No 103
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=5.6e-46 Score=373.78 Aligned_cols=218 Identities=32% Similarity=0.519 Sum_probs=184.6
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++||+++|++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 l~~~~l~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIGYV 80 (242)
T ss_pred CEEEEEEEEeCCcceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceEEE
Confidence 46899999997534699999999999999999999999999999999999999999999999999887777888899999
Q ss_pred cccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc--ccccCCCCCChhHHHHHHHHH
Q psy13349 440 TQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDA--HVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 440 ~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t--~v~e~g~~LSgGq~QrialAR 514 (604)
||++.+|+ .|++||+.++.. ..+.++. ...+.+.++.+ |+.. ...+...+||||||||++|||
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~l-------~l~~~~~~~~~~~~LS~G~~qrv~lar 148 (242)
T cd03295 81 IQQIGLFPHMTVEENIALVPKLLKWPKEKI-----RERADELLALV-------GLDPAEFADRYPHELSGGQQQRVGVAR 148 (242)
T ss_pred ccCccccCCCcHHHHHHHHHHHcCCCHHHH-----HHHHHHHHHHc-------CCCcHHHHhcChhhCCHHHHHHHHHHH
Confidence 99999986 599999987531 1111111 11123333332 5553 456667899999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|++++|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 149 al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 149 ALAADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999999988753 799999999999765 5899999999999999999998754
No 104
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=100.00 E-value=9e-46 Score=370.90 Aligned_cols=225 Identities=31% Similarity=0.502 Sum_probs=188.5
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ++.++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~~~ 79 (236)
T TIGR03864 2 LEVAGLSFAYGA-RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLGVV 79 (236)
T ss_pred EEEEeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEEEe
Confidence 689999999975 57999999999999999999999999999999999999999999999999987765543 4589999
Q ss_pred cccCcCC-cccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLL-HRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf-~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+|++.++ ..|++||+.++.. ..+.++..+ .+.++++.+ |++........+|||||+||++||||+
T Consensus 80 ~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~LS~G~~qrl~laral 147 (236)
T TIGR03864 80 FQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL-------GLAERADDKVRELNGGHRRRVEIARAL 147 (236)
T ss_pred CCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CChhhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999885 5699999987532 122221111 123333332 666667777789999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcC--cH
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKN--GL 592 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~--~~ 592 (604)
+++|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.. ..
T Consensus 148 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 227 (236)
T TIGR03864 148 LHRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGALGGAD 227 (236)
T ss_pred hcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHHcCccc
Confidence 99999999999999999999999999998875 378999999999998889999999999999999999988763 23
Q ss_pred HHHHHH
Q psy13349 593 YSRLWR 598 (604)
Q Consensus 593 y~~l~~ 598 (604)
+.+.|.
T Consensus 228 ~~~~~~ 233 (236)
T TIGR03864 228 LEAAFL 233 (236)
T ss_pred HHHHHH
Confidence 555543
No 105
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=100.00 E-value=4.4e-46 Score=392.30 Aligned_cols=216 Identities=26% Similarity=0.476 Sum_probs=186.2
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.++. ++.++|
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~ig~ 80 (353)
T TIGR03265 4 YLSIDNIRKRFGA-FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDYGI 80 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCEEE
Confidence 4899999999975 5699999999999999999999999999999999999999999999999999876653 568999
Q ss_pred EcccCcCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLH-RSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|+|++.+|+ .|++||+.|+... .+.++.. ..+++.++.+ |++........+||||||||+|||||
T Consensus 81 v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~-----~~~~~~l~~l-------~L~~~~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 81 VFQSYALFPNLTVADNIAYGLKNRGMGRAEVA-----ERVAELLDLV-------GLPGSERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred EeCCcccCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc-------CCCchhhCChhhCCHHHHHHHHHHHH
Confidence 999999996 5999999987421 2222221 1223333333 66666777788999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|+++|++++||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++|+.++
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~ 225 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRH 225 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988753 78999999999986 45999999999999999999999875
No 106
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=100.00 E-value=7.6e-46 Score=394.74 Aligned_cols=221 Identities=28% Similarity=0.472 Sum_probs=189.8
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.+++..+++++++|
T Consensus 3 ~L~~~nls~~y~~-~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~ig~ 81 (402)
T PRK09536 3 MIDVSDLSVEFGD-TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRVAS 81 (402)
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcceEE
Confidence 4889999999975 579999999999999999999999999999999999999999999999999999888889999999
Q ss_pred EcccCcC-CcccHHHHHhcCCCCC----------CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHH
Q psy13349 439 VTQDTSL-LHRSIRDNILYGRPDA----------SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQR 507 (604)
Q Consensus 439 v~Q~~~l-f~~ti~eNi~~g~~~~----------~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~ 507 (604)
|+|++.+ |+.|++||+.++.... +++++.++++.. |+.........+||||||
T Consensus 82 v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~v----------------gl~~~~~~~~~~LSgGer 145 (402)
T PRK09536 82 VPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERT----------------GVAQFADRPVTSLSGGER 145 (402)
T ss_pred EccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHc----------------CCchhhcCChhhCCHHHH
Confidence 9999987 5779999999875211 112233333333 343334445678999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhH
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~ 585 (604)
||++|||||+++|++|||||||++||+.++..+++.|+++. +++|+|++||+++.+. .|||+++|++|++++.|+++|
T Consensus 146 QRv~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~e 225 (402)
T PRK09536 146 QRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPAD 225 (402)
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHH
Confidence 99999999999999999999999999999999999999876 4789999999999985 599999999999999999999
Q ss_pred HhhcCcHHHHHH
Q psy13349 586 LLKKNGLYSRLW 597 (604)
Q Consensus 586 l~~~~~~y~~l~ 597 (604)
++... ...++|
T Consensus 226 v~~~~-~l~~~~ 236 (402)
T PRK09536 226 VLTAD-TLRAAF 236 (402)
T ss_pred HhCcH-HHHHHh
Confidence 87643 444444
No 107
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=100.00 E-value=3e-46 Score=369.87 Aligned_cols=206 Identities=33% Similarity=0.476 Sum_probs=173.6
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH----H
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES----L 432 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~----~ 432 (604)
++++||+++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 4789999999752 57999999999999999999999999999999999999999999999999988766432 4
Q ss_pred hccceEEcccCcCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 433 REQIGMVTQDTSLLHR-SIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
++.++|++|++.+|.. |++||+.++... .+.++. ...+.+.++.+ |++........+||||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qr 148 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER-----RERAEELLERV-------GLGDRLNHYPSELSGGQQQR 148 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHH-----HHHHHHHHHHc-------CCchhhhcChhhcCHHHHHH
Confidence 5789999999999976 999999886321 111111 11123333332 66666666778999999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeCCEE
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCV 577 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~i 577 (604)
++|||||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||++++|++|++
T Consensus 149 v~la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 149 VAIARALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHHHHHHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 9999999999999999999999999999999999988754 7899999999999888999999999974
No 108
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-45 Score=380.35 Aligned_cols=217 Identities=24% Similarity=0.439 Sum_probs=182.8
Q ss_pred EEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC----CCHHH
Q psy13349 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN----VSQES 431 (604)
Q Consensus 360 i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~----~~~~~ 431 (604)
|+++||+|+|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 7899999999743 259999999999999999999999999999999999999999999999999863 33567
Q ss_pred HhccceEEcccC--cCCcccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhH
Q psy13349 432 LREQIGMVTQDT--SLLHRSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQ 506 (604)
Q Consensus 432 ~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq 506 (604)
+|+.++||+|+| .+|+.|+.||+.++... .+.++..+. +.+.++.+ |+. ........+|||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~L~~~~~~~~~~~LSgGq 149 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKI-----AAEKLEMV-------GLADEFWEKSPFELSGGQ 149 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHH-----HHHHHHHc-------CCChhhccCCcccCCHHH
Confidence 888999999998 78889999999987422 223322211 12222221 453 23456678999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~ 584 (604)
|||++|||||+.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+. .||||++|++|++++.|+++
T Consensus 150 kqrvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~ 229 (288)
T PRK13643 150 MRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPS 229 (288)
T ss_pred HHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHH
Confidence 999999999999999999999999999999999999998875 4799999999999874 59999999999999999999
Q ss_pred HHhh
Q psy13349 585 DLLK 588 (604)
Q Consensus 585 ~l~~ 588 (604)
++..
T Consensus 230 ~~~~ 233 (288)
T PRK13643 230 DVFQ 233 (288)
T ss_pred HHHc
Confidence 9865
No 109
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.6e-46 Score=376.33 Aligned_cols=220 Identities=32% Similarity=0.429 Sum_probs=185.6
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN--VSQ 429 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~--~~~ 429 (604)
.+.++++|+++.|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 11 ~~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~~~ 89 (260)
T PRK10744 11 PSKIQVRNLNFYYGK-FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89 (260)
T ss_pred CceEEEEEEEEEeCC-eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccccch
Confidence 357999999999975 479999999999999999999999999999999999986 579999999999853 345
Q ss_pred HHHhccceEEcccCcCCcccHHHHHhcCCC---CCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 430 ESLREQIGMVTQDTSLLHRSIRDNILYGRP---DASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 430 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~---~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
..+|++++|++|++.+|+.|++||+.++.. ..+. +++.++++..++.+ ++.+..++...+|
T Consensus 90 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~~~~~~L 157 (260)
T PRK10744 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWN------------EVKDKLHQSGYSL 157 (260)
T ss_pred HHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCCh------------hhHHHHhcCCCCC
Confidence 678889999999999999999999987532 1222 22333333333211 1223455667899
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEec
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g 581 (604)
|||||||++|||||+++|+++||||||++||+.+++.+.+.|++..+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 158 S~Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 158 SGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999998877789999999999875 58999999999999999
Q ss_pred ChhHHhhc
Q psy13349 582 SHLDLLKK 589 (604)
Q Consensus 582 ~~~~l~~~ 589 (604)
+++++.+.
T Consensus 238 ~~~~~~~~ 245 (260)
T PRK10744 238 NTDTIFTK 245 (260)
T ss_pred CHHHHHhC
Confidence 99998764
No 110
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2.6e-46 Score=366.73 Aligned_cols=199 Identities=35% Similarity=0.557 Sum_probs=168.6
Q ss_pred EEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEc
Q psy13349 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVT 440 (604)
Q Consensus 361 ~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~ 440 (604)
+++|++++|++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..+++.++|++
T Consensus 1 ~~~~l~~~~~~~~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~~~ 77 (205)
T cd03226 1 RIENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGYVM 77 (205)
T ss_pred CcccEEEEeCCcCceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEEEe
Confidence 468999999753579999999999999999999999999999999999999999999999998753 45677899999
Q ss_pred ccC--cCCcccHHHHHhcCCCCCC--HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 441 QDT--SLLHRSIRDNILYGRPDAS--ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 441 Q~~--~lf~~ti~eNi~~g~~~~~--~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
|++ .+|+.|++||+.++.+... ++++.++++.. |++.........||||||||++|||||
T Consensus 78 q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~qrv~laral 141 (205)
T cd03226 78 QDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL----------------DLYALKERHPLSLSGGQKQRLAIAAAL 141 (205)
T ss_pred cChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc----------------CCchhcCCCchhCCHHHHHHHHHHHHH
Confidence 997 4678899999988643222 22344444443 333334444568999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEe
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVA 578 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv 578 (604)
+.+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 142 LSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred HhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999998874 57899999999998864 9999999999985
No 111
>PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=380.20 Aligned_cols=218 Identities=27% Similarity=0.470 Sum_probs=182.9
Q ss_pred EEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC----CCHHH
Q psy13349 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN----VSQES 431 (604)
Q Consensus 360 i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~----~~~~~ 431 (604)
++++|++++|++. .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 7899999999752 469999999999999999999999999999999999999999999999999863 23556
Q ss_pred HhccceEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhH
Q psy13349 432 LREQIGMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQ 506 (604)
Q Consensus 432 ~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq 506 (604)
+|+.++||+|+| .+|+.|++||+.++.. ..+.++..+. +++.++.+ |++ .........|||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~-------gL~~~~~~~~~~~LSgGq 150 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQK-----AREMIELV-------GLPEELLARSPFELSGGQ 150 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC-------CCChhhhhCCcccCCHHH
Confidence 788999999997 6888899999998632 2233332211 12222222 554 33455677999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||++|||||+.+|++|||||||++||+.+...+.+.++++.+ +.|+|+|||+++.+. .||||++|++|++++.|++
T Consensus 151 ~qrv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~ 230 (290)
T PRK13634 151 MRRVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTP 230 (290)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 9999999999999999999999999999999999999988753 789999999999875 5999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++.+.
T Consensus 231 ~~~~~~ 236 (290)
T PRK13634 231 REIFAD 236 (290)
T ss_pred HHHhcC
Confidence 988654
No 112
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=8.2e-46 Score=379.71 Aligned_cols=220 Identities=26% Similarity=0.433 Sum_probs=184.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
-++++|++++|+++.++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 82 (277)
T PRK13652 3 LIETRDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVGL 82 (277)
T ss_pred eEEEEEEEEEeCCCCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheEE
Confidence 37899999999755569999999999999999999999999999999999999999999999999987777788889999
Q ss_pred EcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 439 VTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 439 v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
++|++ .+|+.|++||+.++.. ..+.++..+ ..++.++.+ |+..........||||||||++|||
T Consensus 83 v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 83 VFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAH-----RVSSALHML-------GLEELRDRVPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EecCcccccccccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHC-------CChhHhcCCcccCCHHHHHHHHHHH
Confidence 99997 3678899999987532 223222211 111222221 4443444556789999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
||+.+|+++||||||++||+.+...+.+.++++.+ ++|+|++||+++.+. .||||++|++|++++.|+++++.+..
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~~ 229 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcCH
Confidence 99999999999999999999999999999988753 789999999999984 69999999999999999999987643
No 113
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8e-46 Score=375.15 Aligned_cols=226 Identities=28% Similarity=0.371 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEECCEeCC--CCCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----YGEILIDGQNIS--NVSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~I~i~g~~~~--~~~~~~ 431 (604)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++. +.+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (253)
T PRK14267 4 AIETVNLRVYYGS-NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDPIE 82 (253)
T ss_pred eEEEEeEEEEeCC-eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccChHH
Confidence 4899999999975 56999999999999999999999999999999999999874 999999999986 445567
Q ss_pred HhccceEEcccCcCCcc-cHHHHHhcCCC--CC--CHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 432 LREQIGMVTQDTSLLHR-SIRDNILYGRP--DA--SEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~--~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
+|+.++|++|++.+|+. |++||+.++.. .. +.+ ++.++++..++.+. +.........+|
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------~~~~~~~~~~~L 150 (253)
T PRK14267 83 VRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDE------------VKDRLNDYPSNL 150 (253)
T ss_pred HhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccc------------hhhhhccChhhC
Confidence 88899999999999976 99999987531 10 111 22222332222111 112345567799
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
|||||||++|||||+++|+++||||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 151 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (253)
T PRK14267 151 SGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999988767999999999998765 9999999999999999
Q ss_pred ChhHHhhcC-cHHHHHH
Q psy13349 582 SHLDLLKKN-GLYSRLW 597 (604)
Q Consensus 582 ~~~~l~~~~-~~y~~l~ 597 (604)
+++++.+.. ..|.+.|
T Consensus 231 ~~~~~~~~~~~~~~~~~ 247 (253)
T PRK14267 231 PTRKVFENPEHELTEKY 247 (253)
T ss_pred CHHHHHhCCCcHHHHHH
Confidence 999987653 2344433
No 114
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=100.00 E-value=1.4e-45 Score=372.07 Aligned_cols=217 Identities=32% Similarity=0.448 Sum_probs=182.3
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEECCEeCCCC--CHHHH
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----YGEILIDGQNISNV--SQESL 432 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~I~i~g~~~~~~--~~~~~ 432 (604)
++++||+++|++ .++++|+||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++... +...+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~~~ 80 (247)
T TIGR00972 2 IEIENLNLFYGE-KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVVEL 80 (247)
T ss_pred EEEEEEEEEECC-eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchHHH
Confidence 789999999975 46999999999999999999999999999999999999998 99999999998753 35567
Q ss_pred hccceEEcccCcCCcccHHHHHhcCCC--C-CCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 433 REQIGMVTQDTSLLHRSIRDNILYGRP--D-ASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~-~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
++.++|+||++.+|+.|++||+.++.. . .+.+ ++.++++..++.+++ .........+||||
T Consensus 81 ~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------~~~~~~~~~~LSgG 148 (247)
T TIGR00972 81 RRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV------------KDRLHDSALGLSGG 148 (247)
T ss_pred HhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcch------------hhHhhCCcccCCHH
Confidence 889999999999999999999987531 1 1111 222222222222111 03445667799999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChh
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~ 584 (604)
||||++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++
T Consensus 149 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 228 (247)
T TIGR00972 149 QQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTE 228 (247)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 99999999999999999999999999999999999999998876789999999999875 59999999999999999999
Q ss_pred HHhhc
Q psy13349 585 DLLKK 589 (604)
Q Consensus 585 ~l~~~ 589 (604)
++.+.
T Consensus 229 ~~~~~ 233 (247)
T TIGR00972 229 QIFTN 233 (247)
T ss_pred HHHhC
Confidence 98754
No 115
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=100.00 E-value=9.4e-46 Score=369.80 Aligned_cols=216 Identities=29% Similarity=0.450 Sum_probs=183.5
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-HhccceE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~~ 438 (604)
++++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (232)
T cd03218 1 LRAENLSKRYGK-RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGIGY 79 (232)
T ss_pred CeEEEEEEEeCC-EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccEEE
Confidence 478999999975 56999999999999999999999999999999999999999999999999988776554 3567999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
++|++.+|++ |++||+.++.+. ...++.. ..++++++.+ |++........+||||||||++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrl~la~a 147 (232)
T cd03218 80 LPQEASIFRKLTVEENILAVLEIRGLSKKERE-----EKLEELLEEF-------HITHLRKSKASSLSGGERRRVEIARA 147 (232)
T ss_pred ecCCccccccCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc-------CChhhhhCChhhCCHHHHHHHHHHHH
Confidence 9999999987 999999875321 1111111 1123333333 66666677778999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
++.+|++|||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 148 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 148 LATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999999998875 47899999999986654 89999999999999999998865
No 116
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=100.00 E-value=6.1e-46 Score=390.85 Aligned_cols=202 Identities=33% Similarity=0.456 Sum_probs=176.2
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----hccceEEcccCcCCc
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL----REQIGMVTQDTSLLH 447 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~ 447 (604)
++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++ |+.++||+|++.+|+
T Consensus 5 ~~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~ 84 (363)
T TIGR01186 5 GKKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFP 84 (363)
T ss_pred CceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCC
Confidence 3569999999999999999999999999999999999999999999999999999888777 789999999999997
Q ss_pred c-cHHHHHhcCCCC--CCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q psy13349 448 R-SIRDNILYGRPD--ASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNA 520 (604)
Q Consensus 448 ~-ti~eNi~~g~~~--~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p 520 (604)
. |++||+.++.+. .+.+ ++.++++.+ |++...++...+||||||||++|||||+.+|
T Consensus 85 ~~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~v----------------gL~~~~~~~p~~LSGGq~QRV~lARAL~~~p 148 (363)
T TIGR01186 85 HMTILQNTSLGPELLGWPEQERKEKALELLKLV----------------GLEEYEHRYPDELSGGMQQRVGLARALAAEP 148 (363)
T ss_pred CCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------CCchhhhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 5 999999986431 1222 222333333 5555566667799999999999999999999
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 521 PILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 521 ~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
+++|||||||+||+.+.+.+++.+.++. .++|+|+|||+++.+ +.||+|++|++|++++.|+++|++++
T Consensus 149 ~iLLlDEP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~ 220 (363)
T TIGR01186 149 DILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRN 220 (363)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhC
Confidence 9999999999999999999999998774 379999999999975 55999999999999999999999875
No 117
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-45 Score=373.48 Aligned_cols=226 Identities=27% Similarity=0.363 Sum_probs=186.5
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCCCCHHHHh
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISNVSQESLR 433 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~~~~~~~r 433 (604)
.++++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...+|
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 81 (250)
T PRK14247 3 KIEIRDLKVSFGQ-VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIELR 81 (250)
T ss_pred eEEEEeeEEEECC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHHHh
Confidence 4899999999975 5699999999999999999999999999999999999974 699999999999888878889
Q ss_pred ccceEEcccCcCC-cccHHHHHhcCCCC----CC----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 434 EQIGMVTQDTSLL-HRSIRDNILYGRPD----AS----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 434 ~~i~~v~Q~~~lf-~~ti~eNi~~g~~~----~~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+.++|+||++.+| +.|++||+.++... .. ++++.++++..++.+. ++........+|||
T Consensus 82 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------~~~~~~~~~~~LSg 149 (250)
T PRK14247 82 RRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDE------------VKDRLDAPAGKLSG 149 (250)
T ss_pred ccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcc------------hhhhhcCCcccCCH
Confidence 9999999999866 56999999875321 01 1222333333332211 11233455678999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+++|++++|||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 150 G~~qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14247 150 GQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPT 229 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCH
Confidence 999999999999999999999999999999999999999998877899999999999875 5999999999999999999
Q ss_pred hHHhhcC-cHHHHHH
Q psy13349 584 LDLLKKN-GLYSRLW 597 (604)
Q Consensus 584 ~~l~~~~-~~y~~l~ 597 (604)
+++.+.. ..+.+.|
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (250)
T PRK14247 230 REVFTNPRHELTEKY 244 (250)
T ss_pred HHHHcCCccHHHHHH
Confidence 9987653 3344333
No 118
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.9e-46 Score=370.60 Aligned_cols=212 Identities=29% Similarity=0.454 Sum_probs=178.8
Q ss_pred eEEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---H
Q psy13349 359 KIFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES---L 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~---~ 432 (604)
.++++||++.|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 48999999999752 46999999999999999999999999999999999999999999999999998877543 3
Q ss_pred h-ccceEEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 433 R-EQIGMVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 433 r-~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
| +.++|++|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+|||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~LSgG~~q 152 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINS-----RALEMLAAV-------GLEHRANHRPSELSGGERQ 152 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CCchhhhCChhhCCHHHHH
Confidence 3 679999999999876 99999987421 112221111 112223322 6666666677899999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecC
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~ 582 (604)
|++||||++.+|+++||||||++||+.+...+.+.|++.. +++|+|+|||+++.+..+|++++|++|++++.|.
T Consensus 153 rl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 153 RVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999998874 4799999999999999999999999999998875
No 119
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.5e-45 Score=375.83 Aligned_cols=220 Identities=28% Similarity=0.411 Sum_probs=184.8
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCH
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISN--VSQ 429 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~--~~~ 429 (604)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 17 ~~~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~~~ 95 (267)
T PRK14235 17 EIKMRARDVSVFYGE-KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRLDV 95 (267)
T ss_pred CceEEEEeEEEEECC-EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccccch
Confidence 457999999999975 5799999999999999999999999999999999999975 89999999999864 345
Q ss_pred HHHhccceEEcccCcCCcccHHHHHhcCCC--CC--C----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCC
Q psy13349 430 ESLREQIGMVTQDTSLLHRSIRDNILYGRP--DA--S----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIK 501 (604)
Q Consensus 430 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~--~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~ 501 (604)
..+|+.++|++|++.+|+.|++||+.++.. .. + ++++.++++..++.+++ .+..+....+
T Consensus 96 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------~~~~~~~~~~ 163 (267)
T PRK14235 96 VELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEV------------KDRLHEPGTG 163 (267)
T ss_pred HHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhh------------hHHhhCCccc
Confidence 677889999999999998899999987521 11 1 12223333333332211 1234456779
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEe
Q psy13349 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEE 580 (604)
Q Consensus 502 LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~ 580 (604)
||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.
T Consensus 164 LSgGq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~ 243 (267)
T PRK14235 164 LSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEV 243 (267)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEe
Confidence 9999999999999999999999999999999999999999999988777899999999999855 899999999999999
Q ss_pred cChhHHhhc
Q psy13349 581 GSHLDLLKK 589 (604)
Q Consensus 581 g~~~~l~~~ 589 (604)
|+++++...
T Consensus 244 g~~~~~~~~ 252 (267)
T PRK14235 244 GDTEKMFTN 252 (267)
T ss_pred CCHHHHHhC
Confidence 999998754
No 120
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=100.00 E-value=9.5e-46 Score=389.80 Aligned_cols=216 Identities=25% Similarity=0.443 Sum_probs=181.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++...++ .++.++|
T Consensus 2 ~L~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i~~ 78 (353)
T PRK10851 2 SIEIANIKKSFGR-TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKVGF 78 (353)
T ss_pred EEEEEEEEEEeCC-eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCEEE
Confidence 3789999999975 569999999999999999999999999999999999999999999999999976554 3568999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPD------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
|+|++.+|+. |++||+.++... .+.++..+ .+.+.++.+ |++.........||||||||++
T Consensus 79 v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~L~~~~~~~~~~LSgGq~QRva 146 (353)
T PRK10851 79 VFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKA-----KVTQLLEMV-------QLAHLADRYPAQLSGGQKQRVA 146 (353)
T ss_pred EecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHH-----HHHHHHHHc-------CCchhhhCChhhCCHHHHHHHH
Confidence 9999999975 999999987421 12222111 111222221 4444445566799999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
|||||+++|++++||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 147 lArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~ 226 (353)
T PRK10851 147 LARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWR 226 (353)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999988763 7899999999998654 99999999999999999999976
Q ss_pred c
Q psy13349 589 K 589 (604)
Q Consensus 589 ~ 589 (604)
+
T Consensus 227 ~ 227 (353)
T PRK10851 227 E 227 (353)
T ss_pred C
Confidence 5
No 121
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.2e-45 Score=366.13 Aligned_cols=209 Identities=25% Similarity=0.409 Sum_probs=176.0
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....++++++|+
T Consensus 1 i~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~-~~~~~~~~i~~~ 78 (220)
T cd03265 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVRRRIGIV 78 (220)
T ss_pred CEEEEEEEEECC-EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCc-ChHHHhhcEEEe
Confidence 578999999975 579999999999999999999999999999999999999999999999998865 335677899999
Q ss_pred cccCcCCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRP--DASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~--~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
||++.+|+. |++||+.++.. ..+. +++.++++.. |++........+||||||||++|
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~qr~~l 142 (220)
T cd03265 79 FQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV----------------GLLEAADRLVKTYSGGMRRRLEI 142 (220)
T ss_pred cCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------------CCHHHhhCChhhCCHHHHHHHHH
Confidence 999998875 99999986421 1111 1223333333 33333334456899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHH
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-K-GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~-~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 586 (604)
|||++.+|+++||||||++||+.+.+.+.+.|.+.. + ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 143 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 143 ARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 999999999999999999999999999999998865 3 7899999999998765 899999999999999988764
No 122
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.6e-46 Score=364.40 Aligned_cols=203 Identities=28% Similarity=0.455 Sum_probs=172.8
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
|+++|+++.|++ .++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|+
T Consensus 1 i~~~~~~~~~~~-~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 77 (211)
T cd03264 1 LQLENLTKRYGK-KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIGYL 77 (211)
T ss_pred CEEEEEEEEECC-EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheEEe
Confidence 478999999975 47999999999999 99999999999999999999999999999999999987766 6778899999
Q ss_pred cccCcCCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRP--DASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~--~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+|++.+|.. |++||+.+... ..+. +++.++++..++. ........+||||||||++|
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------------~~~~~~~~~LS~G~~qrv~l 141 (211)
T cd03264 78 PQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLG----------------DRAKKKIGSLSGGMRRRVGI 141 (211)
T ss_pred cCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCH----------------HHHhCchhhCCHHHHHHHHH
Confidence 999999976 99999986421 1111 2233333333332 22233446899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEec
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g 581 (604)
||||+.+|+++||||||++||+.+.+.+.+.+++..+++|+|++||+++.+. .|||+++|++|++++.|
T Consensus 142 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 142 AQALVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 9999999999999999999999999999999998877799999999999886 48999999999998865
No 123
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.6e-45 Score=377.56 Aligned_cols=216 Identities=28% Similarity=0.474 Sum_probs=185.1
Q ss_pred eEEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
.++++||+++|++. .++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999742 3599999999999999999999999999999999999999999999999999877777888999
Q ss_pred eEEcccCc--CCcccHHHHHhcCCC--CCCHHHH----HHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 437 GMVTQDTS--LLHRSIRDNILYGRP--DASECEL----FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 437 ~~v~Q~~~--lf~~ti~eNi~~g~~--~~~~~~i----~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
+|++|++. +++.|+.||+.++.. ..+.++. ..+++.. |+..........|||||+|
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~q 147 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAV----------------NMLDFKTREPARLSGGQKQ 147 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC----------------CCHhHhhCCcccCCHHHHH
Confidence 99999983 667899999987532 2233332 2222322 3333344456789999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHH
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 586 (604)
|++|||||+++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++
T Consensus 148 rv~lAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (277)
T PRK13642 148 RVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSEL 227 (277)
T ss_pred HHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999988763 7899999999999988999999999999999999998
Q ss_pred hhcC
Q psy13349 587 LKKN 590 (604)
Q Consensus 587 ~~~~ 590 (604)
.+..
T Consensus 228 ~~~~ 231 (277)
T PRK13642 228 FATS 231 (277)
T ss_pred hcCH
Confidence 7643
No 124
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=100.00 E-value=1.2e-45 Score=362.80 Aligned_cols=203 Identities=25% Similarity=0.405 Sum_probs=174.0
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+++.++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~~~ 77 (208)
T cd03268 1 LKTNDLTKTYGK-KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIGAL 77 (208)
T ss_pred CEEEEEEEEECC-eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEEEe
Confidence 478999999964 5799999999999999999999999999999999999999999999999988654 4567889999
Q ss_pred cccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
||++.+|+ .|++||+.++.. ..+++++.++++..++++ ........||||||||++||||+
T Consensus 78 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------------~~~~~~~~LS~G~~qrv~la~al 141 (208)
T cd03268 78 IEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKD----------------SAKKKVKGFSLGMKQRLGIALAL 141 (208)
T ss_pred cCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH----------------HHhhhHhhCCHHHHHHHHHHHHH
Confidence 99998884 699999987531 223444555555544433 33344568999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
+.+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 142 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 142 LGNPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred hcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999999998875 47899999999998864 9999999999998765
No 125
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=377.23 Aligned_cols=218 Identities=31% Similarity=0.542 Sum_probs=184.3
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHHhccceE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~-~~~~r~~i~~ 438 (604)
++++|++++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++|
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 81 (274)
T PRK13644 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLVGI 81 (274)
T ss_pred EEEEEEEEEcCCCCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhheEE
Confidence 689999999965556999999999999999999999999999999999999999999999999997765 3567889999
Q ss_pred EcccCc--CCcccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 439 VTQDTS--LLHRSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 439 v~Q~~~--lf~~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
++|+|. +++.|++||+.++... .+.++..+. +.+.++.+ |++.........|||||+||++|||
T Consensus 82 v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~-------gl~~~~~~~~~~LS~G~~qrv~lar 149 (274)
T PRK13644 82 VFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKR-----VDRALAEI-------GLEKYRHRSPKTLSGGQGQCVALAG 149 (274)
T ss_pred EEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHC-------CCHHHhcCCcccCCHHHHHHHHHHH
Confidence 999985 5677999999886321 222222111 11222222 5555556667799999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||+.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.++.||+|++|++|++++.|+++++...
T Consensus 150 al~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 150 ILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999999999998875 47999999999999988999999999999999999887653
No 126
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=376.86 Aligned_cols=219 Identities=33% Similarity=0.551 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 359 KIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
.++++|++++|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 7 ~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i~ 86 (271)
T PRK13632 7 MIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKIG 86 (271)
T ss_pred EEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcceE
Confidence 5899999999973 457999999999999999999999999999999999999999999999999998777778899999
Q ss_pred EEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|++|++ .++..|++||+.++.. ..+.++... .+.+.++.+ |++........+||||||||++||
T Consensus 87 ~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 87 IIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKD-----IIDDLAKKV-------GMEDYLDKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc-------CCHHHhhCCcccCCHHHHHHHHHH
Confidence 999998 3456799999987532 122222211 112222222 455555566679999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|||+++|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||++++|++|++++.|+.+++.+.
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999988753 4899999999999888999999999999999998887654
No 127
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=100.00 E-value=8.7e-46 Score=365.47 Aligned_cols=201 Identities=35% Similarity=0.500 Sum_probs=169.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---SLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~---~~r~~i 436 (604)
++++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++.. .+++.+
T Consensus 2 l~~~~l~~~~~~~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~~i 81 (214)
T TIGR02673 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRRRI 81 (214)
T ss_pred EEEEeeeEEeCCCceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHhhe
Confidence 68999999996445799999999999999999999999999999999999999999999999999876543 467889
Q ss_pred eEEcccCcCCc-ccHHHHHhcCCC--CCC----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 437 GMVTQDTSLLH-RSIRDNILYGRP--DAS----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 437 ~~v~Q~~~lf~-~ti~eNi~~g~~--~~~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+|++|++.+|. .|++||+.++.. ..+ ++++.++++..++ .........+||||||||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l----------------~~~~~~~~~~LS~G~~qr 145 (214)
T TIGR02673 82 GVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGL----------------EHKADAFPEQLSGGEQQR 145 (214)
T ss_pred EEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCC----------------hhhhhCChhhCCHHHHHH
Confidence 99999999986 599999987521 111 2233333333333 322333445899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCE
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGC 576 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~ 576 (604)
++|||||+++|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|+
T Consensus 146 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 146 VAIARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999998875 47999999999998876 89999999985
No 128
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.6e-45 Score=367.86 Aligned_cols=219 Identities=26% Similarity=0.380 Sum_probs=182.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~ 437 (604)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (237)
T PRK11614 5 MLSFDKVSAHYGK-IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREAVA 83 (237)
T ss_pred EEEEEeEEEeeCC-ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhCEE
Confidence 4899999999975 57999999999999999999999999999999999999999999999999998877654 677899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
|++|++.+|+. |++||+.++....+.++..+. +.+.++.++ +++.........||||||||++||||+
T Consensus 84 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~------~l~~~~~~~~~~LS~G~~qrl~la~al 152 (237)
T PRK11614 84 IVPEGRRVFSRMTVEENLAMGGFFAERDQFQER-----IKWVYELFP------RLHERRIQRAGTMSGGEQQMLAIGRAL 152 (237)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccChhHHHHH-----HHHHHHHHH------HHHHHHhCchhhCCHHHHHHHHHHHHH
Confidence 99999999975 999999886432222222211 122222222 112222345568999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+ +.||++++|++|++++.|+++++.+.
T Consensus 153 ~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 153 MSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred HhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 489999999999865 55899999999999999999998753
No 129
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=100.00 E-value=2.3e-45 Score=388.79 Aligned_cols=213 Identities=31% Similarity=0.528 Sum_probs=183.1
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++. ++.++
T Consensus 13 ~~L~l~~l~~~~~~-~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~ig 89 (375)
T PRK09452 13 PLVELRGISKSFDG-KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHVN 89 (375)
T ss_pred ceEEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCEE
Confidence 45999999999975 5699999999999999999999999999999999999999999999999999876654 46899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRP--DASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
||+|++.+|+. |++|||.++.. ..+.+ ++.++++.. |+.........+||||||||+
T Consensus 90 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~p~~LSgGq~QRV 153 (375)
T PRK09452 90 TVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMV----------------QLEEFAQRKPHQLSGGQQQRV 153 (375)
T ss_pred EEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc----------------CCchhhhCChhhCCHHHHHHH
Confidence 99999999966 99999998742 12222 233333333 444444445568999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
||||||+++|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+ ..||+|++|++|++++.|+++++.
T Consensus 154 aLARaL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~ 233 (375)
T PRK09452 154 AIARAVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIY 233 (375)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988753 78999999999975 559999999999999999999998
Q ss_pred hc
Q psy13349 588 KK 589 (604)
Q Consensus 588 ~~ 589 (604)
++
T Consensus 234 ~~ 235 (375)
T PRK09452 234 EE 235 (375)
T ss_pred hC
Confidence 75
No 130
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.4e-45 Score=378.46 Aligned_cols=215 Identities=28% Similarity=0.470 Sum_probs=183.3
Q ss_pred eEEEEEEEEEeCC-----CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHH
Q psy13349 359 KIFFKNVSFSYDQ-----KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESL 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~-----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~-~~~~ 432 (604)
.++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 4899999999974 246999999999999999999999999999999999999999999999999987643 3567
Q ss_pred hccceEEcccCc--CCcccHHHHHhcCCC--CCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 433 REQIGMVTQDTS--LLHRSIRDNILYGRP--DASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 433 r~~i~~v~Q~~~--lf~~ti~eNi~~g~~--~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
++.++|+||+|. +|..|+.||+.++.. ..+. +++.++++.. |+.........+|||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------------gL~~~~~~~~~~LS~ 147 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKV----------------GMYEYRRHAPHLLSG 147 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHC----------------CCHhHhhCCcccCCH
Confidence 889999999984 677799999988632 1122 2233333333 444444455568999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecC
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~ 582 (604)
|||||++|||||+.+|+++||||||++||+.+...+.+.++++. .++|+|++||+++.+..||++++|++|++++.|+
T Consensus 148 G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~ 227 (280)
T PRK13633 148 GQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227 (280)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999998875 3789999999999998899999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
++++.+.
T Consensus 228 ~~~~~~~ 234 (280)
T PRK13633 228 PKEIFKE 234 (280)
T ss_pred HHHHhcC
Confidence 9998764
No 131
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=100.00 E-value=1.8e-45 Score=364.26 Aligned_cols=209 Identities=30% Similarity=0.475 Sum_probs=175.8
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
++++||+++|++. .++++|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.. ...++++.+
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 6899999999753 169999999999999999999999999999999999999999999999999875 456678899
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
+|++|++.+|+. |++||+.+... ..+.++..+ .+.+.++.+ |++........+||||||||++||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv~la 148 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTA-----RLEELADRL-------GMEELLDRRVGGFSTGMRQKVAIA 148 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CCHHHHhhhhhhcCHHHHHHHHHH
Confidence 999999999985 99999976421 112222111 112233322 555556667779999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
||++.+|+++||||||++||+.+.+.+.+.++++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 149 ral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 149 RALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 99999999999999999999999999999998875 47899999999998765 8999999999998765
No 132
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=100.00 E-value=2.6e-45 Score=380.41 Aligned_cols=218 Identities=28% Similarity=0.459 Sum_probs=182.0
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...|+.+|
T Consensus 6 ~~i~i~~l~k~~~~-~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~ig 83 (306)
T PRK13537 6 APIDFRNVEKRYGD-KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRVG 83 (306)
T ss_pred ceEEEEeEEEEECC-eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcEE
Confidence 46999999999975 56999999999999999999999999999999999999999999999999987644 45788999
Q ss_pred EEcccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
|+||++.+|. .|++||+.+... ..+..+..+. +.+.++.+ |+.........+||||||||++|||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 84 VVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARAL-----VPPLLEFA-------KLENKADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc-------CCchHhcCchhhCCHHHHHHHHHHH
Confidence 9999999986 599999986321 1222222211 12222221 3333333344589999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||+.+|++++|||||++||+.+...+++.|+++. +++|+|++||+++.++. ||+|++|++|++++.|+++++.+.
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999875 47999999999999865 999999999999999999999754
No 133
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.2e-45 Score=374.35 Aligned_cols=221 Identities=29% Similarity=0.418 Sum_probs=186.2
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 11 ~l~i~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 89 (265)
T PRK10575 11 TFALRNVSFRVPG-RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKVAY 89 (265)
T ss_pred eEEEeeEEEEECC-EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhheEE
Confidence 5899999999975 579999999999999999999999999999999999999999999999999988888888889999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCCC----------CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPDA----------SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQR 507 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~~----------~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~ 507 (604)
++|++.++.+ |+.||+.++.... .++++.++++..++ +........+||||||
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----------------~~~~~~~~~~LSgG~~ 153 (265)
T PRK10575 90 LPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGL----------------KPLAHRLVDSLSGGER 153 (265)
T ss_pred eccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCC----------------HHHhcCCcccCCHHHH
Confidence 9999877655 9999998753210 11223333333333 3333344458999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChh
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-K-GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~-~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~ 584 (604)
||++|||||+.+|+++||||||++||+.+.+.+.+.|.++. + ++|+|++||+++.+. .||+|++|++|++++.|+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~ 233 (265)
T PRK10575 154 QRAWIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233 (265)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHH
Confidence 99999999999999999999999999999999999998875 2 789999999999885 59999999999999999999
Q ss_pred HHhhcCcHHHHHH
Q psy13349 585 DLLKKNGLYSRLW 597 (604)
Q Consensus 585 ~l~~~~~~y~~l~ 597 (604)
++.+. ..+.++|
T Consensus 234 ~~~~~-~~~~~~~ 245 (265)
T PRK10575 234 ELMRG-ETLEQIY 245 (265)
T ss_pred HhcCH-HHHHHHh
Confidence 88753 3344554
No 134
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1e-45 Score=377.38 Aligned_cols=218 Identities=31% Similarity=0.463 Sum_probs=180.6
Q ss_pred EEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----hccc
Q psy13349 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL----REQI 436 (604)
Q Consensus 361 ~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~----r~~i 436 (604)
.++|+++.|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ ++++
T Consensus 26 ~~~~~~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~i 104 (269)
T cd03294 26 SKEEILKKTGQ-TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKI 104 (269)
T ss_pred hhhhhhhhcCC-ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCcE
Confidence 56788888864 569999999999999999999999999999999999999999999999999887765443 4689
Q ss_pred eEEcccCcCCc-ccHHHHHhcCCC--CCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 437 GMVTQDTSLLH-RSIRDNILYGRP--DASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 437 ~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+|+||++.+|+ .|++||+.++.. ..+. +++.++++.. |++..+.....+||||||||
T Consensus 105 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~Gq~qr 168 (269)
T cd03294 105 SMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV----------------GLEGWEHKYPDELSGGMQQR 168 (269)
T ss_pred EEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------------CCHhHhhCCcccCCHHHHHH
Confidence 99999999985 599999987521 1111 2222333333 44444444556899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHH
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l 586 (604)
++|||||+++|++|||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 169 v~lAral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 248 (269)
T cd03294 169 VGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEI 248 (269)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHH
Confidence 999999999999999999999999999999999998874 3789999999999875 5899999999999999999999
Q ss_pred hhc-CcHHHH
Q psy13349 587 LKK-NGLYSR 595 (604)
Q Consensus 587 ~~~-~~~y~~ 595 (604)
.+. ...|.+
T Consensus 249 ~~~~~~~~~~ 258 (269)
T cd03294 249 LTNPANDYVR 258 (269)
T ss_pred HhCcCcHHHH
Confidence 764 344544
No 135
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.7e-45 Score=373.17 Aligned_cols=221 Identities=29% Similarity=0.494 Sum_probs=187.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 3 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 81 (255)
T PRK11231 3 LRTENLTVGYGT-KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLALL 81 (255)
T ss_pred EEEEeEEEEECC-EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheEEe
Confidence 789999999975 5799999999999999999999999999999999999999999999999998887777888899999
Q ss_pred cccCcCCcc-cHHHHHhcCCCCC-------C---HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRPDA-------S---ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~~~-------~---~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
||++.+|++ |+.||+.++.... . ++++.++++.. |++.........|||||+|
T Consensus 82 ~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~q 145 (255)
T PRK11231 82 PQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQT----------------RINHLADRRLTDLSGGQRQ 145 (255)
T ss_pred cccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHc----------------CCHHHHcCCcccCCHHHHH
Confidence 999998876 9999998863210 1 11222222222 4444445566799999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHH
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l 586 (604)
|++||||++.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++
T Consensus 146 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 225 (255)
T PRK11231 146 RAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEV 225 (255)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHh
Confidence 9999999999999999999999999999999999998875 4789999999999875 5899999999999999999988
Q ss_pred hhcCcHHHHHHH
Q psy13349 587 LKKNGLYSRLWR 598 (604)
Q Consensus 587 ~~~~~~y~~l~~ 598 (604)
.+. ..+.+.+.
T Consensus 226 ~~~-~~~~~~~~ 236 (255)
T PRK11231 226 MTP-GLLRTVFD 236 (255)
T ss_pred cCH-HHHHHHhC
Confidence 653 34555553
No 136
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.5e-45 Score=373.50 Aligned_cols=219 Identities=29% Similarity=0.428 Sum_probs=183.8
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~--~~~~ 430 (604)
..++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 12 ~~l~i~nl~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~~~ 90 (269)
T PRK14259 12 IIISLQNVTISYGT-FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVDPV 90 (269)
T ss_pred ceEEEEeEEEEECC-EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCCHH
Confidence 46999999999975 569999999999999999999999999999999999987 689999999999853 4566
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCC--CC---HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPD--AS---ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~---~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
.+|+.++|+||++.+|+.|++||+.++... .. ++++.++++..++.. ++++.......+||||
T Consensus 91 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~l~~~~~~~~~~LS~G 158 (269)
T PRK14259 91 EVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD------------ECKDKLNESGYSLSGG 158 (269)
T ss_pred HHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc------------hhhhhhCCCcccCCHH
Confidence 788899999999999988999999986421 11 122223333322211 2233445566789999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeC----------
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDN---------- 574 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~---------- 574 (604)
||||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++
T Consensus 159 ~~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~ 238 (269)
T PRK14259 159 QQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGK 238 (269)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccc
Confidence 99999999999999999999999999999999999999998877789999999999875 4899999996
Q ss_pred -CEEeEecChhHHhhc
Q psy13349 575 -GCVAEEGSHLDLLKK 589 (604)
Q Consensus 575 -G~iv~~g~~~~l~~~ 589 (604)
|++++.|+.+++.+.
T Consensus 239 ~g~~~~~~~~~~~~~~ 254 (269)
T PRK14259 239 VGYLVEFNETKKIFNS 254 (269)
T ss_pred cceEEEeCCHHHHHhC
Confidence 679999999998764
No 137
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.5e-45 Score=378.83 Aligned_cols=218 Identities=28% Similarity=0.460 Sum_probs=182.2
Q ss_pred EEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC---------
Q psy13349 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN--------- 426 (604)
Q Consensus 360 i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~--------- 426 (604)
|+++||+++|++. .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.+...
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 7899999999753 259999999999999999999999999999999999999999999999877532
Q ss_pred ---------------CCHHHHhccceEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhh
Q psy13349 427 ---------------VSQESLREQIGMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHG 487 (604)
Q Consensus 427 ---------------~~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~ 487 (604)
.+...+++.++||||+| .+|..|++|||.++.. ..+.++..+. +.+.++.+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~----- 152 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKR-----AAKYIELV----- 152 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc-----
Confidence 13456788999999986 6788899999998742 2333333221 12222222
Q ss_pred cCCCc-cccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH-h
Q psy13349 488 RKGYD-AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI-S 564 (604)
Q Consensus 488 ~~g~~-t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~-~ 564 (604)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+ +
T Consensus 153 --gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~ 230 (305)
T PRK13651 153 --GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLE 230 (305)
T ss_pred --CCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHH
Confidence 554 34566778999999999999999999999999999999999999999999998875 489999999999976 5
Q ss_pred hcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 565 AMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 565 ~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
.||||++|++|++++.|+++++.+.
T Consensus 231 ~adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 231 WTKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred hCCEEEEEECCEEEEECCHHHHhcC
Confidence 6999999999999999999998654
No 138
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=3.6e-45 Score=367.98 Aligned_cols=222 Identities=23% Similarity=0.423 Sum_probs=185.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~ 437 (604)
-++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 2 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 80 (242)
T TIGR03411 2 ILYLEGLSVSFDG-FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGIG 80 (242)
T ss_pred eEEEEeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCee
Confidence 3789999999975 56999999999999999999999999999999999999999999999999988776654 456799
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCCCCH--HHH---HHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPDASE--CEL---FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~~~~--~~i---~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
|++|++.+|++ |++||+.++...... ..+ ........++++++.+ |++.........|||||+||++
T Consensus 81 ~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 81 RKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI-------GLADEADRLAGLLSHGQKQWLE 153 (242)
T ss_pred EeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc-------CCchhhcCChhhCCHHHHHHHH
Confidence 99999999986 999999886321000 000 0000111123333332 6666667777899999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 999999999999999999999999999999999988777999999999999865 99999999999999999999865
No 139
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=100.00 E-value=1.6e-45 Score=388.61 Aligned_cols=217 Identities=26% Similarity=0.457 Sum_probs=184.8
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc--cEEEECCEeCCCCCHHHHhcc
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY--GEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~--G~I~i~g~~~~~~~~~~~r~~ 435 (604)
+.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.++ .++.
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~~r~ 80 (362)
T TIGR03258 4 GGIRIDHLRVAYGA-NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--HKRG 80 (362)
T ss_pred eEEEEEEEEEEECC-eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--HHCC
Confidence 57999999999975 569999999999999999999999999999999999999999 999999999976655 3568
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
|+||+|++.+|+. |++||+.|+.. ..+.++..+ ...+.++.+ |++........+||||||||+||
T Consensus 81 ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~-----~v~~~l~~~-------gL~~~~~~~~~~LSgGq~QRvaL 148 (362)
T TIGR03258 81 LALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAE-----RVADALKLV-------GLGDAAAHLPAQLSGGMQQRIAI 148 (362)
T ss_pred EEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHhc-------CCCchhhCChhhCCHHHHHHHHH
Confidence 9999999999966 99999998632 122222221 112222222 56655666677999999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC---CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhh
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK---GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~---~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
||||+.+|++|+||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++|+.+
T Consensus 149 ARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~ 228 (362)
T TIGR03258 149 ARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYD 228 (362)
T ss_pred HHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 9999999999999999999999999999999987653 689999999999865 599999999999999999999987
Q ss_pred c
Q psy13349 589 K 589 (604)
Q Consensus 589 ~ 589 (604)
+
T Consensus 229 ~ 229 (362)
T TIGR03258 229 A 229 (362)
T ss_pred C
Confidence 5
No 140
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=100.00 E-value=1.9e-45 Score=367.05 Aligned_cols=212 Identities=28% Similarity=0.477 Sum_probs=179.6
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-HhccceE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~~ 438 (604)
++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++|
T Consensus 1 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 79 (230)
T TIGR03410 1 LEVSNLNVYYGQ-SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGIAY 79 (230)
T ss_pred CEEEeEEEEeCC-eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCeEE
Confidence 478999999975 57999999999999999999999999999999999999999999999999998776654 4678999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCCC--CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPDA--SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~~--~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
+||++.+|+. |++||+.++.... ..++. ..+.+..+ + +++........+||||||||++||||
T Consensus 80 ~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~--------~~~~l~~~-~-----~l~~~~~~~~~~LS~G~~qrv~la~a 145 (230)
T TIGR03410 80 VPQGREIFPRLTVEENLLTGLAALPRRSRKI--------PDEIYELF-P-----VLKEMLGRRGGDLSGGQQQQLAIARA 145 (230)
T ss_pred eccCCcccCCCcHHHHHHHHHHhcCcchHHH--------HHHHHHHH-H-----hHHHHhhCChhhCCHHHHHHHHHHHH
Confidence 9999999976 9999998763221 11111 11222221 1 23334455667899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHH
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 586 (604)
|+++|+++||||||++||+.+.+.+.+.|.+..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++
T Consensus 146 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 219 (230)
T TIGR03410 146 LVTRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219 (230)
T ss_pred HhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHc
Confidence 9999999999999999999999999999988763 7899999999999875 999999999999999999987
No 141
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=100.00 E-value=9.1e-45 Score=371.20 Aligned_cols=220 Identities=28% Similarity=0.458 Sum_probs=194.9
Q ss_pred cCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q psy13349 356 TNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 356 ~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
..+.|+++|+++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .
T Consensus 36 ~~~~l~i~nls~~---~~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g-------------~ 99 (282)
T cd03291 36 DDNNLFFSNLCLV---GAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG-------------R 99 (282)
T ss_pred CCCeEEEEEEEEe---cccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------E
Confidence 3457999999985 24699999999999999999999999999999999999999999999998 4
Q ss_pred ceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 436 IGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 436 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
++|++|++.+|+.|++||+.++.. ..+.+..++++..++.+.+..+|. ++++.+++.+..||||||||++||||
T Consensus 100 i~yv~q~~~l~~~tv~enl~~~~~-~~~~~~~~~l~~~~l~~~l~~~~~-----~~~~~~~~~~~~LSgGq~qrv~lAra 173 (282)
T cd03291 100 ISFSSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLEEDITKFPE-----KDNTVLGEGGITLSGGQRARISLARA 173 (282)
T ss_pred EEEEeCcccccccCHHHHhhcccc-cCHHHHHHHHHHhCCHHHHHhccc-----cccceecCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999998643 233455566677778888888887 88999999999999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHH-HHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHH
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSL-YNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYS 594 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i-~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~ 594 (604)
|+++|+++||||||++||+.+...+.+.+ .+..+++|+|++||+++.+..||++++|++|++++.|+++++.+....|.
T Consensus 174 L~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 253 (282)
T cd03291 174 VYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSLRPDFS 253 (282)
T ss_pred HhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhcchHHH
Confidence 99999999999999999999999998754 55556799999999999998999999999999999999999987656666
Q ss_pred HHH
Q psy13349 595 RLW 597 (604)
Q Consensus 595 ~l~ 597 (604)
+.|
T Consensus 254 ~~~ 256 (282)
T cd03291 254 SKL 256 (282)
T ss_pred HHH
Confidence 554
No 142
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=100.00 E-value=2.5e-45 Score=373.85 Aligned_cols=227 Identities=30% Similarity=0.440 Sum_probs=185.4
Q ss_pred eEEEEEEEEEeCC--------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH
Q psy13349 359 KIFFKNVSFSYDQ--------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~--------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~ 430 (604)
.++++||++.|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 3789999999963 35799999999999999999999999999999999999999999999999999877654
Q ss_pred ---HHhccceEEcccCc--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCC
Q psy13349 431 ---SLREQIGMVTQDTS--LL-HRSIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGI 500 (604)
Q Consensus 431 ---~~r~~i~~v~Q~~~--lf-~~ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~ 500 (604)
.+|+.++|++|++. ++ ..|++||+.++.. ....++. ...+.++++.+ |++ ........
T Consensus 82 ~~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~-----~~~~~~~l~~~-------gl~~~~~~~~~~ 149 (265)
T TIGR02769 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQ-----KARIAELLDMV-------GLRSEDADKLPR 149 (265)
T ss_pred HHHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHH-----HHHHHHHHHHc-------CCChhhhhCChh
Confidence 36778999999983 44 3599999965321 1111111 11122333332 564 34566778
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEE
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCV 577 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i 577 (604)
.||||||||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||++++|++|++
T Consensus 150 ~LSgGe~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 229 (265)
T TIGR02769 150 QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQI 229 (265)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999988753 789999999999987 5999999999999
Q ss_pred eEecChhHHhhcCc-HHHHHH
Q psy13349 578 AEEGSHLDLLKKNG-LYSRLW 597 (604)
Q Consensus 578 v~~g~~~~l~~~~~-~y~~l~ 597 (604)
++.|+++++.+... .++.+.
T Consensus 230 ~~~g~~~~~~~~~~~~~~~~~ 250 (265)
T TIGR02769 230 VEECDVAQLLSFKHPAGRNLQ 250 (265)
T ss_pred EEECCHHHHcCCCCHHHHHHH
Confidence 99999999987444 444443
No 143
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=100.00 E-value=1.7e-45 Score=365.29 Aligned_cols=207 Identities=29% Similarity=0.460 Sum_probs=173.6
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---Hh
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES---LR 433 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~---~r 433 (604)
++++||+++|++. +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 6899999999742 46999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -ccceEEcccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 434 -EQIGMVTQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 434 -~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+.++|++|++.+|+ .|++||+.++.. ..+..+..+ .+.++++.+ |++.........||||||||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qr 149 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKE-----RAYEMLEKV-------GLEHRINHRPSELSGGERQR 149 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CChhhhhCChhhCCHHHHHH
Confidence 68999999999985 599999987421 111111111 112333322 66666666678999999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEEe
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCVA 578 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~iv 578 (604)
++|||||+++|++|||||||++||+.+...+.+.|.++. .++|+|++||+++.+..+|+|++|++|+++
T Consensus 150 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 150 VAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHHHHHHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 999999999999999999999999999999999998875 378999999999999889999999999986
No 144
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.1e-45 Score=371.62 Aligned_cols=219 Identities=32% Similarity=0.417 Sum_probs=181.5
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN--VSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~--~~~~~ 431 (604)
.++++|++|+|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~~~ 82 (251)
T PRK14251 4 IISAKDVHLSYGN-YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDLVE 82 (251)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchHHH
Confidence 4899999999975 579999999999999999999999999999999999997 479999999999854 33456
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCC--CC-HH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPD--AS-EC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~-~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+++.++|++|++.+|+.|++||+.++... .. .+ ++.++++..++++ ...........+|||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~~~~~~LS~ 150 (251)
T PRK14251 83 LRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWK------------ETKDNLDRNAQAFSG 150 (251)
T ss_pred hhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCc------------chHHHhccChhhCCH
Confidence 78899999999999999999999875321 11 11 1222222222210 001223456679999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
||+||++||||++++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 151 Gq~qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14251 151 GQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPT 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988777899999999998765 899999999999999999
Q ss_pred hHHhhcC
Q psy13349 584 LDLLKKN 590 (604)
Q Consensus 584 ~~l~~~~ 590 (604)
+++....
T Consensus 231 ~~~~~~~ 237 (251)
T PRK14251 231 EEMFIAP 237 (251)
T ss_pred HHHHhCC
Confidence 9987543
No 145
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=100.00 E-value=3.1e-45 Score=358.89 Aligned_cols=198 Identities=34% Similarity=0.576 Sum_probs=180.4
Q ss_pred EEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q psy13349 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 360 i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
++++||++.|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 4789999999764 3699999999999999999999999999999999999999999999998 6
Q ss_pred ceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 436 IGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 436 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
++|++|+|.+|+.|++||+.++.. .++++..++++.+++.+++..+|. |+++.+++.+..||||||||++||||
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~lS~G~~qrv~lara 141 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPD-----GDLTEIGEKGINLSGGQKQRISLARA 141 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccC-----cccceecCCCCcCCHHHHHHHHHHHH
Confidence 999999999999999999998643 345567777888888899999988 99999999999999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHH-HHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCE
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKS-LYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGC 576 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~-i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~ 576 (604)
++.+|+++||||||++||+.+.+.+.+. +++.. +++|+|++||+++.+..||++++|++|+
T Consensus 142 l~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 142 VYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999999999999884 55543 4689999999999998899999999985
No 146
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=100.00 E-value=2.7e-45 Score=371.11 Aligned_cols=217 Identities=28% Similarity=0.489 Sum_probs=183.0
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC-----------
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS----------- 428 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~----------- 428 (604)
|+++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++
T Consensus 1 i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~~ 79 (252)
T TIGR03005 1 VRFSDVTKRFGI-LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPADE 79 (252)
T ss_pred CEEEEEEEEeCC-eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccch
Confidence 479999999975 57999999999999999999999999999999999999999999999999986543
Q ss_pred --HHHHhccceEEcccCcCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 429 --QESLREQIGMVTQDTSLLH-RSIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 429 --~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
...+|+.++|++|++.+|+ .|++||+.++.. ....++..+ .+.+.++.+ |++....+....|
T Consensus 80 ~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~L 147 (252)
T TIGR03005 80 KHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV-------GLADKADHMPAQL 147 (252)
T ss_pred hHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CChhHhhcChhhc
Confidence 2456889999999999885 699999987521 112211111 122333332 5665666677899
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeE
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAE 579 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~ 579 (604)
|||||||++|||||+.+|+++||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+. .||++++|++|++++
T Consensus 148 S~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~ 227 (252)
T TIGR03005 148 SGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVE 227 (252)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999988753 789999999999885 599999999999999
Q ss_pred ecChhHHhhc
Q psy13349 580 EGSHLDLLKK 589 (604)
Q Consensus 580 ~g~~~~l~~~ 589 (604)
.|+++++.+.
T Consensus 228 ~g~~~~~~~~ 237 (252)
T TIGR03005 228 QGKPDEIFRQ 237 (252)
T ss_pred eCCHHHHhcC
Confidence 9999998764
No 147
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=100.00 E-value=1e-44 Score=366.48 Aligned_cols=218 Identities=28% Similarity=0.465 Sum_probs=183.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC--------HH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS--------QE 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~--------~~ 430 (604)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (250)
T PRK11264 3 AIEVKNLVKKFHG-QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLIR 81 (250)
T ss_pred cEEEeceEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHHH
Confidence 3889999999975 46999999999999999999999999999999999999999999999999986532 24
Q ss_pred HHhccceEEcccCcCCc-ccHHHHHhcCC---CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 431 SLREQIGMVTQDTSLLH-RSIRDNILYGR---PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~---~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
.+++.++|+||++.+|+ .|++||+.++. .....++..+ .+.+.++.+ |++........+|||||
T Consensus 82 ~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~LS~Gq 149 (250)
T PRK11264 82 QLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATA-----RARELLAKV-------GLAGKETSYPRRLSGGQ 149 (250)
T ss_pred HhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CCcchhhCChhhCChHH
Confidence 56789999999999886 59999998642 1112211111 112333322 66655666778999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 584 (604)
|||++|||||+.+|++|||||||++||+.+.+.+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 229 (250)
T PRK11264 150 QQRVAIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAK 229 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998875 47899999999998865 8999999999999999999
Q ss_pred HHhhc
Q psy13349 585 DLLKK 589 (604)
Q Consensus 585 ~l~~~ 589 (604)
++.+.
T Consensus 230 ~~~~~ 234 (250)
T PRK11264 230 ALFAD 234 (250)
T ss_pred HHhcC
Confidence 98754
No 148
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=100.00 E-value=1.9e-45 Score=362.85 Aligned_cols=207 Identities=28% Similarity=0.468 Sum_probs=172.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|+
T Consensus 1 i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~~~ 77 (213)
T cd03301 1 VELENVTKRFGN-VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIAMV 77 (213)
T ss_pred CEEEeeEEEECC-eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEEEE
Confidence 478999999975 5799999999999999999999999999999999999999999999999998765432 4689999
Q ss_pred cccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+|++.+|. .|++||+.++.. ..+.++..+. +.+.+..+ |++........+||||||||++|||||
T Consensus 78 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~l~~~~~~~~~~LS~G~~qr~~laral 145 (213)
T cd03301 78 FQNYALYPHMTVYDNIAFGLKLRKVPKDEIDER-----VREVAELL-------QIEHLLDRKPKQLSGGQRQRVALGRAI 145 (213)
T ss_pred ecChhhccCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc-------CCHHHHhCChhhCCHHHHHHHHHHHHH
Confidence 99999985 599999987521 1222221111 11222221 555455556678999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
+++|+++||||||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 146 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 146 VREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 99999999999999999999999999998875 37899999999998765 8999999999999876
No 149
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-45 Score=365.92 Aligned_cols=207 Identities=31% Similarity=0.487 Sum_probs=171.8
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
++++|+++.|++. +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++.+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 4789999999752 579999999999999999999999999999999999999999999999998763 46789
Q ss_pred eEEcccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 437 GMVTQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 437 ~~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
+|+||++.+|+ .|++||+.++.. ..+.++.. ..+.+.++.+ |++........+||||||||++||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrl~la 143 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEAR-----ERAEELLELV-------GLSGFENAYPHQLSGGMRQRVALA 143 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc-------CChhhhhCCcccCCHHHHHHHHHH
Confidence 99999999987 599999987531 11111111 1112222222 555455555678999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEe--CCEEeEecCh
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLD--NGCVAEEGSH 583 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~--~G~iv~~g~~ 583 (604)
|||+.+|+++||||||++||+.+...+.+.|++.. .++|+|+|||+++.+. .||++++|+ +|+++++++.
T Consensus 144 ~al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 144 RALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HHHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999999999999998874 3789999999999765 589999999 7999998764
No 150
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=6.6e-45 Score=365.60 Aligned_cols=217 Identities=32% Similarity=0.535 Sum_probs=183.8
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC--HHHHhccce
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS--QESLREQIG 437 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~--~~~~r~~i~ 437 (604)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ...+++.++
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 80 (240)
T PRK09493 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQEAG 80 (240)
T ss_pred EEEEeEEEEECC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhceE
Confidence 689999999974 56999999999999999999999999999999999999999999999999987643 356788999
Q ss_pred EEcccCcCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDTSLLH-RSIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~~lf~-~ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|++|++.+|. .|++||+.++.. ..+.++..+ .+.+.++.+ |++.........||||||||++||
T Consensus 81 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~LS~G~~qrv~la 148 (240)
T PRK09493 81 MVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV-------GLAERAHHYPSELSGGQQQRVAIA 148 (240)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc-------CChHHHhcChhhcCHHHHHHHHHH
Confidence 9999999886 599999987531 112222111 112333322 666666667789999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||++++|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 149 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 149 RALAVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998875 47999999999999865 999999999999999999998764
No 151
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=100.00 E-value=2.1e-45 Score=362.69 Aligned_cols=202 Identities=32% Similarity=0.471 Sum_probs=170.5
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHhccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ---ESLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~---~~~r~~i 436 (604)
++++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.+
T Consensus 1 l~~~~l~~~~~~~~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 80 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRRKI 80 (214)
T ss_pred CEEEEEEEEeCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHHhe
Confidence 4689999999754579999999999999999999999999999999999999999999999999987654 3467889
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCC--CCCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRP--DASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+|++|++.+|+. |++||+.++.. ..+.+ ++.++++.. |++........+||||||||
T Consensus 81 ~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~qr 144 (214)
T cd03292 81 GVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV----------------GLSHKHRALPAELSGGEQQR 144 (214)
T ss_pred EEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------------CCHHHhhCChhhcCHHHHHH
Confidence 999999999975 99999987531 11222 222222222 44434444556899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
++|||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++
T Consensus 145 v~laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 145 VAIARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999998874 57999999999999875 899999999974
No 152
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.9e-45 Score=388.89 Aligned_cols=216 Identities=31% Similarity=0.509 Sum_probs=182.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++|
T Consensus 3 ~l~i~~l~~~~~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i~~ 79 (369)
T PRK11000 3 SVTLRNVTKAYGD-VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGVGM 79 (369)
T ss_pred EEEEEEEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCEEE
Confidence 4899999999975 5699999999999999999999999999999999999999999999999999876543 468999
Q ss_pred EcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|+|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++||||
T Consensus 80 v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~-----~~~~~l~~l-------gL~~~~~~~~~~LSgGq~QRvaLAra 147 (369)
T PRK11000 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEEINQ-----RVNQVAEVL-------QLAHLLDRKPKALSGGQRQRVAIGRT 147 (369)
T ss_pred EeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHH-----HHHHHHHHc-------CChhhhcCChhhCCHHHHHHHHHHHH
Confidence 9999999965 99999998642 122222111 112222222 55555556667899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|+.+|++||||||||+||+.+.+.+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++...
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~ 224 (369)
T PRK11000 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHY 224 (369)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999999988743 789999999999765 5999999999999999999998764
No 153
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-45 Score=371.36 Aligned_cols=218 Identities=29% Similarity=0.392 Sum_probs=182.5
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEECCEeCCC--CCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD--I---KYGEILIDGQNISN--VSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~I~i~g~~~~~--~~~~~ 431 (604)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+...
T Consensus 12 ~l~i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 90 (259)
T PRK14274 12 VYQINGMNLWYGQ-HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDLVE 90 (259)
T ss_pred eEEEeeEEEEECC-eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCHHH
Confidence 5899999999975 479999999999999999999999999999999999997 3 58999999999863 34557
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCC---CCHHHH----HHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPD---ASECEL----FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~---~~~~~i----~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+|+.++|+||++.+|+.|++||+.++... .++++. .++++..++.++ +.+.......+|||
T Consensus 91 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------~~~~l~~~~~~LS~ 158 (259)
T PRK14274 91 LRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDE------------VKDRLHTQALSLSG 158 (259)
T ss_pred HhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchh------------hhhhhhCCcccCCH
Confidence 78899999999999988999999876321 122222 222222222111 12334566779999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+++|+++||||||++||+.+...+.+.|.+..+++|+|+|||+++.+. .|||+++|++|++++.|++
T Consensus 159 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~ 238 (259)
T PRK14274 159 GQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDT 238 (259)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999998877899999999999875 4899999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++.+.
T Consensus 239 ~~~~~~ 244 (259)
T PRK14274 239 NKMFSN 244 (259)
T ss_pred HHHhhC
Confidence 998754
No 154
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.1e-45 Score=375.33 Aligned_cols=215 Identities=31% Similarity=0.511 Sum_probs=185.1
Q ss_pred ceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---cEEEECCEeCCCCCHHHHh
Q psy13349 358 GKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY---GEILIDGQNISNVSQESLR 433 (604)
Q Consensus 358 ~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~I~i~g~~~~~~~~~~~r 433 (604)
..++++|++|+|++ ..++++|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 4 ~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred ceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 35899999999975 3469999999999999999999999999999999999999998 8999999999877777788
Q ss_pred ccceEEcccCc--CCcccHHHHHhcCCCC--CCHHH----HHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 434 EQIGMVTQDTS--LLHRSIRDNILYGRPD--ASECE----LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 434 ~~i~~v~Q~~~--lf~~ti~eNi~~g~~~--~~~~~----i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
++++|++|++. +++.|++||+.++.+. .+.++ +.++++.. |+.........+||||
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~----------------~L~~~~~~~~~~LS~G 147 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV----------------GMLDYIDSEPANLSGG 147 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC----------------CChhHhcCCcccCCHH
Confidence 89999999983 5678999999876322 23322 22222222 4444455566799999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeCCEEeEecCh
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~ 583 (604)
|+||++|||||+.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|++
T Consensus 148 ~~qrv~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~ 227 (282)
T PRK13640 148 QKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSP 227 (282)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999988753 7899999999999988999999999999999999
Q ss_pred hHHhh
Q psy13349 584 LDLLK 588 (604)
Q Consensus 584 ~~l~~ 588 (604)
+++.+
T Consensus 228 ~~~~~ 232 (282)
T PRK13640 228 VEIFS 232 (282)
T ss_pred HHHhc
Confidence 88765
No 155
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-45 Score=371.12 Aligned_cols=218 Identities=29% Similarity=0.430 Sum_probs=181.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC---CCC--CccEEEECCEeCCCC--CHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF---YDI--KYGEILIDGQNISNV--SQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~---~~~--~~G~I~i~g~~~~~~--~~~~ 431 (604)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+ ++| ++|+|.++|.++... +...
T Consensus 3 ~l~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 81 (250)
T PRK14245 3 KIDARDVNFWYGD-FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQVDE 81 (250)
T ss_pred EEEEEEEEEEECC-EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccHHH
Confidence 5899999999975 5699999999999999999999999999999999997 454 589999999998754 3456
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCC--C-CHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPD--A-SEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+++.++|+||++.+|+.|++||+.++... . ..+ ++.++++..++.+ .+.+...+.+.+|||
T Consensus 82 ~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~~~~~~LS~ 149 (250)
T PRK14245 82 LRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWD------------EVKDKLKESAFALSG 149 (250)
T ss_pred HhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCc------------chhhhhhCCcccCCH
Confidence 78899999999999988999999875311 1 111 1222222222211 122345567789999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 150 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~ 229 (250)
T PRK14245 150 GQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDT 229 (250)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999999999999998877899999999999874 5999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++.+.
T Consensus 230 ~~~~~~ 235 (250)
T PRK14245 230 KKIFTN 235 (250)
T ss_pred HHHhcC
Confidence 999764
No 156
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=100.00 E-value=2.9e-45 Score=365.14 Aligned_cols=210 Identities=34% Similarity=0.495 Sum_probs=174.4
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH---HHHh
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ---ESLR 433 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~---~~~r 433 (604)
++++||+++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 6899999999753 279999999999999999999999999999999999999999999999999987763 5678
Q ss_pred ccceEEcccC--cCC-cccHHHHHhcCCC----CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChh
Q psy13349 434 EQIGMVTQDT--SLL-HRSIRDNILYGRP----DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGG 505 (604)
Q Consensus 434 ~~i~~v~Q~~--~lf-~~ti~eNi~~g~~----~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgG 505 (604)
+.++|++|++ .++ ..|++||+.++.. ...+++...+. .+.++.+ |+. ........+||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~-------~l~~~~~~~~~~~LS~G 149 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV-------GLPEEVLNRYPHELSGG 149 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC-------CCChhHhhCCchhcCHH
Confidence 8999999999 344 4699999976421 11111111110 1223322 553 4556677899999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEec
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g 581 (604)
||||++|||||+.+|+++||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 150 ~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 150 QRQRVAIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 99999999999999999999999999999999999999988753 789999999999887 59999999999998765
No 157
>PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.5e-45 Score=373.90 Aligned_cols=218 Identities=27% Similarity=0.438 Sum_probs=183.0
Q ss_pred EEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHHH
Q psy13349 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV----SQES 431 (604)
Q Consensus 360 i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~----~~~~ 431 (604)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 7899999999752 3699999999999999999999999999999999999999999999999998754 3466
Q ss_pred HhccceEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhH
Q psy13349 432 LREQIGMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQ 506 (604)
Q Consensus 432 ~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq 506 (604)
+|+.|+|+||++ .+|+.|++||+.++.. ..+.++..+. +.++++.+ |++ ........+|||||
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~l~~~~~~~~~~~LSgG~ 150 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEAL-----AREKLALV-------GISESLFEKNPFELSGGQ 150 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc-------CCChhhhhCCcccCCHHH
Confidence 788999999998 5788899999987521 1233322211 12223222 554 24456678999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~ 584 (604)
|||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++
T Consensus 151 ~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (280)
T PRK13649 151 MRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPK 230 (280)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998875 4789999999999885 48999999999999999998
Q ss_pred HHhhc
Q psy13349 585 DLLKK 589 (604)
Q Consensus 585 ~l~~~ 589 (604)
++.+.
T Consensus 231 ~~~~~ 235 (280)
T PRK13649 231 DIFQD 235 (280)
T ss_pred HHhcC
Confidence 88653
No 158
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=100.00 E-value=5.3e-45 Score=372.26 Aligned_cols=228 Identities=24% Similarity=0.366 Sum_probs=187.1
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhc
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---SLRE 434 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~---~~r~ 434 (604)
..++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+++
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 84 (269)
T PRK11831 6 NLVDMRGVSFTRGN-RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVRK 84 (269)
T ss_pred ceEEEeCeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHhh
Confidence 35899999999964 5699999999999999999999999999999999999999999999999998776543 3577
Q ss_pred cceEEcccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 435 QIGMVTQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 435 ~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
.++|++|++.+|+. |++||+.++.. ..+.++... ...+.++.+ |+.........+||||||||+
T Consensus 85 ~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 85 RMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHS-----TVMMKLEAV-------GLRGAAKLMPSELSGGMARRA 152 (269)
T ss_pred cEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHH-----HHHHHHHHc-------CChhhhhCChhhCCHHHHHHH
Confidence 89999999999976 99999987421 112211111 111222221 555445556679999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+|||||+++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988753 7899999999998765 8999999999999999999987
Q ss_pred hcC-cHHHHHHH
Q psy13349 588 KKN-GLYSRLWR 598 (604)
Q Consensus 588 ~~~-~~y~~l~~ 598 (604)
+.. ..++.++.
T Consensus 233 ~~~~~~~~~~~~ 244 (269)
T PRK11831 233 ANPDPRVRQFLD 244 (269)
T ss_pred cCCcHHHHHHHH
Confidence 643 34555554
No 159
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.1e-45 Score=366.86 Aligned_cols=219 Identities=27% Similarity=0.450 Sum_probs=183.1
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC------CCCHHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS------NVSQESL 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~------~~~~~~~ 432 (604)
.++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+
T Consensus 2 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 80 (242)
T PRK11124 2 SIQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIREL 80 (242)
T ss_pred EEEEEeeEEEECC-eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHHH
Confidence 3789999999975 57999999999999999999999999999999999999999999999999873 1234567
Q ss_pred hccceEEcccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 433 REQIGMVTQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
|+.++|+||++.+|++ |++||+.++.. ..+.++.. ..+.+++..+ |++........+|||||||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~-----~~~~~~l~~~-------gl~~~~~~~~~~LS~G~~q 148 (242)
T PRK11124 81 RRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQAL-----ARAEKLLERL-------RLKPYADRFPLHLSGGQQQ 148 (242)
T ss_pred HhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc-------CChhhhhCChhhCCHHHHH
Confidence 8899999999999975 99999975311 12222211 1123333332 6666666677899999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHH
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 586 (604)
|++||||++++|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~laral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 228 (242)
T PRK11124 149 RVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCF 228 (242)
T ss_pred HHHHHHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHh
Confidence 9999999999999999999999999999999999998875 47999999999999864 999999999999999999987
Q ss_pred hhcC
Q psy13349 587 LKKN 590 (604)
Q Consensus 587 ~~~~ 590 (604)
.+..
T Consensus 229 ~~~~ 232 (242)
T PRK11124 229 TQPQ 232 (242)
T ss_pred cCcc
Confidence 6543
No 160
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.2e-45 Score=370.09 Aligned_cols=219 Identities=32% Similarity=0.494 Sum_probs=182.7
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~--~~~~ 430 (604)
+.++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 2 ~~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 80 (250)
T PRK14240 2 GKISVKDLDLFYGD-FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDVN 80 (250)
T ss_pred CeEEEEEEEEEECC-ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccchH
Confidence 35899999999975 4799999999999999999999999999999999999863 68999999999864 3455
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCC--CC-C----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRP--DA-S----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~-~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.+|+.++|++|++.+|+.|++||+.++.. .. + ++++.++++..++.+ ++.........+||
T Consensus 81 ~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~l~~~~~~~~~~LS 148 (250)
T PRK14240 81 QLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWD------------EVKDRLKKSALGLS 148 (250)
T ss_pred HHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCch------------hhHHHHhcCCCCCC
Confidence 67889999999999998999999987631 11 1 122222333332221 12223445667999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 582 (604)
||||||++|||||+.+|+++||||||++||+.+...+.+.+++..+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 149 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~ 228 (250)
T PRK14240 149 GGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGD 228 (250)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988778999999999998755 99999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
++++...
T Consensus 229 ~~~~~~~ 235 (250)
T PRK14240 229 TVDLFTN 235 (250)
T ss_pred HHHHHhC
Confidence 9998754
No 161
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.4e-45 Score=371.54 Aligned_cols=219 Identities=30% Similarity=0.425 Sum_probs=182.2
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCCCC--HH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISNVS--QE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~~~--~~ 430 (604)
..++++|+++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++| ++|+|.++|.++...+ ..
T Consensus 11 ~~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 89 (258)
T PRK14268 11 PQIKVENLNLWYGE-KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDVV 89 (258)
T ss_pred eeEEEeeeEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchHH
Confidence 36999999999974 5699999999999999999999999999999999999985 7999999999986432 34
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCC--CCCHHH----HHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRP--DASECE----LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~~~~~----i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
.+++.++|++|++.+|+.|++||+.++.. ..+.++ +.++++..++.+ ............|||
T Consensus 90 ~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~~~~~~LSg 157 (258)
T PRK14268 90 ELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWD------------ETSDRLKSPALSLSG 157 (258)
T ss_pred HHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCc------------chhhhhcCChhhCCH
Confidence 56788999999999999999999987531 122222 222222222211 112334456678999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++
T Consensus 158 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 237 (258)
T PRK14268 158 GQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQT 237 (258)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999988768999999999998754 999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++.+.
T Consensus 238 ~~~~~~ 243 (258)
T PRK14268 238 RQIFHN 243 (258)
T ss_pred HHHhcC
Confidence 998754
No 162
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=4.4e-45 Score=372.94 Aligned_cols=220 Identities=32% Similarity=0.515 Sum_probs=185.1
Q ss_pred eEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 359 KIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
.++++|+++.|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 7 ~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 86 (269)
T PRK13648 7 IIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHIG 86 (269)
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhee
Confidence 58999999999753 46999999999999999999999999999999999999999999999999998888788899999
Q ss_pred EEcccCc-CC-cccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDTS-LL-HRSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~~-lf-~~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|++|++. +| ..|+++|+.++... .+.++..+. +.+.++.+ |+.........+||||||||++||
T Consensus 87 ~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 87 IVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRR-----VSEALKQV-------DMLERADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred EEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc-------CCchhhhCCcccCCHHHHHHHHHH
Confidence 9999985 44 56899999886321 222221111 11222221 444444556679999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
||++.+|+++||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+..
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 233 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHA 233 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcCH
Confidence 999999999999999999999999999999988753 78999999999988889999999999999999999987653
No 163
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=100.00 E-value=1.2e-44 Score=378.40 Aligned_cols=225 Identities=27% Similarity=0.418 Sum_probs=185.9
Q ss_pred eEEEEEEEEEeCC------------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC
Q psy13349 359 KIFFKNVSFSYDQ------------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN 426 (604)
Q Consensus 359 ~i~~~~vsf~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~ 426 (604)
-++++|++++|+. ..++++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 5899999999963 2469999999999999999999999999999999999999999999999999988
Q ss_pred CCHH---HHhccceEEcccC--cCCc-ccHHHHHhcCC----CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-ccc
Q psy13349 427 VSQE---SLREQIGMVTQDT--SLLH-RSIRDNILYGR----PDASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHV 495 (604)
Q Consensus 427 ~~~~---~~r~~i~~v~Q~~--~lf~-~ti~eNi~~g~----~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v 495 (604)
++.. .+|++++||+|+| .+++ .|+.||+.++. +..+.++..+.+ .+.++.+ |++ ...
