Query psy13349
Match_columns 604
No_of_seqs 256 out of 2750
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 17:08:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13349.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13349hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 100.0 7E-95 2.4E-99 878.0 71.7 571 25-601 62-654 (1321)
2 3qf4_B Uncharacterized ABC tra 100.0 2.3E-93 7.8E-98 804.2 64.2 570 22-602 22-592 (598)
3 3qf4_A ABC transporter, ATP-bi 100.0 8.6E-93 3E-97 797.4 66.6 566 27-602 13-580 (587)
4 4a82_A Cystic fibrosis transme 100.0 4.1E-93 1.4E-97 799.6 64.0 571 25-601 2-577 (578)
5 3b5x_A Lipid A export ATP-bind 100.0 1.1E-90 3.7E-95 780.9 77.2 567 24-602 12-581 (582)
6 4f4c_A Multidrug resistance pr 100.0 2.1E-93 7.1E-98 865.1 52.3 568 27-602 742-1318(1321)
7 3b60_A Lipid A export ATP-bind 100.0 1.4E-90 4.7E-95 780.0 70.6 567 24-602 12-581 (582)
8 2yl4_A ATP-binding cassette SU 100.0 6.8E-90 2.3E-94 776.3 72.8 571 25-602 7-585 (595)
9 3g5u_A MCG1178, multidrug resi 100.0 1.3E-86 4.4E-91 803.9 59.8 570 26-601 36-626 (1284)
10 3g5u_A MCG1178, multidrug resi 100.0 9.1E-82 3.1E-86 761.6 55.7 569 28-602 696-1272(1284)
11 3nh6_A ATP-binding cassette SU 100.0 3.9E-67 1.3E-71 540.3 30.8 241 357-602 51-291 (306)
12 2ff7_A Alpha-hemolysin translo 100.0 2.4E-58 8E-63 462.9 30.2 238 358-600 6-245 (247)
13 2ghi_A Transport protein; mult 100.0 4.9E-57 1.7E-61 456.7 28.1 239 358-602 16-256 (260)
14 1mv5_A LMRA, multidrug resista 100.0 5.7E-58 1.9E-62 459.5 19.2 237 360-601 2-239 (243)
15 2ixe_A Antigen peptide transpo 100.0 1.2E-56 4.2E-61 456.3 27.6 240 358-602 15-259 (271)
16 2cbz_A Multidrug resistance-as 100.0 1.4E-53 4.7E-58 425.8 22.8 225 359-602 3-231 (237)
17 3gd7_A Fusion complex of cysti 100.0 1.5E-53 5.3E-58 452.3 23.6 232 356-594 16-249 (390)
18 2pze_A Cystic fibrosis transme 100.0 4.4E-53 1.5E-57 420.1 24.8 221 358-597 5-227 (229)
19 3gfo_A Cobalt import ATP-bindi 100.0 1.3E-51 4.6E-56 419.2 24.6 223 359-593 7-238 (275)
20 3tif_A Uncharacterized ABC tra 100.0 1.7E-51 5.9E-56 410.1 21.2 216 360-587 2-233 (235)
21 3tui_C Methionine import ATP-b 100.0 9.8E-51 3.3E-55 425.2 27.8 220 358-589 23-254 (366)
22 1ji0_A ABC transporter; ATP bi 100.0 1.4E-50 4.7E-55 405.0 26.0 219 359-589 6-229 (240)
23 4g1u_C Hemin import ATP-bindin 100.0 7.6E-50 2.6E-54 405.1 26.2 214 359-589 11-238 (266)
24 2olj_A Amino acid ABC transpor 100.0 1.7E-49 5.9E-54 401.3 27.6 219 359-590 24-250 (263)
25 1vpl_A ABC transporter, ATP-bi 100.0 3.5E-49 1.2E-53 397.7 27.6 217 358-588 14-235 (256)
26 1g6h_A High-affinity branched- 100.0 1.5E-49 5.1E-54 401.5 24.8 214 359-585 7-239 (257)
27 1b0u_A Histidine permease; ABC 100.0 1.1E-49 3.9E-54 403.2 23.1 218 359-589 6-243 (262)
28 3fvq_A Fe(3+) IONS import ATP- 100.0 2.4E-49 8.2E-54 414.6 25.4 224 359-595 4-236 (359)
29 2pcj_A ABC transporter, lipopr 100.0 1.5E-49 5.2E-54 393.3 22.5 211 359-582 4-222 (224)
30 2yz2_A Putative ABC transporte 100.0 2.2E-49 7.7E-54 402.1 23.4 212 360-590 3-229 (266)
31 3rlf_A Maltose/maltodextrin im 100.0 1.3E-48 4.3E-53 411.8 27.7 222 359-595 3-231 (381)
32 2bbs_A Cystic fibrosis transme 100.0 3.5E-49 1.2E-53 404.4 21.1 217 358-597 39-256 (290)
33 1z47_A CYSA, putative ABC-tran 100.0 3.6E-49 1.2E-53 413.4 21.1 218 358-589 13-236 (355)
34 2qi9_C Vitamin B12 import ATP- 100.0 1.3E-48 4.5E-53 391.9 24.1 216 359-597 4-230 (249)
35 2ihy_A ABC transporter, ATP-bi 100.0 4E-49 1.4E-53 402.3 20.6 217 359-589 21-253 (279)
36 2yyz_A Sugar ABC transporter, 100.0 1.2E-48 4.2E-53 410.4 24.3 217 359-590 3-225 (359)
37 2onk_A Molybdate/tungstate ABC 100.0 2E-48 6.8E-53 388.7 24.3 213 360-590 2-218 (240)
38 2it1_A 362AA long hypothetical 100.0 6.4E-49 2.2E-53 413.0 20.3 217 359-590 3-225 (362)
39 3d31_A Sulfate/molybdate ABC t 100.0 1.4E-48 4.8E-53 408.7 21.4 211 360-590 2-219 (348)
40 2d2e_A SUFC protein; ABC-ATPas 100.0 1.1E-48 3.9E-53 393.5 19.4 214 359-585 3-230 (250)
41 1oxx_K GLCV, glucose, ABC tran 100.0 1.2E-48 4.1E-53 410.6 20.0 219 359-590 3-232 (353)
42 1v43_A Sugar-binding transport 100.0 1.3E-47 4.5E-52 404.5 27.3 217 359-590 11-233 (372)
43 2zu0_C Probable ATP-dependent 100.0 2.7E-47 9.3E-52 386.9 25.6 217 359-588 20-254 (267)
44 1g29_1 MALK, maltose transport 100.0 1.9E-47 6.4E-52 404.0 24.6 216 359-589 3-230 (372)
45 2pjz_A Hypothetical protein ST 100.0 8.3E-48 2.8E-52 389.0 20.4 206 360-589 2-216 (263)
46 2nq2_C Hypothetical ABC transp 100.0 2.5E-47 8.6E-52 383.9 22.4 211 359-597 4-225 (253)
47 1sgw_A Putative ABC transporte 100.0 1.1E-46 3.6E-51 369.4 14.7 196 358-578 9-211 (214)
48 1yqt_A RNAse L inhibitor; ATP- 100.0 2.5E-37 8.7E-42 342.8 17.7 200 359-588 287-493 (538)
49 3bk7_A ABC transporter ATP-bin 100.0 4.2E-37 1.4E-41 344.5 18.3 199 359-588 357-563 (607)
50 3ozx_A RNAse L inhibitor; ATP 100.0 5.5E-37 1.9E-41 339.3 17.5 201 358-588 268-477 (538)
51 2v9p_A Replication protein E1; 100.0 6E-41 2.1E-45 344.2 -15.3 239 291-601 36-276 (305)
52 2iw3_A Elongation factor 3A; a 100.0 9.7E-37 3.3E-41 352.7 14.9 208 359-582 671-981 (986)
53 3j16_B RLI1P; ribosome recycli 100.0 1.6E-35 5.4E-40 331.2 18.1 199 363-590 350-561 (608)
54 3bk7_A ABC transporter ATP-bin 100.0 7.8E-36 2.7E-40 334.2 15.6 197 359-575 83-304 (607)
55 2iw3_A Elongation factor 3A; a 100.0 1.8E-34 6.2E-39 333.8 26.2 199 358-589 434-636 (986)
56 1yqt_A RNAse L inhibitor; ATP- 100.0 9.6E-36 3.3E-40 330.1 14.8 196 360-575 21-234 (538)
57 3ux8_A Excinuclease ABC, A sub 100.0 1.7E-35 5.8E-40 337.7 17.1 210 373-591 31-301 (670)
58 3ux8_A Excinuclease ABC, A sub 100.0 2E-35 6.8E-40 337.1 14.2 205 373-594 335-646 (670)
59 3pih_A Uvrabc system protein A 100.0 5.7E-34 1.9E-38 329.5 18.2 208 374-597 598-911 (916)
60 3j16_B RLI1P; ribosome recycli 100.0 1.9E-33 6.6E-38 314.4 15.2 196 364-577 82-299 (608)
61 3ozx_A RNAse L inhibitor; ATP 100.0 1.1E-33 3.6E-38 313.0 12.5 192 364-576 4-214 (538)
62 2vf7_A UVRA2, excinuclease ABC 100.0 1.4E-32 5E-37 315.3 14.9 219 358-594 501-833 (842)
63 4aby_A DNA repair protein RECN 100.0 1.2E-31 4E-36 289.1 19.2 206 374-580 49-380 (415)
64 2r6f_A Excinuclease ABC subuni 100.0 1.8E-31 6.2E-36 306.3 18.6 216 359-596 629-950 (972)
65 2npi_A Protein CLP1; CLP1-PCF1 100.0 6.6E-35 2.3E-39 316.5 -10.7 190 360-588 119-338 (460)
66 2ygr_A Uvrabc system protein A 100.0 3.8E-31 1.3E-35 304.8 18.0 218 358-597 646-969 (993)
67 1e69_A Chromosome segregation 100.0 1.7E-28 5.9E-33 255.7 14.6 209 359-586 5-311 (322)
68 3b85_A Phosphate starvation-in 99.9 6.3E-30 2.2E-34 249.4 -5.0 159 373-577 13-172 (208)
69 3qf7_A RAD50; ABC-ATPase, ATPa 99.9 1.8E-26 6E-31 244.3 15.6 83 497-579 275-364 (365)
70 4gp7_A Metallophosphoesterase; 99.9 1.4E-27 4.7E-32 226.0 4.7 150 378-570 1-169 (171)
71 1z6g_A Guanylate kinase; struc 99.9 2.6E-29 8.9E-34 247.3 -9.9 166 374-574 11-193 (218)
72 1ye8_A Protein THEP1, hypothet 99.9 4.3E-27 1.5E-31 223.9 3.4 147 388-579 2-159 (178)
73 2pt7_A CAG-ALFA; ATPase, prote 99.9 1.4E-27 4.6E-32 249.3 -5.6 141 362-577 151-292 (330)
74 1tq4_A IIGP1, interferon-induc 99.9 2.9E-27 9.8E-32 252.4 -5.2 174 373-576 36-255 (413)
75 2dpy_A FLII, flagellum-specifi 99.9 4.9E-27 1.7E-31 253.4 -5.9 193 358-587 130-343 (438)
76 3b9q_A Chloroplast SRP recepto 99.9 3.3E-25 1.1E-29 228.2 -1.9 176 376-578 90-285 (302)
77 3sop_A Neuronal-specific septi 99.9 6.1E-25 2.1E-29 222.8 -1.2 146 388-563 4-153 (270)
78 2o5v_A DNA replication and rep 99.9 9.5E-23 3.3E-27 214.2 14.7 81 501-586 265-354 (359)
79 3aez_A Pantothenate kinase; tr 99.9 5.2E-25 1.8E-29 227.7 -5.9 180 356-576 40-246 (312)
80 2og2_A Putative signal recogni 99.9 3.6E-24 1.2E-28 224.7 -0.6 175 377-578 148-342 (359)
81 1znw_A Guanylate kinase, GMP k 99.9 9.8E-25 3.3E-29 212.7 -4.6 168 373-573 9-202 (207)
82 2obl_A ESCN; ATPase, hydrolase 99.9 2.1E-23 7.3E-28 218.6 0.6 194 358-586 44-253 (347)
83 2eyu_A Twitching motility prot 99.8 1.2E-24 4.1E-29 219.6 -12.7 174 374-561 15-241 (261)
84 1tf7_A KAIC; homohexamer, hexa 99.8 5E-23 1.7E-27 228.3 -1.2 172 368-575 20-210 (525)
85 2i3b_A HCR-ntpase, human cance 99.8 2.6E-23 8.8E-28 199.6 -3.8 172 386-598 1-182 (189)
86 2f1r_A Molybdopterin-guanine d 99.8 1.1E-23 3.9E-28 198.7 -6.2 111 387-523 3-125 (171)
87 4ad8_A DNA repair protein RECN 99.8 7.3E-21 2.5E-25 210.5 12.8 76 500-575 395-473 (517)
88 2ewv_A Twitching motility prot 99.8 6.7E-24 2.3E-28 224.9 -12.2 175 374-562 126-353 (372)
89 3pih_A Uvrabc system protein A 99.8 2.8E-21 9.5E-26 223.7 7.9 169 401-590 383-562 (916)
90 1cr0_A DNA primase/helicase; R 99.8 5.7E-21 1.9E-25 196.3 9.0 182 373-577 22-237 (296)
91 2o8b_B DNA mismatch repair pro 99.8 4.3E-21 1.5E-25 225.8 8.5 170 358-583 749-937 (1022)
92 3qkt_A DNA double-strand break 99.8 1E-19 3.5E-24 190.7 15.0 78 499-576 246-332 (339)
93 2vf7_A UVRA2, excinuclease ABC 99.8 2.4E-20 8.1E-25 214.2 10.6 185 394-589 270-476 (842)
94 2jeo_A Uridine-cytidine kinase 99.8 1.5E-21 5.2E-26 195.2 -0.5 173 372-588 11-187 (245)
95 1lvg_A Guanylate kinase, GMP k 99.8 1.8E-23 6.3E-28 202.3 -14.9 159 383-574 1-173 (198)
96 1tf7_A KAIC; homohexamer, hexa 99.8 1.5E-20 5.2E-25 208.3 6.0 152 380-576 275-444 (525)
97 1lw7_A Transcriptional regulat 99.8 1.3E-21 4.4E-26 207.3 -4.0 150 375-529 157-329 (365)
98 2r6f_A Excinuclease ABC subuni 99.8 9.3E-20 3.2E-24 209.6 9.0 100 490-589 492-601 (972)
99 2ehv_A Hypothetical protein PH 99.8 1.9E-20 6.5E-25 186.6 0.5 179 360-573 7-206 (251)
100 1w1w_A Structural maintenance 99.8 4.8E-19 1.7E-23 191.5 10.2 73 501-573 333-410 (430)
101 3thx_A DNA mismatch repair pro 99.8 9.2E-19 3.1E-23 203.6 12.9 165 358-586 630-811 (934)
102 1pzn_A RAD51, DNA repair and r 99.8 4.8E-20 1.6E-24 193.7 2.0 166 374-586 118-313 (349)
103 1f2t_B RAD50 ABC-ATPase; DNA d 99.8 9.5E-19 3.2E-23 160.8 10.3 88 490-577 41-142 (148)
104 2ygr_A Uvrabc system protein A 99.8 1.4E-18 4.9E-23 200.5 14.0 140 445-589 466-618 (993)
105 1ewq_A DNA mismatch repair pro 99.8 1.8E-19 6.3E-24 205.9 5.9 144 358-566 549-704 (765)
106 3asz_A Uridine kinase; cytidin 99.8 1.4E-21 4.9E-26 190.3 -9.9 140 383-560 3-161 (211)
107 1pui_A ENGB, probable GTP-bind 99.8 6.4E-20 2.2E-24 177.8 0.4 168 360-548 4-197 (210)
108 4a74_A DNA repair and recombin 99.8 2.5E-19 8.4E-24 176.2 4.3 148 382-576 21-201 (231)
109 3szr_A Interferon-induced GTP- 99.7 2E-20 7E-25 210.2 -4.6 189 359-587 10-236 (608)
110 2qnr_A Septin-2, protein NEDD5 99.7 9.8E-20 3.4E-24 187.6 -0.0 162 363-561 2-168 (301)
111 2gza_A Type IV secretion syste 99.7 4.3E-20 1.5E-24 195.0 -3.8 148 361-515 137-301 (361)
112 3jvv_A Twitching mobility prot 99.7 1.7E-18 5.7E-23 181.9 4.7 146 363-575 92-246 (356)
113 1rj9_A FTSY, signal recognitio 99.7 4.2E-18 1.4E-22 175.2 7.3 163 385-576 101-284 (304)
114 2qag_C Septin-7; cell cycle, c 99.7 6.6E-19 2.3E-23 188.4 -1.2 166 358-563 10-180 (418)
115 3kta_B Chromosome segregation 99.7 4.5E-17 1.5E-21 153.5 11.1 79 499-577 62-146 (173)
116 2w0m_A SSO2452; RECA, SSPF, un 99.7 6.9E-18 2.4E-22 165.8 5.5 166 372-575 8-192 (235)
117 3thx_B DNA mismatch repair pro 99.7 1.7E-17 5.7E-22 192.5 8.6 157 358-568 639-804 (918)
118 1odf_A YGR205W, hypothetical 3 99.7 2.5E-19 8.5E-24 183.2 -5.9 130 384-536 29-169 (290)
119 1s96_A Guanylate kinase, GMP k 99.7 1.3E-17 4.4E-22 163.7 2.1 144 381-589 11-161 (219)
120 2qag_B Septin-6, protein NEDD5 99.6 2.8E-17 9.7E-22 175.1 3.5 186 359-559 16-218 (427)
121 1wb9_A DNA mismatch repair pro 99.6 4.1E-17 1.4E-21 187.6 4.5 163 358-579 576-749 (800)
122 1nij_A Hypothetical protein YJ 99.6 2.6E-18 9E-23 178.3 -6.0 155 386-561 4-190 (318)
123 1nlf_A Regulatory protein REPA 99.6 5.8E-16 2E-20 157.5 9.8 151 382-563 26-184 (279)
124 2cvh_A DNA repair and recombin 99.6 8E-16 2.7E-20 149.9 9.3 152 373-575 6-185 (220)
125 3c8u_A Fructokinase; YP_612366 99.6 1.1E-18 3.6E-23 170.0 -11.4 120 383-529 19-140 (208)
126 1zp6_A Hypothetical protein AT 99.6 8.1E-18 2.8E-22 160.8 -5.2 163 382-569 5-169 (191)
127 2bdt_A BH3686; alpha-beta prot 99.5 1.8E-18 6E-23 165.5 -16.9 162 386-587 2-183 (189)
128 2qm8_A GTPase/ATPase; G protei 99.5 2.7E-17 9.3E-22 171.9 -10.0 181 360-548 30-259 (337)
129 1n0w_A DNA repair protein RAD5 99.5 1.6E-14 5.6E-19 142.8 8.6 153 375-575 12-209 (243)
130 2yhs_A FTSY, cell division pro 99.5 1.5E-14 5E-19 156.2 6.4 150 376-558 283-447 (503)
131 2bbw_A Adenylate kinase 4, AK4 99.5 2.1E-15 7.1E-20 150.5 -1.8 149 385-548 26-197 (246)
132 1htw_A HI0065; nucleotide-bind 99.5 3.3E-15 1.1E-19 138.8 -1.5 87 363-456 11-97 (158)
133 1p9r_A General secretion pathw 99.4 2E-16 6.9E-21 169.3 -12.6 129 374-524 157-314 (418)
134 2oap_1 GSPE-2, type II secreti 99.4 5.8E-16 2E-20 170.0 -9.5 177 374-567 248-458 (511)
135 3auy_A DNA double-strand break 99.4 1.7E-13 5.9E-18 145.0 9.7 74 500-573 279-359 (371)
136 3e70_C DPA, signal recognition 99.4 1.4E-13 4.8E-18 142.8 8.7 161 382-578 125-307 (328)
137 2rcn_A Probable GTPase ENGC; Y 99.4 9.9E-14 3.4E-18 145.0 6.2 122 375-517 205-329 (358)
138 1sxj_E Activator 1 40 kDa subu 99.4 1.1E-13 3.9E-18 145.0 6.5 137 388-562 38-176 (354)
139 2x8a_A Nuclear valosin-contain 99.4 1.5E-15 5.2E-20 154.1 -9.6 144 374-545 34-191 (274)
140 3ec2_A DNA replication protein 99.4 1.6E-13 5.4E-18 129.9 4.5 111 380-561 32-144 (180)
141 3lda_A DNA repair protein RAD5 99.4 3.1E-13 1.1E-17 143.8 6.8 152 375-576 166-364 (400)
142 2kjq_A DNAA-related protein; s 99.4 5.8E-13 2E-17 122.4 6.6 91 375-559 30-124 (149)
143 2yv5_A YJEQ protein; hydrolase 99.3 1.7E-13 5.8E-18 140.9 1.4 115 382-514 161-300 (302)
144 3lnc_A Guanylate kinase, GMP k 99.3 1.6E-14 5.4E-19 142.6 -7.9 185 374-586 15-222 (231)
145 1u0l_A Probable GTPase ENGC; p 99.2 3.2E-12 1.1E-16 131.4 3.3 103 381-484 164-290 (301)
146 1ls1_A Signal recognition part 99.2 1.2E-11 4.3E-16 126.5 7.0 143 360-558 77-220 (295)
147 1sq5_A Pantothenate kinase; P- 99.2 4.9E-13 1.7E-17 137.9 -5.6 92 357-456 35-151 (308)
148 1udx_A The GTP-binding protein 99.2 7.9E-12 2.7E-16 133.5 3.1 153 376-558 147-306 (416)
149 1cke_A CK, MSSA, protein (cyti 99.1 1.1E-12 3.8E-17 128.5 -5.4 129 385-530 4-151 (227)
150 2px0_A Flagellar biosynthesis 99.1 9.8E-11 3.4E-15 119.8 8.1 139 384-580 103-247 (296)
151 3euj_A Chromosome partition pr 99.1 2.9E-11 9.8E-16 131.0 4.1 64 361-428 8-71 (483)
152 1vma_A Cell division protein F 99.1 2E-10 6.9E-15 117.9 9.1 98 379-530 97-197 (306)
153 1t9h_A YLOQ, probable GTPase E 99.1 1.7E-11 5.7E-16 125.8 0.3 73 381-455 168-248 (307)
154 1ni3_A YCHF GTPase, YCHF GTP-b 99.1 1E-12 3.5E-17 139.2 -9.3 165 382-583 16-208 (392)
155 3tr0_A Guanylate kinase, GMP k 99.0 2.9E-11 9.8E-16 116.3 0.9 72 380-455 1-73 (205)
156 1iy2_A ATP-dependent metallopr 99.0 4.9E-13 1.7E-17 135.7 -12.3 142 361-529 51-195 (278)
157 4e22_A Cytidylate kinase; P-lo 99.0 4.2E-11 1.4E-15 119.8 0.5 78 375-455 19-114 (252)
158 3a00_A Guanylate kinase, GMP k 99.0 2.2E-11 7.6E-16 115.9 -1.8 132 386-527 1-169 (186)
159 1ixz_A ATP-dependent metallopr 99.0 8.4E-13 2.9E-17 132.0 -12.5 138 361-530 27-172 (254)
160 2dr3_A UPF0273 protein PH0284; 99.0 3E-10 1E-14 112.2 5.0 168 373-574 9-196 (247)
161 3k1j_A LON protease, ATP-depen 99.0 2.9E-11 1E-15 136.0 -2.6 157 373-546 47-227 (604)
162 1in4_A RUVB, holliday junction 99.0 1.4E-12 4.7E-17 136.1 -12.7 159 364-548 23-193 (334)
163 1oix_A RAS-related protein RAB 99.0 1.3E-10 4.6E-15 110.7 1.7 142 388-546 31-188 (191)
164 1qhl_A Protein (cell division 98.9 3.6E-11 1.2E-15 118.0 -4.5 75 359-442 9-91 (227)
165 2r6a_A DNAB helicase, replicat 98.9 2.2E-09 7.4E-14 116.6 8.2 179 373-578 190-402 (454)
166 2zr9_A Protein RECA, recombina 98.9 6.7E-09 2.3E-13 108.7 11.2 75 508-582 126-237 (349)
167 2ius_A DNA translocase FTSK; n 98.9 1.6E-10 5.4E-15 126.0 -1.4 162 378-561 159-343 (512)
168 3ney_A 55 kDa erythrocyte memb 98.8 2.1E-10 7E-15 110.0 -2.2 72 382-459 15-99 (197)
169 1svm_A Large T antigen; AAA+ f 98.7 1E-10 3.5E-15 123.4 -7.5 141 374-530 157-312 (377)
170 2qt1_A Nicotinamide riboside k 98.7 3.2E-09 1.1E-13 102.4 3.3 77 380-482 15-91 (207)
171 1kgd_A CASK, peripheral plasma 98.7 4.9E-10 1.7E-14 105.9 -2.7 71 385-459 4-85 (180)
172 2f9l_A RAB11B, member RAS onco 98.7 5.7E-09 1.9E-13 99.7 4.0 35 510-546 130-164 (199)
173 2dy1_A Elongation factor G; tr 98.7 7.6E-09 2.6E-13 117.4 4.5 76 380-456 3-80 (665)
174 3nwj_A ATSK2; P loop, shikimat 98.6 2.9E-09 9.9E-14 106.1 -0.4 52 359-410 17-72 (250)
175 3tau_A Guanylate kinase, GMP k 98.6 3.5E-08 1.2E-12 95.4 4.6 71 384-458 6-87 (208)
176 2ce7_A Cell division protein F 98.5 1.1E-07 3.8E-12 103.1 8.2 69 504-572 93-183 (476)
177 4eun_A Thermoresistant glucoki 98.5 1.2E-08 4.2E-13 97.9 0.5 61 381-446 24-84 (200)
178 2qtf_A Protein HFLX, GTP-bindi 98.5 1.1E-07 3.7E-12 100.0 6.8 143 388-547 181-351 (364)
179 3uie_A Adenylyl-sulfate kinase 98.5 4E-09 1.4E-13 101.3 -4.0 61 363-425 3-65 (200)
180 2j41_A Guanylate kinase; GMP, 98.5 4.3E-08 1.5E-12 94.0 3.0 62 381-445 1-62 (207)
181 2dhr_A FTSH; AAA+ protein, hex 98.4 5.1E-09 1.8E-13 114.3 -5.3 138 362-531 43-188 (499)
182 3cr8_A Sulfate adenylyltranfer 98.4 1.4E-08 4.8E-13 112.2 -2.0 72 381-457 364-447 (552)
183 1zu4_A FTSY; GTPase, signal re 98.4 5.3E-08 1.8E-12 100.5 1.9 68 376-443 95-172 (320)
184 3t34_A Dynamin-related protein 98.4 9.3E-07 3.2E-11 92.8 9.9 47 374-423 25-73 (360)
185 3hr8_A Protein RECA; alpha and 98.4 6.2E-07 2.1E-11 93.6 8.3 68 374-444 47-117 (356)
186 3tqc_A Pantothenate kinase; bi 98.3 3.1E-08 1.1E-12 102.0 -2.9 126 373-534 73-211 (321)
187 3kta_A Chromosome segregation 98.3 1.2E-07 3.9E-12 89.3 0.8 67 377-444 18-90 (182)
188 2e87_A Hypothetical protein PH 98.3 1.6E-06 5.5E-11 90.8 9.4 61 500-561 230-293 (357)
189 3vaa_A Shikimate kinase, SK; s 98.3 3.1E-07 1.1E-11 87.8 3.5 39 372-410 11-49 (199)
190 1jjv_A Dephospho-COA kinase; P 98.2 4.1E-07 1.4E-11 87.3 3.5 70 502-574 60-132 (206)
191 2vp4_A Deoxynucleoside kinase; 98.2 5.4E-08 1.8E-12 95.6 -3.1 65 379-447 13-87 (230)
192 3ice_A Transcription terminati 98.2 1.5E-07 5.3E-12 98.0 0.2 54 357-410 131-198 (422)
193 2xau_A PRE-mRNA-splicing facto 98.2 1.8E-06 6.1E-11 99.5 7.7 66 500-565 189-257 (773)
194 2eyu_A Twitching motility prot 98.1 6.4E-07 2.2E-11 89.7 2.8 59 509-573 88-146 (261)
195 4a1f_A DNAB helicase, replicat 98.1 3.7E-06 1.3E-10 87.1 8.4 37 374-410 34-70 (338)
196 2ffh_A Protein (FFH); SRP54, s 98.1 6.4E-06 2.2E-10 87.9 10.5 161 362-558 79-246 (425)
197 3kl4_A SRP54, signal recogniti 98.1 5.2E-06 1.8E-10 88.8 9.3 40 385-424 96-135 (433)
198 1knq_A Gluconate kinase; ALFA/ 98.1 4.1E-07 1.4E-11 84.9 0.6 38 384-425 6-43 (175)
199 2z43_A DNA repair and recombin 98.0 2.9E-06 1E-10 87.7 4.7 36 374-409 94-130 (324)
200 1rz3_A Hypothetical protein rb 98.0 1.2E-06 4E-11 84.0 1.5 47 382-428 18-64 (201)
201 1fnn_A CDC6P, cell division co 98.0 1.7E-05 5.7E-10 83.2 9.5 45 518-563 124-172 (389)
202 1v5w_A DMC1, meiotic recombina 97.8 1.8E-05 6E-10 82.4 6.3 28 382-409 118-145 (343)
203 3b9p_A CG5977-PA, isoform A; A 97.8 8.7E-05 3E-09 75.1 11.4 70 504-573 98-187 (297)
204 1f6b_A SAR1; gtpases, N-termin 97.8 6.7E-06 2.3E-10 78.2 2.0 57 366-423 6-70 (198)
205 2pez_A Bifunctional 3'-phospho 97.8 2.7E-06 9.2E-11 79.6 -0.9 40 384-424 3-44 (179)
206 3m6a_A ATP-dependent protease 97.7 5.3E-06 1.8E-10 91.8 0.8 68 374-442 97-164 (543)
207 3lxx_A GTPase IMAP family memb 97.7 0.0002 6.8E-09 70.1 11.6 28 388-415 31-58 (239)
208 2z4s_A Chromosomal replication 97.7 4.5E-05 1.5E-09 82.1 7.4 42 519-560 194-237 (440)
209 1mky_A Probable GTP-binding pr 97.7 2.1E-05 7.3E-10 84.6 4.6 70 387-456 181-263 (439)
210 2p67_A LAO/AO transport system 97.6 6.9E-06 2.4E-10 85.5 -0.2 52 374-425 44-95 (341)
211 2qby_A CDC6 homolog 1, cell di 97.6 2.4E-05 8.2E-10 81.7 3.7 30 384-413 43-72 (386)
212 3bh0_A DNAB-like replicative h 97.6 3E-05 1E-09 79.7 4.3 36 373-408 55-90 (315)
213 1ega_A Protein (GTP-binding pr 97.6 6.2E-05 2.1E-09 76.8 6.3 145 385-564 7-163 (301)
214 1kag_A SKI, shikimate kinase I 97.6 2.6E-05 8.8E-10 72.2 3.0 33 385-421 3-35 (173)
215 3llm_A ATP-dependent RNA helic 97.6 3.5E-05 1.2E-09 75.5 3.8 143 383-562 73-222 (235)
216 4eaq_A DTMP kinase, thymidylat 97.5 2.1E-05 7.3E-10 77.0 1.9 43 376-419 13-58 (229)
217 1m7g_A Adenylylsulfate kinase; 97.5 1E-05 3.5E-10 77.9 -0.6 43 381-423 20-64 (211)
218 2qor_A Guanylate kinase; phosp 97.5 1.7E-05 5.7E-10 76.0 0.5 30 382-411 8-37 (204)
219 2www_A Methylmalonic aciduria 97.5 2.4E-05 8.1E-10 81.7 1.4 43 384-426 72-114 (349)
220 2w58_A DNAI, primosome compone 97.5 0.00011 3.8E-09 69.8 5.7 26 387-412 55-80 (202)
221 1l8q_A Chromosomal replication 97.4 0.00018 6.2E-09 73.8 7.3 28 385-412 36-63 (324)
222 1m2o_B GTP-binding protein SAR 97.4 8.6E-05 2.9E-09 69.9 4.3 49 374-423 12-68 (190)
223 1u94_A RECA protein, recombina 97.4 0.0007 2.4E-08 70.6 11.0 39 372-410 47-87 (356)
224 2gj8_A MNME, tRNA modification 97.4 0.00011 3.9E-09 67.9 4.3 27 384-410 2-28 (172)
225 3r20_A Cytidylate kinase; stru 97.4 1.4E-05 4.9E-10 78.3 -2.0 71 385-455 8-96 (233)
226 3qf4_B Uncharacterized ABC tra 97.3 0.29 1E-05 54.3 32.5 101 19-124 16-116 (598)
227 3cf0_A Transitional endoplasmi 97.3 0.00058 2E-08 69.4 8.6 31 380-410 43-73 (301)
228 3qf4_A ABC transporter, ATP-bi 97.3 0.36 1.2E-05 53.5 32.0 40 24-63 14-53 (587)
229 4fcw_A Chaperone protein CLPB; 97.3 0.00038 1.3E-08 70.6 7.3 31 386-416 47-77 (311)
230 1sxj_C Activator 1 40 kDa subu 97.2 1.5E-05 5E-10 82.7 -3.6 69 373-441 31-102 (340)
231 1f2t_A RAD50 ABC-ATPase; DNA d 97.2 0.00014 4.9E-09 66.0 3.3 29 379-408 17-45 (149)
232 1y63_A LMAJ004144AAA protein; 97.2 0.00014 4.8E-09 68.3 3.3 32 378-409 2-33 (184)
233 1sxj_D Activator 1 41 kDa subu 97.2 7.4E-05 2.5E-09 77.3 1.3 42 519-561 133-174 (353)
234 1j8m_F SRP54, signal recogniti 97.1 6.4E-05 2.2E-09 76.5 -0.0 49 377-426 89-138 (297)
235 3h4m_A Proteasome-activating n 97.1 0.00067 2.3E-08 67.9 7.5 28 383-410 48-75 (285)
236 3bos_A Putative DNA replicatio 97.1 0.00016 5.6E-09 69.9 2.7 27 385-411 51-77 (242)
237 2jaq_A Deoxyguanosine kinase; 97.1 3.1E-05 1E-09 73.5 -3.2 22 388-409 2-23 (205)
238 2ohf_A Protein OLA1, GTP-bindi 97.1 0.00026 8.9E-09 74.6 3.7 41 382-422 18-69 (396)
239 2yvu_A Probable adenylyl-sulfa 97.1 0.00015 5.3E-09 67.9 1.7 40 382-421 9-49 (186)
240 3n70_A Transport activator; si 97.0 0.0018 6.3E-08 58.1 8.6 29 384-412 22-50 (145)
241 2wji_A Ferrous iron transport 97.0 0.00055 1.9E-08 62.6 5.1 25 387-411 4-28 (165)
242 1njg_A DNA polymerase III subu 97.0 0.0014 4.8E-08 62.8 8.2 44 518-562 125-168 (250)
243 1lw7_A Transcriptional regulat 97.0 1.6E-05 5.4E-10 83.5 -6.5 87 501-589 258-356 (365)
244 3t61_A Gluconokinase; PSI-biol 97.0 0.00016 5.6E-09 68.7 1.2 34 386-423 18-51 (202)
245 2p5t_B PEZT; postsegregational 97.0 0.00017 5.8E-09 71.5 1.1 41 382-424 28-68 (253)
246 2wjg_A FEOB, ferrous iron tran 96.9 0.00042 1.4E-08 64.4 3.6 23 387-409 8-30 (188)
247 1ypw_A Transitional endoplasmi 96.9 9.4E-05 3.2E-09 85.6 -1.1 61 380-442 232-292 (806)
248 4dcu_A GTP-binding protein ENG 96.9 0.00058 2E-08 73.7 5.1 57 504-563 87-144 (456)
249 2qag_A Septin-2, protein NEDD5 96.9 7.6E-05 2.6E-09 78.2 -1.9 57 358-421 16-72 (361)
250 4a82_A Cystic fibrosis transme 96.9 0.097 3.3E-06 58.0 23.0 37 33-69 6-42 (578)
251 2q6t_A DNAB replication FORK h 96.9 0.0019 6.4E-08 69.4 8.5 153 374-557 188-358 (444)
252 1lv7_A FTSH; alpha/beta domain 96.9 0.00014 4.7E-09 72.0 -0.5 45 376-424 37-81 (257)
253 1ex7_A Guanylate kinase; subst 96.8 0.00037 1.3E-08 65.8 2.2 45 389-435 4-61 (186)
254 1np6_A Molybdopterin-guanine d 96.8 0.00044 1.5E-08 64.6 2.4 38 386-423 6-46 (174)
255 2zej_A Dardarin, leucine-rich 96.8 0.00064 2.2E-08 63.3 3.4 26 388-413 4-29 (184)
256 2if2_A Dephospho-COA kinase; a 96.7 0.00059 2E-08 64.8 2.9 21 388-408 3-23 (204)
257 2ga8_A Hypothetical 39.9 kDa p 96.7 0.00027 9.3E-09 73.2 0.2 37 374-410 10-48 (359)
258 3qks_A DNA double-strand break 96.7 0.00078 2.7E-08 64.4 3.3 28 379-407 17-44 (203)
259 3dm5_A SRP54, signal recogniti 96.7 0.01 3.5E-07 63.4 12.1 35 385-419 99-133 (443)
260 3cm0_A Adenylate kinase; ATP-b 96.7 0.00076 2.6E-08 62.9 3.0 27 384-410 2-28 (186)
261 3uk6_A RUVB-like 2; hexameric 96.7 0.002 6.8E-08 66.9 6.5 38 384-421 68-105 (368)
262 2ewv_A Twitching motility prot 96.7 0.00063 2.2E-08 71.4 2.6 56 509-570 199-254 (372)
263 1qhx_A CPT, protein (chloramph 96.6 0.001 3.4E-08 61.5 3.7 27 385-411 2-28 (178)
264 3syl_A Protein CBBX; photosynt 96.6 0.013 4.4E-07 59.1 11.6 26 385-410 66-91 (309)
265 3ihw_A Centg3; RAS, centaurin, 96.5 0.0021 7.3E-08 59.8 5.1 36 388-423 22-66 (184)
266 2v1u_A Cell division control p 96.5 0.0011 3.8E-08 68.9 3.3 28 384-411 42-69 (387)
267 1uf9_A TT1252 protein; P-loop, 96.5 0.0011 3.9E-08 62.4 3.1 33 386-423 8-40 (203)
268 2qz4_A Paraplegin; AAA+, SPG7, 96.5 0.0099 3.4E-07 58.3 10.0 27 384-410 37-63 (262)
269 3kb2_A SPBC2 prophage-derived 96.5 0.0013 4.4E-08 60.2 3.2 24 387-410 2-25 (173)
270 2b8t_A Thymidine kinase; deoxy 96.4 0.0022 7.7E-08 62.2 4.7 50 519-572 89-149 (223)
271 3b5x_A Lipid A export ATP-bind 96.4 1.6 5.3E-05 48.2 36.8 33 314-346 291-323 (582)
272 1xp8_A RECA protein, recombina 96.4 0.0083 2.8E-07 62.6 9.3 27 382-408 70-96 (366)
273 1kht_A Adenylate kinase; phosp 96.4 0.0017 5.7E-08 60.6 3.6 26 385-410 2-27 (192)
274 1jal_A YCHF protein; nucleotid 96.4 0.0024 8.3E-08 66.5 5.1 36 386-421 2-48 (363)
275 1q3t_A Cytidylate kinase; nucl 96.4 0.0016 5.4E-08 63.6 3.5 26 383-408 13-38 (236)
276 3b60_A Lipid A export ATP-bind 96.4 1.6 5.6E-05 48.1 34.7 144 198-346 178-323 (582)
277 3trf_A Shikimate kinase, SK; a 96.4 0.0017 5.9E-08 60.4 3.5 26 385-410 4-29 (185)
278 4ag6_A VIRB4 ATPase, type IV s 96.3 0.002 6.9E-08 67.9 4.0 57 519-575 262-335 (392)
279 2rhm_A Putative kinase; P-loop 96.3 0.0016 5.6E-08 60.8 2.9 27 384-410 3-29 (193)
280 3d8b_A Fidgetin-like protein 1 96.3 0.0089 3E-07 62.2 8.7 27 384-410 115-141 (357)
281 1gvn_B Zeta; postsegregational 96.3 0.0021 7.2E-08 64.9 3.8 36 384-421 31-66 (287)
282 2v54_A DTMP kinase, thymidylat 96.3 0.0022 7.7E-08 60.5 3.8 27 384-410 2-28 (204)
283 1gtv_A TMK, thymidylate kinase 96.3 0.00053 1.8E-08 65.5 -0.7 26 388-413 2-27 (214)
284 1fzq_A ADP-ribosylation factor 96.3 0.0019 6.6E-08 59.9 3.1 24 386-409 16-39 (181)
285 3lw7_A Adenylate kinase relate 96.3 0.002 7E-08 58.7 3.2 19 388-406 3-21 (179)
286 3iij_A Coilin-interacting nucl 96.2 0.0015 5.2E-08 60.6 2.2 27 384-410 9-35 (180)
287 1vht_A Dephospho-COA kinase; s 96.2 0.0022 7.5E-08 61.6 3.3 24 385-408 3-26 (218)
288 3bgw_A DNAB-like replicative h 96.2 0.0033 1.1E-07 67.5 4.9 35 374-408 185-219 (444)
289 1ko7_A HPR kinase/phosphatase; 96.2 0.0019 6.7E-08 65.7 2.8 34 374-408 133-166 (314)
290 2chg_A Replication factor C sm 96.2 0.0081 2.8E-07 56.6 7.0 42 519-561 102-143 (226)
291 2vhj_A Ntpase P4, P4; non- hyd 96.2 0.0067 2.3E-07 61.9 6.6 28 381-408 118-145 (331)
292 2c95_A Adenylate kinase 1; tra 96.1 0.0026 9E-08 59.5 3.2 27 384-410 7-33 (196)
293 2wwf_A Thymidilate kinase, put 96.1 0.0029 1E-07 60.1 3.4 27 384-410 8-34 (212)
294 3zvl_A Bifunctional polynucleo 96.1 0.028 9.6E-07 59.7 11.4 30 381-410 253-282 (416)
295 2plr_A DTMP kinase, probable t 96.0 0.0032 1.1E-07 59.6 3.5 28 385-412 3-30 (213)
296 1nn5_A Similar to deoxythymidy 96.0 0.0032 1.1E-07 59.8 3.4 28 383-410 6-33 (215)
297 1via_A Shikimate kinase; struc 96.0 0.0027 9.3E-08 58.6 2.7 23 388-410 6-28 (175)
298 2ze6_A Isopentenyl transferase 96.0 0.003 1E-07 62.5 3.1 24 387-410 2-25 (253)
299 2bwj_A Adenylate kinase 5; pho 96.0 0.0015 5.2E-08 61.4 0.8 29 382-410 8-36 (199)
300 3cmw_A Protein RECA, recombina 96.0 0.026 8.9E-07 69.4 11.6 33 383-415 729-761 (1706)
301 1ly1_A Polynucleotide kinase; 96.0 0.0037 1.3E-07 57.6 3.3 22 387-408 3-24 (181)
302 1tev_A UMP-CMP kinase; ploop, 95.9 0.004 1.4E-07 58.1 3.4 26 385-410 2-27 (196)
303 2lkc_A Translation initiation 95.9 0.01 3.5E-07 54.1 6.0 26 384-409 6-31 (178)
304 2vli_A Antibiotic resistance p 95.8 0.0032 1.1E-07 58.3 2.4 27 384-410 3-29 (183)
305 1nks_A Adenylate kinase; therm 95.7 0.0047 1.6E-07 57.5 3.1 24 388-411 3-26 (194)
306 2erx_A GTP-binding protein DI- 95.7 0.009 3.1E-07 53.9 5.0 21 388-408 5-25 (172)
307 1aky_A Adenylate kinase; ATP:A 95.7 0.0056 1.9E-07 58.7 3.7 27 384-410 2-28 (220)
308 3co5_A Putative two-component 95.7 0.016 5.6E-07 51.6 6.4 27 384-410 25-51 (143)
309 3cbq_A GTP-binding protein REM 95.7 0.0047 1.6E-07 58.1 2.9 22 388-409 25-46 (195)
310 1xjc_A MOBB protein homolog; s 95.7 0.0036 1.2E-07 58.0 2.0 35 387-421 5-42 (169)
311 1zd8_A GTP:AMP phosphotransfer 95.6 0.0059 2E-07 59.0 3.4 27 384-410 5-31 (227)
312 2cdn_A Adenylate kinase; phosp 95.6 0.0068 2.3E-07 57.2 3.7 26 385-410 19-44 (201)
313 3k53_A Ferrous iron transport 95.6 0.0054 1.8E-07 61.1 3.1 24 388-411 5-28 (271)
314 1zuh_A Shikimate kinase; alpha 95.6 0.0068 2.3E-07 55.4 3.4 25 386-410 7-31 (168)
315 1z2a_A RAS-related protein RAB 95.6 0.0062 2.1E-07 54.8 3.1 22 388-409 7-28 (168)
316 2z0h_A DTMP kinase, thymidylat 95.6 0.0063 2.2E-07 56.9 3.3 23 388-410 2-24 (197)
317 3fb4_A Adenylate kinase; psych 95.6 0.0062 2.1E-07 58.1 3.3 23 388-410 2-24 (216)
318 2iyv_A Shikimate kinase, SK; t 95.5 0.0058 2E-07 56.7 2.9 25 386-410 2-26 (184)
319 3ake_A Cytidylate kinase; CMP 95.5 0.006 2.1E-07 57.6 3.1 23 388-410 4-26 (208)
320 3q72_A GTP-binding protein RAD 95.5 0.0057 2E-07 55.1 2.8 23 388-410 4-26 (166)
321 2dby_A GTP-binding protein; GD 95.5 0.0053 1.8E-07 64.2 2.8 22 388-409 3-24 (368)
322 2ged_A SR-beta, signal recogni 95.5 0.0065 2.2E-07 56.5 3.2 25 386-410 48-72 (193)
323 1e6c_A Shikimate kinase; phosp 95.5 0.0066 2.3E-07 55.5 3.2 24 387-410 3-26 (173)
324 1z0j_A RAB-22, RAS-related pro 95.5 0.0099 3.4E-07 53.6 4.3 23 388-410 8-30 (170)
325 1zak_A Adenylate kinase; ATP:A 95.5 0.006 2E-07 58.7 2.9 26 385-410 4-29 (222)
326 2nzj_A GTP-binding protein REM 95.5 0.0073 2.5E-07 54.9 3.4 23 388-410 6-28 (175)
327 3auy_A DNA double-strand break 95.5 0.0072 2.5E-07 63.2 3.7 30 377-407 17-46 (371)
328 1kao_A RAP2A; GTP-binding prot 95.5 0.0071 2.4E-07 54.2 3.2 22 388-409 5-26 (167)
329 1ukz_A Uridylate kinase; trans 95.5 0.007 2.4E-07 57.1 3.2 26 385-410 14-39 (203)
330 3q85_A GTP-binding protein REM 95.4 0.0076 2.6E-07 54.5 3.3 23 388-410 4-26 (169)
331 3lxw_A GTPase IMAP family memb 95.4 0.0072 2.5E-07 59.4 3.3 24 387-410 22-45 (247)
332 2pt5_A Shikimate kinase, SK; a 95.4 0.0078 2.7E-07 54.8 3.3 23 388-410 2-24 (168)
333 2dyk_A GTP-binding protein; GT 95.4 0.0076 2.6E-07 53.9 3.2 23 388-410 3-25 (161)
334 3dl0_A Adenylate kinase; phosp 95.4 0.0074 2.5E-07 57.6 3.3 23 388-410 2-24 (216)
335 2ce2_X GTPase HRAS; signaling 95.4 0.0071 2.4E-07 54.1 2.9 22 388-409 5-26 (166)
336 1u8z_A RAS-related protein RAL 95.4 0.0077 2.6E-07 54.0 3.1 22 388-409 6-27 (168)
337 1qf9_A UMP/CMP kinase, protein 95.4 0.0079 2.7E-07 55.9 3.2 25 386-410 6-30 (194)
338 2grj_A Dephospho-COA kinase; T 95.4 0.0081 2.8E-07 56.8 3.3 23 387-409 13-35 (192)
339 2pbr_A DTMP kinase, thymidylat 95.4 0.0081 2.8E-07 55.9 3.3 23 388-410 2-24 (195)
340 2ew1_A RAS-related protein RAB 95.3 0.015 5E-07 55.0 5.1 22 388-409 28-49 (201)
341 3iby_A Ferrous iron transport 95.3 0.0081 2.8E-07 59.4 3.4 23 388-410 3-25 (256)
342 1z08_A RAS-related protein RAB 95.3 0.0083 2.8E-07 54.2 3.2 22 388-409 8-29 (170)
343 3a4m_A L-seryl-tRNA(SEC) kinas 95.3 0.0085 2.9E-07 59.3 3.5 26 384-409 2-27 (260)
344 1c1y_A RAS-related protein RAP 95.3 0.0083 2.8E-07 53.9 3.1 22 388-409 5-26 (167)
345 2yl4_A ATP-binding cassette SU 95.3 4.4 0.00015 44.7 37.3 42 24-65 10-51 (595)
346 1ek0_A Protein (GTP-binding pr 95.3 0.0084 2.9E-07 54.0 3.1 23 388-410 5-27 (170)
347 1g16_A RAS-related protein SEC 95.3 0.0078 2.7E-07 54.3 2.9 22 388-409 5-26 (170)
348 1a7j_A Phosphoribulokinase; tr 95.3 0.0045 1.6E-07 62.5 1.4 26 385-410 4-29 (290)
349 1ky3_A GTP-binding protein YPT 95.3 0.0087 3E-07 54.6 3.2 23 388-410 10-32 (182)
350 3tw8_B RAS-related protein RAB 95.3 0.0085 2.9E-07 54.6 3.1 22 388-409 11-32 (181)
351 1wms_A RAB-9, RAB9, RAS-relate 95.3 0.0088 3E-07 54.5 3.2 22 388-409 9-30 (177)
352 2oil_A CATX-8, RAS-related pro 95.3 0.012 4.3E-07 54.6 4.3 22 388-409 27-48 (193)
353 3tlx_A Adenylate kinase 2; str 95.2 0.0093 3.2E-07 58.4 3.4 26 385-410 28-53 (243)
354 3b1v_A Ferrous iron uptake tra 95.2 0.0091 3.1E-07 59.7 3.4 24 387-410 4-27 (272)
355 2fn4_A P23, RAS-related protei 95.2 0.0085 2.9E-07 54.6 2.9 22 388-409 11-32 (181)
356 1svi_A GTP-binding protein YSX 95.2 0.0084 2.9E-07 55.7 2.9 24 386-409 23-46 (195)
357 3pxi_A Negative regulator of g 95.2 0.032 1.1E-06 64.0 8.3 23 388-410 523-545 (758)
358 3t5d_A Septin-7; GTP-binding p 95.2 0.0082 2.8E-07 59.9 2.9 23 388-410 10-32 (274)
359 1uj2_A Uridine-cytidine kinase 95.2 0.0094 3.2E-07 58.6 3.3 24 387-410 23-46 (252)
360 1r2q_A RAS-related protein RAB 95.2 0.0098 3.4E-07 53.5 3.1 22 388-409 8-29 (170)
361 2r8r_A Sensor protein; KDPD, P 95.2 0.015 5E-07 56.3 4.4 24 385-408 4-28 (228)
362 3pqc_A Probable GTP-binding pr 95.2 0.0089 3E-07 55.3 2.9 24 387-410 24-47 (195)
363 4dsu_A GTPase KRAS, isoform 2B 95.1 0.01 3.6E-07 54.5 3.2 22 388-409 6-27 (189)
364 3clv_A RAB5 protein, putative; 95.1 0.01 3.6E-07 55.1 3.2 22 388-409 9-30 (208)
365 1r8s_A ADP-ribosylation factor 95.1 0.011 3.7E-07 53.1 3.1 21 388-408 2-22 (164)
366 2cxx_A Probable GTP-binding pr 95.1 0.0098 3.3E-07 54.9 2.9 23 388-410 3-25 (190)
367 2hxs_A RAB-26, RAS-related pro 95.1 0.012 4.1E-07 53.6 3.4 22 388-409 8-29 (178)
368 1m7b_A RND3/RHOE small GTP-bin 95.1 0.016 5.4E-07 53.5 4.3 22 388-409 9-30 (184)
369 3bc1_A RAS-related protein RAB 95.1 0.011 3.7E-07 54.6 3.1 22 388-409 13-34 (195)
370 3t1o_A Gliding protein MGLA; G 95.1 0.011 3.9E-07 54.7 3.3 25 388-412 16-40 (198)
371 1upt_A ARL1, ADP-ribosylation 95.0 0.011 3.8E-07 53.3 3.1 24 385-408 6-29 (171)
372 3a8t_A Adenylate isopentenyltr 95.0 0.013 4.5E-07 60.1 3.8 28 384-411 38-65 (339)
373 1ypw_A Transitional endoplasmi 95.0 0.0016 5.6E-08 75.2 -3.4 46 379-426 504-549 (806)
374 2g6b_A RAS-related protein RAB 95.0 0.012 4.1E-07 53.7 3.1 23 388-410 12-34 (180)
375 2y8e_A RAB-protein 6, GH09086P 95.0 0.011 3.8E-07 53.7 2.9 22 388-409 16-37 (179)
376 2f6r_A COA synthase, bifunctio 95.0 0.011 3.8E-07 59.3 3.1 23 386-408 75-97 (281)
377 3be4_A Adenylate kinase; malar 94.9 0.012 4.2E-07 56.3 3.2 26 385-410 4-29 (217)
378 1z0f_A RAB14, member RAS oncog 94.9 0.013 4.4E-07 53.3 3.1 23 388-410 17-39 (179)
379 1wf3_A GTP-binding protein; GT 94.9 0.012 4.3E-07 59.6 3.3 22 388-409 9-30 (301)
380 3con_A GTPase NRAS; structural 94.9 0.013 4.4E-07 54.3 3.1 22 388-409 23-44 (190)
381 2efe_B Small GTP-binding prote 94.9 0.013 4.5E-07 53.5 3.2 22 388-409 14-35 (181)
382 3t5g_A GTP-binding protein RHE 94.9 0.021 7.3E-07 52.2 4.6 21 388-408 8-28 (181)
383 2a9k_A RAS-related protein RAL 94.9 0.013 4.5E-07 53.7 3.1 22 388-409 20-41 (187)
384 1moz_A ARL1, ADP-ribosylation 94.8 0.0089 3.1E-07 54.8 1.8 24 385-408 17-40 (183)
385 2qmh_A HPR kinase/phosphorylas 94.8 0.018 6.3E-07 54.5 4.0 35 375-410 24-58 (205)
386 2bme_A RAB4A, RAS-related prot 94.8 0.013 4.6E-07 53.8 2.9 22 388-409 12-33 (186)
387 2xtp_A GTPase IMAP family memb 94.8 0.014 4.7E-07 57.5 3.1 24 387-410 23-46 (260)
388 2gf9_A RAS-related protein RAB 94.8 0.015 5E-07 54.0 3.1 22 388-409 24-45 (189)
389 3kkq_A RAS-related protein M-R 94.8 0.015 5E-07 53.4 3.1 22 388-409 20-41 (183)
390 1jr3_A DNA polymerase III subu 94.8 0.05 1.7E-06 56.1 7.6 42 519-561 119-160 (373)
391 1sky_E F1-ATPase, F1-ATP synth 94.7 0.0076 2.6E-07 64.6 1.2 43 375-418 141-183 (473)
392 2bov_A RAla, RAS-related prote 94.7 0.015 5.2E-07 54.4 3.1 22 388-409 16-37 (206)
393 4bas_A ADP-ribosylation factor 94.7 0.021 7E-07 53.1 4.1 23 387-409 18-40 (199)
394 3cmu_A Protein RECA, recombina 94.7 0.1 3.4E-06 65.2 11.0 38 374-411 369-408 (2050)
395 1ksh_A ARF-like protein 2; sma 94.7 0.016 5.4E-07 53.4 3.2 26 384-409 16-41 (186)
396 1vg8_A RAS-related protein RAB 94.7 0.016 5.3E-07 54.4 3.2 23 388-410 10-32 (207)
397 1nrj_B SR-beta, signal recogni 94.7 0.015 5.2E-07 55.2 3.1 24 387-410 13-36 (218)
398 2fg5_A RAB-22B, RAS-related pr 94.7 0.015 5E-07 54.2 2.9 22 388-409 25-46 (192)
399 2cjw_A GTP-binding protein GEM 94.7 0.015 5.3E-07 54.3 3.1 22 388-409 8-29 (192)
400 3iev_A GTP-binding protein ERA 94.7 0.015 5.3E-07 59.0 3.3 23 387-409 11-33 (308)
401 1e4v_A Adenylate kinase; trans 94.7 0.015 5.2E-07 55.5 3.0 23 388-410 2-24 (214)
402 1z06_A RAS-related protein RAB 94.7 0.016 5.6E-07 53.6 3.2 22 388-409 22-43 (189)
403 3cmu_A Protein RECA, recombina 94.7 0.12 4E-06 64.6 11.4 37 372-408 1065-1103(2050)
404 2xb4_A Adenylate kinase; ATP-b 94.7 0.017 5.7E-07 55.7 3.3 23 388-410 2-24 (223)
405 2gf0_A GTP-binding protein DI- 94.6 0.015 5.2E-07 54.0 2.9 22 387-408 9-30 (199)
406 1zbd_A Rabphilin-3A; G protein 94.6 0.017 5.9E-07 54.1 3.3 22 388-409 10-31 (203)
407 1jbk_A CLPB protein; beta barr 94.6 0.018 6.3E-07 52.7 3.5 27 384-410 41-67 (195)
408 2h92_A Cytidylate kinase; ross 94.6 0.014 4.7E-07 55.8 2.7 25 386-410 3-27 (219)
409 1ak2_A Adenylate kinase isoenz 94.6 0.019 6.6E-07 55.6 3.7 26 385-410 15-40 (233)
410 1mh1_A RAC1; GTP-binding, GTPa 94.6 0.017 5.8E-07 52.9 3.1 21 388-408 7-27 (186)
411 3oes_A GTPase rhebl1; small GT 94.6 0.016 5.4E-07 54.4 2.9 24 387-410 25-48 (201)
412 4dhe_A Probable GTP-binding pr 94.6 0.0095 3.3E-07 56.8 1.4 25 386-410 29-53 (223)
413 2il1_A RAB12; G-protein, GDP, 94.6 0.017 5.7E-07 53.9 3.1 22 388-409 28-49 (192)
414 3tkl_A RAS-related protein RAB 94.6 0.022 7.6E-07 52.8 3.9 23 388-410 18-40 (196)
415 1gwn_A RHO-related GTP-binding 94.6 0.025 8.5E-07 53.6 4.3 22 388-409 30-51 (205)
416 2qu8_A Putative nucleolar GTP- 94.6 0.017 5.9E-07 55.5 3.2 23 387-409 30-52 (228)
417 3v9p_A DTMP kinase, thymidylat 94.6 0.016 5.4E-07 56.3 2.9 29 383-411 22-50 (227)
418 3u61_B DNA polymerase accessor 94.5 0.097 3.3E-06 53.1 9.0 43 519-562 105-148 (324)
419 3i8s_A Ferrous iron transport 94.5 0.017 5.8E-07 57.7 3.1 23 388-410 5-27 (274)
420 3dz8_A RAS-related protein RAB 94.5 0.016 5.6E-07 53.7 2.9 23 388-410 25-47 (191)
421 3a1s_A Iron(II) transport prot 94.5 0.018 6.3E-07 56.9 3.4 23 388-410 7-29 (258)
422 3exa_A TRNA delta(2)-isopenten 94.5 0.02 6.9E-07 58.1 3.7 25 386-410 3-27 (322)
423 2a5j_A RAS-related protein RAB 94.5 0.018 6.2E-07 53.5 3.1 22 388-409 23-44 (191)
424 3umf_A Adenylate kinase; rossm 94.5 0.016 5.4E-07 55.9 2.7 29 382-410 25-53 (217)
425 3bwd_D RAC-like GTP-binding pr 94.5 0.021 7.2E-07 52.1 3.5 25 385-409 7-31 (182)
426 3d3q_A TRNA delta(2)-isopenten 94.5 0.018 6.2E-07 59.2 3.3 25 387-411 8-32 (340)
427 1zj6_A ADP-ribosylation factor 94.4 0.019 6.5E-07 53.0 3.1 24 385-408 15-38 (187)
428 2o52_A RAS-related protein RAB 94.4 0.019 6.4E-07 53.9 3.1 22 388-409 27-48 (200)
429 3reg_A RHO-like small GTPase; 94.4 0.019 6.6E-07 53.3 3.1 22 388-409 25-46 (194)
430 1zd9_A ADP-ribosylation factor 94.4 0.02 6.7E-07 53.1 3.1 22 388-409 24-45 (188)
431 2h57_A ADP-ribosylation factor 94.4 0.016 5.3E-07 53.8 2.4 24 387-410 22-45 (190)
432 3tqf_A HPR(Ser) kinase; transf 94.4 0.019 6.5E-07 53.1 2.8 25 384-408 14-38 (181)
433 2atv_A RERG, RAS-like estrogen 94.4 0.02 6.9E-07 53.4 3.2 23 387-409 29-51 (196)
434 3cnl_A YLQF, putative uncharac 94.4 0.022 7.4E-07 56.6 3.5 30 387-416 100-129 (262)
435 2h17_A ADP-ribosylation factor 94.4 0.017 6E-07 53.1 2.6 22 388-409 23-44 (181)
436 2p5s_A RAS and EF-hand domain 94.4 0.02 6.9E-07 53.6 3.1 24 386-409 28-51 (199)
437 1x3s_A RAS-related protein RAB 94.4 0.02 7E-07 52.9 3.1 23 387-409 16-38 (195)
438 3cph_A RAS-related protein SEC 94.4 0.02 6.9E-07 53.9 3.1 24 386-409 20-43 (213)
439 2bcg_Y Protein YP2, GTP-bindin 94.4 0.019 6.4E-07 54.0 2.9 22 388-409 10-31 (206)
440 2fv8_A H6, RHO-related GTP-bin 94.4 0.019 6.5E-07 54.2 2.9 24 386-409 25-48 (207)
441 4edh_A DTMP kinase, thymidylat 94.3 0.022 7.7E-07 54.6 3.4 29 384-412 4-32 (213)
442 2wsm_A Hydrogenase expression/ 94.3 0.019 6.6E-07 54.6 2.9 24 387-410 31-54 (221)
443 3llu_A RAS-related GTP-binding 94.3 0.021 7.2E-07 53.4 3.1 25 387-411 21-45 (196)
444 2iwr_A Centaurin gamma 1; ANK 94.3 0.016 5.5E-07 52.9 2.3 22 388-409 9-30 (178)
445 3c5c_A RAS-like protein 12; GD 94.3 0.022 7.7E-07 52.8 3.2 22 388-409 23-44 (187)
446 2f7s_A C25KG, RAS-related prot 94.3 0.024 8E-07 53.8 3.4 23 388-410 27-49 (217)
447 2q3h_A RAS homolog gene family 94.2 0.024 8.1E-07 53.0 3.3 24 386-409 20-43 (201)
448 2j1l_A RHO-related GTP-binding 94.2 0.022 7.6E-07 54.1 3.2 21 388-408 36-56 (214)
449 3def_A T7I23.11 protein; chlor 94.2 0.022 7.4E-07 56.4 3.1 23 388-410 38-60 (262)
450 3lv8_A DTMP kinase, thymidylat 94.2 0.024 8.3E-07 55.3 3.4 27 385-411 26-52 (236)
451 1jwy_B Dynamin A GTPase domain 94.2 0.021 7.2E-07 57.8 3.1 23 388-410 26-48 (315)
452 1h65_A Chloroplast outer envel 94.2 0.022 7.5E-07 56.5 3.1 23 388-410 41-63 (270)
453 1sxj_B Activator 1 37 kDa subu 94.2 0.051 1.7E-06 54.7 5.9 42 519-561 107-148 (323)
454 2fu5_C RAS-related protein RAB 94.2 0.016 5.5E-07 53.2 1.9 22 388-409 10-31 (183)
455 2fh5_B SR-beta, signal recogni 94.1 0.032 1.1E-06 52.7 4.0 24 387-410 8-31 (214)
456 1ltq_A Polynucleotide kinase; 94.1 0.024 8.3E-07 56.9 3.3 22 387-408 3-24 (301)
457 2gco_A H9, RHO-related GTP-bin 94.1 0.023 7.9E-07 53.3 2.9 22 388-409 27-48 (201)
458 2b6h_A ADP-ribosylation factor 94.1 0.023 7.8E-07 53.0 2.8 25 384-408 27-51 (192)
459 2aka_B Dynamin-1; fusion prote 94.1 0.022 7.5E-07 57.1 2.9 24 387-410 27-50 (299)
460 4tmk_A Protein (thymidylate ki 94.1 0.028 9.6E-07 54.0 3.5 27 385-411 2-28 (213)
461 3ld9_A DTMP kinase, thymidylat 94.0 0.028 9.7E-07 54.3 3.4 28 384-411 19-46 (223)
462 2ocp_A DGK, deoxyguanosine kin 94.0 0.026 9E-07 54.9 3.2 27 385-411 1-27 (241)
463 2g3y_A GTP-binding protein GEM 94.0 0.028 9.7E-07 53.7 3.4 22 388-409 39-60 (211)
464 3crm_A TRNA delta(2)-isopenten 94.0 0.025 8.7E-07 57.8 3.2 25 387-411 6-30 (323)
465 3tmk_A Thymidylate kinase; pho 94.0 0.03 1E-06 53.9 3.4 29 384-412 3-31 (216)
466 2p65_A Hypothetical protein PF 93.9 0.023 8E-07 51.9 2.6 29 384-412 41-69 (187)
467 2atx_A Small GTP binding prote 93.9 0.027 9.2E-07 52.3 2.9 22 388-409 20-41 (194)
468 1p5z_B DCK, deoxycytidine kina 93.8 0.02 7E-07 56.5 2.0 28 384-411 22-49 (263)
469 3r7w_A Gtpase1, GTP-binding pr 93.8 0.031 1.1E-06 56.7 3.4 26 385-410 2-27 (307)