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~-----~~~l~~v-------gl~~~~~ 155 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRV-----KAMMLKV-------GLLPNLI 155 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHc-------CCChHHh
Confidence 8754 3578899999998 4774 59999987531 123333332221 1222221 442 234
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEE
Q psy13349 496 GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVL 572 (604)
Q Consensus 496 ~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl 572 (604)
.....+||||||||++|||||+.+|++||+||||++||+.++..+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|
T Consensus 156 ~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl 235 (331)
T PRK15079 156 NRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVM 235 (331)
T ss_pred cCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE
Confidence 556679999999999999999999999999999999999999999999988753 7899999999999875 9999999
Q ss_pred eCCEEeEecChhHHhhc-CcHHHH
Q psy13349 573 DNGCVAEEGSHLDLLKK-NGLYSR 595 (604)
Q Consensus 573 ~~G~iv~~g~~~~l~~~-~~~y~~ 595 (604)
++|+|+|.|+++++.++ ...|.+
T Consensus 236 ~~G~ive~g~~~~i~~~~~~py~~ 259 (331)
T PRK15079 236 YLGHAVELGTYDEVYHNPLHPYTK 259 (331)
T ss_pred ECCEEEEEcCHHHHHcCCCCHHHH
Confidence 99999999999999865 334654
No 164
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.9e-45 Score=366.17 Aligned_cols=218 Identities=28% Similarity=0.466 Sum_probs=185.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~ 437 (604)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.++
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 81 (241)
T PRK10895 3 TLTAKNLAKAYKG-RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIG 81 (241)
T ss_pred eEEEeCcEEEeCC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCeE
Confidence 4789999999975 57999999999999999999999999999999999999999999999999998777544 578899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|+||++.+|+. |++||+.++.. ..+.++. ...++++++.+ |++.........|||||+||++||
T Consensus 82 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~-----~~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv~la 149 (241)
T PRK10895 82 YLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQR-----EDRANELMEEF-------HIEHLRDSMGQSLSGGERRRVEIA 149 (241)
T ss_pred EeccCCcccccCcHHHHHhhhhhcccccCHHHH-----HHHHHHHHHHc-------CCHHHhhcchhhCCHHHHHHHHHH
Confidence 99999999875 99999987531 1121111 11223444433 566666677789999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||++++|++|||||||++||+.+.+.+.+.+.+.. +++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 150 RALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999999999999998765 4789999999997664 5899999999999999999998753
No 165
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=100.00 E-value=6.7e-45 Score=369.24 Aligned_cols=219 Identities=30% Similarity=0.467 Sum_probs=183.8
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC----------
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV---------- 427 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~---------- 427 (604)
+.++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 82 (257)
T PRK10619 4 NKLNVIDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLKVA 82 (257)
T ss_pred ccEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccccc
Confidence 56999999999975 5699999999999999999999999999999999999999999999999988542
Q ss_pred ---CHHHHhccceEEcccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc-ccCC
Q psy13349 428 ---SQESLREQIGMVTQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV-GEHG 499 (604)
Q Consensus 428 ---~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v-~e~g 499 (604)
....+++.++|+||++.+|+. |++||+.++.. .....+..+ .+.++++.+ |+.... ....
T Consensus 83 ~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~ 150 (257)
T PRK10619 83 DKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARE-----RAVKYLAKV-------GIDERAQGKYP 150 (257)
T ss_pred cchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHH-----HHHHHHHHc-------CCChhhhhCCc
Confidence 134667899999999999975 99999986421 112111111 112333322 555543 5667
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
..||||||||++|||||+++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++
T Consensus 151 ~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i 230 (257)
T PRK10619 151 VHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 230 (257)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEE
Confidence 8999999999999999999999999999999999999999999998875 48999999999999886 899999999999
Q ss_pred eEecChhHHhhc
Q psy13349 578 AEEGSHLDLLKK 589 (604)
Q Consensus 578 v~~g~~~~l~~~ 589 (604)
++.|+++++.+.
T Consensus 231 ~~~~~~~~~~~~ 242 (257)
T PRK10619 231 EEEGAPEQLFGN 242 (257)
T ss_pred EEeCCHHHhhhC
Confidence 999999998754
No 166
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-45 Score=371.59 Aligned_cols=219 Identities=29% Similarity=0.431 Sum_probs=183.5
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~--~~~~ 430 (604)
..++++|+++.|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 23 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 101 (271)
T PRK14238 23 VVFDTQNLNLWYGE-DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSVE 101 (271)
T ss_pred eEEEEeeeEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccHH
Confidence 35999999999975 469999999999999999999999999999999999987 699999999999853 3456
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCC--CCCHHH-----HHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRP--DASECE-----LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~~~~~-----i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.+++.++|+||++.+|..|++||+.++.. ..++++ +.++++..++. + ++.......+..||
T Consensus 102 ~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~-----~l~~~~~~~~~~LS 169 (271)
T PRK14238 102 ELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------D-----ELKDRLHDNAYGLS 169 (271)
T ss_pred HHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------c-----hHHHHHhcCcccCC
Confidence 67889999999999998899999987532 122111 11112211111 1 23334456678999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
||||||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 170 gGe~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~ 249 (271)
T PRK14238 170 GGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDD 249 (271)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999999998877899999999999876 499999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
++++.+.
T Consensus 250 ~~~~~~~ 256 (271)
T PRK14238 250 TDKIFSN 256 (271)
T ss_pred HHHHHcC
Confidence 9998764
No 167
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.6e-45 Score=371.63 Aligned_cols=220 Identities=27% Similarity=0.390 Sum_probs=184.9
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCH
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN--VSQ 429 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~--~~~ 429 (604)
...++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.+||.++.. .+.
T Consensus 18 ~~~l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 96 (267)
T PRK14237 18 EIALSTKDLHVYYGK-KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEINV 96 (267)
T ss_pred CeEEEEeeEEEEECC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCCh
Confidence 346999999999964 579999999999999999999999999999999999997 579999999999864 335
Q ss_pred HHHhccceEEcccCcCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 430 ESLREQIGMVTQDTSLLHRSIRDNILYGRPD--A-SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 430 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
..+|+.++|+||++.+|+.|++||+.++... . ++ +++.++++..++.+ ++++..+.....|
T Consensus 97 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~i~~~~~~~~~~L 164 (267)
T PRK14237 97 YEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWD------------QVKDDLHKSALTL 164 (267)
T ss_pred HHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCc------------hhhhhhcCCcccC
Confidence 5678899999999999989999999885321 1 11 12222233333221 1223455677899
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEec
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g 581 (604)
||||+||++||||++++|+++||||||++||+.+...+.+.|++..++.|+|++||+++.+. .||++++|++|++++.|
T Consensus 165 S~G~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 165 SGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999998877899999999999874 59999999999999999
Q ss_pred ChhHHhhc
Q psy13349 582 SHLDLLKK 589 (604)
Q Consensus 582 ~~~~l~~~ 589 (604)
+++++.+.
T Consensus 245 ~~~~~~~~ 252 (267)
T PRK14237 245 KTRNIFTN 252 (267)
T ss_pred CHHHHhcC
Confidence 99998764
No 168
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=100.00 E-value=2e-45 Score=362.02 Aligned_cols=204 Identities=34% Similarity=0.574 Sum_probs=171.4
Q ss_pred EEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 361 FFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 361 ~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGLV 80 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceEE
Confidence 378999999752 5699999999999999999999999999999999999999999999999999877777888999999
Q ss_pred cccCc--CCcccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 440 TQDTS--LLHRSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 440 ~Q~~~--lf~~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
+|++. +++.|++||+.++... .+..+..+ .+.+.++.+ |++.........||||||||++||||
T Consensus 81 ~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 81 FQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEE-----RVEEALELV-------GLEGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred ecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CcHhhhcCCcccCCHHHHHHHHHHHH
Confidence 99984 5678999999875321 12211111 112222222 55555556677999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCE
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGC 576 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~ 576 (604)
|+++|+++||||||++||+.+.+.+.+.|.+.. +++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999998875 47899999999999877 99999999985
No 169
>PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=7.5e-45 Score=374.32 Aligned_cols=219 Identities=28% Similarity=0.463 Sum_probs=182.9
Q ss_pred eEEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHH
Q psy13349 359 KIFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV----SQE 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~----~~~ 430 (604)
.++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 37899999999742 4699999999999999999999999999999999999999999999999998653 245
Q ss_pred HHhccceEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChh
Q psy13349 431 SLREQIGMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGG 505 (604)
Q Consensus 431 ~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgG 505 (604)
..++.++|++|+| .+|+.|++||+.++.. ..+.++..+ .+.++++.+ |++ ........+||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gL~~~~~~~~~~~LSgG 149 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKE-----KALKWLKKV-------GLSEDLISKSPFELSGG 149 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CCChhHhhCCcccCCHH
Confidence 6778999999998 5777899999987532 222222211 112233322 665 3445667899999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
||||++|||||+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+. .||++++|++|++++.|++
T Consensus 150 q~qrl~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~ 229 (287)
T PRK13641 150 QMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASP 229 (287)
T ss_pred HHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999998875 4789999999999875 5999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++.+.
T Consensus 230 ~~~~~~ 235 (287)
T PRK13641 230 KEIFSD 235 (287)
T ss_pred HHHhcC
Confidence 987654
No 170
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.9e-45 Score=373.10 Aligned_cols=220 Identities=30% Similarity=0.425 Sum_probs=185.0
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCH
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISN--VSQ 429 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~--~~~ 429 (604)
.+.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 23 ~~~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~~~ 101 (272)
T PRK14236 23 QTALEVRNLNLFYGD-KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKVDV 101 (272)
T ss_pred CcEEEEEEEEEEECC-eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECcccccCH
Confidence 346999999999975 4799999999999999999999999999999999999984 89999999999864 345
Q ss_pred HHHhccceEEcccCcCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 430 ESLREQIGMVTQDTSLLHRSIRDNILYGRP--DA-SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 430 ~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~-~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
..+|+.++|++|++.+|+.|++||+.++.. .. .. +++.++++..++.+. +.+..+..+..|
T Consensus 102 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------~~~~~~~~~~~L 169 (272)
T PRK14236 102 AELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDE------------VKDRLHENAFGL 169 (272)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChh------------HHHHhhCCcccC
Confidence 577889999999999998899999987532 11 11 123333333332221 123445667899
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEec
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g 581 (604)
|||||||++|||||+++|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 170 S~Gq~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 170 SGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred CHHHHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999999999999999998877799999999999875 59999999999999999
Q ss_pred ChhHHhhc
Q psy13349 582 SHLDLLKK 589 (604)
Q Consensus 582 ~~~~l~~~ 589 (604)
+++++.+.
T Consensus 250 ~~~~~~~~ 257 (272)
T PRK14236 250 DTDTLFTS 257 (272)
T ss_pred CHHHHhcC
Confidence 99998764
No 171
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.1e-45 Score=372.29 Aligned_cols=218 Identities=29% Similarity=0.392 Sum_probs=181.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN--VSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~--~~~~~ 431 (604)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+...
T Consensus 21 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 99 (268)
T PRK14248 21 ILEVKDLSIYYGE-KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINVVN 99 (268)
T ss_pred eEEEEEEEEEeCC-ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccHHH
Confidence 5899999999974 569999999999999999999999999999999999864 789999999999864 33456
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCCC---CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPDA---SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~---~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+++.++|++|++.+|+.|++||+.++.... .. +.+.++++..++.+ ++....+....+|||
T Consensus 100 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~~~~~~LSg 167 (268)
T PRK14248 100 LRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWD------------EVKDRLHSSALSLSG 167 (268)
T ss_pred HhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCc------------chHHHHhcCcccCCH
Confidence 788999999999999899999998752111 11 11222222222110 112334566779999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+.+|+++||||||++||+.+...+.+.++++.+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 168 Gq~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~ 247 (268)
T PRK14248 168 GQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQT 247 (268)
T ss_pred HHHHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998876789999999999775 5999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++.+.
T Consensus 248 ~~~~~~ 253 (268)
T PRK14248 248 EQIFTS 253 (268)
T ss_pred HHHHhC
Confidence 998764
No 172
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.4e-45 Score=369.54 Aligned_cols=218 Identities=30% Similarity=0.420 Sum_probs=181.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEECCEeCCCC--CHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD--I---KYGEILIDGQNISNV--SQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~I~i~g~~~~~~--~~~~ 431 (604)
.++++||+++|++ +++++|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +...
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14239 5 ILQVSDLSVYYNK-KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDTVD 83 (252)
T ss_pred eEEEEeeEEEECC-eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccchHh
Confidence 5899999999975 469999999999999999999999999999999999953 6 489999999998643 3456
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRP--DA-SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~-~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+|+.++|+||++.+|+.|++||+.++.. .. .+ +++.++++..++.+ ++.+..+....+|||
T Consensus 84 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~~~~~~LS~ 151 (252)
T PRK14239 84 LRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWD------------EVKDRLHDSALGLSG 151 (252)
T ss_pred hhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCch------------hHHHHHhcCcccCCH
Confidence 7889999999999999999999987521 11 11 12222233332211 122334566779999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++||||++.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 152 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 231 (252)
T PRK14239 152 GQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDT 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998766799999999999865 5999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++.+.
T Consensus 232 ~~~~~~ 237 (252)
T PRK14239 232 KQMFMN 237 (252)
T ss_pred HHHHhC
Confidence 998764
No 173
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.5e-45 Score=367.62 Aligned_cols=218 Identities=29% Similarity=0.457 Sum_probs=183.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEECCEeCCCC--CHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----YGEILIDGQNISNV--SQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~I~i~g~~~~~~--~~~~ 431 (604)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +...
T Consensus 4 ~l~~~~l~~~~~~-~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 82 (251)
T PRK14249 4 KIKIRGVNFFYHK-HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDVVN 82 (251)
T ss_pred eEEEEEEEEEECC-eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccChHH
Confidence 5899999999975 56999999999999999999999999999999999999997 69999999998643 3457
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCC--CC-HH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPD--AS-EC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~-~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+|+.++|+||++.+|+.|++||+.++... .. .+ ++.++++..++.+ ++.+.....+.+|||
T Consensus 83 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~l~~~~~~~~~~LS~ 150 (251)
T PRK14249 83 LRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWD------------EVKDNLHKSGLALSG 150 (251)
T ss_pred hhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCch------------hhhhHhhCCcccCCH
Confidence 78899999999999988999999876321 11 11 1222222222221 123345567789999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 151 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~ 230 (251)
T PRK14249 151 GQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRT 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCH
Confidence 9999999999999999999999999999999999999999887667999999999998766 799999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++...
T Consensus 231 ~~~~~~ 236 (251)
T PRK14249 231 GEIFSR 236 (251)
T ss_pred HHHHhC
Confidence 998654
No 174
>PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1e-44 Score=373.95 Aligned_cols=220 Identities=28% Similarity=0.454 Sum_probs=181.4
Q ss_pred ceEEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC----C-C
Q psy13349 358 GKIFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN----V-S 428 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~----~-~ 428 (604)
+.++++|++++|++. .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . +
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 579999999999753 259999999999999999999999999999999999999999999999998852 2 3
Q ss_pred HHHHhccceEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCC
Q psy13349 429 QESLREQIGMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLS 503 (604)
Q Consensus 429 ~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LS 503 (604)
...+|+.++|++|++ .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |+. ........+||
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~ll~~~-------~L~~~~~~~~~~~LS 152 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKK-----VPELLKLV-------QLPEDYVKRSPFELS 152 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc-------CCChhHhcCChhhCC
Confidence 466788999999998 4677899999987632 1222222111 11222211 442 33456677999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEe
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEE 580 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~ 580 (604)
||||||++|||||+.+|++|||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.
T Consensus 153 ~Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~ 232 (289)
T PRK13645 153 GGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISI 232 (289)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 999999999999999999999999999999999999999998875 3789999999999875 5899999999999999
Q ss_pred cChhHHhhc
Q psy13349 581 GSHLDLLKK 589 (604)
Q Consensus 581 g~~~~l~~~ 589 (604)
|+++++.+.
T Consensus 233 g~~~~~~~~ 241 (289)
T PRK13645 233 GSPFEIFSN 241 (289)
T ss_pred CCHHHHhcC
Confidence 999887643
No 175
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.3e-45 Score=367.15 Aligned_cols=219 Identities=25% Similarity=0.388 Sum_probs=182.3
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEECCEeCCCC--CHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD--I---KYGEILIDGQNISNV--SQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~I~i~g~~~~~~--~~~ 430 (604)
+.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +..
T Consensus 3 ~~l~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~ 81 (252)
T PRK14256 3 NKVKLEQLNVHFGK-NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPV 81 (252)
T ss_pred cEEEEEEEEEEeCC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCChH
Confidence 56999999999974 579999999999999999999999999999999999986 4 689999999998643 345
Q ss_pred HHhccceEEcccCcCCc-ccHHHHHhcCCC--C-CCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLH-RSIRDNILYGRP--D-ASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~-~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
.+|+.++|+||++.+|. .|++||+.++.. . .+. +++.++++..++.+++ ....+....+|
T Consensus 82 ~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------~~~~~~~~~~L 149 (252)
T PRK14256 82 SIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEV------------KDRLKSNAMEL 149 (252)
T ss_pred HhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh------------hHHhhCCcCcC
Confidence 67889999999999997 599999987421 1 111 1223333333332211 12334557799
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEec
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g 581 (604)
|||||||++||||++.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|
T Consensus 150 S~G~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 150 SGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999998877789999999999875 59999999999999999
Q ss_pred ChhHHhhc
Q psy13349 582 SHLDLLKK 589 (604)
Q Consensus 582 ~~~~l~~~ 589 (604)
+++++...
T Consensus 230 ~~~~~~~~ 237 (252)
T PRK14256 230 ETKKIFTT 237 (252)
T ss_pred CHHHHHhC
Confidence 99998754
No 176
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-45 Score=372.75 Aligned_cols=218 Identities=25% Similarity=0.371 Sum_probs=179.5
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhccce
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS--NVSQESLREQIG 437 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~--~~~~~~~r~~i~ 437 (604)
++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.++
T Consensus 2 l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~i~ 80 (271)
T PRK13638 2 LATSDLWFRYQD-EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQVA 80 (271)
T ss_pred eEEEEEEEEcCC-cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhheE
Confidence 689999999975 56999999999999999999999999999999999999999999999999985 233456788999
Q ss_pred EEcccCc--CCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDTS--LLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~~--lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|++|++. +|..|+.||+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++||
T Consensus 81 ~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrl~la 148 (271)
T PRK13638 81 TVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRR-----VDEALTLV-------DAQHFRHQPIQCLSHGQKKRVAIA 148 (271)
T ss_pred EEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc-------CCHhHhcCCchhCCHHHHHHHHHH
Confidence 9999986 567789999987421 1222222111 11222221 333333445678999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
|||+.+|+++||||||++||+.+...+.+.|++.. +++|+|+|||+++.+. .||++++|++|++++.|+++++.+..
T Consensus 149 raL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 227 (271)
T PRK13638 149 GALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFACT 227 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCh
Confidence 99999999999999999999999999999998875 4789999999999885 59999999999999999999886543
No 177
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=100.00 E-value=9.3e-45 Score=376.51 Aligned_cols=217 Identities=32% Similarity=0.469 Sum_probs=181.1
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...+|+.++|
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~ 81 (303)
T TIGR01288 4 AIDLVGVSKSYGD-KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAIGV 81 (303)
T ss_pred EEEEEeEEEEeCC-eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcEEE
Confidence 5899999999975 5699999999999999999999999999999999999999999999999998653 3567889999
Q ss_pred EcccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
+||++.+|+ .|++||+.+... ..+..+..+.+ .+.++.+ |+.........+||||||||++||||
T Consensus 82 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~-------~l~~~~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 82 VPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA-------RLESKADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred EeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHC-------CChhHhcCchhhCCHHHHHHHHHHHH
Confidence 999999885 599999975321 12322222211 1222211 44433444556899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|+.+|+++||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999998875 47899999999998865 999999999999999999998754
No 178
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=369.18 Aligned_cols=215 Identities=27% Similarity=0.438 Sum_probs=184.2
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 6 ~~l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (265)
T PRK10253 6 ARLRGEQLTLGYGK-YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIG 84 (265)
T ss_pred cEEEEEEEEEEECC-EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhheE
Confidence 46999999999975 56999999999999999999999999999999999999999999999999998888778888999
Q ss_pred EEcccCcCCc-ccHHHHHhcCC-CC------CCH---HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 438 MVTQDTSLLH-RSIRDNILYGR-PD------ASE---CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 438 ~v~Q~~~lf~-~ti~eNi~~g~-~~------~~~---~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
|+||++.+|. .|++||+.++. +. ..+ +++.++++.. |++.........|||||
T Consensus 85 ~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~Gq 148 (265)
T PRK10253 85 LLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQAT----------------GITHLADQSVDTLSGGQ 148 (265)
T ss_pred EeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc----------------CCHHHhcCCcccCChHH
Confidence 9999999875 59999998753 11 011 1222222222 44444555677999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||++||||++++|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 149 ~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~ 228 (265)
T PRK10253 149 RQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAP 228 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999988753 789999999999765 5999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++...
T Consensus 229 ~~~~~~ 234 (265)
T PRK10253 229 KEIVTA 234 (265)
T ss_pred HHHhhH
Confidence 988653
No 179
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.9e-45 Score=387.69 Aligned_cols=213 Identities=33% Similarity=0.494 Sum_probs=174.9
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----hccceEEcccCcCCcc-
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL----REQIGMVTQDTSLLHR- 448 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~- 448 (604)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ +++++||+|++.+|+.
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 48999999999999999999999999999999999999999999999999988776543 4689999999999965
Q ss_pred cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEe
Q psy13349 449 SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526 (604)
Q Consensus 449 ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililD 526 (604)
|++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||||+.+|++||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~-----~~~e~L~~~-------gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLD 189 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERRE-----KALDALRQV-------GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMD 189 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEE
Confidence 99999997632 112111111 112222222 5555555566789999999999999999999999999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcC--cHHHHHHH
Q psy13349 527 EATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKN--GLYSRLWR 598 (604)
Q Consensus 527 E~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~--~~y~~l~~ 598 (604)
||||+||+.+.+.+++.|.++. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.. ...+.++.
T Consensus 190 EPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v~~~~~ 266 (400)
T PRK10070 190 EAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVRTFFR 266 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHHHHHHh
Confidence 9999999999999999998874 4789999999999875 58999999999999999999987653 23344443
No 180
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.2e-45 Score=373.38 Aligned_cols=218 Identities=28% Similarity=0.475 Sum_probs=181.1
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhccce
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN--VSQESLREQIG 437 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~--~~~~~~r~~i~ 437 (604)
++++||+++|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.|+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 81 (275)
T PRK13639 2 LETRDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKTVG 81 (275)
T ss_pred EEEEEEEEEeCCCCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhheE
Confidence 6899999999754569999999999999999999999999999999999999999999999999852 23456788999
Q ss_pred EEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|++|++ .+|+.|++||+.++.. ..+.++..+. +.+.++.+ |+.........+|||||+||++||
T Consensus 82 ~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~L~~~~~~~~~~LS~Gq~qrv~la 149 (275)
T PRK13639 82 IVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKR-----VKEALKAV-------GMEGFENKPPHHLSGGQKKRVAIA 149 (275)
T ss_pred EEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC-------CCchhhcCChhhCCHHHHHHHHHH
Confidence 999997 4788899999987532 1222221111 11222221 443334455678999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||++.+|+++||||||++||+.+...+.+.+.++. +++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 150 ral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 150 GILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998875 4799999999999876 5999999999999999999998753
No 181
>PRK10908 cell division protein FtsE; Provisional
Probab=100.00 E-value=7.1e-45 Score=361.05 Aligned_cols=208 Identities=31% Similarity=0.467 Sum_probs=172.8
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHhccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---SLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~---~~r~~i 436 (604)
++++|+++.|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+.+
T Consensus 2 l~~~~l~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~i 81 (222)
T PRK10908 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQI 81 (222)
T ss_pred EEEEeeEEEecCCCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHhhe
Confidence 68999999995445799999999999999999999999999999999999999999999999999876543 367899
Q ss_pred eEEcccCcCC-cccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 437 GMVTQDTSLL-HRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 437 ~~v~Q~~~lf-~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
+|++|++.+| ..|++||+.++.. ..++++..+.+ .++++.+ |+.........+||||||||++||
T Consensus 82 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~-----~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv~la 149 (222)
T PRK10908 82 GMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRV-----SAALDKV-------GLLDKAKNFPIQLSGGEQQRVGIA 149 (222)
T ss_pred EEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHH-----HHHHHHc-------CChhhhhCCchhCCHHHHHHHHHH
Confidence 9999999875 5699999987521 22332222111 1222221 444444455678999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeE
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAE 579 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~ 579 (604)
||++.+|+++||||||++||+.+.+.+.+.+.+.. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 150 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 150 RAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 99999999999999999999999999999998875 47899999999999876 89999999999863
No 182
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=100.00 E-value=7e-45 Score=361.77 Aligned_cols=212 Identities=25% Similarity=0.378 Sum_probs=181.0
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++||++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 6 ~~i~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 84 (225)
T PRK10247 6 PLLQLQNVGYLAGD-AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84 (225)
T ss_pred ceEEEeccEEeeCC-ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhccE
Confidence 35899999999974 57999999999999999999999999999999999999999999999999998888877888999
Q ss_pred EEcccCcCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTSLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq~QrialAR 514 (604)
|++|++.+|+.|++||+.++.. ....++ ..+.+.++.+ |+. +.......+|||||+||++|||
T Consensus 85 ~~~q~~~l~~~tv~enl~~~~~~~~~~~~~-------~~~~~~l~~~-------~l~~~~~~~~~~~LS~G~~qrv~lar 150 (225)
T PRK10247 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDP-------AIFLDDLERF-------ALPDTILTKNIAELSGGEKQRISLIR 150 (225)
T ss_pred EEecccccccccHHHHHHhHHhhcCCChHH-------HHHHHHHHHc-------CCChHHhcCCcccCCHHHHHHHHHHH
Confidence 9999999998899999986421 011110 0112233332 553 4556777899999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEE-eCCEEeEecChh
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVL-DNGCVAEEGSHL 584 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl-~~G~iv~~g~~~ 584 (604)
||+++|+++||||||++||+.+.+.+.+.+.+.. .++|+|++||+++.++.||++++| +++..+++|+|+
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 9999999999999999999999999999998875 378999999999999889999999 477778999986
No 183
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=366.99 Aligned_cols=223 Identities=24% Similarity=0.426 Sum_probs=185.1
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL-REQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~-r~~i~ 437 (604)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..++
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 83 (255)
T PRK11300 5 LLSVSGLMMRFGG-LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMGVV 83 (255)
T ss_pred eEEEeeEEEEECC-EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcCeE
Confidence 5899999999974 579999999999999999999999999999999999999999999999999988776554 45699
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCCCCHHH----H------H--HHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPDASECE----L------F--NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~----i------~--~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
|++|++.+|+. |++||+.++.....+.+ + . .........++++.+ |++........+|||
T Consensus 84 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------gl~~~~~~~~~~LS~ 156 (255)
T PRK11300 84 RTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV-------GLLEHANRQAGNLAY 156 (255)
T ss_pred EeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC-------ChhhhhhCChhhCCH
Confidence 99999999976 99999998632110000 0 0 000001122333322 676677778889999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
|||||++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 157 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 236 (255)
T PRK11300 157 GQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANG 236 (255)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecC
Confidence 999999999999999999999999999999999999999988753 7899999999999855 9999999999999999
Q ss_pred ChhHHhhc
Q psy13349 582 SHLDLLKK 589 (604)
Q Consensus 582 ~~~~l~~~ 589 (604)
+++++.+.
T Consensus 237 ~~~~~~~~ 244 (255)
T PRK11300 237 TPEEIRNN 244 (255)
T ss_pred CHHHHhhC
Confidence 99988653
No 184
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=100.00 E-value=9.2e-45 Score=367.17 Aligned_cols=205 Identities=31% Similarity=0.469 Sum_probs=175.3
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++
T Consensus 11 ~~l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i~ 84 (257)
T PRK11247 11 TPLLLNAVSKRYGE-RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDTR 84 (257)
T ss_pred CcEEEEEEEEEECC-cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCceE
Confidence 35999999999975 57999999999999999999999999999999999999999999999998753 4678899
Q ss_pred EEcccCcCCc-ccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 438 MVTQDTSLLH-RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 438 ~v~Q~~~lf~-~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
|++|++.+|+ .|++||+.++.....++++.++++.. |+.........+||||||||++|||||
T Consensus 85 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~----------------gl~~~~~~~~~~LSgGqkqrl~laraL 148 (257)
T PRK11247 85 LMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV----------------GLADRANEWPAALSGGQKQRVALARAL 148 (257)
T ss_pred EEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc----------------CChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999999987 59999998864221222333333333 454445566679999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChh
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~ 584 (604)
+++|+++||||||++||+.+...+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|+.+
T Consensus 149 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 149 IHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred hcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 99999999999999999999999999998864 3789999999999875 59999999999999988754
No 185
>PRK14244 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-45 Score=369.95 Aligned_cols=217 Identities=30% Similarity=0.426 Sum_probs=180.2
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCCCC--HHHH
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISNVS--QESL 432 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~~~--~~~~ 432 (604)
-+++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...+
T Consensus 6 ~~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~~ 84 (251)
T PRK14244 6 ASVKNLNLWYGS-KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVVLL 84 (251)
T ss_pred EEeeeEEEEECC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchHHH
Confidence 468999999974 579999999999999999999999999999999999986 47999999999886543 2357
Q ss_pred hccceEEcccCcCCcccHHHHHhcCCC--CC--CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 433 REQIGMVTQDTSLLHRSIRDNILYGRP--DA--SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~--~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
|+.++|+||++.+|+.|++||+.++.. +. .. +++.++++..++.++ +.+.++..+.+|||
T Consensus 85 ~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------~~~~~~~~~~~LS~ 152 (251)
T PRK14244 85 RAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE------------LGDRLKDSAFELSG 152 (251)
T ss_pred hhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCch------------hhhHhhcChhhCCH
Confidence 889999999999998999999987521 11 11 112222222222111 12234556779999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+++|+++||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 153 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~ 232 (251)
T PRK14244 153 GQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTT 232 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999888778999999999998764 999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++.+.
T Consensus 233 ~~~~~~ 238 (251)
T PRK14244 233 QEIFKN 238 (251)
T ss_pred HHHhcC
Confidence 998765
No 186
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=100.00 E-value=1e-44 Score=358.96 Aligned_cols=210 Identities=28% Similarity=0.416 Sum_probs=185.4
Q ss_pred EEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHHhccc
Q psy13349 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ----ESLREQI 436 (604)
Q Consensus 361 ~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~----~~~r~~i 436 (604)
.+.|++|+|+++.++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...|+.+
T Consensus 2 ~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 81 (218)
T cd03290 2 QVTNGYFSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYSV 81 (218)
T ss_pred eeeeeEEecCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcceE
Confidence 578999999866679999999999999999999999999999999999999999999999998866542 3456789
Q ss_pred eEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 437 GMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 437 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+|++|++.+|+.|++||+.++.+ .++++..++++..++.+.+..+|. |+++.++....+||||||||++||||+
T Consensus 82 ~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~LS~G~~qrv~laral 155 (218)
T cd03290 82 AYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPF-----GDQTEIGERGINLSGGQRQRICVARAL 155 (218)
T ss_pred EEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcC-----ccccCcccCCCcCCHHHHHHHHHHHHH
Confidence 99999999998899999998754 345556677777788788887887 999999988999999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHH--HHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCE
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQK--SLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGC 576 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~--~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~ 576 (604)
+++|+++||||||++||+.+...+.+ .++... .++|+|++||+.+.+..||++++|++|.
T Consensus 156 ~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 156 YQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred hhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999999999987 444443 3689999999999998899999999884
No 187
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.1e-44 Score=366.32 Aligned_cols=226 Identities=28% Similarity=0.399 Sum_probs=185.5
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISNV--SQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~~--~~~~ 431 (604)
.++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +...
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~~~ 81 (250)
T PRK14262 3 IIEIENFSAYYGE-KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDVTE 81 (250)
T ss_pred eEEEEeeEEEeCC-ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhHHH
Confidence 4899999999974 5799999999999999999999999999999999999984 899999999988653 2346
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCC--C-CCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRP--D-ASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~-~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+++.++|++|++.+|+.|++||+.++.. . ..+ +++.++++..++.+. +++..+....+|||
T Consensus 82 ~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------~~~~~~~~~~~LS~ 149 (250)
T PRK14262 82 YRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDE------------VKSELNKPGTRLSG 149 (250)
T ss_pred hhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCch------------hHHHHhCChhhcCH
Confidence 7889999999999999999999987531 1 111 122223333332211 12234566789999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+++|+++||||||++||+.+...+.+.|.+..+++|+|++||+++.+. .||+|++|++|++++.|++
T Consensus 150 Gq~qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~ 229 (250)
T PRK14262 150 GQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPT 229 (250)
T ss_pred HHHHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999999999999998877899999999999764 5999999999999999999
Q ss_pred hHHhhcC-cHHHHHH
Q psy13349 584 LDLLKKN-GLYSRLW 597 (604)
Q Consensus 584 ~~l~~~~-~~y~~l~ 597 (604)
+++.+.. ..|.+.|
T Consensus 230 ~~~~~~~~~~~~~~~ 244 (250)
T PRK14262 230 REIVERPKNKLTEEY 244 (250)
T ss_pred HHHHhCCCChHHHHH
Confidence 9987653 3355444
No 188
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-45 Score=367.22 Aligned_cols=227 Identities=28% Similarity=0.389 Sum_probs=187.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISNV--SQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~~--~~~~ 431 (604)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++... +...
T Consensus 6 ~i~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 84 (253)
T PRK14261 6 ILSTKNLNLWYGE-KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVVA 84 (253)
T ss_pred eEEEeeeEEEECC-eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccchhh
Confidence 5899999999974 5699999999999999999999999999999999999763 489999999998765 4456
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPD--A-SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
.++.++|++|++.+|+.|++||+.++... . +. +++.++++..++.+ ++.+..++.+.+|||
T Consensus 85 ~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~l~~~~~~~~~~LS~ 152 (253)
T PRK14261 85 LRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD------------EVKDRLHDSALSLSG 152 (253)
T ss_pred hhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch------------hhHHHhhcChhhCCH
Confidence 78889999999999989999999986321 1 11 11222222222211 223445667789999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|++++.|++
T Consensus 153 G~~qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~ 232 (253)
T PRK14261 153 GQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKT 232 (253)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCH
Confidence 999999999999999999999999999999999999999998877799999999999886 5999999999999999999
Q ss_pred hHHhhcC-cHHHHHHH
Q psy13349 584 LDLLKKN-GLYSRLWR 598 (604)
Q Consensus 584 ~~l~~~~-~~y~~l~~ 598 (604)
+++.... ..+.+.|-
T Consensus 233 ~~~~~~~~~~~~~~~~ 248 (253)
T PRK14261 233 TQIFENPHEELTENYI 248 (253)
T ss_pred HHHHhCCCcHHHHHHh
Confidence 9987643 23555443
No 189
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=1.5e-44 Score=366.61 Aligned_cols=218 Identities=28% Similarity=0.430 Sum_probs=183.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 2 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (258)
T PRK13548 2 MLEARNLSVRLGG-RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRAV 80 (258)
T ss_pred eEEEEeEEEEeCC-eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheEE
Confidence 3789999999975 569999999999999999999999999999999999999999999999999988777778889999
Q ss_pred EcccCcC-CcccHHHHHhcCCCCC--CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSL-LHRSIRDNILYGRPDA--SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~l-f~~ti~eNi~~g~~~~--~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
++|++.+ +..|++||+.++.... +.++... .+.+.++.+ |++.........||||||||++||||
T Consensus 81 ~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 81 LPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDA-----LVAAALAQV-------DLAHLAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EccCCcCCCCCCHHHHHHhhhcccCCCcHHHHH-----HHHHHHHHc-------CCHhHhcCCcccCCHHHHHHHHHHHH
Confidence 9999987 5679999998863211 1111100 111222221 45444555667999999999999999
Q ss_pred Hc------cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHH
Q psy13349 516 IL------KNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 516 ll------~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l 586 (604)
|+ .+|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999998875 4789999999999886 5999999999999999999988
Q ss_pred hhc
Q psy13349 587 LKK 589 (604)
Q Consensus 587 ~~~ 589 (604)
.+.
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 753
No 190
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=100.00 E-value=9e-45 Score=361.78 Aligned_cols=206 Identities=29% Similarity=0.412 Sum_probs=173.3
Q ss_pred eEEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---H
Q psy13349 359 KIFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES---L 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~---~ 432 (604)
.++++|++++|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 58999999999753 35999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hccceEEcccCcCCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 433 -REQIGMVTQDTSLLHR-SIRDNILYGRP--DASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 433 -r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
++.++|++|++.+|+. |++||+.++.. ..+. +++.++++.. |++.........|||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~ 149 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL----------------GLGKRLDHLPAQLSG 149 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------------CCHhHhhCChhhCCH
Confidence 3679999999999875 99999986421 1111 2222333333 343334445568999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-K-GKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~-~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.|++.. + ++|+|++||+++.++.||++++|++|+++++
T Consensus 150 Ge~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 150 GEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999998874 3 7899999999999888999999999999864
No 191
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=367.77 Aligned_cols=218 Identities=28% Similarity=0.409 Sum_probs=183.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN--VSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~--~~~~~ 431 (604)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+...
T Consensus 10 ~l~i~~v~~~~~~-~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 88 (264)
T PRK14243 10 VLRTENLNVYYGS-FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVE 88 (264)
T ss_pred EEEEeeeEEEECC-EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccChHH
Confidence 5899999999975 479999999999999999999999999999999999986 479999999998853 34567
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCC--CC---HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPD--AS---ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~---~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
+++.++|++|++.+|+.|++||+.++... .. ++++.++++.+++.+++. ...+....+|||||
T Consensus 89 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------------~~~~~~~~~LSgGq 156 (264)
T PRK14243 89 VRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK------------DKLKQSGLSLSGGQ 156 (264)
T ss_pred HhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH------------HHhcCCcccCCHHH
Confidence 78899999999999988999999876421 11 122333344444433222 22345667899999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEe---------CCE
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLD---------NGC 576 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~---------~G~ 576 (604)
|||++|||||+++|++|||||||++||+.+...+.+.|.++.+++|+|++||+++.+.. ||||++|+ +|+
T Consensus 157 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~ 236 (264)
T PRK14243 157 QQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGY 236 (264)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCce
Confidence 99999999999999999999999999999999999999988777899999999998654 89999998 899
Q ss_pred EeEecChhHHhhc
Q psy13349 577 VAEEGSHLDLLKK 589 (604)
Q Consensus 577 iv~~g~~~~l~~~ 589 (604)
+++.|+++|+.+.
T Consensus 237 i~~~~~~~~~~~~ 249 (264)
T PRK14243 237 LVEFDRTEKIFNS 249 (264)
T ss_pred EEEeCCHHHHHhC
Confidence 9999999999764
No 192
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=100.00 E-value=1.4e-44 Score=374.59 Aligned_cols=216 Identities=23% Similarity=0.405 Sum_probs=185.3
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+++.++|+
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig~~ 80 (301)
T TIGR03522 3 IRVSSLTKLYGT-QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIGYL 80 (301)
T ss_pred EEEEEEEEEECC-EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceEEe
Confidence 789999999974 569999999999999999999999999999999999999999999999999876 445778899999
Q ss_pred cccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
||++.+|+. |++||+.+... ..+.++..+ ..++.++.+ |++.........||||||||++|||||
T Consensus 81 ~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~LS~G~~qrv~la~al 148 (301)
T TIGR03522 81 PEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ-----RVEEMIELV-------GLRPEQHKKIGQLSKGYRQRVGLAQAL 148 (301)
T ss_pred cCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC-------CCchHhcCchhhCCHHHHHHHHHHHHH
Confidence 999999976 99999976321 112222111 112233322 666666677789999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
+.+|+++||||||++||+.+.+.+++.++++.+++|+|++||+++.++. ||||++|++|+++..|+++++.+.
T Consensus 149 ~~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 149 IHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999999988778999999999998765 999999999999999999998664
No 193
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=100.00 E-value=7e-45 Score=348.68 Aligned_cols=177 Identities=41% Similarity=0.714 Sum_probs=164.8
Q ss_pred EEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 360 IFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~~ 79 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLISV 79 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEEE
Confidence 4789999999764 3699999999999999999999999999999999999999999999999988665 5677889999
Q ss_pred EcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 439 VTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
++|++.+|+.|++||+ ...||||||||++||||+++
T Consensus 80 ~~q~~~~~~~tv~~~i--------------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 80 LNQRPYLFDTTLRNNL--------------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred EccCCeeecccHHHhh--------------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 9999999999999997 24799999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEec
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g 581 (604)
+|+++||||||++||+.+.+.+.+.+++..+++|+|++||+++.++.||++++|++|++++.|
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 999999999999999999999999998877789999999999999999999999999998765
No 194
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-44 Score=366.04 Aligned_cols=218 Identities=32% Similarity=0.415 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISNV--SQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~~--~~~~ 431 (604)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~~ 82 (251)
T PRK14270 4 KMESKNLNLWYGE-KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDVVE 82 (251)
T ss_pred EEEEEEeEEEECC-eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccHHH
Confidence 5899999999974 5699999999999999999999999999999999999875 789999999998653 3356
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPD--A-SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
.++.++|+||++.+|+.|++||+.++... . +. +++.++++.+++.+ ++..........|||
T Consensus 83 ~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~~~~~~~~~~~~LS~ 150 (251)
T PRK14270 83 LRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWD------------EVKDDLKKSALKLSG 150 (251)
T ss_pred HHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCch------------hhhhHhhCCcccCCH
Confidence 78889999999999999999999875311 1 11 12223333333211 122234456779999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++||||++++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. |||+++|++|++++.|++
T Consensus 151 G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~ 230 (251)
T PRK14270 151 GQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKT 230 (251)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999999988767999999999998765 999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++...
T Consensus 231 ~~~~~~ 236 (251)
T PRK14270 231 EKIFLE 236 (251)
T ss_pred HHHhcC
Confidence 998764
No 195
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=8.2e-45 Score=373.51 Aligned_cols=214 Identities=31% Similarity=0.504 Sum_probs=184.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++||++.|++++.+|+||||++++||++|++||||||||||+|+|+|+..|++|+|.++|.+...- ..++++++||
T Consensus 4 ~i~~~~l~k~~~~~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~igy 82 (293)
T COG1131 4 VIEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRIGY 82 (293)
T ss_pred eeeecceEEEeCCCCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhheEE
Confidence 478999999998446799999999999999999999999999999999999999999999999988764 6788999999
Q ss_pred EcccCcCCcc-cHHHHHhcCCC---C---CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP---D---ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~---~---~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
+||+|.+++. |++||+.+... . ..++++.+.++.. |++..-......||+|||||++
T Consensus 83 ~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~----------------~L~~~~~~~~~~lS~G~kqrl~ 146 (293)
T COG1131 83 VPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELF----------------GLEDKANKKVRTLSGGMKQRLS 146 (293)
T ss_pred EccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHc----------------CCchhhCcchhhcCHHHHHHHH
Confidence 9999998866 99999987531 1 1123344444433 3333223446789999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-C-cEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-G-KTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~-~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
||+||+.+|+++||||||++|||.+...+++.|+++.+ + +||+++||.++.++. ||+|++|++|+++..|+.+++.+
T Consensus 147 ia~aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~ 226 (293)
T COG1131 147 IALALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKE 226 (293)
T ss_pred HHHHHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHH
Confidence 99999999999999999999999999999999998874 4 799999999999888 99999999999999999999765
Q ss_pred c
Q psy13349 589 K 589 (604)
Q Consensus 589 ~ 589 (604)
.
T Consensus 227 ~ 227 (293)
T COG1131 227 K 227 (293)
T ss_pred h
Confidence 4
No 196
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=100.00 E-value=3.6e-45 Score=360.86 Aligned_cols=198 Identities=30% Similarity=0.517 Sum_probs=165.0
Q ss_pred EEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEc
Q psy13349 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVT 440 (604)
Q Consensus 361 ~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~ 440 (604)
+++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++.++|++
T Consensus 1 ~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~v~ 74 (213)
T cd03235 1 EVEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGYVP 74 (213)
T ss_pred CcccceeEECC-EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEEec
Confidence 36899999975 56999999999999999999999999999999999999999999999998764 4677899999
Q ss_pred ccCcC---CcccHHHHHhcCCCCC-------C---HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHH
Q psy13349 441 QDTSL---LHRSIRDNILYGRPDA-------S---ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQR 507 (604)
Q Consensus 441 Q~~~l---f~~ti~eNi~~g~~~~-------~---~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~ 507 (604)
|++.+ |+.|++||+.++.... . ++++.++++.. |++........+||||||
T Consensus 75 q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LSgG~~ 138 (213)
T cd03235 75 QRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV----------------GLSELADRQIGELSGGQQ 138 (213)
T ss_pred cccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc----------------CCHHHHhCCcccCCHHHH
Confidence 99976 5679999998764211 1 11222222222 343334445668999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
||++|||||+.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 139 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 139 QRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999998875 57899999999998865 8999999886 55554
No 197
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=100.00 E-value=1.4e-44 Score=366.72 Aligned_cols=221 Identities=29% Similarity=0.428 Sum_probs=182.7
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~~ 80 (256)
T TIGR03873 2 LRLSRVSWSAGG-RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVALV 80 (256)
T ss_pred ceEEeEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheEEe
Confidence 689999999975 5799999999999999999999999999999999999999999999999999888887888899999
Q ss_pred cccCcC-CcccHHHHHhcCCCCCCHH-HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 440 TQDTSL-LHRSIRDNILYGRPDASEC-ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 440 ~Q~~~l-f~~ti~eNi~~g~~~~~~~-~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
+|++.+ +..|++||+.++....... ..........+.+.+..+ |+..........||||||||++||||++
T Consensus 81 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 81 EQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART-------ELSHLADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred cccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc-------CcHhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 999865 4679999998863211000 000000001122223322 4444455567799999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhh
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
.+|+++||||||++||+.+...+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 9999999999999999999999999998875 4789999999999984 599999999999999999998865
No 198
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-44 Score=364.88 Aligned_cols=218 Identities=29% Similarity=0.424 Sum_probs=183.2
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCC-CCCHHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNIS-NVSQESL 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~-~~~~~~~ 432 (604)
.++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+...+
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~~~ 81 (249)
T PRK14253 3 KFNIENLDLFYGE-NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVADL 81 (249)
T ss_pred eEEEeccEEEECC-eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchHHH
Confidence 4889999999974 5799999999999999999999999999999999999986 5999999999985 3456678
Q ss_pred hccceEEcccCcCCcccHHHHHhcCCCC--CC-HH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 433 REQIGMVTQDTSLLHRSIRDNILYGRPD--AS-EC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~-~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
|+.++|++|++.+|+.|++||+.++... .. ++ ++.++++..++.+ ++.+........||||
T Consensus 82 ~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------------~~~~~~~~~~~~LS~G 149 (249)
T PRK14253 82 RIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWD------------EVKDRLKSHAFGLSGG 149 (249)
T ss_pred HhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCch------------hhhHHhhcCcccCCHH
Confidence 8899999999999999999999876321 11 11 1222233232221 1223345566799999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChh
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 584 (604)
|+||++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 150 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~ 229 (249)
T PRK14253 150 QQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQ 229 (249)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999988777999999999998765 8999999999999999999
Q ss_pred HHhhc
Q psy13349 585 DLLKK 589 (604)
Q Consensus 585 ~l~~~ 589 (604)
++.+.
T Consensus 230 ~~~~~ 234 (249)
T PRK14253 230 VIFSN 234 (249)
T ss_pred HHHcC
Confidence 88653
No 199
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=100.00 E-value=2.5e-44 Score=377.15 Aligned_cols=218 Identities=31% Similarity=0.456 Sum_probs=182.0
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++.++
T Consensus 40 ~~i~i~nl~k~y~~-~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~ig 117 (340)
T PRK13536 40 VAIDLAGVSKSYGD-KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARIG 117 (340)
T ss_pred eeEEEEEEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccEE
Confidence 35999999999975 46999999999999999999999999999999999999999999999999987643 56788999
Q ss_pred EEcccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
|+||++.+|. .|++||+.+... ..+.++..+.+ .++++.+ |++........+||||||||++|||
T Consensus 118 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~ll~~~-------~L~~~~~~~~~~LS~G~kqrv~lA~ 185 (340)
T PRK13536 118 VVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVI-----PSLLEFA-------RLESKADARVSDLSGGMKRRLTLAR 185 (340)
T ss_pred EEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc-------CCchhhCCChhhCCHHHHHHHHHHH
Confidence 9999999874 599999986321 12222222111 1222211 3433344445689999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||+.+|+++||||||++||+.+...+++.|+++. +++|+|++||+++.++. ||+|++|++|+++..|+.+++.+.
T Consensus 186 aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 186 ALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999999999998875 47999999999999865 999999999999999999998754
No 200
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=3.3e-45 Score=360.82 Aligned_cols=212 Identities=29% Similarity=0.483 Sum_probs=177.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCE---eCCCCCHHHHhcc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ---NISNVSQESLREQ 435 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~---~~~~~~~~~~r~~ 435 (604)
.|+++|+++.|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++.. .-.++
T Consensus 2 ~i~i~~~~~~~~~-~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~R~ 78 (345)
T COG1118 2 SIRINNVKKRFGA-FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRDRK 78 (345)
T ss_pred ceeehhhhhhccc-ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhhcc
Confidence 4788999999975 56999999999999999999999999999999999999999999999999 555533 33467
Q ss_pred ceEEcccCcCC-cccHHHHHhcCC------CCC--CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 436 IGMVTQDTSLL-HRSIRDNILYGR------PDA--SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 436 i~~v~Q~~~lf-~~ti~eNi~~g~------~~~--~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
||+|+|+.-|| ..||.|||.||- |+. ...++.+.++.++++.+- .....+|||||
T Consensus 79 VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la----------------~ryP~QLSGGQ 142 (345)
T COG1118 79 VGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLA----------------DRYPAQLSGGQ 142 (345)
T ss_pred eeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchh----------------hcCchhcChHH
Confidence 99999999999 559999999996 211 122333333444333222 23456899999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecCh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~ 583 (604)
|||+||||||..+|++|+||||+++||++-.+.+.+-+++.. -+.|+++|||+.+.+ +.||||++|++|+|.+.|++
T Consensus 143 rQRVALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p 222 (345)
T COG1118 143 RQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPP 222 (345)
T ss_pred HHHHHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCH
Confidence 999999999999999999999999999999999988887764 278999999999865 55999999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+|....
T Consensus 223 ~ev~~~ 228 (345)
T COG1118 223 DEVYDH 228 (345)
T ss_pred HHHhcC
Confidence 999765
No 201
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=100.00 E-value=2.3e-44 Score=367.20 Aligned_cols=226 Identities=25% Similarity=0.398 Sum_probs=185.1
Q ss_pred eEEEEEEEEEeCC--------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH
Q psy13349 359 KIFFKNVSFSYDQ--------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~--------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~ 430 (604)
.++++||+++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 4899999999963 24699999999999999999999999999999999999999999999999998755555
Q ss_pred HHhccceEEcccCc--CCcc-cHHHHHhcCC---CCCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCC
Q psy13349 431 SLREQIGMVTQDTS--LLHR-SIRDNILYGR---PDASE----CELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHG 499 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~--lf~~-ti~eNi~~g~---~~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g 499 (604)
..++.++|+||++. +++. |+.+|+.+.. ..... +++.++++.. |++ .......
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~ 147 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQV----------------GLLPDHASYYP 147 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc----------------CCChHHHhcCc
Confidence 66678999999985 4444 8999987531 11111 2222333333 332 1223344
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGC 576 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~ 576 (604)
.+||||||||++|||||+.+|+++||||||++||+.+.+.+.+.|.++. .++|+|++||+++.+.. ||++++|++|+
T Consensus 148 ~~LS~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~ 227 (267)
T PRK15112 148 HMLAPGQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGE 227 (267)
T ss_pred hhcCHHHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 6899999999999999999999999999999999999999999998875 37899999999999876 89999999999
Q ss_pred EeEecChhHHhhc--CcHHHHHHHHh
Q psy13349 577 VAEEGSHLDLLKK--NGLYSRLWRHQ 600 (604)
Q Consensus 577 iv~~g~~~~l~~~--~~~y~~l~~~q 600 (604)
+++.|+++++.+. +..+++++..+
T Consensus 228 i~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (267)
T PRK15112 228 VVERGSTADVLASPLHELTKRLIAGH 253 (267)
T ss_pred EEecCCHHHHhcCCCCHHHHHHHHhc
Confidence 9999999999875 35577787654
No 202
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.3e-44 Score=367.35 Aligned_cols=221 Identities=28% Similarity=0.419 Sum_probs=185.2
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCCCC-HHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISNVS-QES 431 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~~~-~~~ 431 (604)
..++++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+ ...
T Consensus 20 ~~l~i~nl~~~~~~-~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~ 98 (276)
T PRK14271 20 PAMAAVNLTLGFAG-KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVLE 98 (276)
T ss_pred cEEEEeeEEEEECC-EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhHH
Confidence 35899999999974 5799999999999999999999999999999999999986 6999999999987653 456
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHh--hhhhhcCCCccccccCCCCCChhH
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRP---DASECELFNAAKCAEADIFIKSL--TDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~l--p~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
+++.++|++|++.+|+.|++||+.++.. ..++++....+ .+.++.+ +. .+++.+.....+|||||
T Consensus 99 ~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~-----~~~l~~~~l~~-----~~~~~l~~~~~~LSgGq 168 (276)
T PRK14271 99 FRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVA-----QARLTEVGLWD-----AVKDRLSDSPFRLSGGQ 168 (276)
T ss_pred HhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHH-----HHHHHHcCCCc-----hhhhHhhCCcccCCHHH
Confidence 7889999999999999999999987632 12333332211 1112211 11 12244566778999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhH
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 585 (604)
|||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|++++
T Consensus 169 ~qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~ 248 (276)
T PRK14271 169 QQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQ 248 (276)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999988767899999999998754 89999999999999999999
Q ss_pred Hhhc
Q psy13349 586 LLKK 589 (604)
Q Consensus 586 l~~~ 589 (604)
+.+.
T Consensus 249 ~~~~ 252 (276)
T PRK14271 249 LFSS 252 (276)
T ss_pred HHhC
Confidence 9775
No 203
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.8e-44 Score=368.42 Aligned_cols=219 Identities=28% Similarity=0.420 Sum_probs=182.2
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~--~~~~ 430 (604)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+..
T Consensus 38 ~~l~i~~l~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~~ 116 (285)
T PRK14254 38 TVIEARDLNVFYGD-EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116 (285)
T ss_pred ceEEEEEEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccchH
Confidence 45999999999975 569999999999999999999999999999999999997 689999999999864 3455
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCC--CC---HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPD--AS---ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~~---~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
.+++.++|++|++.+|+.|++||+.++... .. ++++.++++..++...+ ....++...+||||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i------------~~~~~~~~~~LSgG 184 (285)
T PRK14254 117 ALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV------------KDQLDSSGLDLSGG 184 (285)
T ss_pred hhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh------------HHHHhCCcccCCHH
Confidence 678899999999999988999999875211 11 22333333333322111 12345567799999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEE-EEeCCEEeEecCh
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLI-VLDNGCVAEEGSH 583 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~-vl~~G~iv~~g~~ 583 (604)
||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. |||++ +|++|++++.|++
T Consensus 185 e~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~ 264 (285)
T PRK14254 185 QQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDT 264 (285)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCH
Confidence 999999999999999999999999999999999999999988767899999999999765 89975 5799999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++.+.
T Consensus 265 ~~~~~~ 270 (285)
T PRK14254 265 DKIFEN 270 (285)
T ss_pred HHHHhC
Confidence 998754
No 204
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=1.2e-44 Score=384.08 Aligned_cols=217 Identities=28% Similarity=0.472 Sum_probs=183.2
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++.+.++ .++.++
T Consensus 18 ~~l~l~~v~~~~~~-~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 94 (377)
T PRK11607 18 PLLEIRNLTKSFDG-QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPIN 94 (377)
T ss_pred ceEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCEE
Confidence 35999999999975 569999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
||+|++.+|+. |++||+.++.. ..+..+..+ .+.+.++.+ |+.........+||||||||+||||
T Consensus 95 ~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~-----~v~~~l~~l-------~L~~~~~~~~~~LSgGq~QRVaLAR 162 (377)
T PRK11607 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIAS-----RVNEMLGLV-------HMQEFAKRKPHQLSGGQRQRVALAR 162 (377)
T ss_pred EEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 99999999976 99999998742 122222211 112222222 5555555666799999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||+++|++|+||||||+||+.+.+.+.+.++++. .+.|+|+|||+++.+ ..||+|++|++|++++.|+++|+.++
T Consensus 163 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~ 240 (377)
T PRK11607 163 SLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEH 240 (377)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhC
Confidence 9999999999999999999999999998887664 378999999999986 55999999999999999999999875
No 205
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-44 Score=355.68 Aligned_cols=201 Identities=29% Similarity=0.484 Sum_probs=169.0
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
|+++|++++|++. . .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|+
T Consensus 1 i~~~~l~~~~~~~-~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 75 (211)
T cd03298 1 VRLDKIRFSYGEQ-P--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVSML 75 (211)
T ss_pred CEEEeEEEEeCCE-e--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEEEE
Confidence 4789999999752 2 39999999999999999999999999999999999999999999999876654 35789999
Q ss_pred cccCcCCcc-cHHHHHhcCCC-CC-----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRP-DA-----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~-~~-----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+|++.+|++ |++||+.++.. .. +++++.++++..++ +........+||||||||++|
T Consensus 76 ~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l----------------~~~~~~~~~~LS~G~~qrv~i 139 (211)
T cd03298 76 FQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGL----------------AGLEKRLPGELSGGERQRVAL 139 (211)
T ss_pred ecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCC----------------HHHHhCCcccCCHHHHHHHHH
Confidence 999999976 99999987632 11 12233344444433 333334455899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
|||++++|+++||||||++||+.+...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 140 a~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 140 ARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 999999999999999999999999999999998875 37899999999998865 9999999999998765
No 206
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.9e-44 Score=359.03 Aligned_cols=211 Identities=29% Similarity=0.484 Sum_probs=177.8
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++||+++|++ .+ .|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|+
T Consensus 2 l~~~~l~~~~~~-~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 76 (232)
T PRK10771 2 LKLTDITWLYHH-LP--MRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP--SRRPVSML 76 (232)
T ss_pred eEEEEEEEEECC-cc--ceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh--hhccEEEE
Confidence 689999999974 22 39999999999999999999999999999999999999999999999876544 25689999
Q ss_pred cccCcCCcc-cHHHHHhcCC-CCC-----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGR-PDA-----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~-~~~-----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
||++.+|++ |++||+.++. +.. .++++.++++..++. ..+......||||||||++|
T Consensus 77 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~----------------~~~~~~~~~LS~G~~qrv~l 140 (232)
T PRK10771 77 FQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIE----------------DLLARLPGQLSGGQRQRVAL 140 (232)
T ss_pred ecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcH----------------HHHhCCcccCCHHHHHHHHH
Confidence 999999976 9999998753 211 122344444444443 33344445899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|||++++|+++||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 141 aral~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 141 ARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999988743 7899999999998765 899999999999999999998875
Q ss_pred Cc
Q psy13349 590 NG 591 (604)
Q Consensus 590 ~~ 591 (604)
..
T Consensus 221 ~~ 222 (232)
T PRK10771 221 KA 222 (232)
T ss_pred hh
Confidence 43
No 207
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-44 Score=366.65 Aligned_cols=219 Identities=29% Similarity=0.393 Sum_probs=183.3
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~--~~~~ 430 (604)
..++++||++.|++ +++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+..
T Consensus 6 ~~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 84 (259)
T PRK14260 6 PAIKVKDLSFYYNT-SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRININ 84 (259)
T ss_pred ceEEEEEEEEEECC-eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccchH
Confidence 36899999999975 5699999999999999999999999999999999999985 48999999998854 3456
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCC---CCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPD---ASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~---~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.+++.++|++|++.+|+.|++||+.++... .++ +.+.++++.+++.+.+ .......+..||
T Consensus 85 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l------------~~~~~~~~~~LS 152 (259)
T PRK14260 85 RLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEV------------KDKLNKSALGLS 152 (259)
T ss_pred hhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchh------------hhHhcCCcccCC
Confidence 778899999999999999999999875211 111 2233444444433222 122345667999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEe-----CCEE
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLD-----NGCV 577 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~-----~G~i 577 (604)
||||||++|||||+++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|+ +|++
T Consensus 153 ~G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i 232 (259)
T PRK14260 153 GGQQQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQM 232 (259)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceE
Confidence 99999999999999999999999999999999999999999988777999999999998765 89999997 5999
Q ss_pred eEecChhHHhhc
Q psy13349 578 AEEGSHLDLLKK 589 (604)
Q Consensus 578 v~~g~~~~l~~~ 589 (604)
++.|+++++.+.
T Consensus 233 ~~~~~~~~~~~~ 244 (259)
T PRK14260 233 VEFGVTTQIFSN 244 (259)
T ss_pred EEeCCHHHHhcC
Confidence 999999998754
No 208
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.8e-44 Score=366.34 Aligned_cols=218 Identities=28% Similarity=0.443 Sum_probs=180.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISN--VSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~--~~~~~ 431 (604)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+...
T Consensus 4 ~l~i~~v~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~~~ 82 (258)
T PRK14241 4 RIDVKDLNIYYGS-FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82 (258)
T ss_pred cEEEeeEEEEECC-EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccChHH
Confidence 5899999999975 4699999999999999999999999999999999999974 69999999999853 34567
Q ss_pred HhccceEEcccCcCCc-ccHHHHHhcCCC--C-CCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 432 LREQIGMVTQDTSLLH-RSIRDNILYGRP--D-ASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~--~-~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
+|+.++|++|++.+|+ .|++||+.++.. . .+.+ ++.++++..++.+. +.........+||
T Consensus 83 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~------------~~~~~~~~~~~LS 150 (258)
T PRK14241 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNE------------VKDRLDKPGGGLS 150 (258)
T ss_pred HhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchh------------hhhHhhCCcccCC
Confidence 7889999999999997 499999986521 1 1111 22222322222111 1233455667899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEe------CCE
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLD------NGC 576 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~------~G~ 576 (604)
||||||++|||||+.+|+++||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|+ +|+
T Consensus 151 ~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~ 230 (258)
T PRK14241 151 GGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGR 230 (258)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCce
Confidence 9999999999999999999999999999999999999999998876789999999999875 599999996 899
Q ss_pred EeEecChhHHhhc
Q psy13349 577 VAEEGSHLDLLKK 589 (604)
Q Consensus 577 iv~~g~~~~l~~~ 589 (604)
+++.|+++++...
T Consensus 231 i~~~~~~~~~~~~ 243 (258)
T PRK14241 231 LVEIDDTEKIFSN 243 (258)
T ss_pred EEecCCHHHHHhC
Confidence 9999999998764
No 209
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=100.00 E-value=1.1e-44 Score=357.32 Aligned_cols=205 Identities=31% Similarity=0.493 Sum_probs=172.0
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhccce
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN--VSQESLREQIG 437 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~--~~~~~~r~~i~ 437 (604)
++++||+++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (213)
T cd03262 1 IEIKNLHKSFGD-FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQKVG 79 (213)
T ss_pred CEEEEEEEEECC-eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhcce
Confidence 478999999975 579999999999999999999999999999999999999999999999999853 34456788999
Q ss_pred EEcccCcCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDTSLLH-RSIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~~lf~-~ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|++|++.+|+ .|++||+.++.. ..+.++..+ .+.+.++.+ |++..+.....+||||||||++||
T Consensus 80 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv~la 147 (213)
T cd03262 80 MVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEE-----RALELLEKV-------GLADKADAYPAQLSGGQQQRVAIA 147 (213)
T ss_pred EEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc-------CCHhHhhhCccccCHHHHHHHHHH
Confidence 9999999986 599999987532 122222111 112233322 555556666779999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
||++.+|+++||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 148 RALAMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred HHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999999875 47899999999999864 999999999975
No 210
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=3.4e-44 Score=374.81 Aligned_cols=228 Identities=27% Similarity=0.405 Sum_probs=183.8
Q ss_pred eEEEEEEEEEeCC---------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH
Q psy13349 359 KIFFKNVSFSYDQ---------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ 429 (604)
Q Consensus 359 ~i~~~~vsf~y~~---------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~ 429 (604)
-++++|+++.|+. ..++++||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 5899999999963 2469999999999999999999999999999999999999999999999999988765
Q ss_pred H---HHhccceEEcccCc--CCcc-cHHHHHhcC---CCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCC
Q psy13349 430 E---SLREQIGMVTQDTS--LLHR-SIRDNILYG---RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHG 499 (604)
Q Consensus 430 ~---~~r~~i~~v~Q~~~--lf~~-ti~eNi~~g---~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g 499 (604)
. .+|++|+||+|+|. +++. |+.+|+... ....+.++.. ..+.++++.+ |++. ......
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~-----~~~~~~l~~~-------gL~~~~~~~~p 152 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERR-----EKALAMMAKV-------GLRPEHYDRYP 152 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHH-----HHHHHHHHHC-------CCChHHhcCCC
Confidence 3 46788999999984 6654 899988632 1111221111 1112222222 3331 234456
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGC 576 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~ 576 (604)
..||||||||++|||||+.+|++||+||||++||+.++..+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+
T Consensus 153 ~~LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ 232 (327)
T PRK11308 153 HMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGR 232 (327)
T ss_pred ccCCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCE
Confidence 78999999999999999999999999999999999999999999988753 7899999999999875 99999999999
Q ss_pred EeEecChhHHhhc-CcHHHH-HHH
Q psy13349 577 VAEEGSHLDLLKK-NGLYSR-LWR 598 (604)
Q Consensus 577 iv~~g~~~~l~~~-~~~y~~-l~~ 598 (604)
|+|.|+.+++.+. ...|.+ ++.
T Consensus 233 ive~g~~~~~~~~p~hpyt~~ll~ 256 (327)
T PRK11308 233 CVEKGTKEQIFNNPRHPYTQALLS 256 (327)
T ss_pred EEEECCHHHHhcCCCCHHHHHHHH
Confidence 9999999999875 234554 443
No 211
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.8e-44 Score=375.45 Aligned_cols=224 Identities=24% Similarity=0.380 Sum_probs=179.4
Q ss_pred eEEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHHH
Q psy13349 359 KIFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI----KYGEILIDGQNISNVSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~----~~G~I~i~g~~~~~~~~~~ 431 (604)
-++++|+++.|++. .++|+||||+|++||++||||+||||||||+++|+|+++| ++|+|.++|.++.+++.++
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 37899999999753 3699999999999999999999999999999999999984 8999999999998888765
Q ss_pred Hh----ccceEEcccCc--CCcc-cHHHHHhcCC---CCCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCcccccc
Q psy13349 432 LR----EQIGMVTQDTS--LLHR-SIRDNILYGR---PDASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGE 497 (604)
Q Consensus 432 ~r----~~i~~v~Q~~~--lf~~-ti~eNi~~g~---~~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e 497 (604)
++ +.|+||||++. +++. |+.+|+...- ...+. +++.++++.+++.+. ...++.
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~-------------~~~l~~ 149 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP-------------ASRLDV 149 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh-------------HHHHhC
Confidence 54 36999999985 4433 6665553210 01111 222333333332110 123456
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeC
Q psy13349 498 HGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDN 574 (604)
Q Consensus 498 ~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~ 574 (604)
...+||||||||++|||||+.+|++||+||||++||+.++..+++.|+++.+ +.|+|+|||+++.+. .||||++|++
T Consensus 150 ~p~~LSgGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~ 229 (326)
T PRK11022 150 YPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYA 229 (326)
T ss_pred CchhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6779999999999999999999999999999999999999999999988753 789999999999885 5999999999
Q ss_pred CEEeEecChhHHhhc-CcHHHH
Q psy13349 575 GCVAEEGSHLDLLKK-NGLYSR 595 (604)
Q Consensus 575 G~iv~~g~~~~l~~~-~~~y~~ 595 (604)
|+|+|.|+++++.++ ...|.+
T Consensus 230 G~ive~g~~~~~~~~p~hpyt~ 251 (326)
T PRK11022 230 GQVVETGKAHDIFRAPRHPYTQ 251 (326)
T ss_pred CEEEEECCHHHHhhCCCChHHH
Confidence 999999999999875 334544
No 212
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-44 Score=356.10 Aligned_cols=205 Identities=25% Similarity=0.447 Sum_probs=172.0
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+++.++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~~~ 75 (210)
T cd03269 1 LEVENVTKRFGR-VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIGYL 75 (210)
T ss_pred CEEEEEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEEEe
Confidence 478999999974 569999999999999999999999999999999999999999999999987653 467789999
Q ss_pred cccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+|++.+|++ |++||+.++.. ..+..+.. ..+.++++.+ |++........+||||||||++||||+
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrl~la~al 143 (210)
T cd03269 76 PEERGLYPKMKVIDQLVYLAQLKGLKKEEAR-----RRIDEWLERL-------ELSEYANKRVEELSKGNQQKVQFIAAV 143 (210)
T ss_pred ccCCcCCcCCcHHHHHHHHHHHcCCChHHHH-----HHHHHHHHHc-------CChHHHhCcHhhCCHHHHHHHHHHHHH
Confidence 999999875 99999987421 11111111 1123333333 555555666779999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
+.+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 144 ~~~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 144 IHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999999998865 47899999999998755 8999999999998764
No 213
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=100.00 E-value=3.8e-44 Score=359.33 Aligned_cols=215 Identities=27% Similarity=0.448 Sum_probs=180.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|+
T Consensus 1 i~i~~l~~~~~~-~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~~~ 77 (237)
T TIGR00968 1 IEIANISKRFGS-FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIGFV 77 (237)
T ss_pred CEEEEEEEEECC-eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEEEE
Confidence 478999999975 469999999999999999999999999999999999999999999999999876543 46789999
Q ss_pred cccCcCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
||++.+|++ |++||+.++.+. .+..+.. ..+++.++.+ |+.........+|||||+||++|||||
T Consensus 78 ~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~-----~~~~~~l~~~-------~l~~~~~~~~~~lS~G~~qrl~laral 145 (237)
T TIGR00968 78 FQHYALFKHLTVRDNIAFGLEIRKHPKAKIK-----ARVEELLELV-------QLEGLGDRYPNQLSGGQRQRVALARAL 145 (237)
T ss_pred ecChhhccCCcHHHHHHhHHHhcCCCHHHHH-----HHHHHHHHHc-------CCHhHhhCChhhCCHHHHHHHHHHHHH
Confidence 999999976 999999876431 1111111 1123333333 333334455578999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
+++|+++||||||++||+.+++.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 146 ~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 146 AVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999999999988754 7899999999998755 899999999999999999999764
No 214
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-44 Score=362.86 Aligned_cols=218 Identities=30% Similarity=0.439 Sum_probs=180.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEECCEeCCC--CCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----YGEILIDGQNISN--VSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~I~i~g~~~~~--~~~~~ 431 (604)
.++++||+++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+...
T Consensus 4 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 82 (252)
T PRK14272 4 LLSAQDVNIYYGD-KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVA 82 (252)
T ss_pred EEEEeeeEEEECC-EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCHHH
Confidence 4789999999974 57999999999999999999999999999999999999874 8999999999864 33456
Q ss_pred HhccceEEcccCcCCcc-cHHHHHhcCCC--CC-CHHHHHHHH----HHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 432 LREQIGMVTQDTSLLHR-SIRDNILYGRP--DA-SECELFNAA----KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~-~~~~i~~a~----~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
+|+.++|++|++.+|+. |++||+.++.. .. .+++..+.+ +..++.+ ++.........+||
T Consensus 83 ~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~l~~~~~~~~~~LS 150 (252)
T PRK14272 83 MRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD------------EVKDRLKTPATGLS 150 (252)
T ss_pred hhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcch------------hhhhhhcCCcccCC
Confidence 78899999999999975 99999986532 11 222222221 1111111 11112234456899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 582 (604)
||||||++|||||+++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+
T Consensus 151 ~G~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 230 (252)
T PRK14272 151 GGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGP 230 (252)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988777999999999998875 89999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
++++.+.
T Consensus 231 ~~~~~~~ 237 (252)
T PRK14272 231 TDQLFTN 237 (252)
T ss_pred HHHHHhC
Confidence 9998765
No 215
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-44 Score=364.29 Aligned_cols=219 Identities=29% Similarity=0.411 Sum_probs=184.8
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCC----CC
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNIS----NV 427 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~----~~ 427 (604)
.+.|+++|++++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+.+| ++|+|.++|.++. ..
T Consensus 14 ~~~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~~~ 92 (265)
T PRK14252 14 QQKSEVNKLNFYYGG-YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEV 92 (265)
T ss_pred CceEEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccccc
Confidence 457999999999975 4799999999999999999999999999999999999875 7999999998774 23
Q ss_pred CHHHHhccceEEcccCcCCcccHHHHHhcCCC--CCC-----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 428 SQESLREQIGMVTQDTSLLHRSIRDNILYGRP--DAS-----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 428 ~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~~-----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
+...+++.++|++|++.+|+.|++||+.++.. ..+ ++++.++++.+++.+ ++.+..+....
T Consensus 93 ~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~l~~~~~~~~~ 160 (265)
T PRK14252 93 DPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD------------EVKDRLGDLAF 160 (265)
T ss_pred CHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch------------hhhHHHhCCcc
Confidence 44567889999999999998899999987531 111 233333443333221 23344556678
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeE
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAE 579 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~ 579 (604)
.|||||+||++|||||+++|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++
T Consensus 161 ~LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~ 240 (265)
T PRK14252 161 NLSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIE 240 (265)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999998877789999999999985 599999999999999
Q ss_pred ecChhHHhh
Q psy13349 580 EGSHLDLLK 588 (604)
Q Consensus 580 ~g~~~~l~~ 588 (604)
.|+++++..
T Consensus 241 ~g~~~~~~~ 249 (265)
T PRK14252 241 FGATDTIFI 249 (265)
T ss_pred eCCHHHHHh
Confidence 999999875
No 216
>PRK14275 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.9e-44 Score=368.71 Aligned_cols=219 Identities=29% Similarity=0.415 Sum_probs=181.4
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--CHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISNV--SQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~~--~~~ 430 (604)
..++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +..
T Consensus 38 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~~ 116 (286)
T PRK14275 38 PHVVAKNFSIYYGE-FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEV 116 (286)
T ss_pred eEEEEeeeEEEECC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccchH
Confidence 35899999999975 469999999999999999999999999999999999864 4999999999988643 234
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRP--DA-SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~-~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.+|+.++|++|++.+|+.|++||+.++.. .. +. +++.++++..++.+ ++..........||
T Consensus 117 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~l~~~~~~~~~~LS 184 (286)
T PRK14275 117 LLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWD------------EVSDRLDKNALGLS 184 (286)
T ss_pred HhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCcc------------chhhHhhCChhhCC
Confidence 57889999999999998899999987632 11 11 11222222222211 11223345667999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 582 (604)
||||||++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 185 gGq~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~ 264 (286)
T PRK14275 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAP 264 (286)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999988767899999999999754 89999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
++++.+.
T Consensus 265 ~~~~~~~ 271 (286)
T PRK14275 265 TAQLFTN 271 (286)
T ss_pred HHHHHhC
Confidence 9998765
No 217
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.8e-44 Score=360.56 Aligned_cols=212 Identities=31% Similarity=0.476 Sum_probs=180.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|+
T Consensus 1 l~~~~l~~~~~~-~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~~~ 77 (232)
T cd03300 1 IELENVSKFYGG-FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVNTV 77 (232)
T ss_pred CEEEeEEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceEEE
Confidence 468999999975 469999999999999999999999999999999999999999999999999876554 36789999
Q ss_pred cccCcCCcc-cHHHHHhcCCC--CCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRP--DASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~--~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+|++.+|.+ |++||+.++.. ..+. +++..+++.. |++.........|||||+||++|
T Consensus 78 ~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~lS~G~~qrl~l 141 (232)
T cd03300 78 FQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLV----------------QLEGYANRKPSQLSGGQQQRVAI 141 (232)
T ss_pred ecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc----------------CCchhhcCChhhCCHHHHHHHHH
Confidence 999999965 99999986521 1111 1222222222 55555555667999999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|||++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+. .||++++|++|++++.|+++++.+.
T Consensus 142 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 142 ARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999999988753 799999999999875 4899999999999999999988764
Q ss_pred C
Q psy13349 590 N 590 (604)
Q Consensus 590 ~ 590 (604)
.
T Consensus 222 ~ 222 (232)
T cd03300 222 P 222 (232)
T ss_pred C
Confidence 3
No 218
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=100.00 E-value=4.8e-44 Score=363.19 Aligned_cols=226 Identities=26% Similarity=0.396 Sum_probs=185.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEe-----CCCCCHHH--
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN-----ISNVSQES-- 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~-----~~~~~~~~-- 431 (604)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~-~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~~~ 84 (258)
T PRK11701 6 LLSVRGLTKLYGP-RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERR 84 (258)
T ss_pred eEEEeeeEEEcCC-ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHHHH
Confidence 5899999999975 579999999999999999999999999999999999999999999999998 77766544
Q ss_pred --HhccceEEcccCc--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCC
Q psy13349 432 --LREQIGMVTQDTS--LLH-RSIRDNILYGR---PDASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKL 502 (604)
Q Consensus 432 --~r~~i~~v~Q~~~--lf~-~ti~eNi~~g~---~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~L 502 (604)
+++.++|++|++. ++. .|+.||+.+.. ...+..+... ...++++.+ |++ +..+..+.+|
T Consensus 85 ~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~~L 152 (258)
T PRK11701 85 RLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV-------EIDAARIDDLPTTF 152 (258)
T ss_pred HHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc-------CCChhHHhCCCccC
Confidence 3567999999984 443 48899986421 0111112111 234445544 554 4667788899
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeE
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAE 579 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~ 579 (604)
|||||||++|||||+.+|+++||||||++||+.+++.+.+.+++..+ +.|+|+|||+++.+. .||+|++|++|++++
T Consensus 153 S~Gq~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~ 232 (258)
T PRK11701 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVE 232 (258)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999987653 789999999999987 599999999999999
Q ss_pred ecChhHHhhcC-cHHHHHH
Q psy13349 580 EGSHLDLLKKN-GLYSRLW 597 (604)
Q Consensus 580 ~g~~~~l~~~~-~~y~~l~ 597 (604)
.|+++++.++. ..|.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (258)
T PRK11701 233 SGLTDQVLDDPQHPYTQLL 251 (258)
T ss_pred eCCHHHHhcCCCCHHHHHH
Confidence 99999987653 3455433
No 219
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=100.00 E-value=2.7e-44 Score=361.80 Aligned_cols=216 Identities=20% Similarity=0.292 Sum_probs=175.7
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHH-hccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY--DIKYGEILIDGQNISNVSQESL-REQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~I~i~g~~~~~~~~~~~-r~~i 436 (604)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+. +|++|+|.++|.++...+.... +..+
T Consensus 1 l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 79 (243)
T TIGR01978 1 LKIKDLHVSVED-KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARAGL 79 (243)
T ss_pred CeEeeEEEEECC-EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhccce
Confidence 478999999974 56999999999999999999999999999999999994 7999999999999988776554 4559
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCC-CCCh
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRPD---------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGI-KLSG 504 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~~---------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~-~LSg 504 (604)
+|++|++.+|++ |++||+.+.... .+.++.. ..+.+.++. .|++. ....... .|||
T Consensus 80 ~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~-------~~l~~~~~~~~~~~~LS~ 147 (243)
T TIGR01978 80 FLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFL-----KLLKAKLAL-------LGMDEEFLNRSVNEGFSG 147 (243)
T ss_pred EeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHH-----HHHHHHHHH-------cCCchhhcccccccCcCH
Confidence 999999999876 899999764211 0111110 011222222 14542 2233333 5999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh--cCeEEEEeCCEEeEec
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA--MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~--~d~i~vl~~G~iv~~g 581 (604)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 148 G~~qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 148 GEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999999998875 47899999999999876 7999999999999999
Q ss_pred ChhHHhh
Q psy13349 582 SHLDLLK 588 (604)
Q Consensus 582 ~~~~l~~ 588 (604)
+++++..
T Consensus 228 ~~~~~~~ 234 (243)
T TIGR01978 228 DVELAKE 234 (243)
T ss_pred CHHHhcc
Confidence 9886543
No 220
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=100.00 E-value=2.9e-44 Score=379.72 Aligned_cols=217 Identities=27% Similarity=0.414 Sum_probs=174.9
Q ss_pred EEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCE----eCCCCCHHHH---h-ccce
Q psy13349 366 SFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ----NISNVSQESL---R-EQIG 437 (604)
Q Consensus 366 sf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~----~~~~~~~~~~---r-~~i~ 437 (604)
...|+. ..+++|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|. ++...+...+ | ++++
T Consensus 31 ~~~~g~-~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~ 109 (382)
T TIGR03415 31 LDETGL-VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVS 109 (382)
T ss_pred HHhhCC-EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEE
Confidence 344432 46899999999999999999999999999999999999999999999996 5666665443 3 5899
Q ss_pred EEcccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
||+|++.+|+ .|++||+.++.. ..+.++.. ..+.+.++.+ |++........+|||||+||++|||
T Consensus 110 ~vfQ~~~l~p~~Tv~eNi~~~~~~~g~~~~~~~-----~~a~e~le~v-------gL~~~~~~~~~~LSgGq~QRV~LAR 177 (382)
T TIGR03415 110 MVFQKFALMPWLTVEENVAFGLEMQGMPEAERR-----KRVDEQLELV-------GLAQWADKKPGELSGGMQQRVGLAR 177 (382)
T ss_pred EEECCCcCCCCCcHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc-------CCchhhcCChhhCCHHHHHHHHHHH
Confidence 9999999997 599999998632 12222111 1112222222 4444444555689999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHhhc-C
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLKK-N 590 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~~~-~ 590 (604)
||+.+|+|||||||||+||+.+...+++.+.++.+ ++|+|+|||+++.+ +.||||++|++|++++.|+++|++.+ .
T Consensus 178 ALa~~P~ILLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~ 257 (382)
T TIGR03415 178 AFAMDADILLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPA 257 (382)
T ss_pred HHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcc
Confidence 99999999999999999999999999999988753 79999999999986 55999999999999999999999865 3
Q ss_pred cHHHH
Q psy13349 591 GLYSR 595 (604)
Q Consensus 591 ~~y~~ 595 (604)
..|.+
T Consensus 258 ~~~~~ 262 (382)
T TIGR03415 258 NDYVA 262 (382)
T ss_pred hHHHH
Confidence 44443
No 221
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.4e-44 Score=360.60 Aligned_cols=218 Identities=30% Similarity=0.427 Sum_probs=183.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--CHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISNV--SQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~~--~~~~ 431 (604)
.++++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +...