470 3foz_A TRNA delta(2)-isopenten 93.8 0.032 1.1E-06 56.5 3.5 25 386-410 10-34 (316)
471 1qvr_A CLPB protein; coiled co 93.8 0.057 1.9E-06 62.8 5.9 35 387-421 589-624 (854)
472 1q57_A DNA primase/helicase; d 93.8 0.54 1.9E-05 50.9 13.5 35 375-409 231-265 (503)
473 2hf9_A Probable hydrogenase ni 93.7 0.029 9.9E-07 53.6 2.9 24 387-410 39-62 (226)
474 2r62_A Cell division protease 93.7 0.012 3.9E-07 58.2 -0.1 31 377-409 37-67 (268)
475 4djt_A GTP-binding nuclear pro 93.7 0.016 5.4E-07 55.1 0.9 22 388-409 13-34 (218)
476 2x77_A ADP-ribosylation factor 93.6 0.023 7.7E-07 52.6 1.8 24 385-408 21-44 (189)
477 2hup_A RAS-related protein RAB 93.6 0.032 1.1E-06 52.4 2.9 22 388-409 31-52 (201)
478 2zts_A Putative uncharacterize 93.6 0.046 1.6E-06 52.8 4.1 25 382-406 26-50 (251)
479 3l0o_A Transcription terminati 93.6 0.014 4.9E-07 60.8 0.4 33 378-410 167-199 (427)
480 4gzl_A RAS-related C3 botulinu 93.6 0.033 1.1E-06 52.5 2.9 23 386-408 30-52 (204)
481 2i1q_A DNA repair and recombin 93.5 0.039 1.3E-06 56.2 3.6 35 374-408 85-120 (322)
482 3cpj_B GTP-binding protein YPT 93.5 0.038 1.3E-06 52.8 3.2 22 388-409 15-36 (223)
483 3cmw_A Protein RECA, recombina 93.4 0.22 7.6E-06 61.3 10.5 37 373-409 368-406 (1706)
484 2yc2_C IFT27, small RAB-relate 93.4 0.018 6.1E-07 53.9 0.8 23 387-409 21-43 (208)
485 3q3j_B RHO-related GTP-binding 93.4 0.038 1.3E-06 52.5 3.1 23 387-409 28-50 (214)
486 3euj_A Chromosome partition pr 93.4 0.1 3.5E-06 56.3 6.7 77 493-573 371-464 (483)
487 2v3c_C SRP54, signal recogniti 93.4 0.013 4.4E-07 62.6 -0.4 36 386-421 99-134 (432)
488 1puj_A YLQF, conserved hypothe 93.2 0.052 1.8E-06 54.4 3.8 27 386-412 120-146 (282)
489 3sr0_A Adenylate kinase; phosp 93.2 0.047 1.6E-06 52.0 3.3 23 388-410 2-24 (206)
490 2j0v_A RAC-like GTP-binding pr 93.1 0.042 1.4E-06 51.8 2.9 23 387-409 10-32 (212)
491 3eph_A TRNA isopentenyltransfe 93.1 0.044 1.5E-06 57.6 3.2 24 387-410 3-26 (409)
492 1a5t_A Delta prime, HOLB; zinc 93.0 0.24 8.3E-06 50.6 8.7 42 519-561 108-149 (334)
493 3ec1_A YQEH GTPase; atnos1, at 93.0 0.044 1.5E-06 57.2 3.1 25 385-409 161-185 (369)
494 1tue_A Replication protein E1; 92.8 0.036 1.2E-06 52.8 1.9 28 383-410 55-82 (212)
495 1lnz_A SPO0B-associated GTP-bi 92.6 0.071 2.4E-06 55.0 4.0 32 378-409 150-181 (342)
496 3h2y_A GTPase family protein; 92.6 0.047 1.6E-06 56.9 2.6 26 385-410 159-184 (368)
497 2hjg_A GTP-binding protein ENG 92.3 0.058 2E-06 57.5 2.9 22 388-409 5-26 (436)
498 1wxq_A GTP-binding protein; st 92.3 0.063 2.2E-06 56.6 3.2 23 388-410 2-24 (397)
499 1mky_A Probable GTP-binding pr 92.3 0.1 3.4E-06 55.7 4.8 36 388-423 3-50 (439)
500 1g8f_A Sulfate adenylyltransfe 92.3 0.059 2E-06 58.6 3.0 29 384-412 393-421 (511)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=7e-95 Score=878.00 Aligned_cols=571 Identities=26% Similarity=0.313 Sum_probs=498.5
Q ss_pred HHHHHHHhhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC------c-----------hhhhhhHHHHHHH
Q psy13349 25 ISFILKCIYG-VRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKP------S-----------LLWKNYSSYILLL 86 (604)
Q Consensus 25 ~~~l~~~~~~-~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~------~-----------~~~~~~~~~l~~~ 86 (604)
.+.+++|..+ .+..+++++++++++++..++.++++|.++|.+..... . .........+.+.
T Consensus 62 ~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 141 (1321)
T 4f4c_A 62 IPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVMNVVWS 141 (1321)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHHHHHHH
T ss_pred HHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHH
Confidence 4445566544 45566677777888888888888899999987642100 0 0000011111122
Q ss_pred HHHHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q psy13349 87 GFILISS-TVFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFI 165 (604)
Q Consensus 87 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~ 165 (604)
++++.+. .++.++..++. ..+++++..++|.++|+|++++|++||+++++|++++|+++|++.+++++...+..++..
T Consensus 142 ~~~l~i~~~~~~~~~~~~~-~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~~~G~l~sr~~~D~~~i~~~~~~~l~~~~~~ 220 (1321)
T 4f4c_A 142 YAAMTVGMWAAGQITVTCY-LYVAEQMNNRLRREFVKSILRQEISWFDTNHSGTLATKLFDNLERVKEGTGDKIGMAFQY 220 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSCHHHHHHTCCTTHHHHHHHHHHHHHHTSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHCCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222222 55666666543 467889999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHH
Q psy13349 166 TIYIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANY 245 (604)
Q Consensus 166 ~~~~i~~~~~l~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~ 245 (604)
++.+++.++++++++|.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++
T Consensus 221 ~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~ 300 (1321)
T 4f4c_A 221 LSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLRYELER 300 (1321)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccHHHHHH
Confidence 88888889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 246 ARFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALF 325 (604)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~ 325 (604)
+.+..++..+...+..........+..++..+..++++++|++++.+|.+++|.+++++.++..+..++..+...+..+.
T Consensus 301 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 380 (1321)
T 4f4c_A 301 YSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQLAVLG 380 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999888888888888888888888888888889999999999999999999999999888888877777777777
Q ss_pred HHHHHHHHHHHhhccccccccCccc-ccccccCceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHH
Q psy13349 326 ESIGTIQDGMNMLSKKYKIVDNYNA-KRLVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTI 402 (604)
Q Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl 402 (604)
.+...+++..+.++++++..+.... ....+..++|+|+||+|+||+ +.++|+|+||+|++||++|||||||||||||
T Consensus 381 ~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTl 460 (1321)
T 4f4c_A 381 TAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTI 460 (1321)
T ss_dssp HHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHH
T ss_pred HHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHH
Confidence 7888888888888776654332221 112234578999999999985 4689999999999999999999999999999
Q ss_pred HHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHh
Q psy13349 403 NNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSL 482 (604)
Q Consensus 403 ~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~l 482 (604)
+++|+|+|+|++|+|.+||+|+++++.+++|++|+||||+|+||++||||||++|+|+++++++++||+.+++++||++|
T Consensus 461 l~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~~i~~l 540 (1321)
T 4f4c_A 461 ISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEKFIKTL 540 (1321)
T ss_dssp HHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHHS
T ss_pred HHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchhHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhH
Q psy13349 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLST 562 (604)
Q Consensus 483 p~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~ 562 (604)
|+ |+||.|||+|.+||||||||||||||+++||+|||||||||+||+++|+.++++|++..+++|+|+||||+++
T Consensus 541 p~-----G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 541 PN-----GYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp TT-----TTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred CC-----CCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 99 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHHHhh
Q psy13349 563 ISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 563 ~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~~q~ 601 (604)
++.||+|+||++|+|+|+|+|+||++++|.|+++|+.|.
T Consensus 616 i~~aD~Iivl~~G~ive~Gth~eL~~~~g~y~~l~~~q~ 654 (1321)
T 4f4c_A 616 IRNADLIISCKNGQVVEVGDHRALMAQQGLYYDLVTAQT 654 (1321)
T ss_dssp TTTCSEEEEEETTEEEEEECHHHHHTTTCHHHHHHHHHH
T ss_pred HHhCCEEEEeeCCeeeccCCHHHHHHhhhHHHHHHHhhh
Confidence 999999999999999999999999999999999998874
No 2
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=2.3e-93 Score=804.22 Aligned_cols=570 Identities=28% Similarity=0.400 Sum_probs=504.1
Q ss_pred chHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHH
Q psy13349 22 YKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQ 100 (604)
Q Consensus 22 ~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~ 100 (604)
+..+++++++.+++++.++.+++++++++++.++.|++++.++|.+....+... ....+.+++++.++ .++.++.
T Consensus 22 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~ 97 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDL----LPRYMLILGTIYALTSLLFWLQ 97 (598)
T ss_dssp HHHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCGGG----HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH----HHHHHHHHHHHHHHHHHHHHHH
Confidence 345667778899999999999999999999999999999999998764332211 11111222222222 5566666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 101 TLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFN 180 (604)
Q Consensus 101 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 180 (604)
.++.+ ..+.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++...+..++..++.+++.++++++++
T Consensus 98 ~~~~~-~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 176 (598)
T 3qf4_B 98 GKIML-TLSQDVVFRLRKELFEKLQRVPVGFFDRTPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVN 176 (598)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHSCTHHHHHSCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 65543 45778999999999999999999999999999999999999999999998888877888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q psy13349 181 VYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQ 260 (604)
Q Consensus 181 ~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 260 (604)
|.+++++++.+|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.+++.+..++..+...+.
T Consensus 177 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 256 (598)
T 3qf4_B 177 VILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKA 256 (598)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy13349 261 MRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSK 340 (604)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 340 (604)
.+.......+..++..+..++++++|++++..|.+++|.++++..+...+..++..+...+..+..+...+++..+.++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 336 (598)
T 3qf4_B 257 QIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDL 336 (598)
T ss_dssp HHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888889999999999999999999999988888788777777777777777777777777766
Q ss_pred ccccccCcccccccccCceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC
Q psy13349 341 KYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420 (604)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~ 420 (604)
+++..+. ...+.++..+.|+++||+|+|++++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+|
T Consensus 337 ~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 415 (598)
T 3qf4_B 337 EEEKDDP-DAVELREVRGEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVD 415 (598)
T ss_dssp CCCCCCS-SCCCCCSCCCCEEEEEEECCSSSSSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEET
T ss_pred CCCCCCC-CCCCCCCCCCeEEEEEEEEECCCCCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEEC
Confidence 5443211 111122334679999999999876789999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 421 GQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 421 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
|+|+++++.+++|++++||||+|++|++|++|||.+|+++.+++++.++++.++++++++++|+ |+||.+||+|.
T Consensus 416 g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----g~~t~~~~~g~ 490 (598)
T 3qf4_B 416 GIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPE-----GYETVLTDNGE 490 (598)
T ss_dssp TEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTT-----GGGCBCHHHHT
T ss_pred CEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccc-----cccchhcCCCC
Confidence 9999999999999999999999999999999999999988899999999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
+||||||||++|||||+++|++||||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|+++++
T Consensus 491 ~LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~ 570 (598)
T 3qf4_B 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEM 570 (598)
T ss_dssp TSCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEEC
T ss_pred CCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cChhHHhhcCcHHHHHHHHhhc
Q psy13349 581 GSHLDLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 581 g~~~~l~~~~~~y~~l~~~q~~ 602 (604)
|+|+|++++++.|+++|+.|.+
T Consensus 571 g~~~~l~~~~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 571 GKHDELIQKRGFYYELFTSQYG 592 (598)
T ss_dssp SCHHHHHHTTCHHHHHHHHHHG
T ss_pred CCHHHHHhCCCHHHHHHHHHhh
Confidence 9999999999999999998764
No 3
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=8.6e-93 Score=797.41 Aligned_cols=566 Identities=23% Similarity=0.319 Sum_probs=495.0
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy13349 27 FILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKH 105 (604)
Q Consensus 27 ~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 105 (604)
.++++.+++++.++.+++++++.+++.++.|+++++++|.+....+... ...+..+++++.++ .++.++..++.
T Consensus 13 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~- 87 (587)
T 3qf4_A 13 TLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDFSL----VLKTGILMLIVALIGAVGGIGCTVFA- 87 (587)
T ss_dssp CGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-
Confidence 3566889999999999999999999999999999999998754332111 11111112222222 44555555543
Q ss_pred HHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 106 QVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLF 185 (604)
Q Consensus 106 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 185 (604)
...+.++..++|.++|+|++++|+.+|++.++|++++|+++|++.+++++...+..++..++.+++.+++++.++|.+++
T Consensus 88 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~l 167 (587)
T 3qf4_A 88 SYASQNFGADLRRDLFRKVLSFSISNVNRFHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSS 167 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTTTTH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35577889999999999999999999999999999999999999999999888877777777777788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 186 PFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLIS 265 (604)
Q Consensus 186 v~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (604)
++++.+|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.+++.+..+++.+...+..+...
T Consensus 168 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (587)
T 3qf4_A 168 VLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIV 247 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988888888877
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Q psy13349 266 SFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIV 345 (604)
Q Consensus 266 ~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 345 (604)
....+..++..+..++++++|++++..|.+++|.++++..+...+..++..+...+..+.+.....++..+.++.+++..
T Consensus 248 ~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~~ 327 (587)
T 3qf4_A 248 FALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKPAIE 327 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccC
Confidence 77777777888888888999999999999999999999999988887777666666666666677777777776554432
Q ss_pred cCcccccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC
Q psy13349 346 DNYNAKRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424 (604)
Q Consensus 346 ~~~~~~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~ 424 (604)
+.......++..+.|+++||+|+|++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.+||+|+
T Consensus 328 ~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i 407 (587)
T 3qf4_A 328 EADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDV 407 (587)
T ss_dssp CCTTCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBG
T ss_pred CCCCccccCCCCCcEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEc
Confidence 22211112233467999999999975 46799999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 425 SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 425 ~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
++++.+++|++|+||||+|++|++|++|||.+|.++.+++++.++++.+++++++.++|+ |+||.+||+|.+|||
T Consensus 408 ~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~-----g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 408 RTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPE-----GYDSRVERGGRNFSG 482 (587)
T ss_dssp GGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSS-----GGGCEECSSSCSSCH
T ss_pred ccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhccc-----chhhHhcCCCCCcCH
Confidence 999999999999999999999999999999999988999999999999999999999999 999999999999999
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChh
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~ 584 (604)
|||||++|||||+++|+++|||||||+||+++++.+++.+++..+++|+|+||||+++++.||||++|++|+|+++|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred HHhhcCcHHHHHHHHhhc
Q psy13349 585 DLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 585 ~l~~~~~~y~~l~~~q~~ 602 (604)
|+++.++.|+++|+.|.+
T Consensus 563 el~~~~~~~~~~~~~~~~ 580 (587)
T 3qf4_A 563 ELLEHCKPYREIYESQFG 580 (587)
T ss_dssp HHHHHCHHHHHHHHHHC-
T ss_pred HHHhCCcHHHHHHHHHhc
Confidence 999999999999988754
No 4
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=100.00 E-value=4.1e-93 Score=799.58 Aligned_cols=571 Identities=30% Similarity=0.448 Sum_probs=501.0
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhh---HHHHHHHHHHHHHH-HHHHHHH
Q psy13349 25 ISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNY---SSYILLLGFILISS-TVFVGLQ 100 (604)
Q Consensus 25 ~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~---~~~l~~~~~~~~~~-~~~~~~~ 100 (604)
.++++++.+++++.++.+++++++.+++.++.|+++++++|.+............ ...+..+++++.++ .++.++.
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567788999999999999999999999999999999999988654321100000 01111111222222 5556666
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 101 TLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFN 180 (604)
Q Consensus 101 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 180 (604)
.++.+ ..+.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++...+..++..++.+++.+++++.++
T Consensus 82 ~~~~~-~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 160 (578)
T 4a82_A 82 QYLAQ-WTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLD 160 (578)
T ss_dssp HHHHH-HHHHHHHHHHHHHHHHHHHHSCHHHHHTSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHCCCHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 65543 56778999999999999999999999999999999999999999999988766666667777777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Q psy13349 181 VYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQ 260 (604)
Q Consensus 181 ~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 260 (604)
|.+++++++.+|+++++..++.++.++..++..+..+++.+.+.|.++|+++||+|+.|+.+.+++.+..++..+...+.
T Consensus 161 ~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 240 (578)
T 4a82_A 161 VKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKH 240 (578)
T ss_dssp TTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q psy13349 261 MRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSK 340 (604)
Q Consensus 261 ~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 340 (604)
.+.......+..++..+..++++++|++++..|.+++|.++++..++..+..++..+...+..+..+...+++..+.++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~ 320 (578)
T 4a82_A 241 TRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLIDE 320 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888888889999999999999999999999999888888877777777777777778888777776
Q ss_pred ccccccCcccccccccCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q psy13349 341 KYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419 (604)
Q Consensus 341 ~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i 419 (604)
+++..+.....+.++..+.++++||+|+|++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+
T Consensus 321 ~~~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 400 (578)
T 4a82_A 321 DYDIKNGVGAQPIEIKQGRIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILI 400 (578)
T ss_dssp CCSSCCCTTCCCCCCCSCCEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEE
T ss_pred CCcccCCCCccccCCCCCeEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEE
Confidence 5543222221112223467999999999986 457999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 420 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
||+|+++++.+++|++++||||+|++|++|++|||.+|.|+.+++++.++++.+++++++.++|+ |+||.+||+|
T Consensus 401 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~-----g~~t~~~~~g 475 (578)
T 4a82_A 401 DGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQ-----GYDTEVGERG 475 (578)
T ss_dssp TTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTT-----GGGCBCCGGG
T ss_pred CCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcc-----hhhhhhccCC
Confidence 99999999999999999999999999999999999999998999999999999999999999999 9999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~ 579 (604)
.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||||++|++|++++
T Consensus 476 ~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~ 555 (578)
T 4a82_A 476 VKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVE 555 (578)
T ss_dssp TTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEE
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998888999999999999999999999999999999
Q ss_pred ecChhHHhhcCcHHHHHHHHhh
Q psy13349 580 EGSHLDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 580 ~g~~~~l~~~~~~y~~l~~~q~ 601 (604)
+|+|+|+++.++.|+++|+.|.
T Consensus 556 ~g~~~el~~~~~~~~~~~~~q~ 577 (578)
T 4a82_A 556 TGTHRELIAKQGAYEHLYSIQN 577 (578)
T ss_dssp EECHHHHHHTTSHHHHHHTTTT
T ss_pred ECCHHHHHhCCcHHHHHHHhhc
Confidence 9999999999999999998774
No 5
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=100.00 E-value=1.1e-90 Score=780.88 Aligned_cols=567 Identities=25% Similarity=0.344 Sum_probs=500.3
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTL 102 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 102 (604)
..++++++.+++++.++.+++++++++++.++.|+++++++|.+........ ..++...++++.++ .++.++..+
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b5x_A 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNF----LRILPFMILGLMFVRGLSGFASSY 87 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999999999999999998764322111 11111112222222 555666665
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 103 FKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 103 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
+.+ ..+.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++...+..++..++.+++.++++++++|.
T Consensus 88 ~~~-~~~~~~~~~lr~~l~~~ll~~~~~~~~~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b5x_A 88 CLS-WVSGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQ 166 (582)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcCCHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 443 4567899999999999999999999999999999999999999999998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
+++++++.+|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|+.|+.+.+++.+..+++.+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b5x_A 167 LSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKY 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (604)
...+...+..++..+..++++++|++++.+|.+++|.++++..++..+..++..+...+..+......+++..+.++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b5x_A 247 AQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLET 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888999999999999999999999999999988888877777777777777777777776544
Q ss_pred ccccCcccccccccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 343 KIVDNYNAKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
+..+ ...+.++..+.++++||+|+|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 327 ~~~~--~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g 404 (582)
T 3b5x_A 327 ERDN--GKYEAERVNGEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDG 404 (582)
T ss_pred cCCC--CCCCCCCCCCeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECC
Confidence 3211 111112224679999999999753 6799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCC-CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGR-PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 422 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~-~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
+|+.+++.+++|++++||||+|.+|++|++|||.+|. ++.+++++.++++.++++++++++|+ |+||.+|++|.
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~-----g~~t~~~~~~~ 479 (582)
T 3b5x_A 405 HDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ-----GLDTVIGENGT 479 (582)
T ss_pred EEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcc-----cccchhcCCCC
Confidence 9999999999999999999999999999999999997 77889999999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||+|++|++|++++.
T Consensus 480 ~LSgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b5x_A 480 SLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIER 559 (582)
T ss_pred cCCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEE
Confidence 99999999999999999999999999999999999999999999988789999999999999999999999999999999
Q ss_pred cChhHHhhcCcHHHHHHHHhhc
Q psy13349 581 GSHLDLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 581 g~~~~l~~~~~~y~~l~~~q~~ 602 (604)
|+|+|+++.++.|+++|+.|..
T Consensus 560 g~~~~l~~~~~~~~~~~~~q~~ 581 (582)
T 3b5x_A 560 GRHADLLAQDGAYAQLHRIQFG 581 (582)
T ss_pred CCHHHHHhCCcHHHHHHHHhhc
Confidence 9999999999999999998853
No 6
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=100.00 E-value=2.1e-93 Score=865.13 Aligned_cols=568 Identities=26% Similarity=0.327 Sum_probs=463.2
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHH
Q psy13349 27 FILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKH 105 (604)
Q Consensus 27 ~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~ 105 (604)
+++.+.+++++.++++++++++.+.+.+..+++++..++.....+... ......+.+ +.+++.+. .++.++..++.
T Consensus 742 ~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~l~~~~~i~~~~~~~~~- 818 (1321)
T 4f4c_A 742 EILYHARPHALSLFIGMSTATIGGFIYPTYSVFFTSFMNVFAGNPADF-LSQGHFWAL-MFLVLAAAQGICSFLMTFFM- 818 (1321)
T ss_dssp HHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHHHHHHHHHTSSCSSTT-TTTHHHHHH-HHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhh-hhHHHHHHH-HHHHHHHHHHHHHHHHHHHH-
Confidence 345667889999999999999999888999999999998765433221 111111111 12222222 55556666544
Q ss_pred HHHHhhHHHHHHHHHHHHHHcCCcccccc--cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 106 QVLSGNFPMLLRWNFHRLILNQSINFFQE--EFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYM 183 (604)
Q Consensus 106 ~~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 183 (604)
...+.++..++|.++|++++++|++||+. +++|++++|+++|++.+++.+...+..++..++.+++.++++++++|.+
T Consensus 819 ~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l 898 (1321)
T 4f4c_A 819 GIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQM 898 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHHHHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHH
Confidence 35677889999999999999999999986 6799999999999999999988888888888888888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 184 LFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRL 263 (604)
Q Consensus 184 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 263 (604)
++++++.+|++++...++.++..+...+..+..++....+.|+++|+++||+|+.|+.+.+++.+..++..+...+....
T Consensus 899 ~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1321)
T 4f4c_A 899 ALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADSGKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFI 978 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHHHHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888777777666666666777888889999999999999999999999999999888888888887777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Q psy13349 264 ISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATA--MSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKK 341 (604)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~--~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 341 (604)
..+...+...+..+...+++++|++++..+..+.|....+.. +......++..+......+.......++..+.++.+
T Consensus 979 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~ 1058 (1321)
T 4f4c_A 979 QGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKI 1058 (1321)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCc
Confidence 777777777777777777888899998888877665544322 222212222333333444455555666666666666
Q ss_pred cccccCcccccccccCceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q psy13349 342 YKIVDNYNAKRLVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419 (604)
Q Consensus 342 ~~~~~~~~~~~~~~~~~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i 419 (604)
++..+...+.+.++..+.|+|+||+|+||+ +.+||+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+
T Consensus 1059 ~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~i 1138 (1321)
T 4f4c_A 1059 SKIDSLSLAGEKKKLYGKVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFI 1138 (1321)
T ss_dssp CSSCTTCCCSBCCCCCCCEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEE
T ss_pred ccCCCccCCCCCCCCCCeEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEE
Confidence 554333222233445678999999999975 347999999999999999999999999999999999999999999999
Q ss_pred CCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCC--CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccccc
Q psy13349 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGR--PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGE 497 (604)
Q Consensus 420 ~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~--~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e 497 (604)
||+|+++++.+++|++|++|||||+||+|||||||++|. ++++|+|+++|++.+++++||.+||+ ||||.|||
T Consensus 1139 DG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~-----GldT~vge 1213 (1321)
T 4f4c_A 1139 DGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENIIYGLDPSSVTMAQVEEAARLANIHNFIAELPE-----GFETRVGD 1213 (1321)
T ss_dssp TTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHHSSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTT-----TTCSEETT
T ss_pred CCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHHhccCCCCCCCHHHHHHHHHHhCChHHHHcCcC-----CCCCEecC
Confidence 999999999999999999999999999999999999994 46899999999999999999999999 99999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEE
Q psy13349 498 HGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCV 577 (604)
Q Consensus 498 ~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i 577 (604)
+|.+|||||||||||||||++||+|||||||||+||++||+.|+++|++..++||+|+||||++++++||||+|||+|+|
T Consensus 1214 ~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~I 1293 (1321)
T 4f4c_A 1214 RGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTI 1293 (1321)
T ss_dssp TSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSE
T ss_pred CCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999998899999999999999999999999999999
Q ss_pred eEecChhHHhhcCcHHHHHHHHhhc
Q psy13349 578 AEEGSHLDLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 578 v~~g~~~~l~~~~~~y~~l~~~q~~ 602 (604)
+|+|+|+||++++|.|++||+.|..
T Consensus 1294 vE~Gth~eLl~~~g~y~~L~~~Q~~ 1318 (1321)
T 4f4c_A 1294 IEKGTHTQLMSEKGAYYKLTQKQMT 1318 (1321)
T ss_dssp EEEECHHHHHHCC------------
T ss_pred EEECCHHHHHhCCcHHHHHHHHHHh
Confidence 9999999999999999999998864
No 7
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=100.00 E-value=1.4e-90 Score=780.05 Aligned_cols=567 Identities=25% Similarity=0.355 Sum_probs=499.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTL 102 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~ 102 (604)
..++++++.+++++.++.+++++++.+++.++.|+++++++|.+........ ...+...++++.++ .++.++..+
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 87 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSV----LLWMPLVVIGLMILRGITSYISSY 87 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTHHH----HHHSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchHH----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778889999999999999999999999999999999997653222111 11111111222222 555666665
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 103 FKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVY 182 (604)
Q Consensus 103 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 182 (604)
+.+ ..+.++..++|.++|+|++++|+.||++.++|++++|+++|++.+++++...+..++..++.+++.++++++++|.
T Consensus 88 ~~~-~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 88 CIS-WVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHH-HHHHHHHHHHHHHHHHHHHTCCSTHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHH-HHHHHHHHHHHHHHHHHHHcCCHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 543 4567899999999999999999999999999999999999999999998888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 183 MLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMR 262 (604)
Q Consensus 183 l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 262 (604)
+++++++.+|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|+.|+.+.+++.+..+++.+...+..+
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc
Q psy13349 263 LISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKY 342 (604)
Q Consensus 263 ~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 342 (604)
...+...+..++..+..++++++|++++..|.+++|.++++..++..+..++..+...+..+......+++..+.++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888888899999999999999999999999999988888877777777777777777777776544
Q ss_pred ccccCcccccccccCceEEEEEEEEEeCCC-CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 343 KIVDNYNAKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 343 ~~~~~~~~~~~~~~~~~i~~~~vsf~y~~~-~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
+..+ +..+.++..+.|+++||+|+|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+||
T Consensus 327 ~~~~--~~~~~~~~~~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g 404 (582)
T 3b60_A 327 EKDE--GKRVIDRATGDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDG 404 (582)
T ss_dssp SCCC--CCBCCSCCCCCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETT
T ss_pred CccC--CCCCCCCCCCcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECC
Confidence 3221 111112224579999999999753 6799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCC-CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC
Q psy13349 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGR-PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI 500 (604)
Q Consensus 422 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~-~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~ 500 (604)
+|+++++.+++|++++||||+|.+|++|++||+.++. ++.+++++.++++.++++++++++|+ |+||.+||+|.
T Consensus 405 ~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~-----g~~~~~~~~~~ 479 (582)
T 3b60_A 405 HDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN-----GLDTIIGENGV 479 (582)
T ss_dssp EETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTT-----GGGSBCCTTSC
T ss_pred EEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccc-----cccccccCCCC
Confidence 9999999999999999999999999999999999997 67889999999999999999999999 99999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||||++|++|++++.
T Consensus 480 ~LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~ 559 (582)
T 3b60_A 480 LLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVER 559 (582)
T ss_dssp SSCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999988889999999999999999999999999999999
Q ss_pred cChhHHhhcCcHHHHHHHHhhc
Q psy13349 581 GSHLDLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 581 g~~~~l~~~~~~y~~l~~~q~~ 602 (604)
|+|+|+++.++.|+++|+.|..
T Consensus 560 g~~~~l~~~~~~~~~~~~~q~~ 581 (582)
T 3b60_A 560 GTHSELLAQHGVYAQLHKMQFG 581 (582)
T ss_dssp ECHHHHHHHTSSHHHHHHHTCC
T ss_pred cCHHHHHHcCCHHHHHHHHhcc
Confidence 9999999999999999998853
No 8
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=100.00 E-value=6.8e-90 Score=776.29 Aligned_cols=571 Identities=27% Similarity=0.327 Sum_probs=481.9
Q ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHH
Q psy13349 25 ISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLF 103 (604)
Q Consensus 25 ~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~ 103 (604)
.++++++.+++++.++.+++++++++++.++.|+++++++|.+......... .....+...++++.++ .++.++..++
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (595)
T 2yl4_A 7 ARKLLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYS-DNLTRLCLGLSAVFLCGAAANAIRVYL 85 (595)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCTTSCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhh-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4556678899999999999999999999999999999999987543211100 0011111111222222 4455555554
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 104 KHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYM 183 (604)
Q Consensus 104 ~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 183 (604)
. ...+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+..++..++.+++.++++++++|.+
T Consensus 86 ~-~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 164 (595)
T 2yl4_A 86 M-QTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSVTENLSDGLRAGAQASVGISMMFFVSPNL 164 (595)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHSCHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHCHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHcCCHHHHCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 4 345678999999999999999999999999999999999999999999988888777778888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 184 LFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRL 263 (604)
Q Consensus 184 ~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 263 (604)
++++++.+|+.+++..++.++.++..++.++..+++.+.+.|.++|+++||+||.|+.+.+++.+..+++.+...+..+.
T Consensus 165 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 244 (595)
T 2yl4_A 165 ATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGNVRTVRAFGKEMTEIEKYASKVDHVMQLARKEAFA 244 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc
Q psy13349 264 ISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYK 343 (604)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 343 (604)
..+...+..++..+..++++++|++++.+|.+++|.++++..++..+..++..+...+..+..+...+++..+.++.+++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~ 324 (595)
T 2yl4_A 245 RAGFFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGGRLWELLEREPK 324 (595)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888888888999999999999999999999999988888887777777777777777777777765543
Q ss_pred cccCcccccccccCce-EEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEEC
Q psy13349 344 IVDNYNAKRLVVTNGK-IFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420 (604)
Q Consensus 344 ~~~~~~~~~~~~~~~~-i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~ 420 (604)
..+..+..+..+..+. |+++||+|+|+++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.+|
T Consensus 325 ~~~~~~~~~~~~~~~~~i~~~~v~~~y~~~~~~~vl~~isl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~ 404 (595)
T 2yl4_A 325 LPFNEGVILNEKSFQGALEFKNVHFAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLD 404 (595)
T ss_dssp SCSSCSBCCCTTTCCCCEEEEEEEEECSSCTTSEEEEEEEEEECTTCEEEEECCTTSSSTHHHHHHTTSSCCSEEEEEET
T ss_pred cCCCCCCCCCcCCCCCeEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEEC
Confidence 3221111111122456 9999999999753 479999999999999999999999999999999999999999999999
Q ss_pred CEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCC---CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccccc
Q psy13349 421 GQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD---ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGE 497 (604)
Q Consensus 421 g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~---~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e 497 (604)
|+|+++++.+++|++++||||+|.+|++|++|||.+|.+. .+++++.++++.++++++++++|+ |+||.+||
T Consensus 405 g~~i~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~-----g~~~~~~~ 479 (595)
T 2yl4_A 405 GHDIRQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRNFPQ-----GFNTVVGE 479 (595)
T ss_dssp TEETTTBCHHHHHHSEEEECSSCCCCSSBHHHHHHTTSSSTTTSCHHHHHHHHHHTTCHHHHHTSSS-----GGGCBCSS
T ss_pred CEEhhhCCHHHHHhceEEEccCCcccCCCHHHHHhhcCCCccccCHHHHHHHHHHcCCHHHHHhCcc-----cccccccC
Confidence 9999999999999999999999999999999999999875 788999999999999999999999 99999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEE
Q psy13349 498 HGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCV 577 (604)
Q Consensus 498 ~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i 577 (604)
+|.+||||||||++|||||+++|+++|||||||+||+++++.+.+.+++..+++|+|+||||+++++.||||++|++|++
T Consensus 480 ~~~~LSgGq~qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i 559 (595)
T 2yl4_A 480 KGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQEALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKI 559 (595)
T ss_dssp SSCCCCHHHHHHHHHHHHHHHCCSEEEEECCCSSCCHHHHHHHHHHHHHHHTTSEEEEECCCHHHHHHSSEEEEEETTEE
T ss_pred CCCcCCHHHHHHHHHHHHHHcCCCEEEEECcccCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHcCCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999998789999999999999999999999999999
Q ss_pred eEecChhHHhhc-CcHHHHHHHHhhc
Q psy13349 578 AEEGSHLDLLKK-NGLYSRLWRHQNK 602 (604)
Q Consensus 578 v~~g~~~~l~~~-~~~y~~l~~~q~~ 602 (604)
++.|+|+|+++. ++.|+++++.|..