T Consensus 3 ~l~~~~v~~~~~~-~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~~~ 81 (250)
T PRK14266 3 RIEVENLNTYFDD-AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDVVE 81 (250)
T ss_pred EEEEEeEEEEeCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccHHH
Confidence 4789999999974 569999999999999999999999999999999999864 4899999999998653 4567
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRP--DA-SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~-~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+++.++|+||++.+|+.|++||+.++.. .. ++ +++.++++..++.+++. ...++.+..|||
T Consensus 82 ~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~------------~~~~~~~~~LS~ 149 (250)
T PRK14266 82 LRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVK------------DKLDKSALGLSG 149 (250)
T ss_pred HhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHH------------HHHhCCcccCCH
Confidence 7889999999999999999999987531 11 12 22333444444433322 123455679999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+++|++++|||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 150 Gq~qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~ 229 (250)
T PRK14266 150 GQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLT 229 (250)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCH
Confidence 9999999999999999999999999999999999999999988778999999999998766 799999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
+++...
T Consensus 230 ~~~~~~ 235 (250)
T PRK14266 230 DQIFIN 235 (250)
T ss_pred HHHHhC
Confidence 998654
No 222
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=4.2e-44 Score=362.39 Aligned_cols=218 Identities=31% Similarity=0.406 Sum_probs=180.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--C---CccEEEECCEeCCC--CCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD--I---KYGEILIDGQNISN--VSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~I~i~g~~~~~--~~~~~ 431 (604)
.++++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+...
T Consensus 5 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~~~ 83 (252)
T PRK14255 5 IITSSDVHLFYGK-FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDVVQ 83 (252)
T ss_pred eEEEEeEEEEECC-eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccHHH
Confidence 5899999999975 579999999999999999999999999999999999975 4 58999999998864 23456
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCC--CC-CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRP--DA-SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~-~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
+++.++|++|++.+|+.|++||+.++.. .. .+ +++.++++.+++.+ ++.........+|||
T Consensus 84 ~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~------------~i~~~~~~~~~~LS~ 151 (252)
T PRK14255 84 LRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD------------EVKDHLHESALSLSG 151 (252)
T ss_pred hcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc------------chhhHHhcCcccCCH
Confidence 7889999999999998999999987521 11 11 12222222222211 122334556679999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
|||||++|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||+|++|++|++++.|+.
T Consensus 152 Gq~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~ 231 (252)
T PRK14255 152 GQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADT 231 (252)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 999999999999999999999999999999999999999998876789999999999985 5899999999999999999
Q ss_pred hHHhhc
Q psy13349 584 LDLLKK 589 (604)
Q Consensus 584 ~~l~~~ 589 (604)
.+....
T Consensus 232 ~~~~~~ 237 (252)
T PRK14255 232 KQMFLN 237 (252)
T ss_pred HHHhcC
Confidence 888754
No 223
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=100.00 E-value=7e-44 Score=362.79 Aligned_cols=231 Identities=27% Similarity=0.427 Sum_probs=184.8
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEECCEeCCCC-----CHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK---YGEILIDGQNISNV-----SQE 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~~~~~~-----~~~ 430 (604)
-++++||++.|++ .++++|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 4 ~l~~~nl~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (262)
T PRK09984 4 IIRVEKLAKTFNQ-HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIR 82 (262)
T ss_pred EEEEeeEEEEeCC-eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchhHH
Confidence 4899999999974 57999999999999999999999999999999999999986 49999999988653 235
Q ss_pred HHhccceEEcccCcCCcc-cHHHHHhcCCCCCCHH-----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 431 SLREQIGMVTQDTSLLHR-SIRDNILYGRPDASEC-----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~-----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
.+++.++|+||++.+|+. |++||+.++....... ..........+.+.++.+ |+..........|||
T Consensus 83 ~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~LS~ 155 (262)
T PRK09984 83 KSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRV-------GMVHFAHQRVSTLSG 155 (262)
T ss_pred HHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHc-------CCHHHHhCCccccCH
Confidence 667889999999998875 9999998764211000 000000011122233222 554445566778999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEec
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g 581 (604)
|||||++||||++.+|++|||||||++||+.+.+.+.+.|+++. .++|+|++||+++.+ +.||+|++|++|++++.|
T Consensus 156 G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 156 GQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred HHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999875 378999999999975 559999999999999999
Q ss_pred ChhHHhhcCcHHHHHHHH
Q psy13349 582 SHLDLLKKNGLYSRLWRH 599 (604)
Q Consensus 582 ~~~~l~~~~~~y~~l~~~ 599 (604)
+++++ .+....++|..
T Consensus 236 ~~~~~--~~~~~~~~~~~ 251 (262)
T PRK09984 236 SSQQF--DNERFDHLYRS 251 (262)
T ss_pred CHHHh--ccHHHHHHHhh
Confidence 99997 23455666643
No 224
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=7.4e-44 Score=340.41 Aligned_cols=222 Identities=26% Similarity=0.434 Sum_probs=192.1
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE-SLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~-~~r~~i~ 437 (604)
-++++|++..|++ .++|++|||++++||+++++|+||+|||||+++|+|+.+|.+|+|.++|.|+...++. ..|..|+
T Consensus 3 mL~v~~l~~~YG~-~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~Gi~ 81 (237)
T COG0410 3 MLEVENLSAGYGK-IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLGIA 81 (237)
T ss_pred ceeEEeEeecccc-eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCCeE
Confidence 4789999999976 5799999999999999999999999999999999999999999999999999999865 4678899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
||||.-.+|+. ||+|||.+|.....+++- .....++..+-+|. +....+.++.+|||||+|-+||||||
T Consensus 82 ~VPegR~iF~~LTVeENL~~g~~~~~~~~~----~~~~~e~v~~lFP~------Lker~~~~aG~LSGGEQQMLAiaRAL 151 (237)
T COG0410 82 YVPEGRRIFPRLTVEENLLLGAYARRDKEA----QERDLEEVYELFPR------LKERRNQRAGTLSGGEQQMLAIARAL 151 (237)
T ss_pred eCcccccchhhCcHHHHHhhhhhccccccc----ccccHHHHHHHChh------HHHHhcCcccCCChHHHHHHHHHHHH
Confidence 99999999976 999999988432221111 11113444455664 56667788899999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHhhcCc
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLKKNG 591 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~~~~~ 591 (604)
+.+|++|+|||||.+|-|.-.++|.+.|+++.+ +.||++|-++.... +.+||.|||++|+|+.+|+.+||.+...
T Consensus 152 m~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~~~ 229 (237)
T COG0410 152 MSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADPD 229 (237)
T ss_pred hcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcCHH
Confidence 999999999999999999999999999999874 56999999999865 5699999999999999999999987644
No 225
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=100.00 E-value=3.7e-44 Score=342.06 Aligned_cols=171 Identities=42% Similarity=0.690 Sum_probs=161.5
Q ss_pred EEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 360 IFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
++++|++++|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++|
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVGY 80 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheEE
Confidence 4789999999753 469999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 439 VTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
++|++.+|+.|++||+ |||||+||++||||++.
T Consensus 81 ~~q~~~~~~~tv~~~l-----------------------------------------------LS~G~~qrv~la~al~~ 113 (173)
T cd03246 81 LPQDDELFSGSIAENI-----------------------------------------------LSGGQRQRLGLARALYG 113 (173)
T ss_pred ECCCCccccCcHHHHC-----------------------------------------------cCHHHHHHHHHHHHHhc
Confidence 9999999999999997 99999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEE
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCV 577 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~i 577 (604)
+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.++.||++++|++|++
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999999998875 47899999999999988999999999974
No 226
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=100.00 E-value=4.5e-44 Score=374.33 Aligned_cols=229 Identities=27% Similarity=0.440 Sum_probs=183.4
Q ss_pred eEEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHH
Q psy13349 359 KIFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK---YGEILIDGQNISNVSQESL 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~~~~~~~~~~~ 432 (604)
-++++|+++.|+. ..++++||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 5899999999963 246999999999999999999999999999999999999996 9999999999998887665
Q ss_pred h----ccceEEcccC--cCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHchHHHHHHH--hhhhhhcCCCccccccCCC
Q psy13349 433 R----EQIGMVTQDT--SLLHR-SIRDNILYGR---PDASECELFNAAKCAEADIFIKS--LTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 433 r----~~i~~v~Q~~--~lf~~-ti~eNi~~g~---~~~~~~~i~~a~~~~~~~~~i~~--lp~~~~~~g~~t~v~e~g~ 500 (604)
+ +.|+||+|++ .+++. |+.+|+.... ...+.++..+. +.+.++. +|+ + ...++....
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~-----~~~~L~~vgL~~-----~-~~~~~~~p~ 160 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEE-----SVRMLDAVKMPE-----A-RKRMKMYPH 160 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHcCCCC-----h-HHHhcCCcc
Confidence 3 4799999998 45543 7888775321 11222222111 1111211 221 1 123566778
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEE
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCV 577 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i 577 (604)
+||||||||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|
T Consensus 161 ~LSgG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~i 240 (330)
T PRK09473 161 EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRT 240 (330)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999988754 789999999999986 5999999999999
Q ss_pred eEecChhHHhhc-CcHHHH-HHH
Q psy13349 578 AEEGSHLDLLKK-NGLYSR-LWR 598 (604)
Q Consensus 578 v~~g~~~~l~~~-~~~y~~-l~~ 598 (604)
+|.|+++++.+. ...|.+ ++.
T Consensus 241 ve~g~~~~i~~~p~~pyt~~l~~ 263 (330)
T PRK09473 241 MEYGNARDVFYQPSHPYSIGLLN 263 (330)
T ss_pred EEECCHHHHHhCCCCHHHHHHHH
Confidence 999999999874 334554 443
No 227
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.1e-44 Score=364.67 Aligned_cols=219 Identities=27% Similarity=0.390 Sum_probs=183.3
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~--~~~~ 430 (604)
..++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+..
T Consensus 19 ~~l~~~nl~~~~~~-~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~~ 97 (274)
T PRK14265 19 SVFEVEGVKVFYGG-FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97 (274)
T ss_pred ceEEEeeEEEEeCC-eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchhH
Confidence 36999999999975 4699999999999999999999999999999999999863 58999999999864 3345
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCCC-----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPDA-----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~-----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
.+|+.++|++|++.+|+.|+.||+.++.... .++++.++++.+++.+.+ ..........||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l------------~~~~~~~~~~LSgG 165 (274)
T PRK14265 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEV------------KDKLKEKGTALSGG 165 (274)
T ss_pred HHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhh------------HHHhcCCcccCCHH
Confidence 6788999999999999889999998763211 122233344444433222 12234556789999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEe---------CC
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLD---------NG 575 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~---------~G 575 (604)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||++++|+ +|
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCc
Confidence 99999999999999999999999999999999999999998877799999999999875 589999997 89
Q ss_pred EEeEecChhHHhhc
Q psy13349 576 CVAEEGSHLDLLKK 589 (604)
Q Consensus 576 ~iv~~g~~~~l~~~ 589 (604)
++++.|+.+++.+.
T Consensus 246 ~~~~~g~~~~~~~~ 259 (274)
T PRK14265 246 KLVEFSPTEQMFGS 259 (274)
T ss_pred eEEEeCCHHHHHhC
Confidence 99999999998764
No 228
>PRK14263 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=7.7e-44 Score=361.88 Aligned_cols=218 Identities=28% Similarity=0.376 Sum_probs=184.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCCC--CHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISNV--SQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~~--~~~~ 431 (604)
.+.++++++.|++ .++++|+||++++||+++|+|+||||||||+++|+|+++| ++|+|.++|.++... +...
T Consensus 8 ~~~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~~~ 86 (261)
T PRK14263 8 VMDCKLDKIFYGN-FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVV 86 (261)
T ss_pred eEEEEeEEEEeCC-EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccchHh
Confidence 5889999999964 5799999999999999999999999999999999999986 799999999998643 3456
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCC-----CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPD-----ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~-----~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
+++.++|++|++.+|..|++||+.++... ...+++.++++.+++.+.+ +...++...+|||||
T Consensus 87 ~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i------------~~~~~~~~~~LS~G~ 154 (261)
T PRK14263 87 VRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEV------------KDKLKVSGLSLSGGQ 154 (261)
T ss_pred hhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhh------------hhhhhCCcccCCHHH
Confidence 78889999999999989999999876321 1123344444444433222 223345677999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEe--------CCEE
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLD--------NGCV 577 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~--------~G~i 577 (604)
+||++|||||+++|+++||||||++||+.+...+.+.|++..+++|+|++||+++.+. .||||++|+ +|++
T Consensus 155 ~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 155 QQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceE
Confidence 9999999999999999999999999999999999999998877789999999999875 589999996 8999
Q ss_pred eEecChhHHhhc
Q psy13349 578 AEEGSHLDLLKK 589 (604)
Q Consensus 578 v~~g~~~~l~~~ 589 (604)
++.|+++++.+.
T Consensus 235 ~~~g~~~~~~~~ 246 (261)
T PRK14263 235 VEMGPTAQIFQN 246 (261)
T ss_pred EEeCCHHHHHhC
Confidence 999999999864
No 229
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=100.00 E-value=7.4e-44 Score=363.49 Aligned_cols=227 Identities=28% Similarity=0.461 Sum_probs=188.7
Q ss_pred eEEEEEEEEEeCC--------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-
Q psy13349 359 KIFFKNVSFSYDQ--------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ- 429 (604)
Q Consensus 359 ~i~~~~vsf~y~~--------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~- 429 (604)
.|+++||++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 3 ~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~ 82 (268)
T PRK10419 3 LLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82 (268)
T ss_pred eEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChh
Confidence 3789999999974 4679999999999999999999999999999999999999999999999999887665
Q ss_pred --HHHhccceEEcccCc--CC-cccHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCC
Q psy13349 430 --ESLREQIGMVTQDTS--LL-HRSIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGI 500 (604)
Q Consensus 430 --~~~r~~i~~v~Q~~~--lf-~~ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~ 500 (604)
..+++.++|++|++. ++ ..|++||+.+... ..+.+ .....+++.+..+ |+++ ..+....
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~-------gl~~~~~~~~~~ 150 (268)
T PRK10419 83 QRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV-------DLDDSVLDKRPP 150 (268)
T ss_pred HHHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc-------CCChhHhhCCCc
Confidence 346789999999983 44 3599999865311 11111 1112234444433 7764 5667788
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
.||||||||++|||||+.+|++|||||||++||+.++..+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++
T Consensus 151 ~LS~Ge~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i 230 (268)
T PRK10419 151 QLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQI 230 (268)
T ss_pred cCChHHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEE
Confidence 9999999999999999999999999999999999999999999988753 7899999999999874 899999999999
Q ss_pred eEecChhHHhhcCcHHHHHH
Q psy13349 578 AEEGSHLDLLKKNGLYSRLW 597 (604)
Q Consensus 578 v~~g~~~~l~~~~~~y~~l~ 597 (604)
++.|+++++.+.++.|..-|
T Consensus 231 ~~~g~~~~~~~~~~~~~~~~ 250 (268)
T PRK10419 231 VETQPVGDKLTFSSPAGRVL 250 (268)
T ss_pred eeeCChhhccCCCCHHHHHH
Confidence 99999999987766665544
No 230
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=100.00 E-value=8e-44 Score=363.26 Aligned_cols=222 Identities=27% Similarity=0.397 Sum_probs=184.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--------ccEEEECCEeCCCCCHHH
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK--------YGEILIDGQNISNVSQES 431 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~--------~G~I~i~g~~~~~~~~~~ 431 (604)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+...
T Consensus 2 l~~~nl~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (272)
T PRK13547 2 LTADHLHVARRH-RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDAPR 80 (272)
T ss_pred eEEEEEEEEECC-EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCHHH
Confidence 689999999965 57999999999999999999999999999999999999998 999999999998888778
Q ss_pred HhccceEEcccCc-CCcccHHHHHhcCCC-CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 432 LREQIGMVTQDTS-LLHRSIRDNILYGRP-DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 432 ~r~~i~~v~Q~~~-lf~~ti~eNi~~g~~-~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+++.++|+||++. +|+.|++||+.++.. ................++.++.+ |+++..+....+||||||||
T Consensus 81 ~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qr 153 (272)
T PRK13547 81 LARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALA-------GATALVGRDVTTLSGGELAR 153 (272)
T ss_pred HHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHc-------CcHhhhcCCcccCCHHHHHH
Confidence 8888999999986 567899999988631 11000000000001112222222 67777777788999999999
Q ss_pred HHHHHHHc---------cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEE
Q psy13349 510 IAIARVIL---------KNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCV 577 (604)
Q Consensus 510 ialARall---------~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~i 577 (604)
++|||||+ .+|++|||||||++||+.+.+.+.+.+++..+ ++|+|+|||+++.+. .||++++|++|++
T Consensus 154 v~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i 233 (272)
T PRK13547 154 VQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAI 233 (272)
T ss_pred HHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeE
Confidence 99999999 59999999999999999999999999988753 789999999999886 5999999999999
Q ss_pred eEecChhHHhhc
Q psy13349 578 AEEGSHLDLLKK 589 (604)
Q Consensus 578 v~~g~~~~l~~~ 589 (604)
++.|+++++.+.
T Consensus 234 ~~~g~~~~~~~~ 245 (272)
T PRK13547 234 VAHGAPADVLTP 245 (272)
T ss_pred EEecCHHHHcCH
Confidence 999999988653
No 231
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.6e-44 Score=372.54 Aligned_cols=221 Identities=22% Similarity=0.351 Sum_probs=180.5
Q ss_pred eEEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC----CCccEEEECCEeCCCCCHHH
Q psy13349 359 KIFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKYGEILIDGQNISNVSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~I~i~g~~~~~~~~~~ 431 (604)
-++++|+++.|+. ...+++||||+|++||+++|+|+||||||||+++|+|+.+ |++|+|.++|+++.+.+.+.
T Consensus 3 ~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (330)
T PRK15093 3 LLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82 (330)
T ss_pred eEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHH
Confidence 3789999999953 2469999999999999999999999999999999999986 58999999999998887665
Q ss_pred Hh----ccceEEcccCc--CCc-ccHHHHHhcCCC---C----C-C----HHHHHHHHHHchHHHHHHHhhhhhhcCCCc
Q psy13349 432 LR----EQIGMVTQDTS--LLH-RSIRDNILYGRP---D----A-S----ECELFNAAKCAEADIFIKSLTDEHGRKGYD 492 (604)
Q Consensus 432 ~r----~~i~~v~Q~~~--lf~-~ti~eNi~~g~~---~----~-~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~ 492 (604)
++ +.|+||+|++. +++ .|+.+|+..... . . . ++++.++++.. |++
T Consensus 83 ~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----------------gL~ 146 (330)
T PRK15093 83 RRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRV----------------GIK 146 (330)
T ss_pred HHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHC----------------CCC
Confidence 43 57999999996 343 489999864210 0 0 0 11222223322 443
Q ss_pred ---cccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-c
Q psy13349 493 ---AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-M 566 (604)
Q Consensus 493 ---t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~ 566 (604)
........+|||||+||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. |
T Consensus 147 ~~~~~~~~~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~ 226 (330)
T PRK15093 147 DHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWA 226 (330)
T ss_pred ChHHHHhCCchhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhC
Confidence 123455679999999999999999999999999999999999999999999998763 7899999999999865 9
Q ss_pred CeEEEEeCCEEeEecChhHHhhc-CcHHHH
Q psy13349 567 DRLIVLDNGCVAEEGSHLDLLKK-NGLYSR 595 (604)
Q Consensus 567 d~i~vl~~G~iv~~g~~~~l~~~-~~~y~~ 595 (604)
|+|++|++|+|+|.|+.+++.+. ...|.+
T Consensus 227 dri~vm~~G~ive~g~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 227 DKINVLYCGQTVETAPSKELVTTPHHPYTQ 256 (330)
T ss_pred CEEEEEECCEEEEECCHHHHHhCCCCHHHH
Confidence 99999999999999999998765 345655
No 232
>PRK11144 modC molybdate transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5.2e-44 Score=377.54 Aligned_cols=211 Identities=25% Similarity=0.411 Sum_probs=178.9
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHHHHhcc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV----SQESLREQ 435 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~----~~~~~r~~ 435 (604)
+++ |++++|++ + .+ |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +....++.
T Consensus 2 l~~-~l~k~~~~-~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~~~ 77 (352)
T PRK11144 2 LEL-NFKQQLGD-L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEKRR 77 (352)
T ss_pred eEE-EEEEEeCC-E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhhCC
Confidence 567 89999975 2 33 89999999999999999999999999999999999999999999998653 23456789
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
++|++|++.+|+. |++||+.++.+...++++.++++.. |++........+||||||||++|||
T Consensus 78 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~----------------gl~~~~~~~~~~LSgGq~qRvalar 141 (352)
T PRK11144 78 IGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALL----------------GIEPLLDRYPGSLSGGEKQRVAIGR 141 (352)
T ss_pred EEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHc----------------CCchhhhCCcccCCHHHHHHHHHHH
Confidence 9999999999965 9999999875433333333333333 4554555566799999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
||+.+|+++|||||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.++.
T Consensus 142 aL~~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p 220 (352)
T PRK11144 142 ALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASS 220 (352)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCc
Confidence 99999999999999999999999999999988753 6899999999997755 8999999999999999999998753
No 233
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=100.00 E-value=4.2e-44 Score=356.44 Aligned_cols=212 Identities=25% Similarity=0.420 Sum_probs=172.2
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHHh
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD---IKYGEILIDGQNISNVSQESLR 433 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~I~i~g~~~~~~~~~~~r 433 (604)
+.++||+|+|++. +++++|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 5799999999874 579999999999999999999999999999999999999 99999999999875 34678
Q ss_pred ccceEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHH-HHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 434 EQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADI-FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~-~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
+.++|++|++.+|++ |++||+.++.............+....++ .++.+ ++..........|||||+||++
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrl~ 153 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL-------ALTRIGGNLVKGISGGERRRVS 153 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh-------cchhhhcccccCcCHHHHHHHH
Confidence 899999999999987 99999987522110000000111111111 12211 4444445566799999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccCh--hHHhhcCeEEEEeCCEEeEec
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRL--STISAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l--~~~~~~d~i~vl~~G~iv~~g 581 (604)
||||++++|+++||||||++||+.+...+.+.+.+.. +++|+|++||++ ...+.||++++|++|++++.|
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 9999999999999999999999999999999998875 478999999998 345679999999999999876
No 234
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-44 Score=362.62 Aligned_cols=219 Identities=29% Similarity=0.405 Sum_probs=183.0
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-----ccEEEECCEeCCC--CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----YGEILIDGQNISN--VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~I~i~g~~~~~--~~~~ 430 (604)
+.++++|++++|++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|+ +|+|.++|.++.. .+..
T Consensus 6 ~~l~~~nl~~~~~~-~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~~~ 84 (261)
T PRK14258 6 PAIKVNNLSFYYDT-QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVNLN 84 (261)
T ss_pred ceEEEeeEEEEeCC-eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccchH
Confidence 46999999999975 46999999999999999999999999999999999999985 8999999998753 3445
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCC--C-CH----HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPD--A-SE----CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--~-~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.+|+.++|++|++.+|+.|++||+.++... . ++ +++.++++..++.+++ +...++....||
T Consensus 85 ~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~------------~~~~~~~~~~LS 152 (261)
T PRK14258 85 RLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEI------------KHKIHKSALDLS 152 (261)
T ss_pred HhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchh------------hhHhcCCcccCC
Confidence 678899999999999999999999875211 1 11 2233333333332222 223456677999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeC-----C
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDN-----G 575 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~-----G 575 (604)
||||||++|||||+++|+++||||||++||+.+...+.+.++++. +++|+|+|||+++.+.. ||+|++|++ |
T Consensus 153 gGq~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G 232 (261)
T PRK14258 153 GGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIG 232 (261)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCc
Confidence 999999999999999999999999999999999999999998864 47999999999998765 899999999 9
Q ss_pred EEeEecChhHHhhc
Q psy13349 576 CVAEEGSHLDLLKK 589 (604)
Q Consensus 576 ~iv~~g~~~~l~~~ 589 (604)
++++.|+++++.+.
T Consensus 233 ~i~~~~~~~~~~~~ 246 (261)
T PRK14258 233 QLVEFGLTKKIFNS 246 (261)
T ss_pred eEEEeCCHHHHHhC
Confidence 99999999998764
No 235
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=100.00 E-value=4.7e-44 Score=371.07 Aligned_cols=208 Identities=24% Similarity=0.406 Sum_probs=173.7
Q ss_pred EeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCc
Q psy13349 368 SYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLH 447 (604)
Q Consensus 368 ~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 447 (604)
+|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++|+||++.+|+
T Consensus 2 ~y~~-~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~ 79 (302)
T TIGR01188 2 VYGD-FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDE 79 (302)
T ss_pred eeCC-eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCC
Confidence 4643 579999999999999999999999999999999999999999999999999875 44567889999999999987
Q ss_pred c-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEE
Q psy13349 448 R-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524 (604)
Q Consensus 448 ~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ili 524 (604)
. |++||+.+... ..+..+..+ ..++.++.+ |+.........+||||||||++|||||+.+|++||
T Consensus 80 ~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lll 147 (302)
T TIGR01188 80 DLTGRENLEMMGRLYGLPKDEAEE-----RAEELLELF-------ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLF 147 (302)
T ss_pred CCcHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 6 99999987421 112111111 112223322 44444455667899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 525 LDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 525 lDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 148 LDEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 148 LDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999999998875 47899999999998865 999999999999999999998654
No 236
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.1e-44 Score=336.71 Aligned_cols=217 Identities=29% Similarity=0.421 Sum_probs=186.8
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
+++++++++|++..++++||||+++.||++||.|||||||||++++|.+++.|++|.|.+||.|... ++...|++||.+
T Consensus 2 l~v~~l~K~y~~~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~-~p~~vrr~IGVl 80 (245)
T COG4555 2 LEVTDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVR-DPSFVRRKIGVL 80 (245)
T ss_pred eeeeehhhhccCHHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeeccccc-ChHHHhhhccee
Confidence 6889999999875569999999999999999999999999999999999999999999999999876 466788899999
Q ss_pred cccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+-+..++.. |.+|||.|... +.++.++. +...+..+.+ +++..+..+..++|-|+|||++|||||
T Consensus 81 ~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~k-----ari~~l~k~l-------~l~~~~~rRv~~~S~G~kqkV~iARAl 148 (245)
T COG4555 81 FGERGLYARLTARENLKYFARLNGLSRKEIK-----ARIAELSKRL-------QLLEYLDRRVGEFSTGMKQKVAIARAL 148 (245)
T ss_pred cCCcChhhhhhHHHHHHHHHHHhhhhhhHHH-----HHHHHHHHHh-------ChHHHHHHHHhhhchhhHHHHHHHHHH
Confidence 987778855 99999998632 22222221 1222222222 566666677778999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
++||++++||||||+||..+...+.+-+.+.+. ++++|+.||.++.++ .||+|+++++|++|..|+.+++.++
T Consensus 149 vh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 149 VHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred hcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 999999999999999999999999999998874 999999999999998 5999999999999999999998764
No 237
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=9.7e-44 Score=368.90 Aligned_cols=219 Identities=28% Similarity=0.436 Sum_probs=183.4
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-----CCccEEEECCEeCCCC--CHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEILIDGQNISNV--SQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~I~i~g~~~~~~--~~~ 430 (604)
..++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +..
T Consensus 44 ~~l~i~nl~~~~~~-~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~~ 122 (305)
T PRK14264 44 AKLSVEDLDVYYGD-DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNLV 122 (305)
T ss_pred ceEEEEEEEEEeCC-eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccHH
Confidence 46999999999975 569999999999999999999999999999999999986 6899999999998643 355
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCCC-------------------CHHHHHHHHHHchHHHHHHHhhhhhhcCCC
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPDA-------------------SECELFNAAKCAEADIFIKSLTDEHGRKGY 491 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~-------------------~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~ 491 (604)
.+|+.++|++|++.+|+.|++||+.++.... .++++.++++..++ ++ ++
T Consensus 123 ~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~-----~~ 190 (305)
T PRK14264 123 ELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WD-----EV 190 (305)
T ss_pred HHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------ch-----hh
Confidence 6788999999999999999999999763210 01112222222221 11 33
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeE-
Q psy13349 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRL- 569 (604)
Q Consensus 492 ~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i- 569 (604)
++..++...+|||||+||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++
T Consensus 191 ~~~~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~ 270 (305)
T PRK14264 191 NDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTA 270 (305)
T ss_pred hHHhcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEE
Confidence 45566778899999999999999999999999999999999999999999999988777899999999999755 9997
Q ss_pred EEEeCCEEeEecChhHHhhc
Q psy13349 570 IVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 570 ~vl~~G~iv~~g~~~~l~~~ 589 (604)
++|++|++++.|+++++.+.
T Consensus 271 ~~l~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 271 VFLTGGELVEYDDTDKIFEN 290 (305)
T ss_pred EEecCCEEEEeCCHHHHHhC
Confidence 56799999999999998754
No 238
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=100.00 E-value=9.7e-44 Score=350.64 Aligned_cols=202 Identities=29% Similarity=0.480 Sum_probs=170.3
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++||++.|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ .+++.++|+
T Consensus 1 ~~~~~l~~~~~~---~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (213)
T TIGR01277 1 LALDKVRYEYEH---LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVSML 75 (213)
T ss_pred CeEEeeeEEeCC---cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceEEE
Confidence 368999999963 578999999999999999999999999999999999999999999999987543 367789999
Q ss_pred cccCcCCcc-cHHHHHhcCC-CCC-----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGR-PDA-----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~-~~~-----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+|++.+|.. |++||+.++. +.. .++++.++++..++.+ .......+||||||||++|
T Consensus 76 ~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------------~~~~~~~~LS~G~~qrl~l 139 (213)
T TIGR01277 76 FQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIAD----------------YLDRLPEQLSGGQRQRVAL 139 (213)
T ss_pred eccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHH----------------HhhCCcccCCHHHHHHHHH
Confidence 999999875 9999998642 211 1223344444444433 3333445899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecC
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
|||++++|+++||||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+. .||++++|++|++++.|.
T Consensus 140 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 140 ARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 999999999999999999999999999999998875 3789999999999875 489999999999999875
No 239
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-43 Score=357.63 Aligned_cols=227 Identities=26% Similarity=0.422 Sum_probs=185.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC------EeCCCCCHHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG------QNISNVSQES 431 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g------~~~~~~~~~~ 431 (604)
..++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .++...+...
T Consensus 9 ~~i~~~~~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~~ 87 (257)
T PRK14246 9 DVFNISRLYLYIND-KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAIK 87 (257)
T ss_pred hheeeeeEEEecCC-ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHHH
Confidence 35899999999975 5699999999999999999999999999999999999999997766665 5666666777
Q ss_pred HhccceEEcccCcCCcc-cHHHHHhcCCC--CC-CHHHHHHHHHHchHHHHHHHhhhhhhcCCCc----cccccCCCCCC
Q psy13349 432 LREQIGMVTQDTSLLHR-SIRDNILYGRP--DA-SECELFNAAKCAEADIFIKSLTDEHGRKGYD----AHVGEHGIKLS 503 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~-~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~----t~v~e~g~~LS 503 (604)
+|+.++|++|++.+|++ |++||+.++.. .. ++++..+. +.+.++.+ |++ ...++.+..||
T Consensus 88 ~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~-----~~~~~~~~-------~l~~~~~~~~~~~~~~LS 155 (257)
T PRK14246 88 LRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKI-----VEECLRKV-------GLWKEVYDRLNSPASQLS 155 (257)
T ss_pred HhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHH-----HHHHHHHc-------CCCccchhhhcCCcccCC
Confidence 88999999999999976 99999987532 11 22222111 11112211 332 23455677899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~ 582 (604)
||||||++||||++.+|+++||||||++||+.++..+.+.+.+..+++|+|++||+++.+ +.||++++|++|++++.|+
T Consensus 156 ~G~~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~ 235 (257)
T PRK14246 156 GGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235 (257)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999999887779999999999998 5599999999999999999
Q ss_pred hhHHhhcC-cHHHHHH
Q psy13349 583 HLDLLKKN-GLYSRLW 597 (604)
Q Consensus 583 ~~~l~~~~-~~y~~l~ 597 (604)
++++.+.. ..|.+.|
T Consensus 236 ~~~~~~~~~~~~~~~~ 251 (257)
T PRK14246 236 SNEIFTSPKNELTEKY 251 (257)
T ss_pred HHHHHhCCCcHHHHHH
Confidence 99998653 3465554
No 240
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.3e-43 Score=354.94 Aligned_cols=210 Identities=30% Similarity=0.508 Sum_probs=178.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
|+++|+++.|++ ++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++|+
T Consensus 1 l~~~~l~~~~~~--~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~~~ 76 (235)
T cd03299 1 LKVENLSKDWKE--FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDISYV 76 (235)
T ss_pred CeeEeEEEEeCC--ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEEEE
Confidence 468999999974 38999999999999999999999999999999999999999999999999876554 36789999
Q ss_pred cccCcCCc-ccHHHHHhcCCCC--CCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 440 TQDTSLLH-RSIRDNILYGRPD--ASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 440 ~Q~~~lf~-~ti~eNi~~g~~~--~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+|++.+|+ .|++||+.++... .+.. ++.++++.. |+...+.....+|||||+||++|
T Consensus 77 ~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~qrl~l 140 (235)
T cd03299 77 PQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML----------------GIDHLLNRKPETLSGGEQQRVAI 140 (235)
T ss_pred eecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc----------------CChhHHhcCcccCCHHHHHHHHH
Confidence 99999985 5999999875321 1111 122222222 44434445567899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|||++++|++++|||||++||+.+.+.+.+.+++..+ ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 141 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 141 ARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHHHHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999999988653 7999999999998764 999999999999999999998765
No 241
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=2.1e-43 Score=357.50 Aligned_cols=206 Identities=31% Similarity=0.484 Sum_probs=171.6
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~~v 75 (255)
T PRK11248 2 LQISHLYADYGG-KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERGVV 75 (255)
T ss_pred EEEEEEEEEeCC-eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEEEE
Confidence 689999999975 5799999999999999999999999999999999999999999999999987642 2468999
Q ss_pred cccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+|++.+|+ .|++||+.++.. ..+..+.. ..+.+.++.+ |++........+||||||||++|||||
T Consensus 76 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~-------gl~~~~~~~~~~LSgGq~qrl~laral 143 (255)
T PRK11248 76 FQNEGLLPWRNVQDNVAFGLQLAGVEKMQRL-----EIAHQMLKKV-------GLEGAEKRYIWQLSGGQRQRVGIARAL 143 (255)
T ss_pred eCCCccCCCCcHHHHHHhHHHHcCCCHHHHH-----HHHHHHHHHc-------CChhHhhCChhhCCHHHHHHHHHHHHH
Confidence 99999886 599999987531 11211111 1122333322 555555566779999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEe--CCEEeEecCh
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLD--NGCVAEEGSH 583 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~--~G~iv~~g~~ 583 (604)
+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|+ +|++++.++.
T Consensus 144 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 215 (255)
T PRK11248 144 AANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPL 215 (255)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecC
Confidence 99999999999999999999999999998863 37999999999998755 89999998 5999998754
No 242
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=100.00 E-value=2.1e-43 Score=350.76 Aligned_cols=205 Identities=25% Similarity=0.386 Sum_probs=173.6
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++|+
T Consensus 1 l~l~~v~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~~~ 75 (223)
T TIGR03740 1 LETKNLSKRFGK-QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIGSL 75 (223)
T ss_pred CEEEeEEEEECC-EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEEEE
Confidence 478999999975 57999999999999999999999999999999999999999999999999875321 2479999
Q ss_pred cccCcCCc-ccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLH-RSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~-~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
||++.+|. .|++||+.++.. ..+++++.++++.. |++........+|||||+||++||||+
T Consensus 76 ~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~~rv~laral 139 (223)
T TIGR03740 76 IESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIV----------------DLTNTGKKKAKQFSLGMKQRLGIAIAL 139 (223)
T ss_pred cCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHc----------------CCcHHHhhhHhhCCHHHHHHHHHHHHH
Confidence 99999886 599999986421 12333444444433 343334444568999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhH
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~ 585 (604)
+.+|++++|||||++||+.+.+.+.+.+++.. +++|+|++||+++.+. .||+|++|++|++++.|+..+
T Consensus 140 ~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 140 LNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred hcCCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999998875 4789999999999885 599999999999999998765
No 243
>TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family. Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts.
Probab=100.00 E-value=2.7e-43 Score=349.19 Aligned_cols=206 Identities=29% Similarity=0.488 Sum_probs=173.9
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HHh
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---SLR 433 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~---~~r 433 (604)
++++|+++.|+++ .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 6899999999752 5699999999999999999999999999999999999999999999999998776643 467
Q ss_pred ccceEEcccCcCCc-ccHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 434 EQIGMVTQDTSLLH-RSIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~-~ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+.++|+||++.+|. .|+.||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~lS~G~~qr 149 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARE-----RARAMLEAV-------GLGDHLDYYPHNLSGGQKQR 149 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHH-----HHHHHHHHc-------CChhhhhcChhhCCHHHHHH
Confidence 89999999999997 599999987532 122222211 112233322 55555556667899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEE
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCV 577 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~i 577 (604)
++||||++++|+++||||||++||+++...+.+.|++.. +++|+|++||+++..+.||+|++|++|++
T Consensus 150 v~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 150 VAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998875 37999999999998888999999999986
No 244
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=100.00 E-value=3.9e-43 Score=355.59 Aligned_cols=223 Identities=23% Similarity=0.376 Sum_probs=180.8
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHHHHhc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI----KYGEILIDGQNISNVSQESLRE 434 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~----~~G~I~i~g~~~~~~~~~~~r~ 434 (604)
.++++|++++| + +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..++
T Consensus 4 ~l~~~~l~~~~-~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~~~ 79 (254)
T PRK10418 4 QIELRNIALQA-A-QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALRGR 79 (254)
T ss_pred EEEEeCeEEEe-c-cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccccc
Confidence 58999999999 3 5799999999999999999999999999999999999999 999999999988632 22346
Q ss_pred cceEEcccCc-CCc--ccHHHHHhcC----CCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc---ccccCCCCCCh
Q psy13349 435 QIGMVTQDTS-LLH--RSIRDNILYG----RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA---HVGEHGIKLSG 504 (604)
Q Consensus 435 ~i~~v~Q~~~-lf~--~ti~eNi~~g----~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t---~v~e~g~~LSg 504 (604)
.++||+|++. .|. .|+.+|+.+. .....++++.++++.. |++. .++.....|||
T Consensus 80 ~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~~~~LS~ 143 (254)
T PRK10418 80 KIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAV----------------GLENAARVLKLYPFEMSG 143 (254)
T ss_pred eEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHc----------------CCCChhhhhhcCCcccCH
Confidence 7999999985 343 4888887542 1111222333333332 3332 45667789999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEec
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g 581 (604)
|||||++|||||+++|++|||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 144 Gq~qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 223 (254)
T PRK10418 144 GMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223 (254)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999988643 789999999999885 58999999999999999
Q ss_pred ChhHHhhcC-c-HHHHHHHHhh
Q psy13349 582 SHLDLLKKN-G-LYSRLWRHQN 601 (604)
Q Consensus 582 ~~~~l~~~~-~-~y~~l~~~q~ 601 (604)
+.+++.+.. . ..+.++..+.
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~ 245 (254)
T PRK10418 224 DVETLFNAPKHAVTRSLVSAHL 245 (254)
T ss_pred CHHHHhhCCCCHHHHHHHHhhh
Confidence 999987653 2 3455665443
No 245
>TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein. This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter.
Probab=100.00 E-value=3.6e-43 Score=371.65 Aligned_cols=212 Identities=29% Similarity=0.456 Sum_probs=178.1
Q ss_pred EEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHHHhccceEE
Q psy13349 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS----QESLREQIGMV 439 (604)
Q Consensus 364 ~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~----~~~~r~~i~~v 439 (604)
|++++|++ .. + |+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....++.++|+
T Consensus 4 ~l~~~~~~-~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~v 80 (354)
T TIGR02142 4 RFSKRLGD-FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGYV 80 (354)
T ss_pred EEEEEECC-EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEEE
Confidence 88999975 33 5 999999999999999999999999999999999999999999999986532 23567889999
Q ss_pred cccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 440 TQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
+|++.+|+. |++||+.++.......+. .....+.++.+ |++........+||||||||++|||||+.
T Consensus 81 ~q~~~l~~~~tv~enl~~~~~~~~~~~~-----~~~~~~~l~~~-------gL~~~~~~~~~~LSgGqkqRvalAraL~~ 148 (354)
T TIGR02142 81 FQEARLFPHLSVRGNLRYGMKRARPSER-----RISFERVIELL-------GIGHLLGRLPGRLSGGEKQRVAIGRALLS 148 (354)
T ss_pred ecCCccCCCCcHHHHHHHHhhccChhHH-----HHHHHHHHHHc-------CChhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999975 999999987432221111 11122333322 66666677778999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++....
T Consensus 149 ~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 223 (354)
T TIGR02142 149 SPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223 (354)
T ss_pred CCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCc
Confidence 9999999999999999999999999988753 7899999999998765 9999999999999999999987653
No 246
>COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.6e-44 Score=333.84 Aligned_cols=223 Identities=29% Similarity=0.502 Sum_probs=190.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE-SLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~-~~r~~i~ 437 (604)
.+..+|+.++|.. ++++++|||++++||+||+.||||+||||.+.++.|+..|++|+|.+||.|++.++.. .-|-.||
T Consensus 4 ~L~a~~l~K~y~k-r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArlGig 82 (243)
T COG1137 4 TLVAENLAKSYKK-RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARLGIG 82 (243)
T ss_pred EEEehhhhHhhCC-eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhcCcc
Confidence 5788999999964 5799999999999999999999999999999999999999999999999999999865 4567799
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
|+||++.+|.+ |++|||...-. ..+.+...+.++..+++.++++ .+.+.-...|..||||||+|+.|||||
T Consensus 83 YLpQE~SIFr~LtV~dNi~~vlE-~~~~d~~~~~~~~~l~~LL~ef-------~i~hlr~~~a~sLSGGERRR~EIARaL 154 (243)
T COG1137 83 YLPQEASIFRKLTVEDNIMAVLE-IREKDLKKAERKEELDALLEEF-------HITHLRDSKAYSLSGGERRRVEIARAL 154 (243)
T ss_pred cccccchHhhcCcHHHHHHHHHh-hhhcchhHHHHHHHHHHHHHHh-------chHHHhcCcccccccchHHHHHHHHHH
Confidence 99999999977 99999986532 2111222223333333433333 566666778899999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChh-HHhhcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~-~~~~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
..+|+.++||||++++||.+...|++.++.++ .+--|++.-|... ++..|||.|++.+|++..+|+++|+.++.
T Consensus 155 a~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 155 AANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred hcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 99999999999999999999999999998887 4777888889974 78899999999999999999999998764
No 247
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=100.00 E-value=8.5e-43 Score=353.02 Aligned_cols=226 Identities=27% Similarity=0.372 Sum_probs=183.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEe-----CCCCCHHH--
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN-----ISNVSQES-- 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~-----~~~~~~~~-- 431 (604)
.++++||++.|++ .++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 81 (253)
T TIGR02323 3 LLQVSGLSKSYGG-GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERR 81 (253)
T ss_pred eEEEeeeEEEeCC-ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHHHH
Confidence 4899999999975 469999999999999999999999999999999999999999999999987 66666543
Q ss_pred --HhccceEEcccCc--CC-cccHHHHHhcCC--CC-CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCC
Q psy13349 432 --LREQIGMVTQDTS--LL-HRSIRDNILYGR--PD-ASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKL 502 (604)
Q Consensus 432 --~r~~i~~v~Q~~~--lf-~~ti~eNi~~g~--~~-~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~L 502 (604)
+++.++|++|++. ++ ..|+.+|+.+.. .. ....+. ...+.++++.+ |++ +........|
T Consensus 82 ~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l-------~l~~~~~~~~~~~L 149 (253)
T TIGR02323 82 RLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV-------EIDPTRIDDLPRAF 149 (253)
T ss_pred HhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc-------CCChhhhhcCchhc
Confidence 3467999999985 33 348888985421 00 011111 12334455544 554 4667778899
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeE
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAE 579 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~ 579 (604)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.+++.. .+.|+|+|||+++.+.. ||++++|++|++++
T Consensus 150 SgG~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~ 229 (253)
T TIGR02323 150 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVE 229 (253)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999998764 37899999999999874 89999999999999
Q ss_pred ecChhHHhhc-CcHHHHHH
Q psy13349 580 EGSHLDLLKK-NGLYSRLW 597 (604)
Q Consensus 580 ~g~~~~l~~~-~~~y~~l~ 597 (604)
.|+++++.+. ...|.++|
T Consensus 230 ~~~~~~~~~~~~~~~~~~~ 248 (253)
T TIGR02323 230 SGLTDQVLDDPQHPYTQLL 248 (253)
T ss_pred ECCHHHHhcCCCCHHHHHH
Confidence 9999998764 34455443
No 248
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=100.00 E-value=6.7e-43 Score=357.34 Aligned_cols=210 Identities=26% Similarity=0.391 Sum_probs=171.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++||+++|++++++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...++.++|
T Consensus 6 ~l~~~~l~~~~~~~~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~---~~~~~~i~~ 82 (272)
T PRK15056 6 GIVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ---ALQKNLVAY 82 (272)
T ss_pred eEEEEeEEEEecCCcEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHH---hhccceEEE
Confidence 58999999999755679999999999999999999999999999999999999999999999998742 122346999
Q ss_pred EcccCcC---CcccHHHHHhcCCCC------CC----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 439 VTQDTSL---LHRSIRDNILYGRPD------AS----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 439 v~Q~~~l---f~~ti~eNi~~g~~~------~~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
+||++.+ +..++++|+.++... .. ++++.++++.. |+.........+||||
T Consensus 83 v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~----------------gl~~~~~~~~~~LSgG 146 (272)
T PRK15056 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARV----------------DMVEFRHRQIGELSGG 146 (272)
T ss_pred eccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHc----------------CChhHhcCCcccCCHH
Confidence 9999865 455799998764210 00 11222222322 3333334455689999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecCh
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~ 583 (604)
||||++|||||+.+|+++||||||++||+.+.+.+.+.|.++. +++|+|++||+++.+. .||+++++ +|++++.|++
T Consensus 147 ~~qrv~laraL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g~~ 225 (272)
T PRK15056 147 QKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASGPT 225 (272)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCH
Confidence 9999999999999999999999999999999999999998875 4789999999998764 58999777 8999999999
Q ss_pred hHHhh
Q psy13349 584 LDLLK 588 (604)
Q Consensus 584 ~~l~~ 588 (604)
+++.+
T Consensus 226 ~~~~~ 230 (272)
T PRK15056 226 ETTFT 230 (272)
T ss_pred HhccC
Confidence 99864
No 249
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.3e-43 Score=335.11 Aligned_cols=172 Identities=41% Similarity=0.645 Sum_probs=159.0
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC--HHHHhccce
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS--QESLREQIG 437 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~--~~~~r~~i~ 437 (604)
++++|+++.|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...+++.++
T Consensus 1 i~~~~l~~~~~~-~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~ 79 (178)
T cd03229 1 LELKNVSKRYGQ-KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLEDELPPLRRRIG 79 (178)
T ss_pred CEEEEEEEEECC-eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccchhHHHHhhcEE
Confidence 478999999975 57999999999999999999999999999999999999999999999999998775 567788999
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
|++|++.+|.. |++||+.+. ||||||||++|||||
T Consensus 80 ~~~q~~~~~~~~t~~~~l~~~--------------------------------------------lS~G~~qr~~la~al 115 (178)
T cd03229 80 MVFQDFALFPHLTVLENIALG--------------------------------------------LSGGQQQRVALARAL 115 (178)
T ss_pred EEecCCccCCCCCHHHheeec--------------------------------------------CCHHHHHHHHHHHHH
Confidence 99999998865 999998753 999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCE
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGC 576 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~ 576 (604)
+++|+++||||||++||+.+...+.+.+++..+ ++|+|++||+++.+. .||+|++|++|+
T Consensus 116 ~~~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 116 AMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred HCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 999999999999999999999999999988764 689999999999988 589999999985
No 250
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=6.4e-43 Score=332.86 Aligned_cols=170 Identities=61% Similarity=0.899 Sum_probs=160.5
Q ss_pred EEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 360 IFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
++++|+++.|++. .++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 80 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIAY 80 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEEE
Confidence 4789999999763 369999999999999999999999999999999999999999999999999988887788899999
Q ss_pred EcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 439 VTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
++|++.+|+.|+.||+ ||||||||++||||++.
T Consensus 81 ~~~~~~~~~~t~~e~l-----------------------------------------------LS~G~~~rl~la~al~~ 113 (171)
T cd03228 81 VPQDPFLFSGTIRENI-----------------------------------------------LSGGQRQRIAIARALLR 113 (171)
T ss_pred EcCCchhccchHHHHh-----------------------------------------------hCHHHHHHHHHHHHHhc
Confidence 9999999999999997 99999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCE
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGC 576 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~ 576 (604)
+|+++||||||++||+.+...+.+.+.+..+++|+|++||+++.++.||++++|++|+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 9999999999999999999999999988877799999999999998899999999985
No 251
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9e-43 Score=332.49 Aligned_cols=170 Identities=35% Similarity=0.620 Sum_probs=157.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (173)
T cd03230 1 IEVRNLSKRYGK-KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-EEVKRRIGYL 78 (173)
T ss_pred CEEEEEEEEECC-eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-HhhhccEEEE
Confidence 468999999975 46999999999999999999999999999999999999999999999999987655 5678899999
Q ss_pred cccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 440 TQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
+|++.+|.+ |++||+. |||||+||++|||||++
T Consensus 79 ~q~~~~~~~~tv~~~~~----------------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 79 PEEPSLYENLTVRENLK----------------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred ecCCccccCCcHHHHhh----------------------------------------------cCHHHHHHHHHHHHHHc
Confidence 999999876 9999973 99999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEE
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCV 577 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~i 577 (604)
+|++++|||||++||+.+.+.+.+.|++.. ++.|+|++||+.+.+. .||++++|++|++
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 999999999999999999999999998875 4689999999999887 5899999999974
No 252
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=9.2e-43 Score=343.93 Aligned_cols=202 Identities=28% Similarity=0.457 Sum_probs=168.8
Q ss_pred EEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHHHHhccceEE
Q psy13349 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV----SQESLREQIGMV 439 (604)
Q Consensus 364 ~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~----~~~~~r~~i~~v 439 (604)
||+++|++. .+ |+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++.++|+
T Consensus 5 ~l~~~~~~~-~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~~ 80 (214)
T cd03297 5 DIEKRLPDF-TL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLV 80 (214)
T ss_pred eeeEecCCe-ee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhhcEEEE
Confidence 899999863 34 99999999 99999999999999999999999999999999999988643 233567889999
Q ss_pred cccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 440 TQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
+|++.+|+. |++||+.++......++ ....+.++++.+ |++........+||||||||++||||++.
T Consensus 81 ~q~~~~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 81 FQQYALFPHLNVRENLAFGLKRKRNRE-----DRISVDELLDLL-------GLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred ecCCccCCCCCHHHHHHHHHhhCCHHH-----HHHHHHHHHHHc-------CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 999999864 99999987643222111 111223334333 66666677788999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEec
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g 581 (604)
+|+++||||||++||+.+.+.+.+.+++..+ ++|+|++||+++.+. .||++++|++|++++.|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999988753 789999999999885 58999999999998876
No 253
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=6.4e-43 Score=344.84 Aligned_cols=215 Identities=33% Similarity=0.519 Sum_probs=184.6
Q ss_pred eEEEEEEEEEeCCC-----------------------CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q psy13349 359 KIFFKNVSFSYDQK-----------------------HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415 (604)
Q Consensus 359 ~i~~~~vsf~y~~~-----------------------~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 415 (604)
.|+++||++-|+.+ .-.++|+||+|+.||+..|.|-||||||||++++.|+++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 57788888777532 1248999999999999999999999999999999999999999
Q ss_pred EEEECCEeCCCCCHHHH----hccceEEcccCcCCcc-cHHHHHhcCCC--CCC----HHHHHHHHHHchHHHHHHHhhh
Q psy13349 416 EILIDGQNISNVSQESL----REQIGMVTQDTSLLHR-SIRDNILYGRP--DAS----ECELFNAAKCAEADIFIKSLTD 484 (604)
Q Consensus 416 ~I~i~g~~~~~~~~~~~----r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~----~~~i~~a~~~~~~~~~i~~lp~ 484 (604)
+|.++|.|+..++.+++ |+.+++|+|..-||+- ||.||..||-. ..+ ++...++++.+|++.|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 99999999999997665 3679999999999966 99999999953 222 2334555666777666655554
Q ss_pred hhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhH
Q psy13349 485 EHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLST 562 (604)
Q Consensus 485 ~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~ 562 (604)
+||||++||+.|||||..||+||++|||+|||||--..+.++.+.++. -+||+++|||+|+.
T Consensus 164 ----------------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdE 227 (386)
T COG4175 164 ----------------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDE 227 (386)
T ss_pred ----------------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHH
Confidence 799999999999999999999999999999999999999999887654 37999999999986
Q ss_pred -HhhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 563 -ISAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 563 -~~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
++..|||..|++|+||+.|+++|++.+
T Consensus 228 AlriG~rIaimkdG~ivQ~Gtp~eIl~~ 255 (386)
T COG4175 228 ALRIGDRIAIMKDGEIVQVGTPEEILLN 255 (386)
T ss_pred HHhccceEEEecCCeEEEeCCHHHHHcC
Confidence 466899999999999999999999875
No 254
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=100.00 E-value=2.4e-42 Score=337.23 Aligned_cols=185 Identities=29% Similarity=0.460 Sum_probs=163.7
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHH-hccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--YDIKYGEILIDGQNISNVSQESL-REQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~~~~~~~~~~~-r~~i 436 (604)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.+||.++.+.+.... |..+
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (200)
T cd03217 1 LEIKDLHVSVGG-KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGI 79 (200)
T ss_pred CeEEEEEEEeCC-EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcE
Confidence 468999999975 5799999999999999999999999999999999999 58999999999999988876554 5569
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
+|+||++.+|++ |+++|+ ... ...||||||||++||||
T Consensus 80 ~~v~q~~~~~~~~~~~~~l-------------------------~~~----------------~~~LS~G~~qrv~lara 118 (200)
T cd03217 80 FLAFQYPPEIPGVKNADFL-------------------------RYV----------------NEGFSGGEKKRNEILQL 118 (200)
T ss_pred EEeecChhhccCccHHHHH-------------------------hhc----------------cccCCHHHHHHHHHHHH
Confidence 999999998876 565554 001 13799999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh--hcCeEEEEeCCEEeEecChhHHh
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS--AMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~--~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
++++|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+. .||++++|++|++++.| +.|+.
T Consensus 119 l~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~-~~~~~ 192 (200)
T cd03217 119 LLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG-DKELA 192 (200)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc-cHHHH
Confidence 999999999999999999999999999998875 4789999999999988 69999999999999999 45554
No 255
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=100.00 E-value=2.6e-42 Score=348.47 Aligned_cols=224 Identities=20% Similarity=0.254 Sum_probs=170.9
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHHh-ccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY--DIKYGEILIDGQNISNVSQESLR-EQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~I~i~g~~~~~~~~~~~r-~~i 436 (604)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++...++...+ +.+
T Consensus 2 i~~~nl~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (248)
T PRK09580 2 LSIKDLHVSVED-KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSPEDRAGEGI 80 (248)
T ss_pred eEEEEEEEEeCC-eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCHHHHhhcce
Confidence 689999999975 56999999999999999999999999999999999994 69999999999999877766554 679
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCC-CCCChhHHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHG-IKLSGGQRQRIAIA 513 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g-~~LSgGq~QrialA 513 (604)
+|++|++.+++. |..+++.+.................+..+++.+.-+. .|+. ....... ..||||||||++||
T Consensus 81 ~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~---~~l~~~~~~~~~~~~LS~G~~qrv~la 157 (248)
T PRK09580 81 FMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIAL---LKMPEDLLTRSVNVGFSGGEKKRNDIL 157 (248)
T ss_pred EEEecCchhccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHH---cCCChhhcccCCCCCCCHHHHHHHHHH
Confidence 999999987754 5555543221110000000001111122222221111 1221 1111222 37999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHHhh--cCeEEEEeCCEEeEecChhHHh
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA--MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~~~--~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
||++++|+++||||||++||+.+.+.+.+.++++.+ ++|+|++||+++.+.. +|+|++|++|++++.|++++..
T Consensus 158 ral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~ 234 (248)
T PRK09580 158 QMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVK 234 (248)
T ss_pred HHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeCCHHHHH
Confidence 999999999999999999999999999999987754 7899999999999887 7999999999999999988553
No 256
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=100.00 E-value=3.9e-42 Score=347.13 Aligned_cols=208 Identities=26% Similarity=0.433 Sum_probs=176.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +..++|
T Consensus 4 ~l~~~~l~~~~~~-~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~-----------~~~i~~ 71 (251)
T PRK09544 4 LVSLENVSVSFGQ-RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG-----------KLRIGY 71 (251)
T ss_pred EEEEeceEEEECC-ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC-----------ccCEEE
Confidence 4899999999975 4699999999999999999999999999999999999999999999987 246999
Q ss_pred EcccCcCCc---ccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLH---RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~---~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
+||++.++. .|+++|+.+. +..+++++.++++..++.++. ......||||||||++||||
T Consensus 72 v~q~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~l~~~gl~~~~----------------~~~~~~LSgGq~qrv~lara 134 (251)
T PRK09544 72 VPQKLYLDTTLPLTVNRFLRLR-PGTKKEDILPALKRVQAGHLI----------------DAPMQKLSGGETQRVLLARA 134 (251)
T ss_pred eccccccccccChhHHHHHhcc-ccccHHHHHHHHHHcCChHHH----------------hCChhhCCHHHHHHHHHHHH
Confidence 999998765 3899998763 334455666666665554432 23345899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcCcH
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKNGL 592 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~~~ 592 (604)
++.+|+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|+ |++++.|+++++.+ ++.
T Consensus 135 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~-~~i~~~g~~~~~~~-~~~ 212 (251)
T PRK09544 135 LLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLN-HHICCSGTPEVVSL-HPE 212 (251)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEC-CceEeeCCHHHHhC-CHH
Confidence 9999999999999999999999999999987753 789999999999975 599999996 47999999999864 455
Q ss_pred HHHHH
Q psy13349 593 YSRLW 597 (604)
Q Consensus 593 y~~l~ 597 (604)
|.++|
T Consensus 213 ~~~~~ 217 (251)
T PRK09544 213 FISMF 217 (251)
T ss_pred HHHHh
Confidence 66666
No 257
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=100.00 E-value=2e-42 Score=327.69 Aligned_cols=164 Identities=34% Similarity=0.524 Sum_probs=151.2
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++|+
T Consensus 1 i~~~~~~~~~~~~~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 69 (166)
T cd03223 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG-----------EDLLFL 69 (166)
T ss_pred CEEEEEEEEcCCCCeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC-----------ceEEEE
Confidence 478999999975567999999999999999999999999999999999999999999999873 589999
Q ss_pred cccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q psy13349 440 TQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN 519 (604)
Q Consensus 440 ~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~ 519 (604)
+|++.+++.|++||+.++ ....||||||||++||||++++
T Consensus 70 ~q~~~~~~~tv~~nl~~~----------------------------------------~~~~LS~G~~~rv~laral~~~ 109 (166)
T cd03223 70 PQRPYLPLGTLREQLIYP----------------------------------------WDDVLSGGEQQRLAFARLLLHK 109 (166)
T ss_pred CCCCccccccHHHHhhcc----------------------------------------CCCCCCHHHHHHHHHHHHHHcC
Confidence 999999988999999763 1257999999999999999999
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCE
Q psy13349 520 APILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGC 576 (604)
Q Consensus 520 p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~ 576 (604)
|+++||||||++||+.+.+.+.+.+++. ++|+|++||+++....||++++|++|-
T Consensus 110 p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~~~d~i~~l~~~~ 164 (166)
T cd03223 110 PKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWKFHDRVLDLDGEG 164 (166)
T ss_pred CCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHhhCCEEEEEcCCC
Confidence 9999999999999999999999999876 589999999999888899999998763
No 258
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=100.00 E-value=4e-42 Score=347.91 Aligned_cols=218 Identities=25% Similarity=0.347 Sum_probs=176.5
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHHhc-c
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--YDIKYGEILIDGQNISNVSQESLRE-Q 435 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~~~~~~~~~~~r~-~ 435 (604)
.++++||++.|++ +++|+|+||++++||++||+|+||||||||+++|+|+ ++|++|+|.++|.++...+....++ .
T Consensus 7 ~l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 85 (252)
T CHL00131 7 ILEIKNLHASVNE-NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPEERAHLG 85 (252)
T ss_pred eEEEEeEEEEeCC-EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChhhhheee
Confidence 5899999999975 4699999999999999999999999999999999998 6899999999999998877666554 5
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCCC-C-----CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCC-CCChhH
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGRP-D-----ASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGI-KLSGGQ 506 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~~-~-----~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~-~LSgGq 506 (604)
+++++|++.+|++ |+.+|+.++.. . ..+.+-.+.. ..+.+.+.. .|+. +..+.... .|||||
T Consensus 86 ~~~~~q~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~-------~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 86 IFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFL--EIINEKLKL-------VGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred EEEEeccccccccccHHHHHHHhhhhhhcccccccccHHHHH--HHHHHHHHH-------cCCchhhhccccccCCCHHH
Confidence 8999999999976 89999876421 0 0000000000 011122221 1443 34444444 599999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh--cCeEEEEeCCEEeEecCh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA--MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~--~d~i~vl~~G~iv~~g~~ 583 (604)
|||++|||||+++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~~~ 236 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGDA 236 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEecCh
Confidence 999999999999999999999999999999999999998875 47999999999998875 799999999999999999
Q ss_pred hHH
Q psy13349 584 LDL 586 (604)
Q Consensus 584 ~~l 586 (604)
+++
T Consensus 237 ~~~ 239 (252)
T CHL00131 237 ELA 239 (252)
T ss_pred hhh
Confidence 743
No 259
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=100.00 E-value=1.9e-42 Score=336.29 Aligned_cols=181 Identities=35% Similarity=0.548 Sum_probs=161.8
Q ss_pred eEEEEEEEEEeCC-----CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHH
Q psy13349 359 KIFFKNVSFSYDQ-----KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY--DIKYGEILIDGQNISNVSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~-----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~I~i~g~~~~~~~~~~ 431 (604)
.++++||+|.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.+||+++.. ..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~---~~ 79 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCch---Hh
Confidence 5899999999975 257999999999999999999999999999999999999 9999999999998864 36
Q ss_pred HhccceEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 432 LREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
+++.++|++|++.+|.. |++||+.++.. . . .|||||+||+
T Consensus 80 ~~~~i~~~~q~~~~~~~~t~~~~i~~~~~------------------------~-----~----------~LS~G~~qrv 120 (194)
T cd03213 80 FRKIIGYVPQDDILHPTLTVRETLMFAAK------------------------L-----R----------GLSGGERKRV 120 (194)
T ss_pred hhheEEEccCcccCCCCCcHHHHHHHHHH------------------------h-----c----------cCCHHHHHHH
Confidence 77889999999998875 99999864210 0 0 7999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChh-HH-hhcCeEEEEeCCEEeEec
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLS-TI-SAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~-~~-~~~d~i~vl~~G~iv~~g 581 (604)
+|||||+++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++ .+ +.||++++|++|++++.|
T Consensus 121 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~~ 194 (194)
T cd03213 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194 (194)
T ss_pred HHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEecC
Confidence 99999999999999999999999999999999998875 4899999999996 44 458999999999998764
No 260
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=1.6e-42 Score=336.43 Aligned_cols=180 Identities=31% Similarity=0.494 Sum_probs=160.7
Q ss_pred eEEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEECCEeCCCCCHHHHh
Q psy13349 359 KIFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY--DIKYGEILIDGQNISNVSQESLR 433 (604)
Q Consensus 359 ~i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~I~i~g~~~~~~~~~~~r 433 (604)
.++++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|.++. ..++
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~----~~~~ 78 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD----KNFQ 78 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH----HHhh
Confidence 4899999999975 257999999999999999999999999999999999986 489999999999875 5667
Q ss_pred ccceEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 434 EQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
++++|++|++.+|.. |++||+.++.. + . +||||||||++|
T Consensus 79 ~~i~~~~q~~~~~~~~tv~~~l~~~~~----------~-------------------~----------~LSgGe~qrv~l 119 (192)
T cd03232 79 RSTGYVEQQDVHSPNLTVREALRFSAL----------L-------------------R----------GLSVEQRKRLTI 119 (192)
T ss_pred hceEEecccCccccCCcHHHHHHHHHH----------H-------------------h----------cCCHHHhHHHHH
Confidence 889999999988875 99999975310 0 0 799999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhH--HhhcCeEEEEeC-CEEeEec
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLST--ISAMDRLIVLDN-GCVAEEG 581 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~--~~~~d~i~vl~~-G~iv~~g 581 (604)
|||++.+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++. .+.||+|++|++ |++++.|
T Consensus 120 a~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~g 192 (192)
T cd03232 120 GVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYFG 192 (192)
T ss_pred HHHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeCC
Confidence 999999999999999999999999999999998875 47999999999983 567999999999 9999865
No 261
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.5e-42 Score=337.58 Aligned_cols=189 Identities=25% Similarity=0.402 Sum_probs=161.6
Q ss_pred eEEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHH
Q psy13349 359 KIFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD---IKYGEILIDGQNISNVSQESL 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~I~i~g~~~~~~~~~~~ 432 (604)
.+.++||+|.|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 4789999999974 4579999999999999999999999999999999999999 89999999999987664 456
Q ss_pred hccceEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 433 REQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
++.++|++|++.+|.. |++||+.++.. . . ..+....||||||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~------~----~-----------------------~~~~~~~LS~Ge~qrl~ 128 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALR------C----K-----------------------GNEFVRGISGGERKRVS 128 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhh------h----c-----------------------cccchhhCCHHHHHHHH
Confidence 7889999999988865 99999976421 0 0 11233579999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEc-cChhHH-hhcCeEEEEeCCEEeEec
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIA-HRLSTI-SAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~it-H~l~~~-~~~d~i~vl~~G~iv~~g 581 (604)
|||||+++|+++||||||++||+.+++.+.+.+++..+ +.|+|+++ |+.+.+ +.||++++|++|++++.|
T Consensus 129 laral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 129 IAEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred HHHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 99999999999999999999999999999999998753 46766665 555555 569999999999998765
No 262
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=8.6e-43 Score=335.60 Aligned_cols=221 Identities=28% Similarity=0.447 Sum_probs=189.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-HhccceE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~~ 438 (604)
++.++++.+|++ -.+++||||++++||+++|+|||||||||++|++.|+|+|++|+|.++|.|+..+++.. .|..|+-
T Consensus 5 L~v~~l~k~FGG-l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi~R 83 (250)
T COG0411 5 LEVRGLSKRFGG-LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGIAR 83 (250)
T ss_pred eeeccceeecCC-EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhcccee
Confidence 679999999975 56999999999999999999999999999999999999999999999999999998765 5677999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCCC-----------CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPDA-----------SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~~-----------~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
-+|.+.+|++ |+.||+..+.... ...+-.++.++ +.+.++. .|++..-++...+||+||
T Consensus 84 TFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~--A~~~Le~-------vgL~~~a~~~A~~LsyG~ 154 (250)
T COG0411 84 TFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--ARELLEF-------VGLGELADRPAGNLSYGQ 154 (250)
T ss_pred ecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH--HHHHHHH-------cCCchhhcchhhcCChhH
Confidence 9999999977 9999999873211 00011111111 1222332 388888888888999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
++|+.|||||..+|++|+||||+++|.+.....+.+.|+++.+ +.|+++|-||++.+.. ||||+||+.|+++.+|+|
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999999999999999874 4899999999998765 999999999999999999
Q ss_pred hHHhhcC
Q psy13349 584 LDLLKKN 590 (604)
Q Consensus 584 ~~l~~~~ 590 (604)
+|..+..
T Consensus 235 ~eV~~dp 241 (250)
T COG0411 235 EEVRNNP 241 (250)
T ss_pred HHHhcCH
Confidence 9987654
No 263
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=100.00 E-value=1.3e-42 Score=340.65 Aligned_cols=198 Identities=30% Similarity=0.523 Sum_probs=162.6
Q ss_pred EEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHHhccce
Q psy13349 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ----ESLREQIG 437 (604)
Q Consensus 362 ~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~----~~~r~~i~ 437 (604)
++||++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++..++. ...++.++
T Consensus 1 i~~l~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 79 (206)
T TIGR03608 1 LKNISKKFGD-KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKLG 79 (206)
T ss_pred CcceEEEECC-EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCee
Confidence 4789999975 579999999999999999999999999999999999999999999999999765432 24577899
Q ss_pred EEcccCcCCc-ccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTSLLH-RSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~lf~-~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
|++|++.+|+ .|++||+.++... ...++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 80 ~~~q~~~~~~~~t~~e~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~lS~G~~qr~~lar 147 (206)
T TIGR03608 80 YLFQNFALIENETVEENLDLGLKYKKLSKKEKRE-----KKKEALEKV-------GLNLKLKQKIYELSGGEQQRVALAR 147 (206)
T ss_pred EEecchhhccCCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CchhhhcCChhhCCHHHHHHHHHHH
Confidence 9999999997 5999999875321 11111111 112222222 4444455556789999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEE
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVL 572 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl 572 (604)
||+++|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.++.||+|++|
T Consensus 148 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~i~~l 206 (206)
T TIGR03608 148 AILKDPPLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206 (206)
T ss_pred HHHcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEeC
Confidence 9999999999999999999999999999998875 478999999999988889999875
No 264
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=100.00 E-value=6e-42 Score=345.61 Aligned_cols=219 Identities=26% Similarity=0.407 Sum_probs=179.1
Q ss_pred EEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEc
Q psy13349 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVT 440 (604)
Q Consensus 361 ~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~ 440 (604)
+++||++. .+|+|+||++++||+++|+||||||||||+++|+|+++ .+|+|.++|.++...+...+++.++|+|
T Consensus 2 ~~~~l~~~-----~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~-~~G~i~~~g~~i~~~~~~~~~~~i~~v~ 75 (248)
T PRK03695 2 QLNDVAVS-----TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLP-GSGSIQFAGQPLEAWSAAELARHRAYLS 75 (248)
T ss_pred cccccchh-----ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC-CCeEEEECCEecCcCCHHHHhhheEEec
Confidence 56778774 27999999999999999999999999999999999986 5899999999998888888888899999
Q ss_pred ccCcCC-cccHHHHHhcCCCC-CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 441 QDTSLL-HRSIRDNILYGRPD-ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 441 Q~~~lf-~~ti~eNi~~g~~~-~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
|++.++ ..|++||+.++.+. .+.++. ....++.++.+ |++.........||||||||++|||||+.
T Consensus 76 q~~~~~~~~tv~~nl~~~~~~~~~~~~~-----~~~~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv~la~al~~ 143 (248)
T PRK03695 76 QQQTPPFAMPVFQYLTLHQPDKTRTEAV-----ASALNEVAEAL-------GLDDKLGRSVNQLSGGEWQRVRLAAVVLQ 143 (248)
T ss_pred ccCccCCCccHHHHHHhcCccCCCcHHH-----HHHHHHHHHHc-------CCHhHhcCCcccCCHHHHHHHHHHHHHhc
Confidence 998654 66999999987432 111111 11223333333 55555566678999999999999999997
Q ss_pred -------CCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 519 -------NAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 519 -------~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
+|+++||||||++||+.+...+.+.+++.. +++|+|++||+++.+ +.||++++|++|++++.|+++++.+.
T Consensus 144 ~~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 223 (248)
T PRK03695 144 VWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTP 223 (248)
T ss_pred cccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhCc
Confidence 679999999999999999999999998875 478999999999966 45999999999999999999988653
Q ss_pred CcHHHHHHH
Q psy13349 590 NGLYSRLWR 598 (604)
Q Consensus 590 ~~~y~~l~~ 598 (604)
....+.+.
T Consensus 224 -~~~~~~~~ 231 (248)
T PRK03695 224 -ENLAQVFG 231 (248)
T ss_pred -hHHHHHhC
Confidence 23445443
No 265
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=100.00 E-value=2.6e-42 Score=331.42 Aligned_cols=177 Identities=37% Similarity=0.593 Sum_probs=157.5
Q ss_pred EEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEc
Q psy13349 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVT 440 (604)
Q Consensus 361 ~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~ 440 (604)
+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|++
T Consensus 1 ~~~~l~~~~~~-~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~i~~~~ 79 (180)
T cd03214 1 EVENLSVGYGG-RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSPKELARKIAYVP 79 (180)
T ss_pred CeeEEEEEECC-eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCHHHHHHHHhHHH
Confidence 47899999975 56999999999999999999999999999999999999999999999999998888888888999999
Q ss_pred ccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q psy13349 441 QDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNA 520 (604)
Q Consensus 441 Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p 520 (604)
| +++..++.++ +......|||||+||++||||++++|
T Consensus 80 q---------------------------~l~~~gl~~~----------------~~~~~~~LS~G~~qrl~laral~~~p 116 (180)
T cd03214 80 Q---------------------------ALELLGLAHL----------------ADRPFNELSGGERQRVLLARALAQEP 116 (180)
T ss_pred H---------------------------HHHHcCCHhH----------------hcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9 3344444332 23345689999999999999999999
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHH-hhcCeEEEEeCCEEeEec
Q psy13349 521 PILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 521 ~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g 581 (604)
+++||||||++||+++.+.+.+.+.+..+ ++|+|++||+++.+ +.||++++|++|++++.|
T Consensus 117 ~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~~ 180 (180)
T cd03214 117 PILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180 (180)
T ss_pred CEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999988754 78999999999987 559999999999998754
No 266
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=100.00 E-value=1e-41 Score=341.92 Aligned_cols=226 Identities=31% Similarity=0.460 Sum_probs=177.6
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-C----CccEEEECCEeCCCCCHHH
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-I----KYGEILIDGQNISNVSQES 431 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-~----~~G~I~i~g~~~~~~~~~~ 431 (604)
++++|++..|... .++++||||++++||++||||+|||||||+.+.++|+.+ | .+|+|.++|.|+-.++.++
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 5789999999653 369999999999999999999999999999999999998 4 5699999999999999765
Q ss_pred H----hccceEEcccCcC-Ccc--cHHHHH----hcCCCCCC----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccc
Q psy13349 432 L----REQIGMVTQDTSL-LHR--SIRDNI----LYGRPDAS----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVG 496 (604)
Q Consensus 432 ~----r~~i~~v~Q~~~l-f~~--ti~eNi----~~g~~~~~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~ 496 (604)
+ .+.|++|+|||.- |+- ||.+-+ .......+ .++..+.++.+++.+ -+..+.
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~-------------~~~~~~ 148 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPD-------------PERRLK 148 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCC-------------HHHHHh
Confidence 3 3579999999852 322 444433 22111001 112233333333321 112344
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEe
Q psy13349 497 EHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLD 573 (604)
Q Consensus 497 e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~ 573 (604)
.-..+||||||||+.||-|++.+|++||.||||+|||..++++|++.|+++. .+.|+|+|||++..+.. ||||+||.
T Consensus 149 ~YPhelSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMY 228 (316)
T COG0444 149 SYPHELSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY 228 (316)
T ss_pred hCCcccCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEE
Confidence 5567999999999999999999999999999999999999999999998876 48999999999997655 99999999
Q ss_pred CCEEeEecChhHHhhcC-cHHHH-HHH
Q psy13349 574 NGCVAEEGSHLDLLKKN-GLYSR-LWR 598 (604)
Q Consensus 574 ~G~iv~~g~~~~l~~~~-~~y~~-l~~ 598 (604)
.|+|||.|+.+++.++. -.|.+ |++
T Consensus 229 aG~iVE~g~~~~i~~~P~HPYT~~Ll~ 255 (316)
T COG0444 229 AGRIVEEGPVEEIFKNPKHPYTRGLLN 255 (316)
T ss_pred CcEEEEeCCHHHHhcCCCChHHHHHHH
Confidence 99999999999998763 34544 443
No 267
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=3.3e-42 Score=331.37 Aligned_cols=172 Identities=28% Similarity=0.518 Sum_probs=156.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i~ 437 (604)
.++++|++++| +++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++
T Consensus 4 ~l~~~~l~~~~-----~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 78 (182)
T cd03215 4 VLEVRGLSVKG-----AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRAGIA 78 (182)
T ss_pred EEEEeccEEEe-----eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCHHHHHhCCeE
Confidence 48999999998 8999999999999999999999999999999999999999999999999988764 45678999
Q ss_pred EEcccC---cCC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDT---SLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~---~lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|++|++ .++ ..|++||+.++.+ ||||||||++||
T Consensus 79 ~~~q~~~~~~~~~~~t~~e~l~~~~~------------------------------------------LS~G~~qrl~la 116 (182)
T cd03215 79 YVPEDRKREGLVLDLSVAENIALSSL------------------------------------------LSGGNQQKVVLA 116 (182)
T ss_pred EecCCcccCcccCCCcHHHHHHHHhh------------------------------------------cCHHHHHHHHHH
Confidence 999995 345 5699999976421 999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
||++.+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+.. ||++++|++|++
T Consensus 117 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 117 RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 99999999999999999999999999999998875 47899999999998876 899999999974
No 268
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=5.1e-42 Score=367.59 Aligned_cols=230 Identities=30% Similarity=0.440 Sum_probs=182.6
Q ss_pred eEEEEEEEEEeCC------C----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q psy13349 359 KIFFKNVSFSYDQ------K----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS 428 (604)
Q Consensus 359 ~i~~~~vsf~y~~------~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~ 428 (604)
-++++|+++.|.. . ..+++||||++++||++||||+||||||||+++|+|+.+|++|+|.++|.+ .+++
T Consensus 280 ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~-~~~~ 358 (539)
T COG1123 280 LLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQD-LDLT 358 (539)
T ss_pred eeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcc-cccc
Confidence 4789999999973 1 358999999999999999999999999999999999999999999999987 3333
Q ss_pred ---HHHHhccceEEcccCcC--C-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCC
Q psy13349 429 ---QESLREQIGMVTQDTSL--L-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIK 501 (604)
Q Consensus 429 ---~~~~r~~i~~v~Q~~~l--f-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~ 501 (604)
....|+.+-+|+|||+- - ..||+++|.-.-.-... ...+.+.+...+..+ ..|+.. .+......
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~--~~~~~~~~rv~~ll~-------~VgL~~~~l~ryP~e 429 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGG--GSGAERRARVAELLE-------LVGLPPEFLDRYPHE 429 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcc--cchHHHHHHHHHHHH-------HcCCCHHHHhcCchh
Confidence 44577899999999974 3 33999998632100000 001111111122111 114444 35566779
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEe
Q psy13349 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVA 578 (604)
Q Consensus 502 LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv 578 (604)
||||||||+||||||..+|+++|+|||||+||+.+...|.+.|+++.+ +.|.++|||+++.++. ||||.||++|+||
T Consensus 430 lSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iV 509 (539)
T COG1123 430 LSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509 (539)
T ss_pred cCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEE
Confidence 999999999999999999999999999999999999999999988763 7999999999999987 9999999999999
Q ss_pred EecChhHHhhc-CcHHHHHHH
Q psy13349 579 EEGSHLDLLKK-NGLYSRLWR 598 (604)
Q Consensus 579 ~~g~~~~l~~~-~~~y~~l~~ 598 (604)
|.|+.+++.+. ...|.+...
T Consensus 510 E~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 510 EEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred EeCCHHHHhcCCCChHHHHHH
Confidence 99998888876 566776553
No 269
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=1.4e-41 Score=377.13 Aligned_cols=215 Identities=25% Similarity=0.438 Sum_probs=182.5
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh-ccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLR-EQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r-~~i~ 437 (604)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..++
T Consensus 11 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 89 (510)
T PRK15439 11 LLCARSISKQYSG-VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLGIY 89 (510)
T ss_pred eEEEEeEEEEeCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCCEE
Confidence 5999999999975 5699999999999999999999999999999999999999999999999999877766554 5799
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
||+|++.+|+. |++||+.++.... .+..+ .+.++++.+ |++........+||||||||++|||||
T Consensus 90 ~v~q~~~~~~~~tv~e~l~~~~~~~--~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrv~la~aL 155 (510)
T PRK15439 90 LVPQEPLLFPNLSVKENILFGLPKR--QASMQ-----KMKQLLAAL-------GCQLDLDSSAGSLEVADRQIVEILRGL 155 (510)
T ss_pred EEeccCccCCCCcHHHHhhcccccc--hHHHH-----HHHHHHHHc-------CCCccccCChhhCCHHHHHHHHHHHHH
Confidence 99999998865 9999999864321 11111 112223322 555555566678999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 229 (510)
T PRK15439 156 MRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLST 229 (510)
T ss_pred HcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCH
Confidence 99999999999999999999999999998875 47899999999998765 99999999999999999988754
No 270
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=100.00 E-value=8.6e-42 Score=333.67 Aligned_cols=195 Identities=23% Similarity=0.358 Sum_probs=164.9
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|+++.|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.++|.++.... ..+++.++|+
T Consensus 1 l~i~~l~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (201)
T cd03231 1 LEADELTCERDG-RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-DSIARGLLYL 78 (201)
T ss_pred CEEEEEEEEeCC-ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-HHhhhheEEe
Confidence 478999999975 56999999999999999999999999999999999999999999999999886543 4678899999
Q ss_pred cccCcCC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 440 TQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 440 ~Q~~~lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
+|++.++ ..|++||+.+..+..+++++.++++..++.++ ......+||||||||++||||+++
T Consensus 79 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~----------------~~~~~~~LS~G~~qrl~laral~~ 142 (201)
T cd03231 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEALARVGLNGF----------------EDRPVAQLSAGQQRRVALARLLLS 142 (201)
T ss_pred ccccccCCCcCHHHHHHhhcccccHHHHHHHHHHcCChhh----------------hcCchhhCCHHHHHHHHHHHHHhc
Confidence 9999887 56999999886543444555555555554322 223346899999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH-hhcCeEEEE
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI-SAMDRLIVL 572 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~-~~~d~i~vl 572 (604)
+|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+...+ ..+|+++++
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 999999999999999999999999998765 478999999987654 557998876
No 271
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=6.8e-42 Score=379.55 Aligned_cols=216 Identities=26% Similarity=0.411 Sum_probs=182.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHH-Hhcc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI--KYGEILIDGQNISNVSQES-LREQ 435 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~~~~~~~~~~-~r~~ 435 (604)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... +|+.