T Consensus 560 ~~~g~~~~l~~~~~~~~~~~~~~q~~ 585 (595)
T 2yl4_A 560 TEYGKHEELLSKPNGIYRKLMNKQSF 585 (595)
T ss_dssp EEEECSCC------C-----------
T ss_pred EEECCHHHHHhCCChHHHHHHHHhhc
Confidence 999999999984 8999999987753
No 9
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=1.3e-86 Score=803.89 Aligned_cols=570 Identities=26% Similarity=0.307 Sum_probs=491.0
Q ss_pred HHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--------chh--------hhhhHHHHHHHHH
Q psy13349 26 SFILKCI-YGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKP--------SLL--------WKNYSSYILLLGF 88 (604)
Q Consensus 26 ~~l~~~~-~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~--------~~~--------~~~~~~~l~~~~~ 88 (604)
+.++++. +++++.++.+++++++++++.++.|++++.++|.+..... ... .......+..+.+
T Consensus 36 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (1284)
T 3g5u_A 36 LTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYT 115 (1284)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHHHHHHH
Confidence 3344555 4567778888999999999999999999999997642110 000 0000111111122
Q ss_pred HHHHH-HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q psy13349 89 ILISS-TVFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITI 167 (604)
Q Consensus 89 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~ 167 (604)
++.+. .++.++..++. ...+.++..++|.++|+|++++|+.||+++++|++++|+++|++.+++++...+..++..++
T Consensus 116 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~ 194 (1284)
T 3g5u_A 116 GIGAGVLIVAYIQVSFW-CLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMA 194 (1284)
T ss_dssp HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHTTSTTHHHHSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHcCCHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22222 45556655543 35678899999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHH
Q psy13349 168 YIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYAR 247 (604)
Q Consensus 168 ~~i~~~~~l~~~~~~l~lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~ 247 (604)
.+++.+++++.++|.+++++++.+|+++++..++.++.++..++.++..++.++.+.|+++|+++||+||.|+.+.+++.
T Consensus 195 ~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~~~~~~ 274 (1284)
T 3g5u_A 195 TFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYN 274 (1284)
T ss_dssp HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 248 FAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFES 327 (604)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 327 (604)
+..++..+...+.........++..++..+..++++++|++++..|.+++|.+++++.+......++..+...+..+..+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (1284)
T 3g5u_A 275 NNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANA 354 (1284)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888888888888999999999999999999987777666656655566666666677
Q ss_pred HHHHHHHHHhhccccccccCcc-cccccccCceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHH
Q psy13349 328 IGTIQDGMNMLSKKYKIVDNYN-AKRLVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINN 404 (604)
Q Consensus 328 ~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ 404 (604)
...+++..+.++.+++..+... .....+..+.|+++||+|+|++ +.++|+|+||+|++||++|||||||||||||++
T Consensus 355 ~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ 434 (1284)
T 3g5u_A 355 RGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQ 434 (1284)
T ss_dssp HHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHH
T ss_pred HHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHH
Confidence 7777777777776554322111 1111223578999999999985 347999999999999999999999999999999
Q ss_pred HHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhh
Q psy13349 405 LLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTD 484 (604)
Q Consensus 405 ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~ 484 (604)
+|+|+|+|++|+|.+||.|+++++.+++|++|+||||+|++|++||+|||.+|.+++++++++++++.+++++++.++|+
T Consensus 435 ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~ 514 (1284)
T 3g5u_A 435 LMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPH 514 (1284)
T ss_dssp HTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHHHHSTT
T ss_pred HHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccc
Confidence 99999999999999999999999999999999999999999999999999999988999999999999999999999999
Q ss_pred hhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh
Q psy13349 485 EHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS 564 (604)
Q Consensus 485 ~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~ 564 (604)
|+||.+||+|.+|||||||||||||||+++|+|||||||||+||+++++.+.+.+++..+++|+|+||||++++.
T Consensus 515 -----g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 515 -----QFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp -----GGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred -----cccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998888999999999999999
Q ss_pred hcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHHHhh
Q psy13349 565 AMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 565 ~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~~q~ 601 (604)
.||+|+||++|+|+|+|+|+||++.++.|++++..|.
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~~~~~~~~~~~~~ 626 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHTTSHHHHHHHHTC
T ss_pred cCCEEEEEECCEEEEECCHHHHHhCCCHHHHHHHHhh
Confidence 9999999999999999999999999999999997764
No 10
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=100.00 E-value=9.1e-82 Score=761.60 Aligned_cols=569 Identities=26% Similarity=0.338 Sum_probs=476.4
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHH-HHHHHHHHHHHHH
Q psy13349 28 ILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISS-TVFVGLQTLFKHQ 106 (604)
Q Consensus 28 l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~ 106 (604)
++++.+++++.++.+++++++.+.+.++.+++++.+++.+...............+..+.+++.++ .+..++..++ ..
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~-~~ 774 (1284)
T 3g5u_A 696 ILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFT-FG 774 (1284)
T ss_dssp HHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 456678888889999999999999999999999999997764432111111111111111222222 3444444443 34
Q ss_pred HHHhhHHHHHHHHHHHHHHcCCcccccc--cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 107 VLSGNFPMLLRWNFHRLILNQSINFFQE--EFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYML 184 (604)
Q Consensus 107 ~~~~~~~~~lr~~l~~~ll~~~~~~f~~--~~~g~l~srl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l~ 184 (604)
..+.++..++|.++|++++++|+.||++ +++|++++|+++|++.+++++...+..++..++.+++.+++++.++|.++
T Consensus 775 ~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~ 854 (1284)
T 3g5u_A 775 KAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLT 854 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 5677899999999999999999999994 68999999999999999999998888888888888888899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 185 FPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLI 264 (604)
Q Consensus 185 lv~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (604)
+++++.+|+++++..+..+..++...+..+..++....+.|+++|+++||+|+.|+.+.+++.+..+...+...+.....
T Consensus 855 lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1284)
T 3g5u_A 855 LLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVF 934 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888999999999999999999999999999999998888888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc
Q psy13349 265 SSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKI 344 (604)
Q Consensus 265 ~~~~~~~~~~~~~~~~~i~~~g~~lv~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 344 (604)
.....+...+..+..++++++|++++..|.+++|.++++..+......++..+......+........+..+.++.+++.
T Consensus 935 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~ 1014 (1284)
T 3g5u_A 935 GITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEKTPEI 1014 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHSCCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcc
Confidence 77777777777888888899999999999999999988877665544443333222222233444455555555554433
Q ss_pred ccCcc-cccccccCceEEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 345 VDNYN-AKRLVVTNGKIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 345 ~~~~~-~~~~~~~~~~i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
.+... .....+..+.++++||+|+|++. .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|.+||
T Consensus 1015 ~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g 1094 (1284)
T 3g5u_A 1015 DSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDG 1094 (1284)
T ss_dssp SSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSS
T ss_pred cccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 22111 11112235689999999999853 4799999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCC
Q psy13349 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499 (604)
Q Consensus 422 ~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g 499 (604)
+|+++++.+++|++++||||||.+|++||+|||.+|.+ ..+++++.++++.+++++++.++|+ ||||.+||+|
T Consensus 1095 ~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~-----gldt~vge~G 1169 (1284)
T 3g5u_A 1095 KEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPD-----KYNTRVGDKG 1169 (1284)
T ss_dssp SCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTT-----GGGCBCSTTS
T ss_pred EEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCcc-----ccccccCCCC
Confidence 99999999999999999999999999999999999976 3689999999999999999999999 9999999999
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeE
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~ 579 (604)
.+||||||||+||||||+++|+|||||||||+||+++++.|++.+++..+++|+|+||||+++++.||||+||++|+|+|
T Consensus 1170 ~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~~ 1249 (1284)
T 3g5u_A 1170 TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKE 1249 (1284)
T ss_dssp CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEEE
T ss_pred CccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999998878999999999999999999999999999999
Q ss_pred ecChhHHhhcCcHHHHHHHHhhc
Q psy13349 580 EGSHLDLLKKNGLYSRLWRHQNK 602 (604)
Q Consensus 580 ~g~~~~l~~~~~~y~~l~~~q~~ 602 (604)
.|+|+||++++|.|++||+.|..
T Consensus 1250 ~g~~~~l~~~~g~y~~l~~~q~~ 1272 (1284)
T 3g5u_A 1250 HGTHQQLLAQKGIYFSMVSVQAG 1272 (1284)
T ss_dssp EECHHHHHHSCSHHHHHHHHHC-
T ss_pred ECCHHHHHhCCCHHHHHHHHHhh
Confidence 99999999999999999998865
No 11
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=100.00 E-value=3.9e-67 Score=540.28 Aligned_cols=241 Identities=50% Similarity=0.796 Sum_probs=233.6
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
.+.|+++||+|+|++++++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||.++.+++..++|++|
T Consensus 51 ~~~i~~~~vs~~y~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i 130 (306)
T 3nh6_A 51 KGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHI 130 (306)
T ss_dssp SCCEEEEEEEEESSTTCEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTE
T ss_pred CCeEEEEEEEEEcCCCCceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcce
Confidence 46799999999998667899999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 437 GMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 437 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+||||+|.+|++||+|||.+|.+..+++++.++++.+++++++..+|+ ||+|.+|++|.+||||||||++|||||
T Consensus 131 ~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~-----gl~t~~~~~g~~LSGGqrQRvaiARAL 205 (306)
T 3nh6_A 131 GVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPE-----GYRTQVGERGLKLSGGEKQRVAIARTI 205 (306)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCHHHHHHSTT-----GGGCEESTTSBCCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcHHHHHhccc-----hhhhHhcCCcCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999988899999999999999999999999 999999999999999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHH
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l 596 (604)
+++|+|||||||||+||+.++..|++.|+++.+++|+|+||||++++..||+|++|++|+|++.|+|+||++.++.|+++
T Consensus 206 ~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~aD~i~vl~~G~iv~~G~~~el~~~~~~y~~l 285 (306)
T 3nh6_A 206 LKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKDGCIVERGRHEALLSRGGVYADM 285 (306)
T ss_dssp HHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHTCSEEEEEETTEEEEEECHHHHHHHTSHHHHH
T ss_pred HhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHHHhcChHHHHH
Confidence 99999999999999999999999999999988899999999999999999999999999999999999999999999999
Q ss_pred HHHhhc
Q psy13349 597 WRHQNK 602 (604)
Q Consensus 597 ~~~q~~ 602 (604)
|+.|..
T Consensus 286 ~~~q~~ 291 (306)
T 3nh6_A 286 WQLQQG 291 (306)
T ss_dssp HHHHHC
T ss_pred HHHHHh
Confidence 988764
No 12
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=100.00 E-value=2.4e-58 Score=462.90 Aligned_cols=238 Identities=49% Similarity=0.775 Sum_probs=224.8
Q ss_pred ceEEEEEEEEEeC-CCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 358 GKIFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 358 ~~i~~~~vsf~y~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
.+|+++||+|+|+ +++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.|
T Consensus 6 ~~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 6 HDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 4699999999994 356799999999999999999999999999999999999999999999999999988888889999
Q ss_pred eEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 437 GMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 437 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+||||++.+|+.|++||+.++.+..+++++.++++.+++.+++..+|. |+++.+++.+.+||||||||++|||||
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----gl~~~~~~~~~~LSgGq~qRv~iAraL 160 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELRE-----GYNTIVGEQGAGLSGGQRQRIAIARAL 160 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTT-----GGGCBCSTTTTCCCHHHHHHHHHHHHH
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcc-----hhhhhhhCCCCCCCHHHHHHHHHHHHH
Confidence 999999999999999999998766677888899999999999999998 999999999999999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhc-CcHHHH
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSR 595 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~y~~ 595 (604)
+++|+++|||||||+||+.+++.+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+++++.+. ++.|++
T Consensus 161 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~ 240 (247)
T 2ff7_A 161 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240 (247)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHH
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHH
Confidence 9999999999999999999999999999888778999999999999888999999999999999999999987 889999
Q ss_pred HHHHh
Q psy13349 596 LWRHQ 600 (604)
Q Consensus 596 l~~~q 600 (604)
++..|
T Consensus 241 l~~~~ 245 (247)
T 2ff7_A 241 LYQLQ 245 (247)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 99866
No 13
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=100.00 E-value=4.9e-57 Score=456.71 Aligned_cols=239 Identities=47% Similarity=0.765 Sum_probs=223.7
Q ss_pred ceEEEEEEEEEeCCC--CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q psy13349 358 GKIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
..|+++||+|+|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++| +|+|.++|.++...+...+|+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999753 4699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred ceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 436 IGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 436 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|+||||+|.+|+.|++||+.++.+..+++++.++++.+++.+++..+|+ |++|.+++.+.+||||||||++||||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~-----~~~~~~~~~~~~LSgGqkqRv~lAra 169 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPK-----KWDTIVGNKGMKLSGGERQRIAIARC 169 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTT-----GGGCEESSSSBCCCHHHHHHHHHHHH
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccc-----cccccccCCcCcCCHHHHHHHHHHHH
Confidence 9999999999999999999998655667788888999999999999998 99999999999999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHH
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSR 595 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~ 595 (604)
|+++|++||||||||+||+.++..+.+.|+++.+++|+|+|||+++.++.||+|++|++|++++.|+++++.+.++.|.+
T Consensus 170 L~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~ 249 (260)
T 2ghi_A 170 LLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLNGEYAE 249 (260)
T ss_dssp HHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHHTSHHHH
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 99999999999999999999999999999988778999999999999888999999999999999999999998899999
Q ss_pred HHHHhhc
Q psy13349 596 LWRHQNK 602 (604)
Q Consensus 596 l~~~q~~ 602 (604)
+|..|..
T Consensus 250 ~~~~~~~ 256 (260)
T 2ghi_A 250 MWNMQSG 256 (260)
T ss_dssp HHHHHHC
T ss_pred HHHhhhh
Confidence 9987753
No 14
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=100.00 E-value=5.7e-58 Score=459.48 Aligned_cols=237 Identities=44% Similarity=0.721 Sum_probs=221.7
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++||+|+|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++++||
T Consensus 2 l~~~~l~~~y~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v 81 (243)
T 1mv5_A 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIGFV 81 (243)
T ss_dssp EEEEEEEECSSSSSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCCEE
T ss_pred EEEEEEEEEeCCCCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEEEE
Confidence 78999999995446799999999999999999999999999999999999999999999999999887777788999999
Q ss_pred cccCcCCcccHHHHHhcC-CCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 440 TQDTSLLHRSIRDNILYG-RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 440 ~Q~~~lf~~ti~eNi~~g-~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
||++.+|+.|++||+.++ .+..+++++.++++.+++.+++.++|. |+++.+++.+.+||||||||++|||||++
T Consensus 82 ~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~-----gl~~~~~~~~~~LSgGq~qrv~lAral~~ 156 (243)
T 1mv5_A 82 SQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPD-----QLNTEVGERGVKISGGQRQRLAIARAFLR 156 (243)
T ss_dssp CCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTT-----GGGCEESTTSBCCCHHHHHHHHHHHHHHH
T ss_pred cCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCcc-----chhchhccCcCcCCHHHHHHHHHHHHHhc
Confidence 999999999999999998 555677888899999999888888988 99999999999999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHH
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~ 598 (604)
+|++||||||||+||+.+++.+.+.|++..+++|+|+|||+++.++.||+|++|++|++++.|+++++.+..+.|+++|.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 236 (243)
T 1mv5_A 157 NPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236 (243)
T ss_dssp CCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHHCHHHHHHHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhccHHHHHHHH
Confidence 99999999999999999999999999887778999999999999888999999999999999999999988888999987
Q ss_pred Hhh
Q psy13349 599 HQN 601 (604)
Q Consensus 599 ~q~ 601 (604)
.+.
T Consensus 237 ~~~ 239 (243)
T 1mv5_A 237 EQL 239 (243)
T ss_dssp CCC
T ss_pred hhh
Confidence 653
No 15
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=100.00 E-value=1.2e-56 Score=456.34 Aligned_cols=240 Identities=36% Similarity=0.628 Sum_probs=219.8
Q ss_pred ceEEEEEEEEEeCC--CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q psy13349 358 GKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 358 ~~i~~~~vsf~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
+.|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 15 ~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~ 94 (271)
T 2ixe_A 15 GLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQ 94 (271)
T ss_dssp CCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHHH
T ss_pred ceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhcc
Confidence 46999999999975 2579999999999999999999999999999999999999999999999999988888888899
Q ss_pred ceEEcccCcCCcccHHHHHhcCCCCCCH-HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 436 IGMVTQDTSLLHRSIRDNILYGRPDASE-CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 436 i~~v~Q~~~lf~~ti~eNi~~g~~~~~~-~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
|+||||++.+|+.|++||+.++.+..++ +++.++++..++.++++.+|+ |+++.+++.+.+||||||||++|||
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~-----gl~~~~~~~~~~LSgGq~QRv~lAr 169 (271)
T 2ixe_A 95 VAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQ-----GYDTEVGETGNQLSGGQRQAVALAR 169 (271)
T ss_dssp EEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTT-----GGGSBCCGGGTTSCHHHHHHHHHHH
T ss_pred EEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhc-----chhhhhcCCcCCCCHHHHHHHHHHH
Confidence 9999999999999999999998654444 567777777788899999998 9999999999999999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcH
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGL 592 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~ 592 (604)
||+++|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+..+.
T Consensus 170 aL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~ 249 (271)
T 2ixe_A 170 ALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGGC 249 (271)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHHTSH
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCcHH
Confidence 99999999999999999999999999999998754 8999999999999988999999999999999999999998899
Q ss_pred HHHHHHHhhc
Q psy13349 593 YSRLWRHQNK 602 (604)
Q Consensus 593 y~~l~~~q~~ 602 (604)
|.+++..+..
T Consensus 250 ~~~~~~~~~~ 259 (271)
T 2ixe_A 250 YRSMVEALAA 259 (271)
T ss_dssp HHHHHHC---
T ss_pred HHHHHHHhhc
Confidence 9999876643
No 16
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=100.00 E-value=1.4e-53 Score=425.82 Aligned_cols=225 Identities=30% Similarity=0.511 Sum_probs=202.8
Q ss_pred eEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 359 KIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
.++++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| .++
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i~ 69 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SVA 69 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CEE
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EEE
Confidence 3899999999974 46799999999999999999999999999999999999999999999999 499
Q ss_pred EEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 438 MVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 438 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
||||+|.+|+.|++||+.++.+ .++++..++.+..++.+.+..+|. |++|.+++.+.+||||||||++|||||+
T Consensus 70 ~v~Q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~LSgGqkqRv~lAraL~ 143 (237)
T 2cbz_A 70 YVPQQAWIQNDSLRENILFGCQ-LEEPYYRSVIQACALLPDLEILPS-----GDRTEIGEKGVNLSGGQKQRVSLARAVY 143 (237)
T ss_dssp EECSSCCCCSEEHHHHHHTTSC-CCTTHHHHHHHHTTCHHHHTTSTT-----GGGSEESTTSBCCCHHHHHHHHHHHHHH
T ss_pred EEcCCCcCCCcCHHHHhhCccc-cCHHHHHHHHHHHhhHHHHHhccc-----cccccccCCCCCCCHHHHHHHHHHHHHh
Confidence 9999999998999999999754 233445566666666666777777 8899999999999999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHH---HHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHH
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLY---NLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYS 594 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~---~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~ 594 (604)
++|+++|||||||+||+.++..+.+.+. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++.+.++.|.
T Consensus 144 ~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 223 (237)
T 2cbz_A 144 SNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARDGAFA 223 (237)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHHTSHHH
T ss_pred cCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhccHHHH
Confidence 9999999999999999999999999984 3445899999999999988899999999999999999999999999999
Q ss_pred HHHHHhhc
Q psy13349 595 RLWRHQNK 602 (604)
Q Consensus 595 ~l~~~q~~ 602 (604)
+++..|..
T Consensus 224 ~~~~~~~~ 231 (237)
T 2cbz_A 224 EFLRTYAS 231 (237)
T ss_dssp HHHHHTCC
T ss_pred HHHHHHHh
Confidence 99988754
No 17
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-53 Score=452.34 Aligned_cols=232 Identities=28% Similarity=0.479 Sum_probs=215.7
Q ss_pred cCceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc
Q psy13349 356 TNGKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE 434 (604)
Q Consensus 356 ~~~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~ 434 (604)
..+.|+++||+|+|++ +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++...+...+|+
T Consensus 16 ~~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~rr 94 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWRK 94 (390)
T ss_dssp SSCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHHH
T ss_pred CCCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHhC
Confidence 3467999999999963 4679999999999999999999999999999999999998 8999999999999999999999
Q ss_pred cceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 435 QIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 435 ~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
.++||||++.+|+.|++||+.+.. ...++++.++++.+++.+++.+.|. +++|.++++|.+||||||||+||||
T Consensus 95 ~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~-----~l~~~i~~~g~~LSGGqrQRvalAR 168 (390)
T 3gd7_A 95 AFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPG-----KLDFVLVDGGCVLSHGHKQLMCLAR 168 (390)
T ss_dssp TEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTT-----GGGCEECTTTTTSCHHHHHHHHHHH
T ss_pred CEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhccc-----ccccccccccccCCHHHHHHHHHHH
Confidence 999999999999999999998654 3567889999999999999999998 8999999999999999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhc-CcHH
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLY 593 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~-~~~y 593 (604)
||+++|++||||||||+||+.++..+.+.|++..+++|+|+|||+++.+..||||++|++|+|++.|+++|+.+. ...|
T Consensus 169 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~ 248 (390)
T 3gd7_A 169 SVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRF 248 (390)
T ss_dssp HHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHH
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchH
Confidence 999999999999999999999999999999887778999999999999888999999999999999999999875 3444
Q ss_pred H
Q psy13349 594 S 594 (604)
Q Consensus 594 ~ 594 (604)
.
T Consensus 249 v 249 (390)
T 3gd7_A 249 V 249 (390)
T ss_dssp H
T ss_pred H
Confidence 3
No 18
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=100.00 E-value=4.4e-53 Score=420.09 Aligned_cols=221 Identities=25% Similarity=0.433 Sum_probs=197.9
Q ss_pred ceEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 358 GKIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 358 ~~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
+.++++||+|+|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| .+
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~i 71 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RI 71 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------CE
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------EE
Confidence 46999999999974 46799999999999999999999999999999999999999999999998 49
Q ss_pred eEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 437 GMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 437 ~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+||||+|.+|+.|++||+.++.+ ..+.+..++++..++.+++..+|. +.++.+++.+.+||||||||++|||||
T Consensus 72 ~~v~q~~~~~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~LSgGqkqrv~lAral 145 (229)
T 2pze_A 72 SFCSQFSWIMPGTIKENIIFGVS-YDEYRYRSVIKACQLEEDISKFAE-----KDNIVLGEGGITLSGGQRARISLARAV 145 (229)
T ss_dssp EEECSSCCCCSBCHHHHHHTTSC-CCHHHHHHHHHHTTCHHHHTTSTT-----GGGSCBCTTCTTSCHHHHHHHHHHHHH
T ss_pred EEEecCCcccCCCHHHHhhccCC-cChHHHHHHHHHhCcHHHHHhCcc-----cccccccCCCCcCCHHHHHHHHHHHHH
Confidence 99999999999999999999753 234445566677788888888887 889999999999999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHH-HHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHH
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSL-YNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSR 595 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i-~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~ 595 (604)
+++|+++|||||||+||+.+++.+.+.+ .+..+++|+|+|||+++.++.||+|++|++|++++.|+++++.+.++.|.+
T Consensus 146 ~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 225 (229)
T 2pze_A 146 YKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQPDFSS 225 (229)
T ss_dssp HSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC--CHHH
T ss_pred hcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhcChHHHH
Confidence 9999999999999999999999999974 555568999999999999888999999999999999999999887777776
Q ss_pred HH
Q psy13349 596 LW 597 (604)
Q Consensus 596 l~ 597 (604)
++
T Consensus 226 ~~ 227 (229)
T 2pze_A 226 KL 227 (229)
T ss_dssp HH
T ss_pred Hh
Confidence 65
No 19
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=100.00 E-value=1.3e-51 Score=419.20 Aligned_cols=223 Identities=26% Similarity=0.417 Sum_probs=188.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS--NVSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~--~~~~~~~r~~i 436 (604)
.|+++||+|+|+++.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.|
T Consensus 7 ~l~i~~ls~~y~~~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~i 86 (275)
T 3gfo_A 7 ILKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRESI 86 (275)
T ss_dssp EEEEEEEEEECTTSCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHHSE
T ss_pred EEEEEEEEEEECCCCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhCcE
Confidence 5899999999976667999999999999999999999999999999999999999999999999985 22345678899
Q ss_pred eEEcccC--cCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 437 GMVTQDT--SLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 437 ~~v~Q~~--~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+||||+| .+|..|++||+.++.. ..+.++..+.+ .+.++.+ |++........+||||||||++|
T Consensus 87 g~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~-------~L~~~~~~~~~~LSgGqkQRv~i 154 (275)
T 3gfo_A 87 GIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRV-----DNALKRT-------GIEHLKDKPTHCLSFGQKKRVAI 154 (275)
T ss_dssp EEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHH-----HHHHHHT-------TCGGGTTSBGGGSCHHHHHHHHH
T ss_pred EEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc-------CCchhhcCCcccCCHHHHHHHHH
Confidence 9999997 4788899999988632 23333332222 2222222 66666667778999999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhc
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||||+.+|++||||||||+||+.++..+.+.|+++. +++|+|+|||+++.+.. ||||++|++|++++.|+++++.+.
T Consensus 155 AraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 155 AGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred HHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998875 38999999999998865 999999999999999999999876
Q ss_pred CcHH
Q psy13349 590 NGLY 593 (604)
Q Consensus 590 ~~~y 593 (604)
...+
T Consensus 235 ~~~~ 238 (275)
T 3gfo_A 235 KEVI 238 (275)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 20
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=100.00 E-value=1.7e-51 Score=410.07 Aligned_cols=216 Identities=31% Similarity=0.432 Sum_probs=180.2
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH----
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL---- 432 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~---- 432 (604)
++++||+|+|+++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..++
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 7899999999742 369999999999999999999999999999999999999999999999999999887653
Q ss_pred hccceEEcccCcCCcc-cHHHHHhcCC-----CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc-ccCCCCCChh
Q psy13349 433 REQIGMVTQDTSLLHR-SIRDNILYGR-----PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV-GEHGIKLSGG 505 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~-ti~eNi~~g~-----~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v-~e~g~~LSgG 505 (604)
|++++||||++.+|+. |++||+.++. ...+.++..+. +.+.++.+ |+.... .....+||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~-------~l~~~~~~~~~~~LSgG 149 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKR-----ALECLKMA-------ELEERFANHKPNQLSGG 149 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHH-----HHHHHHHT-------TCCGGGTTCCGGGSCHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHH-----HHHHHHHC-------CCChhhhhCChhhCCHH
Confidence 4579999999999977 9999998742 12222222211 11222221 554433 5667899999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCeEEEEeCCEEeEecCh
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~ 583 (604)
||||++|||||+.+|++||||||||+||+.++..+.+.++++.+ ++|+|+|||+++..+.||||++|++|++++.|+.
T Consensus 150 q~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~ 229 (235)
T 3tif_A 150 QQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (235)
T ss_dssp HHHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcCh
Confidence 99999999999999999999999999999999999999988753 8999999999998888999999999999999987
Q ss_pred hHHh
Q psy13349 584 LDLL 587 (604)
Q Consensus 584 ~~l~ 587 (604)
+++.
T Consensus 230 ~~~~ 233 (235)
T 3tif_A 230 RGFD 233 (235)
T ss_dssp C---
T ss_pred hhhc
Confidence 7754
No 21
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=100.00 E-value=9.8e-51 Score=425.20 Aligned_cols=220 Identities=30% Similarity=0.451 Sum_probs=189.0
Q ss_pred ceEEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---
Q psy13349 358 GKIFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES--- 431 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~--- 431 (604)
..|+++||+++|+++ .++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+..+
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 469999999999752 46999999999999999999999999999999999999999999999999999988654
Q ss_pred HhccceEEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 432 LREQIGMVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
+|+.||||||++.+|+. |++||+.++.. ..+.++..+.+ .+.++.+ |+.........+|||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v-----~~lL~~v-------gL~~~~~~~~~~LSGGqkQ 170 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV-----TELLSLV-------GLGDKHDSYPSNLSGGQKQ 170 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHH-----HHHHHHH-------TCGGGTTCCTTTSCHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHH-----HHHHHHc-------CCchHhcCChhhCCHHHHH
Confidence 47889999999999876 99999988621 22333322211 2222222 6666666778899999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhH
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLD 585 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~ 585 (604)
|++|||||+.+|++||||||||+||+.+...+++.|+++. .++|+|+|||+++.+.. ||||++|++|++++.|+++|
T Consensus 171 RVaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~e 250 (366)
T 3tui_C 171 RVAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSE 250 (366)
T ss_dssp HHHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHH
T ss_pred HHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHH
Confidence 9999999999999999999999999999999999998875 38999999999999865 99999999999999999999
Q ss_pred Hhhc
Q psy13349 586 LLKK 589 (604)
Q Consensus 586 l~~~ 589 (604)
+.+.
T Consensus 251 v~~~ 254 (366)
T 3tui_C 251 VFSH 254 (366)
T ss_dssp HHSS
T ss_pred HHhC
Confidence 9875
No 22
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=1.4e-50 Score=405.00 Aligned_cols=219 Identities=20% Similarity=0.371 Sum_probs=186.2
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH-hccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL-REQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~-r~~i~ 437 (604)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ ++.++
T Consensus 6 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 84 (240)
T 1ji0_A 6 VLEVQSLHVYYGA-IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMGIA 84 (240)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTTEE
T ss_pred eEEEEeEEEEECC-eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCCEE
Confidence 4899999999975 579999999999999999999999999999999999999999999999999988776654 55699
Q ss_pred EEcccCcCCcc-cHHHHHhcCC-CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGR-PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~-~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
||||++.+|+. |++||+.++. +..+.++..+.+ ++.++.++ |++...++...+||||||||++||||
T Consensus 85 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~------~l~~~~~~~~~~LSgGq~qrv~lAra 153 (240)
T 1ji0_A 85 LVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP------RLKERLKQLGGTLSGGEQQMLAIGRA 153 (240)
T ss_dssp EECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH------HHHTTTTSBSSSSCHHHHHHHHHHHH
T ss_pred EEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc------cHhhHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999987 9999999864 222222222221 22333332 24445566778999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
|+.+|++||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+ +.||+|++|++|++++.|+++++.+.
T Consensus 154 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 154 LMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp HTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999998875 589999999999876 45999999999999999999998754
No 23
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=100.00 E-value=7.6e-50 Score=405.05 Aligned_cols=214 Identities=28% Similarity=0.384 Sum_probs=186.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|+++.|++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++|
T Consensus 11 ~l~~~~l~~~~~~-~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i~~ 89 (266)
T 4g1u_C 11 LLEASHLHYHVQQ-QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTRAV 89 (266)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHEEE
T ss_pred eEEEEeEEEEeCC-eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheEEE
Confidence 5899999999964 579999999999999999999999999999999999999999999999999999999889999999
Q ss_pred EcccCcC-CcccHHHHHhcCCCCCC----HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 439 VTQDTSL-LHRSIRDNILYGRPDAS----ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 439 v~Q~~~l-f~~ti~eNi~~g~~~~~----~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
++|++.+ |+.|++||+.++..... ++++.++++.. |+.........+||||||||++||
T Consensus 90 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LSgGq~QRv~iA 153 (266)
T 4g1u_C 90 MRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT----------------DCLALAQRDYRVLSGGEQQRVQLA 153 (266)
T ss_dssp ECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHT----------------TCSTTTTSBGGGCCHHHHHHHHHH
T ss_pred EecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHc----------------CChhHhcCCcccCCHHHHHHHHHH
Confidence 9999987 56799999998753221 22222232222 444444555678999999999999
Q ss_pred HHHcc------CCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChh
Q psy13349 514 RVILK------NAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 514 Rall~------~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~ 584 (604)
|||+. +|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++
T Consensus 154 raL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~ 233 (266)
T 4g1u_C 154 RVLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPE 233 (266)
T ss_dssp HHHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHH
T ss_pred HHHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 99999 9999999999999999999999999988752 579999999999886 49999999999999999999
Q ss_pred HHhhc
Q psy13349 585 DLLKK 589 (604)
Q Consensus 585 ~l~~~ 589 (604)
++.+.
T Consensus 234 ~~~~~ 238 (266)
T 4g1u_C 234 EVLNA 238 (266)
T ss_dssp HHCCH
T ss_pred HHhCc
Confidence 98764
No 24
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=100.00 E-value=1.7e-49 Score=401.34 Aligned_cols=219 Identities=30% Similarity=0.453 Sum_probs=185.7
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS--NVSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~--~~~~~~~r~~i 436 (604)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+.|
T Consensus 24 ~l~i~~l~~~y~~-~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~~i 102 (263)
T 2olj_A 24 MIDVHQLKKSFGS-LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVREEV 102 (263)
T ss_dssp SEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHHHE
T ss_pred eEEEEeEEEEECC-EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhCcE
Confidence 4999999999964 57999999999999999999999999999999999999999999999999985 33455678899
Q ss_pred eEEcccCcCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGR---PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~---~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
+||||++.+|+. |++||+.++. ...+.++..+ .+.+.++.+ |++........+||||||||++|
T Consensus 103 ~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~L~~~~~~~~~~LSgGqkQRv~l 170 (263)
T 2olj_A 103 GMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEA-----KAMELLDKV-------GLKDKAHAYPDSLSGGQAQRVAI 170 (263)
T ss_dssp EEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHT-------TCGGGTTSCGGGSCHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC-------CCchHhcCChhhCCHHHHHHHHH
Confidence 999999999876 9999998852 1122222111 112233322 56555666777999999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
||||+.+|++||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+..
T Consensus 171 AraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 250 (263)
T 2olj_A 171 ARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRP 250 (263)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999999998875 48999999999999864 9999999999999999999998653
No 25
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=100.00 E-value=3.5e-49 Score=397.74 Aligned_cols=217 Identities=22% Similarity=0.375 Sum_probs=185.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
+.|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ....+|+.++
T Consensus 14 ~~l~i~~l~~~y~~-~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~i~ 91 (256)
T 1vpl_A 14 GAVVVKDLRKRIGK-KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLIS 91 (256)
T ss_dssp CCEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTTEE
T ss_pred CeEEEEEEEEEECC-EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhcEE
Confidence 46999999999964 579999999999999999999999999999999999999999999999999876 4567788999
Q ss_pred EEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
||||++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 92 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gL~~~~~~~~~~LSgGq~qRv~lAr 159 (256)
T 1vpl_A 92 YLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEE-----MVERATEIA-------GLGEKIKDRVSTYSKGMVRKLLIAR 159 (256)
T ss_dssp EECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHH-----HHHHHHHHH-------CCGGGGGSBGGGCCHHHHHHHHHHH
T ss_pred EEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHC-------CCchHhcCChhhCCHHHHHHHHHHH
Confidence 99999999877 99999987521 122221111 112222222 5665566677899999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhh
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
||+.+|++||||||||+||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 160 aL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 160 ALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 9999999999999999999999999999998875 58999999999999876 99999999999999999999875
No 26
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=100.00 E-value=1.5e-49 Score=401.49 Aligned_cols=214 Identities=24% Similarity=0.375 Sum_probs=184.2
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccce
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i~ 437 (604)
.++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+.++
T Consensus 7 ~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~ 85 (257)
T 1g6h_A 7 ILRTENIVKYFGE-FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYGIV 85 (257)
T ss_dssp EEEEEEEEEEETT-EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHTEE
T ss_pred EEEEeeeEEEECC-EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCCEE
Confidence 4899999999965 579999999999999999999999999999999999999999999999999987764 34577899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCCC---------------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCC
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRPD---------------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIK 501 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~~---------------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~ 501 (604)
||||++.+|+. |++||+.++... .+.++. ...+.+.++.+ |++........+
T Consensus 86 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~-------~l~~~~~~~~~~ 153 (257)
T 1g6h_A 86 RTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEM-----VEKAFKILEFL-------KLSHLYDRKAGE 153 (257)
T ss_dssp ECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHH-----HHHHHHHHHHT-------TCGGGTTSBGGG
T ss_pred EEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHH-----HHHHHHHHHHc-------CCchhhCCCchh
Confidence 99999998864 999999986321 111111 11223334433 677777778889
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEeE
Q psy13349 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAE 579 (604)
Q Consensus 502 LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~ 579 (604)
||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++
T Consensus 154 LSgGqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~ 233 (257)
T 1g6h_A 154 LSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIA 233 (257)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999998875 4899999999999875 599999999999999
Q ss_pred ecChhH
Q psy13349 580 EGSHLD 585 (604)
Q Consensus 580 ~g~~~~ 585 (604)
.|++++
T Consensus 234 ~g~~~~ 239 (257)
T 1g6h_A 234 EGRGEE 239 (257)
T ss_dssp EEESHH
T ss_pred EeCHHH
Confidence 999999
No 27
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-49 Score=403.24 Aligned_cols=218 Identities=29% Similarity=0.470 Sum_probs=183.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC----------CC
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN----------VS 428 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~----------~~ 428 (604)
.++++||+++|++ .++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .+
T Consensus 6 ~l~i~~l~~~y~~-~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 84 (262)
T 1b0u_A 6 KLHVIDLHKRYGG-HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVAD 84 (262)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEESC
T ss_pred eEEEeeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccccC
Confidence 4899999999964 579999999999999999999999999999999999999999999999999861 44
Q ss_pred H---HHHhccceEEcccCcCCcc-cHHHHHhcCC---CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccc-cccCCC
Q psy13349 429 Q---ESLREQIGMVTQDTSLLHR-SIRDNILYGR---PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAH-VGEHGI 500 (604)
Q Consensus 429 ~---~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~---~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~-v~e~g~ 500 (604)
. ..+|+.++||||++.+|+. |++||+.++. ...+.++..+ .+.+.++.+ |++.. ......
T Consensus 85 ~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~L~~~~~~~~~~ 152 (262)
T 1b0u_A 85 KNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARE-----RALKYLAKV-------GIDERAQGKYPV 152 (262)
T ss_dssp HHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHH-----HHHHHHHHT-------TCCHHHHTSCGG
T ss_pred hhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHH-----HHHHHHHHc-------CCCchhhcCCcc
Confidence 3 3467889999999999876 9999998842 1122221111 112222222 55555 556677
Q ss_pred CCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHh-hcCeEEEEeCCEEe
Q psy13349 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVA 578 (604)
Q Consensus 501 ~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv 578 (604)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+. .||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998875 4899999999999886 59999999999999
Q ss_pred EecChhHHhhc
Q psy13349 579 EEGSHLDLLKK 589 (604)
Q Consensus 579 ~~g~~~~l~~~ 589 (604)
+.|+++++.+.
T Consensus 233 ~~g~~~~~~~~ 243 (262)
T 1b0u_A 233 EEGDPEQVFGN 243 (262)
T ss_dssp EEECHHHHHHS
T ss_pred EeCCHHHHHhC
Confidence 99999999865
No 28
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=100.00 E-value=2.4e-49 Score=414.58 Aligned_cols=224 Identities=26% Similarity=0.450 Sum_probs=185.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC--CCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN--VSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~--~~~~~~r~~i 436 (604)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .+....+++|
T Consensus 4 ~l~i~~ls~~y~~-~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r~i 82 (359)
T 3fvq_A 4 ALHIGHLSKSFQN-TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRERRL 82 (359)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGSCC
T ss_pred EEEEEeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhCCE
Confidence 4899999999964 579999999999999999999999999999999999999999999999999832 2223456789
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|||+|++.+|+. |++||+.++... .+.++..+. +.+.++.+ |++........+||||||||+|||
T Consensus 83 g~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~-----v~~~l~~~-------gL~~~~~r~~~~LSGGq~QRValA 150 (359)
T 3fvq_A 83 GYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQR-----IEAMLELT-------GISELAGRYPHELSGGQQQRAALA 150 (359)
T ss_dssp EEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHH-----HHHHHHHH-------TCGGGTTSCGGGSCHHHHHHHHHH
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHH-----HHHHHHHc-------CCchHhcCChhhCCHHHHHHHHHH
Confidence 999999999966 999999997431 222222111 12222222 666666677789999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
|||+.+|++||||||||+||+.+...+++.+.+.. .++|+|+|||+++.+.. ||||++|++|+|++.|+++|+.+..
T Consensus 151 rAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p 230 (359)
T 3fvq_A 151 RALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQP 230 (359)
T ss_dssp HHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCc
Confidence 99999999999999999999999999998776643 48999999999998754 9999999999999999999998753
Q ss_pred -cHHHH
Q psy13349 591 -GLYSR 595 (604)
Q Consensus 591 -~~y~~ 595 (604)
..|..
T Consensus 231 ~~~~~a 236 (359)
T 3fvq_A 231 ADLDAA 236 (359)
T ss_dssp SCHHHH
T ss_pred ccHHHH
Confidence 34433
No 29
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=100.00 E-value=1.5e-49 Score=393.31 Aligned_cols=211 Identities=23% Similarity=0.394 Sum_probs=179.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH---Hh-c
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES---LR-E 434 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~---~r-~ 434 (604)
.++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +| +
T Consensus 4 ~l~~~~l~~~y~~-~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 82 (224)
T 2pcj_A 4 ILRAENIKKVIRG-YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLRNR 82 (224)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHHHH
T ss_pred EEEEEeEEEEECC-EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHHhC
Confidence 4899999999975 57999999999999999999999999999999999999999999999999998776543 33 7
Q ss_pred cceEEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 435 QIGMVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 435 ~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
+++||||++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++
T Consensus 83 ~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgGq~qrv~ 150 (224)
T 2pcj_A 83 KLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKE-----RGEYLLSEL-------GLGDKLSRKPYELSGGEQQRVA 150 (224)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT-------TCTTCTTCCGGGSCHHHHHHHH
T ss_pred cEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHH-----HHHHHHHHc-------CCchhhhCChhhCCHHHHHHHH
Confidence 89999999998865 99999987521 112111111 122333322 5665566677799999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEeCCEEeEecC
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~ 582 (604)
|||||+.+|+++|||||||+||+.++..+.+.++++. +++|+|+|||+++.++.||+|++|++|+++++|+
T Consensus 151 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 151 IARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 9999999999999999999999999999999998875 5899999999999887799999999999999986
No 30
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=100.00 E-value=2.2e-49 Score=402.10 Aligned_cols=212 Identities=29% Similarity=0.458 Sum_probs=181.6
Q ss_pred EEEEEEEEEeC-CC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhcc
Q psy13349 360 IFFKNVSFSYD-QK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 360 i~~~~vsf~y~-~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
++++||+++|+ ++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 78999999997 33 5799999999999999999999999999999999999999999999999998642 67889
Q ss_pred ceEEcccC--cCCcccHHHHHhcCCCC-C----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCc--cccccCCCCCChhH
Q psy13349 436 IGMVTQDT--SLLHRSIRDNILYGRPD-A----SECELFNAAKCAEADIFIKSLTDEHGRKGYD--AHVGEHGIKLSGGQ 506 (604)
Q Consensus 436 i~~v~Q~~--~lf~~ti~eNi~~g~~~-~----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~--t~v~e~g~~LSgGq 506 (604)
++||||+| .+++.|++||+.++... . .++++.++++..++ + ........+|||||
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl----------------~~~~~~~~~~~~LSgGq 143 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGL----------------DFDSFKDRVPFFLSGGE 143 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTC----------------CHHHHTTCCGGGSCHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCc----------------CCcccccCChhhCCHHH
Confidence 99999996 46678999999987421 1 12344444444443 3 33334456899999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecChh
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~~ 584 (604)
|||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|+++
T Consensus 144 ~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~ 223 (266)
T 2yz2_A 144 KRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRM 223 (266)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHH
T ss_pred HHHHHHHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998874 58999999999998875 9999999999999999999
Q ss_pred HHhhcC
Q psy13349 585 DLLKKN 590 (604)
Q Consensus 585 ~l~~~~ 590 (604)
++.+..
T Consensus 224 ~~~~~~ 229 (266)
T 2yz2_A 224 EFLEKY 229 (266)
T ss_dssp HHHHHS
T ss_pred HHhcCc
Confidence 987653
No 31
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=100.00 E-value=1.3e-48 Score=411.77 Aligned_cols=222 Identities=27% Similarity=0.467 Sum_probs=188.1
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.|+++||+++|++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. ++.|+|
T Consensus 3 ~l~~~~l~~~yg~-~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~ig~ 79 (381)
T 3rlf_A 3 SVQLQNVTKAWGE-VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVGM 79 (381)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCEEE
T ss_pred EEEEEeEEEEECC-EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCEEE
Confidence 4899999999964 5799999999999999999999999999999999999999999999999999887765 467999
Q ss_pred EcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|+|++.+|+. |++||+.++.. ..+.++..+. ..+.++.+ |++........+||||||||++||||
T Consensus 80 VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~-----v~~~l~~~-------~L~~~~~r~p~~LSGGqrQRVaiArA 147 (381)
T 3rlf_A 80 VFQSYALYPHLSVAENMSFGLKLAGAKKEVINQR-----VNQVAEVL-------QLAHLLDRKPKALSGGQRQRVAIGRT 147 (381)
T ss_dssp ECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHH-----HHHHHHHT-------TCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred EecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc-------CCchhhcCChhHCCHHHHHHHHHHHH
Confidence 9999999976 99999998631 2233332221 12222222 66666667778999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc-Cc
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK-NG 591 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~-~~ 591 (604)
|+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++|+.+. ..
T Consensus 148 L~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~ 227 (381)
T 3rlf_A 148 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 227 (381)
T ss_dssp HHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSB
T ss_pred HHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCcc
Confidence 9999999999999999999999999999988742 899999999999875 5999999999999999999999875 33
Q ss_pred HHHH
Q psy13349 592 LYSR 595 (604)
Q Consensus 592 ~y~~ 595 (604)
.|..
T Consensus 228 ~~v~ 231 (381)
T 3rlf_A 228 RFVA 231 (381)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4443
No 32
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=100.00 E-value=3.5e-49 Score=404.40 Aligned_cols=217 Identities=26% Similarity=0.431 Sum_probs=179.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
+.++++||+|.+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +++
T Consensus 39 ~~l~~~~l~~~~---~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------~i~ 102 (290)
T 2bbs_A 39 DSLSFSNFSLLG---TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------RIS 102 (290)
T ss_dssp -----------C---CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------CEE
T ss_pred ceEEEEEEEEcC---ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------EEE
Confidence 469999999864 4699999999999999999999999999999999999999999999998 599
Q ss_pred EEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 438 MVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 438 ~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
||||++.+|++|++||+. +.. ..+....++++..++.+++..+|. ++++.+++.+.+||||||||++|||||+
T Consensus 103 ~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~~~~LSgGq~QRv~lAraL~ 175 (290)
T 2bbs_A 103 FCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAE-----KDNIVLGEGGITLSGGQRARISLARAVY 175 (290)
T ss_dssp EECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTT-----GGGCBC----CCCCHHHHHHHHHHHHHH
T ss_pred EEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccc-----cccchhcCccCcCCHHHHHHHHHHHHHH
Confidence 999999999999999998 542 234445566677788888888887 8899999999999999999999999999
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHH-HHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHH
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSL-YNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i-~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l 596 (604)
++|+++|||||||+||+.++..+.+.+ ++..+++|+|+|||+++.++.||+|++|++|++++.|+++++.+..+.|.+.
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~~~~~~~~ 255 (290)
T 2bbs_A 176 KDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLRPDFSSK 255 (290)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHHCHHHHHH
T ss_pred CCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhhcHHHHHH
Confidence 999999999999999999999999874 4445689999999999998889999999999999999999998755555554
Q ss_pred H
Q psy13349 597 W 597 (604)
Q Consensus 597 ~ 597 (604)
+
T Consensus 256 ~ 256 (290)
T 2bbs_A 256 L 256 (290)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=100.00 E-value=3.6e-49 Score=413.45 Aligned_cols=218 Identities=26% Similarity=0.446 Sum_probs=184.4
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++|++++|+++.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.|+
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ig 90 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRNVG 90 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSSEE
T ss_pred ceEEEEEEEEEEcCCCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCcEE
Confidence 469999999999434579999999999999999999999999999999999999999999999999987654 467899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
||+|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||++|||
T Consensus 91 ~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~-----~v~~~l~~~-------gL~~~~~r~~~~LSGGq~QRvalAr 158 (355)
T 1z47_A 91 LVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDA-----RVRELLRFM-------RLESYANRFPHELSGGQQQRVALAR 158 (355)
T ss_dssp EECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT-------TCGGGTTSCGGGSCHHHHHHHHHHH
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CChhHhcCCcccCCHHHHHHHHHHH
Confidence 99999999976 99999998631 122222111 112222222 5655556667799999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||+.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|+|++.|+++|+.+.
T Consensus 159 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~ 236 (355)
T 1z47_A 159 ALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEK 236 (355)
T ss_dssp HHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhC
Confidence 99999999999999999999999999999988753 799999999999875 4999999999999999999999875
No 34
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=100.00 E-value=1.3e-48 Score=391.94 Aligned_cols=216 Identities=26% Similarity=0.372 Sum_probs=186.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++||+++ ++|+|+||++++||+++|+||||||||||+++|+|+++|+ |+|.++|.++...+...+|++++|
T Consensus 4 ~l~~~~l~~~-----~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~~ 77 (249)
T 2qi9_C 4 VMQLQDVAES-----TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRAY 77 (249)
T ss_dssp EEEEEEEEET-----TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEEE
T ss_pred EEEEEceEEE-----EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEEE
Confidence 4899999986 5999999999999999999999999999999999999999 999999999988888888999999
Q ss_pred EcccCcCCcc-cHHHHHhcCCC-CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP-DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~-~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
|||++.+|.. |++||+.++.. ..+++++.++++.. |++........+||||||||++|||||
T Consensus 78 v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~----------------~l~~~~~~~~~~LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 78 LSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL----------------ALDDKLGRSTNQLSGGEWQRVRLAAVV 141 (249)
T ss_dssp ECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHT----------------TCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred ECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHc----------------CChhHhcCChhhCCHHHHHHHHHHHHH
Confidence 9999998865 99999998742 22233344433333 555555566779999999999999999
Q ss_pred ccCCC-------eEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHHh
Q psy13349 517 LKNAP-------ILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 517 l~~p~-------ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+.+|+ +||||||||+||+.+++.+.+.|+++. +++|+|++||+++.+ +.||++++|++|++++.|+++++.
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 221 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHS
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 99999 999999999999999999999998875 589999999999988 569999999999999999999987
Q ss_pred hcCcHHHHHH
Q psy13349 588 KKNGLYSRLW 597 (604)
Q Consensus 588 ~~~~~y~~l~ 597 (604)
+.... .+.|
T Consensus 222 ~~~~~-~~~~ 230 (249)
T 2qi9_C 222 TPPNL-AQAY 230 (249)
T ss_dssp CHHHH-HHHH
T ss_pred cChhH-HHHh
Confidence 63333 4444
No 35
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=100.00 E-value=4e-49 Score=402.30 Aligned_cols=217 Identities=26% Similarity=0.371 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC--CCCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS--NVSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~--~~~~~~~r~~i 436 (604)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|++|
T Consensus 21 ~l~~~~l~~~y~~-~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~~i 99 (279)
T 2ihy_A 21 LIQLDQIGRMKQG-KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHI 99 (279)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHTTE
T ss_pred eEEEEeEEEEECC-EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcCcE
Confidence 5999999999975 57999999999999999999999999999999999999999999999999987 67777888999
Q ss_pred eEEcccCcC-Ccc--cHHHHHhcCCCC-------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH
Q psy13349 437 GMVTQDTSL-LHR--SIRDNILYGRPD-------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ 506 (604)
Q Consensus 437 ~~v~Q~~~l-f~~--ti~eNi~~g~~~-------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq 506 (604)
+||||++.+ |.. |++||+.++... ..+++.. .+.+.++.+ |++........+|||||
T Consensus 100 ~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~------~~~~~l~~~-------gl~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 100 GFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRN------EAHQLLKLV-------GMSAKAQQYIGYLSTGE 166 (279)
T ss_dssp EEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHH------HHHHHHHHT-------TCGGGTTSBGGGSCHHH
T ss_pred EEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHH------HHHHHHHHc-------CChhHhcCChhhCCHHH
Confidence 999999875 544 999999986411 1111111 112222222 66666667778999999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-CcEE--EEEccChhHHh-hcCeEEEEeCCEEeEecC
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTV--IAIAHRLSTIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-~~t~--i~itH~l~~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999988753 7899 99999999875 599999999999999999
Q ss_pred hhHHhhc
Q psy13349 583 HLDLLKK 589 (604)
Q Consensus 583 ~~~l~~~ 589 (604)
++++.+.
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998754
No 36
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=100.00 E-value=1.2e-48 Score=410.41 Aligned_cols=217 Identities=25% Similarity=0.409 Sum_probs=184.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++. +++|+|
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (359)
T 2yyz_A 3 SIRVVNLKKYFGK-VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREVGM 79 (359)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEEEEEEECC-EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcEEE
Confidence 3899999999964 5699999999999999999999999999999999999999999999999999877653 578999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|+|++.+|+. |++||+.++... .+.++.. ..+.+.++.+ |++........+||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~-----~~v~~~l~~~-------~L~~~~~r~~~~LSgGq~QRvalArA 147 (359)
T 2yyz_A 80 VFQNYALYPHMTVFENIAFPLRARRISKDEVE-----KRVVEIARKL-------LIDNLLDRKPTQLSGGQQQRVALARA 147 (359)
T ss_dssp ECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTT-----HHHHHHHHHT-------TCGGGTTSCGGGSCHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHH-----HHHHHHHHHc-------CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 9999999976 999999997431 1111111 1112222222 55555566667999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
|+.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++|+.++.
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p 225 (359)
T 2yyz_A 148 LVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSP 225 (359)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988743 799999999999874 59999999999999999999998753
No 37
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=100.00 E-value=2e-48 Score=388.73 Aligned_cols=213 Identities=26% Similarity=0.409 Sum_probs=179.7
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ +|+|+||++++ |+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ..|++++||
T Consensus 2 l~~~~l~~~y~~---~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~~v 75 (240)
T 2onk_A 2 FLKVRAEKRLGN---FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIGFV 75 (240)
T ss_dssp CEEEEEEEEETT---EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCBCC
T ss_pred EEEEEEEEEeCC---EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEEEE
Confidence 689999999963 59999999999 999999999999999999999999999999999999987533 346789999
Q ss_pred cccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc
Q psy13349 440 TQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK 518 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~ 518 (604)
||++.+|+. |++||+.++........ . ...+.+.++.+ |++........+||||||||++|||||+.
T Consensus 76 ~q~~~l~~~ltv~enl~~~~~~~~~~~---~--~~~~~~~l~~~-------~l~~~~~~~~~~LSgGqkqRv~lAral~~ 143 (240)
T 2onk_A 76 PQDYALFPHLSVYRNIAYGLRNVERVE---R--DRRVREMAEKL-------GIAHLLDRKPARLSGGERQRVALARALVI 143 (240)
T ss_dssp CSSCCCCTTSCHHHHHHTTCTTSCHHH---H--HHHHHHHHHTT-------TCTTTTTCCGGGSCHHHHHHHHHHHHHTT
T ss_pred cCCCccCCCCcHHHHHHHHHHHcCCch---H--HHHHHHHHHHc-------CCHHHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 999999977 99999999753221111 0 11122223322 56555566677999999999999999999
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
+|+++|||||||+||+.+++.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++.+..
T Consensus 144 ~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 144 QPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp CCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 9999999999999999999999999988742 899999999999865 59999999999999999999987654
No 38
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=100.00 E-value=6.4e-49 Score=413.01 Aligned_cols=217 Identities=29% Similarity=0.454 Sum_probs=184.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++. +++|+|
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 79 (362)
T 2it1_A 3 EIKLENIVKKFGN-FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNVGL 79 (362)
T ss_dssp CEEEEEEEEESSS-SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTEEE
T ss_pred EEEEEeEEEEECC-EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcEEE
Confidence 3899999999964 5799999999999999999999999999999999999999999999999999877653 468999
Q ss_pred EcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|+|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||+|||||
T Consensus 80 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~-------~L~~~~~r~~~~LSGGq~QRvalArA 147 (362)
T 2it1_A 80 VFQNWALYPHMTVYKNIAFPLELRKAPREEIDK-----KVREVAKML-------HIDKLLNRYPWQLSGGQQQRVAIARA 147 (362)
T ss_dssp ECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHT-------TCTTCTTCCGGGSCHHHHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CCchHhhCChhhCCHHHHHHHHHHHH
Confidence 9999999976 99999998631 122222211 112222222 56555666677999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
|+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++|+.++.
T Consensus 148 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p 225 (362)
T 2it1_A 148 LVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKP 225 (362)
T ss_dssp HTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 9999999999999999999999999999988743 799999999999864 59999999999999999999998753
No 39
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=100.00 E-value=1.4e-48 Score=408.69 Aligned_cols=211 Identities=29% Similarity=0.471 Sum_probs=181.8
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
++++|++++|++ . +|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.++ .+++|+||
T Consensus 2 l~~~~l~~~y~~-~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig~v 77 (348)
T 3d31_A 2 IEIESLSRKWKN-F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIAFV 77 (348)
T ss_dssp EEEEEEEEECSS-C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCEEE
T ss_pred EEEEEEEEEECC-E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEEEE
Confidence 689999999965 4 9999999999999999999999999999999999999999999999999987554 46789999
Q ss_pred cccCcCCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 440 TQDTSLLHR-SIRDNILYGRP---DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 440 ~Q~~~lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
+|++.+|+. |++||+.++.. ...++++.++++.. |++........+||||||||+|||||
T Consensus 78 ~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~----------------~L~~~~~~~~~~LSgGq~QRvalAra 141 (348)
T 3d31_A 78 YQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL----------------KIEHLLDRNPLTLSGGEQQRVALARA 141 (348)
T ss_dssp CTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT----------------TCTTTTTSCGGGSCHHHHHHHHHHHH
T ss_pred ecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHc----------------CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 999999976 99999998631 01113333333322 55555556667999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
|+.+|++||||||||+||+.+++.+.+.|+++. .++|+|+|||+++.+. .||||++|++|++++.|+++|+.++.
T Consensus 142 L~~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p 219 (348)
T 3d31_A 142 LVTNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219 (348)
T ss_dssp TTSCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSC
T ss_pred HHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 999999999999999999999999999998874 3899999999999764 59999999999999999999998753
No 40
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=100.00 E-value=1.1e-48 Score=393.47 Aligned_cols=214 Identities=23% Similarity=0.360 Sum_probs=173.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHH-hcc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--YDIKYGEILIDGQNISNVSQESL-REQ 435 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~~~~~~~~~~~-r~~ 435 (604)
.++++||+|+|++ +++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +..
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (250)
T 2d2e_A 3 QLEIRDLWASIDG-ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARKG 81 (250)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHTT
T ss_pred eEEEEeEEEEECC-EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhCc
Confidence 3899999999964 5799999999999999999999999999999999999 89999999999999988876654 456
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCCC---C--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCC-CChhHH
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGRP---D--ASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIK-LSGGQR 507 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~~---~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~-LSgGq~ 507 (604)
++||||++.+|++ |++||+.++.. . .+.++..+ .+.+.++.+ |++ ........+ ||||||
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~~~LSgGqk 149 (250)
T 2d2e_A 82 LFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWT-----KVKKALELL-------DWDESYLSRYLNEGFSGGEK 149 (250)
T ss_dssp BCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHH-----HHHHHHHHH-------TCCGGGGGSBTTCC----HH
T ss_pred EEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHH-----HHHHHHHHc-------CCChhHhcCCcccCCCHHHH
Confidence 9999999999976 99999987421 0 11111111 112222222 664 333444456 999999
Q ss_pred HHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh--cCeEEEEeCCEEeEecChh
Q psy13349 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA--MDRLIVLDNGCVAEEGSHL 584 (604)
Q Consensus 508 QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~--~d~i~vl~~G~iv~~g~~~ 584 (604)
||++|||||+++|++||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999998875 47999999999999876 5999999999999999987
Q ss_pred H
Q psy13349 585 D 585 (604)
Q Consensus 585 ~ 585 (604)
+
T Consensus 230 ~ 230 (250)
T 2d2e_A 230 L 230 (250)
T ss_dssp H
T ss_pred H
Confidence 4
No 41
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=100.00 E-value=1.2e-48 Score=410.59 Aligned_cols=219 Identities=28% Similarity=0.417 Sum_probs=183.8
Q ss_pred eEEEEEEEEEeCCCCc--eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC---HHHHh
Q psy13349 359 KIFFKNVSFSYDQKHL--IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS---QESLR 433 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~--~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~---~~~~r 433 (604)
.++++|++++|++ .+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ....+
T Consensus 3 ~l~i~~l~~~y~~-~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~~ 81 (353)
T 1oxx_K 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (353)
T ss_dssp CEEEEEEEEEEGG-GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECC-EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChhh
Confidence 3899999999965 46 999999999999999999999999999999999999999999999999986521 22356
Q ss_pred ccceEEcccCcCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 434 EQIGMVTQDTSLLHR-SIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
++|+||+|++.+|+. |++||+.++... .+.++..+ .+.+.++.+ |++........+||||||||+
T Consensus 82 r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~-------~L~~~~~~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK-----RVEEVAKIL-------DIHHVLNHFPRELSGAQQQRV 149 (353)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHH-----HHHHHHHHT-------TCGGGTTSCGGGSCHHHHHHH
T ss_pred CCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc-------CCchHhcCChhhCCHHHHHHH
Confidence 789999999999976 999999997431 23222211 112222222 555555566679999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+|||||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++|+.
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999988742 799999999999875 59999999999999999999998
Q ss_pred hcC
Q psy13349 588 KKN 590 (604)
Q Consensus 588 ~~~ 590 (604)
++.
T Consensus 230 ~~p 232 (353)
T 1oxx_K 230 DNP 232 (353)
T ss_dssp HSC
T ss_pred hCc
Confidence 753
No 42
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=100.00 E-value=1.3e-47 Score=404.46 Aligned_cols=217 Identities=25% Similarity=0.391 Sum_probs=180.4
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...++. +++|+|
T Consensus 11 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~ig~ 87 (372)
T 1v43_A 11 EVKLENLTKRFGN-FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNISM 87 (372)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTEEE
T ss_pred eEEEEEEEEEECC-EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcEEE
Confidence 4999999999964 5699999999999999999999999999999999999999999999999999877653 568999
Q ss_pred EcccCcCCcc-cHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSLLHR-SIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~lf~~-ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|+|++.+|+. |++||+.|+... .+.++..+ .+.+.++.+ |++........+||||||||+|||||
T Consensus 88 v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~-------~L~~~~~r~~~~LSGGq~QRvalArA 155 (372)
T 1v43_A 88 VFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDK-----RVRWAAELL-------QIEELLNRYPAQLSGGQRQRVAVARA 155 (372)
T ss_dssp EEC------CCCHHHHHHTTCC--CCCHHHHHH-----HHHHHHHHT-------TCGGGTTSCTTTCCSSCHHHHHHHHH
T ss_pred EecCcccCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc-------CChhHhcCChhhCCHHHHHHHHHHHH
Confidence 9999999965 999999997531 23322211 112223322 66666667778999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHhhcC
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~~~~ 590 (604)
|+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||||++|++|++++.|+++|+.+..
T Consensus 156 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 233 (372)
T 1v43_A 156 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 233 (372)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCC
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 9999999999999999999999999999988743 799999999999874 59999999999999999999998753
No 43
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=100.00 E-value=2.7e-47 Score=386.86 Aligned_cols=217 Identities=22% Similarity=0.299 Sum_probs=180.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC--CCCCccEEEECCEeCCCCCHHHH-hcc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--YDIKYGEILIDGQNISNVSQESL-REQ 435 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~I~i~g~~~~~~~~~~~-r~~ 435 (604)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|.++...+.... +..
T Consensus 20 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~~~ 98 (267)
T 2zu0_C 20 MLSIKDLHVSVED-KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAGEG 98 (267)
T ss_dssp CEEEEEEEEEETT-EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHHHT
T ss_pred eEEEEeEEEEECC-EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhhCC
Confidence 5999999999964 5799999999999999999999999999999999999 57899999999999988776655 456
Q ss_pred ceEEcccCcCCcc-cHHHHHhcCC---------CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccc-cccCCC-CCC
Q psy13349 436 IGMVTQDTSLLHR-SIRDNILYGR---------PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAH-VGEHGI-KLS 503 (604)
Q Consensus 436 i~~v~Q~~~lf~~-ti~eNi~~g~---------~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~-v~e~g~-~LS 503 (604)
++||+|++.+|++ |++||+.++. +..+.++..+ .+.+.++.+ |+++. ...... +||
T Consensus 99 i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~-------gl~~~~~~~~~~~~LS 166 (267)
T 2zu0_C 99 IFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL-------KMPEDLLTRSVNVGFS 166 (267)
T ss_dssp EEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT-------TCCTTTTTSBTTTTCC
T ss_pred EEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc-------CCChhHhcCCcccCCC
Confidence 9999999999876 9999987531 1112222111 122333332 66543 333333 599
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh--cCeEEEEeCCEEeEe
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA--MDRLIVLDNGCVAEE 580 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~--~d~i~vl~~G~iv~~ 580 (604)
||||||++|||||+.+|++||||||||+||+.+++.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.
T Consensus 167 gGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~ 246 (267)
T 2zu0_C 167 GGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKS 246 (267)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999998875 47999999999998875 899999999999999
Q ss_pred cChhHHhh
Q psy13349 581 GSHLDLLK 588 (604)
Q Consensus 581 g~~~~l~~ 588 (604)
|+++++..
T Consensus 247 g~~~~~~~ 254 (267)
T 2zu0_C 247 GDFTLVKQ 254 (267)
T ss_dssp ECTTHHHH
T ss_pred cCHHHHhh
Confidence 99988743
No 44
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=100.00 E-value=1.9e-47 Score=403.97 Aligned_cols=216 Identities=26% Similarity=0.415 Sum_probs=182.9
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC------CCHHHH
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN------VSQESL 432 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~------~~~~~~ 432 (604)
.++++||+++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+ .++ .
T Consensus 3 ~l~~~~l~~~y~~-~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~--~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE-VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP--K 79 (372)
T ss_dssp EEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG--G
T ss_pred EEEEEeEEEEECC-EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH--h
Confidence 4899999999964 579999999999999999999999999999999999999999999999999865 443 3
Q ss_pred hccceEEcccCcCCcc-cHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 433 REQIGMVTQDTSLLHR-SIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
+++|+||+|++.+|+. |++||+.++.. ..+.++..+ .+.+.++.+ |++........+||||||||
T Consensus 80 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~-----~v~~~l~~~-------~L~~~~~r~~~~LSGGq~QR 147 (372)
T 1g29_1 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQ-----RVREVAELL-------GLTELLNRKPRELSGGQRQR 147 (372)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHH-----HHHHHHHHH-------TCGGGTTCCGGGSCHHHHHH
T ss_pred HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHC-------CCchHhcCCcccCCHHHHHH
Confidence 5789999999999965 99999998631 122222211 112222222 56555666677999999999
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHH
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l 586 (604)
+||||||+.+|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++|+
T Consensus 148 valArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l 227 (372)
T 1g29_1 148 VALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEV 227 (372)
T ss_dssp HHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999988753 799999999999875 5999999999999999999999
Q ss_pred hhc
Q psy13349 587 LKK 589 (604)
Q Consensus 587 ~~~ 589 (604)
.++
T Consensus 228 ~~~ 230 (372)
T 1g29_1 228 YDK 230 (372)
T ss_dssp HHS
T ss_pred HhC
Confidence 875
No 45
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=8.3e-48 Score=389.02 Aligned_cols=206 Identities=20% Similarity=0.293 Sum_probs=178.5
Q ss_pred EEEEEEEEEeCCC---CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 360 IFFKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~---~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
++++|++++|++. +++|+|+||+++ ||+++|+||||||||||+++|+|++ |++|+|.++|.++... .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999752 579999999999 9999999999999999999999999 9999999999998654 33 7789
Q ss_pred e-EEcccCcCCcccHHHHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhHHHHHHH
Q psy13349 437 G-MVTQDTSLLHRSIRDNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 437 ~-~v~Q~~~lf~~ti~eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq~Qrial 512 (604)
+ ||||++.+ ..|++||+.++.+ ...++++.++ ++.+ |++ ...+....+||||||||++|
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~---------l~~~-------gl~~~~~~~~~~~LSgGqkqRv~l 139 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEM---------LKAL-------KLGEEILRRKLYKLSAGQSVLVRT 139 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHH---------HHHT-------TCCGGGGGSBGGGSCHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHH---------HHHc-------CCChhHhcCChhhCCHHHHHHHHH
Confidence 9 99999998 8899999988532 2223333322 2222 666 66777788999999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh-hcC-eEEEEeCCEEeEecChhHHhhc
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMD-RLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~-~~d-~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
||||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+|||+++.+. .|| ++++|++|++++.|+++|+.+.
T Consensus 140 AraL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 140 SLALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp HHHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred HHHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 9999999999999999999999999999999988754 9999999999875 589 9999999999999999998753
No 46
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=100.00 E-value=2.5e-47 Score=383.91 Aligned_cols=211 Identities=27% Similarity=0.404 Sum_probs=175.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|++++|++++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. +++.++|
T Consensus 4 ~l~i~~l~~~y~~~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i~~ 70 (253)
T 2nq2_C 4 ALSVENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSIGF 70 (253)
T ss_dssp EEEEEEEEEEETTTTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCEEE
T ss_pred eEEEeeEEEEeCCCCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccEEE
Confidence 489999999997345799999999999999999999999999999999999999999998 3568999
Q ss_pred EcccCcCC-cccHHHHHhcCCCC-------CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH
Q psy13349 439 VTQDTSLL-HRSIRDNILYGRPD-------ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI 510 (604)
Q Consensus 439 v~Q~~~lf-~~ti~eNi~~g~~~-------~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri 510 (604)
|||++.+| ..|++||+.++... ...+. .+ .+.+.++.+ |++........+||||||||+
T Consensus 71 v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-~~-----~~~~~l~~~-------~l~~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 71 VPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHD-YQ-----VAMQALDYL-------NLTHLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp ECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHH-HH-----HHHHHHHHT-------TCGGGTTSBGGGSCHHHHHHH
T ss_pred EcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHH-HH-----HHHHHHHHc-------CChHHhcCChhhCCHHHHHHH
Confidence 99999988 55999999986410 11111 11 112222222 565556667789999999999
Q ss_pred HHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-C-CcEEEEEccChhHHh-hcCeEEEEeCCEEeEecChhHHh
Q psy13349 511 AIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-K-GKTVIAIAHRLSTIS-AMDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 511 alARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~-~~t~i~itH~l~~~~-~~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
+|||||+.+|++||||||||+||+.+++.+.+.|+++. + ++|+|++||+++.+. .||++++|++|+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 99999999999999999999999999999999998875 3 799999999999884 599999999999 9999999987
Q ss_pred hcCcHHHHHH
Q psy13349 588 KKNGLYSRLW 597 (604)
Q Consensus 588 ~~~~~y~~l~ 597 (604)
+.. .+.+.|
T Consensus 217 ~~~-~~~~~~ 225 (253)
T 2nq2_C 217 TSE-NLTALF 225 (253)
T ss_dssp CHH-HHHHHH
T ss_pred CcH-HHHHHh
Confidence 542 344444
No 47
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=100.00 E-value=1.1e-46 Score=369.45 Aligned_cols=196 Identities=21% Similarity=0.358 Sum_probs=165.1
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++||+++|++ ++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|+.++
T Consensus 9 ~~l~~~~ls~~y~~--~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i~ 81 (214)
T 1sgw_A 9 SKLEIRDLSVGYDK--PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKIF 81 (214)
T ss_dssp CEEEEEEEEEESSS--EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGEE
T ss_pred ceEEEEEEEEEeCC--eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcEE
Confidence 46999999999975 7999999999999999999999999999999999999999999999999875 3678899
Q ss_pred EEcccCcCCcc-cHHHHHhcCCC----CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 438 MVTQDTSLLHR-SIRDNILYGRP----DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 438 ~v~Q~~~lf~~-ti~eNi~~g~~----~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
||||++.+|+. |++||+.++.. ...++++.++ ++.+ |++.. ++...+||||||||++|
T Consensus 82 ~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~---------l~~~-------gl~~~-~~~~~~LSgGqkqrv~l 144 (214)
T 1sgw_A 82 FLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDA---------LESV-------EVLDL-KKKLGELSQGTIRRVQL 144 (214)
T ss_dssp EECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHH---------HHHT-------TCCCT-TSBGGGSCHHHHHHHHH
T ss_pred EEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHH---------HHHc-------CCCcC-CCChhhCCHHHHHHHHH
Confidence 99999999976 99999987521 1112223222 2222 66666 77788999999999999
Q ss_pred HHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEEe
Q psy13349 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCVA 578 (604)
Q Consensus 513 ARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv 578 (604)
||||+.+|+++||||||++||+.++..+.+.|++.. +++|+|++||+++.+.. ||+|+ +.+|+|-
T Consensus 145 araL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~~ 211 (214)
T 1sgw_A 145 ASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKID 211 (214)
T ss_dssp HHHTTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC---
T ss_pred HHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCccc
Confidence 999999999999999999999999999999998875 47899999999999877 56655 5567763
No 48
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=2.5e-37 Score=342.76 Aligned_cols=200 Identities=25% Similarity=0.353 Sum_probs=165.8
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|+++.|++ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.+ +..++|
T Consensus 287 ~l~~~~l~~~~~~--~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i~~ 351 (538)
T 1yqt_A 287 LVTYPRLVKDYGS--FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTVAY 351 (538)
T ss_dssp EEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCEEE
T ss_pred EEEEeeEEEEECC--EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceEEE
Confidence 5899999999964 4799999999999999999999999999999999999999999985 136999
Q ss_pred EcccCcC-CcccHHHHHhcC-CCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 439 VTQDTSL-LHRSIRDNILYG-RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 439 v~Q~~~l-f~~ti~eNi~~g-~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
|||++.. ++.|+.||+... .+...+ .+.+.++- ...|+.........+||||||||++|||||
T Consensus 352 v~Q~~~~~~~~tv~~~~~~~~~~~~~~------------~~~~~~~l---~~~~l~~~~~~~~~~LSGGe~qrv~lAraL 416 (538)
T 1yqt_A 352 KPQYIKADYEGTVYELLSKIDASKLNS------------NFYKTELL---KPLGIIDLYDREVNELSGGELQRVAIAATL 416 (538)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHTC------------HHHHHHTT---TTTTCGGGTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EecCCcCCCCCcHHHHHHhhhccCCCH------------HHHHHHHH---HHcCChhhhcCChhhCCHHHHHHHHHHHHH
Confidence 9999876 466999988643 110000 01111111 122666556667779999999999999999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeC--CEEeEecChhHHhh
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDN--GCVAEEGSHLDLLK 588 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~ 588 (604)
+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|+++++..
T Consensus 417 ~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 417 LRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp TSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 99999999999999999999999999998874 38999999999998875 999999986 78888999988775
No 49
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=4.2e-37 Score=344.54 Aligned_cols=199 Identities=26% Similarity=0.358 Sum_probs=166.3
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~ 438 (604)
.++++|+++.|++ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.+ +..++|
T Consensus 357 ~l~~~~l~~~~~~--~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~~ 421 (607)
T 3bk7_A 357 LVEYPRLVKDYGS--FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVAY 421 (607)
T ss_dssp EEEECCEEEECSS--CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEEE
T ss_pred EEEEeceEEEecc--eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEEE
Confidence 5899999999964 3799999999999999999999999999999999999999999986 136999
Q ss_pred EcccCcC-CcccHHHHHhcC-CCCC-CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 439 VTQDTSL-LHRSIRDNILYG-RPDA-SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 439 v~Q~~~l-f~~ti~eNi~~g-~~~~-~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
+||++.. ++.|+.||+... .+.. ..+. ..+.++.+ |+.........+||||||||++||||
T Consensus 422 v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~---------~~~~l~~~-------~l~~~~~~~~~~LSGGe~QRv~iAra 485 (607)
T 3bk7_A 422 KPQYIKAEYEGTVYELLSKIDSSKLNSNFY---------KTELLKPL-------GIIDLYDRNVEDLSGGELQRVAIAAT 485 (607)
T ss_dssp ECSSCCCCCSSBHHHHHHHHHHHHHHCHHH---------HHHTHHHH-------TCTTTTTSBGGGCCHHHHHHHHHHHH
T ss_pred EecCccCCCCCcHHHHHHhhhccCCCHHHH---------HHHHHHHc-------CCchHhcCChhhCCHHHHHHHHHHHH
Confidence 9999876 466999998653 1100 0111 12222222 55555566677999999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeC--CEEeEecChhHHhh
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDN--GCVAEEGSHLDLLK 588 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~ 588 (604)
|+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|+++++.+
T Consensus 486 L~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 486 LLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp HTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999998874 48999999999998875 999999986 88888999988775
No 50
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=5.5e-37 Score=339.32 Aligned_cols=201 Identities=21% Similarity=0.268 Sum_probs=164.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..++++|+++.|++ ..|+++||++++||++||+||||||||||+++|+|+++|++|+|.++| ..++
T Consensus 268 ~~l~~~~l~~~~~~--~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i~ 333 (538)
T 3ozx_A 268 TKMKWTKIIKKLGD--FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QILS 333 (538)
T ss_dssp EEEEECCEEEEETT--EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCEE
T ss_pred ceEEEcceEEEECC--EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eeeE
Confidence 35899999999965 468889999999999999999999999999999999999999999775 3589
Q ss_pred EEcccCcC-CcccHHHHHhcCCCCC---CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 438 MVTQDTSL-LHRSIRDNILYGRPDA---SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 438 ~v~Q~~~l-f~~ti~eNi~~g~~~~---~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|+||++.. +..|++||+.+..... ..+.+.++++. .|+.........+||||||||++||
T Consensus 334 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~----------------~~l~~~~~~~~~~LSGGq~QRv~iA 397 (538)
T 3ozx_A 334 YKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKR----------------LNLHRLLESNVNDLSGGELQKLYIA 397 (538)
T ss_dssp EECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTT----------------TTGGGCTTSBGGGCCHHHHHHHHHH
T ss_pred eechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHH----------------cCCHHHhcCChhhCCHHHHHHHHHH
Confidence 99999864 4679999998643221 11111122221 2555555666779999999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeC--CEEeEecChhHHhh
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDN--GCVAEEGSHLDLLK 588 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~ 588 (604)
|||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |.+...|++.++..
T Consensus 398 raL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 398 ATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred HHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 99999999999999999999999999999998874 47899999999998875 999999986 55666677665543
No 51
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=100.00 E-value=6e-41 Score=344.16 Aligned_cols=239 Identities=16% Similarity=0.176 Sum_probs=177.1
Q ss_pred hhCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCcccccccccCceEEEEEEEEEeC
Q psy13349 291 TKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYD 370 (604)
Q Consensus 291 ~~g~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~vsf~y~ 370 (604)
..+..+.+...+|+.+..+. .++..+...+..+........+..+.++.+++..+... ...+..+.|+++||+|+|+
T Consensus 36 a~~~~~~~n~~afl~~~~q~-~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~~--~~~~~~~~i~~~~vs~~y~ 112 (305)
T 2v9p_A 36 ALAAGSDSNARAFLATNSQA-KHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGEG--SWKSILTFFNYQNIELITF 112 (305)
T ss_dssp HHTTTTCHHHHHHTTCTTHH-HHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSSC--CTHHHHHHHHHTTCCHHHH
T ss_pred HHhcCccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCC--cccccCCeEEEEEEEEEcC
Confidence 34455566666666554332 33333333333333333333344444433322111111 1011123589999999997
Q ss_pred CCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccH
Q psy13349 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSI 450 (604)
Q Consensus 371 ~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti 450 (604)
.++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| +++++|++.+|++|+
T Consensus 113 --~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti 169 (305)
T 2v9p_A 113 --INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASL 169 (305)
T ss_dssp --HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGG
T ss_pred --hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccH
Confidence 57999999999999999999999999999999999999 7988 457899999999999
Q ss_pred HH-HHhcCCCCCCHHHHHHHHHHchHHHHHHH-hhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEecc
Q psy13349 451 RD-NILYGRPDASECELFNAAKCAEADIFIKS-LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528 (604)
Q Consensus 451 ~e-Ni~~g~~~~~~~~i~~a~~~~~~~~~i~~-lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ 528 (604)
+| ||.++ +++++ ++++++.. +|+ |+| |.+|||||||| |||++++|+|||
T Consensus 170 ~~~ni~~~-~~~~~----------~~~~~i~~~L~~-----gld------g~~LSgGqkQR---ARAll~~p~iLl---- 220 (305)
T 2v9p_A 170 ADTRAALV-DDATH----------ACWRYFDTYLRN-----ALD------GYPVSIDRKHK---AAVQIKAPPLLV---- 220 (305)
T ss_dssp TTCSCEEE-EEECH----------HHHHHHHHTTTG-----GGG------TCCEECCCSSC---CCCEECCCCEEE----
T ss_pred HHHhhccC-ccccH----------HHHHHHHHHhHc-----cCC------ccCcCHHHHHH---HHHHhCCCCEEE----
Confidence 98 99986 34443 34677887 887 887 77999999999 999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHHHhh
Q psy13349 529 TSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQN 601 (604)
Q Consensus 529 ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~~q~ 601 (604)
||+||+.+++.+.. +|||++.++.||+| +|++|++++.|+|+++ ++.|+++|..+.
T Consensus 221 Ts~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el---~~~y~~l~~~~~ 276 (305)
T 2v9p_A 221 TSNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW---KSFFVRLWGRLD 276 (305)
T ss_dssp EESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH---HHHHHHSTTTTT
T ss_pred ECCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH---HHHHHHHHHHcc
Confidence 99999999998852 39999999999999 9999999999999999 788999987553
No 52
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=9.7e-37 Score=352.68 Aligned_cols=208 Identities=23% Similarity=0.301 Sum_probs=153.8
Q ss_pred eEEEEEEEEEeCC-CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 359 KIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 359 ~i~~~~vsf~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
.++++|++|+|++ ++++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|. ..++
T Consensus 671 mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I~ 739 (986)
T 2iw3_A 671 IVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRIA 739 (986)
T ss_dssp EEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCEE
T ss_pred eEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cceE
Confidence 4999999999975 367999999999999999999999999999999999999999999999862 1477
Q ss_pred EEcccCcC-----CcccHHHHHh---------------------------------------------------------
Q psy13349 438 MVTQDTSL-----LHRSIRDNIL--------------------------------------------------------- 455 (604)
Q Consensus 438 ~v~Q~~~l-----f~~ti~eNi~--------------------------------------------------------- 455 (604)
|++|++.. .+.|+++|+.
T Consensus 740 yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~ 819 (986)
T 2iw3_A 740 YIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYEC 819 (986)
T ss_dssp EECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEE
T ss_pred eeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhhh
Confidence 77776531 1234555543
Q ss_pred ---------cCCC---CC--------CHHHHHH-------------HHHH----chHHHHHHHhhhhhhcCCCccc--cc
Q psy13349 456 ---------YGRP---DA--------SECELFN-------------AAKC----AEADIFIKSLTDEHGRKGYDAH--VG 496 (604)
Q Consensus 456 ---------~g~~---~~--------~~~~i~~-------------a~~~----~~~~~~i~~lp~~~~~~g~~t~--v~ 496 (604)
++.+ .. ..+++.. +... ....+.+.++ ....|++.. ..
T Consensus 820 ~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~---Le~lGL~~~~~~~ 896 (986)
T 2iw3_A 820 SFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEH---CSMLGLDPEIVSH 896 (986)
T ss_dssp EEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHH---HHHTTCCHHHHHH
T ss_pred hhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHH---HHHcCCCchhhcC
Confidence 2210 00 0000000 0000 0001111111 112367653 24
Q ss_pred cCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCC
Q psy13349 497 EHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNG 575 (604)
Q Consensus 497 e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G 575 (604)
....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. +.|+|+|||+++.+.. ||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 556799999999999999999999999999999999999999999999765 5799999999999865 8999999999
Q ss_pred EEeEecC
Q psy13349 576 CVAEEGS 582 (604)
Q Consensus 576 ~iv~~g~ 582 (604)
++++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9998775
No 53
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=331.19 Aligned_cols=199 Identities=25% Similarity=0.321 Sum_probs=164.0
Q ss_pred EEEEEEeCCCCceeeecceEEeCC-----cEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 363 KNVSFSYDQKHLIINNLSLTIQPG-----EKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 363 ~~vsf~y~~~~~~l~~isl~i~~G-----~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
++++|+|++..++++|+||++++| |++||+||||||||||+++|+|+.+|++|+. +. +..++
T Consensus 350 ~~~~~~y~~~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~i~ 416 (608)
T 3j16_B 350 ASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLNVS 416 (608)
T ss_dssp SSSCCEECCEEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCCEE
T ss_pred cceeEEecCcccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCcEE
Confidence 667889986556899999999999 7899999999999999999999999999962 11 23699
Q ss_pred EEcccCc-CCcccHHHHHhcCCCC--CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 438 MVTQDTS-LLHRSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 438 ~v~Q~~~-lf~~ti~eNi~~g~~~--~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
|+||+.. .|+.|++||+...... ...+... +.++.+ |+.........+||||||||++|||
T Consensus 417 ~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~---------~~l~~l-------~l~~~~~~~~~~LSGGqkQRv~iAr 480 (608)
T 3j16_B 417 MKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQT---------DVVKPL-------RIDDIIDQEVQHLSGGELQRVAIVL 480 (608)
T ss_dssp EECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHH---------HTHHHH-------TSTTTSSSBSSSCCHHHHHHHHHHH
T ss_pred EecccccccCCccHHHHHHHHhhcccccHHHHH---------HHHHHc-------CChhhhcCChhhCCHHHHHHHHHHH
Confidence 9999976 4678999998643221 1222111 222222 5555566677899999999999999
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeC--CEEeEecChhHHhhc
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDN--GCVAEEGSHLDLLKK 589 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~--G~iv~~g~~~~l~~~ 589 (604)
||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |+++..|+++++++.
T Consensus 481 aL~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 481 ALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp HTTSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred HHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999998864 48999999999998865 999999986 899999999999875
Q ss_pred C
Q psy13349 590 N 590 (604)
Q Consensus 590 ~ 590 (604)
.
T Consensus 561 ~ 561 (608)
T 3j16_B 561 C 561 (608)
T ss_dssp H
T ss_pred h
Confidence 3
No 54
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=100.00 E-value=7.8e-36 Score=334.25 Aligned_cols=197 Identities=21% Similarity=0.308 Sum_probs=156.2
Q ss_pred eEEE--------EEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE---------EECC
Q psy13349 359 KIFF--------KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI---------LIDG 421 (604)
Q Consensus 359 ~i~~--------~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I---------~i~g 421 (604)
.|++ +|++++|++...+|+|+| ++++||++||+||||||||||+++|+|+++|++|++ .++|
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G 161 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRG 161 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTT
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCC
Confidence 4788 899999975435899999 999999999999999999999999999999999996 4566
Q ss_pred EeCCCCCHH--HHhccceEEcccCc----CCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc
Q psy13349 422 QNISNVSQE--SLREQIGMVTQDTS----LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV 495 (604)
Q Consensus 422 ~~~~~~~~~--~~r~~i~~v~Q~~~----lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v 495 (604)
.++...... ..+..+++++|... ++.+|++||+..... .+++.++++.. |++...
T Consensus 162 ~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~l----------------gL~~~~ 222 (607)
T 3bk7_A 162 NELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKEL----------------ELENVL 222 (607)
T ss_dssp STHHHHHHHHHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHT----------------TCTTGG
T ss_pred EehhhhhhhhhhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHc----------------CCCchh
Confidence 554322111 12345888888743 445699999965221 12333333332 454445
Q ss_pred ccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEe
Q psy13349 496 GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLD 573 (604)
Q Consensus 496 ~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~ 573 (604)
.....+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|+
T Consensus 223 ~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~ 302 (607)
T 3bk7_A 223 DRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVY 302 (607)
T ss_dssp GSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEE
T ss_pred CCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEEC
Confidence 55566899999999999999999999999999999999999999999998875 48999999999998765 89999998
Q ss_pred CC
Q psy13349 574 NG 575 (604)
Q Consensus 574 ~G 575 (604)
++
T Consensus 303 ~~ 304 (607)
T 3bk7_A 303 GE 304 (607)
T ss_dssp SC
T ss_pred CC
Confidence 64
No 55
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=100.00 E-value=1.8e-34 Score=333.77 Aligned_cols=199 Identities=24% Similarity=0.339 Sum_probs=159.9
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
..+...|++++|++ +++|+|+||++++||+++|+||||||||||+++|+| |+| +|.+... . ..++
T Consensus 434 ~~L~~~~ls~~yg~-~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~----~--~~~~ 498 (986)
T 2iw3_A 434 EDLCNCEFSLAYGA-KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE----E--CRTV 498 (986)
T ss_dssp CEEEEEEEEEEETT-EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT----T--SCEE
T ss_pred ceeEEeeEEEEECC-EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc----c--eeEE
Confidence 46888899999975 579999999999999999999999999999999996 554 5544321 1 2478
Q ss_pred EEcccC-cCC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 438 MVTQDT-SLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 438 ~v~Q~~-~lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
|++|++ .++ ..|+.||+.+..... ++++.++++..++. +........+||||||||++||||
T Consensus 499 ~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~---------------~~~~~~~~~~LSGGqkQRvaLArA 562 (986)
T 2iw3_A 499 YVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFT---------------DEMIAMPISALSGGWKMKLALARA 562 (986)
T ss_dssp ETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCC---------------HHHHHSBGGGCCHHHHHHHHHHHH
T ss_pred EEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCC---------------hhhhcCCcccCCHHHHHHHHHHHH
Confidence 999985 455 459999998621111 44555555554441 112223345899999999999999
Q ss_pred HccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCEEe-EecChhHHhhc
Q psy13349 516 ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVA-EEGSHLDLLKK 589 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv-~~g~~~~l~~~ 589 (604)
|+.+|++|||||||++||+.+.+.+.+.|++ .++|+|+|||+++.+.. ||+|++|++|+++ ..|+++++.+.
T Consensus 563 L~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~~ 636 (986)
T 2iw3_A 563 VLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVKK 636 (986)
T ss_dssp HHTTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHHH
T ss_pred HhcCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHhh
Confidence 9999999999999999999999999999988 58999999999999865 8999999999997 58999998753
No 56
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=100.00 E-value=9.6e-36 Score=330.11 Aligned_cols=196 Identities=22% Similarity=0.311 Sum_probs=151.5
Q ss_pred EEE-EEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE---------EECCEeCCCCCH
Q psy13349 360 IFF-KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI---------LIDGQNISNVSQ 429 (604)
Q Consensus 360 i~~-~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I---------~i~g~~~~~~~~ 429 (604)
.++ +||+++|++...+|+|+| +|++||++||+||||||||||+++|+|+++|++|++ .++|.++.....
T Consensus 21 ~~~~~~ls~~yg~~~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~~ 99 (538)
T 1yqt_A 21 EQLEEDCVHRYGVNAFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFE 99 (538)
T ss_dssp ---CCCEEEECSTTCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHHH
T ss_pred hhHhcCcEEEECCccccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHHH
Confidence 455 689999975435899999 999999999999999999999999999999999996 356654432111
Q ss_pred HH--HhccceEEcccCcCC----cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 430 ES--LREQIGMVTQDTSLL----HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 430 ~~--~r~~i~~v~Q~~~lf----~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.. .+..+++++|+...+ .+|++||+..... .+++.++++.. |++........+||
T Consensus 100 ~~~~~~~~~~~~~q~~~~~~~~~~~~v~e~~~~~~~---~~~~~~~l~~l----------------gl~~~~~~~~~~LS 160 (538)
T 1yqt_A 100 KLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADE---TGKLEEVVKAL----------------ELENVLEREIQHLS 160 (538)
T ss_dssp HHHTTSCCCEEECSCGGGSGGGCCSBHHHHHHHHCS---SSCHHHHHHHT----------------TCTTTTTSBGGGCC
T ss_pred HHHHHhhhhhhhhhhhhhcchhhhccHHHHHhhhhH---HHHHHHHHHHc----------------CCChhhhCChhhCC
Confidence 11 124688999975443 3589998853211 12233333332 44444445566899
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNG 575 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G 575 (604)
||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++|
T Consensus 161 gGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 161 GGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 999999999999999999999999999999999999999998875 48999999999998865 8999999864
No 57
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=1.7e-35 Score=337.71 Aligned_cols=210 Identities=25% Similarity=0.329 Sum_probs=139.4
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHH---------------------HHHhcCCCCCc-------cEEEECCEeC
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTIN---------------------NLLLRFYDIKY-------GEILIDGQNI 424 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~---------------------~ll~~~~~~~~-------G~I~i~g~~~ 424 (604)
.++|+||||+|++||++||+||||||||||+ +++.|+..|+. |.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4699999999999999999999999999998 89999999984 5555666543
Q ss_pred CCCCHHHHhccceEEcccCcCC--------------------cccHHHHHhcCCC-CCCH--HHHHHHHHHchHHHHHHH
Q psy13349 425 SNVSQESLREQIGMVTQDTSLL--------------------HRSIRDNILYGRP-DASE--CELFNAAKCAEADIFIKS 481 (604)
Q Consensus 425 ~~~~~~~~r~~i~~v~Q~~~lf--------------------~~ti~eNi~~g~~-~~~~--~~i~~a~~~~~~~~~i~~ 481 (604)
.. ..++.+++|+|.+.++ ..|++||+.+... ...+ .+..+.. ...+.+.+.-
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 185 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLI-LREIRDRLGF 185 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC---------------------------CHHHHHH
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHH-HHHHHHHHHH
Confidence 32 2345677777765432 3489999987531 1111 1111000 0000111111
Q ss_pred hhhhhhcCCCccc-cccCCCCCChhHHHHHHHHHHHccCCC--eEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEc
Q psy13349 482 LTDEHGRKGYDAH-VGEHGIKLSGGQRQRIAIARVILKNAP--ILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIA 557 (604)
Q Consensus 482 lp~~~~~~g~~t~-v~e~g~~LSgGq~QrialARall~~p~--ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~it 557 (604)
+ ...|++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +++|+|+||
T Consensus 186 l----~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 186 L----QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp H----HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred H----HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 1 11255443 345567899999999999999999998 999999999999999999999998875 589999999
Q ss_pred cChhHHhhcCeEEEE------eCCEEeEecChhHHhhcCc
Q psy13349 558 HRLSTISAMDRLIVL------DNGCVAEEGSHLDLLKKNG 591 (604)
Q Consensus 558 H~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~~~ 591 (604)
|+++.+..||+|++| ++|++++.|+++++.+...
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~ 301 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPN 301 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhcCch
Confidence 999999889999999 8999999999999987654
No 58
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=100.00 E-value=2e-35 Score=337.13 Aligned_cols=205 Identities=23% Similarity=0.334 Sum_probs=149.9
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh----------------------cCCCCCccEEEECCEeCCCCCHH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL----------------------RFYDIKYGEILIDGQNISNVSQE 430 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~----------------------~~~~~~~G~I~i~g~~~~~~~~~ 430 (604)
.++|+||||+|++||++||+||||||||||+++++ |+. +.+|.|.++|.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~-~~~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLE-HLDKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGG-GCSEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccc-ccCceeEeccccCCCCCCc
Confidence 46899999999999999999999999999998754 333 3457899999887654321
Q ss_pred HHhc-----------------------------------------cceEEcccCcCC-----------------------
Q psy13349 431 SLRE-----------------------------------------QIGMVTQDTSLL----------------------- 446 (604)
Q Consensus 431 ~~r~-----------------------------------------~i~~v~Q~~~lf----------------------- 446 (604)
..+. ..++++|+..++
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 1111 112333322221
Q ss_pred ----------cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHHHHHHH
Q psy13349 447 ----------HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 447 ----------~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~QrialARa 515 (604)
..|++||+.+.... .+...+ .+.+..+ |+.. ..++...+||||||||++||||
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~~---~~~~~~------~~~l~~~-------~l~~~~~~~~~~~LSgG~~qrv~iAra 557 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFASI---PKIKRK------LETLYDV-------GLGYMKLGQPATTLSGGEAQRVKLAAE 557 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTTC---HHHHHH------HHHHHHT-------TCTTSBTTCCGGGCCHHHHHHHHHHHH
T ss_pred ecCCCHHHHhhCCHHHHHHHHHHh---hhHHHH------HHHHHHc-------CCchhhccCCchhCCHHHHHHHHHHHH
Confidence 34777777765321 111111 1112222 4432 3466778999999999999999
Q ss_pred HccCC---CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEE------eCCEEeEecChhH
Q psy13349 516 ILKNA---PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVL------DNGCVAEEGSHLD 585 (604)
Q Consensus 516 ll~~p---~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~ 585 (604)
|+.+| ++|||||||++||+.+...+++.|+++. +++|+|+|||+++.++.||||++| ++|+|+++|+++|
T Consensus 558 L~~~p~~p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~~~~d~i~~l~~~~g~~~G~i~~~g~~~~ 637 (670)
T 3ux8_A 558 LHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPEE 637 (670)
T ss_dssp HHSCCCSCEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEECHHH
T ss_pred HhhCCCCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHhCCEEEEecCCcCCCCCEEEEecCHHH
Confidence 99887 4999999999999999999999998875 589999999999999899999999 8999999999999
Q ss_pred HhhcCcHHH
Q psy13349 586 LLKKNGLYS 594 (604)
Q Consensus 586 l~~~~~~y~ 594 (604)
+.+....|.
T Consensus 638 ~~~~~~~~~ 646 (670)
T 3ux8_A 638 VAEVKESHT 646 (670)
T ss_dssp HHTCTTCHH
T ss_pred HHhCCccHH
Confidence 987654443
No 59
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=100.00 E-value=5.7e-34 Score=329.46 Aligned_cols=208 Identities=27% Similarity=0.391 Sum_probs=152.9
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHH---------HHHhcCCCCC------cc------EEEECCEeCCCCCH---
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTIN---------NLLLRFYDIK------YG------EILIDGQNISNVSQ--- 429 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~---------~ll~~~~~~~------~G------~I~i~g~~~~~~~~--- 429 (604)
..|+||||+|++|++++|+|+||||||||+ +++.+...+. +| .+.++..++.....
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4454444333 33 35555555432211
Q ss_pred -------HHHh-------------------------------ccceEEcccCcCCcc-----------------------
Q psy13349 430 -------ESLR-------------------------------EQIGMVTQDTSLLHR----------------------- 448 (604)
Q Consensus 430 -------~~~r-------------------------------~~i~~v~Q~~~lf~~----------------------- 448 (604)
+..| +..|+++|+..++++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0111 235677777665543
Q ss_pred ----------cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhHHHHHHHHHHHc
Q psy13349 449 ----------SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 449 ----------ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq~QrialARall 517 (604)
|+.|++.+.......++. .+.+.. .|+.. .+|+.+.+||||||||++|||||+
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~---------~~~L~~-------vGL~~~~lgq~~~~LSGGErQRV~LAraL~ 821 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRT---------LQVLHD-------VGLGYVKLGQPATTLSGGEAQRIKLASELR 821 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHH---------HHHHHH-------TTGGGSBTTCCSTTCCHHHHHHHHHHHHHT
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHH---------HHHHHH-------cCCchhhccCCccCCCHHHHHHHHHHHHHh
Confidence 344444433211001111 111222 25543 468889999999999999999999
Q ss_pred cCC---CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEE------eCCEEeEecChhHHh
Q psy13349 518 KNA---PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVL------DNGCVAEEGSHLDLL 587 (604)
Q Consensus 518 ~~p---~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~ 587 (604)
++| ++|||||||++||+.+++.+++.|+++. +++|+|+|||+++.++.||+|++| ++|+|+++|+|+|+.
T Consensus 822 ~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~ 901 (916)
T 3pih_A 822 KRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIA 901 (916)
T ss_dssp SCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHH
T ss_pred hCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHH
Confidence 876 6999999999999999999999998875 589999999999999999999999 899999999999999
Q ss_pred hcCcHHHHHH
Q psy13349 588 KKNGLYSRLW 597 (604)
Q Consensus 588 ~~~~~y~~l~ 597 (604)
+..+.|..-|
T Consensus 902 ~~~~syt~~~ 911 (916)
T 3pih_A 902 KNPHSYTGRF 911 (916)
T ss_dssp SCTTCHHHHH
T ss_pred hCCchHHHHH
Confidence 9877776554
No 60
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.9e-33 Score=314.36 Aligned_cols=196 Identities=24% Similarity=0.354 Sum_probs=144.1
Q ss_pred EEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-----------EECCEeCCCCCHHHH
Q psy13349 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI-----------LIDGQNISNVSQESL 432 (604)
Q Consensus 364 ~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I-----------~i~g~~~~~~~~~~~ 432 (604)
|++++|+++...|++++ ++++||++||+||||||||||+|+|+|+++|++|+| .++|.++..+....+
T Consensus 82 ~~~~~Y~~~~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (608)
T 3j16_B 82 HVTHRYSANSFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQEIIKYFRGSELQNYFTKML 160 (608)
T ss_dssp TEEEECSTTSCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHHHHHHHTTTSTHHHHHHHHH
T ss_pred CeEEEECCCceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchhhhhheecChhhhhhhhHHH
Confidence 46888976556788877 689999999999999999999999999999999998 333433322222222
Q ss_pred hccce--EEcccCcC----Cc---ccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 433 REQIG--MVTQDTSL----LH---RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 433 r~~i~--~v~Q~~~l----f~---~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.+.+. +.+|.... +. .++.+++.... ...++++.++++ .+ |++........+||
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~-~~~~~~~~~~l~---------~~-------gl~~~~~~~~~~LS 223 (608)
T 3j16_B 161 EDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRM-EKSPEDVKRYIK---------IL-------QLENVLKRDIEKLS 223 (608)
T ss_dssp HTSCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHC-CSCHHHHHHHHH---------HH-------TCTGGGGSCTTTCC
T ss_pred HHhhhhhhchhhhhhhhhhhcchhhHHHHHHhhhh-hhHHHHHHHHHH---------Hc-------CCcchhCCChHHCC
Confidence 23332 23332211 11 14555554322 112233333322 22 66666667778999
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh-cCeEEEEeCCEE
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA-MDRLIVLDNGCV 577 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~-~d~i~vl~~G~i 577 (604)
||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|..