T Consensus 5 ~l~~~nl~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 83 (506)
T PRK13549 5 LLEMKNITKTFGG-VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTERAG 83 (506)
T ss_pred eEEEeeeEEEeCC-eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHHCC
Confidence 4899999999974 5799999999999999999999999999999999999996 8999999999998766543 4678
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGRPD-----ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~~~-----~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
++||+|++.+|+. |++||+.++... .+.++..+ .+.++++.+ |++........+||||||||
T Consensus 84 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgGqkqr 151 (506)
T PRK13549 84 IAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYL-----RAQKLLAQL-------KLDINPATPVGNLGLGQQQL 151 (506)
T ss_pred eEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHH-----HHHHHHHHc-------CCCCCcccchhhCCHHHHHH
Confidence 9999999998865 999999886421 12112111 123333332 55555556677999999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
++|||||+.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 152 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 231 (506)
T PRK13549 152 VEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMT 231 (506)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCC
Confidence 999999999999999999999999999999999998874 57899999999998865 8999999999999999988764
No 272
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=100.00 E-value=1e-41 Score=340.11 Aligned_cols=195 Identities=33% Similarity=0.479 Sum_probs=161.1
Q ss_pred eeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCc-ccHHHHH
Q psy13349 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLH-RSIRDNI 454 (604)
Q Consensus 376 l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi 454 (604)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++|++.+|+ .|++||+
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-----~~~~v~q~~~l~~~~tv~e~l 75 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGP-----DRMVVFQNYSLLPWLTVRENI 75 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh-----hheEEecCcccCCCCCHHHHH
Confidence 579999999999999999999999999999999999999999999999876443 2489999999987 5999999
Q ss_pred hcCC----CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC
Q psy13349 455 LYGR----PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530 (604)
Q Consensus 455 ~~g~----~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts 530 (604)
.++. +..++++..+ .+.+.++.+ |++.........||||||||++|||||+.+|+++||||||+
T Consensus 76 ~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 143 (230)
T TIGR01184 76 ALAVDRVLPDLSKSERRA-----IVEEHIALV-------GLTEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFG 143 (230)
T ss_pred HHHHHhcccCCCHHHHHH-----HHHHHHHHc-------CCHHHHcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 8752 2222222111 112223322 55545555667899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 531 ALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 531 ~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+||+.+.+.+.+.|.+.. .++|+|+|||+++.+.. ||+|++|++|++++.|+..+++
T Consensus 144 gLD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 203 (230)
T TIGR01184 144 ALDALTRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEVP 203 (230)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEecccCceecc
Confidence 999999999999998764 37899999999998754 9999999999999999876653
No 273
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1e-41 Score=334.00 Aligned_cols=195 Identities=23% Similarity=0.354 Sum_probs=164.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++++++|+
T Consensus 2 l~~~~l~~~~~~-~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-~~~~~~~~~~ 79 (204)
T PRK13538 2 LEARNLACERDE-RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-DEYHQDLLYL 79 (204)
T ss_pred eEEEEEEEEECC-EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-HHhhhheEEe
Confidence 689999999975 56999999999999999999999999999999999999999999999999987643 4567789999
Q ss_pred cccCcCCc-ccHHHHHhcCCCC---CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 440 TQDTSLLH-RSIRDNILYGRPD---ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 440 ~Q~~~lf~-~ti~eNi~~g~~~---~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
+|++.+++ .|++||+.++.+. .+++++.++++..++. .........||||||||++||||
T Consensus 80 ~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~l~~~gl~----------------~~~~~~~~~LS~G~~qrl~la~a 143 (204)
T PRK13538 80 GHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQVGLA----------------GFEDVPVRQLSAGQQRRVALARL 143 (204)
T ss_pred CCccccCcCCcHHHHHHHHHHhcCccHHHHHHHHHHHcCCH----------------HHhhCChhhcCHHHHHHHHHHHH
Confidence 99998886 4999999876432 2233444444444443 22334456899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhc-CeEEEE
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVL 572 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~-d~i~vl 572 (604)
++++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.+..| +|++++
T Consensus 144 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 144 WLTRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 999999999999999999999999999998864 478999999999999665 788776
No 274
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.2e-41 Score=385.20 Aligned_cols=228 Identities=31% Similarity=0.454 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeCC----------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q psy13349 359 KIFFKNVSFSYDQ----------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS 428 (604)
Q Consensus 359 ~i~~~~vsf~y~~----------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~ 428 (604)
-++++||++.|+. ..++++||||+|++||++||+||||||||||+++|+|+.+|++|+|.++|.++...+
T Consensus 313 ~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~~~ 392 (623)
T PRK10261 313 ILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLS 392 (623)
T ss_pred eEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCcCC
Confidence 5899999999962 146999999999999999999999999999999999999999999999999998765
Q ss_pred HH---HHhccceEEcccC--cCCcc-cHHHHHhcCCC--CC-CHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccC
Q psy13349 429 QE---SLREQIGMVTQDT--SLLHR-SIRDNILYGRP--DA-SECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEH 498 (604)
Q Consensus 429 ~~---~~r~~i~~v~Q~~--~lf~~-ti~eNi~~g~~--~~-~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~ 498 (604)
.. .+|+.|+||+|++ .+++. |+.||+.++.. .. +.++.. ..+.+.++.+ |++ ......
T Consensus 393 ~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~~L~~~-------gL~~~~~~~~ 460 (623)
T PRK10261 393 PGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAA-----ARVAWLLERV-------GLLPEHAWRY 460 (623)
T ss_pred HHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHH-----HHHHHHHHHc-------CCCHHHhhCC
Confidence 43 3577899999998 47754 99999976310 11 111111 1112222222 553 234555
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCC
Q psy13349 499 GIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNG 575 (604)
Q Consensus 499 g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G 575 (604)
..+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||++|++|
T Consensus 461 ~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G 540 (623)
T PRK10261 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLG 540 (623)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 678999999999999999999999999999999999999999999988753 7899999999998865 9999999999
Q ss_pred EEeEecChhHHhhc-CcHHHH-HHH
Q psy13349 576 CVAEEGSHLDLLKK-NGLYSR-LWR 598 (604)
Q Consensus 576 ~iv~~g~~~~l~~~-~~~y~~-l~~ 598 (604)
+|++.|+.+++... ...|.+ ++.
T Consensus 541 ~iv~~g~~~~i~~~p~~~~~~~l~~ 565 (623)
T PRK10261 541 QIVEIGPRRAVFENPQHPYTRKLMA 565 (623)
T ss_pred EEEEecCHHHHhcCCCCHHHHHHHh
Confidence 99999999998764 334544 443
No 275
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.6e-41 Score=377.14 Aligned_cols=217 Identities=25% Similarity=0.396 Sum_probs=182.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~ 437 (604)
.++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 5 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 83 (510)
T PRK09700 5 YISMAGIGKSFGP-VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLGIG 83 (510)
T ss_pred eEEEeeeEEEcCC-eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCCeE
Confidence 4899999999974 56999999999999999999999999999999999999999999999999998777654 456799
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPD---------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQR 507 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~---------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~ 507 (604)
||+|++.+|.. |++||+.++... .+.++..+ .+.+.++.+ |+.........+||||||
T Consensus 84 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~LSgG~~ 151 (510)
T PRK09700 84 IIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV-------GLKVDLDEKVANLSISHK 151 (510)
T ss_pred EEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc-------CCCCCcccchhhCCHHHH
Confidence 99999998865 999999875310 01111111 122233322 555555566679999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhH
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 585 (604)
||++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 152 qrv~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 231 (510)
T PRK09700 152 QMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSD 231 (510)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhh
Confidence 99999999999999999999999999999999999998875 47899999999998865 89999999999999999887
Q ss_pred Hhh
Q psy13349 586 LLK 588 (604)
Q Consensus 586 l~~ 588 (604)
+..
T Consensus 232 ~~~ 234 (510)
T PRK09700 232 VSN 234 (510)
T ss_pred CCH
Confidence 643
No 276
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=1.4e-41 Score=376.59 Aligned_cols=216 Identities=27% Similarity=0.426 Sum_probs=180.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~ 437 (604)
.++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .++.++
T Consensus 4 ~i~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 82 (501)
T PRK10762 4 LLQLKGIDKAFPG-VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIG 82 (501)
T ss_pred eEEEeeeEEEeCC-eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 4899999999974 57999999999999999999999999999999999999999999999999987655443 467899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPD------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
||+|++.+|.. |++||+.++... .+..+..+ .+.+.++.+ |+.........+||||||||+
T Consensus 83 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrv 150 (501)
T PRK10762 83 IIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYA-----EADKLLARL-------NLRFSSDKLVGELSIGEQQMV 150 (501)
T ss_pred EEEcchhccCCCcHHHHhhhccccccccCccCHHHHHH-----HHHHHHHHc-------CCCCCccCchhhCCHHHHHHH
Confidence 99999988865 999999886321 11111111 122333332 555545556678999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 151 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 229 (501)
T PRK10762 151 EIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLT 229 (501)
T ss_pred HHHHHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCC
Confidence 99999999999999999999999999999999998874 47899999999998765 8999999999999999987764
No 277
>cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein.
Probab=100.00 E-value=1.8e-41 Score=339.68 Aligned_cols=196 Identities=29% Similarity=0.405 Sum_probs=158.5
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEc-ccCcCC-cccH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVT-QDTSLL-HRSI 450 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~-Q~~~lf-~~ti 450 (604)
+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++|++ |++.+| ..|+
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i~~~~~~~~~~~~~~tv 112 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKR-RKKFLRRIGVVFGQKTQLWWDLPV 112 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccc-chhhcccEEEEcCCccccCCCCcH
Confidence 4699999999999999999999999999999999999999999999999986542 345678999997 667776 4599
Q ss_pred HHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEecc
Q psy13349 451 RDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528 (604)
Q Consensus 451 ~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ 528 (604)
+||+.+... ..+.++..+.+ .+.++.+ |++.........||||||||++|||||+.+|+++|||||
T Consensus 113 ~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~-------gl~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDEP 180 (236)
T cd03267 113 IDSFYLLAAIYDLPPARFKKRL-----DELSELL-------DLEELLDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEP 180 (236)
T ss_pred HHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc-------CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 999976421 12233222111 1122211 333333344568999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 529 TSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 529 ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
|++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 181 t~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 236 (236)
T cd03267 181 TIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236 (236)
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEecC
Confidence 999999999999999988753 6899999999998755 8999999999998765
No 278
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=100.00 E-value=2e-41 Score=338.04 Aligned_cols=207 Identities=26% Similarity=0.400 Sum_probs=166.2
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHHHHhccceEEcccCc-CC-c-
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI----KYGEILIDGQNISNVSQESLREQIGMVTQDTS-LL-H- 447 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~----~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~-lf-~- 447 (604)
+++|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +..++.++|++|++. .| +
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~--~~~~~~i~~~~q~~~~~~~~~ 78 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL--SIRGRHIATIMQNPRTAFNPL 78 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh--hhhhheeEEEecCchhhcCcc
Confidence 57899999999999999999999999999999999999 899999999988654 223468999999985 34 3
Q ss_pred ccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc---cccccCCCCCChhHHHHHHHHHHHccCCCe
Q psy13349 448 RSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYD---AHVGEHGIKLSGGQRQRIAIARVILKNAPI 522 (604)
Q Consensus 448 ~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~---t~v~e~g~~LSgGq~QrialARall~~p~i 522 (604)
.|+.||+.+.... ...++.. ..+.+.++.+ |++ +........||||||||++||||++++|++
T Consensus 79 ~t~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~-------~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~v 146 (230)
T TIGR02770 79 FTMGNHAIETLRSLGKLSKQAR-----ALILEALEAV-------GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPF 146 (230)
T ss_pred cCHHHHHHHHHHHcCccHHHHH-----HHHHHHHHHc-------CCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCE
Confidence 4899998653210 1111100 0112222222 443 455667789999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc-CcHHHH
Q psy13349 523 LLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSR 595 (604)
Q Consensus 523 lilDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~-~~~y~~ 595 (604)
+||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+. .||++++|++|++++.|+++++... .+.|.+
T Consensus 147 llLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 223 (230)
T TIGR02770 147 LIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223 (230)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCCHHHH
Confidence 999999999999999999999988753 789999999999886 5999999999999999999999865 344544
No 279
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2e-41 Score=374.71 Aligned_cols=213 Identities=28% Similarity=0.418 Sum_probs=178.8
Q ss_pred EEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccceEEc
Q psy13349 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIGMVT 440 (604)
Q Consensus 362 ~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i~~v~ 440 (604)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+++.++||+
T Consensus 1 ~~nl~~~~~~-~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~v~ 79 (491)
T PRK10982 1 MSNISKSFPG-VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISMVH 79 (491)
T ss_pred CCceEEEeCC-EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEEEe
Confidence 4689999975 579999999999999999999999999999999999999999999999999876554 44677899999
Q ss_pred ccCcCCcc-cHHHHHhcCCCC-----CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 441 QDTSLLHR-SIRDNILYGRPD-----ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 441 Q~~~lf~~-ti~eNi~~g~~~-----~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
|++.+|.. |++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 80 q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgGq~qrv~lA~ 147 (491)
T PRK10982 80 QELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL-------DIDIDPRAKVATLSVSQMQMIEIAK 147 (491)
T ss_pred cccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc-------CCCCCccCchhhCCHHHHHHHHHHH
Confidence 99987754 999999876421 12222111 123333332 6665566677899999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 222 (491)
T PRK10982 148 AFSYNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLT 222 (491)
T ss_pred HHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCC
Confidence 9999999999999999999999999999998875 47899999999998765 8999999999999999987763
No 280
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=6.9e-42 Score=308.87 Aligned_cols=193 Identities=30% Similarity=0.473 Sum_probs=167.6
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHH
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIR 451 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 451 (604)
+.++|+++||++.+||.++|+||||||||||+|.++-+.+|++|++++.|.+++.++++.+|.+|+|+-|.|.||.+||.
T Consensus 15 ~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~pea~Rq~VsY~~Q~paLfg~tVe 94 (223)
T COG4619 15 DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVE 94 (223)
T ss_pred CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccChHHHHHHHHHHHcCccccccchh
Confidence 45799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEec
Q psy13349 452 DNILYGR----PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527 (604)
Q Consensus 452 eNi~~g~----~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE 527 (604)
||+-|-- ...+.+...+.++.+++ -++.+..+..+||||||||+||+|-|---|+||+|||
T Consensus 95 DNlifP~~~r~rr~dr~aa~~llar~~l---------------~~~~L~k~it~lSGGE~QriAliR~Lq~~P~ILLLDE 159 (223)
T COG4619 95 DNLIFPWQIRNRRPDRAAALDLLARFAL---------------PDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDE 159 (223)
T ss_pred hccccchHHhccCCChHHHHHHHHHcCC---------------chhhhcchhhhccchHHHHHHHHHHhhcCCceEEecC
Confidence 9998742 11222222222222221 1456677788999999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhH-HhhcCeEEEEeCCEEeE
Q psy13349 528 ATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLST-ISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 528 ~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~-~~~~d~i~vl~~G~iv~ 579 (604)
|||+||+.+.+.|.+.|.++- ++..++.|||+... ++.+|+++.+..|++-+
T Consensus 160 ~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 160 ITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred chhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 999999999999999998875 57899999999987 88899999999998643
No 281
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=3.6e-41 Score=373.35 Aligned_cols=212 Identities=26% Similarity=0.409 Sum_probs=177.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i~ 437 (604)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++++
T Consensus 4 ~l~~~~l~~~~~~-~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 82 (501)
T PRK11288 4 YLSFDGIGKTFPG-VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGVA 82 (501)
T ss_pred eEEEeeeEEEECC-EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCCEE
Confidence 4899999999975 469999999999999999999999999999999999999999999999999875543 45678899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCC-C----CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRP-D----ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~-~----~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
||+|++.+|+. |++||+.++.. . .+..+..+ .+.++++.+ |++........+||||||||++
T Consensus 83 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgGq~qrv~ 150 (501)
T PRK11288 83 IIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL-------GVDIDPDTPLKYLSIGQRQMVE 150 (501)
T ss_pred EEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc-------CCCCCcCCchhhCCHHHHHHHH
Confidence 99999998875 99999998632 1 11111111 123333333 5554445566789999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
|||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.++.
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~ 224 (501)
T PRK11288 151 IAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDD 224 (501)
T ss_pred HHHHHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCc
Confidence 9999999999999999999999999999999998875 47899999999998765 899999999999977653
No 282
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=100.00 E-value=5.7e-41 Score=316.79 Aligned_cols=159 Identities=37% Similarity=0.563 Sum_probs=147.7
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccceE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i~~ 438 (604)
++++|++++|++ +++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +..++.++|
T Consensus 1 l~~~~l~~~~~~-~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~ 79 (163)
T cd03216 1 LELRGITKRFGG-VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAM 79 (163)
T ss_pred CEEEEEEEEECC-eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEE
Confidence 478999999975 479999999999999999999999999999999999999999999999999988765 346778999
Q ss_pred EcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 439 VTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
++| |||||+||++||||+++
T Consensus 80 ~~q------------------------------------------------------------LS~G~~qrl~laral~~ 99 (163)
T cd03216 80 VYQ------------------------------------------------------------LSVGERQMVEIARALAR 99 (163)
T ss_pred EEe------------------------------------------------------------cCHHHHHHHHHHHHHhc
Confidence 999 99999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeE
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAE 579 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~ 579 (604)
+|++++|||||++||+.+.+.+.+.+++.. +++|+|++||+++.+. .||++++|++|++++
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 999999999999999999999999998875 4789999999999775 499999999999975
No 283
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=2.8e-41 Score=329.84 Aligned_cols=194 Identities=23% Similarity=0.355 Sum_probs=161.6
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||.++.. ....++++++|+
T Consensus 2 l~~~~l~~~~~~-~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~-~~~~~~~~i~~~ 79 (200)
T PRK13540 2 LDVIELDFDYHD-QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKK-DLCTYQKQLCFV 79 (200)
T ss_pred EEEEEEEEEeCC-eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCcccc-CHHHHHhheEEe
Confidence 689999999975 569999999999999999999999999999999999999999999999998864 345678899999
Q ss_pred cccCcCC-cccHHHHHhcCCC-CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 440 TQDTSLL-HRSIRDNILYGRP-DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 440 ~Q~~~lf-~~ti~eNi~~g~~-~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
+|++.++ ..|++||+.++.. ...+.+ +.+.++.+ |+..........|||||+||++||||++
T Consensus 80 ~q~~~~~~~~tv~~~~~~~~~~~~~~~~---------~~~~l~~~-------~l~~~~~~~~~~LS~G~~~rv~laral~ 143 (200)
T PRK13540 80 GHRSGINPYLTLRENCLYDIHFSPGAVG---------ITELCRLF-------SLEHLIDYPCGLLSSGQKRQVALLRLWM 143 (200)
T ss_pred ccccccCcCCCHHHHHHHHHhcCcchHH---------HHHHHHHc-------CCchhhhCChhhcCHHHHHHHHHHHHHh
Confidence 9999987 4699999987631 111112 23333332 2222233334579999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEE
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIV 571 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~v 571 (604)
++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+.+.+..||.-.+
T Consensus 144 ~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~d~~~~ 198 (200)
T PRK13540 144 SKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLNKADYEEY 198 (200)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhccccchhhc
Confidence 9999999999999999999999999998864 57899999999999999987543
No 284
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=1.7e-41 Score=307.34 Aligned_cols=209 Identities=27% Similarity=0.431 Sum_probs=175.5
Q ss_pred eEEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH---HH
Q psy13349 359 KIFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---SL 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~---~~ 432 (604)
.|++++++.+-++ .-.+|++|+|.|++||.+|||||||||||||+-+++|+-+|++|+|.+.|+++..++.+ .+
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~~ 85 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAAL 85 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHHh
Confidence 5788888887764 24699999999999999999999999999999999999999999999999999988854 34
Q ss_pred h-ccceEEcccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHH
Q psy13349 433 R-EQIGMVTQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQR 507 (604)
Q Consensus 433 r-~~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~ 507 (604)
| +++|+|+|..+|.+. |-.||+..-.. +...+... .+.+++.. .|+...+..-..+|||||+
T Consensus 86 R~~~vGfVFQSF~Lip~ltAlENV~lPleL~ge~~~~~~~------~A~~lL~~-------vGLg~Rl~HyP~qLSGGEQ 152 (228)
T COG4181 86 RARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRA------GAKALLEA-------VGLGKRLTHYPAQLSGGEQ 152 (228)
T ss_pred hccceeEEEEeeeccccchhhhhccchhhhcCCccccHHH------HHHHHHHH-------hCcccccccCccccCchHH
Confidence 4 789999999998754 99999986421 11111111 11222222 2777777777789999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
||+||||||...|++|+-||||.+||.+|.++|.+.+..+. .+.|.++|||+.....+|||++.|++|++++.
T Consensus 153 QRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 153 QRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227 (228)
T ss_pred HHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHHhhhheeeeecceeccC
Confidence 99999999999999999999999999999999999987654 48899999999999999999999999999864
No 285
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=4e-41 Score=372.23 Aligned_cols=212 Identities=22% Similarity=0.284 Sum_probs=178.2
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 3 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~~ 81 (490)
T PRK10938 3 SLQISQGTFRLSD-TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSD 81 (490)
T ss_pred eEEEEeEEEEcCC-eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhce
Confidence 3889999999975 459999999999999999999999999999999999999999999999988876666677788999
Q ss_pred EcccCcC--C-------cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 439 VTQDTSL--L-------HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 439 v~Q~~~l--f-------~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
++|++.+ + ..|++||+.++. ..++++.++++.. |++........+||||||||
T Consensus 82 ~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~----------------~l~~~~~~~~~~LSgG~~qr 143 (490)
T PRK10938 82 EWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQF----------------GITALLDRRFKYLSTGETRK 143 (490)
T ss_pred eccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHc----------------CCHhhhhCCcccCCHHHHHH
Confidence 9998753 2 348888876531 1122233333333 44444445567899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++..|+++++.
T Consensus 144 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 223 (490)
T PRK10938 144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEIL 223 (490)
T ss_pred HHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998875 47899999999998765 8999999999999999998876
Q ss_pred hc
Q psy13349 588 KK 589 (604)
Q Consensus 588 ~~ 589 (604)
+.
T Consensus 224 ~~ 225 (490)
T PRK10938 224 QQ 225 (490)
T ss_pred cc
Confidence 53
No 286
>KOG0060|consensus
Probab=100.00 E-value=5.8e-38 Score=330.76 Aligned_cols=417 Identities=17% Similarity=0.171 Sum_probs=301.3
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 142 TKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVI-WISAYIYTLIYFIPRLNKTAESQATARSLMT 220 (604)
Q Consensus 142 srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (604)
+|+++|++...+.+......++.+.+.++....-++....+++.+.+. .+.+..++.+.+.+.+.+...++++..+++.
T Consensus 186 QrltqDv~kf~~~l~sl~s~l~~a~~di~~Y~~~l~~s~g~~gp~~i~~Yf~~~~vi~~~L~~pI~~l~~~qeklEGdfR 265 (659)
T KOG0060|consen 186 QRLTQDVEKFCRQLSSLYSNLLKAPFDLVYYTFRLFESAGWLGPVSIFAYFLIGTVINKTLRGPIVKLTVEQEKLEGDFR 265 (659)
T ss_pred HHHhHHHHHHHHHHHHHHHhhhccceeeehhhhHHhhhcCcccHHHHHHHHHHHHHHHhhhccchhHHHHHHHHhhcchh
Confidence 478888888877776666666555555544444444444444444433 3334555667777778888888888888888
Q ss_pred HHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----hhCccc
Q psy13349 221 GRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLW----TKGILG 296 (604)
Q Consensus 221 ~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv----~~g~lt 296 (604)
-.-.+...+.+.|-.|+.++.|.......+++..+...+...+..+.+.+.+++..+..++..++.+.-+ ..+.++
T Consensus 266 y~h~rlr~NaE~iAFY~g~~~E~~~~~~~f~~Lv~~l~~l~~~r~~l~f~~n~~~Ylg~ilsy~vi~~p~Fs~h~y~~~s 345 (659)
T KOG0060|consen 266 YKHSRLRVNAEEIAFYRGGQVEHQRTDQRFRNLVQHLRELMSFRFWLGFIDNIFDYLGGILSYVVIAIPFFSGHVYDDLS 345 (659)
T ss_pred hheeeeeecchhhhhhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhheeeEEeeeeecccccCCcC
Confidence 8888889999999999999999988888888888887777777777777766666554443222111111 234566
Q ss_pred HHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----------ccc--------Ccccc
Q psy13349 297 IGAVAAATAMSLR----LN---GISHWVMWEIAALFESIGTIQDGMNMLSKKYK----------IVD--------NYNAK 351 (604)
Q Consensus 297 ~G~~~~~~~~~~~----l~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----------~~~--------~~~~~ 351 (604)
..++...+..... +. +.+......+..+..-..++.+..+.+++... ... .++..
T Consensus 346 ~aEL~~~i~~na~~~i~Li~~f~~l~~~~~~ls~lsGyt~Ri~el~~~l~d~~~~~~~~~~~~~~~~E~~~~l~~~~G~~ 425 (659)
T KOG0060|consen 346 PAELSGLISNNAFVFIYLISAFGRLVDLSRDLSRLSGYTHRIGELMEVLDDLSSGSQECTMEEEELGEAEWGLSLPPGSG 425 (659)
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHhhhHHHhhhHHHHHHHHHHHHHHhccCCcchhhhhhhhhhhhhccCCCCCCc
Confidence 6665554322111 11 11112222333333334444444444433210 000 00111
Q ss_pred cccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH
Q psy13349 352 RLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430 (604)
Q Consensus 352 ~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~ 430 (604)
...+.++.|++++|++.-|+ +..+.+|+||+|+.|+.+.|.||||||||+|++.+.|+++..+|++.--...-.
T Consensus 426 ~~~~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~~~----- 500 (659)
T KOG0060|consen 426 KAEPADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDGGP----- 500 (659)
T ss_pred ccccccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccCCC-----
Confidence 12234567999999999988 444677899999999999999999999999999999999999999975332111
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCC-------CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccc-cCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGR-------PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVG-EHGIKL 502 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~-------~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~-e~g~~L 502 (604)
+.+-||||.|+.-.||+||-+.|-. ..++|+++...++.+++...++..- |+|+++. +-...|
T Consensus 501 ---~~lfflPQrPYmt~GTLRdQvIYP~~~~~~~~~~~~d~~i~r~Le~v~L~hl~~r~g------gld~~~~~dW~dvL 571 (659)
T KOG0060|consen 501 ---KDLFFLPQRPYMTLGTLRDQVIYPLKAEDMDSKSASDEDILRILENVQLGHLLEREG------GLDQQVDWDWMDVL 571 (659)
T ss_pred ---CceEEecCCCCccccchhheeeccCccccccccCCCHHHHHHHHHHhhhhhHHHHhC------CCCchhhccHHhhc
Confidence 4599999999999999999999861 1478999999999999988766542 8998775 557799
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
|+||+||+|.||-++.+|++-||||+|||+|.+.|..+.+.+++. +.|.|-|+||-+..+.-|.++-|+.
T Consensus 572 S~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~kfHd~~L~~~g 641 (659)
T KOG0060|consen 572 SPGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLWKFHDYVLRMDG 641 (659)
T ss_pred CHHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHHhhhhEEEEecC
Confidence 999999999999999999999999999999999999999999775 7999999999999999999999975
No 287
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-41 Score=313.68 Aligned_cols=214 Identities=30% Similarity=0.470 Sum_probs=183.5
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
|+.+|+|++-.+ +.+|+++||++++||..||+||||||||||+|.|+|...|++|++.++|.++.++++.++-++-+..
T Consensus 2 i~a~nls~~~~G-r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~~~lA~~raVl 80 (259)
T COG4559 2 IRAENLSYSLAG-RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELARHRAVL 80 (259)
T ss_pred eeeeeeEEEeec-ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCHHHHHHHhhhc
Confidence 688999998764 5699999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcC-CcccHHHHHhcCC-CC-----CCHHH--HHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 440 TQDTSL-LHRSIRDNILYGR-PD-----ASECE--LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 440 ~Q~~~l-f~~ti~eNi~~g~-~~-----~~~~~--i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
||+..+ |+-|++|-+.+|+ |. ..+++ ...++..+++.. .-+..-..|||||+||+
T Consensus 81 pQ~s~laFpFtv~eVV~mGr~p~~~g~~~~e~~~i~~~ala~~d~~~----------------la~R~y~~LSGGEqQRV 144 (259)
T COG4559 81 PQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQALAATDLSG----------------LAGRDYRTLSGGEQQRV 144 (259)
T ss_pred ccCcccccceEHHHHHHhcccccccCCCchhhHHHHHHHHHHcChhh----------------hhccchhhcCchHHHHH
Confidence 999886 8999999999996 32 11222 233334444332 22334458999999999
Q ss_pred HHHHHHcc------CCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecC
Q psy13349 511 AIARVILK------NAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 511 alARall~------~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
.+||.|.+ ++++|+||||||+||..-+..+++..+++. ++..|++|-|+|+... .||||++|.+||++..|+
T Consensus 145 qlARvLaQl~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~ 224 (259)
T COG4559 145 QLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGS 224 (259)
T ss_pred HHHHHHHHccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCC
Confidence 99999986 345899999999999999999999999886 5789999999999765 589999999999999999
Q ss_pred hhHHhhcC
Q psy13349 583 HLDLLKKN 590 (604)
Q Consensus 583 ~~~l~~~~ 590 (604)
+++.++.+
T Consensus 225 p~~vlt~E 232 (259)
T COG4559 225 PQDVLTDE 232 (259)
T ss_pred HHHhcCHH
Confidence 99988654
No 288
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=9.6e-41 Score=327.80 Aligned_cols=194 Identities=24% Similarity=0.354 Sum_probs=162.9
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|+++.|++ +.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .. +++.++|+
T Consensus 3 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--~~-~~~~~~~~ 78 (207)
T PRK13539 3 LEGEDLACVRGG-RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD--PD-VAEACHYL 78 (207)
T ss_pred EEEEeEEEEECC-eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc--hh-hHhhcEEe
Confidence 789999999975 469999999999999999999999999999999999999999999999998652 22 78899999
Q ss_pred cccCcCC-cccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLL-HRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf-~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+|++.++ ..|++||+.+... ...++++.++++..++.+ ........||||||||++||||+
T Consensus 79 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~----------------~~~~~~~~LS~G~~qrl~la~al 142 (207)
T PRK13539 79 GHRNAMKPALTVAENLEFWAAFLGGEELDIAAALEAVGLAP----------------LAHLPFGYLSAGQKRRVALARLL 142 (207)
T ss_pred cCCCcCCCCCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHH----------------HHcCChhhcCHHHHHHHHHHHHH
Confidence 9988776 5699999976432 122334444444444432 22233458999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
+++|+++||||||++||+.+.+.+.+.|++.. +++|+|++||+++.++. |+++.++.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~-~~~~~~~~ 200 (207)
T PRK13539 143 VSNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG-ARELDLGP 200 (207)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc-CcEEeecC
Confidence 99999999999999999999999999998764 57999999999999988 99988854
No 289
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-40 Score=328.51 Aligned_cols=196 Identities=22% Similarity=0.328 Sum_probs=162.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..++.++|
T Consensus 11 ~l~~~~l~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~---~~~~~i~~ 86 (214)
T PRK13543 11 LLAAHALAFSRNE-EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG---DRSRFMAY 86 (214)
T ss_pred eEEEeeEEEecCC-ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch---hhhhceEE
Confidence 5899999999975 4699999999999999999999999999999999999999999999999988642 34567999
Q ss_pred EcccCcCCcc-cHHHHHhcCCC--CCC-HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP--DAS-ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~--~~~-~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
++|++.+|+. |++||+.++.. ... ++...+.++.. |+..........||||||||++|||
T Consensus 87 ~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~qrv~lar 150 (214)
T PRK13543 87 LGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIV----------------GLAGYEDTLVRQLSAGQKKRLALAR 150 (214)
T ss_pred eecCcccccCCcHHHHHHHHHHhcCCcHHHHHHHHHHHc----------------CChhhccCChhhCCHHHHHHHHHHH
Confidence 9999999876 99999976432 111 11222222222 3333334455689999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeC
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDN 574 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~ 574 (604)
|++++|++++|||||++||+++.+.+.+.+++.. +++|+|++||+++.+.. ||++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 9999999999999999999999999999998764 47899999999998755 899999864
No 290
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.3e-40 Score=369.09 Aligned_cols=214 Identities=26% Similarity=0.416 Sum_probs=177.1
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHH-Hhccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI--KYGEILIDGQNISNVSQES-LREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~~~~~~~~~~-~r~~i 436 (604)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .++.+
T Consensus 2 l~i~~l~~~~~~-~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (500)
T TIGR02633 2 LEMKGIVKTFGG-VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAGI 80 (500)
T ss_pred EEEEeEEEEeCC-eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhCCE
Confidence 689999999964 5699999999999999999999999999999999999987 7999999999998776544 46789
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc-ccCCCCCChhHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRPD------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV-GEHGIKLSGGQRQ 508 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~~------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v-~e~g~~LSgGq~Q 508 (604)
+||||++.+|+. |++||+.++... .+.++..+ .+.+.++.+ |++... .....+|||||||
T Consensus 81 ~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~~LSgG~~q 148 (500)
T TIGR02633 81 VIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL-------QLDADNVTRPVGDYGGGQQQ 148 (500)
T ss_pred EEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc-------CCCCCcccCchhhCCHHHHH
Confidence 999999988865 999999886421 11111111 122333332 444322 2335689999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHH
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 586 (604)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.++.
T Consensus 149 rv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (500)
T TIGR02633 149 LVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTM 228 (500)
T ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccC
Confidence 9999999999999999999999999999999999998865 47899999999998865 899999999999999987654
No 291
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=4.9e-41 Score=374.67 Aligned_cols=218 Identities=33% Similarity=0.487 Sum_probs=179.1
Q ss_pred eEEEEEEEEEeCC----------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q psy13349 359 KIFFKNVSFSYDQ----------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS 428 (604)
Q Consensus 359 ~i~~~~vsf~y~~----------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~ 428 (604)
.++++|+++.|++ ++++|+|+||+|++||++||+||||||||||+++|+|++ |++|+|.++|.++...+
T Consensus 275 ~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~-~~~G~i~~~g~~i~~~~ 353 (529)
T PRK15134 275 LLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLI-NSQGEIWFDGQPLHNLN 353 (529)
T ss_pred cccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcC-CCCcEEEECCEEccccc
Confidence 4899999999962 356999999999999999999999999999999999998 48999999999987765
Q ss_pred HH---HHhccceEEcccC--cCCc-ccHHHHHhcCCC----CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-ccccc
Q psy13349 429 QE---SLREQIGMVTQDT--SLLH-RSIRDNILYGRP----DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGE 497 (604)
Q Consensus 429 ~~---~~r~~i~~v~Q~~--~lf~-~ti~eNi~~g~~----~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e 497 (604)
.. .+|+.++||||++ .+|+ .|++||+.++.. ..+..+.. ..+.++++.+ |+. .....
T Consensus 354 ~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~~l~~~-------~l~~~~~~~ 421 (529)
T PRK15134 354 RRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQRE-----QQVIAVMEEV-------GLDPETRHR 421 (529)
T ss_pred hhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHH-----HHHHHHHHHc-------CCCHHHHhc
Confidence 43 3477899999998 3665 499999987421 01111111 1122333322 554 23455
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeC
Q psy13349 498 HGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDN 574 (604)
Q Consensus 498 ~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~ 574 (604)
...+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++
T Consensus 422 ~~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~ 501 (529)
T PRK15134 422 YPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQ 501 (529)
T ss_pred CCccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEEC
Confidence 6679999999999999999999999999999999999999999999988752 7899999999998765 999999999
Q ss_pred CEEeEecChhHHhhc
Q psy13349 575 GCVAEEGSHLDLLKK 589 (604)
Q Consensus 575 G~iv~~g~~~~l~~~ 589 (604)
|++++.|+++++.+.
T Consensus 502 G~i~~~~~~~~~~~~ 516 (529)
T PRK15134 502 GEVVEQGDCERVFAA 516 (529)
T ss_pred CEEEEEcCHHHHhcC
Confidence 999999999998764
No 292
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=100.00 E-value=6.9e-41 Score=358.91 Aligned_cols=221 Identities=29% Similarity=0.473 Sum_probs=178.4
Q ss_pred eEEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC----ccEEEECCEeCCCCCHHH
Q psy13349 359 KIFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK----YGEILIDGQNISNVSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~----~G~I~i~g~~~~~~~~~~ 431 (604)
-++++|++..|... .++++||||++.+||++||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 58999999999642 25999999999999999999999999999999999999988 799999999998888755
Q ss_pred Hh----ccceEEcccCc-CCcc--cHHHHHh----cCCCCCC---HHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc--
Q psy13349 432 LR----EQIGMVTQDTS-LLHR--SIRDNIL----YGRPDAS---ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV-- 495 (604)
Q Consensus 432 ~r----~~i~~v~Q~~~-lf~~--ti~eNi~----~g~~~~~---~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v-- 495 (604)
+| +.|++|||+|. .++- ||.+-|. ...+... .++..+.++.+ |+....
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~V----------------gl~~~~~~ 148 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQV----------------GLPDPERR 148 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHc----------------CCCChhhh
Confidence 43 66999999986 4543 5554443 2211111 11222222222 222222
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEE
Q psy13349 496 GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVL 572 (604)
Q Consensus 496 ~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl 572 (604)
..-...||||||||+.||+||..+|++||+||||.+||+.++.+|++.|+++. .+.++|+|||++..+.. ||||+||
T Consensus 149 ~~yPheLSGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm 228 (539)
T COG1123 149 DRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVM 228 (539)
T ss_pred ccCCcccCchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEE
Confidence 33567999999999999999999999999999999999999999999999876 58999999999998766 8999999
Q ss_pred eCCEEeEecChhHHhhcC-cHHHH
Q psy13349 573 DNGCVAEEGSHLDLLKKN-GLYSR 595 (604)
Q Consensus 573 ~~G~iv~~g~~~~l~~~~-~~y~~ 595 (604)
++|++||.|+.+++.++. ..|.+
T Consensus 229 ~~G~iVE~G~~~~i~~~p~hpYT~ 252 (539)
T COG1123 229 YKGEIVETGPTEEILSNPQHPYTR 252 (539)
T ss_pred ECCEEEEecCHHHHHhccCCcccH
Confidence 999999999999999863 33544
No 293
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=100.00 E-value=7.9e-41 Score=326.16 Aligned_cols=193 Identities=23% Similarity=0.325 Sum_probs=158.9
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|+++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..+++.++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-~~~~~~i~~~ 78 (198)
T TIGR01189 1 LAARNLACSRGE-RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-DEPHRNILYL 78 (198)
T ss_pred CEEEEEEEEECC-EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-HHhhhheEEe
Confidence 478999999975 56999999999999999999999999999999999999999999999999987664 4567889999
Q ss_pred cccCcCCc-ccHHHHHhcCCCCCC--HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSLLH-RSIRDNILYGRPDAS--ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~lf~-~ti~eNi~~g~~~~~--~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+|++.+|+ .|++||+.++.+... ++++.++++..++++ .......+||||||||++||||+
T Consensus 79 ~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~l~~~~l~~----------------~~~~~~~~LS~G~~qrv~la~al 142 (198)
T TIGR01189 79 GHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTG----------------FEDLPAAQLSAGQQRRLALARLW 142 (198)
T ss_pred ccCcccccCCcHHHHHHHHHHHcCCcHHHHHHHHHHcCCHH----------------HhcCChhhcCHHHHHHHHHHHHH
Confidence 99998886 599999987532111 223444444444433 22334468999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEE
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIV 571 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~v 571 (604)
+++|++++|||||++||+.+.+.+.+.|.+.. +++|+|++||+...+. |++++.
T Consensus 143 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~-~~~~~~ 197 (198)
T TIGR01189 143 LSRAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGLV-EARELR 197 (198)
T ss_pred hcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEccccccc-ceEEee
Confidence 99999999999999999999999999998864 5789999999985433 355543
No 294
>PRK10261 glutathione transporter ATP-binding protein; Provisional
Probab=100.00 E-value=8.7e-41 Score=378.25 Aligned_cols=220 Identities=28% Similarity=0.391 Sum_probs=177.3
Q ss_pred ceEEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC---------
Q psy13349 358 GKIFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS--------- 425 (604)
Q Consensus 358 ~~i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~--------- 425 (604)
..++++|++++|++ +.++++||||++++||++|||||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 11 ~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~ 90 (623)
T PRK10261 11 DVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIEL 90 (623)
T ss_pred ceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEecccccccccc
Confidence 36999999999963 246999999999999999999999999999999999999999999999997552
Q ss_pred -CCCHH---HHh-ccceEEcccC--cCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc--
Q psy13349 426 -NVSQE---SLR-EQIGMVTQDT--SLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-- 492 (604)
Q Consensus 426 -~~~~~---~~r-~~i~~v~Q~~--~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-- 492 (604)
+.+.. .+| +.|+||+|+| .+++. |++||+.++.. ..+..+..+ .+.+.++.+ |+.
T Consensus 91 ~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gL~~~ 158 (623)
T PRK10261 91 SEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMV-----EAKRMLDQV-------RIPEA 158 (623)
T ss_pred ccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC-------CCCCh
Confidence 22222 233 5799999998 57764 99999987521 122222111 112222221 442
Q ss_pred -cccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEccChhHHhh-cCe
Q psy13349 493 -AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-K-GKTVIAIAHRLSTISA-MDR 568 (604)
Q Consensus 493 -t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~-~~t~i~itH~l~~~~~-~d~ 568 (604)
........+||||||||++|||||+.+|++|||||||++||+.+++.+.+.++++. + ++|+|+|||+++.+.. |||
T Consensus 159 ~~~~~~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adr 238 (623)
T PRK10261 159 QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADR 238 (623)
T ss_pred hhHHhCCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCE
Confidence 33556677999999999999999999999999999999999999999999998875 3 7899999999998755 999
Q ss_pred EEEEeCCEEeEecChhHHhhc
Q psy13349 569 LIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 569 i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|++|++|++++.|+++++...
T Consensus 239 i~vl~~G~i~~~g~~~~~~~~ 259 (623)
T PRK10261 239 VLVMYQGEAVETGSVEQIFHA 259 (623)
T ss_pred EEEeeCCeecccCCHHHhhcC
Confidence 999999999999999998753
No 295
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=100.00 E-value=3.7e-40 Score=367.62 Aligned_cols=219 Identities=28% Similarity=0.432 Sum_probs=176.6
Q ss_pred eEEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCCCCHH
Q psy13349 359 KIFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISNVSQE 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~~~~~ 430 (604)
.++++|++++|++ .+++|+|+||++++||++||+||||||||||+++|+|+++| ++|+|.++|.++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 4899999999964 24799999999999999999999999999999999999987 799999999999876643
Q ss_pred H---Hh-ccceEEcccCc--CCc-ccHHHHHhcCC---CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc---cccc
Q psy13349 431 S---LR-EQIGMVTQDTS--LLH-RSIRDNILYGR---PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA---HVGE 497 (604)
Q Consensus 431 ~---~r-~~i~~v~Q~~~--lf~-~ti~eNi~~g~---~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t---~v~e 497 (604)
+ +| +.++||+|++. +++ .|++||+.++. ...+.++..+ .+++.++.+ |++. ....
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~ 152 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARG-----EILNCLDRV-------GIRQAAKRLTD 152 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHC-------CCCChHHHHhh
Confidence 2 33 57999999985 444 48999986421 1112211111 112222222 4432 2345
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeC
Q psy13349 498 HGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDN 574 (604)
Q Consensus 498 ~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~ 574 (604)
...+||||||||++|||||+.+|++||||||||+||+.+...+.+.++++. .++|+|+|||+++.+.. ||||++|++
T Consensus 153 ~~~~LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~ 232 (529)
T PRK15134 153 YPHQLSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQN 232 (529)
T ss_pred CCcccCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEEC
Confidence 567899999999999999999999999999999999999999999998865 37899999999998765 899999999
Q ss_pred CEEeEecChhHHhhc
Q psy13349 575 GCVAEEGSHLDLLKK 589 (604)
Q Consensus 575 G~iv~~g~~~~l~~~ 589 (604)
|++++.|+++++.+.
T Consensus 233 G~i~~~g~~~~~~~~ 247 (529)
T PRK15134 233 GRCVEQNRAATLFSA 247 (529)
T ss_pred CEEEEeCCHHHHhhC
Confidence 999999999998754
No 296
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=1.2e-40 Score=327.48 Aligned_cols=191 Identities=32% Similarity=0.475 Sum_probs=162.6
Q ss_pred eEEEEEEEEEeCCC--------CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH
Q psy13349 359 KIFFKNVSFSYDQK--------HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~~--------~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~ 430 (604)
-++++|+++.|+.. ..+++||||+|++||+++|||+|||||||+.++++|+++|++|+|.++|+|+..++
T Consensus 4 ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~-- 81 (268)
T COG4608 4 LLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS-- 81 (268)
T ss_pred eEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc--
Confidence 47899999999642 26899999999999999999999999999999999999999999999999987665
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHH-HHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI-FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~-~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
.+...+++.+.++.+++.+ +.. .....||||||||
T Consensus 82 ----------------------------~~~~~~~v~elL~~Vgl~~~~~~----------------ryPhelSGGQrQR 117 (268)
T COG4608 82 ----------------------------KEERRERVLELLEKVGLPEEFLY----------------RYPHELSGGQRQR 117 (268)
T ss_pred ----------------------------hhHHHHHHHHHHHHhCCCHHHhh----------------cCCcccCchhhhh
Confidence 1112345666666665433 233 3345899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHH
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l 586 (604)
++|||||.-+|++++.|||||+||...+++|.+.+.++. .+-|.++|||+++.++. ||||.||..|+|||.|+.+++
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~~~~~ 197 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEV 197 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecCHHHH
Confidence 999999999999999999999999999999999998775 38899999999999988 899999999999999999999
Q ss_pred hhc-CcHHHH
Q psy13349 587 LKK-NGLYSR 595 (604)
Q Consensus 587 ~~~-~~~y~~ 595 (604)
.++ .-.|.+
T Consensus 198 ~~~p~HpYTk 207 (268)
T COG4608 198 FSNPLHPYTK 207 (268)
T ss_pred hhCCCCHHHH
Confidence 875 334644
No 297
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=1.5e-40 Score=370.07 Aligned_cols=218 Identities=26% Similarity=0.449 Sum_probs=175.5
Q ss_pred eEEEEEEEEEeCC----CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC-CEe---CCCCC--
Q psy13349 359 KIFFKNVSFSYDQ----KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID-GQN---ISNVS-- 428 (604)
Q Consensus 359 ~i~~~~vsf~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~-g~~---~~~~~-- 428 (604)
.++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |.+ +...+
T Consensus 279 ~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~ 358 (520)
T TIGR03269 279 IIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPD 358 (520)
T ss_pred eEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCccccccccchh
Confidence 5999999999953 2469999999999999999999999999999999999999999999996 643 33332
Q ss_pred -HHHHhccceEEcccCcCCcc-cHHHHHhcCCC-CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-----ccccCCC
Q psy13349 429 -QESLREQIGMVTQDTSLLHR-SIRDNILYGRP-DASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-----HVGEHGI 500 (604)
Q Consensus 429 -~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~-~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-----~v~e~g~ 500 (604)
...++++++|+||++.+|+. |++||+.++.. ....++.. ..+.++++.+ |++. .......
T Consensus 359 ~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~~l~~~-------~l~~~~~~~~~~~~~~ 426 (520)
T TIGR03269 359 GRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELAR-----MKAVITLKMV-------GFDEEKAEEILDKYPD 426 (520)
T ss_pred hHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHH-----HHHHHHHHhC-------CCCCccchhhhhCChh
Confidence 23456789999999988865 99999976311 11111110 1122233322 4432 3455667
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-K-GKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + ++|+|+|||+++.+.. ||+|++|++|++
T Consensus 427 ~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i 506 (520)
T TIGR03269 427 ELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKI 506 (520)
T ss_pred hCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 899999999999999999999999999999999999999999998875 3 7899999999998865 899999999999
Q ss_pred eEecChhHHhh
Q psy13349 578 AEEGSHLDLLK 588 (604)
Q Consensus 578 v~~g~~~~l~~ 588 (604)
++.|+++++.+
T Consensus 507 ~~~g~~~~~~~ 517 (520)
T TIGR03269 507 VKIGDPEEIVE 517 (520)
T ss_pred EEECCHHHHHh
Confidence 99999888754
No 298
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=100.00 E-value=9.8e-41 Score=323.35 Aligned_cols=180 Identities=28% Similarity=0.419 Sum_probs=145.2
Q ss_pred CCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhccceEEcccC--cCC
Q psy13349 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN--VSQESLREQIGMVTQDT--SLL 446 (604)
Q Consensus 371 ~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~--~~~~~~r~~i~~v~Q~~--~lf 446 (604)
+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...+++.++|++|++ .+|
T Consensus 3 ~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 3 GGPEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred CccceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccccchHHHHhhEEEEecChhhccc
Confidence 44579999999999999999999999999999999999999999999999999852 22346778899999998 478
Q ss_pred cccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEE
Q psy13349 447 HRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524 (604)
Q Consensus 447 ~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ili 524 (604)
+.|++||+.++.. ..++++..+. +++.++.+ |++........+||||||||++|||||+++|+++|
T Consensus 83 ~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 150 (190)
T TIGR01166 83 AADVDQDVAFGPLNLGLSEAEVERR-----VREALTAV-------GASGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLL 150 (190)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc-------CchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 8899999987521 1222222111 11222211 44444445567899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhH
Q psy13349 525 LDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLST 562 (604)
Q Consensus 525 lDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~ 562 (604)
|||||++||+.+.+.+.+.|++.. +++|+|++||+++.
T Consensus 151 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 151 LDEPTAGLDPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 999999999999999999998875 47899999999864
No 299
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=100.00 E-value=2.3e-40 Score=329.07 Aligned_cols=201 Identities=28% Similarity=0.398 Sum_probs=160.5
Q ss_pred EEEEEEEEEeCC------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC--CE--eCCCCCH
Q psy13349 360 IFFKNVSFSYDQ------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID--GQ--NISNVSQ 429 (604)
Q Consensus 360 i~~~~vsf~y~~------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~--g~--~~~~~~~ 429 (604)
++++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++ |. ++..++.
T Consensus 2 l~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~~ 81 (224)
T TIGR02324 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81 (224)
T ss_pred EEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcCH
Confidence 689999999963 1469999999999999999999999999999999999999999999998 42 5555554
Q ss_pred HH---H-hccceEEcccCcCCcc-cHHHHHhcCC--CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccc-cccCCCC
Q psy13349 430 ES---L-REQIGMVTQDTSLLHR-SIRDNILYGR--PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAH-VGEHGIK 501 (604)
Q Consensus 430 ~~---~-r~~i~~v~Q~~~lf~~-ti~eNi~~g~--~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~-v~e~g~~ 501 (604)
.. + ++.++|++|++.+|+. |++||+.+.. ...+.++..+ .+.++++.+ |+... ....+.+
T Consensus 82 ~~~~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~~ 149 (224)
T TIGR02324 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARA-----RARELLARL-------NIPERLWHLPPAT 149 (224)
T ss_pred HHHHHHHhcceEEEecccccCCCccHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CCchhhhhCCccc
Confidence 43 2 4679999999998865 9999997631 1122222111 112233322 44322 2345678
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEE
Q psy13349 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVL 572 (604)
Q Consensus 502 LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl 572 (604)
||||||||++|||||+.+|+++||||||++||+.+.+.+.+.+++.. +++|+|++||+++.+. .||+++.+
T Consensus 150 LS~G~~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~ 222 (224)
T TIGR02324 150 FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDV 222 (224)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEec
Confidence 99999999999999999999999999999999999999999998875 4789999999999886 59999876
No 300
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=100.00 E-value=1.9e-40 Score=329.45 Aligned_cols=195 Identities=27% Similarity=0.436 Sum_probs=160.1
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcC---CcccHHHHHhcC
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSL---LHRSIRDNILYG 457 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~l---f~~ti~eNi~~g 457 (604)
|++++||+++|+||||||||||+++|+|+++|++|+|.+||.++. ..++.++|+||++.+ |+.|++||+.++
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-----~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~ 75 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPG-----KGWRHIGYVPQRHEFAWDFPISVAHTVMSG 75 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccch-----HhhCcEEEecccccccCCCCccHHHHHHhc
Confidence 578999999999999999999999999999999999999998753 346789999999876 456999999875
Q ss_pred CCC-------C---CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEec
Q psy13349 458 RPD-------A---SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527 (604)
Q Consensus 458 ~~~-------~---~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE 527 (604)
... . .++++.++++.. |++........+||||||||++|||||+++|+++||||
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llilDE 139 (223)
T TIGR03771 76 RTGHIGWLRRPCVADFAAVRDALRRV----------------GLTELADRPVGELSGGQRQRVLVARALATRPSVLLLDE 139 (223)
T ss_pred cccccccccCCcHHHHHHHHHHHHHh----------------CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 210 0 111222223222 44444445556899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHH
Q psy13349 528 ATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598 (604)
Q Consensus 528 ~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~ 598 (604)
||++||+.+.+.+.+.+++.. +++|+|++||+++.+. .||+|+++ +|++++.|+++++.+. ..+.+++.
T Consensus 140 P~~~LD~~~~~~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~~~~~~~~~-~~~~~~~~ 210 (223)
T TIGR03771 140 PFTGLDMPTQELLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQDP-APWMTTFG 210 (223)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeecCHHHhcCh-HHHHHHhC
Confidence 999999999999999998875 4789999999999775 48999999 7999999999998765 34666653
No 301
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=100.00 E-value=4.8e-40 Score=373.53 Aligned_cols=217 Identities=28% Similarity=0.446 Sum_probs=187.1
Q ss_pred eEEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH---
Q psy13349 359 KIFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL--- 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~--- 432 (604)
.++++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++...+.+++
T Consensus 4 ~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 83 (648)
T PRK10535 4 LLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQL 83 (648)
T ss_pred EEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHHH
Confidence 48999999999642 469999999999999999999999999999999999999999999999999998876654
Q ss_pred -hccceEEcccCcCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 433 -REQIGMVTQDTSLLHR-SIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 433 -r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
++.++|++|++.+|+. |+.||+.++... .+.++ ....+.++++.+ |+++.+.....+|||||+|
T Consensus 84 ~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~-----~~~~~~~~l~~l-------gl~~~~~~~~~~LS~Gq~q 151 (648)
T PRK10535 84 RREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQ-----RLLRAQELLQRL-------GLEDRVEYQPSQLSGGQQQ 151 (648)
T ss_pred HhccEEEEeCCcccCCCCCHHHHHHHHHHHcCCCHHH-----HHHHHHHHHHHC-------CChhhhcCCcccCCHHHHH
Confidence 5789999999999965 999999874211 11111 112233444443 6777777777899999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHh
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
|++|||||+++|+++||||||++||+.+.+.+.+.++++. +++|++++||+++.++.||++++|++|+++++|+.+|..
T Consensus 152 rv~LAraL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 231 (648)
T PRK10535 152 RVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKV 231 (648)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHhCCEEEEEECCEEEeecCccccc
Confidence 9999999999999999999999999999999999998875 479999999999999999999999999999999998875
No 302
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5e-40 Score=350.14 Aligned_cols=211 Identities=33% Similarity=0.465 Sum_probs=178.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~ 437 (604)
-++++|++++|++ .++|+||||++.+||++|++|+||||||||+|+|+|.|+|++|+|.+||++..-.++.+ ....|+
T Consensus 8 ll~~~~i~K~Fgg-V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~GI~ 86 (500)
T COG1129 8 LLELRGISKSFGG-VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAGIA 86 (500)
T ss_pred eeeeecceEEcCC-ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCCcE
Confidence 4889999999986 47999999999999999999999999999999999999999999999999998777655 556799
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCC------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPD------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
.|.||..|++. ||.|||.+|+.. .+..++.+.++ +.+..+ |.+........+||+||||-+
T Consensus 87 ~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~l-------g~~~~~~~~v~~LsiaqrQ~V 154 (500)
T COG1129 87 TVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL-------GLDIDPDTLVGDLSIAQRQMV 154 (500)
T ss_pred EEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHc-------CCCCChhhhhhhCCHHHHHHH
Confidence 99999999966 999999999742 23344443332 223333 221113333447999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecC
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
+||||+..+++++|||||||+|+....+.+++.+++++ +|.++|+||||++.+. .||||.||.||+.+..++
T Consensus 155 eIArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 155 EIARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 99999999999999999999999999999999999987 6999999999999765 599999999999987766
No 303
>PLN03211 ABC transporter G-25; Provisional
Probab=100.00 E-value=1.3e-40 Score=376.69 Aligned_cols=210 Identities=30% Similarity=0.453 Sum_probs=173.0
Q ss_pred EEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC--ccEEEECCEeCCCCCHHHHhccceEEcc
Q psy13349 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK--YGEILIDGQNISNVSQESLREQIGMVTQ 441 (604)
Q Consensus 364 ~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~--~G~I~i~g~~~~~~~~~~~r~~i~~v~Q 441 (604)
|++++|+ ++++|+|+|+++++||++||+||||||||||+++|+|+.+|+ +|+|.+||.++. ...+++++||+|
T Consensus 73 ~l~~~~~-~~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~----~~~~~~i~yv~Q 147 (659)
T PLN03211 73 DETRQIQ-ERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQILKRTGFVTQ 147 (659)
T ss_pred cccccCC-CCeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECc----hhhccceEEECc
Confidence 3344443 346999999999999999999999999999999999999885 899999999874 235667999999
Q ss_pred cCcCCcc-cHHHHHhcCC----C-CCCHHHHHHHHHHchHHHHHHHh--hhhhhcCCCccccccC-CCCCChhHHHHHHH
Q psy13349 442 DTSLLHR-SIRDNILYGR----P-DASECELFNAAKCAEADIFIKSL--TDEHGRKGYDAHVGEH-GIKLSGGQRQRIAI 512 (604)
Q Consensus 442 ~~~lf~~-ti~eNi~~g~----~-~~~~~~i~~a~~~~~~~~~i~~l--p~~~~~~g~~t~v~e~-g~~LSgGq~Qrial 512 (604)
++.+|+. |++||+.++. | +.++++..+. .++.++.+ ++ ..||.+|++ ...||||||||++|
T Consensus 148 ~~~l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~-----v~~~l~~lgL~~-----~~~t~vg~~~~~~LSgGerqRv~i 217 (659)
T PLN03211 148 DDILYPHLTVRETLVFCSLLRLPKSLTKQEKILV-----AESVISELGLTK-----CENTIIGNSFIRGISGGERKRVSI 217 (659)
T ss_pred ccccCCcCCHHHHHHHHHHhCCCCCCCHHHHHHH-----HHHHHHHcCChh-----hcCceeCCCCCCCcChhhhhHHHH
Confidence 9999965 9999998752 2 2333332211 23334332 22 448888754 67899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhH--HhhcCeEEEEeCCEEeEecChhHHhh
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLST--ISAMDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~--~~~~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
||||+.+|++++|||||++||+.++..+.+.++++. +++|+|+++|+++. .+.+|+|++|++|+++..|+++++.+
T Consensus 218 a~aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~~~~~~~ 296 (659)
T PLN03211 218 AHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGKGSDAMA 296 (659)
T ss_pred HHHHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECCHHHHHH
Confidence 999999999999999999999999999999998876 58999999999974 56699999999999999999999863
No 304
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=100.00 E-value=2.5e-40 Score=368.37 Aligned_cols=216 Identities=29% Similarity=0.464 Sum_probs=173.7
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCccEEEEC-----------------
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY--DIKYGEILID----------------- 420 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~I~i~----------------- 420 (604)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~g 79 (520)
T TIGR03269 1 IEVKNLTKKFDG-KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKVG 79 (520)
T ss_pred CEEEEEEEEECC-eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccccc
Confidence 478999999964 57999999999999999999999999999999999996 7999999997
Q ss_pred ------CEeCC-------CCC---HHHHhccceEEccc-CcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHH
Q psy13349 421 ------GQNIS-------NVS---QESLREQIGMVTQD-TSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIK 480 (604)
Q Consensus 421 ------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~ 480 (604)
|.++. ..+ ...+|+.++||+|+ +.+|+. |++||+.++.. ..+.++..+ .+.+.++
T Consensus 80 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~ 154 (520)
T TIGR03269 80 EPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVG-----RAVDLIE 154 (520)
T ss_pred cccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHH
Confidence 32221 111 13457789999998 577764 99999987421 122222111 1222233
Q ss_pred HhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEcc
Q psy13349 481 SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAH 558 (604)
Q Consensus 481 ~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH 558 (604)
.+ |++........+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. .++|+|+|||
T Consensus 155 ~~-------gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtH 227 (520)
T TIGR03269 155 MV-------QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSH 227 (520)
T ss_pred Hc-------CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeC
Confidence 22 55555556677999999999999999999999999999999999999999999998874 3789999999
Q ss_pred ChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 559 RLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 559 ~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 228 d~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 258 (520)
T TIGR03269 228 WPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258 (520)
T ss_pred CHHHHHHhcCEEEEEeCCEEeeecCHHHHHH
Confidence 9998865 89999999999999999988765
No 305
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=1.9e-39 Score=329.43 Aligned_cols=200 Identities=22% Similarity=0.322 Sum_probs=164.4
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCc-ccHH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLH-RSIR 451 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~ 451 (604)
.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +++++|++.+++ .|++
T Consensus 37 ~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~~g~-------------~~~~~~~~~~~~~~tv~ 103 (264)
T PRK13546 37 FFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGE-------------VSVIAISAGLSGQLTGI 103 (264)
T ss_pred eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCE-------------EeEEecccCCCCCCcHH
Confidence 35899999999999999999999999999999999999999999999994 456788877764 4999
Q ss_pred HHHhcCC--CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccC
Q psy13349 452 DNILYGR--PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529 (604)
Q Consensus 452 eNi~~g~--~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~t 529 (604)
||+.++. ...+.++..+.+ .+.+.. .|++..+......|||||+||++||||++.+|++|||||||
T Consensus 104 enl~~~~~~~~~~~~~~~~~~-----~~~l~~-------~~l~~~~~~~~~~LS~Gq~qrv~Laral~~~p~iLlLDEPt 171 (264)
T PRK13546 104 ENIEFKMLCMGFKRKEIKAMT-----PKIIEF-------SELGEFIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEAL 171 (264)
T ss_pred HHHHHHHHHcCCCHHHHHHHH-----HHHHHH-------cCCchhhcCCcccCCHHHHHHHHHHHHHhhCCCEEEEeCcc
Confidence 9998642 123333332221 111111 14555556667899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcCcHHHHHH
Q psy13349 530 SALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLW 597 (604)
Q Consensus 530 s~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~ 597 (604)
++||+.+.+.+.+.+.+.. .++|+|++||++..+.. ||+|++|++|++++.|+++++.+....|.+.+
T Consensus 172 ~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 241 (264)
T PRK13546 172 SVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPKYEAFLNDF 241 (264)
T ss_pred ccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEEEEeCCHHHHHHHhHHHHHHH
Confidence 9999999999999998765 47899999999998765 89999999999999999999988755555544
No 306
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=100.00 E-value=5.6e-40 Score=364.24 Aligned_cols=217 Identities=24% Similarity=0.372 Sum_probs=178.0
Q ss_pred eEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEECCEeCCCCCH-HHHhc
Q psy13349 359 KIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-IKYGEILIDGQNISNVSQ-ESLRE 434 (604)
Q Consensus 359 ~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~I~i~g~~~~~~~~-~~~r~ 434 (604)
.++++|+++.|+. ++++++|+||+|++||++||+||||||||||+++|+|+++ |++|+|.++|.++...+. +.+++
T Consensus 259 ~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~ 338 (506)
T PRK13549 259 ILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQ 338 (506)
T ss_pred eEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHC
Confidence 5899999999952 3569999999999999999999999999999999999998 599999999999865543 34577
Q ss_pred cceEEcccC---cCCc-ccHHHHHhcCCC-CC------CHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCC
Q psy13349 435 QIGMVTQDT---SLLH-RSIRDNILYGRP-DA------SECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKL 502 (604)
Q Consensus 435 ~i~~v~Q~~---~lf~-~ti~eNi~~g~~-~~------~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~L 502 (604)
.++|++|++ .+|+ .|+.||+.++.. .. +.++. ...+.++++.+ |+++ .......+|
T Consensus 339 ~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-------~l~~~~~~~~~~~L 406 (506)
T PRK13549 339 GIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAE-----LKTILESIQRL-------KVKTASPELAIARL 406 (506)
T ss_pred CCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHH-----HHHHHHHHHhc-------CccCCCcccccccC
Confidence 899999996 3664 599999987521 00 11111 11223334433 5542 345666799
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEe
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEE 580 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~ 580 (604)
|||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+++..
T Consensus 407 SgG~kqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~ 486 (506)
T PRK13549 407 SGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGD 486 (506)
T ss_pred CHHHHHHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998775 58999999999998765 999999999999999
Q ss_pred cChhHHh
Q psy13349 581 GSHLDLL 587 (604)
Q Consensus 581 g~~~~l~ 587 (604)
|+.+++.
T Consensus 487 ~~~~~~~ 493 (506)
T PRK13549 487 LINHNLT 493 (506)
T ss_pred eccccCC
Confidence 9888763
No 307
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=7.6e-38 Score=379.92 Aligned_cols=220 Identities=22% Similarity=0.374 Sum_probs=185.0
Q ss_pred ceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 358 GKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 358 ~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
..++++|++++|++ ++++++|+||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.++.. +....|+.|
T Consensus 1936 ~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~-~~~~~r~~I 2014 (2272)
T TIGR01257 1936 DILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNM 2014 (2272)
T ss_pred ceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcc-hHHHHhhhE
Confidence 46999999999975 3579999999999999999999999999999999999999999999999999865 455678899
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
||+||++.+++. |++||+.+... ..+.+++.+. .++.++.+ |++.........||||||||++||
T Consensus 2015 Gy~pQ~~~L~~~LTv~E~L~l~a~l~g~~~~~~~~~-----v~~lLe~l-------gL~~~~dk~~~~LSGGqKqRLslA 2082 (2272)
T TIGR01257 2015 GYCPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKV-----ANWSIQSL-------GLSLYADRLAGTYSGGNKRKLSTA 2082 (2272)
T ss_pred EEEeccccCCCCCCHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc-------CCHHHhcCChhhCCHHHHHHHHHH
Confidence 999999998865 99999976311 1222222211 11222222 454444555678999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
|||+.+|++++|||||++||+.+++.+++.|++.. +++|+|++||+++.++. ||||++|++|++++.|+.+++.++-
T Consensus 2083 ~ALi~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs~q~Lk~~~ 2161 (2272)
T TIGR01257 2083 IALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGTIQHLKSKF 2161 (2272)
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHHh
Confidence 99999999999999999999999999999998864 58999999999999876 9999999999999999999997653
No 308
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=100.00 E-value=2e-39 Score=349.03 Aligned_cols=215 Identities=22% Similarity=0.303 Sum_probs=173.2
Q ss_pred eEEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
.++++|++|.|+++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~------------ 88 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA------------ 88 (549)
T ss_pred eeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee------------
Confidence 58999999999764 4699999999999999999999999999999999999999999999999751
Q ss_pred eEEcccCcCCc-ccHHHHHhcCC--CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 437 GMVTQDTSLLH-RSIRDNILYGR--PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 437 ~~v~Q~~~lf~-~ti~eNi~~g~--~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
++.+.+.+++ .|++||+.++. +..+.++..+.+ .+.++.+ |++.........||||||||++||
T Consensus 89 -~i~~~~~l~~~lTV~EnL~l~~~~~~~~~~e~~e~i-----~elLe~l-------gL~~~ld~~~~~LSGGQrQRVaLA 155 (549)
T PRK13545 89 -LIAISSGLNGQLTGIENIELKGLMMGLTKEKIKEII-----PEIIEFA-------DIGKFIYQPVKTYSSGMKSRLGFA 155 (549)
T ss_pred -eEEeccccCCCCcHHHHHHhhhhhcCCCHHHHHHHH-----HHHHHHc-------CChhHhhCCcccCCHHHHHHHHHH
Confidence 1223344443 49999998742 223333322211 1111111 444444556678999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcCc
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKNG 591 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~ 591 (604)
|||+.+|++|||||||++||+.+...+.+.|.++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...-.
T Consensus 156 rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G~~~el~~~~~ 235 (549)
T PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYGDIKEVVDHYD 235 (549)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhhHH
Confidence 99999999999999999999999999999998865 47899999999998865 99999999999999999999987766
Q ss_pred HHHHHHH
Q psy13349 592 LYSRLWR 598 (604)
Q Consensus 592 ~y~~l~~ 598 (604)
.|.+.|.
T Consensus 236 ~~~~~~~ 242 (549)
T PRK13545 236 EFLKKYN 242 (549)
T ss_pred HHHHHHh
Confidence 6666554
No 309
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=100.00 E-value=4.8e-40 Score=326.72 Aligned_cols=197 Identities=28% Similarity=0.369 Sum_probs=156.1
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
+.++|++..|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 23 l~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~------------ 89 (224)
T cd03220 23 LGILGRKGEVGE-FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL------------ 89 (224)
T ss_pred hhhhhhhhhcCC-eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh------------
Confidence 678888888865 5799999999999999999999999999999999999999999999999875321
Q ss_pred cccCcC-CcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 440 TQDTSL-LHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 440 ~Q~~~l-f~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
.+...+ .+.|++||+.++.. ..+.++..+. ..+.++.+ |++.........||||||||++||||+
T Consensus 90 ~~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~l~~~~~~~~~~LSgG~~qrv~laral 157 (224)
T cd03220 90 GLGGGFNPELTGRENIYLNGRLLGLSRKEIDEK-----IDEIIEFS-------ELGDFIDLPVKTYSSGMKARLAFAIAT 157 (224)
T ss_pred cccccCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc-------CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 111222 24699999987532 1222222111 11122111 444444445568999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEec
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g 581 (604)
+++|+++||||||++||+.+++.+.+.+.+.. +++|+|++||+++.+. .||++++|++|++++.|
T Consensus 158 ~~~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 224 (224)
T cd03220 158 ALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224 (224)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999998765 4689999999999876 48999999999998865
No 310
>TIGR01257 rim_protein retinal-specific rim ABC transporter. This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease.
Probab=100.00 E-value=1.5e-39 Score=394.63 Aligned_cols=219 Identities=24% Similarity=0.409 Sum_probs=188.3
Q ss_pred ceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 358 GKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 358 ~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
..|+++|+++.|++ ++++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +...+|+.+
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~I 1005 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQSL 1005 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhcE
Confidence 36999999999963 5679999999999999999999999999999999999999999999999999864 456778899
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
||+||++.+|+. |++||+.++.. ..+.++..+ .+++.++.+ |++........+||||||||++||
T Consensus 1006 G~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v-------gL~~~~~~~~~~LSGGqKQRLsLA 1073 (2272)
T TIGR01257 1006 GMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT-------GLHHKRNEEAQDLSGGMQRKLSVA 1073 (2272)
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CCchhhcCChhhCCHHHHHHHHHH
Confidence 999999999965 99999987521 122222111 122333332 666666677789999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|||+.+|+++|||||||+||+.+++.+++.|++..+++|+|++||+++.++. ||||++|++|++++.|+.++|.++
T Consensus 1074 rALi~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1074 IAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 9999999999999999999999999999999988778999999999999875 999999999999999999999765
No 311
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=5e-40 Score=365.12 Aligned_cols=212 Identities=24% Similarity=0.381 Sum_probs=173.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i~ 437 (604)
.++++|+++.|. .+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++.++
T Consensus 265 ~l~~~~l~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i~ 341 (510)
T PRK09700 265 VFEVRNVTSRDR---KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGMA 341 (510)
T ss_pred EEEEeCccccCC---CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCcE
Confidence 599999998763 38999999999999999999999999999999999999999999999999865543 45677899
Q ss_pred EEcccC---cCCcc-cHHHHHhcCCCC-----------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCC
Q psy13349 438 MVTQDT---SLLHR-SIRDNILYGRPD-----------ASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIK 501 (604)
Q Consensus 438 ~v~Q~~---~lf~~-ti~eNi~~g~~~-----------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~ 501 (604)
||||++ .+|+. |++||+.++... .+..+ ....+.+.++.+ |+. .........
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~-------~l~~~~~~~~~~~ 409 (510)
T PRK09700 342 YITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVD-----EQRTAENQRELL-------ALKCHSVNQNITE 409 (510)
T ss_pred EccCccccCCCcCCCcHHHHhccccccccccccccccccChHH-----HHHHHHHHHHhc-------CCCCCCccCcccc
Confidence 999984 57755 999999876320 01111 011123333332 553 344556678
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeE
Q psy13349 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAE 579 (604)
Q Consensus 502 LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~ 579 (604)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++
T Consensus 410 LSgGq~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~ 489 (510)
T PRK09700 410 LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQ 489 (510)
T ss_pred CChHHHHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998764 57899999999997754 99999999999999
Q ss_pred ecChhH
Q psy13349 580 EGSHLD 585 (604)
Q Consensus 580 ~g~~~~ 585 (604)
.++..+
T Consensus 490 ~~~~~~ 495 (510)
T PRK09700 490 ILTNRD 495 (510)
T ss_pred EecCcc
Confidence 887634
No 312
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=100.00 E-value=2.4e-39 Score=337.96 Aligned_cols=215 Identities=30% Similarity=0.473 Sum_probs=181.7
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccc
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQI 436 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i 436 (604)
..++++++++.|| +..+++||||++++||+.||.|+||+|||||+++|.|+|.|++|+|++||++++--++ +..|..|
T Consensus 3 ~~l~~~~itK~f~-~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~GI 81 (501)
T COG3845 3 PALEMRGITKRFP-GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLGI 81 (501)
T ss_pred ceEEEeccEEEcC-CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcCC
Confidence 3589999999998 4569999999999999999999999999999999999999999999999999986665 5578889
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCCCCCH--HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRPDASE--CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~~--~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|+|.|++.|++. |+.|||.+|.+.... -....+ ..-+.++.+ +.|++-...+....||-|||||+.|-
T Consensus 82 GMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~------~~~i~~l~~---~yGl~vdp~~~V~dLsVG~qQRVEIl 152 (501)
T COG3845 82 GMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQA------RARIKELSE---RYGLPVDPDAKVADLSVGEQQRVEIL 152 (501)
T ss_pred cEEeeccccccccchhhhhhhcCccccccccCHHHH------HHHHHHHHH---HhCCCCCccceeecCCcchhHHHHHH
Confidence 999999999977 999999999753210 011111 111222222 22666666677788999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecC
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 582 (604)
+||+++|++||||||||-|-|...+++++.++++. .|+|||+|||++..+.. |||+-||.+|+++..-+
T Consensus 153 KaLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~ 223 (501)
T COG3845 153 KALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD 223 (501)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec
Confidence 99999999999999999999999999999999886 59999999999998766 99999999999875443
No 313
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=100.00 E-value=1.3e-39 Score=316.70 Aligned_cols=188 Identities=23% Similarity=0.326 Sum_probs=156.0
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +.++ ++||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+ ++.++|+
T Consensus 2 l~~~~l~~~~~~-~~l~-~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~----~~~~~~~ 75 (195)
T PRK13541 2 LSLHQLQFNIEQ-KNLF-DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA----KPYCTYI 75 (195)
T ss_pred eEEEEeeEEECC-cEEE-EEEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh----hhhEEec
Confidence 689999999964 4455 599999999999999999999999999999999999999999999886532 3469999
Q ss_pred cccCcC-CcccHHHHHhcCCCCC-CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 440 TQDTSL-LHRSIRDNILYGRPDA-SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 440 ~Q~~~l-f~~ti~eNi~~g~~~~-~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
+|++.+ |+.|++||+.++.+.. .++++.++++.. |++....+.+.+||||||||++||||++
T Consensus 76 ~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 76 GHNLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYF----------------KLHDLLDEKCYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred cCCcCCCccCCHHHHHHHHHHhcccHHHHHHHHHHc----------------CCHhhhccChhhCCHHHHHHHHHHHHHh
Confidence 998765 5779999998754322 233333333333 3333344556789999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHH-hCCcEEEEEccChhHHhhcCeE
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNL-MKGKTVIAIAHRLSTISAMDRL 569 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~-~~~~t~i~itH~l~~~~~~d~i 569 (604)
++|+++||||||++||+.+.+.+.+.+++. .+++|+|++||+++.++.+|-+
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~ 192 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKSAQIL 192 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccchhhee
Confidence 999999999999999999999999999754 3579999999999999998865
No 314
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=3.8e-40 Score=300.57 Aligned_cols=218 Identities=28% Similarity=0.460 Sum_probs=182.8
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC----------C
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN----------V 427 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~----------~ 427 (604)
..++++|+.++|+. ..+|++|||+-++|+.+.|+|.|||||||+++|+.-+..|+.|+|.++|.+++- .
T Consensus 5 ~~l~v~dlHK~~G~-~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~a 83 (256)
T COG4598 5 NALEVEDLHKRYGE-HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKPA 83 (256)
T ss_pred cceehhHHHhhccc-chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeeeC
Confidence 36899999999975 459999999999999999999999999999999999999999999999988732 1
Q ss_pred C---HHHHhccceEEcccCcCCcc-cHHHHHhcCCC---CCCHHH-HHHHHHHchHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 428 S---QESLREQIGMVTQDTSLLHR-SIRDNILYGRP---DASECE-LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 428 ~---~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~-i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
+ .+.+|.+.++|+|+..|.+- |+.||+.-+.- ..+..+ +..| ..++.+ .|+...-..-.
T Consensus 84 d~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A------e~~L~k-------VGi~ek~~~YP 150 (256)
T COG4598 84 DKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA------EKYLAK-------VGIAEKADAYP 150 (256)
T ss_pred CHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH------HHHHHH-------hCchhhhhcCc
Confidence 2 24578899999999999855 99999864311 122222 2221 122222 26555555567
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
..|||||+||.||||||.-+|+++++|||||+|||+-.-++++.++++. +++|.++|||.+...+. +.+|+.+++|.|
T Consensus 151 ~~LSGGQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i 230 (256)
T COG4598 151 AHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI 230 (256)
T ss_pred cccCchHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee
Confidence 7999999999999999999999999999999999999999999998887 59999999999999998 699999999999
Q ss_pred eEecChhHHhhc
Q psy13349 578 AEEGSHLDLLKK 589 (604)
Q Consensus 578 v~~g~~~~l~~~ 589 (604)
-|+|+|+++..+
T Consensus 231 EE~G~P~qvf~n 242 (256)
T COG4598 231 EEEGPPEQVFGN 242 (256)
T ss_pred cccCChHHHhcC
Confidence 999999999864
No 315
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=6.4e-39 Score=324.95 Aligned_cols=221 Identities=34% Similarity=0.520 Sum_probs=182.9
Q ss_pred ceEEEEEEEEEeCCC----------CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC
Q psy13349 358 GKIFFKNVSFSYDQK----------HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV 427 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~----------~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~ 427 (604)
.-++.+||...|+-+ ..++++|||++++||++||||+||||||||-..|+|+.+++ |+|.++|+++...
T Consensus 275 ~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~~ 353 (534)
T COG4172 275 VLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDGL 353 (534)
T ss_pred ceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccccc
Confidence 358999999999632 25899999999999999999999999999999999999876 9999999999988
Q ss_pred CHHH---HhccceEEcccCc--CCcc-cHHHHHhcC----CCCCCH----HHHHHHHHHchHHHHHHHhhhhhhcCCCcc
Q psy13349 428 SQES---LREQIGMVTQDTS--LLHR-SIRDNILYG----RPDASE----CELFNAAKCAEADIFIKSLTDEHGRKGYDA 493 (604)
Q Consensus 428 ~~~~---~r~~i~~v~Q~~~--lf~~-ti~eNi~~g----~~~~~~----~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t 493 (604)
+.++ +|+.+-.|+|||+ |-+- ||.+-|.-| .|..+. +++.+|++.+|+ |.
T Consensus 354 ~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGL----------------Dp 417 (534)
T COG4172 354 SRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGL----------------DP 417 (534)
T ss_pred ChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCC----------------Ch
Confidence 8655 6789999999997 3222 766655544 454443 334445555544 43
Q ss_pred cc-ccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeE
Q psy13349 494 HV-GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRL 569 (604)
Q Consensus 494 ~v-~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i 569 (604)
.. ..-...+|||||||||||||++-+|++++||||||+||..-+.+|.+.++++. .+-+-++|||+|..++. ||+|
T Consensus 418 ~~r~RYPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~v 497 (534)
T COG4172 418 ATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRV 497 (534)
T ss_pred hHhhcCCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceE
Confidence 22 23456899999999999999999999999999999999999999999998765 47899999999999987 9999
Q ss_pred EEEeCCEEeEecChhHHhhc-CcHHHH
Q psy13349 570 IVLDNGCVAEEGSHLDLLKK-NGLYSR 595 (604)
Q Consensus 570 ~vl~~G~iv~~g~~~~l~~~-~~~y~~ 595 (604)
+||++|+|||+|+.+++.++ ...|.+
T Consensus 498 iVm~~GkiVE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 498 IVMRDGKIVEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred EEEeCCEEeeeCCHHHHhcCCCcHHHH
Confidence 99999999999999999876 445654
No 316
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=100.00 E-value=1.9e-39 Score=359.80 Aligned_cols=220 Identities=23% Similarity=0.337 Sum_probs=174.1
Q ss_pred eEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEECCEeCCCCCH-HHHhc
Q psy13349 359 KIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-KYGEILIDGQNISNVSQ-ESLRE 434 (604)
Q Consensus 359 ~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~~~~~~~~-~~~r~ 434 (604)
.++++|+++.|++ +.++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+. ..+|+
T Consensus 257 ~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~ 336 (500)
T TIGR02633 257 ILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRA 336 (500)
T ss_pred eEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 5999999999942 34699999999999999999999999999999999999985 89999999999865443 45678
Q ss_pred cceEEcccC---cCCc-ccHHHHHhcCCCC-CCH-HHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHH
Q psy13349 435 QIGMVTQDT---SLLH-RSIRDNILYGRPD-ASE-CELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQR 507 (604)
Q Consensus 435 ~i~~v~Q~~---~lf~-~ti~eNi~~g~~~-~~~-~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~ 507 (604)
+++||+|++ .+|+ .|++||+.++... ... ..+........+.++++.+ |+.. ........||||||
T Consensus 337 ~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~l~~~~~~~~~~~LSgGqk 409 (500)
T TIGR02633 337 GIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL-------KVKTASPFLPIGRLSGGNQ 409 (500)
T ss_pred CCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc-------CccCCCccCccccCCHHHH
Confidence 999999996 4665 4999999875311 000 0000000111123333332 4432 23455668999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhH
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 585 (604)
||++|||||+.+|++|||||||++||+.+.+.+++.++++. ++.|+|+|||+++.+.. ||++++|++|+++..++.++
T Consensus 410 qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~ 489 (500)
T TIGR02633 410 QKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHA 489 (500)
T ss_pred HHHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998865 57899999999998865 89999999999998776544
No 317
>TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein.