T Consensus 224 gGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~drv~vl~~~~~ 299 (608)
T 3j16_B 224 GGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPS 299 (608)
T ss_dssp HHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHCSEEEEEESCTT
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcc
Confidence 999999999999999999999999999999999999999999876 47999999999998876 899999987653
No 61
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.1e-33 Score=313.04 Aligned_cols=192 Identities=21% Similarity=0.324 Sum_probs=146.4
Q ss_pred EEEEEeCCCCceeeecceEE-eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-----------EECCEeCCCCCHHH
Q psy13349 364 NVSFSYDQKHLIINNLSLTI-QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI-----------LIDGQNISNVSQES 431 (604)
Q Consensus 364 ~vsf~y~~~~~~l~~isl~i-~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I-----------~i~g~~~~~~~~~~ 431 (604)
+++.+|+.+. ++-..|.+ ++||++||+||||||||||+|+|+|++.|++|+| .++|.++..+....
T Consensus 4 ~~~~~~~~~~--f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~~~ 81 (538)
T 3ozx_A 4 EVIHRYKVNG--FKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFKEL 81 (538)
T ss_dssp CEEEESSTTS--CEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHHHH
T ss_pred CCceecCCCc--eeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHHHH
Confidence 4677887543 34444544 5899999999999999999999999999999998 57776654321111
Q ss_pred ------HhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 432 ------LREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 432 ------~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
....+.+++|.+.++.+|+++++..... .++..++++.. |++........+||||
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~---~~~~~~~l~~l----------------~l~~~~~~~~~~LSgG 142 (538)
T 3ozx_A 82 YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDE---RGKKDEVKELL----------------NMTNLWNKDANILSGG 142 (538)
T ss_dssp HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHCC---SSCHHHHHHHT----------------TCGGGTTSBGGGCCHH
T ss_pred hhcccchhhccchhhhhhhhccCcHHHHhhcchh---HHHHHHHHHHc----------------CCchhhcCChhhCCHH
Confidence 1223555666666778899988753221 12233333333 3333344455689999
Q ss_pred HHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhh-cCeEEEEeCCE
Q psy13349 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGC 576 (604)
Q Consensus 506 q~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~-~d~i~vl~~G~ 576 (604)
||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|.
T Consensus 143 e~Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 143 GLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 999999999999999999999999999999999999999988778999999999998765 89999998754
No 62
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.98 E-value=1.4e-32 Score=315.28 Aligned_cols=219 Identities=23% Similarity=0.359 Sum_probs=160.0
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHH-HhcCC-------CC-----------------
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNL-LLRFY-------DI----------------- 412 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~l-l~~~~-------~~----------------- 412 (604)
..++++|+++ .+|+||||+|++||++||+|+||||||||++. |+|+. .|
T Consensus 501 ~~L~v~~l~~------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~~~ 574 (842)
T 2vf7_A 501 GWLELNGVTR------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAGSA 574 (842)
T ss_dssp CEEEEEEEEE------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------CCC
T ss_pred ceEEEEeeee------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccccc
Confidence 3599999986 26999999999999999999999999999996 66543 22
Q ss_pred -Ccc-------EEEECCEeCCCCCH----------HHHhccceEEcc---------c----------------------C
Q psy13349 413 -KYG-------EILIDGQNISNVSQ----------ESLREQIGMVTQ---------D----------------------T 443 (604)
Q Consensus 413 -~~G-------~I~i~g~~~~~~~~----------~~~r~~i~~v~Q---------~----------------------~ 443 (604)
.+| .|.++|.++...+. +.+|+.++++|+ . -
T Consensus 575 ~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~~~ 654 (842)
T 2vf7_A 575 RLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMVEL 654 (842)
T ss_dssp EEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEETT
T ss_pred cccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccchhh
Confidence 356 68899988764322 334433333322 1 0
Q ss_pred cC------------------------Cc-ccHHHHHhcCCCCCCHHHHHHHH----HHchHHHHHHHhhhhhhcCCCcc-
Q psy13349 444 SL------------------------LH-RSIRDNILYGRPDASECELFNAA----KCAEADIFIKSLTDEHGRKGYDA- 493 (604)
Q Consensus 444 ~l------------------------f~-~ti~eNi~~g~~~~~~~~i~~a~----~~~~~~~~i~~lp~~~~~~g~~t- 493 (604)
.+ +. .||.||+.+.. ++..... +.....+.++.+ |+..
T Consensus 655 ~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv-----~e~l~~~~~~~~~~~~~~~L~~~-------gL~~~ 722 (842)
T 2vf7_A 655 LFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTV-----DEAHDFFADESAIFRALDTLREV-------GLGYL 722 (842)
T ss_dssp CSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBH-----HHHHHHTTTSHHHHHHHHHHHHT-------TCTTS
T ss_pred hcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccH-----HHHHHHhhcchHHHHHHHHHHHc-------CCCcc
Confidence 11 11 25666654321 1110000 000112223322 6665
Q ss_pred ccccCCCCCChhHHHHHHHHHHHccC---CCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeE
Q psy13349 494 HVGEHGIKLSGGQRQRIAIARVILKN---APILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRL 569 (604)
Q Consensus 494 ~v~e~g~~LSgGq~QrialARall~~---p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i 569 (604)
.+++...+||||||||++|||+|+++ |++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|
T Consensus 723 ~l~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDri 802 (842)
T 2vf7_A 723 RLGQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWV 802 (842)
T ss_dssp BTTCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEE
T ss_pred cccCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEE
Confidence 46788889999999999999999996 69999999999999999999999998875 689999999999999889999
Q ss_pred EEE------eCCEEeEecChhHHhhcCcHHH
Q psy13349 570 IVL------DNGCVAEEGSHLDLLKKNGLYS 594 (604)
Q Consensus 570 ~vl------~~G~iv~~g~~~~l~~~~~~y~ 594 (604)
++| ++|+|++.|+++++.+....|.
T Consensus 803 i~L~p~~g~~~G~Iv~~g~~~el~~~~~~~t 833 (842)
T 2vf7_A 803 LDIGPGAGEDGGRLVAQGTPAEVAQAAGSVT 833 (842)
T ss_dssp EEECSSSGGGCCSEEEEECHHHHTTCTTCSS
T ss_pred EEECCCCCCCCCEEEEEcCHHHHHhCchhHH
Confidence 999 6999999999999987654443
No 63
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=99.97 E-value=1.2e-31 Score=289.11 Aligned_cols=206 Identities=19% Similarity=0.255 Sum_probs=151.4
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC--------------------------------------CCcc
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD--------------------------------------IKYG 415 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~--------------------------------------~~~G 415 (604)
.+++++||++++| +++|+||||||||||+++|.++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 4789999999999 999999999999999999976664 4578
Q ss_pred EEEECCEeCCCCCHHHHhcc-ceEEcccCcCCcccHHHHHhcCCCCCCH-------------------------------
Q psy13349 416 EILIDGQNISNVSQESLREQ-IGMVTQDTSLLHRSIRDNILYGRPDASE------------------------------- 463 (604)
Q Consensus 416 ~I~i~g~~~~~~~~~~~r~~-i~~v~Q~~~lf~~ti~eNi~~g~~~~~~------------------------------- 463 (604)
++++||.+++..+..++.+. +++++|++.++..+..++..+-+.....
T Consensus 128 ~i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~ 207 (415)
T 4aby_A 128 AARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHP 207 (415)
T ss_dssp EEEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred EEEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcC
Confidence 99999999876666666666 8999999988766655554442221110
Q ss_pred -------------HHHHHHH------HHch---HHHHHHHhhhhhh-----------------cCCCcc---ccccCCCC
Q psy13349 464 -------------CELFNAA------KCAE---ADIFIKSLTDEHG-----------------RKGYDA---HVGEHGIK 501 (604)
Q Consensus 464 -------------~~i~~a~------~~~~---~~~~i~~lp~~~~-----------------~~g~~t---~v~e~g~~ 501 (604)
+++.+.+ +... +...+.+.....+ ..|++. .++.++..
T Consensus 208 ~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 287 (415)
T 4aby_A 208 TSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGE 287 (415)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCC
Confidence 0000000 0000 0111111111000 012222 23344433
Q ss_pred --------CChhHHHHHHHHHHHccCC--CeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEE
Q psy13349 502 --------LSGGQRQRIAIARVILKNA--PILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIV 571 (604)
Q Consensus 502 --------LSgGq~QrialARall~~p--~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~v 571 (604)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++
T Consensus 288 ~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~ 367 (415)
T 4aby_A 288 ELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYK 367 (415)
T ss_dssp CCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEE
T ss_pred cccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEE
Confidence 8999999999999999999 999999999999999999999999998778999999999999989999999
Q ss_pred E----eCCEEeEe
Q psy13349 572 L----DNGCVAEE 580 (604)
Q Consensus 572 l----~~G~iv~~ 580 (604)
| ++|+++..
T Consensus 368 l~k~~~~G~~~~~ 380 (415)
T 4aby_A 368 VEKQVEDGRTVSH 380 (415)
T ss_dssp EEEEEETTEEEEE
T ss_pred EEEeccCCceEEE
Confidence 9 99998765
No 64
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.97 E-value=1.8e-31 Score=306.33 Aligned_cols=216 Identities=24% Similarity=0.321 Sum_probs=158.6
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh-cC----C---CCCcc-------------EE
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL-RF----Y---DIKYG-------------EI 417 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~-~~----~---~~~~G-------------~I 417 (604)
.++++|++. .+|+||||+|++||++||+|+||||||||+++++ |. + .+..| .|
T Consensus 629 ~L~v~~l~~------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~I 702 (972)
T 2r6f_A 629 WLEVVGARE------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDKVI 702 (972)
T ss_dssp EEEEEEECS------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSEEE
T ss_pred EEEEecCcc------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccceEE
Confidence 588888852 3699999999999999999999999999999854 21 1 12233 47
Q ss_pred EECCEeCCCCC---HH-------HHh---------ccceEEcccCcC---------------------C-----------
Q psy13349 418 LIDGQNISNVS---QE-------SLR---------EQIGMVTQDTSL---------------------L----------- 446 (604)
Q Consensus 418 ~i~g~~~~~~~---~~-------~~r---------~~i~~v~Q~~~l---------------------f----------- 446 (604)
.+||.++...+ +. ..| +..+|++|...+ |
T Consensus 703 ~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce~c 782 (972)
T 2r6f_A 703 DIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVC 782 (972)
T ss_dssp EECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECTTT
T ss_pred EEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccccc
Confidence 88888875321 11 111 246788875321 1
Q ss_pred -----------------------cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCC
Q psy13349 447 -----------------------HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKL 502 (604)
Q Consensus 447 -----------------------~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~L 502 (604)
..|+.||+.+... . .++. ...+.+.. .|+.. ..+....+|
T Consensus 783 ~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~-~--~~~~------~~~~~L~~-------~gL~~~~l~~~~~~L 846 (972)
T 2r6f_A 783 HGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFAS-I--PKIK------RKLETLYD-------VGLGYMKLGQPATTL 846 (972)
T ss_dssp TTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCS-C--HHHH------HHHHHHHH-------TTCSSSBTTCCGGGC
T ss_pred ccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhc-c--hhHH------HHHHHHHH-------cCCCcccccCchhhC
Confidence 1133444433211 0 0110 01122222 27766 678888899
Q ss_pred ChhHHHHHHHHHHHccCC---CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEE------
Q psy13349 503 SGGQRQRIAIARVILKNA---PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVL------ 572 (604)
Q Consensus 503 SgGq~QrialARall~~p---~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl------ 572 (604)
|||||||++|||||+++| ++|||||||++||+.+.+.+++.|+++. +++|+|+|||+++.++.||+|++|
T Consensus 847 SGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~ 926 (972)
T 2r6f_A 847 SGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGD 926 (972)
T ss_dssp CHHHHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTT
T ss_pred CHHHHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCC
Confidence 999999999999999875 9999999999999999999999998875 589999999999999889999999
Q ss_pred eCCEEeEecChhHHhhcCcHHHHH
Q psy13349 573 DNGCVAEEGSHLDLLKKNGLYSRL 596 (604)
Q Consensus 573 ~~G~iv~~g~~~~l~~~~~~y~~l 596 (604)
++|+|++.|+++++.+....|...
T Consensus 927 ~~G~Iv~~g~~~el~~~~~~~t~~ 950 (972)
T 2r6f_A 927 RGGQIVAVGTPEEVAEVKESHTGR 950 (972)
T ss_dssp SCCSEEEEESHHHHHTCTTCHHHH
T ss_pred CCCEEEEecCHHHHHhCchhHHHH
Confidence 789999999999998765545443
No 65
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=99.97 E-value=6.6e-35 Score=316.54 Aligned_cols=190 Identities=12% Similarity=0.095 Sum_probs=150.8
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-E-EEECCEeCCCCCHHHHhccce
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG-E-ILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~-I~i~g~~~~~~~~~~~r~~i~ 437 (604)
++++||+|+| .++||++++|++++|+||||||||||+++|+|++.|++| + |++|| + .++.++
T Consensus 119 i~~~nl~~~y-------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~i~ 182 (460)
T 2npi_A 119 KYIYNLHFML-------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQPIF 182 (460)
T ss_dssp HHHHHHHHHH-------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSCSS
T ss_pred hhhhhhhehh-------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCCee
Confidence 4455555544 379999999999999999999999999999999999999 9 99998 1 367899
Q ss_pred EEcccCcCCc----ccHHHHHhcCCCC---C-CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 438 MVTQDTSLLH----RSIRDNILYGRPD---A-SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 438 ~v~Q~~~lf~----~ti~eNi~~g~~~---~-~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
++||++.+|. .|++||+ ++... . .++++.. .....|++.... ..+||||||||
T Consensus 183 ~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~~~~~~~~----------------ll~~~gl~~~~~--~~~LSgGq~qr 243 (460)
T 2npi_A 183 TVPGCISATPISDILDAQLPT-WGQSLTSGATLLHNKQP----------------MVKNFGLERINE--NKDLYLECISQ 243 (460)
T ss_dssp SCSSCCEEEECCSCCCTTCTT-CSCBCBSSCCSSCCBCC----------------EECCCCSSSGGG--CHHHHHHHHHH
T ss_pred eeccchhhcccccccchhhhh-cccccccCcchHHHHHH----------------HHHHhCCCcccc--hhhhhHHHHHH
Confidence 9999986543 4899999 75321 1 0111111 112236666543 67999999999
Q ss_pred HHHHHH--HccCCCe----EEEec-cCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChh------HH-hhcCe-----EE
Q psy13349 510 IAIARV--ILKNAPI----LLLDE-ATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS------TI-SAMDR-----LI 570 (604)
Q Consensus 510 ialARa--ll~~p~i----lilDE-~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~------~~-~~~d~-----i~ 570 (604)
++|||| |+.+|++ +|||| ||++||+. .+.+.+.+++. ++|+|+|||+.+ .+ +.||+ |+
T Consensus 244 lalAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi 320 (460)
T 2npi_A 244 LGQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIF 320 (460)
T ss_dssp HHHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEE
T ss_pred HHHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEE
Confidence 999999 9999999 99999 99999999 66666666654 679999999987 44 45899 99
Q ss_pred EEe-CCEEeEecChhHHhh
Q psy13349 571 VLD-NGCVAEEGSHLDLLK 588 (604)
Q Consensus 571 vl~-~G~iv~~g~~~~l~~ 588 (604)
+|+ +|+++ .|+++++.+
T Consensus 321 ~l~k~G~iv-~g~~~~~~~ 338 (460)
T 2npi_A 321 FIPKLDGVS-AVDDVYKRS 338 (460)
T ss_dssp EECCCTTCC-CCCHHHHHH
T ss_pred EEeCCCcEE-ECCHHHHhh
Confidence 999 99999 999988854
No 66
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.97 E-value=3.8e-31 Score=304.78 Aligned_cols=218 Identities=23% Similarity=0.351 Sum_probs=157.2
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh-----cCCC---CCccE-------------
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL-----RFYD---IKYGE------------- 416 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~-----~~~~---~~~G~------------- 416 (604)
..++++|++. .+|+||||+|++||++||+|+||||||||+++++ +.+. +..|.
T Consensus 646 ~~L~v~~l~~------~~Lk~Vsl~I~~GeivaI~G~nGSGKSTLl~~il~g~l~~~l~~~~~~~G~~~~i~G~~~~~~~ 719 (993)
T 2ygr_A 646 RQLTVVGARE------HNLRGIDVSFPLGVLTSVTGVSGSGKSTLVNDILAAVLANRLNGARQVPGRHTRVTGLDYLDKL 719 (993)
T ss_dssp SEEEEEEECS------TTCCSEEEEEESSSEEEEECSTTSSHHHHHTTTHHHHHHHHTTCCCCCCCSEEEECCCTTCSEE
T ss_pred ceEEEecCcc------ccccCceEEECCCCEEEEEcCCCCCHHHHHHHHHHHHHHhhhcCCcCCCCceeeecCccccceE
Confidence 3589999852 3699999999999999999999999999999853 2222 23343
Q ss_pred EEECCEeCCCC---CHH-------HHh---------ccceEEcccCcC---------------------C----------
Q psy13349 417 ILIDGQNISNV---SQE-------SLR---------EQIGMVTQDTSL---------------------L---------- 446 (604)
Q Consensus 417 I~i~g~~~~~~---~~~-------~~r---------~~i~~v~Q~~~l---------------------f---------- 446 (604)
|.+|+.++... ++. ..| +..+|++|...+ |
T Consensus 720 i~idq~pig~~~rs~paty~~~~d~ir~lfa~~p~ar~~gy~~~~fsfn~~~grC~~C~g~G~~~~e~~fl~~v~~~ce~ 799 (993)
T 2ygr_A 720 VRIDQSPIGRTPRSNPATYTGVFDKIRTLFAATNEAKVRGYKPGRFSFNVKGGRCEACTGDGTIKIEMNFLPDVYVPCEV 799 (993)
T ss_dssp ECCCCSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHTTTCCTTTTCTTSTTTBCTTTTSSSEEEECCTTSCCEEEECTT
T ss_pred EEecCcccccCcccchhhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeehhhccccceeeehh
Confidence 55666665321 111 112 345777775321 0
Q ss_pred ---------------c-ccH--------HHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCC
Q psy13349 447 ---------------H-RSI--------RDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIK 501 (604)
Q Consensus 447 ---------------~-~ti--------~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~ 501 (604)
. .++ .||+.+... . .++. ...+.+.. .|+.. ..++...+
T Consensus 800 c~G~r~~~e~l~v~~~g~si~dvl~ltv~e~l~~~~~-~--~~~~------~~~~~L~~-------lgL~~~~l~~~~~~ 863 (993)
T 2ygr_A 800 CQGARYNRETLEVHYKGKTVSEVLDMSIEEAAEFFEP-I--AGVH------RYLRTLVD-------VGLGYVRLGQPAPT 863 (993)
T ss_dssp TTTCSBCGGGGGCCBTTBCHHHHHSSBHHHHHHHSTT-C--HHHH------HHHHHHHH-------TTGGGSBTTCCGGG
T ss_pred ccccccchhhhhhhccCCCHHHHhhccHHHHHHHhhc-c--hHHH------HHHHHHHH-------cCCCcccccCcccc
Confidence 0 123 333333211 0 0000 01122222 26766 67788889
Q ss_pred CChhHHHHHHHHHHHccCC---CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEE-----
Q psy13349 502 LSGGQRQRIAIARVILKNA---PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVL----- 572 (604)
Q Consensus 502 LSgGq~QrialARall~~p---~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl----- 572 (604)
||||||||++|||||+++| ++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.++.||+|++|
T Consensus 864 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gg 943 (993)
T 2ygr_A 864 LSGGEAQRVKLASELQKRSTGRTVYILDEPTTGLHFDDIRKLLNVINGLVDKGNTVIVIEHNLDVIKTSDWIIDLGPEGG 943 (993)
T ss_dssp SCHHHHHHHHHHHHHSSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSST
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCcC
Confidence 9999999999999999875 9999999999999999999999998875 589999999999999889999999
Q ss_pred -eCCEEeEecChhHHhhcCcHHHHHH
Q psy13349 573 -DNGCVAEEGSHLDLLKKNGLYSRLW 597 (604)
Q Consensus 573 -~~G~iv~~g~~~~l~~~~~~y~~l~ 597 (604)
++|++++.|+++++.+....|...|
T Consensus 944 ~~~G~Iv~~G~~~el~~~~~~~t~~~ 969 (993)
T 2ygr_A 944 AGGGTVVAQGTPEDVAAVPASYTGKF 969 (993)
T ss_dssp TSCSEEEEEECHHHHHHCTTCHHHHH
T ss_pred CCCCEEEEecCHHHHHhCCHHHHHHH
Confidence 6899999999999988665555444
No 67
>1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12
Probab=99.95 E-value=1.7e-28 Score=255.69 Aligned_cols=209 Identities=20% Similarity=0.279 Sum_probs=149.0
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC----------------------------
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY---------------------------- 410 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~---------------------------- 410 (604)
.++++|. .+|. +++++++.+| +++|+||||||||||+++|..+.
T Consensus 5 ~L~i~nf-r~~~------~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~ 76 (322)
T 1e69_A 5 KLYLKGF-KSFG------RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAG 76 (322)
T ss_dssp EEEEESB-TTBC------SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCS
T ss_pred EEEEeCc-eeec------CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCc
Confidence 4667762 2342 2578888899 99999999999999999998443
Q ss_pred ----------------------CCCccEEEECCEeCCCCCHHHHhccceEEcccCcCC-cccHHHHHhcCCCCCC-----
Q psy13349 411 ----------------------DIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDAS----- 462 (604)
Q Consensus 411 ----------------------~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~g~~~~~----- 462 (604)
.+.+|++++||.+++..+...+...+++.||+..++ .+++.+|+... |..-
T Consensus 77 ~~~v~~~f~~~~~~~~i~r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~-p~~rr~~ld 155 (322)
T 1e69_A 77 SAYVELVFEENGEEITVARELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNAS-PEELRLESS 155 (322)
T ss_dssp EEEEEEEEESSSCEEEEEEEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC-----------
T ss_pred eEEEEEEEEeCCeEEEEEEEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhcc-HHHHHHHHH
Confidence 334578999999875545566677899999988765 88999998763 3210
Q ss_pred -----------HHHHHHHHHHchHHHHH------------------HHhhhhhhcCCCccccc------cCCCCCChhHH
Q psy13349 463 -----------ECELFNAAKCAEADIFI------------------KSLTDEHGRKGYDAHVG------EHGIKLSGGQR 507 (604)
Q Consensus 463 -----------~~~i~~a~~~~~~~~~i------------------~~lp~~~~~~g~~t~v~------e~g~~LSgGq~ 507 (604)
.+++.+. ..+++ ..++. |+++.++ .....||||||
T Consensus 156 ~~~~~~~~~~~y~rv~e~-----~~~~~~~~~~~~~~~~~~~~~~~~~l~~-----g~~~~~~~~~~~~~~~~~lS~Gq~ 225 (322)
T 1e69_A 156 KHPTSLVPRGSYQRVNES-----FNRFISLLFFGGEGRLNIVSEAKSILDA-----GFEISIRKPGRRDQKLSLLSGGEK 225 (322)
T ss_dssp -----------CHHHHHH-----HHHHHHHHHTSCEEEC-------------------CCEEECTTSCCCBGGGSCHHHH
T ss_pred HhhhhHHHHHHHHHHHHH-----HHHHHHHhcCCceEEEEeeccccccccC-----CeEEEEecCccccCchhhCCHHHH
Confidence 0111111 11111 11222 5655433 23468999999
Q ss_pred HHHHHHHHHc----cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeE--EEEeCCEE-eEe
Q psy13349 508 QRIAIARVIL----KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRL--IVLDNGCV-AEE 580 (604)
Q Consensus 508 QrialARall----~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i--~vl~~G~i-v~~ 580 (604)
||++|||||. ++|+++||||||++||+.+.+.+.+.+++..+++|+|+|||+.+..+.||++ ++|++|+. +..
T Consensus 226 q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~ 305 (322)
T 1e69_A 226 ALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVP 305 (322)
T ss_dssp HHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEE
T ss_pred HHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEE
Confidence 9999999996 7899999999999999999999999998887788999999999888889987 88888864 344
Q ss_pred cChhHH
Q psy13349 581 GSHLDL 586 (604)
Q Consensus 581 g~~~~l 586 (604)
.+.+|.
T Consensus 306 ~~~~~~ 311 (322)
T 1e69_A 306 VEVEKI 311 (322)
T ss_dssp CCC---
T ss_pred EEcchh
Confidence 444443
No 68
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=99.94 E-value=6.3e-30 Score=249.44 Aligned_cols=159 Identities=14% Similarity=0.183 Sum_probs=102.5
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRD 452 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 452 (604)
+++|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...+++.++||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689986 89999999999999999999999999 99999994 333321 2234578899999997 67
Q ss_pred HH-hcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCC
Q psy13349 453 NI-LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531 (604)
Q Consensus 453 Ni-~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~ 531 (604)
|+ .++.+. .+.+........+.+.++. | + |||||++|||||+.+|++||||||||+
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~--------g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~ 134 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA--------G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT 134 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT--------T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh--------C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc
Confidence 76 443110 0000000000111111110 1 1 999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEE
Q psy13349 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCV 577 (604)
Q Consensus 532 LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~i 577 (604)
++..+.+.|+++.+++|+| |||+++.++ ++...++|..
T Consensus 135 ----~~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 135 ----TPAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp ----CHHHHHHHHTTBCTTCEEE-EEEC---------------CCH
T ss_pred ----cHHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcHH
Confidence 8888999988774578999 999998654 4455667754
No 69
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=99.94 E-value=1.8e-26 Score=244.33 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=76.4
Q ss_pred cCCCCCChhHHHHHHHHHHHc------cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeE
Q psy13349 497 EHGIKLSGGQRQRIAIARVIL------KNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRL 569 (604)
Q Consensus 497 e~g~~LSgGq~QrialARall------~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i 569 (604)
....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.++++. .++|+|+|||+++..+.||+|
T Consensus 275 ~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~ 354 (365)
T 3qf7_A 275 RPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRK 354 (365)
T ss_dssp EEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCE
T ss_pred CCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEE
Confidence 345689999999999999999 7999999999999999999999999998875 579999999999998889999
Q ss_pred EEEeCCEEeE
Q psy13349 570 IVLDNGCVAE 579 (604)
Q Consensus 570 ~vl~~G~iv~ 579 (604)
++|++|++++
T Consensus 355 ~~l~~G~i~~ 364 (365)
T 3qf7_A 355 LRITGGVVVN 364 (365)
T ss_dssp EEEETTEEC-
T ss_pred EEEECCEEEe
Confidence 9999999975
No 70
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=99.93 E-value=1.4e-27 Score=225.98 Aligned_cols=150 Identities=19% Similarity=0.193 Sum_probs=108.3
Q ss_pred ecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCc--CCcccHHHHHh
Q psy13349 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTS--LLHRSIRDNIL 455 (604)
Q Consensus 378 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~--lf~~ti~eNi~ 455 (604)
||||++++||+++|+||||||||||++++.+ |...+ +.+.++ ++++|++. .+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22112 223333 66777752 12222222211
Q ss_pred cCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHH
Q psy13349 456 YGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535 (604)
Q Consensus 456 ~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~ 535 (604)
.. ....+.. |+.+.+... ...|||||||++||||+..+|++++|||||++||+.
T Consensus 64 ------------~~--------~~~~~~~-----g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~ 117 (171)
T 4gp7_A 64 ------------YI--------VSKRLQL-----GKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQER 117 (171)
T ss_dssp ------------HH--------HHHHHHT-----TCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHH
T ss_pred ------------HH--------HHHHHhC-----CCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHH
Confidence 00 0111222 776666544 456999999999999999999999999999999999
Q ss_pred HH----------------HHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEE
Q psy13349 536 AE----------------IAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLI 570 (604)
Q Consensus 536 ~~----------------~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~ 570 (604)
++ ..+.+.++++. ++.|+|+|||+++.+..++++.
T Consensus 118 ~~~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~~ 169 (171)
T 4gp7_A 118 NKNRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFER 169 (171)
T ss_dssp HHTCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEEE
T ss_pred HhcccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhcc
Confidence 44 77777776553 4899999999999998887753
No 71
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=99.93 E-value=2.6e-29 Score=247.32 Aligned_cols=166 Identities=16% Similarity=0.160 Sum_probs=116.9
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH-HHHhccceEEcccCcCCcc----
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIGMVTQDTSLLHR---- 448 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~-~~~r~~i~~v~Q~~~lf~~---- 448 (604)
.-|+||||++++|++++|+||||||||||+++|+|++ | |+|.+ |.++...++ ...++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4699999999999999999999999999999999999 5 99999 877654332 2356789999999876643
Q ss_pred -------cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH-----HHHH
Q psy13349 449 -------SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI-----ARVI 516 (604)
Q Consensus 449 -------ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial-----ARal 516 (604)
++.+| .+|.+ ++++.++++ . +....++ .+|||||+||+++ ||++
T Consensus 87 ~~~l~~~~~~~~-~~g~~---~~~i~~~l~---------~--------~~~~il~---~~lsggq~qR~~i~~~~~~~~l 142 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGTL---KSEYDKAKE---------Q--------NKICLFE---MNINGVKQLKKSTHIKNALYIF 142 (218)
T ss_dssp TCEEEEEEETTE-EEEEE---HHHHHHHHH---------T--------TCEEEEE---ECHHHHHHHTTCSSCCSCEEEE
T ss_pred cchhhhhhcccc-cCCCc---HHHHHHHHh---------C--------CCcEEEE---ecHHHHHHHHHHhcCCCcEEEE
Confidence 33333 23322 223332222 1 2223333 5799999999999 9999
Q ss_pred ccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 517 l~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
+.+|++++|||||+++|.++++.|.+.+.+..+++| ++| +..||+|+++++
T Consensus 143 l~~~~~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 143 IKPPSTDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp EECSCHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred EeCcCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999999999999999999999987765655 566 456777777654
No 72
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=99.93 E-value=4.3e-27 Score=223.94 Aligned_cols=147 Identities=16% Similarity=0.182 Sum_probs=108.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHH
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELF 467 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~ 467 (604)
+++|+||||||||||+++|+|++. |.++|.+..+......++.++|++|++ +..+|+. +.-.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~-~~~~------- 63 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF-SSKF------- 63 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE-EETT-------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH-Hhhc-------
Confidence 689999999999999999999985 667776654332224577899999987 2333331 1000
Q ss_pred HHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH-----HccCCCeEEEec--cCCCCCHHHHHHH
Q psy13349 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV-----ILKNAPILLLDE--ATSALDSEAEIAI 540 (604)
Q Consensus 468 ~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa-----ll~~p~ililDE--~ts~LD~~~~~~i 540 (604)
.+ -+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+
T Consensus 64 --------------~~-------~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 64 --------------FT-------SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp --------------CC-------CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred --------------CC-------ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH
Confidence 00 0134566677899999999999996 999999999999 9999999999999
Q ss_pred HHHHHHHhCCcEEEEEcc---ChhHHhh-cCeEEEEeCCEEeE
Q psy13349 541 QKSLYNLMKGKTVIAIAH---RLSTISA-MDRLIVLDNGCVAE 579 (604)
Q Consensus 541 ~~~i~~~~~~~t~i~itH---~l~~~~~-~d~i~vl~~G~iv~ 579 (604)
.+.+++ .+.|+|+++| +.+.++. ||| ++|++++
T Consensus 123 ~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 123 RQIMHD--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp HHHHTC--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred HHHHhc--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 998876 4667888885 6677665 677 6677765
No 73
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=99.92 E-value=1.4e-27 Score=249.27 Aligned_cols=141 Identities=16% Similarity=0.198 Sum_probs=115.2
Q ss_pred EEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcc
Q psy13349 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQ 441 (604)
Q Consensus 362 ~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q 441 (604)
++|++| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+ ++....+++.+++++
T Consensus 151 ~~~v~f-y---~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~~- 223 (330)
T 2pt7_A 151 YNLLDN-K---EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLFF- 223 (330)
T ss_dssp TTTSTT-H---HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEEC-
T ss_pred cCchhh-H---HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEEe-
Confidence 555555 5 348999999999999999999999999999999999999999999999865 222222334444432
Q ss_pred cCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC
Q psy13349 442 DTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP 521 (604)
Q Consensus 442 ~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ 521 (604)
| |||+||++|||||..+|+
T Consensus 224 ------------------------------------------------g-------------gg~~~r~~la~aL~~~p~ 242 (330)
T 2pt7_A 224 ------------------------------------------------G-------------GNITSADCLKSCLRMRPD 242 (330)
T ss_dssp ------------------------------------------------B-------------TTBCHHHHHHHHTTSCCS
T ss_pred ------------------------------------------------C-------------CChhHHHHHHHHhhhCCC
Confidence 1 899999999999999999
Q ss_pred eEEEeccCCCCCHHHHHHHHHHHHHHhCCc-EEEEEccChhHHhhcCeEEEEeCCEE
Q psy13349 522 ILLLDEATSALDSEAEIAIQKSLYNLMKGK-TVIAIAHRLSTISAMDRLIVLDNGCV 577 (604)
Q Consensus 522 ililDE~ts~LD~~~~~~i~~~i~~~~~~~-t~i~itH~l~~~~~~d~i~vl~~G~i 577 (604)
+++|||||+. .+.+.++....++ |+++++|+++..+.|||+++|++|+.
T Consensus 243 ilildE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 243 RIILGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp EEEECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred EEEEcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 9999999992 3456666665554 79999999998888999999998864
No 74
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=99.91 E-value=2.9e-27 Score=252.39 Aligned_cols=174 Identities=16% Similarity=0.153 Sum_probs=134.1
Q ss_pred CceeeecceEEeCCc--------------------EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHH
Q psy13349 373 HLIINNLSLTIQPGE--------------------KIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL 432 (604)
Q Consensus 373 ~~~l~~isl~i~~G~--------------------~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~ 432 (604)
+.+|++|||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997653
Q ss_pred hccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh--HHHHH
Q psy13349 433 REQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG--QRQRI 510 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG--q~Qri 510 (604)
| .++++|++...+.|+.||+.++.+. +++.+.++..++ . .++..+ .|||| |+||+
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L-------~------~~~~~~-----~lS~G~~~kqrv 165 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKF-------Y------EYDFFI-----IISATRFKKNDI 165 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTG-------G------GCSEEE-----EEESSCCCHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCC-------C------ccCCeE-----EeCCCCccHHHH
Confidence 2 2789999754466999998876532 223333333322 1 223222 29999 99999
Q ss_pred HHHHHHcc----------CCCeEEEeccCCCCCHHHHHHHHHHHHHHh------C----CcEEEEEccChhH--Hhh-cC
Q psy13349 511 AIARVILK----------NAPILLLDEATSALDSEAEIAIQKSLYNLM------K----GKTVIAIAHRLST--ISA-MD 567 (604)
Q Consensus 511 alARall~----------~p~ililDE~ts~LD~~~~~~i~~~i~~~~------~----~~t~i~itH~l~~--~~~-~d 567 (604)
+|||||.+ +|++++|||||++||+.+++++.+.+++.. . .+++++.||.++. ++. ||
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHH
Confidence 99999999 999999999999999999999998887752 1 3568888999885 555 78
Q ss_pred eEE-EEeCCE
Q psy13349 568 RLI-VLDNGC 576 (604)
Q Consensus 568 ~i~-vl~~G~ 576 (604)
+|. .|.+|+
T Consensus 246 ~I~~~Lpeg~ 255 (413)
T 1tq4_A 246 KLISDLPIYK 255 (413)
T ss_dssp HHHHHSCGGG
T ss_pred HHHHhCccch
Confidence 875 344443
No 75
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=99.91 E-value=4.9e-27 Score=253.44 Aligned_cols=193 Identities=17% Similarity=0.179 Sum_probs=156.1
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCE---eCCCCC-----H
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ---NISNVS-----Q 429 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~---~~~~~~-----~ 429 (604)
+.++++|+++.|+.+.++|+++ |++.+||+++|+||||||||||+++|+|+++|++|.|.++|. ++.++. .
T Consensus 130 ~~l~~~~v~~~~~tg~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~~ 208 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTGVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILGP 208 (438)
T ss_dssp CTTTSCCCCSBCCCSCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTHH
T ss_pred CceEEeccceecCCCceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhccc
Confidence 4588999999997556799999 999999999999999999999999999999999999999998 554321 3
Q ss_pred HHHhccceEEccc-CcCC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcc-ccccCCCCCChhH
Q psy13349 430 ESLREQIGMVTQD-TSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA-HVGEHGIKLSGGQ 506 (604)
Q Consensus 430 ~~~r~~i~~v~Q~-~~lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t-~v~e~g~~LSgGq 506 (604)
..+++.+++++|+ ..++ .-|+.+|+.+.. +... . . +.+. .+=+...+||+||
T Consensus 209 ~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~------------~--~-----~~~v~~~ld~l~~lS~g~ 263 (438)
T 2dpy_A 209 DGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFR------------D--R-----GQHVLLIMDSLTRYAMAQ 263 (438)
T ss_dssp HHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHH------------T--T-----TCEEEEEEECHHHHHHHH
T ss_pred cccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHH------------h--C-----CCCHHHHHHhHHHHHHHH
Confidence 4578899999995 3344 458888886531 1110 0 0 1110 0113356899999
Q ss_pred HHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhC-----Cc-----EEEEEccChhHHhhcCeEEEEeCCE
Q psy13349 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-----GK-----TVIAIAHRLSTISAMDRLIVLDNGC 576 (604)
Q Consensus 507 ~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~-----~~-----t~i~itH~l~~~~~~d~i~vl~~G~ 576 (604)
||++|| +.+|++ |++||+.+...+.+.+.+..+ ++ |++++||+++ ...||++++|.+|+
T Consensus 264 -qrvslA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~ 332 (438)
T 2dpy_A 264 -REIALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGH 332 (438)
T ss_dssp -HHHHHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEE
T ss_pred -HHHHHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcE
Confidence 999999 899998 999999999999999988754 53 9999999999 77799999999999
Q ss_pred EeEecChhHHh
Q psy13349 577 VAEEGSHLDLL 587 (604)
Q Consensus 577 iv~~g~~~~l~ 587 (604)
|+..|++.++.
T Consensus 333 Ivl~~~~~~~~ 343 (438)
T 2dpy_A 333 IVLSRRLAEAG 343 (438)
T ss_dssp EEECHHHHHTT
T ss_pred EEEeCCHHHcc
Confidence 99999988874
No 76
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=99.89 E-value=3.3e-25 Score=228.19 Aligned_cols=176 Identities=15% Similarity=0.170 Sum_probs=128.7
Q ss_pred eeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHHH--hccceEEcccCc-CCcc
Q psy13349 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS----QESL--REQIGMVTQDTS-LLHR 448 (604)
Q Consensus 376 l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~~ 448 (604)
++++||++++|++++++|||||||||+++.|+|++.|++|+|.++|.|+.... ...+ |..+++++|++. +++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35689999999999999999999999999999999999999999998876542 1233 457999999998 7754
Q ss_pred -cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC--eEEE
Q psy13349 449 -SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP--ILLL 525 (604)
Q Consensus 449 -ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~--ilil 525 (604)
|++||+.++.....+.. .++.+ |+.........+|| |||++||||+..+|+ +|+|
T Consensus 170 ~~v~e~l~~~~~~~~d~~---lldt~----------------gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvL 227 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVV---LCDTS----------------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVL 227 (302)
T ss_dssp HHHHHHHHHHHHTTCSEE---EECCC----------------CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEE
T ss_pred HHHHHHHHHHHHcCCcch---HHhcC----------------CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEE
Confidence 99999976421000000 01111 33222222223588 999999999999999 9999
Q ss_pred eccCCCCCHHHHHHHHHHHHHHhCCcEEEEEcc---------ChhHHhh-cCeEEEEeCCEEe
Q psy13349 526 DEATSALDSEAEIAIQKSLYNLMKGKTVIAIAH---------RLSTISA-MDRLIVLDNGCVA 578 (604)
Q Consensus 526 DE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH---------~l~~~~~-~d~i~vl~~G~iv 578 (604)
| ||+++|+.++. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 228 D-ptsglD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 228 D-GNTGLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp E-GGGGGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred e-CCCCcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9 99999998653 22322 23789999999 4555544 6899999999754
No 77
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=99.89 E-value=6.1e-25 Score=222.84 Aligned_cols=146 Identities=20% Similarity=0.244 Sum_probs=96.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHHHHHhcCCCCCC---H
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGRPDAS---E 463 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~---~ 463 (604)
.++|+||||||||||+|+|+|+..|++|+|.++|.++.. ...++.+++++|++.++.. |+.||+.+|..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 3346789999999998866 99999999864221 1
Q ss_pred HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHH
Q psy13349 464 CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS 543 (604)
Q Consensus 464 ~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~ 543 (604)
+.+.+.. ..++...+++ .||||||||+++|||++. +++|||||++||+.. ..+++.
T Consensus 81 ~~i~~~~----~~~~~~~~~~----------------~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD-~~~l~~ 136 (270)
T 3sop_A 81 EPIEKYI----NEQYEKFLKE----------------EVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD-LEFMKH 136 (270)
T ss_dssp HHHHHHH----HHHHHHHHHH----------------HSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH-HHHHHH
T ss_pred HHHHHHH----HHHHHhhhHH----------------hcCcccchhhhhheeeee---eEEEecCCCcCCHHH-HHHHHH
Confidence 2222222 2333333332 699999999999999886 999999999999987 333444
Q ss_pred HHHHhCCcEEEEEccChhHH
Q psy13349 544 LYNLMKGKTVIAIAHRLSTI 563 (604)
Q Consensus 544 i~~~~~~~t~i~itH~l~~~ 563 (604)
+ .+..++|+|.|+.+.+
T Consensus 137 L---~~~~~vI~Vi~K~D~l 153 (270)
T 3sop_A 137 L---SKVVNIIPVIAKADTM 153 (270)
T ss_dssp H---HTTSEEEEEETTGGGS
T ss_pred H---HhcCcEEEEEeccccC
Confidence 4 3348999999988755
No 78
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=99.88 E-value=9.5e-23 Score=214.15 Aligned_cols=81 Identities=17% Similarity=0.189 Sum_probs=75.6
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEE
Q psy13349 501 KLSGGQRQRIAIARVIL---------KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIV 571 (604)
Q Consensus 501 ~LSgGq~QrialARall---------~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~v 571 (604)
.|||||+||++|||+|+ .+||||+||||||+||+.....+.+.+.+.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998763 79999999 444 8999999
Q ss_pred EeCCEEeEecChhHH
Q psy13349 572 LDNGCVAEEGSHLDL 586 (604)
Q Consensus 572 l~~G~iv~~g~~~~l 586 (604)
|++|++++.|+++++
T Consensus 340 l~~G~i~~~g~~~~~ 354 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQ 354 (359)
T ss_dssp EETTEEEECCCTTTS
T ss_pred EECCEEEecCCHHHH
Confidence 999999999999987
No 79
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.88 E-value=5.2e-25 Score=227.74 Aligned_cols=180 Identities=18% Similarity=0.156 Sum_probs=131.8
Q ss_pred cCceEEEEEEEEEeCCCCceeeecceE-----------------------EeCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 356 TNGKIFFKNVSFSYDQKHLIINNLSLT-----------------------IQPGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 356 ~~~~i~~~~vsf~y~~~~~~l~~isl~-----------------------i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
.++.|+++||++.|. |+++++++. +++|+++||+||||||||||+++|+|+++|
T Consensus 40 ~~~~i~~~~v~~~y~---p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~ 116 (312)
T 3aez_A 40 LGEQIDLLEVEEVYL---PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLAR 116 (312)
T ss_dssp TTCCCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHT
T ss_pred CCCeEEeeehhhhhh---hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccc
Confidence 345699999999994 577777765 899999999999999999999999999999
Q ss_pred CccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCC-CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCC
Q psy13349 413 KYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRP-DASECELFNAAKCAEADIFIKSLTDEHGRKGY 491 (604)
Q Consensus 413 ~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~-~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~ 491 (604)
.+|. +++++|+||+++++.|++||+.+... ...+.. ....+.+++..+.. |.
T Consensus 117 ~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~-----d~~~~~~~L~~l~~-----~~ 169 (312)
T 3aez_A 117 WDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESY-----NRRALMRFVTSVKS-----GS 169 (312)
T ss_dssp STTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGB-----CHHHHHHHHHHHHT-----TC
T ss_pred cCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHH-----HHHHHHHHHHHhCC-----Cc
Confidence 8663 47999999999998899999976321 111100 01123344555543 44
Q ss_pred c-cccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHh--hcCe
Q psy13349 492 D-AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS--AMDR 568 (604)
Q Consensus 492 ~-t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~--~~d~ 568 (604)
. ..+ ..|||||+||+++|||++.+|+|+|||||++.+|+.. ..+.+.. + .+|+|+|+.+... .++|
T Consensus 170 ~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R 238 (312)
T 3aez_A 170 DYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSR 238 (312)
T ss_dssp SCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHH
T ss_pred ccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHH
Confidence 3 333 4799999999999999999999999999999998622 1122222 3 5577888876542 3577
Q ss_pred EEEEeCCE
Q psy13349 569 LIVLDNGC 576 (604)
Q Consensus 569 i~vl~~G~ 576 (604)
.+.+.+|+
T Consensus 239 ~~~~rd~~ 246 (312)
T 3aez_A 239 FLAMRTTA 246 (312)
T ss_dssp HHHHTTTG
T ss_pred HHHHHhcc
Confidence 66665554
No 80
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=99.87 E-value=3.6e-24 Score=224.67 Aligned_cols=175 Identities=15% Similarity=0.170 Sum_probs=129.3
Q ss_pred eecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHHH--hccceEEcccCc-CCc-c
Q psy13349 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS----QESL--REQIGMVTQDTS-LLH-R 448 (604)
Q Consensus 377 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~----~~~~--r~~i~~v~Q~~~-lf~-~ 448 (604)
+++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...+ |..+++++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4688999999999999999999999999999999999999999998876532 1233 467999999987 664 4
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC--eEEEe
Q psy13349 449 SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP--ILLLD 526 (604)
Q Consensus 449 ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~--ililD 526 (604)
|++||+.++.....+.. .++.+ |+..........|| |||++||||+..+|+ +|+||
T Consensus 228 tv~e~l~~~~~~~~d~~---lldt~----------------Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD 285 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVV---LCDTS----------------GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD 285 (359)
T ss_dssp HHHHHHHHHHHTTCSEE---EEECC----------------CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE
T ss_pred hHHHHHHHHHhCCCHHH---HHHhc----------------CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc
Confidence 99999976421100000 11111 33222222223588 999999999999999 99999
Q ss_pred ccCCCCCHHHHHHHHHHHHHHhCCcEEEEEcc---------ChhHHhh-cCeEEEEeCCEEe
Q psy13349 527 EATSALDSEAEIAIQKSLYNLMKGKTVIAIAH---------RLSTISA-MDRLIVLDNGCVA 578 (604)
Q Consensus 527 E~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH---------~l~~~~~-~d~i~vl~~G~iv 578 (604)
||+++|+.++.. .+.+ ..+.|+|++|| .++.... .+.|..+..|+.+
T Consensus 286 -pttglD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 286 -GNTGLNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp -GGGGGGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred -CCCCCCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 999999987642 2322 23789999999 4455543 6899999999753
No 81
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=99.87 E-value=9.8e-25 Score=212.69 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=108.2
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIR 451 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 451 (604)
.++++| .++++||+++|+||||||||||+++|+|+++. |.+++.....-.....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 79999999999999999999999999999863 44444221111112346789999999988854 677
Q ss_pred HHHhcCC------C--CCCHHHHHHHHH----------HchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 452 DNILYGR------P--DASECELFNAAK----------CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 452 eNi~~g~------~--~~~~~~i~~a~~----------~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
+|+.... . ..+.+++.+.++ ..++.++....| ..||
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~----------------~~lS---------- 136 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMP----------------EAVT---------- 136 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCT----------------TSEE----------
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcC----------------CcEE----------
Confidence 7763210 0 112223322221 122222222211 2344
Q ss_pred HHHccCCCeEEEeccCCCC----CHHHHHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEe
Q psy13349 514 RVILKNAPILLLDEATSAL----DSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLD 573 (604)
Q Consensus 514 Rall~~p~ililDE~ts~L----D~~~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~ 573 (604)
||+.+|++++|||||+++ |+...+++.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 137 -~l~~~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 137 -VFLAPPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp -EEEECSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred -EEEECCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 899999999999999998 7778899999888775 37899999999998765 99999984
No 82
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=99.86 E-value=2.1e-23 Score=218.57 Aligned_cols=194 Identities=15% Similarity=0.177 Sum_probs=145.1
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC-------CCHH
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN-------VSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~-------~~~~ 430 (604)
..++.+++++.|+.+..+++++ |+|.+||+++|+||||||||||+++|+|+..|+.|.|.++|.+.++ ....
T Consensus 44 ~~i~~~~l~~~~~tg~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~~ 122 (347)
T 2obl_A 44 DPLLRQVIDQPFILGVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQS 122 (347)
T ss_dssp CSTTCCCCCSEECCSCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCHH
T ss_pred CCeeecccceecCCCCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhhh
Confidence 4588999999997556799999 9999999999999999999999999999999999999998865211 1112
Q ss_pred HHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc-ccCCCCCChhHHHH
Q psy13349 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV-GEHGIKLSGGQRQR 509 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v-~e~g~~LSgGq~Qr 509 (604)
.+++.+.+++|.+. ...+++..+.....+.++... .|.+..+ -+...+||+|| ||
T Consensus 123 ~~~~~v~~~~~~~~----------------~~~~r~~~~~~~~~~ae~~~~-------~~~~vl~~ld~~~~lS~g~-r~ 178 (347)
T 2obl_A 123 TLSKCVLVVTTSDR----------------PALERMKAAFTATTIAEYFRD-------QGKNVLLMMDSVTRYARAA-RD 178 (347)
T ss_dssp HHTTEEEEEECTTS----------------CHHHHHHHHHHHHHHHHHHHT-------TTCEEEEEEETHHHHHHHH-HH
T ss_pred hhhceEEEEECCCC----------------CHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHhhHHHHHHHH-HH
Confidence 23344555554321 112333333333333333222 1433211 13456899999 99
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh---CCc-----EEEEEccChhHHhhcCeEEEEeCCEEeEec
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM---KGK-----TVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~---~~~-----t~i~itH~l~~~~~~d~i~vl~~G~iv~~g 581 (604)
+++| +.+|++ |+++|+.....+.+.+.+.. ++. |++++||+++ -..||+++++.+|+|+..|
T Consensus 179 v~la---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 179 VGLA---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp HHHH---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCH
T ss_pred HHHH---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeC
Confidence 9999 688888 99999999999999998775 366 8999999999 5669999999999999999
Q ss_pred ChhHH
Q psy13349 582 SHLDL 586 (604)
Q Consensus 582 ~~~~l 586 (604)
+.+++
T Consensus 249 ~l~~~ 253 (347)
T 2obl_A 249 ELAEE 253 (347)
T ss_dssp HHHTT
T ss_pred CHHHc
Confidence 88776
No 83
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=99.85 E-value=1.2e-24 Score=219.56 Aligned_cols=174 Identities=19% Similarity=0.179 Sum_probs=140.8
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhccceEEcc-----cCcCCc
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-YGEILIDGQNISNVSQESLREQIGMVTQ-----DTSLLH 447 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~ 447 (604)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... ++.+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 5899999 8999999999999999999999999999998 999999998876442 345678888 555677
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHch-----------------HHHHH------------HHhhhhhhcCCC
Q psy13349 448 RSIRDNILYGRPDA-------SECELFNAAKCAE-----------------ADIFI------------KSLTDEHGRKGY 491 (604)
Q Consensus 448 ~ti~eNi~~g~~~~-------~~~~i~~a~~~~~-----------------~~~~i------------~~lp~~~~~~g~ 491 (604)
.+++.++.. +|+. +.+.+..+++.+. ++..+ ..+++ ++
T Consensus 89 ~~la~aL~~-~p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~-----~l 162 (261)
T 2eyu_A 89 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSF-----IL 162 (261)
T ss_dssp HHHHHHHHH-CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHH-----HE
T ss_pred HHHHHHHhh-CCCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHH-----Hh
Confidence 789999887 4554 6665555544321 11111 12344 89
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCe--EEEeccCCCCCHHH---------HHHHHHHHHHHhCCcEEEEEccCh
Q psy13349 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPI--LLLDEATSALDSEA---------EIAIQKSLYNLMKGKTVIAIAHRL 560 (604)
Q Consensus 492 ~t~v~e~g~~LSgGq~QrialARall~~p~i--lilDE~ts~LD~~~---------~~~i~~~i~~~~~~~t~i~itH~l 560 (604)
++.+++++..+|+| ||++++|+++.+|++ +|+||+|+++|... +..+.+.+....+|+|.+.++||+
T Consensus 163 ~~vi~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~ 240 (261)
T 2eyu_A 163 QGIISQRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA 240 (261)
T ss_dssp EEEEEEEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHH
T ss_pred hEEEEEEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence 99999999999999 999999999999999 99999999999873 445777888888899999999998
Q ss_pred h
Q psy13349 561 S 561 (604)
Q Consensus 561 ~ 561 (604)
+
T Consensus 241 ~ 241 (261)
T 2eyu_A 241 S 241 (261)
T ss_dssp C
T ss_pred h
Confidence 6
No 84
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.85 E-value=5e-23 Score=228.27 Aligned_cols=172 Identities=13% Similarity=0.095 Sum_probs=125.6
Q ss_pred EeCCCCceeeecce-EEeCCcEEEEEcCCCCcHHHHHHH--HhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCc
Q psy13349 368 SYDQKHLIINNLSL-TIQPGEKIGLVGRSGAGKSTINNL--LLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTS 444 (604)
Q Consensus 368 ~y~~~~~~l~~isl-~i~~G~~~~ivG~sGsGKSTl~~l--l~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~ 444 (604)
.|+.+.++|+++|| .+++|++++|+||||||||||+++ +.|+++|++|.|+++|.+. ..+....++.+++++|++.
T Consensus 20 ~~~~g~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~-~~~~~~~~~~~g~~~q~~~ 98 (525)
T 1tf7_A 20 KMRTMIEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEET-PQDIIKNARSFGWDLAKLV 98 (525)
T ss_dssp EECCCCTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHGGGTCCHHHHH
T ss_pred cccCCchhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHHHHHcCCChHHhh
Confidence 34555679999999 999999999999999999999999 7899999999999999873 2223445678999999875
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEE
Q psy13349 445 LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524 (604)
Q Consensus 445 lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ili 524 (604)
.. +|+.+...... ++..++++..++.+...+.+. .||||| |++++
T Consensus 99 ~~-----~~l~~~~~~~~-~~~~~~l~~~~l~~~~~~~~~----------------~LS~g~-------------~~~li 143 (525)
T 1tf7_A 99 DE-----GKLFILDASPD-PEGQEVVGGFDLSALIERINY----------------AIQKYR-------------ARRVS 143 (525)
T ss_dssp HT-----TSEEEEECCCC-SSCCSCCSSHHHHHHHHHHHH----------------HHHHHT-------------CSEEE
T ss_pred cc-----CcEEEEecCcc-cchhhhhcccCHHHHHHHHHH----------------HHHHcC-------------CCEEE
Confidence 21 12211110000 011112233444444444443 467774 77999
Q ss_pred EeccCCC-----CCHHHHHHHHHHHHHHh-CCcEEEEEccChhHH---------hh-cCeEEEEeCC
Q psy13349 525 LDEATSA-----LDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI---------SA-MDRLIVLDNG 575 (604)
Q Consensus 525 lDE~ts~-----LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~---------~~-~d~i~vl~~G 575 (604)
|||||+. +|+...+.+.+.++++. .++|+|+|||+++.+ +. ||+|++|++|
T Consensus 144 lDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~~ 210 (525)
T 1tf7_A 144 IDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRNV 210 (525)
T ss_dssp EECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEEE
T ss_pred ECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEEE
Confidence 9999984 68999999999988765 489999999999874 45 9999999983
No 85
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=99.84 E-value=2.6e-23 Score=199.59 Aligned_cols=172 Identities=15% Similarity=0.169 Sum_probs=126.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHH
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECE 465 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~ 465 (604)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..++. .+++.+++++|+. .++ ++|+.... ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~~~--~~~-- 68 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSRVG--LEP-- 68 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEECC--CCC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhccc--ccC--
Confidence 78999999999999999999999999 999 999999886543 5788999999986 332 23332110 000
Q ss_pred HHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH-HHHH---HHccCCCeEEEec--cCCCCCHHHHHH
Q psy13349 466 LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI-AIAR---VILKNAPILLLDE--ATSALDSEAEIA 539 (604)
Q Consensus 466 i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri-alAR---all~~p~ililDE--~ts~LD~~~~~~ 539 (604)
++ ...+..+|+.+..+|||||+++ +++| |+..+|+++|||| ||..+|+...+.
T Consensus 69 -----------------~~----~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 69 -----------------PP----GKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp -----------------CS----SSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred -----------------Cc----cccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 00 0234578888889999999998 5566 7899999999999 899999988777
Q ss_pred HHHHHHHHhCCcEEEE----EccChhHHhhcCeEEEEeCCEEeEecChhHHhhcCcHHHHHHH
Q psy13349 540 IQKSLYNLMKGKTVIA----IAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598 (604)
Q Consensus 540 i~~~i~~~~~~~t~i~----itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~~~~y~~l~~ 598 (604)
+.+.+.+ .+|+|+ |+||.+ ...+|+|..+++|+|++-.. -+++..|.++++
T Consensus 128 l~~~l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~~----~nr~~~~~~i~~ 182 (189)
T 2i3b_A 128 VRQTLST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVTK----ENRNHLLPDIVT 182 (189)
T ss_dssp HHHHHHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECCS----SSGGGHHHHHHH
T ss_pred HHHHHhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeCh----HhHHHHHHHHHH
Confidence 7777653 345553 449876 45678888889999987532 124455555554
No 86
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=99.84 E-value=1.1e-23 Score=198.68 Aligned_cols=111 Identities=18% Similarity=0.234 Sum_probs=87.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEECCEeCCCCC---HHHHh-ccce----EEcccCcCCcccHHHHHh
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYDIK---YGEILIDGQNISNVS---QESLR-EQIG----MVTQDTSLLHRSIRDNIL 455 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~~~~~~~---~~~~r-~~i~----~v~Q~~~lf~~ti~eNi~ 455 (604)
++++|+|+||||||||+++|+|+|+|+ .|+|.+||.++.+++ .+.+| +.++ +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 66788 5788 899999888 222
Q ss_pred cCCCCCCHHHHHHHHHHchHHHHHHH-hhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeE
Q psy13349 456 YGRPDASECELFNAAKCAEADIFIKS-LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523 (604)
Q Consensus 456 ~g~~~~~~~~i~~a~~~~~~~~~i~~-lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~il 523 (604)
+ + ++. .+++++++.. +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~-~~~-----~a~l~~~i~~~l~------g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----S-EEE-----GNDLDWIYERYLS------DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----C-HHH-----HTCHHHHHHHHTT------TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----C-hhh-----hhCHHHHHHhhCC------CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 1 222 6789999998 87 799999995 9999999999999999999874
No 87
>4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans}
Probab=99.83 E-value=7.3e-21 Score=210.55 Aligned_cols=76 Identities=21% Similarity=0.372 Sum_probs=71.3
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCC
Q psy13349 500 IKL-SGGQRQRIAIARVILKNA--PILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575 (604)
Q Consensus 500 ~~L-SgGq~QrialARall~~p--~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G 575 (604)
..| ||||+||++||||++.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 456 999999999999999999 9999999999999999999999998887789999999999999999999999554
No 88
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=99.83 E-value=6.7e-24 Score=224.91 Aligned_cols=175 Identities=19% Similarity=0.177 Sum_probs=142.4
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHhccceEEcc-----cCcCCc
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-YGEILIDGQNISNVSQESLREQIGMVTQ-----DTSLLH 447 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g~~~~~~~~~~~r~~i~~v~Q-----~~~lf~ 447 (604)
++|++++ +++|+.++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .+++.+++|+| ++..|.
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3566665 7899999999999999999999999999998 899987776653 2 35778999999 888999
Q ss_pred ccHHHHHhcCCCCC-------CHHHHHHHHHHchH-------------HHHHHH----------------hhhhhhcCCC
Q psy13349 448 RSIRDNILYGRPDA-------SECELFNAAKCAEA-------------DIFIKS----------------LTDEHGRKGY 491 (604)
Q Consensus 448 ~ti~eNi~~g~~~~-------~~~~i~~a~~~~~~-------------~~~i~~----------------lp~~~~~~g~ 491 (604)
+++++|+.. +|+. +++.+..+++.++. .+.+.+ +++ ++
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~-----~l 273 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSF-----IL 273 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHH-----SC
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHH-----hh
Confidence 999999998 5665 67767666665431 111222 344 89
Q ss_pred ccccccCCCCCChhHHHHHHHHHHHccCCCe--EEEeccCCCCCHH----H-----HHHHHHHHHHHhCCcEEEEEccCh
Q psy13349 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPI--LLLDEATSALDSE----A-----EIAIQKSLYNLMKGKTVIAIAHRL 560 (604)
Q Consensus 492 ~t~v~e~g~~LSgGq~QrialARall~~p~i--lilDE~ts~LD~~----~-----~~~i~~~i~~~~~~~t~i~itH~l 560 (604)
++.+++++..+||| ||+++||+++.+|++ +|+||+|++||.. + +..+.+.+....+|+|.+.++||+
T Consensus 274 ~~vv~qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~ 351 (372)
T 2ewv_A 274 QGIISQRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEA 351 (372)
T ss_dssp CEEEEEEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSS
T ss_pred hEEEEEEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHH
Confidence 99999999999999 999999999999999 9999999999975 2 345677777777899999999999
Q ss_pred hH
Q psy13349 561 ST 562 (604)
Q Consensus 561 ~~ 562 (604)
+.
T Consensus 352 ~~ 353 (372)
T 2ewv_A 352 SP 353 (372)
T ss_dssp CS
T ss_pred cC
Confidence 74
No 89
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=99.83 E-value=2.8e-21 Score=223.70 Aligned_cols=169 Identities=26% Similarity=0.328 Sum_probs=120.5
Q ss_pred HHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCC-HHHHHHHHHHchHHHHH
Q psy13349 401 TINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDAS-ECELFNAAKCAEADIFI 479 (604)
Q Consensus 401 Tl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~-~~~i~~a~~~~~~~~~i 479 (604)
|+..|..+.+.|+.|+|+++|.++.++....+.+.++++.+ +.+...+.. -.+..+..+ ...+++
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~~~~~~v~~~l~~~~~------------~~l~~~~~~~~~~~~~~~~--~~~~~L 448 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHEFTELSISEELEFLKN------------LNLTEREREIVGELLKEIE--KRLEFL 448 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHHHHHSBHHHHHHHHHS------------CCCCTTTTTTHHHHHHHHH--HHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHHhhhCCHHHHHHHHHh------------ccCcHHHHHHHHhhHHHHH--HHHHHH
Confidence 34455666789999999999998754332222223332211 111100000 011111111 111222
Q ss_pred HHhhhhhhcCCCccc-cccCCCCCChhHHHHHHHHHHHccCCC--eEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEE
Q psy13349 480 KSLTDEHGRKGYDAH-VGEHGIKLSGGQRQRIAIARVILKNAP--ILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIA 555 (604)
Q Consensus 480 ~~lp~~~~~~g~~t~-v~e~g~~LSgGq~QrialARall~~p~--ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~ 555 (604)
.. .|++.. .+....+|||||+||++|||||..+|+ +|||||||++||+.+...+.+.|+++. .++|+|+
T Consensus 449 ~~-------vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~Tviv 521 (916)
T 3pih_A 449 VD-------VGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGNTVIV 521 (916)
T ss_dssp HT-------TTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTCEEEE
T ss_pred HH-------cCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCCEEEE
Confidence 22 266543 466677999999999999999999887 999999999999999999999999876 4899999
Q ss_pred EccChhHHhhcCeEEEE------eCCEEeEecChhHHhhcC
Q psy13349 556 IAHRLSTISAMDRLIVL------DNGCVAEEGSHLDLLKKN 590 (604)
Q Consensus 556 itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~~ 590 (604)
|||+++.+..||+|++| ++|+++.+|+++++++..
T Consensus 522 VtHd~~~~~~aD~ii~lgpgag~~~G~iv~~G~~~e~~~~~ 562 (916)
T 3pih_A 522 VEHDEEVIRNADHIIDIGPGGGTNGGRVVFQGTVDELLKNP 562 (916)
T ss_dssp ECCCHHHHHTCSEEEEEESSSGGGCSEEEEEECHHHHHHSC
T ss_pred EeCCHHHHHhCCEEEEEcCCcccCCCEEEEeechhhhhcCc
Confidence 99999999999999999 899999999999998753
No 90
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=99.83 E-value=5.7e-21 Score=196.27 Aligned_cols=182 Identities=18% Similarity=0.152 Sum_probs=121.7
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhccceEEcccCcCCcccHH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG-EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIR 451 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 451 (604)
.++|+++++.+++|++++|+||||||||||++.++|...|++| +|.+.+.+ .+...+++++..+.|+..+ +..
T Consensus 22 ~~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~ 95 (296)
T 1cr0_A 22 CTGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQS 95 (296)
T ss_dssp CTTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGC
T ss_pred HHHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhc
Confidence 3589999999999999999999999999999999999999888 77654433 3556666666555554322 233
Q ss_pred HHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH-HHHHHHHHHHccCCCeEEEeccCC
Q psy13349 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ-RQRIAIARVILKNAPILLLDEATS 530 (604)
Q Consensus 452 eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq-~QrialARall~~p~ililDE~ts 530 (604)
+|+..+. .++++..++. ++.+... ++ .+.+....+|.+| +||+. |+++..+|+++|+||||+
T Consensus 96 ~~l~~~~--~~~~~~~~~~-----~~~l~~~-------~l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~ 158 (296)
T 1cr0_A 96 DSLKREI--IENGKFDQWF-----DELFGND-------TF--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISI 158 (296)
T ss_dssp HHHHHHH--HHHTHHHHHH-----HHHHSSS-------CE--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-
T ss_pred cccccCC--CCHHHHHHHH-----HHHhccC-------CE--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccc
Confidence 4444321 1112221111 1111111 11 1333335689999 67777 999999999999999999
Q ss_pred ---C---CCH-HHHHHHHHHHHHHh--CCcEEEEEccCh--h--------------------HHh-hcCeEEEEeCCEE
Q psy13349 531 ---A---LDS-EAEIAIQKSLYNLM--KGKTVIAIAHRL--S--------------------TIS-AMDRLIVLDNGCV 577 (604)
Q Consensus 531 ---~---LD~-~~~~~i~~~i~~~~--~~~t~i~itH~l--~--------------------~~~-~~d~i~vl~~G~i 577 (604)
+ +|. .....+.+.|+++. .++|+|++||.. + .++ .||+|++|++|+.
T Consensus 159 ~~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 159 VVSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred cCCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 4 455 55677888887764 289999999995 3 444 5999999998875
No 91
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=99.82 E-value=4.3e-21 Score=225.75 Aligned_cols=170 Identities=16% Similarity=0.132 Sum_probs=122.6
Q ss_pred ceEEEEE-----EEEEeCCCCceeeecceEEeC-------CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC
Q psy13349 358 GKIFFKN-----VSFSYDQKHLIINNLSLTIQP-------GEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425 (604)
Q Consensus 358 ~~i~~~~-----vsf~y~~~~~~l~~isl~i~~-------G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~ 425 (604)
..++++| |++.|+++..+++|++|++++ |++++|+||||||||||++++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~------------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV------------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-------------
T ss_pred ceEEEEeccccEEEEEecCCceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-------------
Confidence 4599999 999995556799999999987 999999999999999999999 98863
Q ss_pred CCCHHHHhccce-EEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 426 NVSQESLREQIG-MVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 426 ~~~~~~~r~~i~-~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
..++| ||||++. ..|+.|||.. + .++.+.+. . |. .++|+
T Consensus 815 -------~aqiG~~Vpq~~~--~l~v~d~I~~-r--------------ig~~d~~~---~-----~~--------stf~~ 854 (1022)
T 2o8b_B 815 -------MAQMGCYVPAEVC--RLTPIDRVFT-R--------------LGASDRIM---S-----GE--------STFFV 854 (1022)
T ss_dssp -------HHTTTCCEESSEE--EECCCSBEEE-E--------------CC-------------------------CHHHH
T ss_pred -------HhheeEEeccCcC--CCCHHHHHHH-H--------------cCCHHHHh---h-----ch--------hhhHH
Confidence 23566 9999973 4577777632 1 12222111 0 22 35677
Q ss_pred hHHHHHHHHHHHccCCCeEEEeccCCCCCHHHH-HHHHHHHHHHh-C-CcEEEEEccChhHHhh-cCeEEEEeCCEEe--
Q psy13349 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAE-IAIQKSLYNLM-K-GKTVIAIAHRLSTISA-MDRLIVLDNGCVA-- 578 (604)
Q Consensus 505 Gq~QrialARall~~p~ililDE~ts~LD~~~~-~~i~~~i~~~~-~-~~t~i~itH~l~~~~~-~d~i~vl~~G~iv-- 578 (604)
++++ +++||+++.+|+++||||||+|+|+... ..+++.++.+. + ++|+|++||+++.+.. +|++.++ +|++.
T Consensus 855 em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~ 932 (1022)
T 2o8b_B 855 ELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACM 932 (1022)
T ss_dssp HHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC
T ss_pred HHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEE
Confidence 7665 9999999999999999999999999875 44567776664 3 7899999999998876 7998887 58887
Q ss_pred EecCh
Q psy13349 579 EEGSH 583 (604)
Q Consensus 579 ~~g~~ 583 (604)
+.|+.
T Consensus 933 ~~~~~ 937 (1022)
T 2o8b_B 933 VENEC 937 (1022)
T ss_dssp -----
T ss_pred EecCc
Confidence 55544
No 92
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=99.81 E-value=1e-19 Score=190.67 Aligned_cols=78 Identities=31% Similarity=0.407 Sum_probs=69.5
Q ss_pred CCCCChhHHH------HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEE
Q psy13349 499 GIKLSGGQRQ------RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIV 571 (604)
Q Consensus 499 g~~LSgGq~Q------rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~v 571 (604)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 4679999999 6788899999999999999999999999999999998764 46899999999888888999999
Q ss_pred Ee--CCE
Q psy13349 572 LD--NGC 576 (604)
Q Consensus 572 l~--~G~ 576 (604)
|+ +|.
T Consensus 326 l~~~~g~ 332 (339)
T 3qkt_A 326 ISLENGS 332 (339)
T ss_dssp EEEETTE
T ss_pred EEecCCc
Confidence 85 454
No 93
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=99.81 E-value=2.4e-20 Score=214.24 Aligned_cols=185 Identities=18% Similarity=0.243 Sum_probs=135.9
Q ss_pred CCCCcHHHHHHHHhcC---------CCCCccEEEECCEeCCC---CCHHHHhccceEEcccCcCCcccHHHHHhcCCCCC
Q psy13349 394 RSGAGKSTINNLLLRF---------YDIKYGEILIDGQNISN---VSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDA 461 (604)
Q Consensus 394 ~sGsGKSTl~~ll~~~---------~~~~~G~I~i~g~~~~~---~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~ 461 (604)
.|..||+++.+.+... +.|..|+|.++|.++.+ ++..+....+.-++|++.... + +...+..
T Consensus 270 ~~~~~~~~~~~~~~~~~Cp~C~G~Rl~~~~~~v~~~G~~I~~~~~~~v~e~~~~~~~~~~~~~~~~-~--~~~~~~~--- 343 (842)
T 2vf7_A 270 ESASMKKRVQGYMISEECPLCHGKRLRQEALNVTFAGLDITELSRLPLARVSELLRPYAEEREPGH-A--ERVKNRP--- 343 (842)
T ss_dssp CCHHHHHHHGGGCEEEECSSSSSSCBCTTTTTCBBTTBCHHHHHHSBHHHHHHHHHHHHTTCSSCS-T--TSSSSCS---
T ss_pred cCHHHHHHHHhhccccCCCCCCCCccCHHHhhcccCCccHHHHhhcCHHHHHHHHHhhhhhhhhcc-c--chhhcch---
Confidence 4667899998877663 34578999999999887 555555555555566554332 2 1122211
Q ss_pred CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccc-cccCCCCCChhHHHHHHHHHHHccCC--CeEEEeccCCCCCHHHHH
Q psy13349 462 SECELFNAAKCAEADIFIKSLTDEHGRKGYDAH-VGEHGIKLSGGQRQRIAIARVILKNA--PILLLDEATSALDSEAEI 538 (604)
Q Consensus 462 ~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~-v~e~g~~LSgGq~QrialARall~~p--~ililDE~ts~LD~~~~~ 538 (604)
.+.++...+ ...+...+..+. ..|++.. .+....+|||||||||+|||||..+| ++|||||||++||+...+
T Consensus 344 ~~~~i~~~i-~~ei~~rl~~L~----~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~ 418 (842)
T 2vf7_A 344 EQAIALQRM-AADLVKRLDVLL----HLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTE 418 (842)
T ss_dssp SHHHHHHHH-HHHHHHHHHHHH----HTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHH
T ss_pred hhHHHHHHH-HHHHHHHHHHHH----hCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHH
Confidence 122222111 111122222221 2377654 67777899999999999999999999 499999999999999999
Q ss_pred HHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEE------eCCEEeEecChhHHhhc
Q psy13349 539 AIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVL------DNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 539 ~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~ 589 (604)
.+.+.++++. .++|+|+|+||++.+..||+|++| ++|+++..|+++++.+.
T Consensus 419 ~L~~~l~~L~~~G~TVIvVeHdl~~l~~aD~ii~lgpgaG~~~G~iv~~g~~~~~~~~ 476 (842)
T 2vf7_A 419 ALLSALENLKRGGNSLFVVEHDLDVIRRADWLVDVGPEAGEKGGEILYSGPPEGLKHV 476 (842)
T ss_dssp HHHHHHHHHHTTTCEEEEECCCHHHHTTCSEEEEECSSSGGGCCSEEEEECGGGGGGC
T ss_pred HHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEeCCCcccCCCEEEEecCHHHHHhc
Confidence 9999998876 489999999999999999999999 79999999999999875
No 94
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.81 E-value=1.5e-21 Score=195.15 Aligned_cols=173 Identities=13% Similarity=0.146 Sum_probs=106.8
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHH
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIR 451 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 451 (604)
++++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.+++++|++....-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999976 666554 357789999999743345899
Q ss_pred HHHhcCCC--CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccC
Q psy13349 452 DNILYGRP--DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529 (604)
Q Consensus 452 eNi~~g~~--~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~t 529 (604)
+|+.+... ..++.+-. ....+.+.++.+.+ +.+..+ ..||+||+||+++ ++++.+|+++|||||.
T Consensus 77 ~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~l~~-----~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~~ 143 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAF---DNDLMHRTLKNIVE-----GKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGIL 143 (245)
T ss_dssp HHHHHHTTCCCTTSGGGB---CHHHHHHHHHHHHT-----TCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECTT
T ss_pred HhhhhhccCCCCCCcccc---cHHHHHHHHHHHHC-----CCCeec----ccccccccCccCc-eEEecCCCEEEEeCcc
Confidence 98765321 11111100 00011222333333 444333 4799999999988 6899999999999998
Q ss_pred CCCCHHHHHHHHHHHHHHhCCcEEEEEccChh-HHhhc-CeEEEEeCCEEeEecChhHHhh
Q psy13349 530 SALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS-TISAM-DRLIVLDNGCVAEEGSHLDLLK 588 (604)
Q Consensus 530 s~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~-~~~~~-d~i~vl~~G~iv~~g~~~~l~~ 588 (604)
...|+. +.+. .+.|++++||... ..+.+ +.+ ++|+ +.+++.+
T Consensus 144 ~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~ 187 (245)
T 2jeo_A 144 VFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILT 187 (245)
T ss_dssp TTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHH
T ss_pred ccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHH
Confidence 887764 2222 3789999999844 33443 334 6675 5566653
No 95
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=99.80 E-value=1.8e-23 Score=202.35 Aligned_cols=159 Identities=19% Similarity=0.271 Sum_probs=121.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccEEEECCEeCCCCCHHHHhccceEEcccCcCCccc
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYD-------------IKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRS 449 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~t 449 (604)
+++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+.+.+++.+ +|++++|.++
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999986 78897 589888888888898876 7999999999
Q ss_pred HHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH-HHccCCCeEEEecc
Q psy13349 450 IRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR-VILKNAPILLLDEA 528 (604)
Q Consensus 450 i~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR-all~~p~ililDE~ 528 (604)
+.+|+ +|. +++++.++++......+ .-.|+ |+++.... ++ .|| +++.+|++++|||+
T Consensus 76 ~~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~-----g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~ 133 (198)
T 1lvg_A 76 FSGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQ-----GVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQR 133 (198)
T ss_dssp ETTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHH-----HHHHHTTS-----------SC-CCEEEEEECSCHHHHHHH
T ss_pred ecCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHH-----HHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHH
Confidence 99998 764 56778777764211000 01233 55554321 12 567 89999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeC
Q psy13349 529 TSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDN 574 (604)
Q Consensus 529 ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~ 574 (604)
|+++|.++++.|.+.+.+..++ +.++| ++ ..+|+|+++++
T Consensus 134 ~~~~d~~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 134 LRLRNTETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp HHHHTCSCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred HHhcCCCCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999999999999776544 35677 44 78999999874
No 96
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=99.80 E-value=1.5e-20 Score=208.35 Aligned_cols=152 Identities=14% Similarity=0.032 Sum_probs=117.1
Q ss_pred ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHh-cCC
Q psy13349 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNIL-YGR 458 (604)
Q Consensus 380 sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~-~g~ 458 (604)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.+++|++. .++++|.. +|
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~~---~~l~~~~~~~g- 332 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEESR---AQLLRNAYSWG- 332 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSCH---HHHHHHHHTTS-
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCCH---HHHHHHHHHcC-
Confidence 5599999999999999999999999999998875 53 12456667652 34555542 22
Q ss_pred CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHH---
Q psy13349 459 PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE--- 535 (604)
Q Consensus 459 ~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~--- 535 (604)
.+.+ ++.. .|+..........|||||+||+++||++..+|+++|+| ||++||..
T Consensus 333 --~~~~------------~~~~--------~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~ 389 (525)
T 1tf7_A 333 --MDFE------------EMER--------QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSN 389 (525)
T ss_dssp --CCHH------------HHHH--------TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCH
T ss_pred --CCHH------------HHHh--------CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCCh
Confidence 1111 1111 14444444556789999999999999999999999999 99999999
Q ss_pred --HHHHHHHHHHHHh-CCcEEEEEccCh----------hHHhh-cCeEEEEeCCE
Q psy13349 536 --AEIAIQKSLYNLM-KGKTVIAIAHRL----------STISA-MDRLIVLDNGC 576 (604)
Q Consensus 536 --~~~~i~~~i~~~~-~~~t~i~itH~l----------~~~~~-~d~i~vl~~G~ 576 (604)
..+.+.+.++.++ .+.|+|+|+|+. ..+.. ||+|++|++|+
T Consensus 390 ~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 390 NAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888888887665 589999999998 55554 89999999887
No 97
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=99.79 E-value=1.3e-21 Score=207.27 Aligned_cols=150 Identities=17% Similarity=0.308 Sum_probs=98.6
Q ss_pred eeeecceEEeC--CcEEEEEcCCCCcHHHHHHHHhcCCCCCc----cEEEE----CCEeCCCCCHHHHhccceEEcccCc
Q psy13349 375 IINNLSLTIQP--GEKIGLVGRSGAGKSTINNLLLRFYDIKY----GEILI----DGQNISNVSQESLREQIGMVTQDTS 444 (604)
Q Consensus 375 ~l~~isl~i~~--G~~~~ivG~sGsGKSTl~~ll~~~~~~~~----G~I~i----~g~~~~~~~~~~~r~~i~~v~Q~~~ 444 (604)
+.+.|++++++ |++++|+||||||||||+++|+|+++|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 35679999999 99999999999999999999999999999 99987 35555 4555555 56999999999
Q ss_pred CCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc-c-------cCCCCCChhHHHHHHHHHHH
Q psy13349 445 LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV-G-------EHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 445 lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v-~-------e~g~~LSgGq~QrialARal 516 (604)
+|..|++|||.++.++..+..........+...++..++... .++..+ + ++|.++|+||+||++++|+|
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~---~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l 311 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFCIQYEGKAHPFLDSMIKEY---PFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLL 311 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHHHHHHSCCCHHHHHHHHHS---CCSEEEEEECCCC-----------CCSHHHHHHHH
T ss_pred HHHHhccCCEEEEeCCchHHHHHHHHHcCCCCHHHHHHHhhc---CCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHH
Confidence 999999999998765443333333332222233444443200 122211 2 44556666666666666666
Q ss_pred ---cc--CCCeEEEeccC
Q psy13349 517 ---LK--NAPILLLDEAT 529 (604)
Q Consensus 517 ---l~--~p~ililDE~t 529 (604)
++ +++++++||||
T Consensus 312 ~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 312 KKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp HHHHHGGGCCCEEEECSS
T ss_pred HHHHHHcCCCEEEeCCCC
Confidence 55 56666666665
No 98
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=99.79 E-value=9.3e-20 Score=209.63 Aligned_cols=100 Identities=28% Similarity=0.396 Sum_probs=91.5
Q ss_pred CCccc-cccCCCCCChhHHHHHHHHHHHccCC--CeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhh
Q psy13349 490 GYDAH-VGEHGIKLSGGQRQRIAIARVILKNA--PILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISA 565 (604)
Q Consensus 490 g~~t~-v~e~g~~LSgGq~QrialARall~~p--~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~ 565 (604)
|++.. .+....+|||||+|||+||++|..+| ++|||||||++||+...+.+.+.|+++. .+.|+|+|+||++.+..
T Consensus 492 GL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ 571 (972)
T 2r6f_A 492 GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTMLA 571 (972)
T ss_dssp TCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHHS
T ss_pred CCCccccCCccccCCHHHHHHHHHHHHHhhCCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHh
Confidence 77653 56677899999999999999999985 9999999999999999999999999886 48999999999999999
Q ss_pred cCeEEEE------eCCEEeEecChhHHhhc
Q psy13349 566 MDRLIVL------DNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 566 ~d~i~vl------~~G~iv~~g~~~~l~~~ 589 (604)
||+|++| ++|+++.+|+++++.+.
T Consensus 572 ADrIi~LgpgaG~~gG~iv~~G~~~e~~~~ 601 (972)
T 2r6f_A 572 ADYLIDIGPGAGIHGGEVVAAGTPEEVMND 601 (972)
T ss_dssp CSEEEEECSSSGGGCCSEEEEECTTTTTTC
T ss_pred CCEEEEeCCCccCCCCEEEEecCHHHHHhh
Confidence 9999999 79999999999998874
No 99
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=99.77 E-value=1.9e-20 Score=186.60 Aligned_cols=179 Identities=17% Similarity=0.081 Sum_probs=109.4
Q ss_pred EEEEEEEEEeCCCCceeeecc-eEEeCCcEEEEEcCCCCcHHHHHHHHh--cCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLS-LTIQPGEKIGLVGRSGAGKSTINNLLL--RFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~is-l~i~~G~~~~ivG~sGsGKSTl~~ll~--~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
+++++++..++ .|+++- =.|++|++++|+||||||||||+++++ |+.++.+|.+.+++.+... .....++.+
T Consensus 7 ~~~~~i~tg~~----~lD~~l~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 81 (251)
T 2ehv_A 7 QPVRRVKSGIP----GFDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEERAR-DLRREMASF 81 (251)
T ss_dssp -CCCEECCSCT----TTGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHH-HHHHHHHTT
T ss_pred cccceeecCCH----hHHHHhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccCCHH-HHHHHHHHc
Confidence 44555555443 344441 179999999999999999999999999 7656777888887744221 122344568
Q ss_pred eEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHH
Q psy13349 437 GMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV 515 (604)
Q Consensus 437 ~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARa 515 (604)
++++|+...+.. ++.++....... ...+... .+ ...+-++.++...+..
T Consensus 82 g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---------------------~~--------~~~~~~~~~~~~~~~l 131 (251)
T 2ehv_A 82 GWDFEKYEKEGKIAIVDGVSSVVGL-PSEEKFV---------------------LE--------DRFNVDNFLRYIYRVV 131 (251)
T ss_dssp TCCHHHHHHTTSEEEEC-------------------------------------------------CCHHHHHHHHHHHH
T ss_pred CCChHHHhhcCCEEEEEcccccccc-cccccee---------------------cc--------CcccHHHHHHHHHHHH
Confidence 888887644322 444443221100 0000000 00 0112334444444444
Q ss_pred HccCCCeEEEeccCCCCC-----HHHHHHHHHHHHHHh-CCcEEEEEccChhHH----------hhc-CeEEEEe
Q psy13349 516 ILKNAPILLLDEATSALD-----SEAEIAIQKSLYNLM-KGKTVIAIAHRLSTI----------SAM-DRLIVLD 573 (604)
Q Consensus 516 ll~~p~ililDE~ts~LD-----~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~----------~~~-d~i~vl~ 573 (604)
-..+|+++++||||+++| +...+.+.+.++.+. .++|+|++||.++.. ..| |+|++|+
T Consensus 132 ~~~~p~~lilDep~~~ld~~~d~~~~~~~l~~l~~~l~~~g~tii~vtH~~~~~~~~~~~~~i~~~~aD~vi~l~ 206 (251)
T 2ehv_A 132 KAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HhhCCCEEEEccHHHHHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCCcccccccChhhEeeeEEEEEe
Confidence 457999999999999997 566666777776654 489999999999886 457 9999995
No 100
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12
Probab=99.77 E-value=4.8e-19 Score=191.55 Aligned_cols=73 Identities=25% Similarity=0.316 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHHc----cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEEe
Q psy13349 501 KLSGGQRQRIAIARVIL----KNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLD 573 (604)
Q Consensus 501 ~LSgGq~QrialARall----~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl~ 573 (604)
.||||||||++|||+|+ ++||++||||||++||+.....+.+.+.+.. ++.++|+|||+......||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 6899999999999999999999999998875 3689999999998888899999985
No 101
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=99.77 E-value=9.2e-19 Score=203.59 Aligned_cols=165 Identities=13% Similarity=0.089 Sum_probs=118.2
Q ss_pred ceEEEEEEEEEeCC----CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHH--------hcCCCCCccEEEECCEeCC
Q psy13349 358 GKIFFKNVSFSYDQ----KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLL--------LRFYDIKYGEILIDGQNIS 425 (604)
Q Consensus 358 ~~i~~~~vsf~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll--------~~~~~~~~G~I~i~g~~~~ 425 (604)
+.+++++...-+-. ++.+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 45778776433311 24689999999999999999999999999999999 55555443321
Q ss_pred CCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh
Q psy13349 426 NVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505 (604)
Q Consensus 426 ~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG 505 (604)
++.+. .+|. ..++.+. + ...+|+|
T Consensus 702 ----------~~~~d---~i~~------------------------~ig~~d~---l----------------~~~lStf 725 (934)
T 3thx_A 702 ----------VSIVD---CILA------------------------RVGAGDS---Q----------------LKGVSTF 725 (934)
T ss_dssp ----------EECCS---EEEE------------------------ECC----------------------------CHH
T ss_pred ----------chHHH---HHHH------------------------hcCchhh---H----------------HHhHhhh
Confidence 00000 0110 0111110 0 1247888
Q ss_pred HHHHHHHHHHH--ccCCCeEEEeccCCCCCHHHHHHH-HHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEEeEe
Q psy13349 506 QRQRIAIARVI--LKNAPILLLDEATSALDSEAEIAI-QKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580 (604)
Q Consensus 506 q~QrialARal--l~~p~ililDE~ts~LD~~~~~~i-~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~ 580 (604)
++++..+|+++ +.+|+++||||||+|+|+.....+ ...++.+. .++|+|++||+.+....||++..+++|++...
T Consensus 726 ~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~ 805 (934)
T 3thx_A 726 MAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTAL 805 (934)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEE
T ss_pred HHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEE
Confidence 88888888888 999999999999999999988888 44455543 38999999999998888999999999999987
Q ss_pred cChhHH
Q psy13349 581 GSHLDL 586 (604)
Q Consensus 581 g~~~~l 586 (604)
++.+++
T Consensus 806 ~~~~~l 811 (934)
T 3thx_A 806 TTEETL 811 (934)
T ss_dssp EETTEE
T ss_pred ecCCcE
Confidence 776665
No 102
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=99.77 E-value=4.8e-20 Score=193.69 Aligned_cols=166 Identities=20% Similarity=0.185 Sum_probs=116.6
Q ss_pred ceeeec-ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC--CCCc----cE-EEECCEeCCCCCHHHHhccceEEcccCcC
Q psy13349 374 LIINNL-SLTIQPGEKIGLVGRSGAGKSTINNLLLRFY--DIKY----GE-ILIDGQNISNVSQESLREQIGMVTQDTSL 445 (604)
Q Consensus 374 ~~l~~i-sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~--~~~~----G~-I~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 445 (604)
+.|+++ ++.+++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 467775 7899999999999999999999999999998 6666 67 999986641 24578899999988
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc-------c
Q psy13349 446 LHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL-------K 518 (604)
Q Consensus 446 f~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall-------~ 518 (604)
+..++.+|+.+..+. + |++|+|++.++++++ .
T Consensus 192 ~~~~v~~ni~~~~~~-~----------------------------------------~~~~~~~l~~~~~~~~~lS~G~~ 230 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N----------------------------------------SNHQMLLVQQAEDKIKELLNTDR 230 (349)
T ss_dssp CHHHHGGGEEEEECC-S----------------------------------------HHHHHHHHHHHHHHHHHSSSSSS
T ss_pred CHHHHhhCEEEEecC-C----------------------------------------hHHHHHHHHHHHHHHHHhccccC
Confidence 888999998876431 1 223444455555554 6
Q ss_pred CCCeEEEeccCCCCCHHH------------HHHHHHHHHHHh--CCcEEEEEccChhHHhh-cCeEEEEeCCEEeEecCh
Q psy13349 519 NAPILLLDEATSALDSEA------------EIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSH 583 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~------------~~~i~~~i~~~~--~~~t~i~itH~l~~~~~-~d~i~vl~~G~iv~~g~~ 583 (604)
+|+++|+||||+.+|++. ..++.+.|.++. .++|+|+++|....... ++.+.+...|++++++.+
T Consensus 231 ~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~ 310 (349)
T 1pzn_A 231 PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSAT 310 (349)
T ss_dssp CEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCS
T ss_pred CCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCc
Confidence 899999999999999863 244455555543 37899999998875542 345667778888887776
Q ss_pred hHH
Q psy13349 584 LDL 586 (604)
Q Consensus 584 ~~l 586 (604)
..|
T Consensus 311 ~rL 313 (349)
T 1pzn_A 311 LRV 313 (349)
T ss_dssp EEE
T ss_pred EEE
Confidence 655
No 103
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B*
Probab=99.77 E-value=9.5e-19 Score=160.84 Aligned_cols=88 Identities=27% Similarity=0.337 Sum_probs=75.5
Q ss_pred CCcccc-----ccCCCCCChhHHHHHHHH------HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEc
Q psy13349 490 GYDAHV-----GEHGIKLSGGQRQRIAIA------RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIA 557 (604)
Q Consensus 490 g~~t~v-----~e~g~~LSgGq~QrialA------Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~it 557 (604)
++++.+ .....+||||||||++|| |||+.+|++++|||||++||+.+...+.+.+.+.. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 556554 345679999999999876 99999999999999999999999999999998864 478999999
Q ss_pred cChhHHhhcCeEEEE--eCCEE
Q psy13349 558 HRLSTISAMDRLIVL--DNGCV 577 (604)
Q Consensus 558 H~l~~~~~~d~i~vl--~~G~i 577 (604)
|+......||++++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999766779999999 55643
No 104
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=99.76 E-value=1.4e-18 Score=200.49 Aligned_cols=140 Identities=24% Similarity=0.296 Sum_probs=107.5
Q ss_pred CCcccHHHHHhcCCC-CCCHHHHHHHHHH--chHHHHHHHhhhhhhcCCCccc-cccCCCCCChhHHHHHHHHHHHccC-
Q psy13349 445 LLHRSIRDNILYGRP-DASECELFNAAKC--AEADIFIKSLTDEHGRKGYDAH-VGEHGIKLSGGQRQRIAIARVILKN- 519 (604)
Q Consensus 445 lf~~ti~eNi~~g~~-~~~~~~i~~a~~~--~~~~~~i~~lp~~~~~~g~~t~-v~e~g~~LSgGq~QrialARall~~- 519 (604)
++..||.|++.|... ..+.++- ..++. ..+.+.+..|- ..|++.. .+....+|||||+|||+||+||..+
T Consensus 466 ~~~ltV~e~l~f~enl~l~~~~~-~i~~~i~~ei~~Rl~~L~----~vGL~~l~l~r~~~tLSGGEkQRV~LA~aL~~~~ 540 (993)
T 2ygr_A 466 VCELSIADCADFLNALTLGPREQ-AIAGQVLKEIRSRLGFLL----DVGLEYLSLSRAAATLSGGEAQRIRLATQIGSGL 540 (993)
T ss_dssp SSHHHHHHHHHTTTTTTSCHHHH-HHHHHHHHHHHHHHHHHH----HHTGGGSCTTCBGGGCCHHHHHHHHHHHHHTTCC
T ss_pred HhhCCHHHHHHHHHhcCCCHHHh-HHHHHHHHHHHHHHHHHh----hCCCCccccCCCcccCCHHHHHHHHHHHHHhhCC
Confidence 456699999988532 2233221 11110 11112222221 1277654 5667789999999999999999998
Q ss_pred -CCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEEEccChhHHhhcCeEEEE------eCCEEeEecChhHHhhc
Q psy13349 520 -APILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVL------DNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 520 -p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~l~~~~~~d~i~vl------~~G~iv~~g~~~~l~~~ 589 (604)
|++|||||||++||+...+.+.+.|+++. .++|+|+|+||++.+..||+|++| ++|+++..|+++++.+.
T Consensus 541 ~~~llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~~ADrIi~Lgp~aG~~gG~iv~~G~~~e~~~~ 618 (993)
T 2ygr_A 541 VGVLYVLDEPSIGLHQRDNRRLIETLTRLRDLGNTLIVVEHDEDTIEHADWIVDIGPGAGEHGGRIVHSGPYDELLRN 618 (993)
T ss_dssp CSCEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHTCSEEEEECSSSGGGCCSCCEEECHHHHHHC
T ss_pred CCcEEEEeCcccCCCHHHHHHHHHHHHHHHHcCCEEEEECCCHHHHHhCCEEEEecCccccCCCEEEEeeCHHHhhhh
Confidence 58999999999999999999999998876 589999999999999999999999 69999999999999875
No 105
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=99.76 E-value=1.8e-19 Score=205.94 Aligned_cols=144 Identities=18% Similarity=0.201 Sum_probs=112.1
Q ss_pred ceEEEEEEEEEeCC----CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEECCEeCCCCCHHHH
Q psy13349 358 GKIFFKNVSFSYDQ----KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-IKYGEILIDGQNISNVSQESL 432 (604)
Q Consensus 358 ~~i~~~~vsf~y~~----~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~I~i~g~~~~~~~~~~~ 432 (604)
+.+++++. ++|- ++.+++|+||+ |++++|+||||||||||+++++|+.. ++.|.+. + ..
T Consensus 549 ~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v----p-------a~ 612 (765)
T 1ewq_A 549 DRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV----P-------AE 612 (765)
T ss_dssp SSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB----S-------SS
T ss_pred CcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee----e-------hh
Confidence 46888887 4442 35799999999 99999999999999999999999874 6778652 1 12
Q ss_pred hccceEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 433 REQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
+..+++++| +|.. ++.||+.. .+|+|++|++.
T Consensus 613 ~~~i~~v~~---i~~~~~~~d~l~~--------------------------------------------g~S~~~~e~~~ 645 (765)
T 1ewq_A 613 EAHLPLFDG---IYTRIGASDDLAG--------------------------------------------GKSTFMVEMEE 645 (765)
T ss_dssp EEEECCCSE---EEEECCC--------------------------------------------------CCSHHHHHHHH
T ss_pred ccceeeHHH---hhccCCHHHHHHh--------------------------------------------cccHHHHHHHH
Confidence 456888877 4543 55555421 25889999999
Q ss_pred HHHHH--ccCCCeEEEecc---CCCCCHHHH-HHHHHHHHHHhCCcEEEEEccChhHHhhc
Q psy13349 512 IARVI--LKNAPILLLDEA---TSALDSEAE-IAIQKSLYNLMKGKTVIAIAHRLSTISAM 566 (604)
Q Consensus 512 lARal--l~~p~ililDE~---ts~LD~~~~-~~i~~~i~~~~~~~t~i~itH~l~~~~~~ 566 (604)
+|+++ +.+|+++||||| ||++|+.+. ..+.+.+.+ .++|+|++||+.+....+
T Consensus 646 la~il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 646 VALILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp HHHHHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred HHHHHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 99999 999999999999 999999876 578888876 478999999999877654
No 106
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.76 E-value=1.4e-21 Score=190.30 Aligned_cols=140 Identities=15% Similarity=0.219 Sum_probs=105.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc---cHHHHHhcC--
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR---SIRDNILYG-- 457 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~---ti~eNi~~g-- 457 (604)
.++|+++||+||||||||||+++|+|++.| .+++++||+++++. |+++|..+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 58999999988743 677776543
Q ss_pred CCC-CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhH----HHHHHHHHHHccCCCeEEEeccCCC-
Q psy13349 458 RPD-ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQ----RQRIAIARVILKNAPILLLDEATSA- 531 (604)
Q Consensus 458 ~~~-~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq----~QrialARall~~p~ililDE~ts~- 531 (604)
.|. .+.+++.++++..++ ...+...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~----------------~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~ 124 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLR----------------GLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDL 124 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHT----------------TCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTT
T ss_pred ChhhhhHHHHHHHHHHHHc----------------CCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHh
Confidence 332 233344444332221 112223355678885 5799999999999999999999999
Q ss_pred ------CCHHHHHHHHHHHHHH--hCCcEEEEEccCh
Q psy13349 532 ------LDSEAEIAIQKSLYNL--MKGKTVIAIAHRL 560 (604)
Q Consensus 532 ------LD~~~~~~i~~~i~~~--~~~~t~i~itH~l 560 (604)
||+.++..+.+.+.+. .+++|++.++|+.
T Consensus 125 ~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 125 MDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred cCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988764 2588999999985
No 107
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.75 E-value=6.4e-20 Score=177.84 Aligned_cols=168 Identities=17% Similarity=0.201 Sum_probs=105.0
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC-----CCCccEEEE-------CCEeC---
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY-----DIKYGEILI-------DGQNI--- 424 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~I~i-------~g~~~--- 424 (604)
++++|++|.|+ .+++++ |++++|++++|+|+||||||||++.|+|.. .|+.|.+.. ++..+
T Consensus 4 l~~~~~~~~~~--~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~Dt 79 (210)
T 1pui_A 4 LNYQQTHFVMS--APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLVDL 79 (210)
T ss_dssp -------CEEE--ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEEEC
T ss_pred hhhhhhhheee--cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEEEC
Confidence 78999999996 357888 899999999999999999999999999998 888888765 22222
Q ss_pred CCCC--------HHHHhccceEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccc-
Q psy13349 425 SNVS--------QESLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAH- 494 (604)
Q Consensus 425 ~~~~--------~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~- 494 (604)
.... .+.+++.++++.|+...+++ ++..++..+.. ..++++. +++.. .+....
T Consensus 80 ~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~---------~~~~~-------~~~~~~~ 142 (210)
T 1pui_A 80 PGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMI---------EWAVD-------SNIAVLV 142 (210)
T ss_dssp CCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHH---------HHHHH-------TTCCEEE
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHH---------HHHHH-------cCCCeEE
Confidence 1111 13455556666665443333 34444433211 0111111 12211 133332
Q ss_pred cccCCCCCChhHHHH-HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy13349 495 VGEHGIKLSGGQRQR-IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548 (604)
Q Consensus 495 v~e~g~~LSgGq~Qr-ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~ 548 (604)
++..-..+|+||||| +..||+++++|+.+++|||||++|+.....+.+.|.+..