Probab=100.00 E-value=7.7e-40 Score=370.15 Aligned_cols=205 Identities=31% Similarity=0.477 Sum_probs=174.0
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK---YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR 448 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 448 (604)
++++|+|+|+++++||.+||+||||||||||+++|+|..+|. +|+|.+||.++. ...+|+.++||+|++.+++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~---~~~~~~~i~yv~Q~~~~~~~ 113 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPID---AKEMRAISAYVQQDDLFIPT 113 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC---HHHHhhhceeeccccccCcc
Confidence 357999999999999999999999999999999999999885 799999999875 45688899999999999965
Q ss_pred -cHHHHHhcCCC-----CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccC--CCCCChhHHHHHHHHHHHccCC
Q psy13349 449 -SIRDNILYGRP-----DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEH--GIKLSGGQRQRIAIARVILKNA 520 (604)
Q Consensus 449 -ti~eNi~~g~~-----~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~--g~~LSgGq~QrialARall~~p 520 (604)
|++|||.++.. +.+.++ +....++.++.+.- ....||.+|+. +..||||||||++|||||+.+|
T Consensus 114 lTV~e~l~f~~~~~~~~~~~~~~-----~~~~v~~~l~~lgL---~~~~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p 185 (617)
T TIGR00955 114 LTVREHLMFQAHLRMPRRVTKKE-----KRERVDEVLQALGL---RKCANTRIGVPGRVKGLSGGERKRLAFASELLTDP 185 (617)
T ss_pred CcHHHHHHHHHhcCCCCCCCHHH-----HHHHHHHHHHHcCc---hhcCcCccCCCCCCCCcCcchhhHHHHHHHHHcCC
Confidence 99999987632 122222 12234455554321 11679999984 4789999999999999999999
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChh--HHhhcCeEEEEeCCEEeEecChhHHh
Q psy13349 521 PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLS--TISAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 521 ~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~--~~~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
++++||||||+||+.+...+.+.+++.. +++|+|+++|+++ ..+.+|++++|++|++++.|+++++.
T Consensus 186 ~vlllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~~~~~~ 255 (617)
T TIGR00955 186 PLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAV 255 (617)
T ss_pred CEEEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECCHHHHH
Confidence 9999999999999999999999999876 4899999999985 46789999999999999999999885
No 318
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=4.6e-39 Score=360.24 Aligned_cols=216 Identities=28% Similarity=0.366 Sum_probs=172.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +..|+|
T Consensus 4 ~i~~~nls~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i~~ 72 (552)
T TIGR03719 4 IYTMNRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKVGY 72 (552)
T ss_pred EEEEeeEEEecCCCCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 489999999997345799999999999999999999999999999999999999999999975 247999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCC-----------------CCH---------HHHHHHHHHchHHHHHHHhhhhhhcCCC
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPD-----------------ASE---------CELFNAAKCAEADIFIKSLTDEHGRKGY 491 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~-----------------~~~---------~~i~~a~~~~~~~~~i~~lp~~~~~~g~ 491 (604)
|+|++.+++. |++||+.++... ..+ +++.++++.++.++.-..+.+.....|+
T Consensus 73 v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 152 (552)
T TIGR03719 73 LPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRC 152 (552)
T ss_pred EeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhCCC
Confidence 9999998865 999999875210 001 1233334344432211111111122355
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEE
Q psy13349 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLI 570 (604)
Q Consensus 492 ~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~ 570 (604)
+. ......+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. ||+|+
T Consensus 153 ~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~d~v~ 229 (552)
T TIGR03719 153 PP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVAGWIL 229 (552)
T ss_pred Cc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcCeEE
Confidence 32 34566799999999999999999999999999999999999999999999876 3699999999998876 89999
Q ss_pred EEeCCEEe-EecChhHHhh
Q psy13349 571 VLDNGCVA-EEGSHLDLLK 588 (604)
Q Consensus 571 vl~~G~iv-~~g~~~~l~~ 588 (604)
+|++|+++ ..|++++..+
T Consensus 230 ~l~~g~i~~~~g~~~~~~~ 248 (552)
T TIGR03719 230 ELDRGRGIPWEGNYSSWLE 248 (552)
T ss_pred EEECCEEEEecCCHHHHHH
Confidence 99999976 7799987654
No 319
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=3.9e-39 Score=360.90 Aligned_cols=216 Identities=28% Similarity=0.359 Sum_probs=170.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.|+++|++++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +..++|
T Consensus 6 ~l~i~~l~~~y~~~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i~~ 74 (556)
T PRK11819 6 IYTMNRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKVGY 74 (556)
T ss_pred EEEEeeEEEEeCCCCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEEEE
Confidence 589999999997346799999999999999999999999999999999999999999999975 146999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCCC----------------CH----------HHHHHHHHHchHHHHHHHhhhhhhcCCC
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPDA----------------SE----------CELFNAAKCAEADIFIKSLTDEHGRKGY 491 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~~----------------~~----------~~i~~a~~~~~~~~~i~~lp~~~~~~g~ 491 (604)
|+|+|.+++. |++||+.++.... .+ .++.+.+..++.++............|+
T Consensus 75 v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl 154 (556)
T PRK11819 75 LPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRC 154 (556)
T ss_pred EecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhCCC
Confidence 9999999866 9999998752100 00 0111111111111111111111222355
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEE
Q psy13349 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLI 570 (604)
Q Consensus 492 ~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~ 570 (604)
+ .......+||||||||++|||||+.+|++||||||||+||+.+...+.+.|++.. .|+|+|||+++.+.. ||+|+
T Consensus 155 ~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~d~i~ 231 (556)
T PRK11819 155 P-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVAGWIL 231 (556)
T ss_pred C-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcCeEE
Confidence 3 2455667899999999999999999999999999999999999999999998763 599999999998876 89999
Q ss_pred EEeCCEEe-EecChhHHhh
Q psy13349 571 VLDNGCVA-EEGSHLDLLK 588 (604)
Q Consensus 571 vl~~G~iv-~~g~~~~l~~ 588 (604)
+|++|+++ ..|+++++.+
T Consensus 232 ~l~~g~i~~~~g~~~~~~~ 250 (556)
T PRK11819 232 ELDRGRGIPWEGNYSSWLE 250 (556)
T ss_pred EEeCCEEEEecCCHHHHHH
Confidence 99999986 7899887654
No 320
>COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.2e-39 Score=316.52 Aligned_cols=197 Identities=26% Similarity=0.418 Sum_probs=170.2
Q ss_pred ecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC----CCHHHHhccceEEcccCcCCcc-cHHH
Q psy13349 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN----VSQESLREQIGMVTQDTSLLHR-SIRD 452 (604)
Q Consensus 378 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~----~~~~~~r~~i~~v~Q~~~lf~~-ti~e 452 (604)
+++|+.+...++||-|+||||||||+|+++|+..|++|.|.+||.-+.+ +...--+++||||+||..||+- |++-
T Consensus 16 ~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDARLFpH~tVrg 95 (352)
T COG4148 16 DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRG 95 (352)
T ss_pred EEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeeccccccceEEec
Confidence 5889988889999999999999999999999999999999999986643 4445557789999999999966 9999
Q ss_pred HHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCC
Q psy13349 453 NILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532 (604)
Q Consensus 453 Ni~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~L 532 (604)
|++||....+.++...++... |+...+.....+||||||||+||+|||+.+|++|+||||.|+|
T Consensus 96 NL~YG~~~~~~~~fd~iv~lL----------------GI~hLL~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSL 159 (352)
T COG4148 96 NLRYGMWKSMRAQFDQLVALL----------------GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASL 159 (352)
T ss_pred chhhhhcccchHhHHHHHHHh----------------CcHHHHhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhc
Confidence 999998655444444444333 5566666666799999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 533 DSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 533 D~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
|....++++-.++++.+ +-.|++|||.+..+.+ ||+|++|++|++...|.-+|.+++.
T Consensus 160 D~~RK~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~~e~v~~~~ 220 (352)
T COG4148 160 DLPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220 (352)
T ss_pred ccchhhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCcHHHHhcCc
Confidence 99999999999988764 6789999999987655 9999999999999999999987654
No 321
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=100.00 E-value=4.3e-39 Score=356.79 Aligned_cols=211 Identities=23% Similarity=0.385 Sum_probs=174.2
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i~ 437 (604)
.++++|+++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. +.+|++++
T Consensus 257 ~l~~~~l~~------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~ 330 (501)
T PRK10762 257 RLKVDNLSG------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIV 330 (501)
T ss_pred EEEEeCccc------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCE
Confidence 589999984 37999999999999999999999999999999999999999999999999877654 34677899
Q ss_pred EEcccC---cCCc-ccHHHHHhcCCCC--------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCCh
Q psy13349 438 MVTQDT---SLLH-RSIRDNILYGRPD--------ASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSG 504 (604)
Q Consensus 438 ~v~Q~~---~lf~-~ti~eNi~~g~~~--------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSg 504 (604)
||||++ .+|. .|++||+.++... .+.++. ...+.++++.+ |+. .........|||
T Consensus 331 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-------~l~~~~~~~~~~~LSg 398 (501)
T PRK10762 331 YISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADE-----QQAVSDFIRLF-------NIKTPSMEQAIGLLSG 398 (501)
T ss_pred EecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHH-----HHHHHHHHHhc-------CCCCCCccCchhhCCH
Confidence 999997 3554 5999999875210 111111 11123333332 553 345666779999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecC
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 582 (604)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++..|+
T Consensus 399 Gekqrv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 399 GNQQKVAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999999999999998875 57899999999998765 89999999999999998
Q ss_pred hhHHh
Q psy13349 583 HLDLL 587 (604)
Q Consensus 583 ~~~l~ 587 (604)
.+++.
T Consensus 479 ~~~~~ 483 (501)
T PRK10762 479 REQAT 483 (501)
T ss_pred cccCC
Confidence 77653
No 322
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.5e-39 Score=301.15 Aligned_cols=214 Identities=31% Similarity=0.506 Sum_probs=186.1
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
|+++||+++|++ +.+++|+|++|++|.+++++||||||||||+.+++|+.++++|+|.++|.++.+.+.+++.+.++.+
T Consensus 2 I~i~nv~K~y~~-~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk~lSIL 80 (252)
T COG4604 2 ITIENVSKSYGT-KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAKKLSIL 80 (252)
T ss_pred eeehhhhHhhCC-EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHHHHHHH
Confidence 689999999975 5799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCcCCcc-cHHHHHhcCC-C------CCCHH-HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGR-P------DASEC-ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~-~------~~~~~-~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
-|+.++-.- ||||=+.||+ | ...|+ .+.+|++..++.+ .-++--.+||||||||-
T Consensus 81 kQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~----------------l~dryLd~LSGGQrQRA 144 (252)
T COG4604 81 KQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLED----------------LSDRYLDELSGGQRQRA 144 (252)
T ss_pred HhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccc----------------hHHHhHHhcccchhhhh
Confidence 999988644 9999999996 2 11222 2333444333322 11222347999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
-+|-.+.+|.+.++||||.++||-+....+++.++++.. +||+++|-|+.+.++. +|+|+-|++|+++.+|+++|++
T Consensus 145 fIAMVlaQdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~~~eii 224 (252)
T COG4604 145 FIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEII 224 (252)
T ss_pred hhheeeeccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCCHHHhc
Confidence 999999999999999999999999999999999988763 8999999999999988 6999999999999999999998
Q ss_pred hcC
Q psy13349 588 KKN 590 (604)
Q Consensus 588 ~~~ 590 (604)
+.+
T Consensus 225 ~~~ 227 (252)
T COG4604 225 QPE 227 (252)
T ss_pred CHH
Confidence 754
No 323
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-38 Score=355.33 Aligned_cols=208 Identities=24% Similarity=0.366 Sum_probs=167.4
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. ..++|+
T Consensus 2 l~i~~ls~~~~~-~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~~~ 69 (530)
T PRK15064 2 LSTANITMQFGA-KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLGKL 69 (530)
T ss_pred EEEEEEEEEeCC-cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEEEE
Confidence 789999999974 57999999999999999999999999999999999999999999999872 369999
Q ss_pred cccCcCCcc-cHHHHHhcCCCC----------------CCHHHHHHHH-------------HHchHHHHHHHhhhhhhcC
Q psy13349 440 TQDTSLLHR-SIRDNILYGRPD----------------ASECELFNAA-------------KCAEADIFIKSLTDEHGRK 489 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~~----------------~~~~~i~~a~-------------~~~~~~~~i~~lp~~~~~~ 489 (604)
+|++.+|.. |++||+.++... .+.+...... ....+.+.++ ..
T Consensus 70 ~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-------~~ 142 (530)
T PRK15064 70 RQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLL-------GV 142 (530)
T ss_pred eccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHH-------hC
Confidence 999988865 999999875310 0000000000 0011112222 22
Q ss_pred CCcccc-ccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cC
Q psy13349 490 GYDAHV-GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MD 567 (604)
Q Consensus 490 g~~t~v-~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d 567 (604)
|++... .....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+ .++|+|+|||+++.+.. ||
T Consensus 143 gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d 220 (530)
T PRK15064 143 GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCT 220 (530)
T ss_pred CCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcc
Confidence 665433 234678999999999999999999999999999999999999999999975 37899999999998765 89
Q ss_pred eEEEEeCCEE-eEecChhHHhh
Q psy13349 568 RLIVLDNGCV-AEEGSHLDLLK 588 (604)
Q Consensus 568 ~i~vl~~G~i-v~~g~~~~l~~ 588 (604)
+|++|++|++ +..|++++.++
T Consensus 221 ~i~~l~~g~i~~~~g~~~~~~~ 242 (530)
T PRK15064 221 HMADLDYGELRVYPGNYDEYMT 242 (530)
T ss_pred eEEEEeCCEEEEecCCHHHHHH
Confidence 9999999999 47899988764
No 324
>COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=6.2e-39 Score=296.52 Aligned_cols=206 Identities=33% Similarity=0.480 Sum_probs=168.1
Q ss_pred EEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 360 IFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
+..++++.+|++. .++|+|+|++|.+||.+.++||||||||||+|+++||.+|..|+|.+||.++..-.. .=|.
T Consensus 4 l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPga-----ergv 78 (259)
T COG4525 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPGA-----ERGV 78 (259)
T ss_pred eehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCCc-----ccee
Confidence 5678899999763 359999999999999999999999999999999999999999999999998875432 3589
Q ss_pred EcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|+|++-|++- |+.||+.||-. ..+. +.+..-++.+... + |+...=......||||||||+.||||
T Consensus 79 VFQ~~~LlPWl~~~dNvafgL~l~Gi~k-----~~R~~~a~q~l~~----V---gL~~~~~~~i~qLSGGmrQRvGiARA 146 (259)
T COG4525 79 VFQNEALLPWLNVIDNVAFGLQLRGIEK-----AQRREIAHQMLAL----V---GLEGAEHKYIWQLSGGMRQRVGIARA 146 (259)
T ss_pred EeccCccchhhHHHHHHHHHHHhcCCCH-----HHHHHHHHHHHHH----h---CcccccccceEeecchHHHHHHHHHH
Confidence 9999999988 99999999853 2222 2222222222221 1 33332234556899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEe--CCEEeEecC
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLD--NGCVAEEGS 582 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~--~G~iv~~g~ 582 (604)
|.-+|+.|+||||+++||.-|.+++++.+-+.+ .++-+++|||+.+..-. +++++||+ .|+|++.=+
T Consensus 147 La~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~~~ 218 (259)
T COG4525 147 LAVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVERLP 218 (259)
T ss_pred hhcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEecC
Confidence 999999999999999999999999999987776 48999999999987655 89999997 589997543
No 325
>COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism]
Probab=100.00 E-value=2.9e-39 Score=289.89 Aligned_cols=214 Identities=28% Similarity=0.440 Sum_probs=176.8
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC--CCCC----HHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI--SNVS----QESL 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~--~~~~----~~~~ 432 (604)
.|+++|++|.|+. .++|.||+|+-+.||.+.+.||||+|||||++.|.=+..|.+|+..|.|... ++.+ ..++
T Consensus 2 sirv~~in~~yg~-~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~l 80 (242)
T COG4161 2 SIQLNGINCFYGA-HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRDL 80 (242)
T ss_pred ceEEccccccccc-chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHHH
Confidence 4899999999976 4699999999999999999999999999999999999999999999987543 3322 3578
Q ss_pred hccceEEcccCcCCcc-cHHHHHhcCCC---CCCHHH-HH---HHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 433 REQIGMVTQDTSLLHR-SIRDNILYGRP---DASECE-LF---NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~---~~~~~~-i~---~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
|+.+|+|+|.-+|.+- |+-||+.-..- ..++++ .. +.+++..+.++.++ -.-.|||
T Consensus 81 r~~vgmvfqqy~lwphltv~enlieap~kv~gl~~~qa~~~a~ellkrlrl~~~adr----------------~plhlsg 144 (242)
T COG4161 81 RRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYADR----------------YPLHLSG 144 (242)
T ss_pred HHhhhhhhhhhccCchhHHHHHHHhhhHHHhCCCHHHHHHHHHHHHHHhcccccccc----------------Cceeccc
Confidence 9999999999999966 99999864311 122222 22 22233333333333 3457999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecC
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 582 (604)
||+||+||||||+.+|++|++||||++|||+-..++.+.|+++. .|.|-++|||..+..+. +.+|+.|++|+|||+|+
T Consensus 145 gqqqrvaiaralmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 145 GQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred chhhhHHHHHHHhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecc
Confidence 99999999999999999999999999999999999999999987 48999999999999877 89999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
+.-.-+.
T Consensus 225 a~~ft~p 231 (242)
T COG4161 225 ASCFTEP 231 (242)
T ss_pred hhhccCc
Confidence 8766543
No 326
>PRK15064 ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.7e-38 Score=354.34 Aligned_cols=204 Identities=21% Similarity=0.359 Sum_probs=170.4
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +.++
T Consensus 318 ~~l~~~~l~~~~~~-~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~-----------~~i~ 385 (530)
T PRK15064 318 NALEVENLTKGFDN-GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN-----------ANIG 385 (530)
T ss_pred ceEEEEeeEEeeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-----------eEEE
Confidence 36999999999975 46999999999999999999999999999999999999999999999873 4799
Q ss_pred EEcccCc--CCc-ccHHHHHhcCC-CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhHHHHHHH
Q psy13349 438 MVTQDTS--LLH-RSIRDNILYGR-PDASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 438 ~v~Q~~~--lf~-~ti~eNi~~g~-~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq~Qrial 512 (604)
|++|++. +++ .|++||+.+.. +...++++.+.++.. |+. ........+||||||||++|
T Consensus 386 ~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~~LSgGq~qrv~l 449 (530)
T PRK15064 386 YYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL----------------LFSQDDIKKSVKVLSGGEKGRMLF 449 (530)
T ss_pred EEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc----------------CCChhHhcCcccccCHHHHHHHHH
Confidence 9999974 443 59999986532 112233333333333 332 23345567999999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEe-EecChhHHhhcC
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVA-EEGSHLDLLKKN 590 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l~~~~ 590 (604)
|||++.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||+|++|++|+++ ..|+++++++.+
T Consensus 450 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g~~~~~~~~~ 527 (530)
T PRK15064 450 GKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSGTYEEYLRSQ 527 (530)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCCCHHHHHHHh
Confidence 99999999999999999999999999999999876 4599999999998875 8999999999998 789998887665
Q ss_pred c
Q psy13349 591 G 591 (604)
Q Consensus 591 ~ 591 (604)
|
T Consensus 528 ~ 528 (530)
T PRK15064 528 G 528 (530)
T ss_pred C
Confidence 4
No 327
>PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.3e-38 Score=350.92 Aligned_cols=212 Identities=26% Similarity=0.419 Sum_probs=173.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i~ 437 (604)
.++++|+++. .+++|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+. ...++.++
T Consensus 257 ~l~~~~~~~~-----~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 331 (501)
T PRK11288 257 RLRLDGLKGP-----GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIM 331 (501)
T ss_pred EEEEeccccC-----CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCE
Confidence 5889999842 48999999999999999999999999999999999999999999999999865443 45578899
Q ss_pred EEcccCc---CCc-ccHHHHHhcCCCCC--------CHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCCh
Q psy13349 438 MVTQDTS---LLH-RSIRDNILYGRPDA--------SECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSG 504 (604)
Q Consensus 438 ~v~Q~~~---lf~-~ti~eNi~~g~~~~--------~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSg 504 (604)
|+||++. +|+ .|+.||+.++.... +..+. ...+.+++..+ |++ ........+|||
T Consensus 332 ~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-------~l~~~~~~~~~~~LSg 399 (501)
T PRK11288 332 LCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWE-----AENADRFIRSL-------NIKTPSREQLIMNLSG 399 (501)
T ss_pred EcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHH-----HHHHHHHHHhc-------CcccCCccCccccCCH
Confidence 9999973 664 69999998753210 11110 11123333332 553 334555679999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecC
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 582 (604)
|||||++||||++.+|++|||||||++||+.+.+.+++.|+++. .+.|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 400 Gq~qrl~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 400 GNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998875 47899999999998855 89999999999999998
Q ss_pred hhHHh
Q psy13349 583 HLDLL 587 (604)
Q Consensus 583 ~~~l~ 587 (604)
.+|..
T Consensus 480 ~~~~~ 484 (501)
T PRK11288 480 REQAT 484 (501)
T ss_pred cccCC
Confidence 87654
No 328
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.5e-38 Score=319.72 Aligned_cols=193 Identities=26% Similarity=0.349 Sum_probs=156.2
Q ss_pred EEeCCCCceeeecceEEe-----CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcc
Q psy13349 367 FSYDQKHLIINNLSLTIQ-----PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQ 441 (604)
Q Consensus 367 f~y~~~~~~l~~isl~i~-----~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q 441 (604)
|+|++..+.++|++|+++ +||+++|+||||||||||+++|+|+++|++|+|.++|. .++|++|
T Consensus 1 ~~y~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~------------~i~~~~q 68 (246)
T cd03237 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD------------TVSYKPQ 68 (246)
T ss_pred CCCcccccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc------------eEEEecc
Confidence 567765568888888886 69999999999999999999999999999999999984 6999999
Q ss_pred cCcC-CcccHHHHHhcCCCCCC--HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 442 DTSL-LHRSIRDNILYGRPDAS--ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 442 ~~~l-f~~ti~eNi~~g~~~~~--~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
++.. ++.|++||+.+...... .+... +.++.+ |++.........||||||||++|||||++
T Consensus 69 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~---------~~l~~l-------~l~~~~~~~~~~LSgGe~qrv~iaraL~~ 132 (246)
T cd03237 69 YIKADYEGTVRDLLSSITKDFYTHPYFKT---------EIAKPL-------QIEQILDREVPELSGGELQRVAIAACLSK 132 (246)
T ss_pred cccCCCCCCHHHHHHHHhhhccccHHHHH---------HHHHHc-------CCHHHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 9874 57899999976432111 11111 222221 55555556667899999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEe--EecChhHHh
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVA--EEGSHLDLL 587 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv--~~g~~~~l~ 587 (604)
+|+++||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+++..+ ..++++++.
T Consensus 133 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~ 206 (246)
T cd03237 133 DADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEPSVNGVANPPQSLR 206 (246)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCCeeEEEeCCchHHH
Confidence 999999999999999999999999998875 37999999999998875 9999999765443 456666654
No 329
>cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=1.2e-38 Score=321.82 Aligned_cols=201 Identities=22% Similarity=0.328 Sum_probs=160.1
Q ss_pred EEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE-----------ECCEeCCCCCHHH
Q psy13349 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL-----------IDGQNISNVSQES 431 (604)
Q Consensus 363 ~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~-----------i~g~~~~~~~~~~ 431 (604)
.||+++|+++.++|+|+| .+++||+++|+||||||||||+++|+|+++|++|+|. ++|.++.+...+.
T Consensus 4 ~~~~~~y~~~~~~l~~i~-~i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (255)
T cd03236 4 DEPVHRYGPNSFKLHRLP-VPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTKL 82 (255)
T ss_pred cCcceeecCcchhhhcCC-CCCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHHh
Confidence 468899976556999999 4999999999999999999999999999999999996 7888886654333
Q ss_pred Hhc--cceEEcccCcCCcccHHHHHhcCCCCCC-HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 432 LRE--QIGMVTQDTSLLHRSIRDNILYGRPDAS-ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 432 ~r~--~i~~v~Q~~~lf~~ti~eNi~~g~~~~~-~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
.+. .+++++|++.+++.++.+|+...-.... +++ ..++++.+ |++........+|||||||
T Consensus 83 ~~~~~~i~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~---------~~~~l~~~-------gl~~~~~~~~~~LS~G~~q 146 (255)
T cd03236 83 LEGDVKVIVKPQYVDLIPKAVKGKVGELLKKKDERGK---------LDELVDQL-------ELRHVLDRNIDQLSGGELQ 146 (255)
T ss_pred hhcccceeeecchhccCchHHHHHHHHHhchhHHHHH---------HHHHHHHc-------CCchhhcCChhhCCHHHHH
Confidence 332 4789999887776666666654211111 111 12333322 6666667777899999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
|++||||++++|+++||||||++||+.+...+.+.+++.. +++|+|+|||+++.+.. ||+|++| +|++++.|
T Consensus 147 rv~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l-~~~~~~~~ 220 (255)
T cd03236 147 RVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCL-YGEPGAYG 220 (255)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEE-CCCCCcce
Confidence 9999999999999999999999999999999999998875 47999999999999875 9999999 56666544
No 330
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=100.00 E-value=2.9e-38 Score=311.29 Aligned_cols=192 Identities=17% Similarity=0.216 Sum_probs=153.8
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE-ECCEeCCCCCHHHHhccceEEcccCcCCcc-cHHH
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL-IDGQNISNVSQESLREQIGMVTQDTSLLHR-SIRD 452 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~-i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~e 452 (604)
+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .+.|++.+|+. |++|
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~-------------~~~~~~~l~~~ltv~e 68 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL-------------PLGANSFILPGLTGEE 68 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee-------------ccccccccCCcCcHHH
Confidence 78999999999999999999999999999999999999999997 777532 13456778876 9999
Q ss_pred HHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC
Q psy13349 453 NILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530 (604)
Q Consensus 453 Ni~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts 530 (604)
|+.+... ..+.++..+.+. + ...+++ .+++. ...||||||||++||||++.+|+++||||||+
T Consensus 69 nl~~~~~~~~~~~~~~~~~~~-----~-~~~l~~-----~~~~~----~~~lS~G~~qrv~la~al~~~p~llllDEP~~ 133 (213)
T PRK15177 69 NARMMASLYGLDGDEFSHFCY-----Q-LTQLEQ-----CYTDR----VSEYSVTMKTHLAFAINLLLPCRLYIADGKLY 133 (213)
T ss_pred HHHHHHHHcCCCHHHHHHHHH-----H-HhChhH-----Hhhch----HhhcCHHHHHHHHHHHHHhcCCCEEEECCCCc
Confidence 9987421 223333222110 1 112222 33333 34699999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcCcHHH
Q psy13349 531 ALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKNGLYS 594 (604)
Q Consensus 531 ~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~ 594 (604)
++|+.+...+.+.+.+..+++|+|++||+++.+. .||++++|++|++++.|+-++..+..+.|.
T Consensus 134 ~lD~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 198 (213)
T PRK15177 134 TGDNATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCEDLAQATALFEQYQ 198 (213)
T ss_pred cCCHHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCCHHHHHHHHHHHH
Confidence 9999999999998866556789999999999986 599999999999999999888876555443
No 331
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=1.7e-38 Score=384.89 Aligned_cols=213 Identities=30% Similarity=0.485 Sum_probs=177.9
Q ss_pred eEEEEEEEEEeC---CCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC---CCccEEEECCEeCCCCCHHHH
Q psy13349 359 KIFFKNVSFSYD---QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD---IKYGEILIDGQNISNVSQESL 432 (604)
Q Consensus 359 ~i~~~~vsf~y~---~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~I~i~g~~~~~~~~~~~ 432 (604)
.++++||+++|+ +++++|+|||+++++||++||+||||||||||+++|+|..+ |++|+|.+||+++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 478999999995 24579999999999999999999999999999999999997 68899999999974 257
Q ss_pred hccceEEcccCcCC-cccHHHHHhcCC----C-CCCHHHHHHHHHHchHHHHHHH--hhhhhhcCCCccccccCCCCCCh
Q psy13349 433 REQIGMVTQDTSLL-HRSIRDNILYGR----P-DASECELFNAAKCAEADIFIKS--LTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 433 r~~i~~v~Q~~~lf-~~ti~eNi~~g~----~-~~~~~~i~~a~~~~~~~~~i~~--lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
|+.++||+|++.++ ..|++||+.++. | +.++++..+ .+++.++. +.+ -.|+.+|+.|.+|||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~-----~v~~~l~~l~L~~-----~~d~~v~~~~~~LSg 904 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKME-----YVEEVIKLLEMES-----YADAVVGVPGEGLNV 904 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHH-----HHHHHHHHcCChh-----hCCCeeCCCCCCCCH
Confidence 88999999987654 569999999752 2 223333221 11222322 222 468999988889999
Q ss_pred hHHHHHHHHHHHccCCC-eEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhH--HhhcCeEEEEeCC-EEeE
Q psy13349 505 GQRQRIAIARVILKNAP-ILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLST--ISAMDRLIVLDNG-CVAE 579 (604)
Q Consensus 505 Gq~QrialARall~~p~-ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~--~~~~d~i~vl~~G-~iv~ 579 (604)
|||||++|||||+.+|+ +|+||||||+||+.+...+++.|+++. +++|+|+++|+++. .+.+|++++|++| ++++
T Consensus 905 GqrqRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~ 984 (1394)
T TIGR00956 905 EQRKRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVY 984 (1394)
T ss_pred HHhhHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEE
Confidence 99999999999999997 999999999999999999999999874 58999999999986 3679999999997 9999
Q ss_pred ecChhH
Q psy13349 580 EGSHLD 585 (604)
Q Consensus 580 ~g~~~~ 585 (604)
.|+..+
T Consensus 985 ~G~~~~ 990 (1394)
T TIGR00956 985 FGDLGE 990 (1394)
T ss_pred ECCccc
Confidence 998643
No 332
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=100.00 E-value=2.9e-38 Score=350.60 Aligned_cols=213 Identities=22% Similarity=0.343 Sum_probs=174.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-Hhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~ 437 (604)
.++++|+++ .+|+|+||++++||++||+||||||||||+++|+|+.+|++|+|.++|.++...+... .++.++
T Consensus 268 ~l~~~~l~~------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 341 (510)
T PRK15439 268 VLTVEDLTG------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLV 341 (510)
T ss_pred eEEEeCCCC------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcE
Confidence 589999983 2699999999999999999999999999999999999999999999999998766544 467899
Q ss_pred EEcccC---cCCcc-cHHHHHhcCC----CC-CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhHH
Q psy13349 438 MVTQDT---SLLHR-SIRDNILYGR----PD-ASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQR 507 (604)
Q Consensus 438 ~v~Q~~---~lf~~-ti~eNi~~g~----~~-~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq~ 507 (604)
|+||++ .+|+. |+.||+.... +. ....+. ...+.++++.+ |+. .........||||||
T Consensus 342 ~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-------~l~~~~~~~~~~~LSgG~k 409 (510)
T PRK15439 342 YLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARE-----NAVLERYRRAL-------NIKFNHAEQAARTLSGGNQ 409 (510)
T ss_pred ECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHH-----HHHHHHHHHHc-------CCCCCCccCccccCCcHHH
Confidence 999985 36754 9999986421 10 011111 11123333333 554 345666778999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhH
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 585 (604)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+++..|+.++
T Consensus 410 qrl~la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~ 489 (510)
T PRK15439 410 QKVLIAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAA 489 (510)
T ss_pred HHHHHHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEcccc
Confidence 99999999999999999999999999999999999998875 47899999999998865 89999999999999998887
Q ss_pred Hhhc
Q psy13349 586 LLKK 589 (604)
Q Consensus 586 l~~~ 589 (604)
+...
T Consensus 490 ~~~~ 493 (510)
T PRK15439 490 INVD 493 (510)
T ss_pred CCHH
Confidence 6533
No 333
>TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit. This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included).
Probab=100.00 E-value=4.7e-38 Score=328.90 Aligned_cols=185 Identities=29% Similarity=0.479 Sum_probs=154.4
Q ss_pred EEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHHHHHhcCCC--CCCHHHHH
Q psy13349 391 LVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGRP--DASECELF 467 (604)
Q Consensus 391 ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~ 467 (604)
|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++|++|++.+|+. |++||+.++.. ..+.++..
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~--~~~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~ 78 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP--HLRHINMVFQSYALFPHMTVEENVAFGLKMRKVPRAEIK 78 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH--HHCCEEEEecCccccCCCcHHHHHHHHHhhcCCCHHHHH
Confidence 689999999999999999999999999999999876654 36789999999999976 99999998632 12222211
Q ss_pred HHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13349 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL 547 (604)
Q Consensus 468 ~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~ 547 (604)
+ .+.+.++.+ |++........+||||||||++|||||+++|+++||||||++||+.+.+.+.+.|++.
T Consensus 79 ~-----~~~~~l~~~-------~l~~~~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l 146 (325)
T TIGR01187 79 P-----RVLEALRLV-------QLEEFADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTI 146 (325)
T ss_pred H-----HHHHHHHHc-------CCcchhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHH
Confidence 1 112222222 5555566667799999999999999999999999999999999999999999999887
Q ss_pred hC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 548 MK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 548 ~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 147 ~~~~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g~~~~~~~~ 191 (325)
T TIGR01187 147 QEQLGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIGTPEEIYEE 191 (325)
T ss_pred HHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 53 7899999999998654 999999999999999999999865
No 334
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=100.00 E-value=8.5e-38 Score=288.87 Aligned_cols=143 Identities=38% Similarity=0.618 Sum_probs=134.3
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|+++.|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|.+||. +.++|+
T Consensus 1 l~~~~l~~~~~~-~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~-----------~~i~~~ 68 (144)
T cd03221 1 IELENLSKTYGG-KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST-----------VKIGYF 68 (144)
T ss_pred CEEEEEEEEECC-ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe-----------EEEEEE
Confidence 478999999975 46999999999999999999999999999999999999999999999994 479999
Q ss_pred cccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q psy13349 440 TQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN 519 (604)
Q Consensus 440 ~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~ 519 (604)
+| ||+||+||++||||++++
T Consensus 69 ~~------------------------------------------------------------lS~G~~~rv~laral~~~ 88 (144)
T cd03221 69 EQ------------------------------------------------------------LSGGEKMRLALAKLLLEN 88 (144)
T ss_pred cc------------------------------------------------------------CCHHHHHHHHHHHHHhcC
Confidence 98 999999999999999999
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCE
Q psy13349 520 APILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGC 576 (604)
Q Consensus 520 p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~ 576 (604)
|+++||||||++||+.+...+.+.+++. ++|++++||+++.+.. ||++++|++|+
T Consensus 89 p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 89 PNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999876 4799999999998865 89999999986
No 335
>PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional
Probab=100.00 E-value=1.3e-37 Score=344.24 Aligned_cols=212 Identities=25% Similarity=0.382 Sum_probs=170.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE-SLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~-~~r~~i~ 437 (604)
.|+++|+++.| +++|+|+||++++||+++|+||||||||||+++|+|+.+|++|+|.++|.++...+.. ..++.++
T Consensus 250 ~i~~~~l~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~ 326 (491)
T PRK10982 250 ILEVRNLTSLR---QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFA 326 (491)
T ss_pred EEEEeCccccc---CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCE
Confidence 58999999974 3599999999999999999999999999999999999999999999999999876653 4577899
Q ss_pred EEcccCc---CCcc-cHHHHHhcC-----CCC---CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCCh
Q psy13349 438 MVTQDTS---LLHR-SIRDNILYG-----RPD---ASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSG 504 (604)
Q Consensus 438 ~v~Q~~~---lf~~-ti~eNi~~g-----~~~---~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSg 504 (604)
|+||++. +|+. |+.+|..+. .+. .+..+.. ....++++.+ |+. -.......+|||
T Consensus 327 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~-------~l~~~~~~~~~~~LSg 394 (491)
T PRK10982 327 LVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMK-----SDTQWVIDSM-------RVKTPGHRTQIGSLSG 394 (491)
T ss_pred EcCCchhhCCcccCCcHHHheehhhhhhhcccccccCcHHHH-----HHHHHHHHhc-------CccCCCcccccccCCc
Confidence 9999963 6654 777774322 110 1111111 1122333333 332 124556679999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecC
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~ 582 (604)
|||||++||||++.+|+||||||||++||+.+.+.+++.+.++. +++|+|+|||+++.+.. |||+++|++|+++..++
T Consensus 395 Gq~qrv~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~ 474 (491)
T PRK10982 395 GNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVD 474 (491)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEc
Confidence 99999999999999999999999999999999999999998765 58999999999998765 89999999999998876
Q ss_pred hhH
Q psy13349 583 HLD 585 (604)
Q Consensus 583 ~~~ 585 (604)
.++
T Consensus 475 ~~~ 477 (491)
T PRK10982 475 TKT 477 (491)
T ss_pred ccc
Confidence 543
No 336
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=100.00 E-value=8.4e-38 Score=345.78 Aligned_cols=210 Identities=27% Similarity=0.360 Sum_probs=166.4
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEECCEeCCC-CCHHHHhcc
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-KYGEILIDGQNISN-VSQESLREQ 435 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~~~~~-~~~~~~r~~ 435 (604)
..++++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.. .+...+|+.
T Consensus 259 ~~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 337 (490)
T PRK10938 259 PRIVLNNGVVSYND-RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKH 337 (490)
T ss_pred ceEEEeceEEEECC-eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhh
Confidence 35999999999975 4699999999999999999999999999999999998876 69999999987632 233456788
Q ss_pred ceEEcccCcCCc---ccHHHHHhcCCCC-------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCCh
Q psy13349 436 IGMVTQDTSLLH---RSIRDNILYGRPD-------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSG 504 (604)
Q Consensus 436 i~~v~Q~~~lf~---~ti~eNi~~g~~~-------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSg 504 (604)
++|++|++.++. .|+++++..+... ...+ .. ....+.++.+ |++. .......+|||
T Consensus 338 i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~~~~~l~~~-------~l~~~~~~~~~~~LSg 404 (490)
T PRK10938 338 IGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDR-QQ-----KLAQQWLDIL-------GIDKRTADAPFHSLSW 404 (490)
T ss_pred ceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHH-HH-----HHHHHHHHHc-------CCchhhccCchhhCCH
Confidence 999999987642 3677776543110 1111 00 1112223222 5554 45556679999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-C-cEEEEEccChhHHhh--cCeEEEEeCCEEeEe
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-G-KTVIAIAHRLSTISA--MDRLIVLDNGCVAEE 580 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~-~t~i~itH~l~~~~~--~d~i~vl~~G~iv~~ 580 (604)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ + .|+|+|||+++.+.. ||++++|++|++++.
T Consensus 405 Gq~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~ 484 (490)
T PRK10938 405 GQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRY 484 (490)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEe
Confidence 999999999999999999999999999999999999999988753 4 469999999999864 799999999999875
Q ss_pred c
Q psy13349 581 G 581 (604)
Q Consensus 581 g 581 (604)
-
T Consensus 485 ~ 485 (490)
T PRK10938 485 V 485 (490)
T ss_pred e
Confidence 3
No 337
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-37 Score=295.46 Aligned_cols=216 Identities=25% Similarity=0.471 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.+++++|+++|++ +.|++|+||++++|++.|++|||||||||.+++|+|+.+|++|+|.++|.+++. ..+++|||
T Consensus 2 ~L~ie~vtK~Fg~-k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~----~~~~rIGy 76 (300)
T COG4152 2 ALEIEGVTKSFGD-KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQ----EIKNRIGY 76 (300)
T ss_pred ceEEecchhccCc-eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhh----hhhhhccc
Confidence 4789999999975 569999999999999999999999999999999999999999999999998764 46778999
Q ss_pred EcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
+|.+--|++. |+.|-|.|... ..+..|+.+ .++.|.+++ ++--.-+..-..||-|.+|+|-+--|
T Consensus 77 LPEERGLy~k~tv~dql~yla~LkGm~~~e~~~-----~~~~wLer~-------~i~~~~~~kIk~LSKGnqQKIQfisa 144 (300)
T COG4152 77 LPEERGLYPKMTVEDQLKYLAELKGMPKAEIQK-----KLQAWLERL-------EIVGKKTKKIKELSKGNQQKIQFISA 144 (300)
T ss_pred ChhhhccCccCcHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHhc-------cccccccchHHHhhhhhhHHHHHHHH
Confidence 9999999965 99999988532 334444332 345566654 22223345667899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcCc
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKNG 591 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~ 591 (604)
++++|+++|||||+|+|||-+.+.+.+.+.+++ +|.|||+.|||++-++. ||+++.|++|+.|-+|+-++..+..|
T Consensus 145 viHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~v~~ir~~~G 222 (300)
T COG4152 145 VIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222 (300)
T ss_pred HhcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEeccHHHHHHhcC
Confidence 999999999999999999999999999998876 59999999999999877 99999999999999999999877544
No 338
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=100.00 E-value=2.3e-36 Score=283.72 Aligned_cols=154 Identities=44% Similarity=0.690 Sum_probs=144.5
Q ss_pred EEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcc
Q psy13349 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQ 441 (604)
Q Consensus 362 ~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q 441 (604)
++|++|.|++ +++++++||++++|++++|+|+||||||||+++|+|+++|++|+|+++|.++.......+++.++|++|
T Consensus 2 ~~~~~~~~~~-~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~q 80 (157)
T cd00267 2 IENLSFRYGG-RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQ 80 (157)
T ss_pred eEEEEEEeCC-eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEee
Confidence 6899999975 469999999999999999999999999999999999999999999999999887777788889999999
Q ss_pred cCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q psy13349 442 DTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP 521 (604)
Q Consensus 442 ~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ 521 (604)
|||||+||++||||++.+|+
T Consensus 81 ------------------------------------------------------------lS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 81 ------------------------------------------------------------LSGGQRQRVALARALLLNPD 100 (157)
T ss_pred ------------------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHHhh-cCeEEEEeCCE
Q psy13349 522 ILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA-MDRLIVLDNGC 576 (604)
Q Consensus 522 ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~ 576 (604)
+++|||||++||+.+...+.+.+.+..+ ++|++++||+++.+.. ||+++++++|+
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 9999999999999999999999988754 5899999999999988 59999999875
No 339
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.6e-36 Score=345.13 Aligned_cols=199 Identities=29% Similarity=0.392 Sum_probs=161.4
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++||++.|++++++|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.+++ +..|+
T Consensus 507 ~~L~~~~ls~~y~~~~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~ig 575 (718)
T PLN03073 507 PIISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRMA 575 (718)
T ss_pred ceEEEEeeEEEeCCCCeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeEE
Confidence 3599999999997555699999999999999999999999999999999999999999999875 23799
Q ss_pred EEcccCcCCcccHHHHHhcC----CCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHHHH
Q psy13349 438 MVTQDTSLLHRSIRDNILYG----RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 438 ~v~Q~~~lf~~ti~eNi~~g----~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~Qrial 512 (604)
|++|++. ...++.+|..+. .+..+++++..+++.. |+.. ........||||||||++|
T Consensus 576 yv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~----------------gl~~~~~~~~~~~LSgGqkqRvaL 638 (718)
T PLN03073 576 VFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF----------------GVTGNLALQPMYTLSGGQKSRVAF 638 (718)
T ss_pred EEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHC----------------CCChHHhcCCccccCHHHHHHHHH
Confidence 9999863 223455553211 1233444444444433 3331 2334567899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEe-EecChhHH
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVA-EEGSHLDL 586 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l 586 (604)
|||++.+|++|||||||++||+.+...+.+.+.+. + .|+|+|||++..+.. ||++++|++|+++ ..|++++.
T Consensus 639 AraL~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~-~-gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~ 712 (718)
T PLN03073 639 AKITFKKPHILLLDEPSNHLDLDAVEALIQGLVLF-Q-GGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDY 712 (718)
T ss_pred HHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHH
Confidence 99999999999999999999999999999988765 3 499999999998876 8999999999998 67887764
No 340
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=100.00 E-value=2.4e-36 Score=338.49 Aligned_cols=202 Identities=25% Similarity=0.387 Sum_probs=165.4
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ + ..++
T Consensus 323 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~----------~~i~ 390 (556)
T PRK11819 323 KVIEAENLSKSFGD-RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T----------VKLA 390 (556)
T ss_pred eEEEEEeEEEEECC-eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c----------eEEE
Confidence 35999999999975 4699999999999999999999999999999999999999999999954 2 1599
Q ss_pred EEcccC-cCCcc-cHHHHHhcCCCCC--C--HHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHH
Q psy13349 438 MVTQDT-SLLHR-SIRDNILYGRPDA--S--ECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 438 ~v~Q~~-~lf~~-ti~eNi~~g~~~~--~--~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~Qri 510 (604)
|+||++ .++.. |++||+.++.... . +.+.. +.+..+ |+.. ........||||||||+
T Consensus 391 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~---------~~l~~~-------~l~~~~~~~~~~~LSgG~~qrv 454 (556)
T PRK11819 391 YVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSR---------AYVGRF-------NFKGGDQQKKVGVLSGGERNRL 454 (556)
T ss_pred EEeCchhhcCCCCCHHHHHHhhcccccccccHHHHH---------HHHHhC-------CCChhHhcCchhhCCHHHHHHH
Confidence 999997 56654 9999998763211 1 11111 122222 4432 23455678999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeC-CEEe-EecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDN-GCVA-EEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~-G~iv-~~g~~~~l~ 587 (604)
+||||++.+|++|||||||++||+.+...+.+.|.+.. .|+|+|||+++.+.. ||+|++|++ |+++ ..|+++++.
T Consensus 455 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~~~g~~~~~~ 532 (556)
T PRK11819 455 HLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEWFEGNFQEYE 532 (556)
T ss_pred HHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEEecCCHHHHH
Confidence 99999999999999999999999999999999998863 499999999998765 899999986 7876 478888776
Q ss_pred hc
Q psy13349 588 KK 589 (604)
Q Consensus 588 ~~ 589 (604)
+.
T Consensus 533 ~~ 534 (556)
T PRK11819 533 ED 534 (556)
T ss_pred HH
Confidence 54
No 341
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=100.00 E-value=2.7e-36 Score=337.86 Aligned_cols=203 Identities=24% Similarity=0.396 Sum_probs=164.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|.+++ + ..|+
T Consensus 321 ~~l~~~~l~~~~~~-~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------~~i~ 388 (552)
T TIGR03719 321 KVIEAENLSKGFGD-KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------VKLA 388 (552)
T ss_pred eEEEEeeEEEEECC-eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c----------eEEE
Confidence 35999999999975 4699999999999999999999999999999999999999999999954 2 1699
Q ss_pred EEcccCc-CCc-ccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHHHH
Q psy13349 438 MVTQDTS-LLH-RSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 438 ~v~Q~~~-lf~-~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~Qrial 512 (604)
|++|++. +++ .|++||+.++.+. ....+. ...+.+..+ |+.. .......+||||||||++|
T Consensus 389 ~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~-------~~~~~l~~~-------~l~~~~~~~~~~~LSgGe~qrv~l 454 (552)
T TIGR03719 389 YVDQSRDALDPNKTVWEEISGGLDIIQLGKREV-------PSRAYVGRF-------NFKGSDQQKKVGQLSGGERNRVHL 454 (552)
T ss_pred EEeCCccccCCCCcHHHHHHhhccccccCcchH-------HHHHHHHhC-------CCChhHhcCchhhCCHHHHHHHHH
Confidence 9999974 664 4999999886431 111110 011222222 4533 2345567899999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeC-CEEe-EecChhHHhh
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDN-GCVA-EEGSHLDLLK 588 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~-G~iv-~~g~~~~l~~ 588 (604)
||||+.+|++|||||||++||+.+...+.+.|.++. .|+|+|||+++.+.. ||+|++|++ |+++ ..|++++..+
T Consensus 455 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~~~g~~~~~~~ 531 (552)
T TIGR03719 455 AKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEWFEGNYSEYEE 531 (552)
T ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEEeCCCHHHHHH
Confidence 999999999999999999999999999999998873 499999999998875 899999987 5876 5688776654
No 342
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=342.10 Aligned_cols=199 Identities=28% Similarity=0.446 Sum_probs=163.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.|+++||++.|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+++. ..++|
T Consensus 312 ~l~~~~l~~~y~~-~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~igy 379 (638)
T PRK10636 312 LLKMEKVSAGYGD-RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKLGY 379 (638)
T ss_pred eEEEEeeEEEeCC-eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEEEE
Confidence 5999999999975 56999999999999999999999999999999999999999999999741 26999
Q ss_pred EcccC--cCCc-ccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHHHHHH
Q psy13349 439 VTQDT--SLLH-RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 439 v~Q~~--~lf~-~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~QrialAR 514 (604)
++|++ .+.. .|+.+++....+...++++...++.. |+.. ........||||||||++|||
T Consensus 380 ~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~----------------~l~~~~~~~~~~~LSgGekqRl~La~ 443 (638)
T PRK10636 380 FAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGF----------------GFQGDKVTEETRRFSGGEKARLVLAL 443 (638)
T ss_pred ecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHc----------------CCChhHhcCchhhCCHHHHHHHHHHH
Confidence 99985 3443 38888874222222222222222222 3422 334455689999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEe-EecChhHHh
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVA-EEGSHLDLL 587 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l~ 587 (604)
|++.+|++|||||||++||+.+...+.+.|.++ + .|+|+|||++..+.. ||+|++|++|+++ ..|++++..
T Consensus 444 ~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~-~-gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~ 516 (638)
T PRK10636 444 IVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF-E-GALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQ 516 (638)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc-C-CeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHH
Confidence 999999999999999999999999999999887 3 499999999998875 8999999999997 789988874
No 343
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=100.00 E-value=1.7e-36 Score=292.07 Aligned_cols=211 Identities=28% Similarity=0.418 Sum_probs=176.0
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccc
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQI 436 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i 436 (604)
.-|+++||++.|.+ +++|+|+|++|++||..+|+||||||||||+++++|.++|++|.+.+.|+....-+. .++|++|
T Consensus 30 ~li~l~~v~v~r~g-k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~~~elrk~I 108 (257)
T COG1119 30 PLIELKNVSVRRNG-KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGETIFELRKRI 108 (257)
T ss_pred ceEEecceEEEECC-EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcchHHHHHHh
Confidence 35999999999965 679999999999999999999999999999999999999999999999999987776 8999999
Q ss_pred eEEcccCc-CC--cccHHHHHhcCC------C--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 437 GMVTQDTS-LL--HRSIRDNILYGR------P--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 437 ~~v~Q~~~-lf--~~ti~eNi~~g~------~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
|+|+-+-. -| +.+++|-+.-|. . ..++++...+ ...++.+ |.....++.-..||-|
T Consensus 109 G~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a------~~lle~~-------g~~~la~r~~~~LS~G 175 (257)
T COG1119 109 GLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAA------QWLLELL-------GAKHLADRPFGSLSQG 175 (257)
T ss_pred CccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHH------HHHHHHc-------chhhhccCchhhcCHh
Confidence 99997543 23 447777776442 1 2344333222 1222222 6666666777899999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC---CcEEEEEccChhHHhhc-CeEEEEeCCEEeEec
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK---GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~---~~t~i~itH~l~~~~~~-d~i~vl~~G~iv~~g 581 (604)
||||+-|||||+++|++|||||||++||....+.+.+.+.+... ..|+|+|||+.+.+..| ++++.+++|+++.+|
T Consensus 176 e~rrvLiaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g 255 (257)
T COG1119 176 EQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeecc
Confidence 99999999999999999999999999999999999999988752 67999999999987765 999999999999887
Q ss_pred C
Q psy13349 582 S 582 (604)
Q Consensus 582 ~ 582 (604)
.
T Consensus 256 ~ 256 (257)
T COG1119 256 K 256 (257)
T ss_pred c
Confidence 4
No 344
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=100.00 E-value=2.3e-36 Score=287.62 Aligned_cols=156 Identities=26% Similarity=0.341 Sum_probs=136.9
Q ss_pred EEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEccc
Q psy13349 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQD 442 (604)
Q Consensus 363 ~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~ 442 (604)
.|+++.|++ ++++++ +|++++||+++|+||||||||||+++|+|+++|++|+|.++|.+ ++|++|+
T Consensus 4 ~~l~~~~~~-~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~------------i~~~~q~ 69 (177)
T cd03222 4 PDCVKRYGV-FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT------------PVYKPQY 69 (177)
T ss_pred CCeEEEECC-EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEE------------EEEEccc
Confidence 588999965 568888 49999999999999999999999999999999999999999953 7888886
Q ss_pred CcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCe
Q psy13349 443 TSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI 522 (604)
Q Consensus 443 ~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~i 522 (604)
+. ||||||||++||||++.+|++
T Consensus 70 ~~---------------------------------------------------------LSgGq~qrv~laral~~~p~l 92 (177)
T cd03222 70 ID---------------------------------------------------------LSGGELQRVAIAAALLRNATF 92 (177)
T ss_pred CC---------------------------------------------------------CCHHHHHHHHHHHHHhcCCCE
Confidence 53 999999999999999999999
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEccChhHHhh-cCeEEEEeCCEEeEe--cChhHHhhc
Q psy13349 523 LLLDEATSALDSEAEIAIQKSLYNLM-K-GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEE--GSHLDLLKK 589 (604)
Q Consensus 523 lilDE~ts~LD~~~~~~i~~~i~~~~-~-~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~--g~~~~l~~~ 589 (604)
++|||||++||+.+.+.+.+.+.+.. + ++|+|++||+++.+.. ||++++|+++-.+.+ |.+..-.+.
T Consensus 93 llLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~~~~~~~~~~~~~~ 164 (177)
T cd03222 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVYGIASQPKGTREG 164 (177)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCccceeccCCcchhHH
Confidence 99999999999999999999998865 3 3899999999999875 999999998866533 555544443
No 345
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=4e-36 Score=341.24 Aligned_cols=204 Identities=25% Similarity=0.401 Sum_probs=163.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++||+++|++ +++++|+||+|++|+++||+||||||||||+++|+|+++|++|+|.+ |.++ .|+|
T Consensus 319 ~l~~~~l~~~~~~-~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i~y 386 (635)
T PRK11147 319 VFEMENVNYQIDG-KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EVAY 386 (635)
T ss_pred eEEEeeeEEEECC-eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EEEE
Confidence 5899999999975 46999999999999999999999999999999999999999999998 4322 5999
Q ss_pred EcccC-cCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDT-SLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~-~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~QrialARa 515 (604)
++|++ .+++. |+.||+.++.+......... .+.+.+..+ |+.. ........||||||||++||||
T Consensus 387 ~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~~LSgGekqRl~la~a 454 (635)
T PRK11147 387 FDQHRAELDPEKTVMDNLAEGKQEVMVNGRPR-----HVLGYLQDF-------LFHPKRAMTPVKALSGGERNRLLLARL 454 (635)
T ss_pred EeCcccccCCCCCHHHHHHhhcccccccchHH-----HHHHHHHhc-------CCCHHHHhChhhhCCHHHHHHHHHHHH
Confidence 99986 46655 99999987643221000000 112222221 3321 2344456899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEe-CCEEeE-ecChhHHhh
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLD-NGCVAE-EGSHLDLLK 588 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~-~G~iv~-~g~~~~l~~ 588 (604)
++.+|++|||||||++||+.+...+.+.+++. +.|+|+|||+.+.+.. ||+|++++ +|++++ .|++++.+.
T Consensus 455 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 455 FLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 99999999999999999999999999999876 4599999999998865 89999998 899876 678877643
No 346
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=100.00 E-value=4.3e-36 Score=304.45 Aligned_cols=226 Identities=28% Similarity=0.431 Sum_probs=181.3
Q ss_pred eEEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-----CccEEEECCEeCCCCCHH
Q psy13349 359 KIFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNISNVSQE 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~I~i~g~~~~~~~~~ 430 (604)
-++++|+|..|.. ...++++|||+|.+||++|+||+||||||-.++.++|+++. .+|+|.++|.|+-..+.+
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4789999998853 35699999999999999999999999999999999999865 469999999999998887
Q ss_pred HHhc----cceEEcccCcC--Ccc-cHH----HHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccc
Q psy13349 431 SLRE----QIGMVTQDTSL--LHR-SIR----DNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVG 496 (604)
Q Consensus 431 ~~r~----~i~~v~Q~~~l--f~~-ti~----eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~ 496 (604)
.+|. .|++++|+|.- -+- ||. |-|.+.+. .+-.++..+.++.+|+.+ -.-.+.
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~-------------p~~rl~ 152 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPE-------------PEKRLD 152 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCc-------------hhhhhh
Confidence 7764 69999999963 222 443 33333221 122334444444444322 122334
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEe
Q psy13349 497 EHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLD 573 (604)
Q Consensus 497 e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~ 573 (604)
.-..+||||||||+.||-||..+|++||-||||.|||...+.+|++.++++. -+..+++|||+|+.++. ||||+||.
T Consensus 153 ~yPHeLSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~ 232 (534)
T COG4172 153 AYPHELSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQ 232 (534)
T ss_pred hCCcccCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEe
Confidence 4567899999999999999999999999999999999999999999998875 38999999999999987 79999999
Q ss_pred CCEEeEecChhHHhhc-CcHHHHHH
Q psy13349 574 NGCVAEEGSHLDLLKK-NGLYSRLW 597 (604)
Q Consensus 574 ~G~iv~~g~~~~l~~~-~~~y~~l~ 597 (604)
+|++||+|+.+++.+. ...|.+..
T Consensus 233 ~G~ivE~~~t~~lF~~PqHpYTr~L 257 (534)
T COG4172 233 HGEIVETGTTETLFAAPQHPYTRKL 257 (534)
T ss_pred ccEEeecCcHHHHhhCCCChHHHHH
Confidence 9999999999999875 45576544
No 347
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=4e-36 Score=336.17 Aligned_cols=194 Identities=25% Similarity=0.331 Sum_probs=161.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|+++.|++ ..|+++||++++||+++|+||||||||||+++|+|+.+|++|+|.++ ..++|
T Consensus 340 ~l~~~~ls~~~~~--~~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i~y 404 (590)
T PRK13409 340 LVEYPDLTKKLGD--FSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKISY 404 (590)
T ss_pred EEEEcceEEEECC--EEEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeEEE
Confidence 5899999999964 35999999999999999999999999999999999999999999985 15999
Q ss_pred EcccCcCC-cccHHHHHhcCCCCCC-HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 439 VTQDTSLL-HRSIRDNILYGRPDAS-ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 439 v~Q~~~lf-~~ti~eNi~~g~~~~~-~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+||++.++ +.|++||+.++..... .....++++.. |++........+||||||||++|||||
T Consensus 405 ~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l----------------~l~~~~~~~~~~LSGGe~QRvaiAraL 468 (590)
T PRK13409 405 KPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL----------------QLERLLDKNVKDLSGGELQRVAIAACL 468 (590)
T ss_pred ecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC----------------CCHHHHhCCcccCCHHHHHHHHHHHHH
Confidence 99998765 5699999987532222 11222222222 444444556678999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChh
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 584 (604)
+++|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||++..+.. |||+++|+ |++...|+..
T Consensus 469 ~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~g~~~ 538 (590)
T PRK13409 469 SRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKHGHAS 538 (590)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-CcceeeeecC
Confidence 999999999999999999999999999998753 7899999999998765 89999996 5887777633
No 348
>COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=1.9e-36 Score=284.49 Aligned_cols=205 Identities=26% Similarity=0.354 Sum_probs=171.6
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCc--CCcc-
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTS--LLHR- 448 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~- 448 (604)
++++|+++|++|++|+++-++|.||||||||+|.++|-..|++|+|.|||+|+..++....-..++-|+|||. .+..
T Consensus 18 ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~~RA~~larVfQdp~~gt~~~l 97 (263)
T COG1101 18 EKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL 97 (263)
T ss_pred HHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHHHHhhHHHHHhcchhhCCcccc
Confidence 4679999999999999999999999999999999999999999999999999999999988889999999996 4644
Q ss_pred cHHHHHhcCCCCCCHHHHHH---HHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEE
Q psy13349 449 SIRDNILYGRPDASECELFN---AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL 525 (604)
Q Consensus 449 ti~eNi~~g~~~~~~~~i~~---a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ilil 525 (604)
||.||+.++...-...-+.. .-++....+.+..+|. |+...++.+-.-|||||||-++|+-|-++.|+||+|
T Consensus 98 TieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~l-----gLenrL~~~iglLSGGQRQalsL~MAtl~~pkiLLL 172 (263)
T COG1101 98 TIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGL-----GLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLL 172 (263)
T ss_pred cHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhccc-----chhhhhcChhhhccchHHHHHHHHHHhcCCCcEEEe
Confidence 99999988642100000111 1122333455666776 888888888889999999999999999999999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 526 DEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 526 DE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
||-|+||||.+.+.|++.=.+.- .+-|.++|||.++.+-+ -+|.++|++|+||-+=
T Consensus 173 DEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 173 DEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred cchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 99999999999999988755542 35799999999986555 6999999999999643
No 349
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=6.1e-36 Score=361.63 Aligned_cols=211 Identities=29% Similarity=0.435 Sum_probs=173.3
Q ss_pred eEEEEEEEEEeCC------------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEECCEeC
Q psy13349 359 KIFFKNVSFSYDQ------------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI--KYGEILIDGQNI 424 (604)
Q Consensus 359 ~i~~~~vsf~y~~------------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~~~ 424 (604)
.+.++||++..+. ++++|+|||+++++||++||+||||||||||+++|+|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 6899999998742 23699999999999999999999999999999999999764 689999999875
Q ss_pred CCCCHHHHhccceEEcccCcCCcc-cHHHHHhcCC----C-CCCHHH----HHHHHHHchHHHHHHHhhhhhhcCCCccc
Q psy13349 425 SNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGR----P-DASECE----LFNAAKCAEADIFIKSLTDEHGRKGYDAH 494 (604)
Q Consensus 425 ~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~----~-~~~~~~----i~~a~~~~~~~~~i~~lp~~~~~~g~~t~ 494 (604)
. ...+++.++||+|++.+++. |++||+.++. | +.+.++ +.++++..++.+ -.|+.
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~------------~~~~~ 1011 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDN------------LKDAI 1011 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChh------------HhCCc
Confidence 4 34567789999999887755 9999998742 2 223322 222333333221 24677
Q ss_pred cccCC-CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhH--HhhcCeEE
Q psy13349 495 VGEHG-IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLST--ISAMDRLI 570 (604)
Q Consensus 495 v~e~g-~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~--~~~~d~i~ 570 (604)
+|..+ ..||||||||++|||+|+.+|++|+||||||+||+.+...+++.++++. +++|+|+++|+++. .+.+|+++
T Consensus 1012 vg~~~~~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vl 1091 (1470)
T PLN03140 1012 VGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELL 1091 (1470)
T ss_pred cCCCCCCCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEE
Confidence 77544 6899999999999999999999999999999999999999999998875 47999999999984 57799999
Q ss_pred EEeC-CEEeEecChh
Q psy13349 571 VLDN-GCVAEEGSHL 584 (604)
Q Consensus 571 vl~~-G~iv~~g~~~ 584 (604)
+|++ |+++..|+..
T Consensus 1092 lL~~gG~~v~~G~~~ 1106 (1470)
T PLN03140 1092 LMKRGGQVIYSGPLG 1106 (1470)
T ss_pred EEcCCCEEEEECCcc
Confidence 9996 8999999854
No 350
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=100.00 E-value=3.1e-36 Score=275.64 Aligned_cols=225 Identities=26% Similarity=0.420 Sum_probs=178.8
Q ss_pred EEEEEEEEEeCC--------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH
Q psy13349 360 IFFKNVSFSYDQ--------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES 431 (604)
Q Consensus 360 i~~~~vsf~y~~--------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~ 431 (604)
++++|+|++|.. ...+.+.|||++++|+++|++|.||||||||+|+|+|+.+|++|+|.+||.++.--+...
T Consensus 5 LeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~Dy~~ 84 (267)
T COG4167 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGDYSF 84 (267)
T ss_pred hhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccchHh
Confidence 567777665532 135899999999999999999999999999999999999999999999999987666666
Q ss_pred HhccceEEcccCc-CCcccHHHHHh--------cC---CCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 432 LREQIGMVTQDTS-LLHRSIRDNIL--------YG---RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 432 ~r~~i~~v~Q~~~-lf~~ti~eNi~--------~g---~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
..++|-+++|||. -|+- |-||. +. .|..-.+++.+.++.+|+ +|+ .+.. ..
T Consensus 85 R~k~IRMiFQDpnts~NP--Rl~iGqiLd~PL~l~T~~~~~~R~~~i~~TL~~VGL------~Pd-------han~--~~ 147 (267)
T COG4167 85 RSKRIRMIFQDPNTSLNP--RLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGL------LPD-------HANY--YP 147 (267)
T ss_pred hhhheeeeecCCccccCh--hhhhhhHhcchhhhcccCChHHHHHHHHHHHHHhcc------Ccc-------cccc--ch
Confidence 6688999999985 2332 22221 10 122334566666666665 454 1111 23
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGC 576 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~ 576 (604)
..||.|||||+||||||+-+|+|+|.||+.++||.....++.+...++. .|-.-|.|+.++..++. +|+|+||++|+
T Consensus 148 ~~la~~QKQRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~ 227 (267)
T COG4167 148 HMLAPGQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGE 227 (267)
T ss_pred hhcCchhHHHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCc
Confidence 5899999999999999999999999999999999999999999876553 48899999999999998 79999999999
Q ss_pred EeEecChhHHhhc--CcHHHHHHHHhh
Q psy13349 577 VAEEGSHLDLLKK--NGLYSRLWRHQN 601 (604)
Q Consensus 577 iv~~g~~~~l~~~--~~~y~~l~~~q~ 601 (604)
+||.|+..++++. ...-++|.+...
T Consensus 228 vvE~G~t~~v~a~P~~~~TkRlieShF 254 (267)
T COG4167 228 VVERGSTADVLASPLHELTKRLIESHF 254 (267)
T ss_pred eeecCChhhhhcCCccHHHHHHHHHHh
Confidence 9999999999875 344566665543
No 351
>PRK10636 putative ABC transporter ATP-binding protein; Provisional
Probab=100.00 E-value=2.5e-35 Score=334.16 Aligned_cols=212 Identities=26% Similarity=0.381 Sum_probs=161.3
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
|+++||+++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .++|+
T Consensus 2 i~i~nls~~~g~-~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~~-----------~i~~~ 69 (638)
T PRK10636 2 IVFSSLQIRRGV-RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGNW-----------QLAWV 69 (638)
T ss_pred EEEEEEEEEeCC-ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCCC-----------EEEEE
Confidence 789999999975 569999999999999999999999999999999999999999999998842 48888
Q ss_pred cccCcCCcccHHHHHhcCCCCC---CH-----------HHHHHHHH---H---chHHHHHHHhhhhhhcCCCc-cccccC
Q psy13349 440 TQDTSLLHRSIRDNILYGRPDA---SE-----------CELFNAAK---C---AEADIFIKSLTDEHGRKGYD-AHVGEH 498 (604)
Q Consensus 440 ~Q~~~lf~~ti~eNi~~g~~~~---~~-----------~~i~~a~~---~---~~~~~~i~~lp~~~~~~g~~-t~v~e~ 498 (604)
+|++..+..|..+++.-+.... +. ..+..... . ......+..+ ....|+. ......
T Consensus 70 ~q~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---L~~lgl~~~~~~~~ 146 (638)
T PRK10636 70 NQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASL---LHGLGFSNEQLERP 146 (638)
T ss_pred ecCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHH---HHhCCCCchhhcCc
Confidence 8876555556666554211000 00 00000000 0 0001111111 1123664 234556
Q ss_pred CCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 499 GIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 499 g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
..+||||||||++|||||+.+|++|||||||++||+.+...+.+.|.+. +.|+|+|||+...+.. ||+|++|++|++
T Consensus 147 ~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L~~G~i 224 (638)
T PRK10636 147 VSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHIEQQSL 224 (638)
T ss_pred hhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEEeCCEE
Confidence 6789999999999999999999999999999999999999999998875 4699999999998865 899999999999
Q ss_pred e-EecChhHHhh
Q psy13349 578 A-EEGSHLDLLK 588 (604)
Q Consensus 578 v-~~g~~~~l~~ 588 (604)
+ ..|++++...
T Consensus 225 ~~~~g~~~~~~~ 236 (638)
T PRK10636 225 FEYTGNYSSFEV 236 (638)
T ss_pred EEecCCHHHHHH
Confidence 7 4788887654
No 352
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=100.00 E-value=2.7e-35 Score=280.01 Aligned_cols=155 Identities=26% Similarity=0.401 Sum_probs=129.1
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHH
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIR 451 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 451 (604)
.+++|+|+||++++|++++|+||||||||||+++++ +++|++.++|.. ... .++.++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~-~~~----~~~~~~~~~q---------- 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFL-PKF----SRNKLIFIDQ---------- 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCcc-ccc----ccccEEEEhH----------
Confidence 357999999999999999999999999999999985 368999998752 111 2345788877
Q ss_pred HHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHHHHHHHHccC--CCeEEEecc
Q psy13349 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRIAIARVILKN--APILLLDEA 528 (604)
Q Consensus 452 eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~QrialARall~~--p~ililDE~ 528 (604)
. +++..+ |+.. ..++...+||||||||++||||++++ |+++|||||
T Consensus 68 ---------------~---------~~l~~~-------~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEP 116 (176)
T cd03238 68 ---------------L---------QFLIDV-------GLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEP 116 (176)
T ss_pred ---------------H---------HHHHHc-------CCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCC
Confidence 1 122222 3332 25667789999999999999999999 999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCE
Q psy13349 529 TSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGC 576 (604)
Q Consensus 529 ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~ 576 (604)
|++||+++.+.+.+.+++.. .++|+|+|||+++.++.||++++|++|+
T Consensus 117 t~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~~~d~i~~l~~g~ 165 (176)
T cd03238 117 STGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLSSADWIIDFGPGS 165 (176)
T ss_pred cccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEECCCC
Confidence 99999999999999998875 5899999999999998899999997654
No 353
>COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=2.5e-35 Score=272.80 Aligned_cols=222 Identities=23% Similarity=0.422 Sum_probs=186.8
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC-EeCCCCCHHH-Hhccc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG-QNISNVSQES-LREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g-~~~~~~~~~~-~r~~i 436 (604)
.++++|||.+|++ -.+|+|+||++.+||.-+|+||||+||||++..|.|-.+|+.|+++++| .|+..++... -|..|
T Consensus 5 iL~~~~vsVsF~G-F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~~IAr~GI 83 (249)
T COG4674 5 ILYLDGVSVSFGG-FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRIARAGI 83 (249)
T ss_pred eEEEeceEEEEcc-eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHHHHHHhcc
Confidence 5789999999975 5699999999999999999999999999999999999999999999999 9999988654 56779
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHH-------HHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRPDASECELFNAA-------KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~-------~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
|--+|.|..|.. |++||+.+.... +..++..+ ++..+++.+.. -|+......-...||.||||
T Consensus 84 GRKFQ~PtVfe~ltV~eNLelA~~~--~k~v~a~L~~r~~~~e~~ride~La~-------igL~~~~~~~A~~LSHGqKQ 154 (249)
T COG4674 84 GRKFQKPTVFENLTVRENLELALNR--DKSVFASLFARLRAEERRRIDELLAT-------IGLGDERDRLAALLSHGQKQ 154 (249)
T ss_pred CccccCCeehhhccHHHHHHHHhcC--CcchHHHhhhhcChhHHHHHHHHHHH-------cccchhhhhhhhhhccchhh
Confidence 999999999966 999999876321 11122221 11122222221 15555555666799999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
++.|+.-+.++|++|+||||++++-.+..++.-+.++++...+++++|-|++..++. ||+|-||..|.+..+|+.+|+.
T Consensus 155 wLEIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsld~v~ 234 (249)
T COG4674 155 WLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQ 234 (249)
T ss_pred hhhhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccHHHhh
Confidence 999999999999999999999999999889999999999999999999999999876 8999999999999999999987
Q ss_pred hcC
Q psy13349 588 KKN 590 (604)
Q Consensus 588 ~~~ 590 (604)
+..
T Consensus 235 ~dp 237 (249)
T COG4674 235 NDP 237 (249)
T ss_pred cCc
Confidence 643
No 354
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-34 Score=274.69 Aligned_cols=223 Identities=26% Similarity=0.381 Sum_probs=183.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHH-Hhcc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--YDIKYGEILIDGQNISNVSQES-LREQ 435 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~~~~~~~~~~-~r~~ 435 (604)
.++++|++.+-.+++++|++|||+|++||+.+|.||||||||||.+.|+|. |.+++|+|.+||+|+.++++++ -|..
T Consensus 3 ~L~I~dLhv~v~~~keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ERAr~G 82 (251)
T COG0396 3 MLEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDERARAG 82 (251)
T ss_pred eeEEeeeEEEecCchhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHHHhcC
Confidence 478999999886545899999999999999999999999999999999998 6889999999999999999865 5778
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCCCC---------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccC--CCCCC
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGRPD---------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEH--GIKLS 503 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~~~---------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~--g~~LS 503 (604)
|..-+|.|.=++| |+.+-+..+... ...+++.++++..++ |...-+| ...+|
T Consensus 83 ifLafQ~P~ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~----------------~~~~l~R~vN~GFS 146 (251)
T COG0396 83 IFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGL----------------DEEFLERYVNEGFS 146 (251)
T ss_pred CEEeecCCccCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCC----------------CHHHhhcccCCCcC
Confidence 9999999999988 888887754211 012233333433333 3322222 23699
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhc--CeEEEEeCCEEeEe
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM--DRLIVLDNGCVAEE 580 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~--d~i~vl~~G~iv~~ 580 (604)
||||.|..|+.+++-+|++.|||||-|+||-.+-+.|-+.+.++. +++++++|||+-..+... |++.||-+|+|+..
T Consensus 147 GGEkKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~s 226 (251)
T COG0396 147 GGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKS 226 (251)
T ss_pred cchHHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEec
Confidence 999999999999999999999999999999999999999998876 589999999999998876 99999999999999
Q ss_pred cChhHHhhc--CcHHHHHHH
Q psy13349 581 GSHLDLLKK--NGLYSRLWR 598 (604)
Q Consensus 581 g~~~~l~~~--~~~y~~l~~ 598 (604)
|.+ ||... +.-|..+.+
T Consensus 227 G~~-el~~~le~~gy~~~~~ 245 (251)
T COG0396 227 GDP-ELAEELEEKGYDWLKE 245 (251)
T ss_pred CCH-HHHHHHHHhchHHhhh
Confidence 999 76542 223655443
No 355
>PRK11147 ABC transporter ATPase component; Reviewed
Probab=100.00 E-value=2.9e-34 Score=326.07 Aligned_cols=211 Identities=27% Similarity=0.352 Sum_probs=159.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.|+++|++++|++ +++|+|+||+|++|+++||+||||||||||+++|+|+++|++|+|.++|.. .+++
T Consensus 3 ~l~i~~ls~~~~~-~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~~-----------~~~~ 70 (635)
T PRK11147 3 LISIHGAWLSFSD-APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQDL-----------IVAR 70 (635)
T ss_pred EEEEeeEEEEeCC-ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCCC-----------EEEE
Confidence 4889999999975 579999999999999999999999999999999999999999999998731 3677
Q ss_pred EcccCcC-CcccHHHHHhcCCCC-----------------CC-HHHHHHHHHH---------chHHHHHHHhhhhhhcCC
Q psy13349 439 VTQDTSL-LHRSIRDNILYGRPD-----------------AS-ECELFNAAKC---------AEADIFIKSLTDEHGRKG 490 (604)
Q Consensus 439 v~Q~~~l-f~~ti~eNi~~g~~~-----------------~~-~~~i~~a~~~---------~~~~~~i~~lp~~~~~~g 490 (604)
++|++.. ..+++.+++..+... .+ ++.+...... ......+..+-+ ..|
T Consensus 71 l~q~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~---~lg 147 (635)
T PRK11147 71 LQQDPPRNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVLA---QLG 147 (635)
T ss_pred eccCCCCCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHHH---hCC
Confidence 8886543 234666665322100 00 1111000000 001111222211 225
Q ss_pred CccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeE
Q psy13349 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRL 569 (604)
Q Consensus 491 ~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i 569 (604)
+. .......||||||||++|||||+.+|++|||||||++||+.+...+.+.|.++ +.|+|+|||+...+.. ||+|
T Consensus 148 l~--~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~--~~tvlivsHd~~~l~~~~d~i 223 (635)
T PRK11147 148 LD--PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF--QGSIIFISHDRSFIRNMATRI 223 (635)
T ss_pred CC--CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhC--CCEEEEEeCCHHHHHHhcCeE
Confidence 53 24456789999999999999999999999999999999999999999999876 3699999999998866 8999
Q ss_pred EEEeCCEEeE-ecChhHHhh
Q psy13349 570 IVLDNGCVAE-EGSHLDLLK 588 (604)
Q Consensus 570 ~vl~~G~iv~-~g~~~~l~~ 588 (604)
++|++|+++. .|++++.+.
T Consensus 224 ~~L~~G~i~~~~g~~~~~~~ 243 (635)
T PRK11147 224 VDLDRGKLVSYPGNYDQYLL 243 (635)
T ss_pred EEEECCEEEEecCCHHHHHH
Confidence 9999999985 699887654
No 356
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein.
Probab=100.00 E-value=7.4e-35 Score=353.30 Aligned_cols=205 Identities=24% Similarity=0.314 Sum_probs=166.5
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC----CCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY----DIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR 448 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~----~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 448 (604)
+++|+|+|+++++||.++|+||||||||||+|+|+|.. .|.+|+|.+||.++.+.+ ..+|+.++||+|++.+|+.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-~~~r~~i~yv~Q~d~~~~~ 152 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-KHYRGDVVYNAETDVHFPH 152 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-hhcCceeEEeccccccCCC
Confidence 45999999999999999999999999999999999986 578999999999886543 3467789999999988865
Q ss_pred -cHHHHHhcCC----C-----CCCHHHHHHHHHHchHHHHHHH--hhhhhhcCCCcccccc-CCCCCChhHHHHHHHHHH
Q psy13349 449 -SIRDNILYGR----P-----DASECELFNAAKCAEADIFIKS--LTDEHGRKGYDAHVGE-HGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 449 -ti~eNi~~g~----~-----~~~~~~i~~a~~~~~~~~~i~~--lp~~~~~~g~~t~v~e-~g~~LSgGq~QrialARa 515 (604)
|++||+.++. | +.+.++..+.. .++.++. |.+ -.||.+|+ ....||||||||++||||
T Consensus 153 lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~lgL~~-----~~~t~vg~~~~~~LSGGerkRvsIA~a 223 (1394)
T TIGR00956 153 LTVGETLDFAARCKTPQNRPDGVSREEYAKHI----ADVYMATYGLSH-----TRNTKVGNDFVRGVSGGERKRVSIAEA 223 (1394)
T ss_pred CCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH----HHHHHHHcCccc-----ccCceeCCCcCCCCCcccchHHHHHHH
Confidence 9999998752 1 12222221110 0112222 222 35778875 456899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChh-H-HhhcCeEEEEeCCEEeEecChhHHh
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLS-T-ISAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~-~-~~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
|+.+|++++||||||+||+.+...+.+.|+++.+ ++|+|+++|+++ . .+.+|+|++|++|+++..|+.+++.
T Consensus 224 L~~~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~~~~~~ 299 (1394)
T TIGR00956 224 SLGGAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGPADKAK 299 (1394)
T ss_pred HHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECCHHHHH
Confidence 9999999999999999999999999999998763 789999999973 4 4569999999999999999998873
No 357
>PRK13409 putative ATPase RIL; Provisional
Probab=100.00 E-value=6.6e-35 Score=326.39 Aligned_cols=193 Identities=22% Similarity=0.321 Sum_probs=155.1
Q ss_pred EEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE-----------ECCEeCCCCCHHH
Q psy13349 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL-----------IDGQNISNVSQES 431 (604)
Q Consensus 363 ~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~-----------i~g~~~~~~~~~~ 431 (604)
++++++|+++..+|++++ ++++||++||+||||||||||+++|+|+++|++|+|. ++|.++.++..+.
T Consensus 77 ~~~~~~yg~~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~~~ 155 (590)
T PRK13409 77 EEPVHRYGVNGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFKKL 155 (590)
T ss_pred cCceEEecCCceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHHHH
Confidence 448899976556999999 9999999999999999999999999999999999997 8998886543211
Q ss_pred --Hhcc----ceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 432 --LREQ----IGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 432 --~r~~----i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
.+.. +.+++|.|.+|.+|++||+.... ..+++.+++ +.+ |++........+||||
T Consensus 156 ~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l---------~~l-------~l~~~~~~~~~~LSgG 216 (590)
T PRK13409 156 YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVV---------ERL-------GLENILDRDISELSGG 216 (590)
T ss_pred hccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHH---------HHc-------CCchhhcCChhhCCHH
Confidence 1123 44555567778889999996421 112222222 222 4544455566789999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCC
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNG 575 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G 575 (604)
||||++|||||+++|++|+||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|
T Consensus 217 e~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~ 287 (590)
T PRK13409 217 ELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGE 287 (590)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCC
Confidence 999999999999999999999999999999999999999987668999999999998866 8999999863
No 358
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=311.09 Aligned_cols=214 Identities=31% Similarity=0.456 Sum_probs=168.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.|+++|++++|+ ++++++|+||++.+|+++||||+||||||||+|+|+|...|++|+|...+.- .++|
T Consensus 3 ~i~~~~ls~~~g-~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~~-----------~v~~ 70 (530)
T COG0488 3 MITLENLSLAYG-DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKGL-----------RVGY 70 (530)
T ss_pred eEEEeeeEEeeC-CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCCc-----------eEEE
Confidence 589999999995 4679999999999999999999999999999999999999999999987621 6999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCCCC--HHHHHHHHH---------HchHH------------HHHHHhhhhhhcCCCccc
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPDAS--ECELFNAAK---------CAEAD------------IFIKSLTDEHGRKGYDAH 494 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~~~--~~~i~~a~~---------~~~~~------------~~i~~lp~~~~~~g~~t~ 494 (604)
++|++.+.+. |+++.+..+..... ..+...+.. ...++ ..+...-. ..|+...