T Consensus 143 v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 143 LLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred EEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 355555799999999 899999999999999999999999999999999987765
No 108
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=99.75 E-value=2.5e-19 Score=176.22 Aligned_cols=148 Identities=21% Similarity=0.208 Sum_probs=101.3
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-------CccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHH
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-------KYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI 454 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-------~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi 454 (604)
-+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .+ ++.+++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 7999999999999999999999999996655 444788877542 11 2357788888888877999998
Q ss_pred hcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH-------ccCCCeEEEec
Q psy13349 455 LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI-------LKNAPILLLDE 527 (604)
Q Consensus 455 ~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal-------l~~p~ililDE 527 (604)
.+..+.... +. ++.+..++++ ..+|+++++||
T Consensus 95 ~~~~~~~~~-~~----------------------------------------~~~~~~~~~~~~~~~~~~~~~~llilDe 133 (231)
T 4a74_A 95 YVARAFNSN-HQ----------------------------------------MLLVQQAEDKIKELLNTDRPVKLLIVDS 133 (231)
T ss_dssp EEEECCSHH-HH----------------------------------------HHHHHHHHHHHHHHTTSSSCEEEEEEET
T ss_pred EEEecCChH-HH----------------------------------------HHHHHHHHHHHHHhcccCCceeEEEECC
Confidence 875432211 11 1111222222 34899999999
Q ss_pred cCCCCCHH-------HH-----HHHHHHHHHHh--CCcEEEEEcc----ChhHHhh-cCeEEEEeCCE
Q psy13349 528 ATSALDSE-------AE-----IAIQKSLYNLM--KGKTVIAIAH----RLSTISA-MDRLIVLDNGC 576 (604)
Q Consensus 528 ~ts~LD~~-------~~-----~~i~~~i~~~~--~~~t~i~itH----~l~~~~~-~d~i~vl~~G~ 576 (604)
||+.+|++ .+ ..+.+.+.+.. .++|+|++|| ....++. ||++++|++|+
T Consensus 134 ~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~~ 201 (231)
T 4a74_A 134 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKGK 201 (231)
T ss_dssp SSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEECT
T ss_pred hHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEecC
Confidence 99999984 22 25666665543 3899999999 4444665 79999998763
No 109
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=99.75 E-value=2e-20 Score=210.24 Aligned_cols=189 Identities=12% Similarity=0.199 Sum_probs=121.6
Q ss_pred eEEEEEEEEEeCCC-Cceeeec----------ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEECCEeCCC
Q psy13349 359 KIFFKNVSFSYDQK-HLIINNL----------SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-KYGEILIDGQNISN 426 (604)
Q Consensus 359 ~i~~~~vsf~y~~~-~~~l~~i----------sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~~~~~ 426 (604)
.++++|+++.|+.. .++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|+++|.++..
T Consensus 10 ~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~~ 86 (608)
T 3szr_A 10 SVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLKL 86 (608)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEEE
T ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEEE
Confidence 57899999999642 3445444 466765 999999999999999999999988 79999999998632
Q ss_pred --C-CHHHHhccceEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCC
Q psy13349 427 --V-SQESLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502 (604)
Q Consensus 427 --~-~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~L 502 (604)
. ....+|+.++|++|++.+++. |++||+.++. . ... +.. ..+
T Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~------~~~---------~~~-------~~~ 132 (608)
T 3szr_A 87 KKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------N------AIA---------GEG-------MGI 132 (608)
T ss_dssp EECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------H------HHH---------CSS-------SCC
T ss_pred ecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------H------Hhc---------CCc-------ccc
Confidence 1 235688999999999988755 8999986421 0 000 100 011
Q ss_pred ChhHHHHHHHHHHHccCCCeEEEecc------CCCCCHHHHHHHHHHHHHHh---CCcEEEEEccChhH--------Hhh
Q psy13349 503 SGGQRQRIAIARVILKNAPILLLDEA------TSALDSEAEIAIQKSLYNLM---KGKTVIAIAHRLST--------ISA 565 (604)
Q Consensus 503 SgGq~QrialARall~~p~ililDE~------ts~LD~~~~~~i~~~i~~~~---~~~t~i~itH~l~~--------~~~ 565 (604)
| ++++.++++...+|+++++||| |++||+..+..+.+.++++. .+.++++++|+++. ++.
T Consensus 133 s---~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~ 209 (608)
T 3szr_A 133 S---HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQE 209 (608)
T ss_dssp C---SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHH
T ss_pred c---hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHH
Confidence 1 2334455555668999999999 99999999999999998853 25678888999762 222
Q ss_pred -----cCeEEEEeCCEEeEecChhHHh
Q psy13349 566 -----MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 566 -----~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
...|.|+.++.+++.|+.+++.
T Consensus 210 v~~~g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 210 VDPEGDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp HCSSCCSEEEEEECGGGSSSSSTTCCC
T ss_pred HhhcCCceEEEecchhhcCcccHHHHH
Confidence 2558899999999888865543
No 110
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=99.74 E-value=9.8e-20 Score=187.56 Aligned_cols=162 Identities=16% Similarity=0.098 Sum_probs=80.9
Q ss_pred EEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC-CCCCccEEEECCEeCCCCCHHHHhccceEEcc
Q psy13349 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF-YDIKYGEILIDGQNISNVSQESLREQIGMVTQ 441 (604)
Q Consensus 363 ~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~-~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q 441 (604)
+|+++.|++ +.++++++|+| +|+||||||||||++.|.|. ..|++| |.++|.++.. . .-++.+++++|
T Consensus 2 ~~l~~~~~~-~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t--~~~~~~~~~~q 70 (301)
T 2qnr_A 2 SNLPNQVHR-KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T--VQIEASTVEIE 70 (301)
T ss_dssp -----------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEEEC
T ss_pred CCCcceECC-EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c--ceEeeEEEEec
Confidence 478888964 56999999998 99999999999999999998 888999 8888877643 1 11457899999
Q ss_pred cCcCC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCC
Q psy13349 442 DTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNA 520 (604)
Q Consensus 442 ~~~lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p 520 (604)
++.++ .-|+.|+..++......++.. .+.+++... .+.. -.++|||||||+++|||+.
T Consensus 71 ~~~~~~~ltv~Dt~g~~~~~~~~e~~~------~l~~~l~~~--------~~~~----~~~~sgg~rqrv~~ara~~--- 129 (301)
T 2qnr_A 71 ERGVKLRLTVVDTPGYGDAINCRDCFK------TIISYIDEQ--------FERY----LHDESGLNRRHIIDNRVHC--- 129 (301)
T ss_dssp ---CCEEEEEEEEC-----------CT------THHHHHHHH--------HHHH----HHHHTSSCCTTCCCCCCCE---
T ss_pred CCCcccCcchhhhhhhhhhcCcHHHHH------HHHHHHHHH--------HHHH----HHHhCHHhhhhhhhhhhhh---
Confidence 87765 459999988764311101111 111112111 1111 1258999999999999986
Q ss_pred CeEEEeccCCC-CCHHHHHHHHHHHHHHh--CCcEEEEEccChh
Q psy13349 521 PILLLDEATSA-LDSEAEIAIQKSLYNLM--KGKTVIAIAHRLS 561 (604)
Q Consensus 521 ~ililDE~ts~-LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~ 561 (604)
++++||||++ ||+... +.++++. .+.++|+.+|++.
T Consensus 130 -ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 -CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp -EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred -eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999985 999874 3333333 2578888899974
No 111
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=99.74 E-value=4.3e-20 Score=195.05 Aligned_cols=148 Identities=16% Similarity=0.146 Sum_probs=117.3
Q ss_pred EEEEEEEE---eCC-CCcee---------eecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC
Q psy13349 361 FFKNVSFS---YDQ-KHLII---------NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV 427 (604)
Q Consensus 361 ~~~~vsf~---y~~-~~~~l---------~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~ 427 (604)
+|+||+|+ |++ +.++| +++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|. .++
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PEL 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SCC
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--ccc
Confidence 78999999 864 23455 9999999999999999999999999999999999999999999985 355
Q ss_pred CHHHHhccceEEc-ccCcC---CcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCC
Q psy13349 428 SQESLREQIGMVT-QDTSL---LHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503 (604)
Q Consensus 428 ~~~~~r~~i~~v~-Q~~~l---f~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LS 503 (604)
.....++.+++++ |++.+ +..|+++||..+....++..+...++.+++.+++..+|. |++|.+++.+.+-+
T Consensus 215 ~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~-----g~~~~l~t~H~~~~ 289 (361)
T 2gza_A 215 FLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAAS-----GHGGSITSCHAGSC 289 (361)
T ss_dssp CCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHT-----TCCSCEEEEECSSH
T ss_pred CccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhc-----CCCeEEEEECCCCH
Confidence 5555778999999 88876 777999999987654444444444555677889999998 99999998887778
Q ss_pred hhHHHHHHHHHH
Q psy13349 504 GGQRQRIAIARV 515 (604)
Q Consensus 504 gGq~QrialARa 515 (604)
.+..+|++....
T Consensus 290 ~~~~~Rl~~l~~ 301 (361)
T 2gza_A 290 ELTFERLALMVL 301 (361)
T ss_dssp HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh
Confidence 899999988763
No 112
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=99.72 E-value=1.7e-18 Score=181.91 Aligned_cols=146 Identities=21% Similarity=0.262 Sum_probs=104.2
Q ss_pred EEEEEEeCC-CCceeeecce-------EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCC-ccEEEECCEeCCCCCHHHHh
Q psy13349 363 KNVSFSYDQ-KHLIINNLSL-------TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-YGEILIDGQNISNVSQESLR 433 (604)
Q Consensus 363 ~~vsf~y~~-~~~~l~~isl-------~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~I~i~g~~~~~~~~~~~r 433 (604)
.+++++|.+ ..+.|+++.+ ...+|+.++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .+
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~~ 167 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---HE 167 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---CC
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---hh
Confidence 567777744 4457777776 77899999999999999999999999999987 56765433332 221 12
Q ss_pred ccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 434 EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 434 ~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
...++++|.+.-.. .++-.+ +||
T Consensus 168 ~~~~~v~q~~~~~~-----------------------------------------------------~~~~~~----~La 190 (356)
T 3jvv_A 168 SKKCLVNQREVHRD-----------------------------------------------------TLGFSE----ALR 190 (356)
T ss_dssp CSSSEEEEEEBTTT-----------------------------------------------------BSCHHH----HHH
T ss_pred ccccceeeeeeccc-----------------------------------------------------cCCHHH----HHH
Confidence 23344444431100 011111 999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCC
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G 575 (604)
|||..+|+++++|||| |+++.+.+.+. ...|+|+++++|+.+.+..+||+++|..|
T Consensus 191 ~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 191 SALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp HHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred HHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 9999999999999999 77775555444 33589999999999999889999888543
No 113
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=99.72 E-value=4.2e-18 Score=175.21 Aligned_cols=163 Identities=16% Similarity=0.130 Sum_probs=109.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH--hccceEEcccCcCCcc-cHHHHHhcC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ----ESL--REQIGMVTQDTSLLHR-SIRDNILYG 457 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~----~~~--r~~i~~v~Q~~~lf~~-ti~eNi~~g 457 (604)
+|++++|+|||||||||++++|+|++.|++|+|.++|.|+..... ..| |..+++++|++.+++. |+++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 699999999999999999999999999999999999999865431 233 4579999999988765 888888642
Q ss_pred CCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC--eEEEeccCCCCCHH
Q psy13349 458 RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP--ILLLDEATSALDSE 535 (604)
Q Consensus 458 ~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~--ililDE~ts~LD~~ 535 (604)
.. + +.+..+-.. .|... .....++..++||.+||||+..+|+ ++.|| |+++
T Consensus 181 ~~-----------~--~~d~~llDt------~G~~~---~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~---- 233 (304)
T 1rj9_A 181 KA-----------R--GYDLLFVDT------AGRLH---TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTG---- 233 (304)
T ss_dssp HH-----------H--TCSEEEECC------CCCCT---TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBC----
T ss_pred Hh-----------C--CCCEEEecC------CCCCC---chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHH----
Confidence 10 0 000000000 02110 0112246677999999999999999 44455 4444
Q ss_pred HHHHHHHHHHHHh--CCcEEEEEccChhHHhh----------cCeEEEEeCCE
Q psy13349 536 AEIAIQKSLYNLM--KGKTVIAIAHRLSTISA----------MDRLIVLDNGC 576 (604)
Q Consensus 536 ~~~~i~~~i~~~~--~~~t~i~itH~l~~~~~----------~d~i~vl~~G~ 576 (604)
..+.+.+++.. .+.|+|++||...+.+. --.|..+-.|+
T Consensus 234 --~~~~~~~~~~~~~~~~t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 234 --QNGLEQAKKFHEAVGLTGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp --THHHHHHHHHHHHHCCSEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred --HHHHHHHHHHHHHcCCcEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 34444444432 27899999998544221 13566666665
No 114
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.70 E-value=6.6e-19 Score=188.44 Aligned_cols=166 Identities=18% Similarity=0.194 Sum_probs=100.5
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccce
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~ 437 (604)
+.|.++|++++|++ +++++++||+| +|+||||||||||+++|+|...|..| .+|.++.. .....++.++
T Consensus 10 ~~l~~~~l~~~y~~-~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~-~~t~~~~~i~ 78 (418)
T 2qag_C 10 GYVGFANLPNQVYR-KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRI-KKTVQVEQSK 78 (418)
T ss_dssp -----CCCCCCTTT-TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEEEE
T ss_pred CcEEEEecceeECC-EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCC-ccceeeeeEE
Confidence 45899999999965 57999999998 99999999999999999999886655 23333221 1112245799
Q ss_pred EEcccCcCC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH
Q psy13349 438 MVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516 (604)
Q Consensus 438 ~v~Q~~~lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal 516 (604)
+++|++.++ ..|+.||+.++.. .+.++.+. .+.+++.. .++.+++||++||||+
T Consensus 79 ~v~q~~~~~~~Ltv~Dt~g~~~~-~~~~~~~~-----~i~~~i~~-------------------~~~~~l~qr~~IaRal 133 (418)
T 2qag_C 79 VLIKEGGVQLLLTIVDTPGFGDA-VDNSNCWQ-----PVIDYIDS-------------------KFEDYLNAESRVNRRQ 133 (418)
T ss_dssp CC------CEEEEEEECC------------CH-----HHHHHHHH-------------------HHHHHTTTSCC-CCCC
T ss_pred EEEecCCcccceeeeechhhhhh-ccchhhHH-----HHHHHHHH-------------------HHHHHHHHHHHHHHHh
Confidence 999998877 5599999988753 11111111 11222221 2334567899999999
Q ss_pred ccCCC---eEEEeccC-CCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHH
Q psy13349 517 LKNAP---ILLLDEAT-SALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTI 563 (604)
Q Consensus 517 l~~p~---ililDE~t-s~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~ 563 (604)
+++|+ ++++|||| ++||+... .+++. +..+.++|+|.|+.+.+
T Consensus 134 ~~d~~~~vlL~ldePt~~~L~~~d~-~~lk~---L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 134 MPDNRVQCCLYFIAPSGHGLKPLDI-EFMKR---LHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCCC-CCEEEEECCC-CCSCCHHHH-HHHHH---HTTTSEEEEEEESTTSS
T ss_pred ccCCCeeEEEEEecCcccCCCHHHH-HHHHH---HhccCcEEEEEEcccCc
Confidence 99999 99999999 69998874 33333 34578889998887653
No 115
>3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B*
Probab=99.70 E-value=4.5e-17 Score=153.54 Aligned_cols=79 Identities=27% Similarity=0.346 Sum_probs=71.4
Q ss_pred CCCCChhHHHHHHHHHHHc----cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEE--
Q psy13349 499 GIKLSGGQRQRIAIARVIL----KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL-- 572 (604)
Q Consensus 499 g~~LSgGq~QrialARall----~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl-- 572 (604)
...||||||||++|||+|+ ++|+++||||||++||+.++..+.+.|++..++.++|+|||+....+.||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999996 5579999999999999999999999999888788999999999999999999854
Q ss_pred eCCEE
Q psy13349 573 DNGCV 577 (604)
Q Consensus 573 ~~G~i 577 (604)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 57753
No 116
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=99.70 E-value=6.9e-18 Score=165.80 Aligned_cols=166 Identities=14% Similarity=0.071 Sum_probs=114.0
Q ss_pred CCceeeecce-EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhc---cceEEcccCcCCc
Q psy13349 372 KHLIINNLSL-TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE---QIGMVTQDTSLLH 447 (604)
Q Consensus 372 ~~~~l~~isl-~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~---~i~~v~Q~~~lf~ 447 (604)
+.+.|+++.. .+++|+.++|+||||||||||++.+++...+++|.+.+.+.+. +...+++ .+++.+|+..-
T Consensus 8 g~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~-- 82 (235)
T 2w0m_A 8 GILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE-- 82 (235)
T ss_dssp SCHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT--
T ss_pred CchHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh--
Confidence 4567999998 8999999999999999999999999998888888887766443 3333322 23433333210
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCC--eEEE
Q psy13349 448 RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP--ILLL 525 (604)
Q Consensus 448 ~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~--ilil 525 (604)
+++..-.. ... ... + .+ +. ...|.+|.++...+.+...+|+ ++++
T Consensus 83 ----~~~~~~~~-~~~--------------~~~--~------~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~llil 129 (235)
T 2w0m_A 83 ----KKLIIIDA-LMK--------------EKE--D------QW---SL---VNLTPEELVNKVIEAKQKLGYGKARLVI 129 (235)
T ss_dssp ----TTEEEEEC-CC--------------------C------TT---BC---SSCCHHHHHHHHHHHHHHHCSSCEEEEE
T ss_pred ----CCEEEEec-ccc--------------ccC--c------ee---ee---cCCCHHHHHHHHHHHHHhhCCCceEEEE
Confidence 01111000 000 000 0 00 11 1348999988888887778999 9999
Q ss_pred eccCCCC--CHHHHHHHHHHHHHHh--CCcEEEEEccCh--------hHHh-hcCeEEEEeCC
Q psy13349 526 DEATSAL--DSEAEIAIQKSLYNLM--KGKTVIAIAHRL--------STIS-AMDRLIVLDNG 575 (604)
Q Consensus 526 DE~ts~L--D~~~~~~i~~~i~~~~--~~~t~i~itH~l--------~~~~-~~d~i~vl~~G 575 (604)
||||+.+ |+.....+.+.++++. .+.|+|+++|.. ..++ .||+|++|++.
T Consensus 130 De~~~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 130 DSVSALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp ETGGGGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred ECchHhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 9999888 9988888988887764 488999999998 3354 48999999764
No 117
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=99.69 E-value=1.7e-17 Score=192.52 Aligned_cols=157 Identities=17% Similarity=0.160 Sum_probs=104.2
Q ss_pred ceEEEEEEEEEe-----C-CCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH
Q psy13349 358 GKIFFKNVSFSY-----D-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES 431 (604)
Q Consensus 358 ~~i~~~~vsf~y-----~-~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~ 431 (604)
+.+++++..--. + +++.+++|+||++++|++++|+|||||||||+++++++..-.
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~------------------- 699 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM------------------- 699 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-------------------
Confidence 357777653211 1 235799999999999999999999999999999998753210
Q ss_pred HhccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 432 LREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 432 ~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
.+.-.+||++..-+ ++.+++ ....++.+ .+..+-..+|+|++|+..
T Consensus 700 -aq~g~~vpa~~~~i--~~~d~i---------------~~~ig~~d----------------~l~~~~stfs~em~~~~~ 745 (918)
T 3thx_B 700 -AQIGSYVPAEEATI--GIVDGI---------------FTRMGAAD----------------NIYKGRSTFMEELTDTAE 745 (918)
T ss_dssp -HHHTCCBSSSEEEE--ECCSEE---------------EEEC--------------------------CCHHHHHHHHHH
T ss_pred -hhcCccccchhhhh--hHHHHH---------------HHhCChHH----------------HHHHhHHHhhHHHHHHHH
Confidence 01112333322100 000011 00111111 111223478999999999
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHH-HHHHHHh--CCcEEEEEccChhHHhhcCe
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQ-KSLYNLM--KGKTVIAIAHRLSTISAMDR 568 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~-~~i~~~~--~~~t~i~itH~l~~~~~~d~ 568 (604)
++|+ +.+|+++||||||+|+|+.....+. ..++.+. .++|+|++||+++..+.+|+
T Consensus 746 il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~ 804 (918)
T 3thx_B 746 IIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKN 804 (918)
T ss_dssp HHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHH
T ss_pred HHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhh
Confidence 9999 8999999999999999999988887 4555542 48999999999988776654
No 118
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.69 E-value=2.5e-19 Score=183.24 Aligned_cols=130 Identities=12% Similarity=0.051 Sum_probs=95.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCC---
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD--- 460 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~--- 460 (604)
+++.+++|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++|+.+.++|+.++.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l 92 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKL 92 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccch
Confidence 357899999999999999999999999764 2 0 1 4456677999999999999999875321
Q ss_pred CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccc------cccCCCCCChhHHHHHHHH--HHHccCCCeEEEeccCCCC
Q psy13349 461 ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAH------VGEHGIKLSGGQRQRIAIA--RVILKNAPILLLDEATSAL 532 (604)
Q Consensus 461 ~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~------v~e~g~~LSgGq~QrialA--Rall~~p~ililDE~ts~L 532 (604)
.+......+.....+.+++..+++ |++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++
T Consensus 93 ~~~~g~p~a~d~~~l~~~l~~l~~-----g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~l 165 (290)
T 1odf_A 93 LQGRGLPGTHDMKLLQEVLNTIFN-----NNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGF 165 (290)
T ss_dssp GSSSCSTTSBCHHHHHHHHHHHTC-----------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTC
T ss_pred hhhccCcchhHHHHHHHHHHHhhc-----cCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccC
Confidence 000000111223356778888888 87764 4556789999999999998 666 99999999999999
Q ss_pred CHHH
Q psy13349 533 DSEA 536 (604)
Q Consensus 533 D~~~ 536 (604)
|+++
T Consensus 166 d~~~ 169 (290)
T 1odf_A 166 NPIL 169 (290)
T ss_dssp CCCC
T ss_pred Cccc
Confidence 9864
No 119
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=99.66 E-value=1.3e-17 Score=163.66 Aligned_cols=144 Identities=15% Similarity=0.146 Sum_probs=104.1
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cH----HHH
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI--KYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SI----RDN 453 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti----~eN 453 (604)
-..++|++++|+||||||||||+++|+|+++| ..|+|.+++.+.+. ..++.++|++|++..|.. ++ .||
T Consensus 11 ~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E~ 86 (219)
T 1s96_A 11 HHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLEH 86 (219)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEEE
T ss_pred ccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHHH
Confidence 35789999999999999999999999999986 68999998866542 235689999999988764 44 344
Q ss_pred HhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCC
Q psy13349 454 ILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533 (604)
Q Consensus 454 i~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD 533 (604)
+.+... +.|-.+++ ++..+..++++||| ||
T Consensus 87 ~~~~~~------------------------------------------~yg~~~~~---v~~~l~~G~illLD-----LD 116 (219)
T 1s96_A 87 AEVFGN------------------------------------------YYGTSREA---IEQVLATGVDVFLD-----ID 116 (219)
T ss_dssp EEETTE------------------------------------------EEEEEHHH---HHHHHTTTCEEEEE-----CC
T ss_pred HHHHhc------------------------------------------cCCCCHHH---HHHHHhcCCeEEEE-----EC
Confidence 433210 00000111 34445567999999 99
Q ss_pred HHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEeCCEEeEecChhHHhhc
Q psy13349 534 SEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 534 ~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~~g~~~~l~~~ 589 (604)
+.+...+.+.+. +++|++++||+++.++. |+ +++| .++.+++.++
T Consensus 117 ~~~~~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 117 WQGAQQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp HHHHHHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred HHHHHHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 999999998875 57899999999998776 43 6667 6777777643
No 120
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=99.65 E-value=2.8e-17 Score=175.14 Aligned_cols=186 Identities=12% Similarity=0.181 Sum_probs=116.5
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccc
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEK--IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQI 436 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~--~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i 436 (604)
.+++++ ++.|++ .+ |+++||++++|++ +||+||||||||||+|+|+|+. ++|.++...++...++.+
T Consensus 16 ~l~~~~-~~~y~~-~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~~i 84 (427)
T 2qag_B 16 TVPLAG-HVGFDS-LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQSN 84 (427)
T ss_dssp -CCCCC-CC-CC---C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEEEE
T ss_pred eEEEee-EEEECC-ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEeeE
Confidence 456666 788865 45 9999999999999 9999999999999999999984 455555444444456789
Q ss_pred eEEcccCcCCc-ccHHHHHhcCCCCCCHHHHHHHH-H--HchHHHHHHHhhhhhh--cCCCccc----c---ccCCCCCC
Q psy13349 437 GMVTQDTSLLH-RSIRDNILYGRPDASECELFNAA-K--CAEADIFIKSLTDEHG--RKGYDAH----V---GEHGIKLS 503 (604)
Q Consensus 437 ~~v~Q~~~lf~-~ti~eNi~~g~~~~~~~~i~~a~-~--~~~~~~~i~~lp~~~~--~~g~~t~----v---~e~g~~LS 503 (604)
++++|++.++. .|+.||+.+|.. .+.+.-+... + .....+++...-.... ...-|+. + -+.+..|+
T Consensus 85 ~~v~Q~~~l~~~ltv~D~~~~g~~-~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l~ 163 (427)
T 2qag_B 85 TYDLQESNVRLKLTIVSTVGFGDQ-INKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSLK 163 (427)
T ss_dssp EEEEEC--CEEEEEEEEEECCCC--CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---C
T ss_pred EEEeecCccccccchhhhhhhhhc-cccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCCC
Confidence 99999998874 599999999863 3332211111 0 0112223322110000 0011222 1 23445677
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHH-Hh-CCcEEEEEccC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN-LM-KGKTVIAIAHR 559 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~-~~-~~~t~i~itH~ 559 (604)
..+ +.++++|-.+++++++||||..|.+.....+.+.+++ +. .+.+++.++.+
T Consensus 164 ~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 164 SLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp HHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred HHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 666 8999999999999999999999999888888888876 44 47788888864
No 121
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=99.64 E-value=4.1e-17 Score=187.64 Aligned_cols=163 Identities=15% Similarity=0.134 Sum_probs=108.2
Q ss_pred ceEEEEEEEEEeC------CCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEEECCEeCCCCCHH
Q psy13349 358 GKIFFKNVSFSYD------QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-KYGEILIDGQNISNVSQE 430 (604)
Q Consensus 358 ~~i~~~~vsf~y~------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~I~i~g~~~~~~~~~ 430 (604)
+.+++++. ++| +++.+++|+||+ ++|++++|+||||||||||+++++|+..+ +.|. .+..
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa---- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA---- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS----
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch----
Confidence 34777765 222 235689999999 99999999999999999999999997432 2221 1111
Q ss_pred HHhccceEEcccCcCCcc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHH
Q psy13349 431 SLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQR 509 (604)
Q Consensus 431 ~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qr 509 (604)
-+..+++++| +|.. ++.||+.. |. ..+|+|+++
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~---------------------------------~~--------stf~~e~~~- 676 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLAS---------------------------------GR--------STFMVEMTE- 676 (800)
T ss_dssp -SEEEECCCCE---EEEEEC----------------------------------------------------CHHHHHH-
T ss_pred -hcccceeHHH---HHhhCCHHHHHHh---------------------------------hh--------hhhhHHHHH-
Confidence 1234566555 3432 33333321 11 135666654
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHH-HHHHHHHh--CCcEEEEEccChhHHhhcCeEEEEeCCEEeE
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAI-QKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i-~~~i~~~~--~~~t~i~itH~l~~~~~~d~i~vl~~G~iv~ 579 (604)
++.+...+.+|+++||||||+|+|+.....+ .+.++.+. .++|+|++||+.+....||++..+++|++..
T Consensus 677 ~~~il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 677 TANILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEE
T ss_pred HHHHHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEE
Confidence 5555556899999999999999998776665 55555553 3789999999999888888877777777654
No 122
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=99.64 E-value=2.6e-18 Score=178.31 Aligned_cols=155 Identities=18% Similarity=0.211 Sum_probs=111.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC--------CCCccEEEECCEeCCCCC---------------HHHHhccceEE---
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFY--------DIKYGEILIDGQNISNVS---------------QESLREQIGMV--- 439 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~--------~~~~G~I~i~g~~~~~~~---------------~~~~r~~i~~v--- 439 (604)
=++++|+|+||||||||+|.|+|.. .|+.|+|.+||.++...+ ..++++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3689999999999999999999998 789999999999987653 34677789988
Q ss_pred cccCcC-CcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccccc-----CCCCCChhHHHHHHHH
Q psy13349 440 TQDTSL-LHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGE-----HGIKLSGGQRQRIAIA 513 (604)
Q Consensus 440 ~Q~~~l-f~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e-----~g~~LSgGq~QrialA 513 (604)
+|++.+ |+.++.||..++.|. .+....... .+.-...+ ..+.-+.++- .-.++|+||+||...+
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~----~~~~~~~~~--~~~~~~~~----l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad 153 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPG----PIIQTFFSH--EVLCQRYL----LDGVIALVDAVHADEQMNQFTIAQSQVGYAD 153 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHH----HHHHHHHHS--HHHHHHEE----EEEEEEEEETTTHHHHHHHCHHHHHHHHTCS
T ss_pred HhcCCCCCCEEEEeCCCCCCHH----HHHHHHhcC--ccccCeEE----ECCEEEEEEHHHHHHHHhhchHHHHHHHhCC
Confidence 788764 577999999887652 222111000 00000000 0011122221 1125899999999999
Q ss_pred HHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy13349 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561 (604)
Q Consensus 514 Rall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~ 561 (604)
|+++.+|+++ ||| +.+.+.+++..++.|++++||+..
T Consensus 154 ~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 154 RILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp EEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred EEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 9999999987 998 677788877777899999999753
No 123
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=99.62 E-value=5.8e-16 Score=157.50 Aligned_cols=151 Identities=15% Similarity=0.122 Sum_probs=98.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHh-cCCCC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNIL-YGRPD 460 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~-~g~~~ 460 (604)
.+++|++++|+||||||||||++.+++... .|++. .|.+... +..+.|++.+... ..+.+++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 488999999999999999999999998654 57663 4543311 2357777665432 22322221 221 1
Q ss_pred CCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC--CCCHHHH-
Q psy13349 461 ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS--ALDSEAE- 537 (604)
Q Consensus 461 ~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts--~LD~~~~- 537 (604)
.+.++.. +..+.+ ++....+.....||+||+|++ |+++++|+++|+||||+ ++|+.+.
T Consensus 94 ~~~~~~~---------~~~~~l-------~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~ 154 (279)
T 1nlf_A 94 LSAEERQ---------AVADGL-------LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASG 154 (279)
T ss_dssp SCHHHHH---------HHHHHE-------EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHH
T ss_pred cChhhhh---------hccCce-------EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchH
Confidence 2222111 111221 333344556778999998865 78899999999999999 9998544
Q ss_pred --HHHHHHHHHHh--CCcEEEEEccChhHH
Q psy13349 538 --IAIQKSLYNLM--KGKTVIAIAHRLSTI 563 (604)
Q Consensus 538 --~~i~~~i~~~~--~~~t~i~itH~l~~~ 563 (604)
..+.+.|.++. .++|+|+++|.....
T Consensus 155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77777777763 389999999988654
No 124
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=99.61 E-value=8e-16 Score=149.94 Aligned_cols=152 Identities=17% Similarity=0.135 Sum_probs=97.8
Q ss_pred Cceeeecce-EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHH
Q psy13349 373 HLIINNLSL-TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIR 451 (604)
Q Consensus 373 ~~~l~~isl-~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~ 451 (604)
.+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++..+ ..+...++
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~------------------ 63 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLV------------------ 63 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHH------------------
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHH------------------
Confidence 456777765 799999999999999999999999999 3333444444321 11222221
Q ss_pred HHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChh--HHHHHHHHHHHccC-CCeEEEecc
Q psy13349 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG--QRQRIAIARVILKN-APILLLDEA 528 (604)
Q Consensus 452 eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgG--q~QrialARall~~-p~ililDE~ 528 (604)
+.... ...+.++ +.+++. + ...|++ |+|+++.+|+++++ |+++++|||
T Consensus 64 ~~~~~--~~~~~~~------------~~~~~~-----------~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~ 114 (220)
T 2cvh_A 64 QMAET--RGLNPEE------------ALSRFI-----------L----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSI 114 (220)
T ss_dssp HHHHT--TTCCHHH------------HHHHEE-----------E----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECC
T ss_pred HHHHh--cCCChHH------------HhhcEE-----------E----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCc
Confidence 11110 0011111 111111 1 123344 47899999999986 999999999
Q ss_pred CCCCCHHHH--------HHHHHHHHHHhC--CcEEEEEccChh-------------HHh-hcCeEEEEeCC
Q psy13349 529 TSALDSEAE--------IAIQKSLYNLMK--GKTVIAIAHRLS-------------TIS-AMDRLIVLDNG 575 (604)
Q Consensus 529 ts~LD~~~~--------~~i~~~i~~~~~--~~t~i~itH~l~-------------~~~-~~d~i~vl~~G 575 (604)
|+.+|+..+ ..+.+.++++.+ ++|+|+++|... .++ .||+|++|++.
T Consensus 115 ~~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 115 TAHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 999998432 345555665542 789999999865 343 58999999754
No 125
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.61 E-value=1.1e-18 Score=170.00 Aligned_cols=120 Identities=18% Similarity=0.154 Sum_probs=90.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcC-CCCC
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG-RPDA 461 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g-~~~~ 461 (604)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+||.+.++.+..+|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 4789999999999999999999999999876 4 257888888887777777775321 1111
Q ss_pred CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH-HHHccCCCeEEEeccC
Q psy13349 462 SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA-RVILKNAPILLLDEAT 529 (604)
Q Consensus 462 ~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA-Rall~~p~ililDE~t 529 (604)
..+.....+.+++..++.. ..+++.+.+++..+|+||+||+++| |+++.+++++++|||.
T Consensus 80 -----~~~~~~~~~~~~l~~l~~~---~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 80 -----PETFDFEGFQRLCHALKHQ---ERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp -----GGGBCHHHHHHHHHHHHHC---SCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred -----CchhhHHHHHHHHHHHhcC---CceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0111122344556666651 1377788999999999999999998 9999999999999984
No 126
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=99.61 E-value=8.1e-18 Score=160.81 Aligned_cols=163 Identities=15% Similarity=0.060 Sum_probs=99.6
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDA 461 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~ 461 (604)
.+++|++++|+|||||||||++++|+|. |+.|.|.++|.++.... ..++.++|++|++. ...|+.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~--~~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYI--KHGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTC--CSSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhh--hcccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 78899999997653221 11345788888765 3457888875421
Q ss_pred CHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc--ccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHH
Q psy13349 462 SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV--GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIA 539 (604)
Q Consensus 462 ~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v--~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~ 539 (604)
... .+ .+....++.... ..+++..- +.....+|+|++||+++||++.++|+++ +|++..+.
T Consensus 77 ---~~~--~~-~~~~~~~~~~~~---~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~ 139 (191)
T 1zp6_A 77 ---GRY--AK-EGYFVILDGVVR---PDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVAD 139 (191)
T ss_dssp ---HHH--HH-TSCEEEECSCCC---TTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHH
T ss_pred ---HHH--hc-cCCeEEEeccCc---HHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHH
Confidence 000 00 000000000000 00111110 2233579999999999999999999887 58887777
Q ss_pred HHHHHHHHhCCcEEEEEccChhHHhhcCeE
Q psy13349 540 IQKSLYNLMKGKTVIAIAHRLSTISAMDRL 569 (604)
Q Consensus 540 i~~~i~~~~~~~t~i~itH~l~~~~~~d~i 569 (604)
+.+.+..+.....+++.|++.+.-+.+|+|
T Consensus 140 ~~~~~~~l~~~~~~~i~t~~~~~~~~~~~i 169 (191)
T 1zp6_A 140 LHSQFADLGAFEHHVLPVSGKDTDQALQSA 169 (191)
T ss_dssp HHHHTTCCGGGGGGEEECTTCCTTTTTTTT
T ss_pred HHHHHhccCcccccEEECCCCCHHHHHHHH
Confidence 777665443212334445443333334443
No 127
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=99.54 E-value=1.8e-18 Score=165.47 Aligned_cols=162 Identities=15% Similarity=0.014 Sum_probs=106.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCC-cccHHHHHhcCCCCCCHH
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASEC 464 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~g~~~~~~~ 464 (604)
|++++|+|||||||||++++|++ |.+|+++++|.++... ...++++|+...+ ..|+++|+.+.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~------- 65 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDL------- 65 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHH-------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHH-------
Confidence 78999999999999999999998 6789999998654321 2467777766433 33677776431
Q ss_pred HHHHHHHHchHHHHHHHhhhhhhcCCCcccc----cc----CCCCC--ChhHHHHHHHHH------HHccCCCeEEEecc
Q psy13349 465 ELFNAAKCAEADIFIKSLTDEHGRKGYDAHV----GE----HGIKL--SGGQRQRIAIAR------VILKNAPILLLDEA 528 (604)
Q Consensus 465 ~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v----~e----~g~~L--SgGq~QrialAR------all~~p~ililDE~ 528 (604)
++ .+.. . |.+..+ +. .-..+ |+|++|++.++. +++++|+...+|+
T Consensus 66 -----~~-----~~~~---~-----~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~- 126 (189)
T 2bdt_A 66 -----TV-----NFLL---A-----QNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE- 126 (189)
T ss_dssp -----HH-----HHHH---T-----TCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC---
T ss_pred -----HH-----HHHh---c-----CCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc-
Confidence 00 0000 0 111111 10 00124 888888888888 8888998888884
Q ss_pred CCCCCHHHHHHHHHHHHHHh-CCcEEEEEccC-hhHHhh-cCeEEEEeCCEEeEecChhHHh
Q psy13349 529 TSALDSEAEIAIQKSLYNLM-KGKTVIAIAHR-LSTISA-MDRLIVLDNGCVAEEGSHLDLL 587 (604)
Q Consensus 529 ts~LD~~~~~~i~~~i~~~~-~~~t~i~itH~-l~~~~~-~d~i~vl~~G~iv~~g~~~~l~ 587 (604)
++|+..... ++.+.... .+.|+|.+||. ++.++. ||+|+ ++|+++..|+++-|-
T Consensus 127 --~ld~~~~~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 127 --QMGERCLEL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp ----CGGGGHH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred --cCCHHHHHH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 799987777 77777664 35799999999 888766 89998 999999999876653
No 128
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=99.53 E-value=2.7e-17 Score=171.89 Aligned_cols=181 Identities=15% Similarity=0.147 Sum_probs=119.2
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHHhcc
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ----ESLREQ 435 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~----~~~r~~ 435 (604)
++.+|+++.|+. ..+|+++||++++|++++|+||||||||||+++|+|++.|++|+|.+.|.+...... ...|..
T Consensus 30 ie~~~~~~~~~~-~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~~ 108 (337)
T 2qm8_A 30 AESRRADHRAAV-RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKTR 108 (337)
T ss_dssp HTCSSHHHHHHH-HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGGG
T ss_pred HeeCCcccccCh-HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhhh
Confidence 445566666643 468999999999999999999999999999999999999999999999988754321 235678
Q ss_pred ceEEcccCcCCcc-------------cHHHHHhc----CC-------CCC--CHHHHHHHHHH-------------chHH
Q psy13349 436 IGMVTQDTSLLHR-------------SIRDNILY----GR-------PDA--SECELFNAAKC-------------AEAD 476 (604)
Q Consensus 436 i~~v~Q~~~lf~~-------------ti~eNi~~----g~-------~~~--~~~~i~~a~~~-------------~~~~ 476 (604)
+++++|++.+|.. +.+|.+.. +. |.. ++..+.+.+.. ..+.
T Consensus 109 i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~ 188 (337)
T 2qm8_A 109 MARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIK 188 (337)
T ss_dssp STTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CC
T ss_pred heeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHH
Confidence 9999999988852 12332210 00 000 11111100000 0000
Q ss_pred HHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHcc------CCCeEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy13349 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK------NAPILLLDEATSALDSEAEIAIQKSLYNLM 548 (604)
Q Consensus 477 ~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~------~p~ililDE~ts~LD~~~~~~i~~~i~~~~ 548 (604)
..+.+.|+.+..+..|- .....+|+|++|+++.|++++. +|+++. ||++|.+....+++.|.+..
T Consensus 189 ~~i~~~~~ivvlNK~Dl---~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 189 KGIFELADMIAVNKADD---GDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp TTHHHHCSEEEEECCST---TCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHhccccEEEEEchhc---cCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 00112232111111221 0123579999999999999998 688876 99999999999999987654
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=99.51 E-value=1.6e-14 Score=142.85 Aligned_cols=153 Identities=20% Similarity=0.281 Sum_probs=92.2
Q ss_pred eeeec-ceEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCC-----CccEEEECCEeCCCC-CHHHHhccceEEcccCcC
Q psy13349 375 IINNL-SLTIQPGEKIGLVGRSGAGKSTINNLLLR--FYDI-----KYGEILIDGQNISNV-SQESLREQIGMVTQDTSL 445 (604)
Q Consensus 375 ~l~~i-sl~i~~G~~~~ivG~sGsGKSTl~~ll~~--~~~~-----~~G~I~i~g~~~~~~-~~~~~r~~i~~v~Q~~~l 445 (604)
.|+.+ .=-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+.... ....+++.+++.+|+
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~--- 88 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD--- 88 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH---
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH---
Confidence 34443 23589999999999999999999999999 5555 578888888652110 122344456665543
Q ss_pred CcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc--cCCCeE
Q psy13349 446 LHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL--KNAPIL 523 (604)
Q Consensus 446 f~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall--~~p~il 523 (604)
+.+|+.+..+ .+.++..+. +.-+++++ .+|+++
T Consensus 89 ----~~~~~~~~~~-~~~~~~~~~----------------------------------------~~~~~~~~~~~~~~ll 123 (243)
T 1n0w_A 89 ----VLDNVAYARA-FNTDHQTQL----------------------------------------LYQASAMMVESRYALL 123 (243)
T ss_dssp ----HHHTEEEEEC-CSHHHHHHH----------------------------------------HHHHHHHHHHSCEEEE
T ss_pred ----HhhCeEEEec-CCHHHHHHH----------------------------------------HHHHHHHHhcCCceEE
Confidence 4555544322 122221111 11112222 589999
Q ss_pred EEeccCCCCCHH-------HH-----HHHHHHHHHHh--CCcEEEEEccChhHHh--------------------hcCeE
Q psy13349 524 LLDEATSALDSE-------AE-----IAIQKSLYNLM--KGKTVIAIAHRLSTIS--------------------AMDRL 569 (604)
Q Consensus 524 ilDE~ts~LD~~-------~~-----~~i~~~i~~~~--~~~t~i~itH~l~~~~--------------------~~d~i 569 (604)
++||||+.+|+. ++ ..+.+.+.+.. .++|+|+++|...... .||.+
T Consensus 124 iiD~~~~~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~v 203 (243)
T 1n0w_A 124 IVDSATALYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTR 203 (243)
T ss_dssp EEETSSGGGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEE
T ss_pred EEeCchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEE
Confidence 999999999986 32 33444454443 3899999999654322 48999
Q ss_pred EEEeCC
Q psy13349 570 IVLDNG 575 (604)
Q Consensus 570 ~vl~~G 575 (604)
++|++|
T Consensus 204 i~l~~~ 209 (243)
T 1n0w_A 204 LYLRKG 209 (243)
T ss_dssp EEEEEC
T ss_pred EEEEEc
Confidence 999865
No 130
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=99.49 E-value=1.5e-14 Score=156.18 Aligned_cols=150 Identities=17% Similarity=0.209 Sum_probs=103.2
Q ss_pred eeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC----HHH--HhccceEEcccCcCC-cc
Q psy13349 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS----QES--LREQIGMVTQDTSLL-HR 448 (604)
Q Consensus 376 l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~----~~~--~r~~i~~v~Q~~~lf-~~ 448 (604)
-+++||++++|++++|+|+||||||||+++|+|++.|++|+|.++|.|..... ... .|+.+++++|++.++ ..
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36899999999999999999999999999999999999999999887764421 122 367899999998766 44
Q ss_pred cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCC------CCCChhHHHHHHHHHHHccC-CC
Q psy13349 449 SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG------IKLSGGQRQRIAIARVILKN-AP 521 (604)
Q Consensus 449 ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g------~~LSgGq~QrialARall~~-p~ 521 (604)
|+++|+.++... |+|..+=+.. .++-.--+|++.++|++..+ |+
T Consensus 363 tV~e~l~~a~~~-----------------------------~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~ 413 (503)
T 2yhs_A 363 VIFDAIQAAKAR-----------------------------NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPH 413 (503)
T ss_dssp HHHHHHHHHHHT-----------------------------TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSS
T ss_pred HHHHHHHHHHhc-----------------------------CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCC
Confidence 899998764210 2221111100 11222235889999987644 53
Q ss_pred -eEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEcc
Q psy13349 522 -ILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAH 558 (604)
Q Consensus 522 -ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH 558 (604)
+++..+||++.|.... .+.+.+. -+.|.+++||
T Consensus 414 evLLvLDattGq~al~~---ak~f~~~-~~itgvIlTK 447 (503)
T 2yhs_A 414 EVMLTIDASTGQNAVSQ---AKLFHEA-VGLTGITLTK 447 (503)
T ss_dssp EEEEEEEGGGTHHHHHH---HHHHHHH-TCCSEEEEEC
T ss_pred eeEEEecCcccHHHHHH---HHHHHhh-cCCCEEEEEc
Confidence 5555558887555432 2223221 3689999999
No 131
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=99.47 E-value=2.1e-15 Score=150.50 Aligned_cols=149 Identities=17% Similarity=0.160 Sum_probs=96.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---cCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHHHHHhcC---
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLL---RFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYG--- 457 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g--- 457 (604)
++++++|+||||||||||+++|+ |+..|+.|+|.++|.+.. ..+...+..++|++.+++. ++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988876532 1344556777888776654 888888541
Q ss_pred ----------CCCCCHHHHHHHHHHchHHHHH-HHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHH-ccCCCeEEE
Q psy13349 458 ----------RPDASECELFNAAKCAEADIFI-KSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI-LKNAPILLL 525 (604)
Q Consensus 458 ----------~~~~~~~~i~~a~~~~~~~~~i-~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARal-l~~p~ilil 525 (604)
.| .+.++.....+....+-.+ -..|... .++-........||| |+ ||+ +.+|++++|
T Consensus 102 ~~~~~~il~g~~-~~~~~~~~l~~~~~~~~vi~L~~~~~~---~l~r~~~r~~~~lSg----rv---~al~~~~P~~lll 170 (246)
T 2bbw_A 102 RRGQHWLLDGFP-RTLGQAEALDKICEVDLVISLNIPFET---LKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGI 170 (246)
T ss_dssp CTTSCEEEESCC-CSHHHHHHHHTTCCCCEEEEEECCHHH---HHHHHHTEEEETTTT----EE---EETTTSCCSSTTB
T ss_pred cCCCeEEEECCC-CCHHHHHHHHhhcCCCEEEEEECCHHH---HHHHHHcCCCcCCCC----Cc---cccccCCCccccc
Confidence 11 1111111111000000000 0000000 011111233457898 66 888 999999999
Q ss_pred e----ccCCCCCHHHHHHHHHHHHHHh
Q psy13349 526 D----EATSALDSEAEIAIQKSLYNLM 548 (604)
Q Consensus 526 D----E~ts~LD~~~~~~i~~~i~~~~ 548 (604)
| |||+++|+.+++.+.+.+.++.
T Consensus 171 D~~~~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 171 DDVTGEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CTTTCCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccccccCCCCcHHHHHHHHHHHH
Confidence 9 9999999999999999887764
No 132
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=99.46 E-value=3.3e-15 Score=138.82 Aligned_cols=87 Identities=15% Similarity=0.162 Sum_probs=71.2
Q ss_pred EEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEccc
Q psy13349 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQD 442 (604)
Q Consensus 363 ~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~ 442 (604)
+|+++.|++ +.+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+. ...+ .+++|+
T Consensus 11 ~~~~~~~g~-~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~--~~~~---~~~~q~ 83 (158)
T 1htw_A 11 EFSMLRFGK-KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEE--YNIA---GKMIYH 83 (158)
T ss_dssp HHHHHHHHH-HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEE--EEET---TEEEEE
T ss_pred HHHHHHHHH-HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeee--ccCC---Ccceec
Confidence 345566643 46899999999999999999999999999999999999 9999999999877421 1112 279999
Q ss_pred CcCCcccHHHHHhc
Q psy13349 443 TSLLHRSIRDNILY 456 (604)
Q Consensus 443 ~~lf~~ti~eNi~~ 456 (604)
+.+|.-|+.||+.+
T Consensus 84 ~~l~~ltv~e~l~~ 97 (158)
T 1htw_A 84 FDLYRLADPEELEF 97 (158)
T ss_dssp EECTTCSCTTHHHH
T ss_pred cccccCCcHHHHHH
Confidence 98886699999843
No 133
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=99.44 E-value=2e-16 Score=169.32 Aligned_cols=129 Identities=18% Similarity=0.173 Sum_probs=88.0
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC----CHHHHhccceEEc---------
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV----SQESLREQIGMVT--------- 440 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~----~~~~~r~~i~~v~--------- 440 (604)
.+|+++ +. ++|+.++|+||||||||||+++|+|+++|++|+|.++|.++... +...+++.+++.+
T Consensus 157 ~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lr 234 (418)
T 1p9r_A 157 DNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILR 234 (418)
T ss_dssp HHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGG
T ss_pred HHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhc
Confidence 367777 43 89999999999999999999999999999999999998877421 1223445566544
Q ss_pred ccCcCC--c-----ccHHHHHhcCCC--------CCC-HHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh
Q psy13349 441 QDTSLL--H-----RSIRDNILYGRP--------DAS-ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504 (604)
Q Consensus 441 Q~~~lf--~-----~ti~eNi~~g~~--------~~~-~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg 504 (604)
|+|.++ . .|+.+|+.++.. ... ..+....+... |++... ...+|||
T Consensus 235 q~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~l----------------gl~~~~--~~~~LSg 296 (418)
T 1p9r_A 235 QDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDM----------------GIEPFL--ISSSLLG 296 (418)
T ss_dssp GCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHH----------------TCCHHH--HHHHEEE
T ss_pred cCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHc----------------CCcHHH--HHHHHHH
Confidence 888753 2 378888765321 111 11111111111 333221 2347999
Q ss_pred hHHHHHHHHHHHccCCCeEE
Q psy13349 505 GQRQRIAIARVILKNAPILL 524 (604)
Q Consensus 505 Gq~QrialARall~~p~ili 524 (604)
||+|| |||+++.+|++..