T Consensus 71 l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~---gLg~~~~ 147 (530)
T COG0488 71 LSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALL---GLGFPDE 147 (530)
T ss_pred eCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHh---cCCCCcc
Confidence 9999999966 99999988754211 011111100 00000 01111111 1134333
Q ss_pred cccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEe
Q psy13349 495 VGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLD 573 (604)
Q Consensus 495 v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~ 573 (604)
...-.+||||||-|++|||||+.+||+|+|||||++||.++.+-+.+.|.+. ++ |+|+|||+-.++.. |++|+.++
T Consensus 148 -~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~-~g-tviiVSHDR~FLd~V~t~I~~ld 224 (530)
T COG0488 148 -DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRY-PG-TVIVVSHDRYFLDNVATHILELD 224 (530)
T ss_pred -cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhC-CC-cEEEEeCCHHHHHHHhhheEEec
Confidence 3344689999999999999999999999999999999999999999999865 45 99999999999988 89999999
Q ss_pred CCEEe-EecChhHHhhcC
Q psy13349 574 NGCVA-EEGSHLDLLKKN 590 (604)
Q Consensus 574 ~G~iv-~~g~~~~l~~~~ 590 (604)
.|++. ..|+++..++..
T Consensus 225 ~g~l~~y~Gny~~~~~~r 242 (530)
T COG0488 225 RGKLTPYKGNYSSYLEQK 242 (530)
T ss_pred CCceeEecCCHHHHHHHH
Confidence 99875 678888766543
No 359
>PLN03140 ABC transporter G family member; Provisional
Probab=100.00 E-value=1.3e-34 Score=350.06 Aligned_cols=208 Identities=24% Similarity=0.363 Sum_probs=166.2
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK---YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR- 448 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 448 (604)
+++|+|+|++++|||.++|+||||||||||+|+|+|.++|+ +|+|.+||.++.+.. .|+.++||+|++.+|+.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~---~~~~i~yv~Q~d~~~~~l 254 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV---PRKTSAYISQNDVHVGVM 254 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc---ccceeEEecccccCCCcC
Confidence 45899999999999999999999999999999999999998 999999999986653 36789999999888754
Q ss_pred cHHHHHhcCCC------------CCCHHH----------H---HHHHHHch------HHHHHHHhhhhhhc-CCCccccc
Q psy13349 449 SIRDNILYGRP------------DASECE----------L---FNAAKCAE------ADIFIKSLTDEHGR-KGYDAHVG 496 (604)
Q Consensus 449 ti~eNi~~g~~------------~~~~~~----------i---~~a~~~~~------~~~~i~~lp~~~~~-~g~~t~v~ 496 (604)
|++||+.++.. +.+.++ + .+++...+ .++.++.+ +. .-.||.+|
T Consensus 255 TV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~l----GL~~~~~t~vg 330 (1470)
T PLN03140 255 TVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKIL----GLDICKDTIVG 330 (1470)
T ss_pred cHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHc----CCccccCceeC
Confidence 99999987521 011111 1 01111000 12222222 11 12477787
Q ss_pred cC-CCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccCh--hHHhhcCeEEE
Q psy13349 497 EH-GIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRL--STISAMDRLIV 571 (604)
Q Consensus 497 e~-g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l--~~~~~~d~i~v 571 (604)
+. ...||||||||++|||+|+.+|++++|||||++||+.+...+.+.|++.. .++|+|+++|++ +..+.+|+|++
T Consensus 331 ~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vil 410 (1470)
T PLN03140 331 DEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDIIL 410 (1470)
T ss_pred CccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEEE
Confidence 54 46899999999999999999999999999999999999999999999875 378999999996 35667999999
Q ss_pred EeCCEEeEecChhHHh
Q psy13349 572 LDNGCVAEEGSHLDLL 587 (604)
Q Consensus 572 l~~G~iv~~g~~~~l~ 587 (604)
|++|+++..|+.+++.
T Consensus 411 L~~G~ivy~G~~~~~~ 426 (1470)
T PLN03140 411 LSEGQIVYQGPRDHIL 426 (1470)
T ss_pred eeCceEEEeCCHHHHH
Confidence 9999999999998876
No 360
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=4.7e-34 Score=253.50 Aligned_cols=195 Identities=29% Similarity=0.465 Sum_probs=159.5
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhcc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK---YGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
.+.++||+..-++ ...|-|+||+|.+||++-+.||||||||||+.-+.|.+.++ +|++.+|++++..++.. +++
T Consensus 2 ~l~l~nvsl~l~g-~cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa~--qRq 78 (213)
T COG4136 2 MLCLKNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQ 78 (213)
T ss_pred ceeeeeeeecCCC-ceEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccchh--hhh
Confidence 3678999987765 46899999999999999999999999999999999999885 69999999999877653 568
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCCCC-CCHH----HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGRPD-ASEC----ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~~~-~~~~----~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+|+.+||+.||+- ++.+||.|.-|. ..-+ ....|+++. |++-.......+||||||-|
T Consensus 79 ~GiLFQD~lLFphlsVg~Nl~fAlp~~~KG~aRr~~a~aAL~~~----------------gL~g~f~~dP~tlSGGQrAR 142 (213)
T COG4136 79 IGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERS----------------GLDGAFHQDPATLSGGQRAR 142 (213)
T ss_pred eeeeecccccccccccccceEEecCcccccHHHHhhHHHHHHHh----------------ccchhhhcChhhcCcchHHH
Confidence 9999999999976 999999998763 2221 222233333 55555555666999999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHH-HHh-CCcEEEEEccChhHHhhcCeEEEE
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY-NLM-KGKTVIAIAHRLSTISAMDRLIVL 572 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~-~~~-~~~t~i~itH~l~~~~~~d~i~vl 572 (604)
+++-|+|+..|+.++||||+|.||..-+.+..+... +.. .+-.++.|||++..+..-.||+.|
T Consensus 143 vaL~R~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~DvpagsrVie~ 207 (213)
T COG4136 143 VALLRALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVIEM 207 (213)
T ss_pred HHHHHHHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCCCCCeeeee
Confidence 999999999999999999999999998888877653 222 478999999999988755665554
No 361
>COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=100.00 E-value=3.6e-34 Score=277.96 Aligned_cols=212 Identities=27% Similarity=0.386 Sum_probs=165.4
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEc-ccCcCC-cccHH
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVT-QDTSLL-HRSIR 451 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~-Q~~~lf-~~ti~ 451 (604)
++.+|+||+||||++++++|+|||||||++|+|.|+..|++|.|.++|.+--. +.+++-+++++|. |...+. +-.+.
T Consensus 38 ~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~V~G~~Pf~-~~~~~~~~~~~v~gqk~ql~Wdlp~~ 116 (325)
T COG4586 38 EAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFR-RREEYLRSIGLVMGQKLQLWWDLPAL 116 (325)
T ss_pred hhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEEecCcCcch-hHHHHHHHHHHHhhhhheeeeechhh
Confidence 58999999999999999999999999999999999999999999999987554 2334444565553 333221 11122
Q ss_pred HHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCC
Q psy13349 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531 (604)
Q Consensus 452 eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~ 531 (604)
|-+ ++.++.....-++|-+++....+..+++..+......||-|||-|.-||-||+++|++|+|||||-+
T Consensus 117 ds~----------~v~~~Iy~Ipd~~F~~r~~~l~eiLdl~~~lk~~vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvg 186 (325)
T COG4586 117 DSL----------EVLKLIYEIPDDEFAERLDFLTEILDLEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVG 186 (325)
T ss_pred hhH----------HHHHHHHhCCHHHHHHHHHHHHHHhcchhhhhhhhhhccchHHHHHHHHHHhcCCCcEEEecCCccC
Confidence 222 2333333333333333333222333788888888899999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcCcHHHHH
Q psy13349 532 LDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596 (604)
Q Consensus 532 LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l 596 (604)
||...+..|.+.+++.. .++||++.||.++.+.. ||||+.++.|+++..|+..+|.++-+.|.++
T Consensus 187 LDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~Gqlv~dg~l~~l~~~f~~~k~~ 254 (325)
T COG4586 187 LDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEF 254 (325)
T ss_pred cchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCCcEeecccHHHHHHHhCCceEE
Confidence 99999999999998775 48999999999997755 9999999999999999999998876665543
No 362
>PLN03073 ABC transporter F family; Provisional
Probab=100.00 E-value=1.9e-33 Score=320.03 Aligned_cols=225 Identities=24% Similarity=0.276 Sum_probs=164.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC---CCCccEEEECCEeCCCC--CH---
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY---DIKYGEILIDGQNISNV--SQ--- 429 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~---~~~~G~I~i~g~~~~~~--~~--- 429 (604)
..|+++|++|+|++ +++|+|+||+|++|+++|||||||||||||+++|+|.. .|++|+|.+.++++... +.
T Consensus 176 ~~I~i~nls~~y~~-~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~~~~ 254 (718)
T PLN03073 176 KDIHMENFSISVGG-RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTALQC 254 (718)
T ss_pred eeEEEceEEEEeCC-CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCHHHH
Confidence 46999999999975 46999999999999999999999999999999999864 57899998766543211 11
Q ss_pred ---------HHHhccceEEcccCcCCcccHHHHHhcCCC-CCCH----HHHHHHHHHchH------HHHHHHhhhhhhcC
Q psy13349 430 ---------ESLREQIGMVTQDTSLLHRSIRDNILYGRP-DASE----CELFNAAKCAEA------DIFIKSLTDEHGRK 489 (604)
Q Consensus 430 ---------~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~-~~~~----~~i~~a~~~~~~------~~~i~~lp~~~~~~ 489 (604)
..+++.+++++|++.+...+..+|...... ..+. +++.++.+..+. .+.+..+-. ..
T Consensus 255 v~~~~~~~~~~~~~~~~~~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~---~l 331 (718)
T PLN03073 255 VLNTDIERTQLLEEEAQLVAQQRELEFETETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA---GL 331 (718)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHhhhcccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH---HC
Confidence 113456889999887654455455422110 1111 223333222211 111111111 12
Q ss_pred CCc-cccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cC
Q psy13349 490 GYD-AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MD 567 (604)
Q Consensus 490 g~~-t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d 567 (604)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||++..+.. ||
T Consensus 332 gl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~~d 409 (718)
T PLN03073 332 SFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTVVT 409 (718)
T ss_pred CCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCC
Confidence 553 2233345689999999999999999999999999999999999999999999876 6799999999999876 89
Q ss_pred eEEEEeCCEEe-EecChhHHhh
Q psy13349 568 RLIVLDNGCVA-EEGSHLDLLK 588 (604)
Q Consensus 568 ~i~vl~~G~iv-~~g~~~~l~~ 588 (604)
+|++|++|+++ ..|++++...
T Consensus 410 ~i~~l~~g~i~~~~g~~~~~~~ 431 (718)
T PLN03073 410 DILHLHGQKLVTYKGDYDTFER 431 (718)
T ss_pred EEEEEECCEEEEeCCCHHHHHH
Confidence 99999999996 6788776544
No 363
>KOG0061|consensus
Probab=100.00 E-value=1.5e-33 Score=316.12 Aligned_cols=219 Identities=36% Similarity=0.515 Sum_probs=184.0
Q ss_pred ceEEEEEEEEEeCCC----CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC---CccEEEECCEeCCCCCHH
Q psy13349 358 GKIFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI---KYGEILIDGQNISNVSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~----~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~---~~G~I~i~g~~~~~~~~~ 430 (604)
..++++|++..-+++ +.+|+|||.+++|||..||.||||||||||+++|+|-.++ .+|+|.+||++ .+.+
T Consensus 24 ~~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~---~~~~ 100 (613)
T KOG0061|consen 24 VKLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRP---RDSR 100 (613)
T ss_pred ceeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCcc---Cchh
Confidence 468899999888653 5799999999999999999999999999999999999975 78999999944 4568
Q ss_pred HHhccceEEcccCcCCcc-cHHHHHhcCC----CC-CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccccc-CCCCCC
Q psy13349 431 SLREQIGMVTQDTSLLHR-SIRDNILYGR----PD-ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGE-HGIKLS 503 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~----~~-~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e-~g~~LS 503 (604)
.+++..|||+||..+++. ||+|++.+.. |. .+.++. ....++.+.+|... +=-||.+|. +...+|
T Consensus 101 ~~~~~s~yV~QdD~l~~~LTV~EtL~f~A~lrlp~~~~~~~k-----~~~V~~vi~~LgL~---~~~~t~ig~~~~rgiS 172 (613)
T KOG0061|consen 101 SFRKISGYVQQDDVLLPTLTVRETLRFSALLRLPSSLSKEEK-----RERVEEVISELGLE---KCADTLIGNPGIRGLS 172 (613)
T ss_pred hhhheeEEEcccccccccccHHHHHHHHHHhcCCCCCCHHHH-----HHHHHHHHHHcCCh---hhccceecCCCCCccc
Confidence 899999999999999966 9999998863 22 233332 22334555555321 124678873 446899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChh--HHhhcCeEEEEeCCEEeEe
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLS--TISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~--~~~~~d~i~vl~~G~iv~~ 580 (604)
||||+|++||.-++.||+||++|||||+||..+..++.+.++++. +|||||+.=|.++ ..+..|++++|.+|+++..
T Consensus 173 GGErkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~ 252 (613)
T KOG0061|consen 173 GGERKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYS 252 (613)
T ss_pred cchhhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEe
Confidence 999999999999999999999999999999999999999999876 5999999999997 4677999999999999999
Q ss_pred cChhHHh
Q psy13349 581 GSHLDLL 587 (604)
Q Consensus 581 g~~~~l~ 587 (604)
|+.+++.
T Consensus 253 G~~~~~~ 259 (613)
T KOG0061|consen 253 GSPRELL 259 (613)
T ss_pred cCHHHHH
Confidence 9998875
No 364
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=100.00 E-value=8.3e-33 Score=266.94 Aligned_cols=187 Identities=27% Similarity=0.394 Sum_probs=153.8
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCC--cccH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLL--HRSI 450 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf--~~ti 450 (604)
.++|+||||++.+||.+||||+||||||||+++|+|.|+|++|+|.++|. ++.+..-..=| +.|-
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-------------v~~li~lg~Gf~pelTG 106 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-------------VAPLIELGAGFDPELTG 106 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-------------EehhhhcccCCCcccch
Confidence 36999999999999999999999999999999999999999999999994 33332222223 3489
Q ss_pred HHHHhcCC--CCCCHHHHH----HHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEE
Q psy13349 451 RDNILYGR--PDASECELF----NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524 (604)
Q Consensus 451 ~eNi~~g~--~~~~~~~i~----~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ili 524 (604)
||||.+-. +..+.+|+. +..+-+++.+|+. .| -.++|.|++-|+|+|-|.-.+|+|||
T Consensus 107 reNi~l~~~~~G~~~~ei~~~~~eIieFaELG~fi~-~P---------------vktYSSGM~aRLaFsia~~~~pdILl 170 (249)
T COG1134 107 RENIYLRGLILGLTRKEIDEKVDEIIEFAELGDFID-QP---------------VKTYSSGMYARLAFSVATHVEPDILL 170 (249)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhh-Cc---------------hhhccHHHHHHHHHhhhhhcCCCEEE
Confidence 99997632 233444443 3344455555543 22 25899999999999999999999999
Q ss_pred EeccCCCCCHHHHHHHHHHHHHH-hCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 525 LDEATSALDSEAEIAIQKSLYNL-MKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 525 lDE~ts~LD~~~~~~i~~~i~~~-~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
+||..|..|+.=.++=.+.+.+. .+++|+|+|||+++.++. |||+++|++|+++..|+++|..+
T Consensus 171 lDEvlavGD~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~~~vi~ 236 (249)
T COG1134 171 LDEVLAVGDAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236 (249)
T ss_pred EehhhhcCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCHHHHHH
Confidence 99999999999888888888877 678999999999999877 99999999999999999999875
No 365
>COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=100.00 E-value=8.2e-33 Score=251.28 Aligned_cols=231 Identities=26% Similarity=0.380 Sum_probs=177.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC-----EeCCCCCHHHH-
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG-----QNISNVSQESL- 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g-----~~~~~~~~~~~- 432 (604)
-++++++|..|++. ..-+||||++.|||..+|||+||||||||+++|.+-+.|+.|+|.++. .|+-.++..+.
T Consensus 6 LL~V~~lsk~Yg~~-~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~msEaeRR 84 (258)
T COG4107 6 LLSVSGLSKLYGPG-KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERR 84 (258)
T ss_pred ceeehhhhhhhCCC-cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhchHHHH
Confidence 47899999999764 478999999999999999999999999999999999999999999865 34444554443
Q ss_pred ---hccceEEcccCc--CC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 433 ---REQIGMVTQDTS--LL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 433 ---r~~i~~v~Q~~~--lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
|..-|+|.|+|. |= .-|---||.- ++-+.-.+.+--.+ +.+.+|+++..- . -+.+.+....+|||+
T Consensus 85 ~L~RTeWG~VhQnP~DGLRm~VSAG~NiGE-Rlma~G~RHYG~iR-~~a~~WL~~VEI-----~-~~RiDD~PrtFSGGM 156 (258)
T COG4107 85 RLLRTEWGFVHQNPRDGLRMQVSAGGNIGE-RLMAIGARHYGNIR-AEAQDWLEEVEI-----D-LDRIDDLPRTFSGGM 156 (258)
T ss_pred HHhhhccceeecCccccceeeeccCCccch-hHHhhhhhhhhhHH-HHHHHHHHhccc-----C-cccccCcccccchHH
Confidence 455899999984 11 1121222210 00000011111111 234567766532 2 346777889999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
+||+-|||-|...|+++++||||.+||..-++++++.++.+-. +-.+++|||++..++. +||.+||++|+++|.|-.
T Consensus 157 qQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve~GLT 236 (258)
T COG4107 157 QQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLT 236 (258)
T ss_pred HHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEeccccc
Confidence 9999999999999999999999999999999999999987653 6799999999999887 899999999999999998
Q ss_pred hHHhhc-CcHHHHHHH
Q psy13349 584 LDLLKK-NGLYSRLWR 598 (604)
Q Consensus 584 ~~l~~~-~~~y~~l~~ 598 (604)
+..+.. ...|.++.-
T Consensus 237 DrvLDDP~hPYTQLLV 252 (258)
T COG4107 237 DRVLDDPHHPYTQLLV 252 (258)
T ss_pred cccccCCCCchHHHHH
Confidence 888875 556877653
No 366
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=100.00 E-value=1.4e-33 Score=258.20 Aligned_cols=136 Identities=40% Similarity=0.651 Sum_probs=121.0
Q ss_pred eeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHHHHH
Q psy13349 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDNI 454 (604)
Q Consensus 376 l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi 454 (604)
|+|+||++++||+++|+|+||||||||+++|+|.++|++|+|.++|.++...+....++.++|++|++.+|++ |++||
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~tv~~~- 79 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDIDIEELRRRIGYVPQDPQLFPGLTVREN- 79 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSHHHHHHHTEEEEESSHCHHTTSBHHHH-
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccccccccccccccccccccccccccccc-
Confidence 7899999999999999999999999999999999999999999999999998889999999999999999977 69999
Q ss_pred hcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC
Q psy13349 455 LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530 (604)
Q Consensus 455 ~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts 530 (604)
..++++.++++..++.+ ..++.++.+...||||||||++|||||+++|+++|||||||
T Consensus 80 ------~~~~~~~~~l~~l~~~~------------~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 80 ------ESDERIEEVLKKLGLED------------LLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp ------HHHHHHHHHHHHTTHGG------------GTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred ------ccccccccccccccccc------------ccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 23445555555554422 35777888889999999999999999999999999999997
No 367
>KOG0064|consensus
Probab=99.98 E-value=5.2e-29 Score=259.63 Aligned_cols=501 Identities=15% Similarity=0.187 Sum_probs=298.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH
Q psy13349 38 YILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQVLSGNFPMLLR 117 (604)
Q Consensus 38 ~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 117 (604)
.+..-.++.+.-+++++..+-+-|.++..+...+..++. +.++-++++.+=.++.+...+++ ..+....+|
T Consensus 119 ll~~hs~~Li~RTfLSl~VA~LdGqlVk~Ivrk~~r~F~----~~LlkW~liaiPAtFvNS~Iryl-----e~klaLafr 189 (728)
T KOG0064|consen 119 LLTAQSFFLISRTFLSLFVAKLDGQLVKNIVRKRGRQFL----WDLLKWFLIAIPASFVNSAIRYL-----ESKLALAFR 189 (728)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHH----HHHHHHHhhhccHHHHHHHHHHH-----HHHHHHHHH
Confidence 344444556666777778888888888876654433221 11221111111112222222222 223445566
Q ss_pred HHHHHHHHcCCc---ccccccc-hhHH---HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH--
Q psy13349 118 WNFHRLILNQSI---NFFQEEF-AGRI---ATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYML--FP-- 186 (604)
Q Consensus 118 ~~l~~~ll~~~~---~~f~~~~-~g~l---~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~--lv-- 186 (604)
.++.+|+.++=. .||.-.+ -|.+ =+++++|+....+-..+....+.--++-++...+.+..-+-..+ ..
T Consensus 190 trL~~h~y~~Y~snqTyY~Vsn~d~~i~n~D~sLTeDI~~Fs~svahLysnLtKP~lDl~l~s~~L~~s~~s~g~~~~~~ 269 (728)
T KOG0064|consen 190 TRLTRHAYDMYLSNQTFYKVSNLDSVIENADNSLTEDIAKFSDSVAHLYSNLTKPVLDLILISFTLLDSATSVGAAGITL 269 (728)
T ss_pred HHHHHHHHHHHhccCceEEEecccchhcCccchhHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhhhccccccchhh
Confidence 666655554322 4443222 1111 12456666655555444444443333333222222222221111 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 187 FVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISS 266 (604)
Q Consensus 187 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~ 266 (604)
+.+.+.+-..+.+.+.++.-+...+.....+.+...-+..+.+-++|-.|+..+.+.+..++.++.....-....+...+
T Consensus 270 ~~lvv~lTa~iLr~~sP~Fg~Lv~eeA~r~g~lr~~Hs~ii~NsEEIAfy~GhkvE~~ql~~sy~~L~~qm~li~k~r~~ 349 (728)
T KOG0064|consen 270 AGLVVYLTAFILRAVSPKFGKLVAEEAARKGYLRYLHSNIITNSEEIAFYGGHKVELTQVDESYNRLVEQMNLIFKVRLW 349 (728)
T ss_pred hhhHHHHHHHHHHHhCCchhhHHHHHHhhccHHHHHHHHHhccHHHHHhhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 11112223335566677777777777777778887888899999999999999999999988887776665555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh------------hCccc-----HHHHHHHHH---HHHHHHHHHHHHHHHHHHH--
Q psy13349 267 FEIINHLLAMLLILGTTGCALFLWT------------KGILG-----IGAVAAATA---MSLRLNGISHWVMWEIAAL-- 324 (604)
Q Consensus 267 ~~~~~~~~~~~~~~~i~~~g~~lv~------------~g~lt-----~G~~~~~~~---~~~~l~~~~~~~~~~~~~~-- 324 (604)
+..+-+++.- ..|-|.-++. .+... +...-.|+. +.......+..++...-++
T Consensus 350 YiMleqF~mK-----YvWsg~GlvmvsiPI~~~t~~s~~~~~~~e~~~srt~~f~t~r~LL~saAdAieRlMssyKeItq 424 (728)
T KOG0064|consen 350 YIMLEQFVMK-----YTWSGTGLVMVSIPILTSTLASEGTLQLSEEGNSRTKEFITNRRLLLSAADAIERLMSSYKEITQ 424 (728)
T ss_pred HHHHHHHHHH-----HhhccCceEEEEeeeeecccCCCCcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544443321 0121111111 11110 000111111 1111112222222222211
Q ss_pred -HHHHHHHHHHHHhhcccc----------ccccCc------cccccc-----ccCceEEEEEEEEEeCCCCceeeecceE
Q psy13349 325 -FESIGTIQDGMNMLSKKY----------KIVDNY------NAKRLV-----VTNGKIFFKNVSFSYDQKHLIINNLSLT 382 (604)
Q Consensus 325 -~~~~~~~~~~~~~l~~~~----------~~~~~~------~~~~~~-----~~~~~i~~~~vsf~y~~~~~~l~~isl~ 382 (604)
.....++...++.+++.. +..+.. +..+.+ .....|.++||-.--|+...+...++|+
T Consensus 425 LaGyt~Rv~~mf~v~~dv~~g~~~k~~v~e~~~~~~~~e~r~s~~l~~~~~i~~~~gI~lenIpvItP~~~vvv~~Ltf~ 504 (728)
T KOG0064|consen 425 LAGYTNRVFTMFSVLHDVHKGNYNKTAVPEILSSRTIDESRNSNPLPTTDAIRNFNGIILENIPVITPAGDVLVPKLTFQ 504 (728)
T ss_pred HhhHHHHHHHHHHHHHHHhcccccccccCchhhccCccccccCCcCCccchhhcccceEEecCceeccCcceeecceeEE
Confidence 111122222222222211 110000 000000 1124599999988888776788999999
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCC----
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGR---- 458 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~---- 458 (604)
|++|-.+.|.||||||||+|.++|.|++|.+.|...+-- +.+|-|+||.|+.=-||+||-|-|-+
T Consensus 505 i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~P~-----------~~~mFYIPQRPYms~gtlRDQIIYPdS~e~ 573 (728)
T KOG0064|consen 505 IEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSIPR-----------PNNIFYIPQRPYMSGGTLRDQIIYPDSSEQ 573 (728)
T ss_pred ecCCceEEEECCCCccHHHHHHHHhccCcccCCeeecCC-----------CcceEeccCCCccCcCcccceeecCCcHHH
Confidence 999999999999999999999999999999888776422 23699999999988889999998753
Q ss_pred ---CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHH
Q psy13349 459 ---PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535 (604)
Q Consensus 459 ---~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~ 535 (604)
.+.+|.++...++.+.++..++.- . |+|.+-+ --.-||||||||++.||.++.+|+.-+|||+|||+.++
T Consensus 574 ~~~kg~~d~dL~~iL~~v~L~~i~qr~-~-----g~da~~d-Wkd~LsgGekQR~~mARm~yHrPkyalLDEcTsAvsid 646 (728)
T KOG0064|consen 574 MKRKGYTDQDLEAILDIVHLEHILQRE-G-----GWDAVRD-WKDVLSGGEKQRMGMARMFYHRPKYALLDECTSAVSID 646 (728)
T ss_pred HHhcCCCHHHHHHHHHHhhHHHHHHhc-c-----Chhhhcc-HHhhccchHHHHHHHHHHHhcCcchhhhhhhhcccccc
Confidence 246788999999998887544432 1 5665433 33479999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEE
Q psy13349 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572 (604)
Q Consensus 536 ~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl 572 (604)
.|..+.++.++. +-+.+-||||++..+.-...+..
T Consensus 647 vE~~i~~~ak~~--gi~llsithrpslwk~h~~ll~~ 681 (728)
T KOG0064|consen 647 VEGKIFQAAKDA--GISLLSITHRPSLWKYHTHLLEF 681 (728)
T ss_pred hHHHHHHHHHhc--CceEEEeecCccHHHHHHHHHhc
Confidence 999999998775 78999999999988766555555
No 368
>COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only]
Probab=99.98 E-value=1.7e-31 Score=292.00 Aligned_cols=203 Identities=29% Similarity=0.396 Sum_probs=171.4
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++|+++.|++++++++++||.|++|+++|||||||+|||||+|+|+|-..|.+|+|.++-. -.+|
T Consensus 320 ~vl~~~~~~~~y~~~~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~~-----------v~ig 388 (530)
T COG0488 320 LVLEFENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGET-----------VKIG 388 (530)
T ss_pred eeEEEeccccccCCCceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCCc-----------eEEE
Confidence 46899999999977678999999999999999999999999999999999999999999987542 2699
Q ss_pred EEcccC-cCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 438 MVTQDT-SLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 438 ~v~Q~~-~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|.+|+. .+++. |+.|++.-+.|+..+.++...+...+...- - +......||||||-|++||+.
T Consensus 389 yf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f~F~~~-----------~----~~~~v~~LSGGEk~Rl~La~l 453 (530)
T COG0488 389 YFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGE-----------D----QEKPVGVLSGGEKARLLLAKL 453 (530)
T ss_pred EEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHcCCChH-----------H----HhCchhhcCHhHHHHHHHHHH
Confidence 999987 45544 999999887776556666666655543210 1 123345899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeEe-cChhHHhhc
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEE-GSHLDLLKK 589 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~-g~~~~l~~~ 589 (604)
++.+|.+|||||||++||.++.+.+.++|.+. +-|+|+|||+-..++. |++|+.+++ ++.+. |++++..+.
T Consensus 454 l~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~~y~~~ 526 (530)
T COG0488 454 LLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYEDYLEQ 526 (530)
T ss_pred hccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHHHHHHh
Confidence 99999999999999999999999999999887 3499999999999988 899999998 76665 888776654
No 369
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.8e-31 Score=265.32 Aligned_cols=192 Identities=22% Similarity=0.315 Sum_probs=127.3
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHH-HHHhcCCCCCccEEEECC-------EeCCCCC-H--HHHh-ccceEE
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTIN-NLLLRFYDIKYGEILIDG-------QNISNVS-Q--ESLR-EQIGMV 439 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~-~ll~~~~~~~~G~I~i~g-------~~~~~~~-~--~~~r-~~i~~v 439 (604)
+.++|+|+||+|++||++||+||||||||||+ ..+. .+|++.+.+ ..+.... + ...+ ...++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45699999999999999999999999999996 4443 134432210 0010000 0 0111 123344
Q ss_pred cccCcC-Cc-c-cHH---HHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHHHH
Q psy13349 440 TQDTSL-LH-R-SIR---DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 440 ~Q~~~l-f~-~-ti~---eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~Qrial 512 (604)
.|++.. ++ . ++. +...+...-...++.. ...+.++. .|+.. .......+||||||||++|
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~------~~~~~l~~-------~~l~~~~~~~~~~~LSgG~~qrv~l 148 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYLRLLFARVGIR------ERLGFLVD-------VGLGYLTLSRSAPTLSGGEAQRIRL 148 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHHHHHhhhhhHH------HHHHHHHH-------CCCCcccccCccCcCCHHHHHHHHH
Confidence 444321 11 1 211 1111100000000000 00112222 25654 3567788999999999999
Q ss_pred HHHHccCC--CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEE------eCCEEeEec
Q psy13349 513 ARVILKNA--PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVL------DNGCVAEEG 581 (604)
Q Consensus 513 ARall~~p--~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl------~~G~iv~~g 581 (604)
||||+.+| +++||||||++||+.+...+.+.+++.. ++.|+|+|||+++.++.||+|++| ++|+|+++|
T Consensus 149 aral~~~p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 149 ATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTIRAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred HHHHHhCCCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHHHhCCEEEEeCCCccccCCEEEecC
Confidence 99999998 5999999999999999999999998765 578999999999999899999999 999999987
No 370
>cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=99.97 E-value=1.8e-30 Score=261.34 Aligned_cols=193 Identities=26% Similarity=0.382 Sum_probs=136.5
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh-----c-CC----CCCcc-----------EEEECCEeCCCCCH----
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL-----R-FY----DIKYG-----------EILIDGQNISNVSQ---- 429 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~-----~-~~----~~~~G-----------~I~i~g~~~~~~~~---- 429 (604)
-|+|||++||.|+.++|+|+||||||||++.++ + +. .|..+ -|.+|..++..-+.
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 599999999999999999999999999998652 1 11 12222 35555555532111
Q ss_pred ------HHHhc----------------cceEEcccCcC-CcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhh
Q psy13349 430 ------ESLRE----------------QIGMVTQDTSL-LHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEH 486 (604)
Q Consensus 430 ------~~~r~----------------~i~~v~Q~~~l-f~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~ 486 (604)
+.+|+ .+.|..++... .+.|+.||+.+..... ++. ...+.++
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~~v~~ltv~e~~~~~~~~~---~~~------~~~~~L~------ 154 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEEALEFFENIP---KIA------RKLQTLC------ 154 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHHHHhcCCHHHHHHHHHhhh---hHH------HHHHHHH------
Confidence 11111 12233333222 2335555544432100 000 1111122
Q ss_pred hcCCCcc-ccccCCCCCChhHHHHHHHHHHHccC---CCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChh
Q psy13349 487 GRKGYDA-HVGEHGIKLSGGQRQRIAIARVILKN---APILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLS 561 (604)
Q Consensus 487 ~~~g~~t-~v~e~g~~LSgGq~QrialARall~~---p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~ 561 (604)
..|++. ..++...+|||||+||++|||+|.++ |+++||||||++||+.+...+.+.++++. ++.|+|+|||+++
T Consensus 155 -~vgL~~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~ 233 (261)
T cd03271 155 -DVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLD 233 (261)
T ss_pred -HcCCchhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHH
Confidence 237766 47888899999999999999999996 79999999999999999999999998876 4789999999999
Q ss_pred HHhhcCeEEEE------eCCEEeEecCh
Q psy13349 562 TISAMDRLIVL------DNGCVAEEGSH 583 (604)
Q Consensus 562 ~~~~~d~i~vl------~~G~iv~~g~~ 583 (604)
.++.||++++| ++|+|+++|++
T Consensus 234 ~i~~aD~ii~Lgp~~g~~~G~iv~~Gt~ 261 (261)
T cd03271 234 VIKCADWIIDLGPEGGDGGGQVVASGTP 261 (261)
T ss_pred HHHhCCEEEEecCCcCCCCCEEEEeCCC
Confidence 99999999999 89999999974
No 371
>COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=2.4e-30 Score=239.24 Aligned_cols=187 Identities=26% Similarity=0.410 Sum_probs=156.6
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++.+|++..-+ +..++.++||++.+||.+-|.||||||||||+++|+|+..|++|+|+++|.+++.. ++..++.+-|+
T Consensus 3 L~a~~L~~~R~-e~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~-~~~~~~~l~yL 80 (209)
T COG4133 3 LEAENLSCERG-ERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNV-RESYHQALLYL 80 (209)
T ss_pred chhhhhhhccC-cceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccc-hhhHHHHHHHh
Confidence 34566665543 45689999999999999999999999999999999999999999999999988764 34457789999
Q ss_pred cccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
.-.+-+=.. |++||+.|... ..+++.+++|+..+++.++ +.+| + .+||-||++|+||||-
T Consensus 81 GH~~giK~eLTa~ENL~F~~~~~~~~~~~~i~~Al~~vgL~g~-~dlp-----------~----~~LSAGQqRRvAlArL 144 (209)
T COG4133 81 GHQPGIKTELTALENLHFWQRFHGSGNAATIWEALAQVGLAGL-EDLP-----------V----GQLSAGQQRRVALARL 144 (209)
T ss_pred hccccccchhhHHHHHHHHHHHhCCCchhhHHHHHHHcCcccc-cccc-----------h----hhcchhHHHHHHHHHH
Confidence 988887654 99999998753 2457889999998887653 2233 2 4799999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS 564 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~ 564 (604)
.+..+|++||||||++||.+.+..+-..+.... ++-.||..||....+.
T Consensus 145 ~ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~~ 194 (209)
T COG4133 145 WLSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPIA 194 (209)
T ss_pred HcCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCCC
Confidence 999999999999999999999999988887654 5789999999976554
No 372
>KOG0059|consensus
Probab=99.97 E-value=5.6e-30 Score=299.10 Aligned_cols=219 Identities=25% Similarity=0.380 Sum_probs=185.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC-CHHHHhccc
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV-SQESLREQI 436 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~-~~~~~r~~i 436 (604)
..+..+|+++.|+..+.+.+++|+.+++||+.|+.|+|||||||++|++.|...|++|++.++|.++..- +..+.++++
T Consensus 563 ~~~~~~~L~k~y~~~~~Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~~~~~~~~i 642 (885)
T KOG0059|consen 563 SALVLNNLSKVYGGKDGAVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTDFQQVRKQL 642 (885)
T ss_pred ceEEEcceeeeecchhhhhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccchhhhhhhc
Confidence 4688999999998644499999999999999999999999999999999999999999999999999764 445689999
Q ss_pred eEEcccCcCCcc-cHHHHHhcCC--CCCCHHH----HHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGR--PDASECE----LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~--~~~~~~~----i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
||+||+..+++. |.||.+.+.. ......+ +...++..++.+ ..++ ...++|||+|+|
T Consensus 643 GyCPQ~d~l~~~lT~rEhL~~~arlrG~~~~di~~~v~~ll~~~~L~~------------~~~~----~~~~ySgG~kRk 706 (885)
T KOG0059|consen 643 GYCPQFDALWEELTGREHLEFYARLRGLPRSDIGSAIEKLLRLVGLGP------------YANK----QVRTYSGGNKRR 706 (885)
T ss_pred ccCCchhhhhhhccHHHHHHHHHHHcCCChhHHHHHHHHHHHHcCChh------------hhcc----chhhCCCcchhh
Confidence 999999999976 9999997643 1222223 333333333332 2233 345899999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+++|-|++.+|++++|||||+|+||.+++.+++.+.+..+ ++.+|+.||.++..+. |||+.+|.+|++..-|+.++|.
T Consensus 707 Ls~aialig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciGs~q~LK 786 (885)
T KOG0059|consen 707 LSFAIALIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIGSPQELK 786 (885)
T ss_pred HHHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEecChHHHH
Confidence 9999999999999999999999999999999999998876 4599999999999988 9999999999999999999998
Q ss_pred hcCcH
Q psy13349 588 KKNGL 592 (604)
Q Consensus 588 ~~~~~ 592 (604)
++-|.
T Consensus 787 srfG~ 791 (885)
T KOG0059|consen 787 SRYGS 791 (885)
T ss_pred hhcCC
Confidence 66443
No 373
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=99.97 E-value=2.9e-30 Score=251.02 Aligned_cols=164 Identities=23% Similarity=0.340 Sum_probs=130.6
Q ss_pred eecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---------cEEEECCEeCCCCCHHHHhccceEEcccCcCCc
Q psy13349 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY---------GEILIDGQNISNVSQESLREQIGMVTQDTSLLH 447 (604)
Q Consensus 377 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~---------G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~ 447 (604)
+++++++++| +++|+||||||||||+++|.++..|.. |++.++|.+... ...+.++++|+|+|..+
T Consensus 14 ~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~vfq~~~~~- 88 (197)
T cd03278 14 DKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK---PANFAEVTLTFDNSDGR- 88 (197)
T ss_pred CCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC---CCceEEEEEEEEcCCCc-
Confidence 5789999999 999999999999999999999986653 467777776543 22357899999999877
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc----cCCCeE
Q psy13349 448 RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL----KNAPIL 523 (604)
Q Consensus 448 ~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall----~~p~il 523 (604)
++.. ..+++.++++. + ++ .......||||||||++|||++. ++|+++
T Consensus 89 --------~~~~--~~~~~~~~l~~----------~------~~---~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~il 139 (197)
T cd03278 89 --------YSII--SQGDVSEIIEA----------P------GK---KVQRLSLLSGGEKALTALALLFAIFRVRPSPFC 139 (197)
T ss_pred --------eeEE--ehhhHHHHHhC----------C------Cc---cccchhhcCHHHHHHHHHHHHHHHhccCCCCEE
Confidence 2110 12333333322 1 11 12344689999999999999986 567999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 524 LLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 524 ilDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
+|||||++||+.+...+.+.+++..++.|+|+|||+++.++.||+++.+..
T Consensus 140 llDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~~~~d~v~~~~~ 190 (197)
T cd03278 140 VLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTMEAADRLYGVTM 190 (197)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHhhcceEEEEEe
Confidence 999999999999999999999988778999999999999999999999853
No 374
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=99.96 E-value=5.8e-30 Score=232.01 Aligned_cols=199 Identities=29% Similarity=0.409 Sum_probs=148.8
Q ss_pred eEEEEEEEEEeCC------CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC----EeCCCCC
Q psy13349 359 KIFFKNVSFSYDQ------KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG----QNISNVS 428 (604)
Q Consensus 359 ~i~~~~vsf~y~~------~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g----~~~~~~~ 428 (604)
.+.++|++++|.- .-|+++|+||+++.||++++=||||||||||+++|-+-|.|++|+|.+.- .|+..-+
T Consensus 4 ~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a~ 83 (235)
T COG4778 4 PLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAE 83 (235)
T ss_pred eeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhccC
Confidence 4778888877732 24799999999999999999999999999999999999999999999843 2443333
Q ss_pred H----HHHhccceEEcccCcCCcc-c----HHHHH-hcCCCCCCHHHHHHHHHHchHHHHH--HHhhhhhhcCCCccccc
Q psy13349 429 Q----ESLREQIGMVTQDTSLLHR-S----IRDNI-LYGRPDASECELFNAAKCAEADIFI--KSLTDEHGRKGYDAHVG 496 (604)
Q Consensus 429 ~----~~~r~~i~~v~Q~~~lf~~-t----i~eNi-~~g~~~~~~~~i~~a~~~~~~~~~i--~~lp~~~~~~g~~t~v~ 496 (604)
+ +-.|+.||||+|--...+. + +.|-+ ..|-| .+.-... +.+.+ .++|++.+..
T Consensus 84 pr~vl~vRr~TiGyVSQFLRviPRV~aLdVvaePll~~gv~---~~~a~~~-----a~~Ll~rLnlperLW~L------- 148 (235)
T COG4778 84 PREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLARGVP---REVARAK-----AADLLTRLNLPERLWSL------- 148 (235)
T ss_pred hHHHHHHHHhhhHHHHHHHHhccCcchHHHHHhHHHHcCCC---HHHHHHH-----HHHHHHHcCCCHHHhcC-------
Confidence 3 3346779999995433222 1 22322 22322 1111111 11222 2356533321
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEe
Q psy13349 497 EHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLD 573 (604)
Q Consensus 497 e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~ 573 (604)
-..++||||+||+.|||.++-|-|||+|||||++||..+.+.+.+.|.+.+ +|..++=|=|+-+.-+. |||++-|.
T Consensus 149 -aPaTFSGGEqQRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~ 226 (235)
T COG4778 149 -APATFSGGEQQRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVS 226 (235)
T ss_pred -CCcccCCchheehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeecc
Confidence 246899999999999999999999999999999999999999999998766 68999999999887766 89998874
No 375
>cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.96 E-value=4e-29 Score=251.51 Aligned_cols=191 Identities=25% Similarity=0.379 Sum_probs=136.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh----------------cCCCCCcc-------
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL----------------RFYDIKYG------- 415 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~----------------~~~~~~~G------- 415 (604)
.|+++|. .+|.+ ..++++++ |++++|+||||||||||+++|+ ++..+.+|
T Consensus 3 ~i~~~nf-ksy~~-~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 3 QVIIQGF-KSYKD-QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEEeCc-cCccc-CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 4667765 34653 45788877 8999999999999999999998 44445555
Q ss_pred -EEEECCEeCCC-C--CHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHH----------HHHH
Q psy13349 416 -EILIDGQNISN-V--SQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI----------FIKS 481 (604)
Q Consensus 416 -~I~i~g~~~~~-~--~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~----------~i~~ 481 (604)
+|.+++.+-.. . ....+++.+++++|++.+++. ..+.+++..+++..++.. .+.+
T Consensus 76 v~i~~~~~~~~~~~~~~~~~i~r~ig~~~~~~~l~~~-----------~~t~~ei~~~l~~~gl~~~~~~~~~~qg~i~~ 144 (243)
T cd03272 76 VEIIFDNSDNRFPIDKEEVRLRRTIGLKKDEYFLDKK-----------NVTKNDVMNLLESAGFSRSNPYYIVPQGKINS 144 (243)
T ss_pred EEEEEEcCCCccCCCCCEEEEEEEEECCCCEEEECCe-----------EcCHHHHHHHHHHcCCCCCCCcEEEEcCchHH
Confidence 55555532211 1 122345667888877766532 234445555555443321 1111
Q ss_pred hhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc----cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEc
Q psy13349 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL----KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIA 557 (604)
Q Consensus 482 lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall----~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~it 557 (604)
+- ++....++.+..||||||||++||||++ ++|+++||||||++||+.+.+.+.+.++++.+++|+|++|
T Consensus 145 l~------~l~~~~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~ 218 (243)
T cd03272 145 LT------NMKQDEQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTT 218 (243)
T ss_pred hh------hccccccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 11 2233345678899999999999999996 4689999999999999999999999999887788999999
Q ss_pred cChhHHhhcCeEEEEe
Q psy13349 558 HRLSTISAMDRLIVLD 573 (604)
Q Consensus 558 H~l~~~~~~d~i~vl~ 573 (604)
|+.+..+.||++++|+
T Consensus 219 h~~~~~~~~d~i~~l~ 234 (243)
T cd03272 219 FRPELLEVADKFYGVK 234 (243)
T ss_pred cCHHHHhhCCEEEEEE
Confidence 9988888899999985
No 376
>COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism]
Probab=99.96 E-value=8.3e-30 Score=231.99 Aligned_cols=210 Identities=26% Similarity=0.374 Sum_probs=177.1
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++||+..- -|-.+|.++..||.+-+|||||||||||+..++|+. |-+|+|.++|.++...+..++-++=+|.
T Consensus 4 ~qln~v~~~t-----RL~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~eLArhRAYL 77 (248)
T COG4138 4 MQLNDVAEST-----RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYL 77 (248)
T ss_pred eeeccccccc-----cccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHhHHHHHHHHH
Confidence 5677776532 366799999999999999999999999999999987 6889999999999999999999999999
Q ss_pred cccC-cCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 440 TQDT-SLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 440 ~Q~~-~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
.|+. ..|...+..-+++..|+- ++- ..+ +.|..+- +++..++..-..|||||+||+-+|-.++.
T Consensus 78 sQqq~p~f~mpV~~YL~L~qP~~---~~a-----~~i-~~i~~~L------~l~DKL~Rs~~qLSGGEWQRVRLAav~LQ 142 (248)
T COG4138 78 SQQQTPPFAMPVWHYLTLHQPDK---TRT-----ELL-NDVAGAL------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQ 142 (248)
T ss_pred hhccCCcchhhhhhhhhhcCchH---HHH-----HHH-HHHHhhh------cccchhhhhhhhcCcccceeeEEeEEEEE
Confidence 8864 478889999999988851 111 111 2222221 67777888888999999999999999886
Q ss_pred -----CC--CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChh-HHhhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 519 -----NA--PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 519 -----~p--~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~-~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|| ++|++|||.++||...+..+...+.+.+ +|.|||+.+|+++ +++.||++..++.|++..+|..+|.+..
T Consensus 143 v~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~~~eVlt~ 222 (248)
T COG4138 143 ITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTP 222 (248)
T ss_pred ecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecchhhhcCh
Confidence 33 6999999999999999999988888876 5899999999997 8999999999999999999999998865
Q ss_pred C
Q psy13349 590 N 590 (604)
Q Consensus 590 ~ 590 (604)
+
T Consensus 223 ~ 223 (248)
T COG4138 223 P 223 (248)
T ss_pred H
Confidence 4
No 377
>cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini.
Probab=99.96 E-value=3e-29 Score=247.32 Aligned_cols=193 Identities=19% Similarity=0.138 Sum_probs=142.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEe-CCcEEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQ-PGEKIGLVGRSGAGKSTINNLLLR-FYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~-~G~~~~ivG~sGsGKSTl~~ll~~-~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++ +|.+..+....+ .....+.....+..|
T Consensus 5 ~i~l~nf~-~y~~~----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~-~~~~~~~~~~~~~~v 78 (213)
T cd03279 5 KLELKNFG-PFREE----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQE-NLRSVFAPGEDTAEV 78 (213)
T ss_pred EEEEECCc-CcCCc----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccch-hHHHHhcCCCccEEE
Confidence 58899987 76543 46777654 599999999999999999999994 666666666543 222233444556779
Q ss_pred eEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 437 GMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 437 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
++++|++.-.. .+..+. ..+.++..+... ++. .++++.+...+.+|||||+||++||||+
T Consensus 79 ~~~f~~~~~~~----~~~r~~--gl~~~~~~~~~~----------l~~----g~l~~~l~~~~~~lS~G~~~r~~la~al 138 (213)
T cd03279 79 SFTFQLGGKKY----RVERSR--GLDYDQFTRIVL----------LPQ----GEFDRFLARPVSTLSGGETFLASLSLAL 138 (213)
T ss_pred EEEEEECCeEE----EEEEec--CCCHHHHHHhhh----------hhh----cchHHHhcCCccccCHHHHHHHHHHHHH
Confidence 99999874221 222222 334443332210 121 1356666777889999999999999999
Q ss_pred cc----------CCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 517 LK----------NAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 517 l~----------~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
+. +|+++||||||++||+.+...+.+.+.++.+ ++|+|+|||+++.+.. ||+++++++|-+
T Consensus 139 ~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 139 ALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 74 6789999999999999999999999988764 7899999999998766 799999998853
No 378
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.95 E-value=1.7e-27 Score=240.75 Aligned_cols=202 Identities=19% Similarity=0.282 Sum_probs=142.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEECCE-eCCCCC--HHHHhc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-YGEILIDGQ-NISNVS--QESLRE 434 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g~-~~~~~~--~~~~r~ 434 (604)
.++++|. .+|.+ ..++.++ ...+++||||||||||||+++|++++.|+ .|+++..|. ++-... ....+.
T Consensus 5 ~~~~~~f-~~~~~-~~~~~~~-----~~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~~~~~~~~~ 77 (251)
T cd03273 5 EIILDGF-KSYAT-RTVISGF-----DPQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKRGQAGITKA 77 (251)
T ss_pred EEEEeCc-cccCc-CEeeccC-----CCCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcCCCCCCcEE
Confidence 4667766 45542 1122122 26799999999999999999999999886 468888776 432111 112345
Q ss_pred cceEEcccCc---------CC-cccHHHHHhcCCC--------CCCHHHHHHHHHHchHH----H------HHHHhhhhh
Q psy13349 435 QIGMVTQDTS---------LL-HRSIRDNILYGRP--------DASECELFNAAKCAEAD----I------FIKSLTDEH 486 (604)
Q Consensus 435 ~i~~v~Q~~~---------lf-~~ti~eNi~~g~~--------~~~~~~i~~a~~~~~~~----~------~i~~lp~~~ 486 (604)
.+++++|++. +. .-||.+|+..+.. ....+++.++++.+++. . -|.++-+
T Consensus 78 ~v~~~fq~~~~~~~~~~~~~~~~ltV~r~I~~~~~~~~~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~-- 155 (251)
T cd03273 78 SVTIVFDNSDKSQSPIGFENYPEITVTRQIVLGGTNKYLINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLN-- 155 (251)
T ss_pred EEEEEEEcCCcccCcccccCCceEEEEEEEEcCCceEEEECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHH--
Confidence 8999999862 22 3488888866431 11234455555554432 0 0111000
Q ss_pred hcCCCccccccCCCCCChhHHHHHHHHHHHc----cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhH
Q psy13349 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVIL----KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLST 562 (604)
Q Consensus 487 ~~~g~~t~v~e~g~~LSgGq~QrialARall----~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~ 562 (604)
...........||||||||++||||+. .+|++++|||||++||+.+...+.+.+++..++.|+|+|||+.+.
T Consensus 156 ----~~~~~~~~~~~lS~G~~qr~~la~al~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~~ 231 (251)
T cd03273 156 ----MGGVWKESLTELSGGQRSLVALSLILALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEGM 231 (251)
T ss_pred ----hHHhhcccccccCHHHHHHHHHHHHHHHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHHH
Confidence 012334566789999999999999997 678999999999999999999999999988778899999999999
Q ss_pred HhhcCeEEEEe
Q psy13349 563 ISAMDRLIVLD 573 (604)
Q Consensus 563 ~~~~d~i~vl~ 573 (604)
++.||+++-+.
T Consensus 232 ~~~~d~v~~~~ 242 (251)
T cd03273 232 FNNANVLFRTR 242 (251)
T ss_pred HHhCCEEEEEE
Confidence 99999998764
No 379
>PF00664 ABC_membrane: ABC transporter transmembrane region; InterPro: IPR001140 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). A variety of ATP-binding transport proteins have a six transmembrane helical region. They are all integral membrane proteins involved in a variety of transport systems. Members of this family include; the cystic fibrosis transmembrane conductance regulator (CFTR), bacterial leukotoxin secretion ATP-binding protein, multidrug resistance proteins, the yeast leptomycin B resistance protein, the mammalian sulphonylurea receptor and antigen peptide transporter 2. Many of these proteins have two such regions.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 3G61_B 3G5U_B 3G60_A 3B60_D 3QF4_B 2HYD_A 2ONJ_A 4A82_B 4AA3_A 2YL4_A.
Probab=99.94 E-value=1e-23 Score=211.82 Aligned_cols=272 Identities=16% Similarity=0.203 Sum_probs=226.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHH
Q psy13349 39 ILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKHQVLSGNFPMLLR 117 (604)
Q Consensus 39 l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr 117 (604)
++.+++++++.+++.++.|++++.++|.+..++..... ....+....++..+. ........+. ......++..++|
T Consensus 1 l~l~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~ 77 (275)
T PF00664_consen 1 LFLAILLSILSGLLSLLFPLLLGQIIDSLSSGNSDNNS--SLISLAFLLIAIFLLIFLFSYIYFYL-SSRISQRIRKDLR 77 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTTSCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchhh--HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 35677888999999999999999999986654432111 111111111111111 2222233222 2345678899999
Q ss_pred HHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 118 WNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYT 197 (604)
Q Consensus 118 ~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l~~~~l~~~~ 197 (604)
.++++|++++|..+|+++++|++.+|+++|++.+++.+...+..++..+..+++.+++++.++|.+++++++..++..++
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~g~l~~~i~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~l~~l~~~~~~~~~ 157 (275)
T PF00664_consen 78 KRLFEKLLRLPYSYFDKNSSGELLSRITNDIEQIENFLSSSLFQIISSIISIIFSLILLFFISWKLALILLIILPLLFLI 157 (275)
T ss_dssp HHHHHHHHHSHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhhhhhhhcccccccccccccccccccccccccccccccchhhhhhhcccccccccccccchhhhhhHhh
Confidence 99999999999999999999999999999999999999988888888888888888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 198 LIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHLLAML 277 (604)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 277 (604)
...+.++.++..++..+..++..+.+.|.++|+++||+||.|+.+.+++++..++..+...+..+.......+..++..+
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (275)
T PF00664_consen 158 SFIFSKKIRKLSKKYQEANSELNSFLSESLSGIRTIKAFGAEDYFLERFNKALEKYRKASFKYAKIQALLSSISQFISYL 237 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhccccccccccccccccccccccccchhhhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888898988888
Q ss_pred HHHHHHHHHHHH-HhhCcccHHHHHHHHHHHHHHHHH
Q psy13349 278 LILGTTGCALFL-WTKGILGIGAVAAATAMSLRLNGI 313 (604)
Q Consensus 278 ~~~~i~~~g~~l-v~~g~lt~G~~~~~~~~~~~l~~~ 313 (604)
..++++++|+++ +.+|.+++|+++++..+...+..|
T Consensus 238 ~~~~~~~~g~~~~~~~g~~s~g~~~~~~~~~~~~~~p 274 (275)
T PF00664_consen 238 SIVLILIFGAYLSVINGQISIGTLVAFLSLSSQLINP 274 (275)
T ss_dssp HHHHHHHHHHHH-HCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHhh
Confidence 888999999999 999999999999999888766554
No 380
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=99.94 E-value=3.6e-27 Score=230.60 Aligned_cols=163 Identities=22% Similarity=0.264 Sum_probs=128.1
Q ss_pred cceEEeCCcEEEEEcCCCCcHHHHHHHHh----cCCCCCccEEEECCEeCCCCCHHHHhccceEEcccC-----cCCcc-
Q psy13349 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLL----RFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDT-----SLLHR- 448 (604)
Q Consensus 379 isl~i~~G~~~~ivG~sGsGKSTl~~ll~----~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~-----~lf~~- 448 (604)
.++++.+| +++|+||||||||||+++|. |...|.+|.+..+...+ .....+..+++++|++ .++..
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i---~~~~~~~~v~~~f~~~~~~~~~v~r~~ 91 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLI---REGEVRAQVKLAFENANGKKYTITRSL 91 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHH---hCCCCcEEEEEEEEeCCCCEEEEEEEh
Confidence 34566677 99999999999999999994 98888888775222112 2234456899999998 44433
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH------HHHHHHHccCCCe
Q psy13349 449 SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR------IAIARVILKNAPI 522 (604)
Q Consensus 449 ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr------ialARall~~p~i 522 (604)
|+.||+.++. ++++. +.+ .+....||+||+|| ++||||+..+|++
T Consensus 92 ~~~~~~~~~~----~~~~~---------~~~----------------~~~~~~LS~G~~~~~~la~rlala~al~~~p~i 142 (204)
T cd03240 92 AILENVIFCH----QGESN---------WPL----------------LDMRGRCSGGEKVLASLIIRLALAETFGSNCGI 142 (204)
T ss_pred hHhhceeeec----hHHHH---------HHH----------------hcCccccCccHHHHHHHHHHHHHHHHhccCCCE
Confidence 8999987642 22221 111 23446899999996 7999999999999
Q ss_pred EEEeccCCCCCHHHHH-HHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 523 LLLDEATSALDSEAEI-AIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 523 lilDE~ts~LD~~~~~-~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
++|||||++||+.+.. .+.+.+++..+ ++|+|+|||+++.+..||++++|++
T Consensus 143 lllDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~~d~i~~l~~ 197 (204)
T cd03240 143 LALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDAADHIYRVEK 197 (204)
T ss_pred EEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhhCCEEEEEee
Confidence 9999999999999999 99999988764 7899999999999989999999964
No 381
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=99.94 E-value=2e-26 Score=246.22 Aligned_cols=216 Identities=26% Similarity=0.403 Sum_probs=171.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH-HHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE-SLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~-~~r~~i~ 437 (604)
.++++|++.. ..++|+||++++||++||.|--|||+|-++.+|.|..++.+|+|.+||+++.--++. ..+..|+
T Consensus 263 ~l~v~~l~~~-----~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~ 337 (500)
T COG1129 263 VLEVRNLSGG-----GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIA 337 (500)
T ss_pred EEEEecCCCC-----CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCE
Confidence 4677777542 258899999999999999999999999999999999999999999999999877754 6888999
Q ss_pred EEcccC---cCC-cccHHHHHhcCCC-CCCHH-HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 438 MVTQDT---SLL-HRSIRDNILYGRP-DASEC-ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 438 ~v~Q~~---~lf-~~ti~eNi~~g~~-~~~~~-~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
|||.|- -+| ..||++|+.+..- ..+.. -+....+....++++..|.- .-.+.+ ..-.+||||-+||+.
T Consensus 338 ~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~I--k~~s~~----~~v~~LSGGNQQKVv 411 (500)
T COG1129 338 YVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRI--KTPSPE----QPIGTLSGGNQQKVV 411 (500)
T ss_pred eCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCc--ccCCcc----chhhcCCchhhhhHH
Confidence 999974 366 4599999988621 11100 12333344445666666521 111222 344589999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhH
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~ 585 (604)
|||.|..+|++|||||||-++|--+..+|++.|+++. +|++||+||-.+..+- .||||+||.+|+|+..=+.++
T Consensus 412 larwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~~ 487 (500)
T COG1129 412 LARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDREE 487 (500)
T ss_pred HHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEecccc
Confidence 9999999999999999999999999999999999886 6899999999998765 699999999999987544433
No 382
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.94 E-value=4.8e-26 Score=273.35 Aligned_cols=213 Identities=23% Similarity=0.317 Sum_probs=153.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHH---------HHhcCCCCCcc--------EEEECC
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINN---------LLLRFYDIKYG--------EILIDG 421 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~---------ll~~~~~~~~G--------~I~i~g 421 (604)
.++++|++. ..|+|+||+|++||+++|+|+||||||||++ .+.|...+..+ -|.||-
T Consensus 600 ~L~l~~~~~------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~idQ 673 (1809)
T PRK00635 600 TLTLSKATK------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHITR 673 (1809)
T ss_pred eEEEecccc------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEecC
Confidence 477777752 3699999999999999999999999999999 55664332111 134444
Q ss_pred EeCCCCC----H------HHHhc---------c-----ceEEccc------------------C----------------
Q psy13349 422 QNISNVS----Q------ESLRE---------Q-----IGMVTQD------------------T---------------- 443 (604)
Q Consensus 422 ~~~~~~~----~------~~~r~---------~-----i~~v~Q~------------------~---------------- 443 (604)
.++..-. . +++|+ . ..+.++. +
T Consensus 674 spigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy~~ 753 (1809)
T PRK00635 674 DLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRFLP 753 (1809)
T ss_pred CCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCcccCH
Confidence 4433211 0 13331 1 1122221 0
Q ss_pred ----cCCcc-cHHHHHhcCCCCC-----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccc-cccCCCCCChhHHHHHHH
Q psy13349 444 ----SLLHR-SIRDNILYGRPDA-----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAH-VGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 444 ----~lf~~-ti~eNi~~g~~~~-----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~-v~e~g~~LSgGq~Qrial 512 (604)
..+.+ ||.||+.++..++ +.+++.+ .++.+. ..|++.. .++...+|||||+||++|
T Consensus 754 e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~---------~l~~L~----~vGL~~l~l~q~~~tLSGGE~QRV~L 820 (1809)
T PRK00635 754 QVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHE---------KIHALC----SLGLDYLPLGRPLSSLSGGEIQRLKL 820 (1809)
T ss_pred HHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHH---------HHHHHH----HcCCcchhhcCccccCCHHHHHHHHH
Confidence 13434 8888888764311 1112211 111111 1378775 788889999999999999
Q ss_pred HHHHc---cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEe------CCEEeEecC
Q psy13349 513 ARVIL---KNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLD------NGCVAEEGS 582 (604)
Q Consensus 513 ARall---~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~------~G~iv~~g~ 582 (604)
||||+ ++|+++||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++|+ +|++++.|+
T Consensus 821 AraL~~~~~~P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i~~aDrVi~L~p~gg~~~G~iv~~Gt 900 (1809)
T PRK00635 821 AYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVVKVADYVLELGPEGGNLGGYLLASCS 900 (1809)
T ss_pred HHHHhhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEccCCCCCCCEEEEeCC
Confidence 99998 6999999999999999999999999998875 5889999999999998899999996 799999999
Q ss_pred hhHHhhcC
Q psy13349 583 HLDLLKKN 590 (604)
Q Consensus 583 ~~~l~~~~ 590 (604)
++++.+..
T Consensus 901 peel~~~~ 908 (1809)
T PRK00635 901 PEELIHLH 908 (1809)
T ss_pred HHHHHhcc
Confidence 99998643
No 383
>cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=99.94 E-value=4.2e-27 Score=231.36 Aligned_cols=184 Identities=20% Similarity=0.234 Sum_probs=134.2
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHh-ccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLR-EQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r-~~i~ 437 (604)
.++++|.- +|.+ ..+++++++ ++++|+|||||||||++++|. .++|.+.. ..| ++++
T Consensus 5 ~l~l~nfk-~~~~-~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~-----~~~~~~i~ 62 (212)
T cd03274 5 KLVLENFK-SYAG-EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRAS-----KMRQKKLS 62 (212)
T ss_pred EEEEECcc-cCCC-CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHH-----HhhhhhHH
Confidence 47788874 6754 569999988 899999999999999999997 33453321 223 5799
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCCCCHHHH--HHH---HH-----HchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPDASECEL--FNA---AK-----CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i--~~a---~~-----~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
+++|+..+++. |.++++.+.......+.+ ... .. ...+ ..+..+|+ +.++. ...||+||
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~v~~~~~-~~~~~L~~-----~~~~~----~~~lS~G~ 132 (212)
T cd03274 63 DLIHNSAGHPNLDSCSVEVHFQEIIDKPLLKSKGIDLDHNRFLILQGEV-EQIAQMPK-----KSWKN----ISNLSGGE 132 (212)
T ss_pred HHhcCCCCCCCCceEEEEEEEEeCCCHHHHHHCCcCCCCCceEEcCCcE-EEeecccc-----ccccc----hhhcCHHH
Confidence 99999887755 777776654321110000 000 00 0000 01223343 44443 45799999
Q ss_pred HHHHHHHHHHcc----CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 507 RQRIAIARVILK----NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 507 ~QrialARall~----~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
|||++||||++. +|++++|||||++||+.+...+.+.+++..++.|+|++||+.+..+.||+|++|..
T Consensus 133 ~~r~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~~~~~~~d~v~~~~~ 204 (212)
T cd03274 133 KTLSSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRNNMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcHHHHHhCCEEEEEEe
Confidence 999999999963 58999999999999999999999999998778899999999988888999999953
No 384
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.94 E-value=7.5e-26 Score=261.78 Aligned_cols=106 Identities=31% Similarity=0.504 Sum_probs=96.2
Q ss_pred CCCcc-ccccCCCCCChhHHHHHHHHHHHccCC---CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH
Q psy13349 489 KGYDA-HVGEHGIKLSGGQRQRIAIARVILKNA---PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI 563 (604)
Q Consensus 489 ~g~~t-~v~e~g~~LSgGq~QrialARall~~p---~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~ 563 (604)
.|++. .+++...+|||||+||++|||+|+++| +++||||||++||+.+...+.+.|+++. +++|+|+|||+++.+
T Consensus 817 vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i 896 (943)
T PRK00349 817 VGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVI 896 (943)
T ss_pred CCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH
Confidence 37765 478888999999999999999999999 9999999999999999999999998875 578999999999999
Q ss_pred hhcCeEEEE------eCCEEeEecChhHHhhcCcHHH
Q psy13349 564 SAMDRLIVL------DNGCVAEEGSHLDLLKKNGLYS 594 (604)
Q Consensus 564 ~~~d~i~vl------~~G~iv~~g~~~~l~~~~~~y~ 594 (604)
+.||+|++| ++|+|++.|+++++.+....|.
T Consensus 897 ~~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s~t 933 (943)
T PRK00349 897 KTADWIIDLGPEGGDGGGEIVATGTPEEVAKVEASYT 933 (943)
T ss_pred HhCCEEEEecCCcCCCCCEEEEeCCHHHHHhCcccHH
Confidence 999999999 7999999999999987664443
No 385
>KOG0927|consensus
Probab=99.93 E-value=8.8e-27 Score=244.83 Aligned_cols=200 Identities=27% Similarity=0.355 Sum_probs=159.3
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..+.++||+|.|+++..++++++|-|..++++|+|||||+|||||+|+++|...|+.|.|.-.- +..++
T Consensus 388 pvi~~~nv~F~y~~~~~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~-----------H~~~~ 456 (614)
T KOG0927|consen 388 PVIMVQNVSFGYSDNPMIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHS-----------HNKLP 456 (614)
T ss_pred CeEEEeccccCCCCcchhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccc-----------cccch
Confidence 4689999999998766799999999999999999999999999999999999999999986433 22455
Q ss_pred EEcccCc---CCcccHHHHHhcCCCC-CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDTS---LLHRSIRDNILYGRPD-ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~~---lf~~ti~eNi~~g~~~-~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
+-.|+.. -++.|.-|++.-.-++ -..+++...+...|+.......| -.+||+|||.|+++|
T Consensus 457 ~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p---------------~~~LS~Gqr~rVlFa 521 (614)
T KOG0927|consen 457 RYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVP---------------MSQLSDGQRRRVLFA 521 (614)
T ss_pred hhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccc---------------hhhcccccchhHHHH
Confidence 5555432 3456777887644443 34556666666555542222111 248999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeE-ecChhH
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAE-EGSHLD 585 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~-~g~~~~ 585 (604)
|..++.|.+|+|||||++||.++-....++|.+. .-++|+|||+...+.+ +++|.+.+||.+.. .|....
T Consensus 522 ~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~~ 593 (614)
T KOG0927|consen 522 RLAVKQPHLLLLDEPTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIEI 593 (614)
T ss_pred HHHhcCCcEEEecCCCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHHH
Confidence 9999999999999999999999999999999876 4599999999999988 79999999998754 555443
No 386
>KOG0065|consensus
Probab=99.92 E-value=5.1e-26 Score=260.67 Aligned_cols=197 Identities=32% Similarity=0.445 Sum_probs=162.7
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhccceEEcccC-cCCcc
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI--KYGEILIDGQNISNVSQESLREQIGMVTQDT-SLLHR 448 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~~ 448 (604)
.+++|+||+=-++||..+||+|+||||||||+++|+|=..- .+|+|.|||.+..+ +..++.+|||.|++ ++-.-
T Consensus 803 ~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~GYvqQ~DiH~~~~ 879 (1391)
T KOG0065|consen 803 TRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVSGYVEQQDIHSPEL 879 (1391)
T ss_pred ceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhccccceeecccccCccc
Confidence 35799999999999999999999999999999999986432 46999999998654 67889999999976 45566
Q ss_pred cHHHHHhcCC----C-CCCHHHH----HHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q psy13349 449 SIRDNILYGR----P-DASECEL----FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN 519 (604)
Q Consensus 449 ti~eNi~~g~----~-~~~~~~i----~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~ 519 (604)
||||-|.|.. | +.+++|- .++.+..+++++ =|..||.-|..||..||+|+.||=-|+.|
T Consensus 880 TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~------------~daiVG~~G~GLs~eQRKrLTIgVELvA~ 947 (1391)
T KOG0065|consen 880 TVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEY------------ADALVGLPGSGLSTEQRKRLTIGVELVAN 947 (1391)
T ss_pred chHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhh------------hhhhccCCCCCCCHHHhceeeEEEEEecC
Confidence 9999998862 2 4454443 333333333221 35678988899999999999999999999
Q ss_pred C-CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhH--HhhcCeEEEEe-CCEEeEecCh
Q psy13349 520 A-PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLST--ISAMDRLIVLD-NGCVAEEGSH 583 (604)
Q Consensus 520 p-~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~--~~~~d~i~vl~-~G~iv~~g~~ 583 (604)
| .||+|||||||||+++...|++.++++. .|+||++.=|.+|. .+..|+++.|+ .|+.|-.|+.
T Consensus 948 P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~l 1016 (1391)
T KOG0065|consen 948 PSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPL 1016 (1391)
T ss_pred CceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCc
Confidence 9 8888999999999999999999999886 69999999999984 68899999996 5788877764
No 387
>cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.92 E-value=1.9e-25 Score=225.23 Aligned_cols=203 Identities=17% Similarity=0.164 Sum_probs=135.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEe-C------CCCCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN-I------SNVSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~-~------~~~~~~~ 431 (604)
.++++|. .+|.+. . ++...+ ..++|+||||||||||+.+|++...+..|++..++.+ + ...+...
T Consensus 3 ~i~l~nf-~~~~~~-~-----~~~~~~-~~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~ 74 (247)
T cd03275 3 RLELENF-KSYKGR-H-----VIGPFD-RFTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNS 74 (247)
T ss_pred EEEEECc-cccCCC-e-----eecCCC-CeEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCce
Confidence 4677776 455421 1 122233 3999999999999999999999998888887654421 1 0111123
Q ss_pred HhccceEEcccCc--CCcccHHHHH-h--cCCCCCCHHHHHHHHHHchHHHHHHH--hhhhhhcCCCccccc--------
Q psy13349 432 LREQIGMVTQDTS--LLHRSIRDNI-L--YGRPDASECELFNAAKCAEADIFIKS--LTDEHGRKGYDAHVG-------- 496 (604)
Q Consensus 432 ~r~~i~~v~Q~~~--lf~~ti~eNi-~--~g~~~~~~~~i~~a~~~~~~~~~i~~--lp~~~~~~g~~t~v~-------- 496 (604)
..-.+.+..|++. ++..+++++- . +.....+.+++.+.++..+++.+... +++ |--+.+.
T Consensus 75 ~~v~~~f~~~~~~~~~~~~~~~~~~~~~~ingk~~s~~~~~~~l~~~gi~~~~~~~~i~Q-----g~v~~i~~~~p~~~~ 149 (247)
T cd03275 75 AYVTAVYEDDDGEEKTFRRIITGGSSSYRINGKVVSLKEYNEELEKINILVKARNFLVFQ-----GDVESIASKNPPGKR 149 (247)
T ss_pred EEEEEEEEcCCCcEEEEEEEEECCceEEEECCEEecHHHHHHHHHHhCCCCCCCeEEEEC-----CchhhhhhccCcchh
Confidence 3334556556532 3444444432 1 11223556666666666665321111 111 1112221
Q ss_pred -cCCCCCChhHHHHHHHHHHHccC----CCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHHhhcCeEE
Q psy13349 497 -EHGIKLSGGQRQRIAIARVILKN----APILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAMDRLI 570 (604)
Q Consensus 497 -e~g~~LSgGq~QrialARall~~----p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~~~~d~i~ 570 (604)
....+||||||||++||||++.+ |+++||||||++||+.+...+.+.|.+..+ +.|+|+|||+.+.++.||+++
T Consensus 150 ~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~~~~~d~i~ 229 (247)
T cd03275 150 FRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEFFSKADALV 229 (247)
T ss_pred hhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHHHhhCCeEE
Confidence 12368999999999999999864 899999999999999999999999998764 789999999999999999999
Q ss_pred EEeC
Q psy13349 571 VLDN 574 (604)
Q Consensus 571 vl~~ 574 (604)
+|..
T Consensus 230 ~~~~ 233 (247)
T cd03275 230 GVYR 233 (247)
T ss_pred EEEe
Confidence 9853
No 388
>COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only]
Probab=99.92 E-value=2.9e-24 Score=225.17 Aligned_cols=217 Identities=24% Similarity=0.381 Sum_probs=174.7
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC-CCCCHHHHh-cc
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI-SNVSQESLR-EQ 435 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~-~~~~~~~~r-~~ 435 (604)
.-++++|++..-..+.+.+++|||++++||++||.|=.|-|-+-|+.+|+|+..|.+|+|.++|.|+ ...++.++| ..
T Consensus 256 ~vL~V~~L~v~~~~~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G 335 (501)
T COG3845 256 VVLEVEDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLG 335 (501)
T ss_pred eEEEEeeeEeecCCCCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcC
Confidence 4589999998654445689999999999999999999999999999999999999999999999997 667777665 56
Q ss_pred ceEEcccCc----CCcccHHHHHhcCCCC---------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 436 IGMVTQDTS----LLHRSIRDNILYGRPD---------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 436 i~~v~Q~~~----lf~~ti~eNi~~g~~~---------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
++|||.|.+ ..+.|+.||+.++.-+ .+..++.+.+ .+.+++.. +...+.++ ...+|
T Consensus 336 ~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a-----~~li~~fd--Vr~~~~~~----~a~~L 404 (501)
T COG3845 336 LAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFA-----RELIEEFD--VRAPSPDA----PARSL 404 (501)
T ss_pred CccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHH-----HHHHHHcC--ccCCCCCc----chhhc
Confidence 999999874 3466999999887532 1223333222 22233221 00112222 34589
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEe
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~ 580 (604)
|||..||+-+||-|.++|++||..+||-+||..+.+.|.+.|.+.+ +|+.|++||-+|+.+ +.||||.||.+|+++..
T Consensus 405 SGGNqQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~ 484 (501)
T COG3845 405 SGGNQQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGI 484 (501)
T ss_pred CCcceehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceecc
Confidence 9999999999999999999999999999999999999999987765 689999999999875 55999999999999987
Q ss_pred cChhH
Q psy13349 581 GSHLD 585 (604)
Q Consensus 581 g~~~~ 585 (604)
.++++
T Consensus 485 ~~~~~ 489 (501)
T COG3845 485 VPPEE 489 (501)
T ss_pred ccccc
Confidence 77665
No 389
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.3e-23 Score=242.83 Aligned_cols=98 Identities=31% Similarity=0.515 Sum_probs=90.2
Q ss_pred CCCcc-ccccCCCCCChhHHHHHHHHHHHcc---CCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH
Q psy13349 489 KGYDA-HVGEHGIKLSGGQRQRIAIARVILK---NAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI 563 (604)
Q Consensus 489 ~g~~t-~v~e~g~~LSgGq~QrialARall~---~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~ 563 (604)
.|++. .+++...+|||||+||++|||+|++ +|+++||||||++||+.+...+.+.|+++. +++|+|+|+|+++.+
T Consensus 815 ~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi~H~~~~i 894 (924)
T TIGR00630 815 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVIEHNLDVI 894 (924)
T ss_pred cCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH
Confidence 47765 4788889999999999999999997 599999999999999999999999998875 589999999999999
Q ss_pred hhcCeEEEE------eCCEEeEecChhHH
Q psy13349 564 SAMDRLIVL------DNGCVAEEGSHLDL 586 (604)
Q Consensus 564 ~~~d~i~vl------~~G~iv~~g~~~~l 586 (604)
+.||+|++| ++|+|++.|+++++
T Consensus 895 ~~aD~ii~Lgp~~G~~gG~iv~~G~~~~l 923 (924)
T TIGR00630 895 KTADYIIDLGPEGGDGGGTIVASGTPEEV 923 (924)
T ss_pred HhCCEEEEecCCccCCCCEEEEeCCHHHh
Confidence 999999999 79999999999886
No 390
>KOG0927|consensus
Probab=99.91 E-value=7.2e-24 Score=223.02 Aligned_cols=228 Identities=22% Similarity=0.301 Sum_probs=152.0
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
...+.++|+|++|.+ .+.++|++|++.+|+++||+|+|||||||+++++.|=..|..-++.+--.+ +++.+..+. -+
T Consensus 73 s~dvk~~sls~s~~g-~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls-~e~~ps~~~-av 149 (614)
T KOG0927|consen 73 SRDVKIESLSLSFHG-VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLS-REIEPSEKQ-AV 149 (614)
T ss_pred cccceeeeeeeccCC-ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhc-ccCCCchHH-HH
Confidence 357999999999975 579999999999999999999999999999999999988876555432110 122221111 01
Q ss_pred eEEc----ccCcCCcccHHHHHhcCCCCCCHHHH---HHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHH
Q psy13349 437 GMVT----QDTSLLHRSIRDNILYGRPDASECEL---FNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQ 508 (604)
Q Consensus 437 ~~v~----Q~~~lf~~ti~eNi~~g~~~~~~~~i---~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~Q 508 (604)
-+|. ++..-. .-..|++.-..++...++. +.-+...+.+.+-.+.-...-..|... .....-.+||||||.
T Consensus 150 ~~v~~~~~~e~~rl-e~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGwrm 228 (614)
T KOG0927|consen 150 QAVVMETDHERKRL-EYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGWRM 228 (614)
T ss_pred HHHhhhhHHHHHHH-HHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchHHH
Confidence 1111 100000 0122333322222122222 111111222111111111001123333 333456799999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCE-EeEecChhHH
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGC-VAEEGSHLDL 586 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~-iv~~g~~~~l 586 (604)
|++|||||+.+|++|+|||||++||.++..-+.+.|.+.... |+++++|.-+++.. |.+|+.|++++ +...|++++.
T Consensus 229 R~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~Gnydqy 307 (614)
T KOG0927|consen 229 RAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYEGNYDQY 307 (614)
T ss_pred HHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeecCCHHHH
Confidence 999999999999999999999999999999999998776322 89999999999977 99999999999 7789999988
Q ss_pred hhc
Q psy13349 587 LKK 589 (604)
Q Consensus 587 ~~~ 589 (604)
...
T Consensus 308 ~~t 310 (614)
T KOG0927|consen 308 VKT 310 (614)
T ss_pred hhH
Confidence 754
No 391
>COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=99.91 E-value=2.3e-24 Score=201.76 Aligned_cols=223 Identities=21% Similarity=0.296 Sum_probs=168.4
Q ss_pred EEEEEEEEEeCC---CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC----CccEEEECCEeCCCCCHHHH
Q psy13349 360 IFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI----KYGEILIDGQNISNVSQESL 432 (604)
Q Consensus 360 i~~~~vsf~y~~---~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~----~~G~I~i~g~~~~~~~~~~~ 432 (604)
+.++|++..+.. ..++.+++|+++..||+-|+||+||||||-++|.++|.... +.-+.++|+.|+-.+++.+.
T Consensus 4 LDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr~R 83 (330)
T COG4170 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred ccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChHHh
Confidence 345566555532 24689999999999999999999999999999999998653 45667788999989998887
Q ss_pred hc----cceEEcccCcCC--cc-cH----HHHHhcCCCC------C--CHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc
Q psy13349 433 RE----QIGMVTQDTSLL--HR-SI----RDNILYGRPD------A--SECELFNAAKCAEADIFIKSLTDEHGRKGYDA 493 (604)
Q Consensus 433 r~----~i~~v~Q~~~lf--~~-ti----~eNi~~g~~~------~--~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t 493 (604)
|+ .|++++|+|.-. +. +| -+||-...-. . ...+-.+.+.++|+.|- ..
T Consensus 84 Rk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdH-------------kD 150 (330)
T COG4170 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDH-------------KD 150 (330)
T ss_pred hhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccH-------------HH
Confidence 75 478999999643 21 33 3444221000 0 11222333444444332 22
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEE
Q psy13349 494 HVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLI 570 (604)
Q Consensus 494 ~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~ 570 (604)
.+..-...|--||.|++.||-|+..+|++||.||||+++|+.|+.+|++.+.+.. ++.|+++++|++.++.. ||+|-
T Consensus 151 IM~SYP~ElTeGE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~ 230 (330)
T COG4170 151 IMRSYPYELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKIN 230 (330)
T ss_pred HHHhCcchhccCcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheE
Confidence 2233345788899999999999999999999999999999999999999998765 47899999999998865 99999
Q ss_pred EEeCCEEeEecChhHHhhc-CcHHHH
Q psy13349 571 VLDNGCVAEEGSHLDLLKK-NGLYSR 595 (604)
Q Consensus 571 vl~~G~iv~~g~~~~l~~~-~~~y~~ 595 (604)
||-.|+-+|.+..+++++. .-.|.+
T Consensus 231 VlYCGQ~~ESa~~e~l~~~PhHPYTq 256 (330)
T COG4170 231 VLYCGQTVESAPSEELVTMPHHPYTQ 256 (330)
T ss_pred EEEecccccccchhHHhcCCCCchHH
Confidence 9999999999999999886 334544
No 392
>KOG0062|consensus
Probab=99.90 E-value=3.1e-23 Score=217.13 Aligned_cols=194 Identities=26% Similarity=0.332 Sum_probs=161.2
Q ss_pred CceEEEEEEEEEeCCCC-ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q psy13349 357 NGKIFFKNVSFSYDQKH-LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~-~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
+..+++.+|+|.|+++. +.+.++++++..-+++++||++|+||||++|++.+-..|..|.+.+.+ |.+
T Consensus 360 ~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~r 428 (582)
T KOG0062|consen 360 PPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLR 428 (582)
T ss_pred CCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------cce
Confidence 35799999999998765 689999999999999999999999999999999999999999988776 568
Q ss_pred ceEEcccCcCC-ccc--HHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCC-CCCChhHHHHHH
Q psy13349 436 IGMVTQDTSLL-HRS--IRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG-IKLSGGQRQRIA 511 (604)
Q Consensus 436 i~~v~Q~~~lf-~~t--i~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g-~~LSgGq~Qria 511 (604)
|+|-.|...=| +-. ..|-+.--.|.-+++|+...+... |++..+.-.. ..||||||-|++
T Consensus 429 i~~f~Qhhvd~l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~----------------Gl~g~la~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 429 IKYFAQHHVDFLDKNVNAVDFMEKSFPGKTEEEIRRHLGSF----------------GLSGELALQSIASLSGGQKSRVA 492 (582)
T ss_pred ecchhHhhhhHHHHHhHHHHHHHHhCCCCCHHHHHHHHHhc----------------CCCchhhhccccccCCcchhHHH
Confidence 99999975422 222 222222223555777877666544 5555555444 579999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEeE
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAE 579 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~ 579 (604)
+|-..+.+|.+|+|||||+.||.++-..+-++|++.. --||+|||+.+.++. |+.+.+.++|++..
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999999998874 479999999999988 89999999999964
No 393
>KOG0066|consensus
Probab=99.90 E-value=2.5e-23 Score=212.73 Aligned_cols=199 Identities=26% Similarity=0.335 Sum_probs=150.1
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..+-+.||+|.|++.+|.+++++|-|.--..+|||||||.|||||+++|.|-++|+.|+.+=+. |-+||
T Consensus 585 PvLGlH~VtFgy~gqkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKnh-----------rL~iG 653 (807)
T KOG0066|consen 585 PVLGLHDVTFGYPGQKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKNH-----------RLRIG 653 (807)
T ss_pred CeeecccccccCCCCCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhccc-----------eeeee
Confidence 3577899999999988999999999999999999999999999999999999999999876432 44799
Q ss_pred EEcccCc--CC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTS--LL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~--lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
+..|... |- ..|-.|-+.-+- +.+.++-..++...|+.. --+|. .-..|||||+-|+++|-
T Consensus 654 ~FdQh~~E~L~~Eetp~EyLqr~F-Nlpyq~ARK~LG~fGL~s------------HAHTi---kikdLSGGQKaRValae 717 (807)
T KOG0066|consen 654 WFDQHANEALNGEETPVEYLQRKF-NLPYQEARKQLGTFGLAS------------HAHTI---KIKDLSGGQKARVALAE 717 (807)
T ss_pred chhhhhHHhhccccCHHHHHHHhc-CCChHHHHHHhhhhhhhh------------ccceE---eeeecCCcchHHHHHHH
Confidence 9888753 22 225555553221 233344344333333321 01221 23579999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhc-CeEEEEeCCEEeE-ecChhH
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAE-EGSHLD 585 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~-d~i~vl~~G~iv~-~g~~~~ 585 (604)
--++.|++|||||||++||.++-..+-++|.++. -.||+|||+-..+... ...+|+++-.|-+ .|.+++
T Consensus 718 Lal~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i~eIdGdFeD 788 (807)
T KOG0066|consen 718 LALGGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGIDEIDGDFED 788 (807)
T ss_pred HhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCChhhccccHHH
Confidence 9999999999999999999999999999998874 4899999999887664 4556666655433 455544
No 394
>KOG0062|consensus
Probab=99.89 E-value=8.3e-24 Score=221.41 Aligned_cols=202 Identities=25% Similarity=0.370 Sum_probs=142.6
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
..+|..+|++.+|++ +.+|++-++++..|..+|+||+||+|||||+++|.. |+|.....+ +++|-.-
T Consensus 78 ~~Di~~~~fdLa~G~-k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve------qE~~g~~ 144 (582)
T KOG0062|consen 78 SKDIHIDNFDLAYGG-KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE------QEVRGDD 144 (582)
T ss_pred ccceeeeeeeeeecc-hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch------hheeccc
Confidence 357999999999975 569999999999999999999999999999999988 544333321 1111110
Q ss_pred eEEcccCcCCcccHHHHHhcCCCCC----CHHHHHH-HHHHchHHHHHHHhhhhhhcCCCccccccC-CCCCChhHHHHH
Q psy13349 437 GMVTQDTSLLHRSIRDNILYGRPDA----SECELFN-AAKCAEADIFIKSLTDEHGRKGYDAHVGEH-GIKLSGGQRQRI 510 (604)
Q Consensus 437 ~~v~Q~~~lf~~ti~eNi~~g~~~~----~~~~i~~-a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~-g~~LSgGq~Qri 510 (604)
....|+ .+-.++-+.-+..-.+.. +.+|+.. ++.-. |+....-++ -..||||=|=|+
T Consensus 145 t~~~~~-~l~~D~~~~dfl~~e~~l~~~~~l~ei~~~~L~gl----------------GFt~emq~~pt~slSGGWrMrl 207 (582)
T KOG0062|consen 145 TEALQS-VLESDTERLDFLAEEKELLAGLTLEEIYDKILAGL----------------GFTPEMQLQPTKSLSGGWRMRL 207 (582)
T ss_pred hHHHhh-hhhccHHHHHHHHhhhhhhccchHHHHHHHHHHhC----------------CCCHHHHhccccccCcchhhHH
Confidence 011111 122334444433221110 2223322 22222 555544433 358999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEE-eEecChhHHhh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCV-AEEGSHLDLLK 588 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i-v~~g~~~~l~~ 588 (604)
|||||++.+||||+|||||+.||..+..-+.+.|... ..|+|+|||+-+++.. |.-|+.+++=|+ .-.|++++..+
T Consensus 208 aLARAlf~~pDlLLLDEPTNhLDv~av~WLe~yL~t~--~~T~liVSHDr~FLn~V~tdIIH~~~~kL~~YkGN~~~Fvk 285 (582)
T KOG0062|consen 208 ALARALFAKPDLLLLDEPTNHLDVVAVAWLENYLQTW--KITSLIVSHDRNFLNTVCTDIIHLENLKLDYYKGNYSQFVK 285 (582)
T ss_pred HHHHHHhcCCCEEeecCCcccchhHHHHHHHHHHhhC--CceEEEEeccHHHHHHHHHHHHHHhhhhhhhhcCcHHHHHH
Confidence 9999999999999999999999999999999988765 3799999999999977 788888877665 35788887765
Q ss_pred cC
Q psy13349 589 KN 590 (604)
Q Consensus 589 ~~ 590 (604)
.+
T Consensus 286 ~k 287 (582)
T KOG0062|consen 286 TK 287 (582)
T ss_pred hh
Confidence 43
No 395
>cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.89 E-value=2.4e-23 Score=202.58 Aligned_cols=172 Identities=20% Similarity=0.208 Sum_probs=117.7
Q ss_pred eeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC-CHHHHhccceEEcccCcCCcccHHHHH
Q psy13349 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV-SQESLREQIGMVTQDTSLLHRSIRDNI 454 (604)
Q Consensus 376 l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~-~~~~~r~~i~~v~Q~~~lf~~ti~eNi 454 (604)
++++++++.+| +.+|+||||||||||+..|.-......+ ....|..+.++ ....-...|.+++|+.-++. |
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~~~~~~~~i~~~~~~~~~~~-----~- 83 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIKDGESSAKITVTLKNQGLDA-----N- 83 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhhCCCCeEEEEEEEEcCCccC-----C-
Confidence 35667777776 7799999999999999998754332221 00112211111 00111345778888766554 2
Q ss_pred hcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH----ccCCCeEEEeccCC
Q psy13349 455 LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI----LKNAPILLLDEATS 530 (604)
Q Consensus 455 ~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal----l~~p~ililDE~ts 530 (604)
+ ..+.+ ...+.+++.. .+ . ..+...+||+|||||++||||+ +.+|+++||||||+
T Consensus 84 ----~-~~~~~------~~~~~~~l~~-~~-----~----~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~ 142 (198)
T cd03276 84 ----P-LCVLS------QDMARSFLTS-NK-----A----AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDV 142 (198)
T ss_pred ----c-CCHHH------HHHHHHHhcc-cc-----c----cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCccc
Confidence 1 11111 1122333332 11 1 2345568999999999999999 68999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhC----CcEEEEEccChhHHhhcCeEEEEeCCE
Q psy13349 531 ALDSEAEIAIQKSLYNLMK----GKTVIAIAHRLSTISAMDRLIVLDNGC 576 (604)
Q Consensus 531 ~LD~~~~~~i~~~i~~~~~----~~t~i~itH~l~~~~~~d~i~vl~~G~ 576 (604)
+||+.+...+.+.|.+..+ ++|++++||+++.+..+|+|-+|..|+
T Consensus 143 glD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~d~v~~~~~~~ 192 (198)
T cd03276 143 FMDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASSDDVKVFRMKD 192 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccccceeEEEecC
Confidence 9999999999999987642 358999999999999999999998754
No 396
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.88 E-value=2.2e-22 Score=207.63 Aligned_cols=178 Identities=26% Similarity=0.374 Sum_probs=135.3
Q ss_pred EEeCCCCceeeecceE-----EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcc
Q psy13349 367 FSYDQKHLIINNLSLT-----IQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQ 441 (604)
Q Consensus 367 f~y~~~~~~l~~isl~-----i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q 441 (604)
++|++-...+.+..|+ |..||+++++||||-||||++++|+|...|++|+ ..+ -.++|=||
T Consensus 343 v~y~~~~k~~g~F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~~----------~~vSyKPQ 408 (591)
T COG1245 343 VEYPDLKKTYGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EED----------LKVSYKPQ 408 (591)
T ss_pred eecchheeecCceEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Ccc----------ceEeecce
Confidence 3444322334455554 5567899999999999999999999999999997 222 16999999
Q ss_pred cCc-CCcccHHHHHhcCCCCC-CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q psy13349 442 DTS-LLHRSIRDNILYGRPDA-SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN 519 (604)
Q Consensus 442 ~~~-lf~~ti~eNi~~g~~~~-~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~ 519 (604)
-.. -|++|+++-+.-..++. .+.-.+ .+.+ .+..++..+...-.+|||||.||+|||-||.++
T Consensus 409 yI~~~~~gtV~~~l~~~~~~~~~~s~~~--------~ei~-------~pl~l~~i~e~~v~~LSGGELQRvaIaa~L~re 473 (591)
T COG1245 409 YISPDYDGTVEDLLRSAIRSAFGSSYFK--------TEIV-------KPLNLEDLLERPVDELSGGELQRVAIAAALSRE 473 (591)
T ss_pred eecCCCCCcHHHHHHHhhhhhcccchhH--------Hhhc-------CccchHHHHhcccccCCchhHHHHHHHHHhccc
Confidence 543 48999998876544321 111110 1111 112555556666678999999999999999999
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEe
Q psy13349 520 APILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLD 573 (604)
Q Consensus 520 p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~ 573 (604)
+|+++||||++.||.+..-.+-+.|++.. .++|.++|-|++-.+.. +||++|++
T Consensus 474 ADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 474 ADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred cCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 99999999999999999988888888865 47899999999999887 79999995
No 397
>cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms. SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression.
Probab=99.86 E-value=1.9e-21 Score=185.88 Aligned_cols=84 Identities=25% Similarity=0.349 Sum_probs=74.9
Q ss_pred HHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc----cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEE
Q psy13349 480 KSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL----KNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVI 554 (604)
Q Consensus 480 ~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall----~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i 554 (604)
.-+|+ |-.|++ |||||+||++|||++. .+|+++|+||||++||+.+...+.+.+.+..+ ++|+|
T Consensus 84 ~~~~~-----~~~~~~------LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiI 152 (178)
T cd03239 84 FLVLQ-----GKVEQI------LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFI 152 (178)
T ss_pred EEecC-----CcCccc------CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEE
Confidence 34566 767766 9999999999999995 79999999999999999999999999988754 58999
Q ss_pred EEccChhHHhhcCeEEEEeC
Q psy13349 555 AIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 555 ~itH~l~~~~~~d~i~vl~~ 574 (604)
++||+.+.++.+|+++.+++
T Consensus 153 iiSH~~~~~~~adrvi~i~~ 172 (178)
T cd03239 153 VITLKKEMFENADKLIGVLF 172 (178)
T ss_pred EEECCHHHHhhCCeEEEEEE
Confidence 99999999999999999975
No 398
>KOG2355|consensus
Probab=99.86 E-value=5.2e-21 Score=178.95 Aligned_cols=210 Identities=23% Similarity=0.312 Sum_probs=154.9
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC-CC-------
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN-VS------- 428 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~-~~------- 428 (604)
+..|++.++.|+|+...|++-|+|+++|+|....+||.||||||||+|+|.|-.-...|.|.+.|.+--. .+
T Consensus 11 ~~aievsgl~f~y~~~dP~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgdl 90 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSDPIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGDL 90 (291)
T ss_pred cceEEEeccEEecccCCceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCce
Confidence 4579999999999887799999999999999999999999999999999999988888999999975422 11
Q ss_pred ---HHHHhccceEEcccCcCC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 429 ---QESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 429 ---~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
-.+|++..++--.-| +- +-++ |.+.+|-...+.++-. .|-+ =+|--+.=+-..+|-
T Consensus 91 ~YLGgeW~~~~~~agevp-lq~D~sa-e~mifgV~g~dp~Rre-------------~LI~-----iLDIdl~WRmHkvSD 150 (291)
T KOG2355|consen 91 SYLGGEWSKTVGIAGEVP-LQGDISA-EHMIFGVGGDDPERRE-------------KLID-----ILDIDLRWRMHKVSD 150 (291)
T ss_pred eEeccccccccccccccc-ccccccH-HHHHhhccCCChhHhh-------------hhhh-----heeccceEEEeeccc
Confidence 123333333333111 11 1122 2333332221111111 1111 122223334467999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEec
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEG 581 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g 581 (604)
|||+|+-|+..|++.=++|+|||.|--||.-.+..+++-+++.. .++||+..||-.+-++. ..+++.+.+|+++..-
T Consensus 151 GqrRRVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~~l 230 (291)
T KOG2355|consen 151 GQRRRVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVDNL 230 (291)
T ss_pred cchhhhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeeecc
Confidence 99999999999999999999999999999999999999998765 48999999999998766 7999999999999854
Q ss_pred ChhHH
Q psy13349 582 SHLDL 586 (604)
Q Consensus 582 ~~~~l 586 (604)
.+++.
T Consensus 231 ~~~~i 235 (291)
T KOG2355|consen 231 KYQKI 235 (291)
T ss_pred ccchh
Confidence 44443
No 399
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=99.85 E-value=6.4e-21 Score=186.17 Aligned_cols=145 Identities=16% Similarity=0.128 Sum_probs=109.1
Q ss_pred eeecceEEeCCc-EEEEEcCCCCcHHHHHHHHh--------cCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCC
Q psy13349 376 INNLSLTIQPGE-KIGLVGRSGAGKSTINNLLL--------RFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLL 446 (604)
Q Consensus 376 l~~isl~i~~G~-~~~ivG~sGsGKSTl~~ll~--------~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf 446 (604)
.-++||++++|+ +++|+||||||||||++.+. |.+-|....+ .++|+.|.-.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~~-----------------~~~~~~~~~~-- 77 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEGS-----------------SLPVFENIFA-- 77 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCccccccc-----------------cCcCccEEEE--
Confidence 457899999996 69999999999999999998 5554432111 2333333311
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEe
Q psy13349 447 HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526 (604)
Q Consensus 447 ~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililD 526 (604)
.+ |.+..+.++-.++|+|+||+..+++++ .+|+++++|
T Consensus 78 --------~l---------------------------------g~~~~l~~~~s~fs~g~~~~~~i~~~~-~~p~llllD 115 (200)
T cd03280 78 --------DI---------------------------------GDEQSIEQSLSTFSSHMKNIARILQHA-DPDSLVLLD 115 (200)
T ss_pred --------ec---------------------------------CchhhhhcCcchHHHHHHHHHHHHHhC-CCCcEEEEc
Confidence 01 111112222357999999999999985 899999999
Q ss_pred ccCCCCCHHHHHHHHH-HHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEec
Q psy13349 527 EATSALDSEAEIAIQK-SLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 527 E~ts~LD~~~~~~i~~-~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g 581 (604)
|||+++|+.+...+.. .++++. .+.|+|++||+.+..+.||++.+|++|+++..+
T Consensus 116 Ep~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~~l~~~~d~~~~l~~g~l~~~~ 172 (200)
T cd03280 116 ELGSGTDPVEGAALAIAILEELLERGALVIATTHYGELKAYAYKREGVENASMEFDP 172 (200)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHHHHHHHHhcCCCeEEEEEEEec
Confidence 9999999999988864 455554 478999999998777889999999999998664
No 400
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.84 E-value=3.5e-20 Score=203.31 Aligned_cols=109 Identities=30% Similarity=0.494 Sum_probs=97.9
Q ss_pred CCCcc-ccccCCCCCChhHHHHHHHHHHHccCC---CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH
Q psy13349 489 KGYDA-HVGEHGIKLSGGQRQRIAIARVILKNA---PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI 563 (604)
Q Consensus 489 ~g~~t-~v~e~g~~LSgGq~QrialARall~~p---~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~ 563 (604)
.|+.. .+|+...+|||||.|||-||.-|.+.. -++||||||.+|-.+..+++++.|.++- +|.|||+|-|.|+.+
T Consensus 809 VGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVIEHNLdVI 888 (935)
T COG0178 809 VGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIEHNLDVI 888 (935)
T ss_pred cCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecccceE
Confidence 35554 578999999999999999999999987 7999999999999999999999998876 689999999999999
Q ss_pred hhcCeEEEE------eCCEEeEecChhHHhhcCcHHHHHH
Q psy13349 564 SAMDRLIVL------DNGCVAEEGSHLDLLKKNGLYSRLW 597 (604)
Q Consensus 564 ~~~d~i~vl------~~G~iv~~g~~~~l~~~~~~y~~l~ 597 (604)
+.||.|+-| +.|+||.+|+|+|+.+..+.|..-|
T Consensus 889 k~AD~IIDLGPeGG~~GG~iva~GTPeeva~~~~S~Tg~y 928 (935)
T COG0178 889 KTADWIIDLGPEGGDGGGEIVASGTPEEVAKVKASYTGKY 928 (935)
T ss_pred eecCEEEEcCCCCCCCCceEEEecCHHHHHhCccchhHHH
Confidence 999999999 5689999999999998766665544
No 401
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=99.83 E-value=1.6e-20 Score=188.09 Aligned_cols=197 Identities=17% Similarity=0.222 Sum_probs=137.3
Q ss_pred ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE--EECCEeCCCCCHHHHhccc---eEEcccCcCCcccHHHHH
Q psy13349 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI--LIDGQNISNVSQESLREQI---GMVTQDTSLLHRSIRDNI 454 (604)
Q Consensus 380 sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I--~i~g~~~~~~~~~~~r~~i---~~v~Q~~~lf~~ti~eNi 454 (604)
=+.+.+||+++|+||+|+|||||++.+.+..+...+++ .+....-+..+..++.+.+ -++.+- +.+-...+
T Consensus 10 ~~~i~~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~----~~~~~~~~ 85 (249)
T cd01128 10 FAPIGKGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTF----DEPPERHV 85 (249)
T ss_pred ecccCCCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecC----CCCHHHHH
Confidence 35688999999999999999999999999887764332 2222222224455554444 111110 00111111
Q ss_pred hcCCCCCCHHHHHHHHH---Hch-----HHHHHHHhhhhhhcCCCccccccCCCCCChhH--------HHHHHHHHHHcc
Q psy13349 455 LYGRPDASECELFNAAK---CAE-----ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ--------RQRIAIARVILK 518 (604)
Q Consensus 455 ~~g~~~~~~~~i~~a~~---~~~-----~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq--------~QrialARall~ 518 (604)
... ....+.++ ..| +-|-+.++|+ ++++..++.|..+|||| +||+++||++++
T Consensus 86 ~~~------~~~~~~a~~~~~~G~~vll~iDei~r~a~-----a~~ev~~~~G~~~sgG~~~~~~~~~~q~~~~Ar~~~~ 154 (249)
T cd01128 86 QVA------EMVLEKAKRLVEHGKDVVILLDSITRLAR-----AYNTVVPPSGKILSGGVDANALHKPKRFFGAARNIEE 154 (249)
T ss_pred HHH------HHHHHHHHHHHHCCCCEEEEEECHHHhhh-----hhhhccccCCCCCCCCcChhhhhhhHHHHHHhcCCCC
Confidence 000 01111111 001 1123556776 99999999999999999 999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHH-HHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHH
Q psy13349 519 NAPILLLDEATSALDSEAEIA-IQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~-i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l 596 (604)
+++|.+| ||+.+|+.++.. ++ +.+.. .++|.|++||++....++|.|.||++|++ |++++..++.|+.+
T Consensus 155 ~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~~~~paI~vl~s~sr-----~~~ll~~~~~~~~~ 225 (249)
T cd01128 155 GGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAERRIFPAIDILKSGTR-----KEELLLDPEELQRM 225 (249)
T ss_pred CCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhCCCCCeEEEcCCCCc-----cchhhCCHHHHHHH
Confidence 9999999 999999866654 43 34444 57899999999999999999999999997 78899888889888
Q ss_pred HHHh
Q psy13349 597 WRHQ 600 (604)
Q Consensus 597 ~~~q 600 (604)
++.+
T Consensus 226 ~~~r 229 (249)
T cd01128 226 WLLR 229 (249)
T ss_pred HHHH
Confidence 7644
No 402
>KOG0065|consensus
Probab=99.83 E-value=1.3e-20 Score=216.59 Aligned_cols=202 Identities=26% Similarity=0.422 Sum_probs=167.2
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK---YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR- 448 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~- 448 (604)
.++|+|+|.-++||+.+.+.||.|||||||++.++|-.+-. .|+|..||.+.+++.+ ++.++|++|+..-|+.
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~~---~~~~aY~~e~DvH~p~l 204 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFVP---KKTVAYNSEQDVHFPEL 204 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCccccccc---CceEEecccccccccee
Confidence 36899999999999999999999999999999999987642 4799999999988766 7789999998887755
Q ss_pred cHHHHHhcCC----C-----CCCHHHHHHHHHHchHHHHHH---HhhhhhhcCCCccccccC-CCCCChhHHHHHHHHHH
Q psy13349 449 SIRDNILYGR----P-----DASECELFNAAKCAEADIFIK---SLTDEHGRKGYDAHVGEH-GIKLSGGQRQRIAIARV 515 (604)
Q Consensus 449 ti~eNi~~g~----~-----~~~~~~i~~a~~~~~~~~~i~---~lp~~~~~~g~~t~v~e~-g~~LSgGq~QrialARa 515 (604)
|+||-|-|.. | +.++.|-.+ ...|.+. .|.. ..||.||.+ ....|||||.|+.+|-+
T Consensus 205 TVreTldFa~rck~~~~r~~~~~R~e~~~-----~~~d~~lkilGL~~-----~~dT~VGnd~~RGvSGGerKRvsi~E~ 274 (1391)
T KOG0065|consen 205 TVRETLDFAARCKGPGSRYDEVSRREKLA-----AMTDYLLKILGLDH-----CADTLVGNDMVRGVSGGERKRVSIGEM 274 (1391)
T ss_pred EEeehhhHHHhccCCccccccccHHHHHH-----HHHHHHHHHhCchh-----hccceecccccccccCcccceeeeeee
Confidence 9999998753 2 122222221 1222222 2333 789999975 45899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChh--HHhhcCeEEEEeCCEEeEecChhHHh
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLS--TISAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~--~~~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
++.+|+++.+||+|.|||..|.-++.+++++..+ +.|.++.=|..+ +....|+|.+|.+|+++-+|+.++.+
T Consensus 275 ~v~~~~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp~d~~~ 350 (1391)
T KOG0065|consen 275 LVGPASILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGPRDEVL 350 (1391)
T ss_pred eecCcceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEeccHHHHH
Confidence 9999999999999999999999999999988763 678777778764 57789999999999999999988876
No 403
>cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.83 E-value=4.7e-20 Score=188.99 Aligned_cols=76 Identities=24% Similarity=0.394 Sum_probs=70.4
Q ss_pred CCChhHHHHHHHHHHHcc----CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCE
Q psy13349 501 KLSGGQRQRIAIARVILK----NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGC 576 (604)
Q Consensus 501 ~LSgGq~QrialARall~----~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~ 576 (604)
.|||||+||+++||+++. +|++++|||||++||+.+...+.+.+.+..+++|+|+|||+++..+.||+++++++|.
T Consensus 170 ~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~~~~~d~~~~l~~~~ 249 (276)
T cd03241 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQVAAMADNHFLVEKEV 249 (276)
T ss_pred hcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHHHHhcCcEEEEEEec
Confidence 599999999999997653 9999999999999999999999999998877889999999999888899999998874
No 404
>cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for
Probab=99.83 E-value=2.6e-20 Score=183.19 Aligned_cols=180 Identities=17% Similarity=0.166 Sum_probs=111.0
Q ss_pred eecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hc-----cceEEcccCcCCccc-
Q psy13349 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL-RE-----QIGMVTQDTSLLHRS- 449 (604)
Q Consensus 377 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~-r~-----~i~~v~Q~~~lf~~t- 449 (604)
+++.++..+| ..+|+||||||||||+..|.-..-...... ... -...++ +. .|-...+.. +..
T Consensus 15 ~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~-----~~~~~~i~~g~~~~~v~~~~~~~---~~~~ 84 (213)
T cd03277 15 DETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRA-----KKVGEFVKRGCDEGTIEIELYGN---PGNI 84 (213)
T ss_pred ceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccc-----cCHHHHhhCCCCcEEEEEEEEeC---CCcc
Confidence 3455555444 568999999999999998866553221110 000 011111 11 011111110 001
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH----HccCCCeEEE
Q psy13349 450 IRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV----ILKNAPILLL 525 (604)
Q Consensus 450 i~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa----ll~~p~ilil 525 (604)
..+|+.+. .+.+.+.+++..... +.+..+|. +.+. -..+...||||||||+++|++ ++.+|+++++
T Consensus 85 ~~~n~~~~---~~q~~~~~~~~~~~~-e~l~~~~~-----~~~~-~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llll 154 (213)
T cd03277 85 QVDNLCQF---LPQDRVGEFAKLSPI-ELLVKFRE-----GEQL-QELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVV 154 (213)
T ss_pred ccCCceEE---EchHHHHHHHhCChH-hHheeeec-----CCCc-cccchhhccccHHHHHHHHHHHHHHhccCCCEEEE
Confidence 23444321 244555555555544 44444543 3332 244667999999999887754 4689999999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHhC--C-cEEEEEccChhH-HhhcC--eEEEEeCCE
Q psy13349 526 DEATSALDSEAEIAIQKSLYNLMK--G-KTVIAIAHRLST-ISAMD--RLIVLDNGC 576 (604)
Q Consensus 526 DE~ts~LD~~~~~~i~~~i~~~~~--~-~t~i~itH~l~~-~~~~d--~i~vl~~G~ 576 (604)
||||++||+.+...+.+.+.+..+ + .|+|++||++.. .+.+| +|+++++|+
T Consensus 155 DEP~~~LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~ 211 (213)
T cd03277 155 DEINQGMDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGP 211 (213)
T ss_pred ecccccCCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCc
Confidence 999999999999999999987753 3 479999999854 44455 788888775
No 405
>PRK00635 excinuclease ABC subunit A; Provisional
Probab=99.82 E-value=8.6e-20 Score=219.94 Aligned_cols=215 Identities=21% Similarity=0.254 Sum_probs=147.1
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh------cC---CCCCccEEEECCEeCCCCC----------HHHHhcc
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL------RF---YDIKYGEILIDGQNISNVS----------QESLREQ 435 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~------~~---~~~~~G~I~i~g~~~~~~~----------~~~~r~~ 435 (604)
=|+|++.+||-|..+++.|-||||||||++=.+ .+ .+.-+--|.||-.++..-+ .+.+|+-
T Consensus 1505 NLk~v~v~iPlg~l~~vTGVSGSGKStLi~~~l~~~l~~~l~~g~~~~~~vi~vdQspIgrt~RS~paTY~g~fd~IR~l 1584 (1809)
T PRK00635 1505 TIQNLNVSAPLHSLVAISGVSGSGKTSLLLEGFYKQACALIEKGPSVFSEIIFLDSHPQISSQRSDISTYFDIAPSLRNF 1584 (1809)
T ss_pred cCCcceeeccCCcEEEEeCCCCCcHHHHHHHHHHHHHHHHhcccccccCcEEEEeCCCCCCCCCCchhhhhhhHHHHHHH
Confidence 389999999999999999999999999996443 11 1233445778877764321 1455655
Q ss_pred ceEEcc------cCcCCccc--------------HHHHHhcCCCC------------CCH------------HH-----H
Q psy13349 436 IGMVTQ------DTSLLHRS--------------IRDNILYGRPD------------ASE------------CE-----L 466 (604)
Q Consensus 436 i~~v~Q------~~~lf~~t--------------i~eNi~~g~~~------------~~~------------~~-----i 466 (604)
++-.|+ .+..|+-. +.=++.|- |+ ..+ .| +
T Consensus 1585 FA~~~~ak~rg~~~~~FSfN~~~GrC~~C~G~G~i~i~m~fl-~dv~~~C~~C~G~R~~~e~L~v~~~gk~I~dvL~mtv 1663 (1809)
T PRK00635 1585 YASLTQAKALNISASMFSTNTKQGQCSDCWGLGYQWIDRAFY-ALEKRPCPTCSGFRIQPLAQEVVYEGKHFGQLLQTPI 1663 (1809)
T ss_pred HhcCHHHHHcCCCcccccccCCCCCCCCCccCceEEEecccC-CCcccCCCCCCCcCCCHHHHhheeCCCCHHHHhcCCH
Confidence 554333 12222211 11111110 10 000 00 1
Q ss_pred HHHHHH----chHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHHHHHHHHccC---CCeEEEeccCCCCCHHHHH
Q psy13349 467 FNAAKC----AEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRIAIARVILKN---APILLLDEATSALDSEAEI 538 (604)
Q Consensus 467 ~~a~~~----~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~QrialARall~~---p~ililDE~ts~LD~~~~~ 538 (604)
.+|++- ..+...+..|- ..|+.. .+|+...+|||||.|||-||.-|.++ +.++||||||.+|++...+
T Consensus 1664 ~ea~~~F~~~~~i~~~L~~L~----~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~ 1739 (1809)
T PRK00635 1664 EEVAETFPFLKKIQKPLQALI----DNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKS 1739 (1809)
T ss_pred HHHHHHhhccHHHHHHHHHHH----HcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHH
Confidence 111111 01111222222 235555 47899999999999999999999976 6899999999999999999
Q ss_pred HHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEE------eCCEEeEecChhHHhhcCcHHH
Q psy13349 539 AIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVL------DNGCVAEEGSHLDLLKKNGLYS 594 (604)
Q Consensus 539 ~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~~~~y~ 594 (604)
++++.++++. .+.|+|+|.|+++.++.||.|+-| +.|+||.+|+++|+.+....|.
T Consensus 1740 ~Ll~~l~~L~~~g~tvivieH~~~~i~~aD~iidlgp~gG~~GG~iva~Gtp~~i~~~~~S~t 1802 (1809)
T PRK00635 1740 ALLVQLRTLVSLGHSVIYIDHDPALLKQADYLIEMGPGSGKTGGKILFSGPPKDISASKDSLL 1802 (1809)
T ss_pred HHHHHHHHHHhcCCeEEEEeCCHHHHHhCCEEEEcCCCcccCCCEEEEEeCHHHHhhCCCCcH
Confidence 9999998875 689999999999999999999999 4689999999999998654443
No 406
>COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only]
Probab=99.80 E-value=3.8e-19 Score=181.80 Aligned_cols=178 Identities=25% Similarity=0.417 Sum_probs=135.8
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC--------CCCCccEEEECCEeCCCCCHHHHhccceEEcc--cC
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--------YDIKYGEILIDGQNISNVSQESLREQIGMVTQ--DT 443 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~--------~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q--~~ 443 (604)
.+|+|+||+|++|+.++++|+|||||||++++++|. |.|++|.|.+--..+ -+.+|- +|
T Consensus 397 yvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt~-----------~a~iPge~Ep 465 (593)
T COG2401 397 YVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTV-----------SALIPGEYEP 465 (593)
T ss_pred eeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccch-----------hhccCccccc
Confidence 689999999999999999999999999999999996 789999998743222 223443 33
Q ss_pred cCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeE
Q psy13349 444 SLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523 (604)
Q Consensus 444 ~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~il 523 (604)
.+=.-|+.|.+.-- + -+-..-.+.++.+|+.|-+. + -..-..||-|||-|..||+++...|.++
T Consensus 466 ~f~~~tilehl~s~-t-GD~~~AveILnraGlsDAvl----------y----Rr~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 466 EFGEVTILEHLRSK-T-GDLNAAVEILNRAGLSDAVL----------Y----RRKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred ccCchhHHHHHhhc-c-CchhHHHHHHHhhccchhhh----------h----hccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 33333888877531 1 11112234455555544221 1 1233579999999999999999999999
Q ss_pred EEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh--cCeEEEEeCCEEe
Q psy13349 524 LLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA--MDRLIVLDNGCVA 578 (604)
Q Consensus 524 ilDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~--~d~i~vl~~G~iv 578 (604)
+.||..|.||+.|...+...|.++. .+.|.++||||.+.... -|.++.+.=|+..
T Consensus 530 ~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~ 588 (593)
T COG2401 530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVP 588 (593)
T ss_pred EhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeeccccc
Confidence 9999999999999999999998876 58999999999998876 4999888766654
No 407
>COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only]
Probab=99.80 E-value=1.1e-19 Score=187.84 Aligned_cols=188 Identities=25% Similarity=0.396 Sum_probs=133.7
Q ss_pred EEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCE-------------eCCCCCHH
Q psy13349 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ-------------NISNVSQE 430 (604)
Q Consensus 364 ~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~-------------~~~~~~~~ 430 (604)
++.-+|+.+.-.|..+- ..++|+.+||+|+||-||||-+|+|+|...|+=|+- ++. ++.++=.+
T Consensus 79 e~vHRYg~NgFkL~~LP-~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~--~~pp~wdeVi~~FrGtELq~YF~~ 155 (591)
T COG1245 79 EVVHRYGVNGFKLYRLP-TPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRY--EDPPSWDEVIKRFRGTELQNYFKK 155 (591)
T ss_pred cceeeccCCceEEecCC-CCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCC--CCCCCHHHHHHHhhhhHHHHHHHH
Confidence 45567765433343333 246899999999999999999999999999997764 331 11110000
Q ss_pred ----HHh--ccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 431 ----SLR--EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 431 ----~~r--~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
++| .++-||.-=|-.+.|+++|-+.-. -+.-..++.++.| +++..++.+...|||
T Consensus 156 l~~g~~r~v~K~QYVd~iPk~~KG~v~elLk~~------------de~g~~devve~l-------~L~nvl~r~v~~LSG 216 (591)
T COG1245 156 LYEGELRAVHKPQYVDLIPKVVKGKVGELLKKV------------DERGKFDEVVERL-------GLENVLDRDVSELSG 216 (591)
T ss_pred HHcCCcceecchHHHHHHHHHhcchHHHHHHhh------------hhcCcHHHHHHHh-------cchhhhhhhhhhcCc
Confidence 000 011122222334445554444321 1112345555555 778888888899999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHHhh-cCeEEEEe
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA-MDRLIVLD 573 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~~~-~d~i~vl~ 573 (604)
||-||+|||-|++++++++++|||||-||....-..-+.|+++.+ ++++++|-|+|..+.. +|-|.++-
T Consensus 217 GELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~vhI~Y 287 (591)
T COG1245 217 GELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDFVHILY 287 (591)
T ss_pred hHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhheeEEEe
Confidence 999999999999999999999999999999999999999999886 6999999999999987 79988884
No 408
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=99.79 E-value=3.2e-19 Score=168.23 Aligned_cols=135 Identities=26% Similarity=0.378 Sum_probs=99.9
Q ss_pred ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce-EEcccCcCCcccHHHHHhcCC
Q psy13349 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG-MVTQDTSLLHRSIRDNILYGR 458 (604)
Q Consensus 380 sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti~eNi~~g~ 458 (604)
+..+.+|..+.|+|||||||||+++.+.-..-..+|.+.... +. +.+ .+++...-|
T Consensus 15 ~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~~----------~~g~~~~~~~~~~------------ 71 (162)
T cd03227 15 DVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-GV----------KAGCIVAAVSAEL------------ 71 (162)
T ss_pred EEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-cc----------cCCCcceeeEEEE------------
Confidence 344455679999999999999999997766655555443310 00 011 111111111
Q ss_pred CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc----CCCeEEEeccCCCCCH
Q psy13349 459 PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK----NAPILLLDEATSALDS 534 (604)
Q Consensus 459 ~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~----~p~ililDE~ts~LD~ 534 (604)
+. +. .+||+||+||+++||+|.. +|+++++|||++++|+
T Consensus 72 --------------------i~------------~~-----~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~gld~ 114 (162)
T cd03227 72 --------------------IF------------TR-----LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDP 114 (162)
T ss_pred --------------------eh------------he-----eeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCCCCCH
Confidence 00 00 1299999999999999987 7899999999999999
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 535 EAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 535 ~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
.....+.+.+.+.. +++|+|++||+.+..+.+|+++.|+.
T Consensus 115 ~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~~~d~~~~l~~ 155 (162)
T cd03227 115 RDGQALAEAILEHLVKGAQVIVITHLPELAELADKLIHIKK 155 (162)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhhhhEEEEEE
Confidence 99999999987764 35899999999999999999999964
No 409
>cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.77 E-value=1e-18 Score=173.03 Aligned_cols=153 Identities=20% Similarity=0.134 Sum_probs=112.7
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce-EEcccCcCCcccH
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG-MVTQDTSLLHRSI 450 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti 450 (604)
.+.+.+|+++++++|++++|.|||||||||+++.++- -.+..++| +||.+...+. +
T Consensus 16 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~---------------------~~~la~~g~~vpa~~~~~~--~ 72 (222)
T cd03285 16 VAFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGV---------------------IVLMAQIGCFVPCDSADIP--I 72 (222)
T ss_pred CCeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHH---------------------HHHHHHhCCCcCcccEEEe--c
Confidence 3468999999999999999999999999999999982 12334555 6776643221 1
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH--ccCCCeEEEecc
Q psy13349 451 RDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI--LKNAPILLLDEA 528 (604)
Q Consensus 451 ~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal--l~~p~ililDE~ 528 (604)
.+.+. ... |++... ...+|.|++|+..+++++ +.+|+++|||||
T Consensus 73 ~~~il---------------~~~----------------~l~d~~---~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp 118 (222)
T cd03285 73 VDCIL---------------ARV----------------GASDSQ---LKGVSTFMAEMLETAAILKSATENSLIIIDEL 118 (222)
T ss_pred cceeE---------------eee----------------ccccch---hcCcChHHHHHHHHHHHHHhCCCCeEEEEecC
Confidence 11110 111 221111 247999999999999999 999999999999
Q ss_pred ---CCCCCHHHHHHHH-HHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecC
Q psy13349 529 ---TSALDSEAEIAIQ-KSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 529 ---ts~LD~~~~~~i~-~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~ 582 (604)
|+++|+....... +.+.+ ..++|++++||..+..+.||++..+++|++...++
T Consensus 119 ~~gT~~lD~~~~~~~il~~l~~-~~~~~vlisTH~~el~~~~~~~~~i~~g~~~~~~~ 175 (222)
T cd03285 119 GRGTSTYDGFGLAWAIAEYIAT-QIKCFCLFATHFHELTALADEVPNVKNLHVTALTD 175 (222)
T ss_pred cCCCChHHHHHHHHHHHHHHHh-cCCCeEEEEechHHHHHHhhcCCCeEEEEEEEEEe
Confidence 9999998775443 55543 24789999999766667799999999999976653
No 410
>cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage. When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=99.75 E-value=1.3e-17 Score=170.35 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=61.6
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-c---
Q psy13349 500 IKLSGGQRQRIAIARVIL---------KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-M--- 566 (604)
Q Consensus 500 ~~LSgGq~QrialARall---------~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~--- 566 (604)
..+|+||+|++++||++. .+|++++|||||++||+.....+.+.+.+.. .+++++|+...+.. |
T Consensus 182 ~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~~~ 258 (270)
T cd03242 182 DFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWLRR 258 (270)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhccC
Confidence 357999999999999974 7999999999999999999999999997652 45555555544433 5
Q ss_pred CeEEEEeCCEE
Q psy13349 567 DRLIVLDNGCV 577 (604)
Q Consensus 567 d~i~vl~~G~i 577 (604)
++|+.+++|++
T Consensus 259 ~~i~~l~~g~i 269 (270)
T cd03242 259 AQIFRVDAGTL 269 (270)
T ss_pred ccEEEEeCcEE
Confidence 78999999986
No 411
>TIGR00630 uvra excinuclease ABC, A subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.73 E-value=1.8e-17 Score=192.08 Aligned_cols=100 Identities=31% Similarity=0.417 Sum_probs=91.6
Q ss_pred CCccc-cccCCCCCChhHHHHHHHHHHHccCC--CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh
Q psy13349 490 GYDAH-VGEHGIKLSGGQRQRIAIARVILKNA--PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA 565 (604)
Q Consensus 490 g~~t~-v~e~g~~LSgGq~QrialARall~~p--~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~ 565 (604)
|++.. ++....+|||||+||++|||||..+| +++||||||++||+.+.+.+.+.|+++. +++|+|+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 67654 67778899999999999999999986 8999999999999999999999998875 48899999999999999
Q ss_pred cCeEEEE------eCCEEeEecChhHHhhc
Q psy13349 566 MDRLIVL------DNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 566 ~d~i~vl------~~G~iv~~g~~~~l~~~ 589 (604)
||+|++| ++|+|+++|+++++.+.
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~~ 584 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILAN 584 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhcC
Confidence 9999999 99999999999998643
No 412
>PRK00349 uvrA excinuclease ABC subunit A; Reviewed
Probab=99.73 E-value=1.8e-17 Score=192.44 Aligned_cols=101 Identities=29% Similarity=0.414 Sum_probs=92.6
Q ss_pred CCCccc-cccCCCCCChhHHHHHHHHHHHccCC--CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh
Q psy13349 489 KGYDAH-VGEHGIKLSGGQRQRIAIARVILKNA--PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS 564 (604)
Q Consensus 489 ~g~~t~-v~e~g~~LSgGq~QrialARall~~p--~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~ 564 (604)
.|++.. .+....+|||||+||++|||||..+| +++||||||++||+.....+.+.|+++. +++|+|+|+|+++.+.
T Consensus 476 vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~~~~i~ 555 (943)
T PRK00349 476 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHDEDTIR 555 (943)
T ss_pred cccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 477654 67778899999999999999999997 8999999999999999999999999876 4899999999999999
Q ss_pred hcCeEEEE------eCCEEeEecChhHHhhc
Q psy13349 565 AMDRLIVL------DNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 565 ~~d~i~vl------~~G~iv~~g~~~~l~~~ 589 (604)
.||+|++| ++|+|+.+|+++++.+.
T Consensus 556 ~aD~vi~LgpgaG~~~G~iv~~g~~~e~~~~ 586 (943)
T PRK00349 556 AADYIVDIGPGAGVHGGEVVASGTPEEIMKN 586 (943)
T ss_pred hCCEEEEeccccCCCCCEEeeccCHHHHhcC
Confidence 99999999 99999999999998654
No 413
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=99.73 E-value=1.7e-17 Score=162.20 Aligned_cols=153 Identities=15% Similarity=0.124 Sum_probs=103.3
Q ss_pred cceEEeCCcEEEEEcCCCCcHHHHHHHHhcC-CCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcC
Q psy13349 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRF-YDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG 457 (604)
Q Consensus 379 isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~-~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g 457 (604)
.++++.+|++++|+||||||||||++++.+. +.+..|...- + .+..+++..|....|. ..+
T Consensus 22 ~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~-~----------~~~~i~~~dqi~~~~~--~~d----- 83 (202)
T cd03243 22 NDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVP-A----------ESASIPLVDRIFTRIG--AED----- 83 (202)
T ss_pred eeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCcc-c----------cccccCCcCEEEEEec--Ccc-----
Confidence 4555668999999999999999999999943 2222222110 0 0112333222211110 000
Q ss_pred CCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHH
Q psy13349 458 RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537 (604)
Q Consensus 458 ~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~ 537 (604)
.+.++-..+|++++| +..+.++..+|+++|+||||+++|+...
T Consensus 84 ------------------------------------~i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~~~~ 126 (202)
T cd03243 84 ------------------------------------SISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTSTAEG 126 (202)
T ss_pred ------------------------------------cccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCHHHH
Confidence 111222345666655 7777788899999999999999999988
Q ss_pred HHHHHH-HHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHH
Q psy13349 538 IAIQKS-LYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 538 ~~i~~~-i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 586 (604)
..+... ++... .+.++|++||+.+..+.+|++..+++|++.++++..++
T Consensus 127 ~~l~~~ll~~l~~~~~~vi~~tH~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 177 (202)
T cd03243 127 LAIAYAVLEHLLEKGCRTLFATHFHELADLPEQVPGVKNLHMEELITTGGL 177 (202)
T ss_pred HHHHHHHHHHHHhcCCeEEEECChHHHHHHhhcCCCeEEEEEEEEecCCee
Confidence 777554 44433 47899999999999999999999999999988865444
No 414
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=99.71 E-value=2.3e-17 Score=160.69 Aligned_cols=144 Identities=17% Similarity=0.146 Sum_probs=98.0
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIR 451 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 451 (604)
+++++|++++. |++++|+||||||||||++++++... +..+|.++... .+++|...+|.. |++
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a~---------~~~~q~~~l~~~~~~~ 77 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCAS---------SFELPPVKIFTSIRVS 77 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEecC---------ccCcccceEEEeccch
Confidence 45778777665 79999999999999999999987542 22356554321 356676567744 999
Q ss_pred HHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCC
Q psy13349 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531 (604)
Q Consensus 452 eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~ 531 (604)
||+..+.. ...++.. .+.+.++.+ +. .+|+++|+||||++
T Consensus 78 d~l~~~~s-~~~~e~~------~~~~iL~~~-------~~--------------------------~~p~llllDEp~~g 117 (199)
T cd03283 78 DDLRDGIS-YFYAELR------RLKEIVEKA-------KK--------------------------GEPVLFLLDEIFKG 117 (199)
T ss_pred hccccccC-hHHHHHH------HHHHHHHhc-------cC--------------------------CCCeEEEEecccCC
Confidence 99988652 1122221 122222221 20 79999999999999
Q ss_pred CCHHHHHHHHH-HHHHHh-CCcEEEEEccChhHHhhc---CeEEEE
Q psy13349 532 LDSEAEIAIQK-SLYNLM-KGKTVIAIAHRLSTISAM---DRLIVL 572 (604)
Q Consensus 532 LD~~~~~~i~~-~i~~~~-~~~t~i~itH~l~~~~~~---d~i~vl 572 (604)
+|+.+...+.. .+++.. ++.|+|++||+++.+... ++|-.+
T Consensus 118 lD~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~~ 163 (199)
T cd03283 118 TNSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRNY 163 (199)
T ss_pred CCHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEEE
Confidence 99998877654 455443 478999999999876554 444443
No 415
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=99.69 E-value=2.3e-17 Score=142.34 Aligned_cols=76 Identities=20% Similarity=0.236 Sum_probs=71.8
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRD 452 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 452 (604)
.++|++++|++++||.++|+||||||||||++++. +|++.++|.|+..++.++.++.++++||+ +|++||+|
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~~~~~~~~~~~q~--lf~~ti~~ 73 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIREDSKDELIGRNPEL--GLEIRLRL 73 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhhhcCCEEEEechh--cchhhHHh
Confidence 46899999999999999999999999999999986 79999999999999988899999999999 99999999
Q ss_pred HHhc
Q psy13349 453 NILY 456 (604)
Q Consensus 453 Ni~~ 456 (604)
||.+
T Consensus 74 Ni~~ 77 (107)
T cd00820 74 NIFL 77 (107)
T ss_pred hcee
Confidence 9988
No 416
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=99.66 E-value=4.5e-16 Score=157.71 Aligned_cols=141 Identities=21% Similarity=0.310 Sum_probs=103.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC-HHHHhccceEEcccCcCCc-ccHHHHHhcCCCCCCHH
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESLREQIGMVTQDTSLLH-RSIRDNILYGRPDASEC 464 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~-~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~g~~~~~~~ 464 (604)
+.++|+||+|||||||++.|+|++.|++|+|.++|.++...+ ..++...++++||.. ++. .++.||. |
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~~~ei~~~~~~~~q~~-~~~r~~v~~~~----~----- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDERSEIAGCVNGVPQHD-VGIRTDVLDGC----P----- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchhHHHHHHHhccccccc-ccccccccccc----h-----
Confidence 678999999999999999999999999999999999998765 567777888999965 332 2343331 1
Q ss_pred HHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHH
Q psy13349 465 ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSL 544 (604)
Q Consensus 465 ~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i 544 (604)
+.. | -.+++|+ .+|+++++|||++ .+.+...+
T Consensus 182 ------k~~----------------~------------------~~~~i~~--~~P~villDE~~~------~e~~~~l~ 213 (270)
T TIGR02858 182 ------KAE----------------G------------------MMMLIRS--MSPDVIVVDEIGR------EEDVEALL 213 (270)
T ss_pred ------HHH----------------H------------------HHHHHHh--CCCCEEEEeCCCc------HHHHHHHH
Confidence 000 1 1455555 4999999999974 23344444
Q ss_pred HHHhCCcEEEEEccChhH--H------------hhcCeEEEEeCCEEeEecChhHHh
Q psy13349 545 YNLMKGKTVIAIAHRLST--I------------SAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 545 ~~~~~~~t~i~itH~l~~--~------------~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+....++|+|++||+.+. + ..+||+++|++|+ ..|+.+++.
T Consensus 214 ~~~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~--~~g~~~~i~ 268 (270)
T TIGR02858 214 EALHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK--GPGTVEAVY 268 (270)
T ss_pred HHHhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC--CCCceeecc
Confidence 444568999999997665 3 3379999999887 677776654
No 417
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.64 E-value=1.1e-15 Score=149.24 Aligned_cols=140 Identities=21% Similarity=0.197 Sum_probs=98.1
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce-EEcccCcCCcccH
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG-MVTQDTSLLHRSI 450 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~-~v~Q~~~lf~~ti 450 (604)
++.+.+|+++++++|+.++|+|||||||||+++.++++. +..++| +||-.. ..-++
T Consensus 15 ~~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~---------------------~la~~G~~vpa~~--~~l~~ 71 (204)
T cd03282 15 KNFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLA---------------------IMAQIGCFVPAEY--ATLPI 71 (204)
T ss_pred CcEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHH---------------------HHHHcCCCcchhh--cCccC
Confidence 346899999999999999999999999999999998873 222222 222211 12245
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC
Q psy13349 451 RDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530 (604)
Q Consensus 451 ~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts 530 (604)
.|||...- +.+..+.++..++|+|++|+ ..+-++..+|++++||||++
T Consensus 72 ~d~I~~~~-------------------------------~~~d~~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~ 119 (204)
T cd03282 72 FNRLLSRL-------------------------------SNDDSMERNLSTFASEMSET-AYILDYADGDSLVLIDELGR 119 (204)
T ss_pred hhheeEec-------------------------------CCccccchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccC
Confidence 55553211 11112334456899999975 45556788999999999999
Q ss_pred CCCHHHHHHHHH-HHHHHh-CCcEEEEEccChhHHhhc
Q psy13349 531 ALDSEAEIAIQK-SLYNLM-KGKTVIAIAHRLSTISAM 566 (604)
Q Consensus 531 ~LD~~~~~~i~~-~i~~~~-~~~t~i~itH~l~~~~~~ 566 (604)
++|+.....+.. .++.+. .++++|++||+.+.++.+
T Consensus 120 gt~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~ 157 (204)
T cd03282 120 GTSSADGFAISLAILECLIKKESTVFFATHFRDIAAIL 157 (204)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHh
Confidence 999987655543 344433 478999999999987764
No 418
>KOG0066|consensus
Probab=99.63 E-value=1.7e-16 Score=162.95 Aligned_cols=210 Identities=27% Similarity=0.394 Sum_probs=137.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEECCEeCCCCCHHH----H
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR--FYDIKYGEILIDGQNISNVSQES----L 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~I~i~g~~~~~~~~~~----~ 432 (604)
+|.++|.+.+-.+ +..+.|-||.|-.|..+++|||||-|||||++-|+. +--|..=.+.++.+++..-+... +
T Consensus 264 DIKiEnF~ISA~G-k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tvl 342 (807)
T KOG0066|consen 264 DIKIENFDISAQG-KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTVL 342 (807)
T ss_pred cceeeeeeeeccc-ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHHH
Confidence 5788888777643 457889999999999999999999999999998864 23344344555555543211110 0
Q ss_pred ---hccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHH---HHHc-------hHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 433 ---REQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNA---AKCA-------EADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 433 ---r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a---~~~~-------~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
.++..++-.+.- +..-+.-|...+ .+++.++ ++.. .+...+..| |++..+-++.
T Consensus 343 ~aD~kRl~lLeee~~-----L~~q~e~Gd~ta-aErl~~v~~ELraiGA~sAEarARRILAGL-------GFskEMQ~rP 409 (807)
T KOG0066|consen 343 KADKKRLALLEEEAK-----LMSQIEEGDTTA-AERLKEVADELRAIGADSAEARARRILAGL-------GFSKEMQERP 409 (807)
T ss_pred HhhHHHHHHHHHHHH-----HHHHHHcCchHH-HHHHHHHHHHHHHhccccchhHHHHHHhhc-------CCChhHhcCC
Confidence 011111111111 111111121111 1122221 1111 122222222 7777777765
Q ss_pred -CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 500 -IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 500 -~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
..+|||=|-|++|||||+-.|-+|.|||||++||....--+-+.+..+ .+|.++|+|+-+++.. |..|+.+++-++
T Consensus 410 t~kFSGGWRMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgW--kKTLLIVSHDQgFLD~VCtdIIHLD~qkL 487 (807)
T KOG0066|consen 410 TTKFSGGWRMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGW--KKTLLIVSHDQGFLDSVCTDIIHLDNQKL 487 (807)
T ss_pred ccccCCceeeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhh--hheeEEEecccchHHHHHHHHhhhhhhhh
Confidence 489999999999999999999999999999999998877666666554 5799999999999987 899999998776
Q ss_pred e-EecChh
Q psy13349 578 A-EEGSHL 584 (604)
Q Consensus 578 v-~~g~~~ 584 (604)
- ..|+|.
T Consensus 488 hyYrGNY~ 495 (807)
T KOG0066|consen 488 HYYRGNYT 495 (807)
T ss_pred hhhcchHH
Confidence 3 456553
No 419
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=9.9e-16 Score=187.13 Aligned_cols=118 Identities=24% Similarity=0.342 Sum_probs=104.6
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH------HHHHHHHHcc
Q psy13349 445 LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ------RIAIARVILK 518 (604)
Q Consensus 445 lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q------rialARall~ 518 (604)
.|+||++|||.+ +|+++++ ..+++.++..+|+..+|. | ||.++.+| .||||||| |++||||++.
T Consensus 1153 ~~~~~~~~~i~~-~~~~~~~--~~~~~~~~~~~~~~~~~~-----~-~~~~~~~~-~lS~Gq~~~~~~~~rlala~~~~~ 1222 (1311)
T TIGR00606 1153 TYRGQDIEYIEI-RSDADEN--VSASDKRRNYNYRVVMLK-----G-DTALDMRG-RCSAGQKVLASLIIRLALAETFCL 1222 (1311)
T ss_pred HcCccHHHHhhc-CCCCChH--HHHHHHcCchHHHhccCC-----C-CeecCCCC-CCchhhhhHhhHhHHHHHHHHHhc
Confidence 489999999999 8888776 688888999999999998 9 99999886 89999999 9999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHh------CCcEEEEEccChhHHhh------cCeEEEE
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLM------KGKTVIAIAHRLSTISA------MDRLIVL 572 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~------~~~t~i~itH~l~~~~~------~d~i~vl 572 (604)
+|++++|||||++||+.+...+.+.|.++. .+.|+|+|||++..+.. +|+.|-+
T Consensus 1223 ~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~~~~~~~~~~~~~~~ 1288 (1311)
T TIGR00606 1223 NCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVELLGRSEYVEKFYRL 1288 (1311)
T ss_pred CCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHHHHhhccccceeeee
Confidence 999999999999999999999988887652 36799999999998753 4676655
No 420
>KOG0063|consensus
Probab=99.60 E-value=8.1e-15 Score=150.83 Aligned_cols=200 Identities=25% Similarity=0.345 Sum_probs=143.3
Q ss_pred EEeCCCCceeeecceEEeCCc-----EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcc
Q psy13349 367 FSYDQKHLIINNLSLTIQPGE-----KIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQ 441 (604)
Q Consensus 367 f~y~~~~~~l~~isl~i~~G~-----~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q 441 (604)
+.||+.+..+.+..|.|+.|+ ++...|+||.||||++++++|...|++| .++..+ +++|=||
T Consensus 343 y~Yp~m~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~------~e~p~l-------nVSykpq 409 (592)
T KOG0063|consen 343 YSYPKMKKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEG------GEIPVL-------NVSYKPQ 409 (592)
T ss_pred eccCcceeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCcc------Cccccc-------ceecccc
Confidence 567776667889999999986 6789999999999999999999999875 223332 5888888
Q ss_pred cCc-CCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q psy13349 442 DTS-LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNA 520 (604)
Q Consensus 442 ~~~-lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p 520 (604)
... =|.+|+|+-+. +.++.+-..- .|+... ..+...+..++....+|||||.||+|+|-.|=+.+
T Consensus 410 kispK~~~tvR~ll~--------~kIr~ay~~p---qF~~dv---mkpL~ie~i~dqevq~lSggelQRval~KOGGKpA 475 (592)
T KOG0063|consen 410 KISPKREGTVRQLLH--------TKIRDAYMHP---QFVNDV---MKPLQIENIIDQEVQGLSGGELQRVALALCLGKPA 475 (592)
T ss_pred ccCccccchHHHHHH--------HHhHhhhcCH---HHHHhh---hhhhhHHHHHhHHhhcCCchhhHHHHHHHhcCCCC
Confidence 644 57889987652 2333322111 111111 01113455666777899999999999999999999
Q ss_pred CeEEEeccCCCCCHHHHHHHHHHHHHH--hCCcEEEEEccChhHHhh-cCeEEEEeCC--EEeEecChhHHhhcCcHH
Q psy13349 521 PILLLDEATSALDSEAEIAIQKSLYNL--MKGKTVIAIAHRLSTISA-MDRLIVLDNG--CVAEEGSHLDLLKKNGLY 593 (604)
Q Consensus 521 ~ililDE~ts~LD~~~~~~i~~~i~~~--~~~~t~i~itH~l~~~~~-~d~i~vl~~G--~iv~~g~~~~l~~~~~~y 593 (604)
++++.|||.+-||.+.+..--..+++. ...+|-.+|-|++-.... +||++|.+.- ...-.-.++.|++....|
T Consensus 476 dvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~G~ps~~~~a~~p~~Ll~gmN~f 553 (592)
T KOG0063|consen 476 DVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFEGQPSVNTVANSPQSLLAGMNRF 553 (592)
T ss_pred ceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEecCcccccccCChhHHHHHhHHH
Confidence 999999999999999876666666654 257899999999987654 8999998642 223333455555443333
No 421
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=99.60 E-value=1.9e-15 Score=149.06 Aligned_cols=155 Identities=22% Similarity=0.231 Sum_probs=101.8
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIR 451 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 451 (604)
+.+.+|++++.++ ++++|+|||||||||+++.+++..-. |+ .|..+ +. .+..++++.| +|.. ++.
T Consensus 18 ~~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l--~~---~g~~v---p~--~~~~i~~~~~---i~~~~~~~ 83 (216)
T cd03284 18 PFVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALL--AQ---IGSFV---PA--SKAEIGVVDR---IFTRIGAS 83 (216)
T ss_pred ceEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHH--hc---cCCee---cc--ccceecceee---EeccCCch
Confidence 3578899999887 99999999999999999999874421 11 11111 11 1235666654 3322 455
Q ss_pred HHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH--ccCCCeEEEecc-
Q psy13349 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI--LKNAPILLLDEA- 528 (604)
Q Consensus 452 eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal--l~~p~ililDE~- 528 (604)
||+..|. |-=...+..+++++ ..+|++++||||
T Consensus 84 ~~ls~g~--------------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~ 119 (216)
T cd03284 84 DDLAGGR--------------------------------------------STFMVEMVETANILNNATERSLVLLDEIG 119 (216)
T ss_pred hhhccCc--------------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCC
Confidence 5554432 11111122344443 469999999999
Q ss_pred --CCCCCHHHH-HHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHH
Q psy13349 529 --TSALDSEAE-IAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 529 --ts~LD~~~~-~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l 586 (604)
|+++|.... ..+.+.+.+. .++|+|++||+.+..+.+|++-.+++|++...++.+++
T Consensus 120 ~gt~~lD~~~~~~~il~~l~~~-~~~~vi~~TH~~~l~~l~~~~~~v~~~~~~~~~~~~~l 179 (216)
T cd03284 120 RGTSTYDGLSIAWAIVEYLHEK-IGAKTLFATHYHELTELEGKLPRVKNFHVAVKEKGGGV 179 (216)
T ss_pred CCCChHHHHHHHHHHHHHHHhc-cCCcEEEEeCcHHHHHHhhcCCCeEEEEEEEEeeCCeE
Confidence 999998652 4455555432 37899999999887778888877888988776655554
No 422
>PRK00064 recF recombination protein F; Reviewed
Probab=99.56 E-value=6.4e-14 Score=148.81 Aligned_cols=76 Identities=28% Similarity=0.395 Sum_probs=66.1
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh---cC
Q psy13349 500 IKLSGGQRQRIAIARVIL---------KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA---MD 567 (604)
Q Consensus 500 ~~LSgGq~QrialARall---------~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~---~d 567 (604)
..+|.||+|++++|+++. ++|||++||||+|+||+.....+.+.+.+. +..++++||+...+.. .+
T Consensus 272 ~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~~~ 349 (361)
T PRK00064 272 DFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLENA 349 (361)
T ss_pred HhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhccC
Confidence 578999999999999885 799999999999999999999999988653 4588999998876544 46
Q ss_pred eEEEEeCCEE
Q psy13349 568 RLIVLDNGCV 577 (604)
Q Consensus 568 ~i~vl~~G~i 577 (604)
+++.+++|++
T Consensus 350 ~i~~v~~G~i 359 (361)
T PRK00064 350 KIFHVEQGKI 359 (361)
T ss_pred cEEEEeCCEE
Confidence 8999999997
No 423
>PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression []. The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A ....
Probab=99.53 E-value=1.5e-14 Score=143.24 Aligned_cols=72 Identities=32% Similarity=0.482 Sum_probs=59.3
Q ss_pred CCChhHHHHHHHHHHH----ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEE
Q psy13349 501 KLSGGQRQRIAIARVI----LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572 (604)
Q Consensus 501 ~LSgGq~QrialARal----l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl 572 (604)
.||||||-+++||=-| ..++|++||||+.++||+.....+.+.|++..++.-+|++||+......||+.+.+
T Consensus 136 ~lSgGEk~~~~Lal~lA~~~~~~~p~~ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~~~~a~~~~~v 211 (220)
T PF02463_consen 136 FLSGGEKSLVALALLLALQRYKPSPFLILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEMFEDADKLIGV 211 (220)
T ss_dssp GS-HHHHHHHHHHHHHHHHTCS--SEEEEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHHHTT-SEEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999998433 46789999999999999999999999999988788999999999999999998876
No 424
>PRK07721 fliI flagellum-specific ATP synthase; Validated
Probab=99.47 E-value=8e-13 Score=142.36 Aligned_cols=177 Identities=19% Similarity=0.304 Sum_probs=120.8
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC---EeCCC-----CCHHHHhccceEEcccCc
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG---QNISN-----VSQESLREQIGMVTQDTS 444 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g---~~~~~-----~~~~~~r~~i~~v~Q~~~ 444 (604)
..+++++ |++.+|++++|+|+||+|||||+++|+|+++|+.|.|.+.| .++.+ ++...+++.+.+|.+...
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4689999 99999999999999999999999999999999999999954 44443 344557778888865321
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccc-cCCCCCChhHHHH-HHHHHHHccCCCe
Q psy13349 445 LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVG-EHGIKLSGGQRQR-IAIARVILKNAPI 522 (604)
Q Consensus 445 lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~-e~g~~LSgGq~Qr-ialARall~~p~i 522 (604)
+ .-++...+.-...+.|+... .|.|..+= +.-.++- |.|| |+++ +.+||
T Consensus 225 ----~------------~~~r~~~~~~a~~iAEyfr~-------~g~~Vll~~Dsltr~A--~A~rEisl~---~ge~P- 275 (438)
T PRK07721 225 ----P------------ALMRIKGAYTATAIAEYFRD-------QGLNVMLMMDSVTRVA--MAQREIGLA---VGEPP- 275 (438)
T ss_pred ----C------------HHHHHHHHHHHHHHHHHHHH-------CCCcEEEEEeChHHHH--HHHHHHHHh---cCCCC-
Confidence 1 11122222222223343332 16665443 2111111 1111 2221 23333
Q ss_pred EEEeccCCCCCHHHHHHHHHHHHHHh---CCc-----EEEEEccChhHHhhcCeEEEEeCCEEeEecChhH
Q psy13349 523 LLLDEATSALDSEAEIAIQKSLYNLM---KGK-----TVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 523 lilDE~ts~LD~~~~~~i~~~i~~~~---~~~-----t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~ 585 (604)
.|+|+||.....+.+.+.+.. ++. ||++.+|+++. ..||++.++.+|+|+..++..+
T Consensus 276 -----~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e-~i~d~v~~i~dG~Ivls~~la~ 340 (438)
T PRK07721 276 -----TTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE-PIADTVRGILDGHFVLDRQLAN 340 (438)
T ss_pred -----ccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc-hhhhhEEEecCEEEEEeccHHH
Confidence 489999999999999988775 365 99999999995 7799999999999998876543
No 425
>PHA02562 46 endonuclease subunit; Provisional
Probab=99.46 E-value=4.8e-14 Score=159.09 Aligned_cols=87 Identities=28% Similarity=0.463 Sum_probs=78.4
Q ss_pred CCccccccCC------CCCChhHHHHHHHHHHHc----------cCCCeEEEeccC-CCCCHHHHHHHHHHHHHHhCCcE
Q psy13349 490 GYDAHVGEHG------IKLSGGQRQRIAIARVIL----------KNAPILLLDEAT-SALDSEAEIAIQKSLYNLMKGKT 552 (604)
Q Consensus 490 g~~t~v~e~g------~~LSgGq~QrialARall----------~~p~ililDE~t-s~LD~~~~~~i~~~i~~~~~~~t 552 (604)
++++.+++.| .+||||||||++|||||+ .+|+++|||||| ++||+.+...+.+.|.+. ++.|
T Consensus 451 ~~~~~~~~~g~~~~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~ 529 (562)
T PHA02562 451 EFNETIKSRGREDFSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTN 529 (562)
T ss_pred hhhhHHhcCCCCccChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCe
Confidence 7778887777 689999999999999987 599999999998 789999999999999888 7889
Q ss_pred EEEEccChhHHhhcCeEEEEeC-CEE
Q psy13349 553 VIAIAHRLSTISAMDRLIVLDN-GCV 577 (604)
Q Consensus 553 ~i~itH~l~~~~~~d~i~vl~~-G~i 577 (604)
+|+|||+.+....||++++|++ |+.
T Consensus 530 iiiish~~~~~~~~d~~~~l~~~~~~ 555 (562)
T PHA02562 530 VFVISHKDHDPQKFDRHLKMEKVGRF 555 (562)
T ss_pred EEEEECchhchhhhhcEEEEEEECCe
Confidence 9999999988889999999986 543
No 426
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.46 E-value=4.2e-13 Score=132.14 Aligned_cols=135 Identities=17% Similarity=0.213 Sum_probs=90.5
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCc--cc
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR--FYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLH--RS 449 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~--~t 449 (604)
.+-+|+++.=..+.+++|+||||+|||||++.+.. .. +..|...... .-.+++..|...-+. +|
T Consensus 17 ~vpnd~~l~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~-----------~~~~~~~d~i~~~l~~~~s 84 (213)
T cd03281 17 FVPNDTEIGGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD-----------SATIGLVDKIFTRMSSRES 84 (213)
T ss_pred eEcceEEecCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC-----------CcEEeeeeeeeeeeCCccC
Confidence 34555655422238999999999999999999983 33 5566654322 124677777543221 12
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccC
Q psy13349 450 IRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529 (604)
Q Consensus 450 i~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~t 529 (604)
+.+++ ..| .-+-||+++|+++..+|++++||||+
T Consensus 85 i~~~~---------------------S~f-------------------------~~el~~l~~~l~~~~~~slvllDE~~ 118 (213)
T cd03281 85 VSSGQ---------------------SAF-------------------------MIDLYQVSKALRLATRRSLVLIDEFG 118 (213)
T ss_pred hhhcc---------------------chH-------------------------HHHHHHHHHHHHhCCCCcEEEecccc
Confidence 21111 011 23458999999999999999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHhC----CcEEEEEccChhHHhhc
Q psy13349 530 SALDSEAEIAI-QKSLYNLMK----GKTVIAIAHRLSTISAM 566 (604)
Q Consensus 530 s~LD~~~~~~i-~~~i~~~~~----~~t~i~itH~l~~~~~~ 566 (604)
+++|+.....+ ...++++.+ +.++|++||.++.++..
T Consensus 119 ~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~ 160 (213)
T cd03281 119 KGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRS 160 (213)
T ss_pred CCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhh
Confidence 99999765554 445555532 24899999999987764
No 427
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=99.44 E-value=1.5e-13 Score=132.56 Aligned_cols=69 Identities=17% Similarity=0.201 Sum_probs=52.5
Q ss_pred cCCCCCChhHHHHHHHHHHHcc--CCCeEEEeccCCCCCHHHHHHHHHH-HHHHh--CCcEEEEEccChhHHhhcCe
Q psy13349 497 EHGIKLSGGQRQRIAIARVILK--NAPILLLDEATSALDSEAEIAIQKS-LYNLM--KGKTVIAIAHRLSTISAMDR 568 (604)
Q Consensus 497 e~g~~LSgGq~QrialARall~--~p~ililDE~ts~LD~~~~~~i~~~-i~~~~--~~~t~i~itH~l~~~~~~d~ 568 (604)
++...+|+|++| +++++.. +|+++|+|||++++|+.....+... ++.+. .++++|++||..+..+.+|+
T Consensus 57 ~~~s~fs~~~~~---l~~~l~~~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~l~~~~~~ 130 (185)
T smart00534 57 QGLSTFMVEMKE---TANILKNATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHELTKLADE 130 (185)
T ss_pred ccccHHHHHHHH---HHHHHHhCCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHHHhhc
Confidence 334578888887 4555554 9999999999999999987777544 44443 37899999999987776764
No 428
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=99.42 E-value=1.4e-12 Score=150.01 Aligned_cols=145 Identities=17% Similarity=0.233 Sum_probs=98.8
Q ss_pred eEEEEEEEEEeCCCCceee-----ecceEEeCC-cEEEEEcCCCCcHHHHHHHHhcC-CCCCccEEEECCEeCCCCCHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIIN-----NLSLTIQPG-EKIGLVGRSGAGKSTINNLLLRF-YDIKYGEILIDGQNISNVSQES 431 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~-----~isl~i~~G-~~~~ivG~sGsGKSTl~~ll~~~-~~~~~G~I~i~g~~~~~~~~~~ 431 (604)
.+.++++.. |.++ .+|+++.+| +.++|+||||+||||+++++++. +.+..|
T Consensus 295 ~i~l~~~rh------Pll~~~~~vp~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G---------------- 352 (771)
T TIGR01069 295 KIILENARH------PLLKEPKVVPFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSG---------------- 352 (771)
T ss_pred CEEEccccC------ceecCCceEeceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhC----------------
Confidence 577776643 3443 378888877 99999999999999999999987 333333
Q ss_pred HhccceEEcccCc-CCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 432 LREQIGMVTQDTS-LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 432 ~r~~i~~v~Q~~~-lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
.+||.+.. .+ .+.+++.. ...++ + .+.++-.++|+|++|+.
T Consensus 353 -----~~Vpa~~~~~~--~~~d~i~~---~i~~~------------~----------------si~~~LStfS~~m~~~~ 394 (771)
T TIGR01069 353 -----IPIPANEHSEI--PYFEEIFA---DIGDE------------Q----------------SIEQNLSTFSGHMKNIS 394 (771)
T ss_pred -----CCccCCccccc--cchhheee---ecChH------------h----------------HHhhhhhHHHHHHHHHH
Confidence 14444331 11 11222211 01110 0 01122346999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHH-HHHHHHh-CCcEEEEEccChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQ-KSLYNLM-KGKTVIAIAHRLSTIS 564 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~-~~i~~~~-~~~t~i~itH~l~~~~ 564 (604)
.+++++ .+|+++|||||++++|+.....+. ..+..+. .++++|++||..+...
T Consensus 395 ~il~~~-~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~~~g~~viitTH~~eL~~ 449 (771)
T TIGR01069 395 AILSKT-TENSLVLFDELGAGTDPDEGSALAISILEYLLKQNAQVLITTHYKELKA 449 (771)
T ss_pred HHHHhc-CCCcEEEecCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHH
Confidence 999987 789999999999999999998884 4455443 4789999999987643
No 429
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=99.38 E-value=9.5e-13 Score=147.94 Aligned_cols=77 Identities=22% Similarity=0.321 Sum_probs=72.0
Q ss_pred CCCChhHHHHHHHHHHHccC----CCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCC
Q psy13349 500 IKLSGGQRQRIAIARVILKN----APILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~----p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G 575 (604)
..+||||+||++|||+++.. |+++||||||++||+.+...+.+.+.++.+++|||+|||++..+..||++++|++|
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~~~ad~~~~l~k~ 518 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVAAHADAHFKVEKE 518 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhcCeEEEEEEc
Confidence 46899999999999999985 69999999999999999999999999887889999999999999999999999887
Q ss_pred E
Q psy13349 576 C 576 (604)
Q Consensus 576 ~ 576 (604)
.
T Consensus 519 ~ 519 (563)
T TIGR00634 519 G 519 (563)
T ss_pred c
Confidence 5
No 430
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.35 E-value=1.6e-12 Score=128.28 Aligned_cols=44 Identities=14% Similarity=0.199 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccC-----CCCCHHHHHHHHHHHHHHh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEAT-----SALDSEAEIAIQKSLYNLM 548 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~t-----s~LD~~~~~~i~~~i~~~~ 548 (604)
-|++++.|||+++.+|+++++|||| ++||+.+.+.+.+.++++.
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999998764
No 431
>PRK10869 recombination and repair protein; Provisional
Probab=99.34 E-value=2.5e-12 Score=143.41 Aligned_cols=76 Identities=21% Similarity=0.345 Sum_probs=71.2
Q ss_pred CCChhHHHHHHHHHHHcc----CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCE
Q psy13349 501 KLSGGQRQRIAIARVILK----NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGC 576 (604)
Q Consensus 501 ~LSgGq~QrialARall~----~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~ 576 (604)
.+||||+||++|||+++. +|+++|+|||+++||..+...+.+.+++..+++|+|+|||++..+..||++++++++.
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~~~ad~~~~v~k~~ 509 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVAGCGHQHFFVSKET 509 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 589999999999999996 5899999999999999999999999999877899999999999999999999998754
No 432
>TIGR00611 recf recF protein. All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.30 E-value=1.9e-11 Score=129.86 Aligned_cols=63 Identities=32% Similarity=0.397 Sum_probs=57.0
Q ss_pred CCCChhHHHHHHHHHHHcc---------CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh
Q psy13349 500 IKLSGGQRQRIAIARVILK---------NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS 564 (604)
Q Consensus 500 ~~LSgGq~QrialARall~---------~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~ 564 (604)
..+|.||+++++||.+|.. +|||++||||+|+||+.....+.+.+.+. +.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999653 579999999987654
No 433
>COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair]
Probab=99.28 E-value=4.3e-11 Score=132.61 Aligned_cols=103 Identities=30% Similarity=0.413 Sum_probs=90.5
Q ss_pred CCCccc-cccCCCCCChhHHHHHHHHHHHccC--CCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh
Q psy13349 489 KGYDAH-VGEHGIKLSGGQRQRIAIARVILKN--APILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS 564 (604)
Q Consensus 489 ~g~~t~-v~e~g~~LSgGq~QrialARall~~--p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~ 564 (604)
.|++.. +.....+|||||.|||-||+.+-.+ -=+++||||+.+|-+..-+++.+.|++++ .|.|+|+|-|+.++++
T Consensus 468 VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDedti~ 547 (935)
T COG0178 468 VGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDEDTIR 547 (935)
T ss_pred cCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCHHHHh
Confidence 366653 4556679999999999999999876 34889999999999999999999998887 4899999999999999
Q ss_pred hcCeEEEE------eCCEEeEecChhHHhhcCc
Q psy13349 565 AMDRLIVL------DNGCVAEEGSHLDLLKKNG 591 (604)
Q Consensus 565 ~~d~i~vl------~~G~iv~~g~~~~l~~~~~ 591 (604)
.||+|+-| ..|+||.+|+++|+++++.
T Consensus 548 ~AD~iIDiGPgAG~~GGeIv~~Gtp~~i~~~~~ 580 (935)
T COG0178 548 AADHIIDIGPGAGEHGGEIVAEGTPEELLANPE 580 (935)
T ss_pred hcCEEEeeCCCCCcCCCEEEEccCHHHHHhCCc
Confidence 99999998 5689999999999998763
No 434
>PRK13695 putative NTPase; Provisional
Probab=99.27 E-value=1.2e-11 Score=117.87 Aligned_cols=95 Identities=21% Similarity=0.195 Sum_probs=71.3
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCeEEEec--cCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 497 EHGIKLSGGQRQRIAIARVILKNAPILLLDE--ATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 497 e~g~~LSgGq~QrialARall~~p~ililDE--~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
.....+||+++-+..+++..+++|+++++|| |+.++|+...+.+.+.+ ..++++|+++|+-.....+|+|..+.+
T Consensus 74 ~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~~~~l~~~~---~~~~~~i~v~h~~~~~~~~~~i~~~~~ 150 (174)
T PRK13695 74 KYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKFVKAVEEVL---DSEKPVIATLHRRSVHPFVQEIKSRPG 150 (174)
T ss_pred eEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHHHHHHHHHH---hCCCeEEEEECchhhHHHHHHHhccCC
Confidence 3345699999999999999999999999999 55566655555555444 247899999999766677999999999
Q ss_pred CEEeEecChhHHhhcCcHHHHHHH
Q psy13349 575 GCVAEEGSHLDLLKKNGLYSRLWR 598 (604)
Q Consensus 575 G~iv~~g~~~~l~~~~~~y~~l~~ 598 (604)
|+|.+-- ..+++..|.+..+
T Consensus 151 ~~i~~~~----~~~r~~~~~~~~~ 170 (174)
T PRK13695 151 GRVYELT----PENRDSLPFEILN 170 (174)
T ss_pred cEEEEEc----chhhhhHHHHHHH
Confidence 9998762 1234445555443
No 435
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.27 E-value=2e-11 Score=120.67 Aligned_cols=138 Identities=19% Similarity=0.222 Sum_probs=85.3
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR-FYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SI 450 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~-~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 450 (604)
+.+.+|+++++.+|++++|.||||+||||+++.+++ .+.++.|...... . -.+++.+| +|.. ..
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~-~----------~~~~~~~~---i~~~~~~ 83 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS-S----------ATLSIFDS---VLTRMGA 83 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC-c----------eEEeccce---EEEEecC
Confidence 468999999999999999999999999999999999 6777888754322 1 12333222 1110 11
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC
Q psy13349 451 RDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530 (604)
Q Consensus 451 ~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts 530 (604)
.|++.-| ...|- .|-+|++-+-.-..+|+++|||||.+
T Consensus 84 ~d~~~~~-----------------~StF~-------------------------~e~~~~~~il~~~~~~sLvllDE~~~ 121 (222)
T cd03287 84 SDSIQHG-----------------MSTFM-------------------------VELSETSHILSNCTSRSLVILDELGR 121 (222)
T ss_pred ccccccc-----------------cchHH-------------------------HHHHHHHHHHHhCCCCeEEEEccCCC
Confidence 1121111 11111 11122222222345799999999977
Q ss_pred CCCHHHHHHH-HHHHHHHh--CCcEEEEEccChhHHhhc
Q psy13349 531 ALDSEAEIAI-QKSLYNLM--KGKTVIAIAHRLSTISAM 566 (604)
Q Consensus 531 ~LD~~~~~~i-~~~i~~~~--~~~t~i~itH~l~~~~~~ 566 (604)
+.|+.....+ ...++.+. .++|+|++||+.+..+..
T Consensus 122 gT~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~~~ 160 (222)
T cd03287 122 GTSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGEIL 160 (222)
T ss_pred CCChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHHHH
Confidence 7776555554 23333333 378999999999875543
No 436
>PRK14079 recF recombination protein F; Provisional
Probab=99.26 E-value=3.7e-11 Score=127.09 Aligned_cols=76 Identities=22% Similarity=0.295 Sum_probs=61.9
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEE
Q psy13349 500 IKLSGGQRQRIAIARVIL---------KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLI 570 (604)
Q Consensus 500 ~~LSgGq~QrialARall---------~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~ 570 (604)
.-+|+||++++++|+.|. .+||+++||||+|.||+.....+.+.+.... .++|..|+ .-..+|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~---~~~~~~~~~ 336 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE---APPGAALTL 336 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC---CCCCCceEE
Confidence 467999999999999998 8999999999999999999999998885432 34444333 445689999
Q ss_pred EEeCCEEeEe
Q psy13349 571 VLDNGCVAEE 580 (604)
Q Consensus 571 vl~~G~iv~~ 580 (604)
.+++|++.-+
T Consensus 337 ~~~~~~~~~~ 346 (349)
T PRK14079 337 RIEAGVFTPE 346 (349)
T ss_pred EEeccEecCC
Confidence 9999987543
No 437
>PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed
Probab=99.25 E-value=6.8e-11 Score=136.64 Aligned_cols=79 Identities=25% Similarity=0.298 Sum_probs=62.0
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHH-HHHHh-CCcEEEEEccChhHHhhc-CeEEEEeC
Q psy13349 498 HGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS-LYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDN 574 (604)
Q Consensus 498 ~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~-i~~~~-~~~t~i~itH~l~~~~~~-d~i~vl~~ 574 (604)
+-.++|+|++|+..|+|++ .+|+++|||||++++|+.....+... +..+. .++++|++||..+....+ |+..+ .+
T Consensus 387 ~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v-~~ 464 (782)
T PRK00409 387 SLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV-EN 464 (782)
T ss_pred chhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe-EE
Confidence 3457999999999999999 89999999999999999988888654 44433 478999999998877664 44443 34
Q ss_pred CEEe
Q psy13349 575 GCVA 578 (604)
Q Consensus 575 G~iv 578 (604)
+.+.
T Consensus 465 ~~~~ 468 (782)
T PRK00409 465 ASVE 468 (782)
T ss_pred EEEE
Confidence 5543
No 438
>KOG0063|consensus
Probab=99.25 E-value=8.7e-12 Score=128.77 Aligned_cols=173 Identities=25% Similarity=0.362 Sum_probs=112.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccC--cCCcccHHHHHhcC-CCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDT--SLLHRSIRDNILYG-RPD 460 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~--~lf~~ti~eNi~~g-~~~ 460 (604)
++|+..++||.||-||||-++.++|-.+|+-|.-. ++ .+|...++|---.. .-|.--+.+|+.-- .|.
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~-~p--------p~w~~il~~frgselq~yftk~le~~lk~~~kpQ 168 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYD-NP--------PDWQEILTYFRGSELQNYFTKILEDNLKAIIKPQ 168 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCC-CC--------cchHHHhhhhhhHHHhhhhhhhccccccCcCChH
Confidence 57999999999999999999999999999877532 22 22332333211100 01111233333211 110
Q ss_pred CCHHHHHHHHHH------------chHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEecc
Q psy13349 461 ASECELFNAAKC------------AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528 (604)
Q Consensus 461 ~~~~~i~~a~~~------------~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ 528 (604)
. -+.+-.+.+. -...+.+..+ .++.........|||||-||.|||-+.+.++++.++|||
T Consensus 169 y-vd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~-------~L~~~~~re~~~lsggelqrfaia~~~vq~advyMFDEp 240 (592)
T KOG0063|consen 169 Y-VDQIPRAVKGTVGSLLDRKDERDNKEEVCDQL-------DLNNLLDREVEQLSGGELQRFAIAMVCVQKADVYMFDEP 240 (592)
T ss_pred H-HHHHHHHHHHHHHHHHHHHhhcccHHHHHHHH-------HHhhHHHhhhhhcccchhhhhhhhhhhhhhcceeEecCC
Confidence 0 0111111111 0111122221 344445555678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEe
Q psy13349 529 TSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLD 573 (604)
Q Consensus 529 ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~ 573 (604)
.|-||.+...+--..|+.+. .++-+|+|-|+++.+.. .|-|.++-
T Consensus 241 SsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 241 SSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred cccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 99999998888777887765 68999999999998765 57666663
No 439
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=99.19 E-value=1.9e-10 Score=114.74 Aligned_cols=157 Identities=17% Similarity=0.208 Sum_probs=90.2
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHH-HHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTI-NNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl-~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
+.+++++..+++ -+++|+.+.++|++||||||| ++.+.++.++.+..+++... .+++++
T Consensus 8 ~~~~~ld~~l~g----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e----~~~~~~------ 67 (230)
T PRK08533 8 LSRDELHKRLGG----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ----LTTTEF------ 67 (230)
T ss_pred EEEeeeehhhCC----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC----CCHHHH------
Confidence 556666655543 379999999999999999999 69999887654444444321 111111
Q ss_pred EcccCcCCcccHHHHH-hcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 439 VTQDTSLLHRSIRDNI-LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi-~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
.++. .+|. + +++++.. + .+. .+. -...+|+++.++-.+++.+-
T Consensus 68 ------------~~~~~~~g~-~--------------~~~~~~~-~------~l~-~~~-~~~~~~~~~~~~~~l~~il~ 111 (230)
T PRK08533 68 ------------IKQMMSLGY-D--------------INKKLIS-G------KLL-YIP-VYPLLSGNSEKRKFLKKLMN 111 (230)
T ss_pred ------------HHHHHHhCC-c--------------hHHHhhc-C------cEE-EEE-ecccccChHHHHHHHHHHHH
Confidence 1111 1111 0 0000000 0 000 000 01235666655544444433
Q ss_pred c----CCCeEEEeccCCCC----CHHHHHHHHHHHHHHhC-CcEEEEEccChhHH--------hh-cCeEEEEe
Q psy13349 518 K----NAPILLLDEATSAL----DSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTI--------SA-MDRLIVLD 573 (604)
Q Consensus 518 ~----~p~ililDE~ts~L----D~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~--------~~-~d~i~vl~ 573 (604)
. +|+++++||||+.+ |+...+.+.+.++.+.+ ++|+++ ||+.... +. ||-|+.|+
T Consensus 112 ~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tvi~-t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 112 TRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVIIL-TANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEEEE-EecccccccccceeEEEeeeEEEEEE
Confidence 3 69999999999999 77777888888877653 665555 5554432 22 58888776
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=99.18 E-value=3.7e-11 Score=125.06 Aligned_cols=143 Identities=16% Similarity=0.168 Sum_probs=99.0
Q ss_pred cceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCC
Q psy13349 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGR 458 (604)
Q Consensus 379 isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~ 458 (604)
+++.+++|+.++|+||+|||||||+++|++++++..|.+.+++ ..++.... ++.+.++.+.. +
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~~~-~~~~~l~~~~~----~---------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFLPH-PNYVHLFYSKG----G---------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCCCC-CCEEEEEecCC----C----------
Confidence 5577889999999999999999999999999999999888753 33322211 11222211110 0
Q ss_pred CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHH
Q psy13349 459 PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538 (604)
Q Consensus 459 ~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~ 538 (604)
+ | +++-...=+++++|-.+|+++++|||.+ .
T Consensus 200 ~------------------------------~------------~~~~~~~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 200 Q------------------------------G------------LAKVTPKDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred C------------------------------C------------cCccCHHHHHHHHhcCCCCeEEEeccCC-------H
Confidence 0 0 0000111245667888999999999997 2
Q ss_pred HHHHHHHHHhCCc-EEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHh
Q psy13349 539 AIQKSLYNLMKGK-TVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 539 ~i~~~i~~~~~~~-t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
...+.++....+. +++.++|..+.....||+..|..|++...|.+.+.+
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~~~~~~~Rl~~l~~~~~~~~g~~~~~~ 280 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGSPEEAFEQLALMVKSSQAGLGLDFAYI 280 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCCHHHHHHHHHHHhhccccccCCCHHHH
Confidence 3344555444444 569999999988889999999999999889888776
No 441
>PRK01156 chromosome segregation protein; Provisional
Probab=99.14 E-value=1.2e-10 Score=138.50 Aligned_cols=76 Identities=24% Similarity=0.364 Sum_probs=67.1
Q ss_pred CCCCCChhHHHHHHH------HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-C--C-cEEEEEccChhHHhhcC
Q psy13349 498 HGIKLSGGQRQRIAI------ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-K--G-KTVIAIAHRLSTISAMD 567 (604)
Q Consensus 498 ~g~~LSgGq~Qrial------ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~--~-~t~i~itH~l~~~~~~d 567 (604)
.+..|||||+||+|| ||+++.+|++++|||||++||+.....+.+.+.... . + .|+|+|||+...+..||
T Consensus 798 ~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~~~~d 877 (895)
T PRK01156 798 GIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELLSVAD 877 (895)
T ss_pred ccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHHHhcC
Confidence 467899999999975 599999999999999999999999999988886432 2 2 48999999999999999
Q ss_pred eEEEEe
Q psy13349 568 RLIVLD 573 (604)
Q Consensus 568 ~i~vl~ 573 (604)
+|+.++
T Consensus 878 ~ii~~~ 883 (895)
T PRK01156 878 VAYEVK 883 (895)
T ss_pred eEEEEE
Confidence 999997
No 442
>TIGR00618 sbcc exonuclease SbcC. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.13 E-value=1.4e-10 Score=139.51 Aligned_cols=78 Identities=19% Similarity=0.181 Sum_probs=70.4
Q ss_pred CCCCCChhHHHHHHHHHHHcc----------CCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-
Q psy13349 498 HGIKLSGGQRQRIAIARVILK----------NAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA- 565 (604)
Q Consensus 498 ~g~~LSgGq~QrialARall~----------~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~- 565 (604)
...+|||||++|++||+||.. +|++|||||||++||+.+...+.+.|.++. .++||++|||.......
T Consensus 947 ~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~~~~ 1026 (1042)
T TIGR00618 947 PSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFRERI 1026 (1042)
T ss_pred CcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHhh
Confidence 347899999999999999985 799999999999999999999999998875 57899999999998766
Q ss_pred cCeEEEEeCC
Q psy13349 566 MDRLIVLDNG 575 (604)
Q Consensus 566 ~d~i~vl~~G 575 (604)
+|+|.|++.|
T Consensus 1027 ~~~i~v~~~~ 1036 (1042)
T TIGR00618 1027 PHRILVKKTN 1036 (1042)
T ss_pred CCEEEEEECC
Confidence 7999999764
No 443
>PRK06793 fliI flagellum-specific ATP synthase; Validated
Probab=99.12 E-value=3.8e-10 Score=120.88 Aligned_cols=165 Identities=21% Similarity=0.232 Sum_probs=117.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++-++++..|..+..+++++ |++.+|++++|+|++|+|||||+++|+|...|+.|.|.+.|..-
T Consensus 130 ~~~r~~i~~~l~TGiraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGerg-------------- 194 (432)
T PRK06793 130 AFEREEITDVFETGIKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGERG-------------- 194 (432)
T ss_pred chheechhhccCCCCEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCCc--------------
Confidence 466677777776556688885 99999999999999999999999999999999888777666332
Q ss_pred EcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCC-ccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 439 VTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 439 v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~-~t~v~e~g~~LSgGq~QrialARall 517 (604)
.+++|.+.. .++.. |+ .|.+=..-.+-|.|+|+|.+.+.+.+
T Consensus 195 ---------~ev~e~~~~------------~l~~~----------------gl~~tvvv~~tsd~s~~~r~ra~~~a~~i 237 (432)
T PRK06793 195 ---------REVKDFIRK------------ELGEE----------------GMRKSVVVVATSDESHLMQLRAAKLATSI 237 (432)
T ss_pred ---------ccHHHHHHH------------Hhhhc----------------ccceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 123333210 00000 11 12222334678999999999999988
Q ss_pred -------cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 518 -------KNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 518 -------~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
.++-++++||+|...|+. ++|...+.+.. .+.|..+-||-...++++-+ .++|.|...
T Consensus 238 AEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~~L~ERag~---~~~GSiT~~ 303 (432)
T PRK06793 238 AEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMKKLLERSGK---TQKGSITGI 303 (432)
T ss_pred HHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccchhHHHHhcc---CCCcceEEE
Confidence 688899999999999997 45555554443 46788888886556666655 368887543
No 444
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=99.12 E-value=4.5e-10 Score=108.00 Aligned_cols=84 Identities=19% Similarity=0.212 Sum_probs=63.6
Q ss_pred CCccccccCCCCCChhHHH------HHHHHHHHccCCCeEEEeccCCCCC---HHHHHHHHHHHHHHh-CCcEEEEEccC
Q psy13349 490 GYDAHVGEHGIKLSGGQRQ------RIAIARVILKNAPILLLDEATSALD---SEAEIAIQKSLYNLM-KGKTVIAIAHR 559 (604)
Q Consensus 490 g~~t~v~e~g~~LSgGq~Q------rialARall~~p~ililDE~ts~LD---~~~~~~i~~~i~~~~-~~~t~i~itH~ 559 (604)
|...........+|+||+| +...+.+.-.+|+++++||||+.+| +.....+.+.++.+. .+.|+|+++|.
T Consensus 60 g~l~~~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~~~ 139 (187)
T cd01124 60 GLLAIVDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTSEQ 139 (187)
T ss_pred CCeEEEecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEecc
Confidence 4444555666788999998 4444444556899999999999999 777777777776654 47899999998
Q ss_pred hhH---------Hh-hcCeEEEEe
Q psy13349 560 LST---------IS-AMDRLIVLD 573 (604)
Q Consensus 560 l~~---------~~-~~d~i~vl~ 573 (604)
... ++ .||.|+.|+
T Consensus 140 ~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 140 SGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccCCCcccCcCceeEeeeEEEEEE
Confidence 764 33 489999997
No 445
>PRK03918 chromosome segregation protein; Provisional
Probab=99.10 E-value=1.7e-10 Score=137.19 Aligned_cols=76 Identities=32% Similarity=0.394 Sum_probs=67.4
Q ss_pred CCCCChhHHH------HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEE
Q psy13349 499 GIKLSGGQRQ------RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIV 571 (604)
Q Consensus 499 g~~LSgGq~Q------rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~v 571 (604)
...|||||+| |+||||+++.+|+++||||||++||+.....+.+.|.... .+.|+|+|||+......||++++
T Consensus 786 ~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~~~~~d~~~~ 865 (880)
T PRK03918 786 LTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEELKDAADYVIR 865 (880)
T ss_pred hhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHhCCeEEE
Confidence 3579999999 5666778999999999999999999999999999998764 35799999999998888999999
Q ss_pred EeC
Q psy13349 572 LDN 574 (604)
Q Consensus 572 l~~ 574 (604)
|+.
T Consensus 866 l~~ 868 (880)
T PRK03918 866 VSL 868 (880)
T ss_pred EEe
Confidence 973
No 446
>TIGR03238 dnd_assoc_3 dnd system-associated protein 3. cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A.
Probab=99.10 E-value=5.6e-11 Score=126.87 Aligned_cols=67 Identities=18% Similarity=0.255 Sum_probs=56.1
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhccceEEcccC
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG-EILIDGQNISNVSQESLREQIGMVTQDT 443 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~I~i~g~~~~~~~~~~~r~~i~~v~Q~~ 443 (604)
++|++||+++++||+++|+||||||||||++ .|+..|++| +|.++|.++...+..++. ..-+|+|+.
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai~-~LR~VFQ~f 87 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAME-TLDEIFDGF 87 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHHH-HHHHHHHhh
Confidence 5899999999999999999999999999999 778888888 799999999886654432 122788753
No 447
>PRK13830 conjugal transfer protein TrbE; Provisional
Probab=99.06 E-value=2e-09 Score=125.72 Aligned_cols=67 Identities=24% Similarity=0.271 Sum_probs=58.3
Q ss_pred HccCCCeEEEeccCCCC-CHHHHHHHHHHHHHHh-CCcEEEEEccChhHH----------hhcCeEEEEeCCEEeEecC
Q psy13349 516 ILKNAPILLLDEATSAL-DSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI----------SAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 516 ll~~p~ililDE~ts~L-D~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~----------~~~d~i~vl~~G~iv~~g~ 582 (604)
+..+|+++++|||+.+| |+...+.+.+.+++.. .+.+++++||+++.+ +.||..++|.+|++.+.|.
T Consensus 649 l~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~~~~ 727 (818)
T PRK13830 649 LTGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAAREPGT 727 (818)
T ss_pred cCCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccccch
Confidence 35799999999999999 6899999999998764 588999999999876 4699999999999877664
No 448
>PF06472 ABC_membrane_2: ABC transporter transmembrane region 2; InterPro: IPR010509 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This region covers the N terminus and first two membrane regions of a small family of ABC transporters. Mutations in this domain in P28288 from SWISSPROT are believed responsible for Zellweger Syndrome-2 []; mutations in P33897 from SWISSPROT are responsible for recessive X-linked adrenoleukodystrophy []. A Saccharomyces cerevisiae protein containing this domain is involved in the import of long-chain fatty acids [].; GO: 0006810 transport, 0016020 membrane
Probab=99.05 E-value=1.2e-06 Score=90.16 Aligned_cols=230 Identities=10% Similarity=0.138 Sum_probs=156.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q psy13349 39 ILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQVLSGNFPMLLRW 118 (604)
Q Consensus 39 l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 118 (604)
+...+++.++.+.++.......+.+.|++...+...++. .+...++..+..+++.....++. ..+..+.-..+-.
T Consensus 29 l~~ll~l~l~~~~lsv~~~~~~g~~~~aL~~~d~~~f~~----~l~~~~~l~~~~~~l~~~~~yl~-~~L~l~wR~~Lt~ 103 (281)
T PF06472_consen 29 LLVLLLLLLARVYLSVRINFWNGDFYNALQQKDLQAFWR----LLLLFLLLAIASALLNSILKYLR-QRLALRWREWLTR 103 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Confidence 333445566677777888888899999887655433321 11111111111122333333221 1222233333444
Q ss_pred HHHHHHHcCCccccccc----chhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q psy13349 119 NFHRLILNQSINFFQEE----FAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLF-PFVIWISA 193 (604)
Q Consensus 119 ~l~~~ll~~~~~~f~~~----~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l-v~l~~~~l 193 (604)
.+.++.++-. .||+-. ....-=+|+++|++...+........++..++.++.....+...+..+++ ++++..++
T Consensus 104 ~~~~~yl~~~-~yY~l~~~~~~idNpDQRIteDi~~f~~~~~~l~~~~~~~~~~l~~f~~~L~~~~g~~~~~~~~~y~~~ 182 (281)
T PF06472_consen 104 HLHDRYLSNR-TYYRLNNLDGRIDNPDQRITEDIRKFTESSLSLFLGLLKPILDLISFSVILWSISGWLGPWAALIYAIL 182 (281)
T ss_pred HHHHHHcCCc-hhHhhhccccccccHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 4444444444 555522 23455569999999988888888888888888888777777777777766 56666677
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 194 YIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHL 273 (604)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 273 (604)
..++..++++++.+...+.++..+++........++.+.|-.++.|+.|.++..+.+++..+...+..+.....+.+..+
T Consensus 183 ~t~~~~~ig~~l~~l~~~~q~~Ea~fR~~l~r~r~naE~IA~~~Ge~~E~~~l~~~f~~l~~~~~~~~~~~~~~~~~~~~ 262 (281)
T PF06472_consen 183 GTLITHWIGPPLGRLNAEQQRLEADFRYALVRLRENAESIAFYRGESRERRRLDRRFDALIDNWRRLIRRRLRLGFFTNF 262 (281)
T ss_pred HHHHHHHHhhhhHHHHHHHHHhhchHHHHHHHHHHhHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888999999999999999999999999999999999999999999999999998888877777777766666666555
Q ss_pred H
Q psy13349 274 L 274 (604)
Q Consensus 274 ~ 274 (604)
.
T Consensus 263 ~ 263 (281)
T PF06472_consen 263 Y 263 (281)
T ss_pred H
Confidence 5
No 449
>cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=99.05 E-value=1.2e-09 Score=107.58 Aligned_cols=138 Identities=20% Similarity=0.246 Sum_probs=84.8
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY-GEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SI 450 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti 450 (604)
+.+-+|++|+.++|++++|.||||+||||+++.+....-..+ |- .+.. + +..++++ ..+|.. ..
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~------~vpa---~--~~~i~~~---~~i~~~~~~ 82 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGM------DVPA---K--SMRLSLV---DRIFTRIGA 82 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCC------ccCc---c--ccEeccc---cEEEEecCc
Confidence 468899999999999999999999999999999876532111 11 0000 0 0011111 112211 22
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC
Q psy13349 451 RDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530 (604)
Q Consensus 451 ~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts 530 (604)
.||+..|.. .|- .|-+|++-.-....+|++++||||.+
T Consensus 83 ~d~~~~~~S-----------------tF~-------------------------~e~~~~~~il~~~~~~sLvLlDE~~~ 120 (218)
T cd03286 83 RDDIMKGES-----------------TFM-------------------------VELSETANILRHATPDSLVILDELGR 120 (218)
T ss_pred ccccccCcc-----------------hHH-------------------------HHHHHHHHHHHhCCCCeEEEEecccC
Confidence 233322211 010 12222222222235789999999999
Q ss_pred CCCHHHHHHHHHH-HHHHhC--CcEEEEEccChhHHhhc
Q psy13349 531 ALDSEAEIAIQKS-LYNLMK--GKTVIAIAHRLSTISAM 566 (604)
Q Consensus 531 ~LD~~~~~~i~~~-i~~~~~--~~t~i~itH~l~~~~~~ 566 (604)
++|+.....+... ++.+.+ +.+++++||..+.....
T Consensus 121 Gt~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~ 159 (218)
T cd03286 121 GTSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEF 159 (218)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHh
Confidence 9999998888777 454443 78999999999876653
No 450
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=99.04 E-value=2.7e-10 Score=139.26 Aligned_cols=75 Identities=29% Similarity=0.394 Sum_probs=68.5
Q ss_pred CCCCCChhHHHHHHHHHHH----ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEE
Q psy13349 498 HGIKLSGGQRQRIAIARVI----LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572 (604)
Q Consensus 498 ~g~~LSgGq~QrialARal----l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl 572 (604)
....|||||+||++|||++ +++||++||||||++||+.+...+.+.|....++.++|+|||+++.+..||+++.+
T Consensus 1086 ~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~~~~d~~~~~ 1164 (1179)
T TIGR02168 1086 NLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTMEVADQLYGV 1164 (1179)
T ss_pred cccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHHHHhhhHeee
Confidence 4468999999999999998 47789999999999999999999999998887778999999999999999999765
No 451
>PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A.
Probab=99.01 E-value=7.3e-10 Score=110.52 Aligned_cols=64 Identities=25% Similarity=0.361 Sum_probs=53.3
Q ss_pred CCCChhHHHHHHHHHHHccCC---CeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHH
Q psy13349 500 IKLSGGQRQRIAIARVILKNA---PILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTI 563 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p---~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~ 563 (604)
..+|.|++|.+.++-+++..+ .++++|||-++|.|...+.+.+.+.+..+ +.-+|++||.+..+
T Consensus 235 ~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 235 SSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp S---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred ccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 356999999999999888876 89999999999999999999999987765 78899999998764
No 452
>PF13748 ABC_membrane_3: ABC transporter transmembrane region
Probab=99.00 E-value=7.7e-07 Score=86.71 Aligned_cols=173 Identities=13% Similarity=0.086 Sum_probs=122.1
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 29 LKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQVL 108 (604)
Q Consensus 29 ~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (604)
+...|+|++++.....+.++.+++-++.|++.|+.||.+.+++.. .++.+..+.++..+....++.+.
T Consensus 2 k~I~r~~~~kl~~T~~Lv~aEn~l~l~yPl~~G~AIn~ll~g~~~--------~~~~~~~~~l~~~~igaaRR~~D---- 69 (237)
T PF13748_consen 2 KAIARRHRKKLALTFLLVLAENVLLLLYPLFIGFAINALLNGDVW--------QALMYAALVLLMWAIGAARRIYD---- 69 (237)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHH--------HHHHHHHHHHHHHHHhhhhHHHh----
Confidence 345688999999999999999999999999999999999876532 12222222222234444444332
Q ss_pred HhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 109 SGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFV 188 (604)
Q Consensus 109 ~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~lv~l 188 (604)
.|.-.+++.++-..+.-.. -.+..+.+.+..|+ +-+.++-||+..-+|.++.+++.+++.+++++.++.++++..+
T Consensus 70 -TRvf~rIy~~la~~vi~~q--r~~~~~~S~i~ARv-~lsRE~VdFfE~~lP~lits~vsivga~vmLl~~e~~~g~~~l 145 (237)
T PF13748_consen 70 -TRVFSRIYAELAVPVILSQ--RQQGLSVSTIAARV-ALSREFVDFFEQHLPTLITSVVSIVGAAVMLLVFEFWLGLACL 145 (237)
T ss_pred -hHHHHHHHHHHhHHHHHHH--HHhCCChhHHHHHH-HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333344444443321111 12445778888998 3467888999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 189 IWISAYIYTLIYFIPRLNKTAESQATARS 217 (604)
Q Consensus 189 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 217 (604)
+.+.+..++...|.++..+...+.+++.+
T Consensus 146 ~~l~~~~~i~~~f~~~~~~L~~~LNnrlE 174 (237)
T PF13748_consen 146 LILALFLLILPRFARRNYRLYRRLNNRLE 174 (237)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 88888888777777777766655554443
No 453
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.98 E-value=3.4e-09 Score=98.75 Aligned_cols=129 Identities=17% Similarity=0.097 Sum_probs=78.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHH
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELF 467 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~ 467 (604)
.++|.||+|+||||+++.+++...+..|.+.+.+ ++...- ...++.....
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~-------------------~e~~~~--~~~~~~~~~~--------- 50 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIATKGGKVVYVD-------------------IEEEIE--ELTERLIGES--------- 50 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEE-------------------CCcchH--HHHHHHhhhh---------
Confidence 3689999999999999999998877556554433 221100 0111110000
Q ss_pred HHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCH----------HHH
Q psy13349 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS----------EAE 537 (604)
Q Consensus 468 ~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~----------~~~ 537 (604)
.. ..+ +-...+.......+.++.++++.+++.-.+|+++++||+++-++. ...
T Consensus 51 -------~~----~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~ 113 (165)
T cd01120 51 -------LK----GAL------DNLIIVFATADDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELD 113 (165)
T ss_pred -------hc----ccc------ccEEEEEcCCCCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHH
Confidence 00 000 111122222234456666788999999999999999999965444 434
Q ss_pred HHHHHHHHHHh-CCcEEEEEccChhHH
Q psy13349 538 IAIQKSLYNLM-KGKTVIAIAHRLSTI 563 (604)
Q Consensus 538 ~~i~~~i~~~~-~~~t~i~itH~l~~~ 563 (604)
+.+.+...... .+.|+++++|..+..
T Consensus 114 ~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 114 EELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred HHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 55555444443 388999999988644
No 454
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=98.96 E-value=1.2e-09 Score=133.72 Aligned_cols=75 Identities=23% Similarity=0.275 Sum_probs=69.0
Q ss_pred CCCChhHHHHHHHHHHHc----cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 500 IKLSGGQRQRIAIARVIL----KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 500 ~~LSgGq~QrialARall----~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
..||||||++++||++|. ++||+++||||+++||+.....+.+.|.+..++.++|+|||+..++..||+++.+..
T Consensus 1073 ~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~~~~~d~~~~~~~ 1151 (1164)
T TIGR02169 1073 EAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPMIEYADRAIGVTM 1151 (1164)
T ss_pred hhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHhcceeEeEEE
Confidence 479999999999999997 478999999999999999999999999888777889999999999999999987743
No 455
>PRK11098 microcin B17 transporter; Reviewed
Probab=98.95 E-value=1.2e-05 Score=85.84 Aligned_cols=186 Identities=10% Similarity=0.079 Sum_probs=117.7
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 141 ATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY-------------MLFPFVIWISAYIYTLIYFIPRLNK 207 (604)
Q Consensus 141 ~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~-------------l~lv~l~~~~l~~~~~~~~~~~~~~ 207 (604)
=+|+.+|++...+........++.+++.++..+.++..+|.. +..++++...+...+..++++++.+
T Consensus 191 DQRIqEDi~~F~~~tl~L~~~li~si~tLisF~~ILW~LS~~l~~~~i~G~ipg~Lv~~aiiyai~GT~it~~vG~~L~~ 270 (409)
T PRK11098 191 AQRVQEDTMRFASTLENLGVSFINAIMTLIAFLPVLVTLSAHVPELPIVGHIPYGLVIAAIVWSLFGTGLLAVVGIKLPG 270 (409)
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccCCCchHHHHHHHHHHHHHHHHHHHHcccchh
Confidence 357777777776666666666777777887777888777765 3444455556666667788999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 208 TAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCAL 287 (604)
Q Consensus 208 ~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~ 287 (604)
...+.++..+++...+.-.=++. |+.+.++.++..++..+...+........+.+......+..+.-.++.+
T Consensus 271 Lnf~qqr~EAdFR~~LVrvrena--------E~~E~~~L~~~F~~V~~N~~rl~~~~~~l~~f~~~y~~~~~i~P~iv~a 342 (409)
T PRK11098 271 LEFKNQRVEAAYRKELVYGEDDA--------DRATPPTVRELFSNVRKNYFRLYFHYMYFNIARILYLQVDNVFGLFLLF 342 (409)
T ss_pred hHHHHHHHHHHHHHHHhHhhhhh--------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888776554322222 2333444444444444444444333333444444444444444444556
Q ss_pred HHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 288 FLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDG 334 (604)
Q Consensus 288 ~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (604)
-....|+++.|.+......+.++.+.+++++....++.+-.+..++.
T Consensus 343 P~y~aG~ItlG~l~Q~~~AF~~V~~als~~v~sy~~lael~A~~~RL 389 (409)
T PRK11098 343 PSIVAGTITLGLMTQITNVFGQVRGSFQYLINSWTTIVELLSIYKRL 389 (409)
T ss_pred HHHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66789999999999999988888888888777665554444444433
No 456
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=98.94 E-value=1.7e-09 Score=105.34 Aligned_cols=56 Identities=21% Similarity=0.309 Sum_probs=43.4
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEE
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl 572 (604)
+++++|..+|+++++||+. |+++...+.+ ....+++++.++|..+.....||++.+
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~l~---~a~~G~~v~~t~Ha~~~~~~~~Rl~~l 121 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLALT---AAETGHLVMSTLHTNSAAKTIDRIIDV 121 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHHHH---HHHcCCEEEEEecCCcHHHHHhHHHhh
Confidence 5889999999999999996 6655444333 334588999999999887777887665
No 457
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.93 E-value=5e-08 Score=87.61 Aligned_cols=117 Identities=36% Similarity=0.400 Sum_probs=82.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCH
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKY-GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASE 463 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~ 463 (604)
+|..+.|+||+||||||+++.+++...... +-+.++.............
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------ 50 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLL------------------------------ 50 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHH------------------------------
Confidence 478899999999999999999999887664 4555555433222111111
Q ss_pred HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHH-
Q psy13349 464 CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK- 542 (604)
Q Consensus 464 ~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~- 542 (604)
.....+......+++.++..+++|-..+|+++++||+....+.........
T Consensus 51 ----------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~ 102 (148)
T smart00382 51 ----------------------------LIIVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLL 102 (148)
T ss_pred ----------------------------hhhhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhh
Confidence 000112234677888899999999988899999999999999998876653
Q ss_pred ------HHHHHhCCcEEEEEccC
Q psy13349 543 ------SLYNLMKGKTVIAIAHR 559 (604)
Q Consensus 543 ------~i~~~~~~~t~i~itH~ 559 (604)
.......+..+|+++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 103 EELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hhhHHHHHHHhcCCCEEEEEeCC
Confidence 22223356788888884
No 458
>PRK12369 putative transporter; Reviewed
Probab=98.92 E-value=1.8e-05 Score=82.65 Aligned_cols=278 Identities=7% Similarity=0.018 Sum_probs=150.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccC--CchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHH
Q psy13349 43 IFFTTLTGTFEALLFAAMGKIIDLLSNIK--PSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKHQVLSGNFPMLLRWN 119 (604)
Q Consensus 43 ~~l~~~~~~~~~~~~~~~~~~id~~~~~~--~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~~ 119 (604)
+++.+....+.+......+.+.|++.... +...-...++..+....++++. .++..+..+ +.+++..+.|..
T Consensus 23 i~l~l~~v~~~v~~n~w~~~fy~aL~~~~~~~~~~~~~~f~~~l~~f~~~~~~~v~~~v~~~~-----~~~~l~i~WR~w 97 (326)
T PRK12369 23 LLSLWYQVSLNVAINEWYGDFYDLLQKAKIEPNNHTAGDFWASILSFLAIAMPYVLIATVVDY-----FASHYAFRWREA 97 (326)
T ss_pred HHHHHHHHHHhhhhhHHhHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHH
Confidence 44555556666677777788888876431 0000000111111111111111 122222222 223344455554
Q ss_pred HHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHH
Q psy13349 120 FHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYM------------LFPF 187 (604)
Q Consensus 120 l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l------------~lv~ 187 (604)
+-+++++.=+..-+ ....-=.|+.+|++...+........++.+++.++..+.++..+|..+ ..++
T Consensus 98 LT~~~l~~wl~~~~--~iDNPDQRI~EDi~~f~~~tl~l~~~~i~s~~~l~sF~~iLW~lS~~l~~~~~g~ipg~lv~~a 175 (326)
T PRK12369 98 MTFSYLKFWRNKRD--NIEGSSQRIQEDTYRFAKIMESLGLSFLRAIMTLIAFIPILWGLSDGVSLPFLKDIPGSLVWIA 175 (326)
T ss_pred HHHHHHHHHhcCCC--CCCCccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCceeeecCCCcchHHHHH
Confidence 44444432111111 111112688888888877777777777778888887777777766433 3333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 188 VIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSF 267 (604)
Q Consensus 188 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (604)
++...+..++..++++++.+...+.++..++....+.-.=++.+. + .+.+.+++.+.+..+...+..+.....
T Consensus 176 iiyai~gt~it~~iGr~L~~ln~~qq~~EAdFR~~Lvrvre~ae~---~----~E~~~l~~~f~~v~~n~~~~~~~~~~l 248 (326)
T PRK12369 176 LLISLGGLVISWFVGIKLPGLEYNNQKVEAAFRKELVYAEDDKKN---Y----AKPETLIELFTGLRFNYFRLFLHYGYF 248 (326)
T ss_pred HHHHHHHHHHHHHHcCcCchhhHHHHHHHHHHHHHHHhhccchhh---h----hhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 445555556677888888888888877777776554321111111 1 222344444444444433333333344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 268 EIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDG 334 (604)
Q Consensus 268 ~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 334 (604)
+.+......+..++-..+.+.....|.++.|.+......+.++.+.+++++..+.++.+-.+.+++.
T Consensus 249 ~~~~~~y~~~~~i~p~li~aP~y~sg~i~lG~l~Q~~~AF~~v~~als~~v~~y~~la~~~A~~~RL 315 (326)
T PRK12369 249 NIWLISFSQMMVIVPYLIMAPGLFAGVITLGVLMQISNAFSQVRSSFSVFIRNWTTITELRSIYKRL 315 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444444444444555667789999999999999988888888787777665554444434333
No 459
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=98.89 E-value=4.6e-09 Score=126.00 Aligned_cols=78 Identities=27% Similarity=0.267 Sum_probs=67.6
Q ss_pred cCCCCCChhHHHHHHHHHHHcc--------CCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhc-
Q psy13349 497 EHGIKLSGGQRQRIAIARVILK--------NAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM- 566 (604)
Q Consensus 497 e~g~~LSgGq~QrialARall~--------~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~- 566 (604)
....+|||||+|+++|||||.. +|+++++||||++||+.+...+++.|..+. .|+||++|||........
T Consensus 945 r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i~ 1024 (1047)
T PRK10246 945 RDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERIP 1024 (1047)
T ss_pred CCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhcc
Confidence 3457899999999999999995 899999999999999999999999998875 589999999977776664
Q ss_pred CeEEEEeC
Q psy13349 567 DRLIVLDN 574 (604)
Q Consensus 567 d~i~vl~~ 574 (604)
.+|.|-..
T Consensus 1025 ~qi~V~k~ 1032 (1047)
T PRK10246 1025 VQIKVKKI 1032 (1047)
T ss_pred ceEEEEEC
Confidence 66666654
No 460
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=98.88 E-value=9.5e-10 Score=125.26 Aligned_cols=172 Identities=9% Similarity=0.046 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 208 TAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYA-----RFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGT 282 (604)
Q Consensus 208 ~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 282 (604)
.........+...+.+.|.+.++.+||..+.++.....| .....+..+...+..........+...+......++
T Consensus 31 ~~~~~~~~~~~~~~~v~Ev~~~~~tIK~~~~e~~~~~~~~~~~~~~l~~~l~~~~v~~~~~~~~~~~~~~~i~~~~~~~i 110 (644)
T PRK10733 31 KVDYSTFLQEVNQDQVREARINGREINVTKKDSNRYTTYIPVNDPKLLDNLLTKNVKVVGEPPEEPSLLASIFISWFPML 110 (644)
T ss_pred cCCHHHHHHHHHcCCeEEEEEeCCEEEEEEcCCceEEEeCCCCCHHHHHHHHHcCCeEEecCcccchHHHHHHHHHHHHH
Confidence 333344444566778888999999999998877654444 333344444433333333333344444455556677
Q ss_pred HHHHHHHHhhCcccHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcccccccccCce
Q psy13349 283 TGCALFLWTKGILGIG---AVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGK 359 (604)
Q Consensus 283 ~~~g~~lv~~g~lt~G---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 359 (604)
+++|++++..|.++.| .+++|..+...+..+ ..+.. .+..+.......+.+.+........
T Consensus 111 l~ig~~~v~~g~mt~G~~~~l~af~~~~~~~~~~-~~~~~----~~~di~g~~~~~~~l~~i~~~~~~~----------- 174 (644)
T PRK10733 111 LLIGVWIFFMRQMQGGGGKGAMSFGKSKARMLTE-DQIKT----TFADVAGCDEAKEEVAELVEYLREP----------- 174 (644)
T ss_pred HHHHHHHHHHhhhcCCCCceeEEeccccccccCc-hhhhC----cHHHHcCHHHHHHHHHHHHHHhhCH-----------
Confidence 8899999999999988 566655443333222 11111 1111111122222221111100000
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
...+++...+++| +.++||+|+||||+++.+++...
T Consensus 175 --------------~~~~~~~~~~~~g--ill~G~~G~GKt~~~~~~a~~~~ 210 (644)
T PRK10733 175 --------------SRFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAK 210 (644)
T ss_pred --------------HHHHhcCCCCCCc--EEEECCCCCCHHHHHHHHHHHcC
Confidence 0011222356666 99999999999999999988553
No 461
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.88 E-value=5.4e-09 Score=102.24 Aligned_cols=69 Identities=36% Similarity=0.435 Sum_probs=58.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC------------CCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHH
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYD------------IKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIR 451 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~------------~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 451 (604)
++|++++|+||||||||||+++|++.++ |..|+ ++|.++..++.+++++. +.|+.+++.+++.
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~~~~~~~~~~tr~p~~ge--~~g~~~~~~~~~~~~~~---~~~~~~~~~~~~~ 77 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVDYFFVSKEEFEEM---IENGEFLEWAEVF 77 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCccceeccCccccCCCCCC--cCCCeeEEcCHHHHHHH---HHcCCcEEEEEEC
Confidence 5899999999999999999999999986 77888 58999888888887765 3577788888998
Q ss_pred HHHhcCC
Q psy13349 452 DNILYGR 458 (604)
Q Consensus 452 eNi~~g~ 458 (604)
+| .+|.
T Consensus 78 ~~-~y~~ 83 (205)
T PRK00300 78 GN-YYGT 83 (205)
T ss_pred Cc-cccC
Confidence 88 3554
No 462
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=98.87 E-value=2.5e-08 Score=99.83 Aligned_cols=74 Identities=18% Similarity=0.201 Sum_probs=53.2
Q ss_pred CCChhHHHHHHHHHHHcc--CCCeEEEeccCCCCC---HHHHHHHHHHHHHHh-CCcEEEEEccChhH-------Hh-hc
Q psy13349 501 KLSGGQRQRIAIARVILK--NAPILLLDEATSALD---SEAEIAIQKSLYNLM-KGKTVIAIAHRLST-------IS-AM 566 (604)
Q Consensus 501 ~LSgGq~QrialARall~--~p~ililDE~ts~LD---~~~~~~i~~~i~~~~-~~~t~i~itH~l~~-------~~-~~ 566 (604)
..|.++.+.+..++..+. +|+++++||||+.+| ......+.+.++.+. .++|+++++|.... +. .+
T Consensus 100 ~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l~ 179 (234)
T PRK06067 100 WNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSIC 179 (234)
T ss_pred cCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhhe
Confidence 456788999999999998 899999999996544 444445544454433 57899999997643 22 25
Q ss_pred CeEEEEeC
Q psy13349 567 DRLIVLDN 574 (604)
Q Consensus 567 d~i~vl~~ 574 (604)
|-++.|+.
T Consensus 180 DgvI~L~~ 187 (234)
T PRK06067 180 DVYLKLRA 187 (234)
T ss_pred EEEEEEEe
Confidence 77777763
No 463
>COG3910 Predicted ATPase [General function prediction only]
Probab=98.85 E-value=4e-08 Score=91.87 Aligned_cols=84 Identities=17% Similarity=0.238 Sum_probs=66.2
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVA 578 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv 578 (604)
.-|.||-=-=-+.|.+- +.-|+|||||-|+|.|.-+-.+...++++. .|.-+|+.||.+=.+.. --+|+.++.+-+-
T Consensus 129 ~~SHGEsf~~i~~~rf~-~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~~~g~~ 207 (233)
T COG3910 129 HMSHGESFLAIFHNRFN-GQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEISESGIE 207 (233)
T ss_pred hhccchHHHHHHHHHhc-cCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEecCCcc
Confidence 45999877666666665 457999999999999999999999998876 47889999999887766 4889999887643
Q ss_pred EecChhHH
Q psy13349 579 EEGSHLDL 586 (604)
Q Consensus 579 ~~g~~~~l 586 (604)
+-+++|.
T Consensus 208 -~~~fe~t 214 (233)
T COG3910 208 -ERDFEET 214 (233)
T ss_pred -ccchHHH
Confidence 3345443
No 464
>PRK02224 chromosome segregation protein; Provisional
Probab=98.84 E-value=5.8e-09 Score=124.02 Aligned_cols=76 Identities=30% Similarity=0.500 Sum_probs=66.8
Q ss_pred CCCChhHHH------HHHHHHHHccC-----C-CeEEEeccCCCCCHHHHHHHHHHHHHHhC-C-cEEEEEccChhHHhh
Q psy13349 500 IKLSGGQRQ------RIAIARVILKN-----A-PILLLDEATSALDSEAEIAIQKSLYNLMK-G-KTVIAIAHRLSTISA 565 (604)
Q Consensus 500 ~~LSgGq~Q------rialARall~~-----p-~ililDE~ts~LD~~~~~~i~~~i~~~~~-~-~t~i~itH~l~~~~~ 565 (604)
..||||||| |+|+||++..+ | +++||||||++||+.....+.+.|..+.. + .++|+|||+...+..
T Consensus 780 ~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~~~ 859 (880)
T PRK02224 780 EQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELVGA 859 (880)
T ss_pred hhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHHHh
Confidence 489999999 99999999864 2 67999999999999999999998887653 3 489999999999999
Q ss_pred cCeEEEEeCC
Q psy13349 566 MDRLIVLDNG 575 (604)
Q Consensus 566 ~d~i~vl~~G 575 (604)
||+++++.+.
T Consensus 860 ad~~~~~~~~ 869 (880)
T PRK02224 860 ADDLVRVEKD 869 (880)
T ss_pred cCeeEEeecC
Confidence 9999999643
No 465
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=98.82 E-value=6.8e-09 Score=111.42 Aligned_cols=86 Identities=20% Similarity=0.327 Sum_probs=72.1
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC---CEeCCCCCHHH--
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID---GQNISNVSQES-- 431 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~---g~~~~~~~~~~-- 431 (604)
.+.++.++++..|..+..+++.++ ++.+||+++|+||||||||||+++|+++.+|+.|.|.+. |.++.++..+.
T Consensus 137 p~~~~r~~v~~~l~TGi~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l~ 215 (450)
T PRK06002 137 PPAMTRARVETGLRTGVRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTLA 215 (450)
T ss_pred CCCeEeecceEEcCCCcEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHHH
Confidence 356899999999977777999996 999999999999999999999999999999999999885 56665554332
Q ss_pred --HhccceEEcccC
Q psy13349 432 --LREQIGMVTQDT 443 (604)
Q Consensus 432 --~r~~i~~v~Q~~ 443 (604)
+++.|++|+|..
T Consensus 216 ~~r~rtI~vV~qsd 229 (450)
T PRK06002 216 DNLKKAVAVVATSD 229 (450)
T ss_pred HhhCCeEEEEEcCC
Confidence 336799999965
No 466
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=98.73 E-value=2.8e-08 Score=104.78 Aligned_cols=57 Identities=19% Similarity=0.328 Sum_probs=52.3
Q ss_pred CceEEEEEEEEEeCCCCceee-----------ecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13349 357 NGKIFFKNVSFSYDQKHLIIN-----------NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~-----------~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~ 413 (604)
.+.++|+||+|.||+++.+|+ |+++.|.+||.++||||+|||||||++.+.+.+...
T Consensus 128 ~~ri~Fe~LTf~YP~er~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~~n 195 (415)
T TIGR00767 128 KNRVLFENLTPLYPNERLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAITRN 195 (415)
T ss_pred CCCeEEEEeeecCCCccceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhccc
Confidence 467999999999998778897 999999999999999999999999999999988644
No 467
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=98.67 E-value=8.6e-09 Score=113.91 Aligned_cols=156 Identities=13% Similarity=0.188 Sum_probs=95.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH--hcCCCCCccEEEECCEeCCCCCHHHHhcc---ceEEcccCcCCcccHHHHHhc
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLL--LRFYDIKYGEILIDGQNISNVSQESLREQ---IGMVTQDTSLLHRSIRDNILY 456 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll--~~~~~~~~G~I~i~g~~~~~~~~~~~r~~---i~~v~Q~~~lf~~ti~eNi~~ 456 (604)
=+++|..+.|.|++|||||||..-. .|.-++.+.-+++... .++++++++ +++-.++.. -+ +++.+
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e----E~~~~l~~~~~~~G~~~~~~~-~~----g~l~~ 87 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE----ESPQDIIKNARSFGWDLQKLV-DE----GKLFI 87 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe----cCHHHHHHHHHHcCCCHHHHh-hc----CceEE
Confidence 4889999999999999999999765 4555445666777653 345555443 455444321 00 11111
Q ss_pred CCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH--HHHccCCCeEEEeccCCCCCH
Q psy13349 457 GRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA--RVILKNAPILLLDEATSALDS 534 (604)
Q Consensus 457 g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA--Rall~~p~ililDE~ts~LD~ 534 (604)
-.+. .........+..++++++..++. .+|+|++||+.|+ .++..+|+.. .
T Consensus 88 ~~~~-~~~~~~~~~~~~~l~~~l~~i~~----------------~ls~g~~qRVvIDSl~aL~~~~~~~----------~ 140 (484)
T TIGR02655 88 LDAS-PDPEGQDVVGGFDLSALIERINY----------------AIRKYKAKRVSIDSVTAVFQQYDAV----------S 140 (484)
T ss_pred EecC-chhccccccccCCHHHHHHHHHH----------------HHHHhCCcEEEEeehhHhhhhcCch----------H
Confidence 1110 00011112233344454444443 6899999999999 6776665443 4
Q ss_pred HHHHHHHHHHHHHh-CCcEEEEEccChhH--------H-h-hcCeEEEEe
Q psy13349 535 EAEIAIQKSLYNLM-KGKTVIAIAHRLST--------I-S-AMDRLIVLD 573 (604)
Q Consensus 535 ~~~~~i~~~i~~~~-~~~t~i~itH~l~~--------~-~-~~d~i~vl~ 573 (604)
...+.+.+.++.++ .++|+++++|+.+. + + .||.|+.|+
T Consensus 141 ~~r~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 141 VVRREIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 56667777776654 48999999998753 2 3 279999886
No 468
>PRK13891 conjugal transfer protein TrbE; Provisional
Probab=98.66 E-value=8e-07 Score=104.61 Aligned_cols=54 Identities=24% Similarity=0.263 Sum_probs=47.7
Q ss_pred HHHHHccCCCeEEEeccCCCC-CHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh
Q psy13349 512 IARVILKNAPILLLDEATSAL-DSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA 565 (604)
Q Consensus 512 lARall~~p~ililDE~ts~L-D~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~ 565 (604)
++|++..+|+++++|||+++| |+...+.+.+.++... .+.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 688999999999999999999 7899999999887764 58899999999987754
No 469
>PRK07196 fliI flagellum-specific ATP synthase; Validated
Probab=98.62 E-value=2.7e-08 Score=106.86 Aligned_cols=82 Identities=28% Similarity=0.376 Sum_probs=63.9
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc---EEEECCEeCCCCCHHHH------hccceEEcccC
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG---EILIDGQNISNVSQESL------REQIGMVTQDT 443 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G---~I~i~g~~~~~~~~~~~------r~~i~~v~Q~~ 443 (604)
..+++++ |++.+||+++|+|+||+|||||+++|+|+++|+.+ .|-.+|.++.++..+.+ |..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 4689999 99999999999999999999999999999998863 34445555554433333 45699999998
Q ss_pred cCCcc-cHHHHHh
Q psy13349 444 SLLHR-SIRDNIL 455 (604)
Q Consensus 444 ~lf~~-ti~eNi~ 455 (604)
..+.. ++.+|..
T Consensus 222 s~~~rl~a~e~a~ 234 (434)
T PRK07196 222 SPLMRIKATELCH 234 (434)
T ss_pred ChhhhHHHHHHHH
Confidence 77744 7777764
No 470
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=98.52 E-value=9.9e-08 Score=92.05 Aligned_cols=66 Identities=24% Similarity=0.290 Sum_probs=51.0
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccC
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDT 443 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~ 443 (604)
..+-+.+.+++|+.++|+||+||||||+++.|+++++|+.|.|.+.+.+-...+ .++.++++.|.+
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~---~~~~~~~~~~~~ 79 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLP---HPNWVRLVTRPG 79 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCC---CCCEEEEEEecC
Confidence 445567789999999999999999999999999999999999999774322221 234566666554
No 471
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=98.50 E-value=2.3e-07 Score=98.18 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=56.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC--Cc-cEEEECCEeCCCCCHHHHhccceEEcccCc-----CCcccHHHHHh
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDI--KY-GEILIDGQNISNVSQESLREQIGMVTQDTS-----LLHRSIRDNIL 455 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~--~~-G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~-----lf~~ti~eNi~ 455 (604)
++|..++|+||+||||||++++|++.+.+ .. +.|.....++ ++..+.++...+.++|... -|...+++++.
T Consensus 132 ~~~glilI~GpTGSGKTTtL~aLl~~i~~~~~~~~~Ivt~Edpi-E~~~~~~~~~~~~v~Q~~v~~~~~~~~~~l~~aLR 210 (358)
T TIGR02524 132 PQEGIVFITGATGSGKSTLLAAIIRELAEAPDSHRKILTYEAPI-EFVYDEIETISASVCQSEIPRHLNNFAAGVRNALR 210 (358)
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHHHhhcCCCCcEEEEeCCCc-eEeccccccccceeeeeeccccccCHHHHHHHHhc
Confidence 58999999999999999999999999843 33 4666555554 4666666666788888642 47778999888
Q ss_pred cCCCC
Q psy13349 456 YGRPD 460 (604)
Q Consensus 456 ~g~~~ 460 (604)
. +|+
T Consensus 211 ~-~Pd 214 (358)
T TIGR02524 211 R-KPH 214 (358)
T ss_pred c-CCC
Confidence 6 454
No 472
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=98.50 E-value=3e-07 Score=97.30 Aligned_cols=121 Identities=22% Similarity=0.321 Sum_probs=76.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCC
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYDI-KYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDA 461 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~ 461 (604)
.+++..+.|.||+||||||+++.+.+.+++ .+|+|..-..++.-. .....+.+.|
T Consensus 119 ~~~~g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~----~~~~~~~i~q-------------------- 174 (343)
T TIGR01420 119 ERPRGLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYV----HRNKRSLINQ-------------------- 174 (343)
T ss_pred hhcCcEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhh----ccCccceEEc--------------------
Confidence 457899999999999999999999997764 456665543221100 0000000000
Q ss_pred CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHH
Q psy13349 462 SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541 (604)
Q Consensus 462 ~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~ 541 (604)
..+|..+.+ -.=++++||-.+||++++||+. |+++.....
T Consensus 175 -------------------------------~evg~~~~~------~~~~l~~~lr~~pd~i~vgEir---d~~~~~~~l 214 (343)
T TIGR01420 175 -------------------------------REVGLDTLS------FANALRAALREDPDVILIGEMR---DLETVELAL 214 (343)
T ss_pred -------------------------------cccCCCCcC------HHHHHHHhhccCCCEEEEeCCC---CHHHHHHHH
Confidence 001111111 1235778899999999999997 888776555
Q ss_pred HHHHHHhCCcEEEEEccChhHHhhcCeEE
Q psy13349 542 KSLYNLMKGKTVIAIAHRLSTISAMDRLI 570 (604)
Q Consensus 542 ~~i~~~~~~~t~i~itH~l~~~~~~d~i~ 570 (604)
++ ...|++++.+.|..+.....+|+.
T Consensus 215 ~a---a~tGh~v~~T~Ha~~~~~~~~Rl~ 240 (343)
T TIGR01420 215 TA---AETGHLVFGTLHTNSAAQTIERII 240 (343)
T ss_pred HH---HHcCCcEEEEEcCCCHHHHHHHHH
Confidence 44 345889999999976654444443
No 473
>TIGR01026 fliI_yscN ATPase FliI/YscN family. This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins.
Probab=98.46 E-value=1.3e-06 Score=94.58 Aligned_cols=182 Identities=20% Similarity=0.233 Sum_probs=107.9
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHH
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIR 451 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 451 (604)
+.++++++ +++.+||+++|+|+||+|||||+++|+|..+|+.|.+...|..-+++. ++.+. +..+...
T Consensus 150 Gi~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~--~~~~~---------~~~~~~l 217 (440)
T TIGR01026 150 GVRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVR--EFIEH---------DLGEEGL 217 (440)
T ss_pred eeeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHH--HHHHH---------Hhccccc
Confidence 45689999 999999999999999999999999999999999888777665443321 11100 0000000
Q ss_pred HHH-hc-CCCC-CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccc-cCCCCCChhHHHHHHHHHHHccCCCeEEEec
Q psy13349 452 DNI-LY-GRPD-ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVG-EHGIKLSGGQRQRIAIARVILKNAPILLLDE 527 (604)
Q Consensus 452 eNi-~~-g~~~-~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~-e~g~~LSgGq~QrialARall~~p~ililDE 527 (604)
++- .+ ...+ ..-++...+.-..-..++... .|.|-.+= +.-.++- |.|| .++ +.+.|
T Consensus 218 ~~tvvv~~~~d~~p~~r~~~~~~a~t~AE~frd-------~G~~Vll~~DslTr~A--~A~R-Eis---------l~~ge 278 (440)
T TIGR01026 218 KRSVVVVATSDQSPLLRLKGAYVATAIAEYFRD-------QGKDVLLLMDSVTRFA--MAQR-EIG---------LAAGE 278 (440)
T ss_pred ceEEEEEECCCCCHHHHHHHHHHHHHHHHHHHH-------CCCCEEEEEeChHHHH--HHHH-HHH---------HhcCC
Confidence 110 11 1111 112222222222223333332 26665442 2211211 1222 111 12345
Q ss_pred c--CCCCCHHHHHHHHHHHHHHh-CCc-------EEEEEccChhHHhhcCeEEEEeCCEEeEecChhH
Q psy13349 528 A--TSALDSEAEIAIQKSLYNLM-KGK-------TVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 528 ~--ts~LD~~~~~~i~~~i~~~~-~~~-------t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~ 585 (604)
| +.+.||..-..+.+.+.+.. .++ |+++-+|+++ -..+|++.-+.||+|+..++-.+
T Consensus 279 ~P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~-dpi~d~~~~i~dG~ivLsr~la~ 345 (440)
T TIGR01026 279 PPATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN-EPIADSVRGILDGHIVLSRALAQ 345 (440)
T ss_pred CCcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC-cchhhhhccccceEEEEecchhh
Confidence 3 56899999988888887765 356 8888899983 33579999999999997765444
No 474
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=98.44 E-value=2e-07 Score=101.44 Aligned_cols=62 Identities=18% Similarity=0.325 Sum_probs=49.5
Q ss_pred eeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHh
Q psy13349 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNIL 455 (604)
Q Consensus 376 l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~ 455 (604)
+++.++.+++|+++++|||||+||||++..|++.+.+..|.. .|++|++|+ |..+..||+.
T Consensus 246 ~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~-----------------kV~LI~~Dt--~RigA~EQLr 306 (484)
T PRK06995 246 LDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGAS-----------------KVALLTTDS--YRIGGHEQLR 306 (484)
T ss_pred ccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCCC-----------------eEEEEeCCc--cchhHHHHHH
Confidence 344555667899999999999999999999999887666641 578899987 5567788886
Q ss_pred c
Q psy13349 456 Y 456 (604)
Q Consensus 456 ~ 456 (604)
+
T Consensus 307 ~ 307 (484)
T PRK06995 307 I 307 (484)
T ss_pred H
Confidence 5
No 475
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=98.44 E-value=4.3e-07 Score=91.16 Aligned_cols=44 Identities=18% Similarity=0.355 Sum_probs=35.9
Q ss_pred HccCCCeEEEeccCCC------CCHHHHHHHHHHHHHHh--CCcEEEEEccCh
Q psy13349 516 ILKNAPILLLDEATSA------LDSEAEIAIQKSLYNLM--KGKTVIAIAHRL 560 (604)
Q Consensus 516 ll~~p~ililDE~ts~------LD~~~~~~i~~~i~~~~--~~~t~i~itH~l 560 (604)
...+|+++|+| |+++ .|+.....+.+.+.+.. .++|+++++|..
T Consensus 108 ~~~~~~lvviD-pl~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 108 LIRRIDLVVID-PLVSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HhcCCCEEEEC-ChHHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 35799999999 7654 69988888888887765 378999999976
No 476
>PRK01889 GTPase RsgA; Reviewed
Probab=98.43 E-value=1.5e-07 Score=99.88 Aligned_cols=82 Identities=21% Similarity=0.222 Sum_probs=67.9
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHH
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI 454 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 454 (604)
-++.+.-.+++|++++++|+||+|||||++.|+|...|..|+|.+++..-.. ...++++.+++|+..+|+.+...|+
T Consensus 184 gl~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~---tt~~~~l~~l~~~~~l~DtpG~~~~ 260 (356)
T PRK01889 184 GLDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH---TTTHRELHPLPSGGLLIDTPGMREL 260 (356)
T ss_pred cHHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc---hhhhccEEEecCCCeecCCCchhhh
Confidence 3566666788999999999999999999999999999999999998754322 2335689999999999988788888
Q ss_pred hcCCC
Q psy13349 455 LYGRP 459 (604)
Q Consensus 455 ~~g~~ 459 (604)
.+..+
T Consensus 261 ~l~~~ 265 (356)
T PRK01889 261 QLWDA 265 (356)
T ss_pred cccCc
Confidence 77543
No 477
>PRK08149 ATP synthase SpaL; Validated
Probab=98.39 E-value=3e-07 Score=98.67 Aligned_cols=69 Identities=23% Similarity=0.397 Sum_probs=58.9
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc---cEEEECCEeCCCCCHHHHh----ccceEEccc
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY---GEILIDGQNISNVSQESLR----EQIGMVTQD 442 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~I~i~g~~~~~~~~~~~r----~~i~~v~Q~ 442 (604)
.++++++ +++.+||+++|+|+||+|||||+++|++..+++. |.|-.+|.++.++..+.++ +++++|...
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~ 214 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYAT 214 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEEC
Confidence 4689999 9999999999999999999999999999999987 8999999998876655443 556666554
No 478
>PF09818 ABC_ATPase: Predicted ATPase of the ABC class; InterPro: IPR019195 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry consists of various predicted ABC transporter class ATPases.
Probab=98.37 E-value=4.4e-06 Score=88.50 Aligned_cols=173 Identities=24% Similarity=0.302 Sum_probs=115.7
Q ss_pred EEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEECCEeCCCCCHHHHhccceEEcccC
Q psy13349 365 VSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL-RFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDT 443 (604)
Q Consensus 365 vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~-~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~ 443 (604)
|++..|+.. .+.+ +-|++| ++.|||..=-|||||++.|. |.|+.-.| ||.+ .+--.+.-.
T Consensus 227 ve~~LP~~g-~v~G--MGIp~G-vTlIvGGGyHGKSTLL~Ale~GVYnHipG----DGRE-----------~VVT~~~av 287 (448)
T PF09818_consen 227 VEIELPNGG-TVTG--MGIPKG-VTLIVGGGYHGKSTLLEALERGVYNHIPG----DGRE-----------FVVTDPDAV 287 (448)
T ss_pred EEEECCCCC-EEEE--EeeCCc-EEEEECCCCccHHHHHHHHHhcccCCCCC----CCce-----------EEEECCCce
Confidence 667766532 3333 458999 99999999999999998875 66765555 5532 222211111
Q ss_pred cCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeE
Q psy13349 444 SLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523 (604)
Q Consensus 444 ~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~il 523 (604)
. || +.|- .....+++..||.+||. |.||.--. -.+=||-.-|=-.|..|+=..+++|
T Consensus 288 k-----ir---------AEDG---R~V~~vDISpFI~~LP~-----g~dT~~Fs-T~~ASGSTSqAAnI~EAlE~Ga~~L 344 (448)
T PF09818_consen 288 K-----IR---------AEDG---RSVEGVDISPFINNLPG-----GKDTTCFS-TENASGSTSQAANIMEALEAGARLL 344 (448)
T ss_pred E-----EE---------ecCC---ceEeCccchHHHhhCCC-----CCCCCccc-ccCCCchHHHHHHHHHHHHcCCCEE
Confidence 1 10 1010 11235677899999998 99987332 2367999999999999999999999
Q ss_pred EEeccCCCC-----CHHHHHHH----------HHHHHHHh--CCcEEEEEcc-ChhHHhhcCeEEEEeCCEEeE
Q psy13349 524 LLDEATSAL-----DSEAEIAI----------QKSLYNLM--KGKTVIAIAH-RLSTISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 524 ilDE~ts~L-----D~~~~~~i----------~~~i~~~~--~~~t~i~itH-~l~~~~~~d~i~vl~~G~iv~ 579 (604)
++||=|||- |...++.+ .+.++++. .+-++|+|+- --..+.-||+|++||+-+..+
T Consensus 345 LiDEDtsATNfmiRD~rMq~Lv~k~kEPITPfidrvr~l~~~~GvStIlV~Ggsgdy~~vAD~Vi~Md~Y~~~d 418 (448)
T PF09818_consen 345 LIDEDTSATNFMIRDERMQALVSKEKEPITPFIDRVRSLYEKLGVSTILVVGGSGDYFDVADRVIMMDEYRPKD 418 (448)
T ss_pred EEcCcccchheeehhHHHHHhhccCCCCcchHHHHHHHHHHHcCceEEEEeccchhhHhhCCEEEEecCccchh
Confidence 999999985 44445554 23334432 2545555554 445678899999999887543
No 479
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=98.36 E-value=4.9e-07 Score=87.20 Aligned_cols=56 Identities=23% Similarity=0.345 Sum_probs=47.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDT 443 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~ 443 (604)
.|+.++|+||||||||||+++|++...| .+.+++..+........++.+++++|+.
T Consensus 1 ~g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 (186)
T PRK10078 1 MGKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPASAGSENHIALSEQEF 56 (186)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccchhHHhheeEcHHHH
Confidence 3889999999999999999999998875 5888888877665556677888998874
No 480
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=98.32 E-value=1.4e-06 Score=103.68 Aligned_cols=78 Identities=27% Similarity=0.318 Sum_probs=66.5
Q ss_pred CCCCCChhHHHHHHHHHH------HccC--CCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEEEEEccChhHHhhcCe
Q psy13349 498 HGIKLSGGQRQRIAIARV------ILKN--APILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAMDR 568 (604)
Q Consensus 498 ~g~~LSgGq~QrialARa------ll~~--p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~~~~d~ 568 (604)
.-.+|||||+=.++||=| +-.+ -+.++|||||.+||+++...+.+.+..... +.+|++|||+-.....+|.
T Consensus 812 ~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~e~~~~ 891 (908)
T COG0419 812 PIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELKERADV 891 (908)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHhCCe
Confidence 346899999886665544 4456 699999999999999999999999988764 6999999999999999999
Q ss_pred EEEEeCC
Q psy13349 569 LIVLDNG 575 (604)
Q Consensus 569 i~vl~~G 575 (604)
++.++..
T Consensus 892 ~i~V~k~ 898 (908)
T COG0419 892 RIRVKKD 898 (908)
T ss_pred EEEEEec
Confidence 9998653
No 481
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=98.32 E-value=6.2e-07 Score=87.27 Aligned_cols=107 Identities=23% Similarity=0.318 Sum_probs=60.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHH-----HHhcCCCCCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRD-----NILYGRPDAS 462 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e-----Ni~~g~~~~~ 462 (604)
+++|+||||||||||++.|.+.+ ..|++.+-+. |.+....+.++ +..++.|..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~-------------------D~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQ-------------------DSYYKDLSHEELEERKNNNYDHPDAF 59 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEe-------------------cccccccccccHHHhccCCCCCCCcc
Confidence 48999999999999999999988 3344433332 22211111111 1122233222
Q ss_pred -HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCH
Q psy13349 463 -ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534 (604)
Q Consensus 463 -~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~ 534 (604)
.+.+. +.+..+-. | ..+.-...+.|.|++++-.+ .+.+|+++|+|+|.+..++
T Consensus 60 ~~~~~~---------~~l~~l~~-----~--~~~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~ 113 (198)
T cd02023 60 DFDLLI---------SHLQDLKN-----G--KSVEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDK 113 (198)
T ss_pred cHHHHH---------HHHHHHHC-----C--CCEeccccccccCcccCCce---ecCCCCEEEEechhhccch
Confidence 22111 11222211 1 11223344677777766544 5678999999999999886
No 482
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.30 E-value=2.6e-06 Score=104.05 Aligned_cols=43 Identities=30% Similarity=0.434 Sum_probs=35.9
Q ss_pred cceEEeCCcEEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEECC
Q psy13349 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLR-FYDIKYGEILIDG 421 (604)
Q Consensus 379 isl~i~~G~~~~ivG~sGsGKSTl~~ll~~-~~~~~~G~I~i~g 421 (604)
+++..+++++++|+|++|+|||||++.+.+ +....+|.+++++
T Consensus 200 L~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 200 LHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 466778899999999999999999999944 4455689999876
No 483
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.29 E-value=6.7e-07 Score=85.45 Aligned_cols=65 Identities=25% Similarity=0.402 Sum_probs=45.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc-cceEEcccCcCC-cccHHHHHh
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE-QIGMVTQDTSLL-HRSIRDNIL 455 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~-~i~~v~Q~~~lf-~~ti~eNi~ 455 (604)
+||.++++|+|||||||++++|++++.+ +.++|.++.. ...+|+ ..++.+|+...+ ..+..+|+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~--~~~~r~~~~g~~~~~~~~~~~~~~~~~~~ 68 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHP--AKNIDKMSQGIPLTDEDRLPWLERLNDAS 68 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCC--HhHHHHHhcCCCCCcccchHHHHHHHHHH
Confidence 6999999999999999999999999877 5889988743 223332 345556654332 224444443
No 484
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=98.28 E-value=1.1e-06 Score=107.82 Aligned_cols=63 Identities=24% Similarity=0.217 Sum_probs=56.0
Q ss_pred CCCCCChhHHHHHH----HHHH--------HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhH
Q psy13349 498 HGIKLSGGQRQRIA----IARV--------ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLST 562 (604)
Q Consensus 498 ~g~~LSgGq~Qria----lARa--------ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~ 562 (604)
....||||||||++ +|+| +..+|++++|||||+++|+.+...+++.+.++ +.++|++||++..
T Consensus 1244 ~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~Wg 1318 (1353)
T TIGR02680 1244 RFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSEREWG 1318 (1353)
T ss_pred cccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccchhc
Confidence 35789999999996 5766 55799999999999999999999999999887 7899999999864
No 485
>PRK13898 type IV secretion system ATPase VirB4; Provisional
Probab=98.28 E-value=5e-06 Score=97.74 Aligned_cols=60 Identities=22% Similarity=0.187 Sum_probs=47.1
Q ss_pred HHccCCCeEEEeccCCCCC-HHHHHHHHHHHHHHh-CCcEEEEEccChhHH----------hhcCeEEEEeC
Q psy13349 515 VILKNAPILLLDEATSALD-SEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI----------SAMDRLIVLDN 574 (604)
Q Consensus 515 all~~p~ililDE~ts~LD-~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~----------~~~d~i~vl~~ 574 (604)
.+-.+|.++++|||...|| +...+.+.+.++..+ .+..++++||.++.+ ++|+--+.|-+
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~i~~~~~t~I~lpn 709 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASKSAISDTLVQQTATQIFLPN 709 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHhChhHHHHHHhCCeEEEcCC
Confidence 4556899999999999999 788888888887765 478999999998763 45655455544
No 486
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=98.24 E-value=6.9e-07 Score=87.69 Aligned_cols=29 Identities=31% Similarity=0.461 Sum_probs=26.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
++|+.++|+||||||||||++.|.+.+++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999998764
No 487
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=98.23 E-value=1.2e-06 Score=87.24 Aligned_cols=57 Identities=23% Similarity=0.248 Sum_probs=38.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEECCEeCCCCCHHHH---hccceEEccc
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLL-RFYDIKYGEILIDGQNISNVSQESL---REQIGMVTQD 442 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~-~~~~~~~G~I~i~g~~~~~~~~~~~---r~~i~~v~Q~ 442 (604)
-+++|+.+.|.||+|||||||+..++ ....+.++.+++... .+.+++ .+.+++.+|+
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e----~~~~~i~~~~~~~g~~~~~ 76 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE----ESRESIIRQAAQFGMDFEK 76 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc----CCHHHHHHHHHHhCCCHHH
Confidence 58999999999999999999987544 233455566777652 233332 2345655554
No 488
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.20 E-value=2.4e-06 Score=81.65 Aligned_cols=62 Identities=26% Similarity=0.264 Sum_probs=44.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE-----------CCEeCCCCCHHHHh-----ccceEEcccCcCCcc
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI-----------DGQNISNVSQESLR-----EQIGMVTQDTSLLHR 448 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i-----------~g~~~~~~~~~~~r-----~~i~~v~Q~~~lf~~ 448 (604)
|+.++|+|||||||||+++.|++.+.+. |.+.+ +|.+....+.+++. +.++.++|...++.+
T Consensus 1 ~~~~~i~G~sGsGKttl~~~l~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 78 (179)
T TIGR02322 1 GRLIYVVGPSGAGKDTLLDYARARLAGD-PRVHFVRRVITRPASAGGENHIALSTEEFDHREDGGAFALSWQAHGLSYG 78 (179)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCcC-CcEEEeeEEcccCCCCCCccccccCHHHHHHHHHCCCEEEEEeecCcccc
Confidence 6789999999999999999999987654 55544 56666555554442 347778887655543
No 489
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.19 E-value=1e-05 Score=73.22 Aligned_cols=54 Identities=22% Similarity=0.217 Sum_probs=39.9
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh------CCcEEEEEccChh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM------KGKTVIAIAHRLS 561 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~------~~~t~i~itH~l~ 561 (604)
.+.....++...++.++++||.-.. ++.....+.+.+.... .+.++|++++...
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 4556667777889999999998765 5666677777776653 4678888888654
No 490
>PLN02796 D-glycerate 3-kinase
Probab=98.18 E-value=7.1e-07 Score=92.82 Aligned_cols=62 Identities=23% Similarity=0.370 Sum_probs=51.6
Q ss_pred CceeeecceEE---eCCcE-----EEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEECCEeCCCCCHHHHhc
Q psy13349 373 HLIINNLSLTI---QPGEK-----IGLVGRSGAGKSTINNLLLRFYDIK---YGEILIDGQNISNVSQESLRE 434 (604)
Q Consensus 373 ~~~l~~isl~i---~~G~~-----~~ivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~~~~~~~~~~~r~ 434 (604)
..+++++++++ ++|+. +||+|+||||||||++.|.+++.+. .|.|.+||..+...+...+++
T Consensus 79 ~~il~~l~~~~~~~~~G~~~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfYLt~~e~~~L~~ 151 (347)
T PLN02796 79 LWCEDQLEAHRSKFKDGDEIPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFYLTAADQAKLAE 151 (347)
T ss_pred HHHHHHHHHHHhhhccCCCCCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcccchhhHHHHHh
Confidence 35788899888 67887 9999999999999999999999875 588999998876655555554
No 491
>PRK05399 DNA mismatch repair protein MutS; Provisional
Probab=98.16 E-value=9e-06 Score=95.60 Aligned_cols=66 Identities=20% Similarity=0.192 Sum_probs=43.2
Q ss_pred CChhHHHHHHHHHHHcc--CCCeEEEecc---CCCCCHHH-HHHHHHHHHHHhCCcEEEEEccChhHHhhcCe
Q psy13349 502 LSGGQRQRIAIARVILK--NAPILLLDEA---TSALDSEA-EIAIQKSLYNLMKGKTVIAIAHRLSTISAMDR 568 (604)
Q Consensus 502 LSgGq~QrialARall~--~p~ililDE~---ts~LD~~~-~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~ 568 (604)
+|--+.....++++|-. +++++|+||| ||.+|... ...+.+.+.+. .+++++++||..+..+.+|+
T Consensus 667 ~STF~~E~~~~~~il~~at~~sLvllDE~GrGTs~~dg~aia~aile~l~~~-~~~~~l~aTH~~el~~l~~~ 738 (854)
T PRK05399 667 RSTFMVEMTETANILNNATERSLVLLDEIGRGTSTYDGLSIAWAVAEYLHDK-IGAKTLFATHYHELTELEEK 738 (854)
T ss_pred cccHHHHHHHHHHHHHhCCCCcEEEEecCCCCCCcchhHHHHHHHHHHHHhc-CCceEEEEechHHHHHHhhh
Confidence 34444455666666555 8899999999 99999554 22244444332 25799999999776555553
No 492
>PRK07594 type III secretion system ATPase SsaN; Validated
Probab=98.15 E-value=2e-06 Score=92.46 Aligned_cols=66 Identities=18% Similarity=0.265 Sum_probs=58.1
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~ 424 (604)
+.++.++++..+..+..+++++ +++.+||+++|+|+||+|||||++.++|..+++.|.+.+.|..-
T Consensus 128 ~~~~r~~v~~~l~tGi~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGeRg 193 (433)
T PRK07594 128 PAMVRQPITQPLMTGIRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGERG 193 (433)
T ss_pred CceeccCHhheeCCCceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECCCc
Confidence 4577788887786667799999 99999999999999999999999999999999999888777543
No 493
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.14 E-value=4.8e-06 Score=81.17 Aligned_cols=57 Identities=23% Similarity=0.355 Sum_probs=44.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSL 445 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 445 (604)
+++|+||+|||||||++.+.+.+.+..| +.+...|.......++....++++|++.+
T Consensus 3 ~i~i~G~~GsGKTTll~~l~~~l~~~~~-~~~~~~d~~~~~~~~~~~~~~~~~~~~~~ 59 (199)
T TIGR00101 3 KIGVAGPVGSGKTALIEALTRALRQKYQ-LAVITNDIYTQEDAEFLVKNSALPPERIL 59 (199)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCcCCc-EEEEeCCcCChhHHHHHHHcCCCCcCcee
Confidence 6899999999999999999999887655 55555566555556666678899998754
No 494
>PRK15494 era GTPase Era; Provisional
Probab=98.13 E-value=1.6e-06 Score=91.56 Aligned_cols=55 Identities=22% Similarity=0.279 Sum_probs=50.3
Q ss_pred cCceEEEEEEEEEeCCCCceeeecceEEeCCc-------EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 356 TNGKIFFKNVSFSYDQKHLIINNLSLTIQPGE-------KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 356 ~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~-------~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
..+.+++++++|+|+...++++++++++++|+ +++++|++|+|||||++.+.|-.
T Consensus 15 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~k~~kV~ivG~~nvGKSTLin~l~~~k 76 (339)
T PRK15494 15 FKGDTEALAAAVREDASTGSTSKLPLEVKFGKMSNQKTVSVCIIGRPNSGKSTLLNRIIGEK 76 (339)
T ss_pred hCCccccccccccCCCCcccccCCccccccccccccceeEEEEEcCCCCCHHHHHHHHhCCc
Confidence 45789999999999977779999999999999 99999999999999999998753
No 495
>PRK13873 conjugal transfer ATPase TrbE; Provisional
Probab=98.12 E-value=3.8e-05 Score=90.48 Aligned_cols=62 Identities=27% Similarity=0.258 Sum_probs=47.8
Q ss_pred HHHccCCCeEEEeccCCCCC-HHHHHHHHHHHHHHh-CCcEEEEEccChhHH----------hhcCeEEEEeCC
Q psy13349 514 RVILKNAPILLLDEATSALD-SEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI----------SAMDRLIVLDNG 575 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD-~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~----------~~~d~i~vl~~G 575 (604)
+.+-.+|+++++|||+..|| +...+.+.+.++... .+.+++++||+++.+ ++|+-.+.|.+.
T Consensus 630 ~~~~~~p~illlDE~~~~Ld~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~s~~~~~il~n~~t~i~L~~~ 703 (811)
T PRK13873 630 DRFDGRPTLLILDEAWLFLDDPVFAAQLREWLKTLRKKNVSVIFATQSLADIDGSAIAPAIIESCPTRIFLPNE 703 (811)
T ss_pred HHhcCCCcEEEEcChhhhCCCHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHhcCchHHHHHHhCCeeEEcCCc
Confidence 33445899999999999999 677888888887764 578999999998744 456666666554
No 496
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.09 E-value=2.4e-06 Score=81.60 Aligned_cols=63 Identities=35% Similarity=0.399 Sum_probs=40.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCC------------CccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHH
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDI------------KYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDN 453 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~------------~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 453 (604)
|++++|+||||||||||++.|++.++. ..|+ .+|.+..-.+.+.+.+.+ .++.++...++.+|
T Consensus 1 g~ii~l~G~~GsGKsTl~~~L~~~~~~~~~~~~~~tr~~~~g~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~ 75 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPGE--VDGVDYFFVSKEEFEEMI---AAGEFLEWAEVHGN 75 (180)
T ss_pred CcEEEEECCCCCCHHHHHHHHHccCccccccccceeeCCCCCC--cCCcEEEEecHHHHHHHH---HcCCcEEEEEECCe
Confidence 789999999999999999999997643 2232 234443333444444332 45555555556666
No 497
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=98.09 E-value=5e-06 Score=86.49 Aligned_cols=56 Identities=27% Similarity=0.372 Sum_probs=48.6
Q ss_pred EeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC
Q psy13349 368 SYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424 (604)
Q Consensus 368 ~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~ 424 (604)
.|..+..+++++ +++.+||+++|+|+||+|||||+++|+|...|+.|.+...|.+-
T Consensus 52 ~l~tGi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGer~ 107 (326)
T cd01136 52 VLPTGVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGERG 107 (326)
T ss_pred EcCCCcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEecCC
Confidence 444456799999 99999999999999999999999999999999988887766443
No 498
>COG1195 RecF Recombinational DNA repair ATPase (RecF pathway) [DNA replication, recombination, and repair]
Probab=98.09 E-value=4.9e-05 Score=79.58 Aligned_cols=77 Identities=23% Similarity=0.344 Sum_probs=56.4
Q ss_pred CCCChhHHHHHHHHHHHc---------cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcC---
Q psy13349 500 IKLSGGQRQRIAIARVIL---------KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMD--- 567 (604)
Q Consensus 500 ~~LSgGq~QrialARall---------~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d--- 567 (604)
.-.|-||+.-+++|--|. .++|||+|||-+|.||+.-+..+.+. .+. ...|.|..|+....-...+
T Consensus 274 ~~~S~Gqqk~l~laLrLAe~~l~~~~~g~~PILLLDDv~seLD~~Rr~~Ll~~-~~~-~~Q~fvT~t~~~~~~~~~~~~~ 351 (363)
T COG1195 274 DFASQGQQKTLALALRLAEIELLREETGEYPILLLDDVASELDDGRRAALLDT-IEL-GVQVFVTTTDLEDIDDNLDENA 351 (363)
T ss_pred hhcCcchHHHHHHHHHHHHHHHHHHhcCCCCEEEechhhHhhCHHHHHHHHhh-ccc-CCeEEEEccCHHHhhhhhhccc
Confidence 357999999988875443 57899999999999999999999888 332 3445555555443332333
Q ss_pred eEEEEeCCEEe
Q psy13349 568 RLIVLDNGCVA 578 (604)
Q Consensus 568 ~i~vl~~G~iv 578 (604)
+++..++|+|.
T Consensus 352 ~~f~V~~g~i~ 362 (363)
T COG1195 352 QMFHVEDGKIT 362 (363)
T ss_pred eEEEEecceec
Confidence 89999999874
No 499
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.09 E-value=8.1e-06 Score=92.72 Aligned_cols=39 Identities=28% Similarity=0.317 Sum_probs=31.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--------EEEECCEeC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYG--------EILIDGQNI 424 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--------~I~i~g~~~ 424 (604)
.+.++|+||+|+||||+++++.++..+..| -+.+||.++
T Consensus 175 ~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l 221 (615)
T TIGR02903 175 PQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTL 221 (615)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhc
Confidence 456999999999999999999998865443 477777654
No 500
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=98.08 E-value=4.7e-06 Score=80.46 Aligned_cols=52 Identities=13% Similarity=0.211 Sum_probs=38.5
Q ss_pred ccccCCCCCChhHHHHHH--HHHHHcc-CCCeEEEeccCCCCCHHHHHHHHHHHHHHhC
Q psy13349 494 HVGEHGIKLSGGQRQRIA--IARVILK-NAPILLLDEATSALDSEAEIAIQKSLYNLMK 549 (604)
Q Consensus 494 ~v~e~g~~LSgGq~Qria--lARall~-~p~ililDE~ts~LD~~~~~~i~~~i~~~~~ 549 (604)
.+....-.+|+||+|++. +++.+-. +++++ |||++|.+..+.+.+.|.+..+
T Consensus 140 iv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 140 IVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred EEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHhc
Confidence 344555568999999977 6666644 33443 9999999999999999877654
Done!