T Consensus 297 g~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 297 VLAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEEE--EEEEECTTTCEEE
T ss_pred HHHHH--hhhhhcCCCCccC
Confidence 99999 9999999999876
No 134
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=99.44 E-value=5.8e-16 Score=170.03 Aligned_cols=177 Identities=16% Similarity=0.141 Sum_probs=119.6
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCc-ccHHH
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLH-RSIRD 452 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~e 452 (604)
++++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. ++.++++.|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 47889999999999999999999999999999999999999999998865222221 346778887765222 26777
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHch-------------HHHHHHHhhhhhhcCCCccccc-------cCCCCCC
Q psy13349 453 NILYG---RP------DASECELFNAAKCAE-------------ADIFIKSLTDEHGRKGYDAHVG-------EHGIKLS 503 (604)
Q Consensus 453 Ni~~g---~~------~~~~~~i~~a~~~~~-------------~~~~i~~lp~~~~~~g~~t~v~-------e~g~~LS 503 (604)
++... +| +..+.|...+.+.+. ..+.+.++... +.|+...+. .....+|
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~--~~~v~~~l~~~l~~vi~~~~~~s 402 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESE--PLKVPRSMLQFLDIALVQTMWVR 402 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHST--TTCCCGGGGGGCCEEEEEEEEES
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhc--ccccHHHHHhhccEEEEEEEEEe
Confidence 76433 23 344455544444321 33444443221 113322221 1234679
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh-CCcEEEE--EccChhHHhh-cC
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIA--IAHRLSTISA-MD 567 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~-~~~t~i~--itH~l~~~~~-~d 567 (604)
|||+||.++|. + | |++||+.+...+.+.+.++. .++|+++ +||+++.+.. |+
T Consensus 403 ~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 403 GNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 99999987752 1 7 99999988877777766554 3688875 8999998754 54
No 135
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=99.43 E-value=1.7e-13 Score=145.04 Aligned_cols=74 Identities=26% Similarity=0.362 Sum_probs=67.7
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEE
Q psy13349 500 IKLSGGQRQRI------AIARVILKN-APILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572 (604)
Q Consensus 500 ~~LSgGq~Qri------alARall~~-p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl 572 (604)
..|||||+||+ ++|||+..+ |+++||||||++||+.+...+.+.+.+..+++++|+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 58999999987 678999999 99999999999999999999999998875567999999999877779999999
Q ss_pred e
Q psy13349 573 D 573 (604)
Q Consensus 573 ~ 573 (604)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
No 136
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=99.43 E-value=1.4e-13 Score=142.82 Aligned_cols=161 Identities=16% Similarity=0.089 Sum_probs=108.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHH----HHhcc--ceEEcccCcCCcc-cHHHHH
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE----SLREQ--IGMVTQDTSLLHR-SIRDNI 454 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~----~~r~~--i~~v~Q~~~lf~~-ti~eNi 454 (604)
..++|++++++|||||||||+++.|+|++.|++|+|.++|.|+...... .++++ +.+++|+..+++. |++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998766532 23444 5599999888855 899998
Q ss_pred hcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc-ccCCC-C-CChhHHHHHHHHHHHccCCCeEEEeccCCC
Q psy13349 455 LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV-GEHGI-K-LSGGQRQRIAIARVILKNAPILLLDEATSA 531 (604)
Q Consensus 455 ~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v-~e~g~-~-LSgGq~QrialARall~~p~ililDE~ts~ 531 (604)
.++.. . ++|..+ ..-|. . -..=..+.-.++|++..++++++||.+|.
T Consensus 205 ~~~~~------------------------~-----~~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~- 254 (328)
T 3e70_C 205 QHAKA------------------------R-----GIDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG- 254 (328)
T ss_dssp HHHHH------------------------H-----TCSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-
T ss_pred HHHHh------------------------c-----cchhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH-
Confidence 65310 0 111111 00010 0 01112344458999999988999996665
Q ss_pred CCHHHHHHHHHHHHHHh--CCcEEEEEccChhH---------H-hhcCeEEEEeCCEEe
Q psy13349 532 LDSEAEIAIQKSLYNLM--KGKTVIAIAHRLST---------I-SAMDRLIVLDNGCVA 578 (604)
Q Consensus 532 LD~~~~~~i~~~i~~~~--~~~t~i~itH~l~~---------~-~~~d~i~vl~~G~iv 578 (604)
. .+.+.++... .+.|.|++||--.+ + ...-.|..+..|+-+
T Consensus 255 ~------~~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 255 N------AIVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp T------HHHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred H------HHHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 2 3333333332 37899999995432 1 123578888888765
No 137
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=99.42 E-value=9.9e-14 Score=144.96 Aligned_cols=122 Identities=16% Similarity=0.127 Sum_probs=82.4
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-CCccEEEEC-CEeCCCCCHHHHhccceEEcccCcCCcc-cHH
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-IKYGEILID-GQNISNVSQESLREQIGMVTQDTSLLHR-SIR 451 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~I~i~-g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~ 451 (604)
-++++++. .+|++++|+||||||||||+|+|+|... |..|+|.++ |.+.. ...+..+++++|++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 57777775 4899999999999999999999999999 999999987 75542 2345689999999998866 899
Q ss_pred HHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 452 eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
|+-. ...+.+++.+. .++.....|+....+..-.+|| ||+||++||++++
T Consensus 280 e~~l---~~l~~~e~~~~------------~~e~l~~~gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 280 EFGL---WHLEPEQITQG------------FVEFHDYLGHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp TCCC---CCCCHHHHHHT------------SGGGGGGTTCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred Hhhh---cCCCHHHHHHH------------HHHHHHHcCCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 8632 23344443221 1111122366655566667899 9999999999864
No 138
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.41 E-value=1.1e-13 Score=144.96 Aligned_cols=137 Identities=20% Similarity=0.277 Sum_probs=78.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhc-CCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCC-cccHHHHHhcCCCCCCHHH
Q psy13349 388 KIGLVGRSGAGKSTINNLLLR-FYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECE 465 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~-~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf-~~ti~eNi~~g~~~~~~~~ 465 (604)
.+.|+||+|+||||+++++++ ++.|+.|++.++|.+..... ..+..+++++|.+++. +.+- .+. .+.+.
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS--NRKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc--cccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 399999999999999999999 89999999999998765432 2367899999988653 1110 010 11111
Q ss_pred HHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHH
Q psy13349 466 LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545 (604)
Q Consensus 466 i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~ 545 (604)
+.+. +..+.. ..+++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+.
T Consensus 109 ~~~~---------i~~~~~---~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 109 IQEL---------LKEVAQ---MEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp HHHH---------HHHHTT---TTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred HHHH---------HHHHHH---hccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 2221 111111 00222222 5666 778999999999999 99999999999998
Q ss_pred HHhCCcEEEEEccChhH
Q psy13349 546 NLMKGKTVIAIAHRLST 562 (604)
Q Consensus 546 ~~~~~~t~i~itH~l~~ 562 (604)
+..+++++|++||+++.
T Consensus 160 ~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HSTTTEEEEEEESCSCS
T ss_pred hhcCCCEEEEEeCCHHH
Confidence 87778899999999764
No 139
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.5e-15 Score=154.09 Aligned_cols=144 Identities=17% Similarity=0.170 Sum_probs=105.3
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccC-cCCcc-cHH
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDT-SLLHR-SIR 451 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~-~lf~~-ti~ 451 (604)
.+++++++++++| ++|+||||||||||+++++|...+ |.|.++|.++......+.++.+++++|++ ..++. ++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4789999999999 999999999999999999999876 79999998887666666777899999986 34443 677
Q ss_pred HHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC-
Q psy13349 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS- 530 (604)
Q Consensus 452 eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts- 530 (604)
||+....+.....+.. ...+...+++ ..|||||+||..+++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~------~~~~~~~~~l----------------~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r 165 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG------ASVRVVNQLL----------------TEMDGLEARQQVFIMAATNRPDII--DPAILR 165 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHHH----------------HHHHTCCSTTCEEEEEEESCGGGS--CHHHHS
T ss_pred ehhhhhhcccCCCcch------HHHHHHHHHH----------------HhhhcccccCCEEEEeecCChhhC--CHhhcC
Confidence 8876543321111100 0011122222 268999999999999999999985 99974
Q ss_pred -----------CCCHHHHHHHHHHHH
Q psy13349 531 -----------ALDSEAEIAIQKSLY 545 (604)
Q Consensus 531 -----------~LD~~~~~~i~~~i~ 545 (604)
--|.+.+..|++.+.
T Consensus 166 ~gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 166 PGRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TTSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred cccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 346777777776653
No 140
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.38 E-value=1.6e-13 Score=129.90 Aligned_cols=111 Identities=19% Similarity=0.173 Sum_probs=75.6
Q ss_pred ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCC
Q psy13349 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRP 459 (604)
Q Consensus 380 sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~ 459 (604)
+|++++|+.++|+||+|||||||++++++.+.|.+|... .++ +..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~------------------~~~---------~~~-------- 76 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRG------------------YFF---------DTK-------- 76 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCC------------------CEE---------EHH--------
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeE------------------EEE---------EHH--------
Confidence 567788999999999999999999999999876666211 110 111
Q ss_pred CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC-CCCHHHHH
Q psy13349 460 DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS-ALDSEAEI 538 (604)
Q Consensus 460 ~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts-~LD~~~~~ 538 (604)
++.... ...... +- .. -+...+.+|++|+||||++ ++|+....
T Consensus 77 -----~~~~~~--------~~~~~~-----~~--------~~----------~~~~~~~~~~llilDE~~~~~~~~~~~~ 120 (180)
T 3ec2_A 77 -----DLIFRL--------KHLMDE-----GK--------DT----------KFLKTVLNSPVLVLDDLGSERLSDWQRE 120 (180)
T ss_dssp -----HHHHHH--------HHHHHH-----TC--------CS----------HHHHHHHTCSEEEEETCSSSCCCHHHHH
T ss_pred -----HHHHHH--------HHHhcC-----ch--------HH----------HHHHHhcCCCEEEEeCCCCCcCCHHHHH
Confidence 111100 001111 10 00 1122345999999999995 89999999
Q ss_pred HHHHHHHHHh-CCcEEEEEccChh
Q psy13349 539 AIQKSLYNLM-KGKTVIAIAHRLS 561 (604)
Q Consensus 539 ~i~~~i~~~~-~~~t~i~itH~l~ 561 (604)
.+.+.+.+.. +++++|++||...
T Consensus 121 ~l~~ll~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 121 LISYIITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCh
Confidence 9988887664 6899999999864
No 141
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=99.37 E-value=3.1e-13 Score=143.80 Aligned_cols=152 Identities=14% Similarity=0.242 Sum_probs=96.4
Q ss_pred eeeec-ceEEeCCcEEEEEcCCCCcHHHHHH--HHhcCCCCCcc-----EEEECCEeCCCCCH---HHHhccceEEcccC
Q psy13349 375 IINNL-SLTIQPGEKIGLVGRSGAGKSTINN--LLLRFYDIKYG-----EILIDGQNISNVSQ---ESLREQIGMVTQDT 443 (604)
Q Consensus 375 ~l~~i-sl~i~~G~~~~ivG~sGsGKSTl~~--ll~~~~~~~~G-----~I~i~g~~~~~~~~---~~~r~~i~~v~Q~~ 443 (604)
.|+.+ .=-|++|++++|+||||||||||++ ++.+..+++.| .+++++.+. .+. ..+++.+++.+|
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~--~~~~rl~~~a~~~gl~~~-- 241 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGT--FRPVRLVSIAQRFGLDPD-- 241 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC--CCHHHHHHHHHHTTCCHH--
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCc--cCHHHHHHHHHHcCCChH--
Confidence 44442 2368999999999999999999999 44577766444 888888652 222 233455665544
Q ss_pred cCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc--cCCC
Q psy13349 444 SLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL--KNAP 521 (604)
Q Consensus 444 ~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall--~~p~ 521 (604)
++.+|+.+..+. +.++. .+.+.-++.++ .+|+
T Consensus 242 -----~vleni~~~~~~-~~~~~----------------------------------------~~~l~~~~~~l~~~~~~ 275 (400)
T 3lda_A 242 -----DALNNVAYARAY-NADHQ----------------------------------------LRLLDAAAQMMSESRFS 275 (400)
T ss_dssp -----HHHHTEEEEECC-SHHHH----------------------------------------HHHHHHHHHHHHHSCEE
T ss_pred -----hHhhcEEEeccC-ChHHH----------------------------------------HHHHHHHHHHHHhcCCc
Confidence 566777665432 11111 11122122222 4699
Q ss_pred eEEEeccCCCCCHHHH------------HHHHHHHHHHh--CCcEEEEEccChh-------------------HHhh-cC
Q psy13349 522 ILLLDEATSALDSEAE------------IAIQKSLYNLM--KGKTVIAIAHRLS-------------------TISA-MD 567 (604)
Q Consensus 522 ililDE~ts~LD~~~~------------~~i~~~i~~~~--~~~t~i~itH~l~-------------------~~~~-~d 567 (604)
++++||||+.+|++.. ..+.+.|+++. .+.|+|+|+|... .++. +|
T Consensus 276 llVIDs~t~~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad 355 (400)
T 3lda_A 276 LIVVDSVMALYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSST 355 (400)
T ss_dssp EEEEETGGGGCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCS
T ss_pred eEEecchhhhCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcc
Confidence 9999999999997543 45666676654 3799999999832 2344 79
Q ss_pred eEEEEeCCE
Q psy13349 568 RLIVLDNGC 576 (604)
Q Consensus 568 ~i~vl~~G~ 576 (604)
.+++|++|+
T Consensus 356 ~vl~L~~~~ 364 (400)
T 3lda_A 356 TRLGFKKGK 364 (400)
T ss_dssp EEEEEEECS
T ss_pred eEEEEEecC
Confidence 999998763
No 142
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.36 E-value=5.8e-13 Score=122.45 Aligned_cols=91 Identities=20% Similarity=0.216 Sum_probs=69.7
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHH
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG--EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRD 452 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 452 (604)
+|+++ +|+.++|+||+|||||||++++++.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999886 47 555555332110
Q ss_pred HHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCC
Q psy13349 453 NILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532 (604)
Q Consensus 453 Ni~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~L 532 (604)
+++.+|++|++|||++ +
T Consensus 79 --------------------------------------------------------------~~~~~~~lLilDE~~~-~ 95 (149)
T 2kjq_A 79 --------------------------------------------------------------DAAFEAEYLAVDQVEK-L 95 (149)
T ss_dssp --------------------------------------------------------------GGGGGCSEEEEESTTC-C
T ss_pred --------------------------------------------------------------HHHhCCCEEEEeCccc-c
Confidence 2356899999999998 6
Q ss_pred CHHHHHHHHHHHHHHh-CCcE-EEEEccC
Q psy13349 533 DSEAEIAIQKSLYNLM-KGKT-VIAIAHR 559 (604)
Q Consensus 533 D~~~~~~i~~~i~~~~-~~~t-~i~itH~ 559 (604)
|...++.+.+.+.+.. ++++ +|++||+
T Consensus 96 ~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 96 GNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp CSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred ChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 6666888888887654 3677 7777775
No 143
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.33 E-value=1.7e-13 Score=140.94 Aligned_cols=115 Identities=17% Similarity=0.134 Sum_probs=77.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE---CCEeCCCCCHHHHhccceEEcccCcCC------cccHHH
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI---DGQNISNVSQESLREQIGMVTQDTSLL------HRSIRD 452 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i---~g~~~~~~~~~~~r~~i~~v~Q~~~lf------~~ti~e 452 (604)
++.+|++++++||||||||||+|+|+ +.+|++|+|.+ +|.++.........+.+++|+|+|.+. .-|+ |
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~~~~~~~~g~v~d~pg~~~~~l~~~lt~-e 238 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVRLIPFGKGSFVGDTPGFSKVEATMFVKP-R 238 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEEEEEETTTEEEESSCCCSSCCGGGTSCG-G
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEEEEEcCCCcEEEECcCcCcCcccccCCH-H
Confidence 45679999999999999999999999 99999999999 998876543211123699999999652 3478 8
Q ss_pred HH--hcCC------------C-CCCHHHHHHHHHHchHHH-HHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHH
Q psy13349 453 NI--LYGR------------P-DASECELFNAAKCAEADI-FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514 (604)
Q Consensus 453 Ni--~~g~------------~-~~~~~~i~~a~~~~~~~~-~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialAR 514 (604)
|+ .++. + ....+.+.++++..++.+ ...+.|. .|||.+++++.|||
T Consensus 239 ~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~----------------~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 239 EVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYLK----------------IIKVYLEEIKELCR 300 (302)
T ss_dssp GGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHHH----------------HTTCCCTTHHHHSS
T ss_pred HHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHHH----------------HHHHHHHHHHHHhc
Confidence 88 4430 1 112345666666666543 3343333 68998889999987
No 144
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=99.30 E-value=1.6e-14 Score=142.62 Aligned_cols=185 Identities=13% Similarity=0.150 Sum_probs=76.1
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh-cCCCCCccEEEECCEeCCCCCHH-HHhccceEEcccCcCCcc-cH
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL-RFYDIKYGEILIDGQNISNVSQE-SLREQIGMVTQDTSLLHR-SI 450 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~-~~~~~~~G~I~i~g~~~~~~~~~-~~r~~i~~v~Q~~~lf~~-ti 450 (604)
...+++||++++|++++|+||||||||||+++|+ |++++. .++.++..-.+. .-+..+.|.++++..|.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~-----~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNI-----VKSVSVTTRAARKGEKEGKDYYFVDREEFLRLCS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CE-----EECCCEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCc-----ccccccCCCCCCccccCCCeEEEecHHHhhhhhh
Confidence 4678999999999999999999999999999999 998431 122221111100 011234455555444422 22
Q ss_pred HHHHh---------cCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCCh--hHHHHH-HHH-HHHc
Q psy13349 451 RDNIL---------YGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG--GQRQRI-AIA-RVIL 517 (604)
Q Consensus 451 ~eNi~---------~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSg--Gq~Qri-alA-Rall 517 (604)
.+|+. ++.+. +++.++++. |....+.- .+.| .-+++. .-+ ..++
T Consensus 90 ~~~~~~~~~~~~~~~~~~~---~~i~~~~~~-----------------~~~vild~---~~~g~~~~~~~~~~~~~~v~v 146 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYGVPR---KNLEDNVDK-----------------GVSTLLVI---DWQGAFKFMEMMREHVVSIFI 146 (231)
T ss_dssp TTCEEEEEEETTEEEEEEC---TTHHHHHHH-----------------TCEEEEEC---CHHHHHHHHHHSGGGEEEEEE
T ss_pred cCceehhhhhccccCCCCH---HHHHHHHHc-----------------CCeEEEEc---CHHHHHHHHHhcCCCeEEEEE
Confidence 23322 22221 122222211 21111110 0111 113333 112 2446
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh------CCcEEEEEccChhHH-hhcCeEEEEeCCEEeEecChhHH
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLM------KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDL 586 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~~------~~~t~i~itH~l~~~-~~~d~i~vl~~G~iv~~g~~~~l 586 (604)
..|+..++||++++.|..+++.+.+.+.+.. +....+++.|+++.+ +..++++..++++...+++.+++
T Consensus 147 ~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~~ 222 (231)
T 3lnc_A 147 MPPSMEELRRRLCGRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLREL 222 (231)
T ss_dssp ECSCHHHHHHC--------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHHH
T ss_pred ECCcHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhhH
Confidence 7788888999999999988888877665432 134667777776643 34566655555554444444443
No 145
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.21 E-value=3.2e-12 Score=131.41 Aligned_cols=103 Identities=17% Similarity=0.225 Sum_probs=70.2
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE---CCEeCCCCCHHHHhccceEEcccCc-------------
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI---DGQNISNVSQESLREQIGMVTQDTS------------- 444 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i---~g~~~~~~~~~~~r~~i~~v~Q~~~------------- 444 (604)
|++.+|++++++||||||||||+|+|+|+..|++|+|.+ +|.++.........+.+++|+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 456789999999999999999999999999999999999 9988866542211246999999985
Q ss_pred ---CCcc-cHHHHHhcCCC---CCCHHHHHHHHHHchH-HHHHHHhhh
Q psy13349 445 ---LLHR-SIRDNILYGRP---DASECELFNAAKCAEA-DIFIKSLTD 484 (604)
Q Consensus 445 ---lf~~-ti~eNi~~g~~---~~~~~~i~~a~~~~~~-~~~i~~lp~ 484 (604)
+|+. |+ ||+.++.- ....+++.++++..++ .+...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 4644 78 99988521 1234568888888888 466666665
No 146
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=99.20 E-value=1.2e-11 Score=126.51 Aligned_cols=143 Identities=15% Similarity=0.094 Sum_probs=100.2
Q ss_pred EEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEE
Q psy13349 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMV 439 (604)
Q Consensus 360 i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v 439 (604)
+..+++++.|++. + ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|...- ...
T Consensus 77 ~~~~~l~~~~~~~-~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~--~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE-A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRP--AAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS-C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCH--HHH-------
T ss_pred HHHHHHHHHHCCC-C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccH--hHH-------
Confidence 4455666677532 2 678888 9999999999999999999999999999999999988765421 000
Q ss_pred cccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q psy13349 440 TQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN 519 (604)
Q Consensus 440 ~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~ 519 (604)
+ ++.... +. . |++-.-. +..-...+.+|.+++++...+
T Consensus 143 ------------~------------ql~~~~---------~~--~-----~l~~~~~--~~~~~p~~l~~~~l~~~~~~~ 180 (295)
T 1ls1_A 143 ------------E------------QLRLLG---------EK--V-----GVPVLEV--MDGESPESIRRRVEEKARLEA 180 (295)
T ss_dssp ------------H------------HHHHHH---------HH--H-----TCCEEEC--CTTCCHHHHHHHHHHHHHHHT
T ss_pred ------------H------------HHHHhc---------cc--C-----CeEEEEc--CCCCCHHHHHHHHHHHHHhCC
Confidence 0 000000 00 0 3322211 112345567899999998899
Q ss_pred CCeEEEecc-CCCCCHHHHHHHHHHHHHHhCCcEEEEEcc
Q psy13349 520 APILLLDEA-TSALDSEAEIAIQKSLYNLMKGKTVIAIAH 558 (604)
Q Consensus 520 p~ililDE~-ts~LD~~~~~~i~~~i~~~~~~~t~i~itH 558 (604)
++++|+||| ++++|......+.+..+....+.+++++..
T Consensus 181 ~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~ 220 (295)
T 1ls1_A 181 RDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDA 220 (295)
T ss_dssp CCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEG
T ss_pred CCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeC
Confidence 999999999 999999888888777766666777666543
No 147
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.16 E-value=4.9e-13 Score=137.89 Aligned_cols=92 Identities=16% Similarity=0.231 Sum_probs=75.8
Q ss_pred CceEEEEEEEEEeCCCCceeeecceEE-------------------eCCcEEEEEcCCCCcHHHHHHHHhcCCC--CCcc
Q psy13349 357 NGKIFFKNVSFSYDQKHLIINNLSLTI-------------------QPGEKIGLVGRSGAGKSTINNLLLRFYD--IKYG 415 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~~isl~i-------------------~~G~~~~ivG~sGsGKSTl~~ll~~~~~--~~~G 415 (604)
.+.|+++||++.|. ++++++++++ ++|+++||+||||||||||+++|+|++. |++|
T Consensus 35 ~~~i~~~~v~~~y~---~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G 111 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL---PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHR 111 (308)
T ss_dssp CTTCCHHHHHHTHH---HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCC
T ss_pred ccccchHhHHHHHH---HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCC
Confidence 35689999999994 6899999998 8999999999999999999999999998 9999
Q ss_pred EEEE---CCEeCCCCCHHHHhccceEEcccCcCCc-ccHHHHHhc
Q psy13349 416 EILI---DGQNISNVSQESLREQIGMVTQDTSLLH-RSIRDNILY 456 (604)
Q Consensus 416 ~I~i---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-~ti~eNi~~ 456 (604)
+|.+ ||.+. + ...++.++++ |+..++. -|+.+|+.+
T Consensus 112 ~i~vi~~d~~~~---~-~~~~~~~~~v-q~~~~~~~~~~~~~~~~ 151 (308)
T 1sq5_A 112 RVELITTDGFLH---P-NQVLKERGLM-KKKGFPESYDMHRLVKF 151 (308)
T ss_dssp CEEEEEGGGGBC---C-HHHHHHHTCT-TCTTSGGGBCHHHHHHH
T ss_pred eEEEEecCCccC---c-HHHHHhCCEe-ecCCCCCCccHHHHHHH
Confidence 9999 88764 2 2345678888 7665543 377777643
No 148
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=99.16 E-value=7.9e-12 Score=133.54 Aligned_cols=153 Identities=18% Similarity=0.150 Sum_probs=92.2
Q ss_pred eeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHh
Q psy13349 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNIL 455 (604)
Q Consensus 376 l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~ 455 (604)
-++++|++++|+.++|||+||||||||+++|++..+ .+.+.+...+ ...+++|+++.. ..-++.|+..
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999843 3455444333 335777777641 1112333322
Q ss_pred cCCC-----CCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCC
Q psy13349 456 YGRP-----DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530 (604)
Q Consensus 456 ~g~~-----~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts 530 (604)
+... ..... .....+.+. .+-. ..++. .+...+||+||+||.++||+|..+|.++++ +
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~------~lL~---vvDls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----N 277 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR------VLLY---VLDAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----N 277 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS------EEEE---EEETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----E
T ss_pred cccchhhhhhhhHH-HHHHHHHHH------hhhE---EeCCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----E
Confidence 2110 01111 110000000 0000 00111 122246999999999999999999999999 9
Q ss_pred CCCHHHHHHHHHHHHHH-h-CCcEEEEEcc
Q psy13349 531 ALDSEAEIAIQKSLYNL-M-KGKTVIAIAH 558 (604)
Q Consensus 531 ~LD~~~~~~i~~~i~~~-~-~~~t~i~itH 558 (604)
.+|..+. ...+.+.+. . .+.+++.||.
T Consensus 278 KlDl~~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 278 KVDLLEE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CCTTSCH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred CCChhhH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 9998766 344444333 2 3567776663
No 149
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.12 E-value=1.1e-12 Score=128.49 Aligned_cols=129 Identities=20% Similarity=0.212 Sum_probs=97.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC---CCCccEEEE--------CCEeCCC-CCHHHHhccceEEcccC------cCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY---DIKYGEILI--------DGQNISN-VSQESLREQIGMVTQDT------SLL 446 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~---~~~~G~I~i--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~lf 446 (604)
.+.+++|+|||||||||++++|.+.+ .++.|++.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 36789999999999999999999877 778899887 6777653 34567888999999976 345
Q ss_pred cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc-ccCCCCCChhHHHHHHHHHHHccCCCeEEE
Q psy13349 447 HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV-GEHGIKLSGGQRQRIAIARVILKNAPILLL 525 (604)
Q Consensus 447 ~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v-~e~g~~LSgGq~QrialARall~~p~ilil 525 (604)
..++.+++. ++++..++..+..++++...+. +..+.+ .++|.-++|+ .++++++++++++|+
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~-----~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~ 146 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALL-----RRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIF 146 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHH-----HHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEE
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHH-----HHHHHHHhCCCEEEECC-----CccceEecCCCEEEE
Confidence 557777763 4577777777777777777655 444433 2456677877 466778899999999
Q ss_pred eccCC
Q psy13349 526 DEATS 530 (604)
Q Consensus 526 DE~ts 530 (604)
++++.
T Consensus 147 l~~~~ 151 (227)
T 1cke_A 147 LDASS 151 (227)
T ss_dssp EECCH
T ss_pred EeCCH
Confidence 88754
No 150
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=99.10 E-value=9.8e-11 Score=119.82 Aligned_cols=139 Identities=14% Similarity=0.118 Sum_probs=91.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCCCCCH
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASE 463 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~ 463 (604)
++|++++++|++||||||++..|++.+.+++| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999988777 25677777763 223333321
Q ss_pred HHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHH
Q psy13349 464 CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS 543 (604)
Q Consensus 464 ~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~ 543 (604)
..++.. |+..... .+ ++..+.+++++ ++|+++|+| |+++|+..+..+.+.
T Consensus 155 ----~~~~~~----------------gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el 204 (296)
T 2px0_A 155 ----TYAELL----------------QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDEL 204 (296)
T ss_dssp ----HHHTTT----------------TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHH
T ss_pred ----HHHHhc----------------CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHH
Confidence 111111 2222111 12 34457777765 999999999 999998776655543
Q ss_pred HHHHh---CCcEEEEE--ccChhHHhh-cCeEEEEeCCEEeEe
Q psy13349 544 LYNLM---KGKTVIAI--AHRLSTISA-MDRLIVLDNGCVAEE 580 (604)
Q Consensus 544 i~~~~---~~~t~i~i--tH~l~~~~~-~d~i~vl~~G~iv~~ 580 (604)
.+-.. .+.+++++ +|..+.+.. +|++..++.|.++..
T Consensus 205 ~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVlt 247 (296)
T 2px0_A 205 KETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIFT 247 (296)
T ss_dssp HHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEEE
T ss_pred HHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEEe
Confidence 33222 33455565 899877665 677766777777753
No 151
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=99.10 E-value=2.9e-11 Score=130.98 Aligned_cols=64 Identities=14% Similarity=0.070 Sum_probs=55.3
Q ss_pred EEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q psy13349 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS 428 (604)
Q Consensus 361 ~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~ 428 (604)
++.+++... .++|+|+||++++ ++++|+||||||||||+++|+|+++|++|+|.++|.++...+
T Consensus 8 ~l~~l~~~~---~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN---WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE---ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec---cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 355555432 2489999999999 999999999999999999999999999999999999887544
No 152
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=99.07 E-value=2e-10 Score=117.90 Aligned_cols=98 Identities=19% Similarity=0.321 Sum_probs=72.5
Q ss_pred cceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCC
Q psy13349 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGR 458 (604)
Q Consensus 379 isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~ 458 (604)
++++.++|++++++|+|||||||++..|++.+.+..|+|.+.+.|.... ...++
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~eq----- 150 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIEQ----- 150 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHHH-----
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHHH-----
Confidence 4556788999999999999999999999999999888998877664210 00111
Q ss_pred CCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHH---HHHHHHccCCCeEEEeccCC
Q psy13349 459 PDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRI---AIARVILKNAPILLLDEATS 530 (604)
Q Consensus 459 ~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qri---alARall~~p~ililDE~ts 530 (604)
+ ..+.+.. |++.. ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 151 -------L---------~~~~~~~-------gl~~~-----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 151 -------L---------KIWGERV-------GATVI-----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp -------H---------HHHHHHH-------TCEEE-----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred -------H---------HHHHHHc-------CCcEE-----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1 1111111 44321 24589999999 99999999999999999974
No 153
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=99.06 E-value=1.7e-11 Score=125.75 Aligned_cols=73 Identities=18% Similarity=0.241 Sum_probs=45.0
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE---CCEeCCCCCHHHHhccceEEcccCcCCc-----ccHHH
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI---DGQNISNVSQESLREQIGMVTQDTSLLH-----RSIRD 452 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i---~g~~~~~~~~~~~r~~i~~v~Q~~~lf~-----~ti~e 452 (604)
+++.+|++++|+||||||||||+|+|+|...|..|+|.+ +|.+..... ...+..+++++|+|.++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999999 888775432 222223899999997654 477 8
Q ss_pred HHh
Q psy13349 453 NIL 455 (604)
Q Consensus 453 Ni~ 455 (604)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 984
No 154
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=99.06 E-value=1e-12 Score=139.19 Aligned_cols=165 Identities=13% Similarity=0.140 Sum_probs=107.8
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhc------------CCCCCccEEEECCEeCCCCCH-HHHhcc---ceEEcccCcC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLR------------FYDIKYGEILIDGQNISNVSQ-ESLREQ---IGMVTQDTSL 445 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~------------~~~~~~G~I~i~g~~~~~~~~-~~~r~~---i~~v~Q~~~l 445 (604)
++++|.+++|||+||+|||||+|+|+| ..+|+.|.+.++|..+..+.. -.-++. ...+.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 668999999998843221100 000112 2356666666
Q ss_pred Ccc-cHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc----ccCCCCCChhHHHHHHHHHHHccCC
Q psy13349 446 LHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV----GEHGIKLSGGQRQRIAIARVILKNA 520 (604)
Q Consensus 446 f~~-ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v----~e~g~~LSgGq~QrialARall~~p 520 (604)
..+ |..|++. .+....++.+. .+-..+ ......+||+. ||
T Consensus 96 ~~~~s~~e~L~--------~~fl~~ir~~d---------------~il~Vvd~~~d~~i~~v~~~~------------dP 140 (392)
T 1ni3_A 96 TKGASTGVGLG--------NAFLSHVRAVD---------------AIYQVVRAFDDAEIIHVEGDV------------DP 140 (392)
T ss_dssp CCCCCSSSSSC--------HHHHHHHTTCS---------------EEEEEEECCCTTCSSCCSSSS------------CH
T ss_pred ccCCcHHHHHH--------HHHHHHHHHHH---------------HHHHHHhccccceeeeecccc------------Cc
Confidence 543 3333220 01111111111 111111 12223356652 89
Q ss_pred --CeEEEeccCCCCCHHHHHHHHHHHHHH-hC-CcEEEEEccChhHHhh-cCeEE-EEeCC-EEeEecCh
Q psy13349 521 --PILLLDEATSALDSEAEIAIQKSLYNL-MK-GKTVIAIAHRLSTISA-MDRLI-VLDNG-CVAEEGSH 583 (604)
Q Consensus 521 --~ililDE~ts~LD~~~~~~i~~~i~~~-~~-~~t~i~itH~l~~~~~-~d~i~-vl~~G-~iv~~g~~ 583 (604)
++.++|||++.+|++..++.++.+... .+ ++|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 141 ~~di~ildeel~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 141 IRDLSIIVDELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred chhhhhchhhhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 999999999999999999999888776 43 5564 3999987655 89999 89999 88866653
No 155
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.04 E-value=2.9e-11 Score=116.31 Aligned_cols=72 Identities=18% Similarity=0.209 Sum_probs=56.7
Q ss_pred ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHHHHHh
Q psy13349 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDNIL 455 (604)
Q Consensus 380 sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~ 455 (604)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++........+..++|++|++..|.. +..+|+.
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFL 73 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEE
Confidence 57889999999999999999999999999974 578888877766555557789999999988865 6666654
No 156
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.03 E-value=4.9e-13 Score=135.67 Aligned_cols=142 Identities=16% Similarity=0.153 Sum_probs=96.4
Q ss_pred EEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEc
Q psy13349 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVT 440 (604)
Q Consensus 361 ~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~ 440 (604)
+++++.+.|.+ ..+++++++++++| ++|+||||||||||++++++... .|.|.++|.++.+......++.+++++
T Consensus 51 ~l~~l~~~~~~-~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 125 (278)
T 1iy2_A 51 ELKEIVEFLKN-PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 125 (278)
T ss_dssp HHHHHHHHHHC-HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHC-HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHHHH
Confidence 34556555643 45899999999999 99999999999999999999885 799999987765444444566788888
Q ss_pred ccCc-CCcc-cHHHHH-hcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc
Q psy13349 441 QDTS-LLHR-SIRDNI-LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517 (604)
Q Consensus 441 Q~~~-lf~~-ti~eNi-~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall 517 (604)
|++. .++. ++.||+ .++...... .. .......+.+..++. .|||||+||..+++|+.
T Consensus 126 ~~~~~~~~~i~~iDeid~l~~~~~~~--~~--~~~~~~~~~~~~ll~----------------~lsgg~~~~~~i~~a~t 185 (278)
T 1iy2_A 126 ETAKRHAPCIVFIDEIDAVGRKRGSG--VG--GGNDEREQTLNQLLV----------------EMDGFEKDTAIVVMAAT 185 (278)
T ss_dssp HHHHTSCSEEEEEETHHHHHCC------------CHHHHHHHHHHHH----------------HHTTCCTTCCEEEEEEE
T ss_pred HHHHhcCCcEEehhhhHhhhcccccc--cC--CcchHHHHHHHHHHH----------------HHhCCCCCCCEEEEEec
Confidence 8864 3433 667777 333211000 00 000001122233322 47899999999999999
Q ss_pred cCCCeEEEeccC
Q psy13349 518 KNAPILLLDEAT 529 (604)
Q Consensus 518 ~~p~ililDE~t 529 (604)
.+|++ +|++.
T Consensus 186 ~~p~~--ld~~l 195 (278)
T 1iy2_A 186 NRPDI--LDPAL 195 (278)
T ss_dssp SCTTS--SCHHH
T ss_pred CCchh--CCHhH
Confidence 99987 67764
No 157
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.00 E-value=4.2e-11 Score=119.76 Aligned_cols=78 Identities=21% Similarity=0.222 Sum_probs=63.5
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHh---cCCCCCccEEE--------ECCEeCC-CCCHHHHhccceEEccc
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL---RFYDIKYGEIL--------IDGQNIS-NVSQESLREQIGMVTQD 442 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~I~--------i~g~~~~-~~~~~~~r~~i~~v~Q~ 442 (604)
++++.+ ++|++++|+|||||||||++++|+ |++.|++|.+. .+|.++. ......+++.+++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444544 789999999999999999999999 99999999999 9999884 45677899999999964
Q ss_pred ------CcCCcccHHHHHh
Q psy13349 443 ------TSLLHRSIRDNIL 455 (604)
Q Consensus 443 ------~~lf~~ti~eNi~ 455 (604)
..++..++.+|+.
T Consensus 96 ~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp ETTEEEEEETTEECTTGGG
T ss_pred CCCCceEEECCeehhHHHH
Confidence 4456668888865
No 158
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=99.00 E-value=2.2e-11 Score=115.85 Aligned_cols=132 Identities=19% Similarity=0.317 Sum_probs=60.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHH
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYD-------------IKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRD 452 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 452 (604)
|++++|+||||||||||+++|+|+++ |.+|++ +|.++...+.+.+.+.+ .++..++..++..
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~ge~--~g~~~~~~~~~~~~~~~---~~~~~~e~~~~~~ 75 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSMI---KNNEFIEWAQFSG 75 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCGGGEECCCEEECSCCCTTCC--BTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCccceEEeeccccCCCCCcc--CCeeeeecCHHHHHHHH---hhcceeeEEEEec
Confidence 67899999999999999999999998 777775 77666555555555443 2445555555555
Q ss_pred HHhcCCCCCCHHHHHHHHHH----------chHHHHHHH--hhhhh-------hcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 453 NILYGRPDASECELFNAAKC----------AEADIFIKS--LTDEH-------GRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 453 Ni~~g~~~~~~~~i~~a~~~----------~~~~~~i~~--lp~~~-------~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
|+ +|.+ .+++.+.++. .++.. +.. .++.. ...-+...+.++|..-....+||++-|
T Consensus 76 ~~-yg~~---~~~i~~~l~~g~~~il~~~~~g~~~-l~~~~~~~~~~i~i~~p~~~~l~~Rl~~Rg~~~~~~i~~rl~~~ 150 (186)
T 3a00_A 76 NY-YGST---VASVKQVSKSGKTCILDIDMQGVKS-VKAIPELNARFLFIAPPSVEDLKKRLEGRGTETEESINKRLSAA 150 (186)
T ss_dssp EE-EEEE---HHHHHHHHHTTCEEEEECCHHHHHH-HHTCGGGCCEEEEEECSCC-------------------------
T ss_pred ee-ccCc---HHHHHHHHHcCCeEEEEEcHHHHHH-HHHhcCCCeEEEEEECcCHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 54 4433 2334333332 11111 221 11000 011455556667777667778889888
Q ss_pred HHHc-----cCCCeEEEec
Q psy13349 514 RVIL-----KNAPILLLDE 527 (604)
Q Consensus 514 Rall-----~~p~ililDE 527 (604)
+.-+ +.++.+|..+
T Consensus 151 ~~~~~~~~~~~~d~vi~nd 169 (186)
T 3a00_A 151 QAELAYAETGAHDKVIVND 169 (186)
T ss_dssp --------CCCCSEEEECS
T ss_pred HHHHHhhcccCCcEEEECc
Confidence 8765 4567777654
No 159
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=98.99 E-value=8.4e-13 Score=131.98 Aligned_cols=138 Identities=16% Similarity=0.155 Sum_probs=96.4
Q ss_pred EEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEc
Q psy13349 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVT 440 (604)
Q Consensus 361 ~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~ 440 (604)
+++++++.|.+ ..+++++++++++| ++|+||||||||||++++++... .|.+.++|.++.+......++.++.++
T Consensus 27 ~l~~l~~~~~~-~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~~~ 101 (254)
T 1ixz_A 27 ELKEIVEFLKN-PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLF 101 (254)
T ss_dssp HHHHHHHHHHC-HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHC-HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHHHH
Confidence 45566666643 45899999999999 99999999999999999999875 789999987765444444556788888
Q ss_pred ccCc-CCcc-cHHHHH-hcCCCCC-----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHH
Q psy13349 441 QDTS-LLHR-SIRDNI-LYGRPDA-----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512 (604)
Q Consensus 441 Q~~~-lf~~-ti~eNi-~~g~~~~-----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Qrial 512 (604)
|+.. .++. ++.||+ .++.... ..++. .+.+..+.. .|||||+||..+
T Consensus 102 ~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~---------~~~~~~ll~----------------~l~g~~~~~~~i 156 (254)
T 1ixz_A 102 ETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDER---------EQTLNQLLV----------------EMDGFEKDTAIV 156 (254)
T ss_dssp HHHTTSSSEEEEEETHHHHHC---------CHHH---------HHHHHHHHH----------------HHHTCCTTCCEE
T ss_pred HHHHhcCCeEEEehhhhhhhcccCccccccchHH---------HHHHHHHHH----------------HHhCCCCCCCEE
Confidence 8764 3333 566776 3332110 01111 122223322 478999999999
Q ss_pred HHHHccCCCeEEEeccCC
Q psy13349 513 ARVILKNAPILLLDEATS 530 (604)
Q Consensus 513 ARall~~p~ililDE~ts 530 (604)
++|+..+|++ +|++.-
T Consensus 157 ~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 157 VMAATNRPDI--LDPALL 172 (254)
T ss_dssp EEEEESCGGG--SCGGGG
T ss_pred EEEccCCchh--CCHHHc
Confidence 9999999987 687764
No 160
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=98.97 E-value=3e-10 Score=112.19 Aligned_cols=168 Identities=17% Similarity=0.165 Sum_probs=92.1
Q ss_pred Cceeeec-ceEEeCCcEEEEEcCCCCcHHHHHH-HHhcCCCCCccEEEECCEeCCCCCHHHHh---ccceEEcccCcCCc
Q psy13349 373 HLIINNL-SLTIQPGEKIGLVGRSGAGKSTINN-LLLRFYDIKYGEILIDGQNISNVSQESLR---EQIGMVTQDTSLLH 447 (604)
Q Consensus 373 ~~~l~~i-sl~i~~G~~~~ivG~sGsGKSTl~~-ll~~~~~~~~G~I~i~g~~~~~~~~~~~r---~~i~~v~Q~~~lf~ 447 (604)
.+.|+++ .--+++|+.++|.||||||||||+. ++.+..+...+.+++++.. +..+++ +.+++.+|+...
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~-- 82 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE-- 82 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH--
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh--
Confidence 3457776 6789999999999999999999954 5555554444556555422 333332 234555543210
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc--cCCCeEEE
Q psy13349 448 RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL--KNAPILLL 525 (604)
Q Consensus 448 ~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall--~~p~ilil 525 (604)
.+|+.+.... .+.+ + ..+ ..+...-+. +....+....++.++ .+|+++++
T Consensus 83 ---~~~l~~~~~~--~~~~-------~------~~~------~~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vvi 134 (247)
T 2dr3_A 83 ---KGMFAMVDAF--TAGI-------G------KSK------EYEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVV 134 (247)
T ss_dssp ---HTSEEEEECS--TTTT-------C------C--------CCCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEE
T ss_pred ---CCcEEEEecc--hhhc-------c------ccc------ccccccccC----ccCHHHHHHHHHHHHHHhCCCEEEE
Confidence 0112111000 0000 0 000 000001111 112233344444444 47999999
Q ss_pred eccCCCC--CHHHHHHHHHHHHHHh--CCcEEEEEccChhH---------HhhcCeEEEEeC
Q psy13349 526 DEATSAL--DSEAEIAIQKSLYNLM--KGKTVIAIAHRLST---------ISAMDRLIVLDN 574 (604)
Q Consensus 526 DE~ts~L--D~~~~~~i~~~i~~~~--~~~t~i~itH~l~~---------~~~~d~i~vl~~ 574 (604)
|++++-+ |+....+....+.+.. .++|+++++|.... ...||.|+.|+.
T Consensus 135 D~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 135 DSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp ETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred CCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 9999988 5544445555554432 47899999998764 345899999964
No 161
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.96 E-value=2.9e-11 Score=135.96 Aligned_cols=157 Identities=14% Similarity=0.199 Sum_probs=104.7
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCc-cEEEECCEeCCCCCHHHHhccceEEcccC--------
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY-GEILIDGQNISNVSQESLREQIGMVTQDT-------- 443 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~-------- 443 (604)
..+++++++.+++|+.++|+||||+|||||+++|+++.++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999887 8888888765543 34688887654
Q ss_pred --------------cCC-cccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHH
Q psy13349 444 --------------SLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508 (604)
Q Consensus 444 --------------~lf-~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~Q 508 (604)
+.| ..++.+|+..++.......+... ......+.+... .++. .....+|+|++|
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~-------~~~~---~~~g~~~~g~~~ 190 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV-------RHDP---FQSGGLGTPAHE 190 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE-------CCCC---C----CCCCGGG
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE-------Eech---hhcCCccccccc
Confidence 223 22455555443211100000000 001111111111 1111 122359999999
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN 546 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~ 546 (604)
++..++....++.+|+|||... |++.....+.+.+.+
T Consensus 191 ~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 191 RVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp GEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999999999999988 899999999998874
No 162
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=98.96 E-value=1.4e-12 Score=136.08 Aligned_cols=159 Identities=14% Similarity=0.199 Sum_probs=95.9
Q ss_pred EEEEEeCCCCceeeecceEEeCC-------cEEEEEcCCCCcHHHHHHHHhcCC----CCCccEEEECCEeCCCCCHHHH
Q psy13349 364 NVSFSYDQKHLIINNLSLTIQPG-------EKIGLVGRSGAGKSTINNLLLRFY----DIKYGEILIDGQNISNVSQESL 432 (604)
Q Consensus 364 ~vsf~y~~~~~~l~~isl~i~~G-------~~~~ivG~sGsGKSTl~~ll~~~~----~~~~G~I~i~g~~~~~~~~~~~ 432 (604)
+++..|+. ..+++++++.+++| +.++|+||||+|||||++++++.. .+.+|.+..++.++..+.....
T Consensus 23 ~l~~~~g~-~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~~~~~ 101 (334)
T 1in4_A 23 SLDEFIGQ-ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAILTSLE 101 (334)
T ss_dssp SGGGCCSC-HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHHHHCC
T ss_pred cHHHccCc-HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHHHHcc
Confidence 33334543 45899999999877 899999999999999999999998 6778887776655432211112
Q ss_pred hccceEEcccCcCCcccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHH-HhhhhhhcCCCccccccCCCCCChhHHHHHH
Q psy13349 433 REQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK-SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511 (604)
Q Consensus 433 r~~i~~v~Q~~~lf~~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~-~lp~~~~~~g~~t~v~e~g~~LSgGq~Qria 511 (604)
+..|.+++|...++. ++.|++.....+... ++..... .....+. .+|. + ++.. ...+...||+|+|||++
T Consensus 102 ~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~-~i~~~~~--~~~~~i~~~l~~-~---~li~-at~~~~~Ls~~l~sR~~ 172 (334)
T 1in4_A 102 RGDVLFIDEIHRLNK-AVEELLYSAIEDFQI-DIMIGKG--PSAKSIRIDIQP-F---TLVG-ATTRSGLLSSPLRSRFG 172 (334)
T ss_dssp TTCEEEEETGGGCCH-HHHHHHHHHHHTSCC-CC-----------------CC-C---EEEE-EESCGGGSCHHHHTTCS
T ss_pred CCCEEEEcchhhcCH-HHHHHHHHHHHhccc-ceeeccC--cccccccccCCC-e---EEEE-ecCCcccCCHHHHHhcC
Confidence 457999999887765 787777421100000 0000000 0000011 1121 1 2211 12334589999999986
Q ss_pred HHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHh
Q psy13349 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548 (604)
Q Consensus 512 lARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~ 548 (604)
++ .+||+.+.+.+.+.+++..
T Consensus 173 l~----------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 173 II----------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp EE----------------EECCCCCHHHHHHHHHHHH
T ss_pred ce----------------eeCCCCCHHHHHHHHHHHH
Confidence 55 6777777777777776543
No 163
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=98.95 E-value=1.3e-10 Score=110.68 Aligned_cols=142 Identities=22% Similarity=0.205 Sum_probs=77.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC-----------CccEEEECCEeCCC--CCHHHHhccceEEcccCcCCcc--cHHH
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDI-----------KYGEILIDGQNISN--VSQESLREQIGMVTQDTSLLHR--SIRD 452 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~-----------~~G~I~i~g~~~~~--~~~~~~r~~i~~v~Q~~~lf~~--ti~e 452 (604)
+++|+|+||||||||++.++|...+ ++|+|.++|.++.- ++....++..++++|...-.++ ++.|
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976531 1111112223333332110000 1111
Q ss_pred HHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhHHHHHHHHHHHccCCCeEEEeccCCC
Q psy13349 453 NILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531 (604)
Q Consensus 453 Ni~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq~QrialARall~~p~ililDE~ts~ 531 (604)
+. +.....+ +..++..+.+... ...- -.++.. ..|..-..+...+||++.++|+++++| ||+
T Consensus 111 ~~-------~~~s~~~------~~~~~~~~~~~~~-~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sa 173 (191)
T 1oix_A 111 IA-------KHLTYEN------VERWLKELRDHAD-SNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSA 173 (191)
T ss_dssp TT-------CHHHHHT------HHHHHHHHHHHSC-TTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCT
T ss_pred Cc-------CHHHHHH------HHHHHHHHHHhcC-CCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeC
Confidence 10 1111100 1111111110000 0000 011211 122222234578899999999999999 999
Q ss_pred CCHHHHHHHHHHHHH
Q psy13349 532 LDSEAEIAIQKSLYN 546 (604)
Q Consensus 532 LD~~~~~~i~~~i~~ 546 (604)
+|..+...+++.+.+
T Consensus 174 ld~~~v~~l~~~l~~ 188 (191)
T 1oix_A 174 LDSTNVEAAFQTILT 188 (191)
T ss_dssp TTCTTHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH
Confidence 999999999988865
No 164
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=98.90 E-value=3.6e-11 Score=118.01 Aligned_cols=75 Identities=15% Similarity=0.145 Sum_probs=51.8
Q ss_pred eEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH--------H
Q psy13349 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ--------E 430 (604)
Q Consensus 359 ~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~--------~ 430 (604)
.++++|++..|+. ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...++ .
T Consensus 9 ~l~l~~~~~~~~~--------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (227)
T 1qhl_A 9 SLTLINWNGFFAR--------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLHG 79 (227)
T ss_dssp EEEEEEETTEEEE--------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CGG
T ss_pred EEEEEeeecccCC--------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchhh
Confidence 5888888655531 455566 8999999999999999999999999999999999998843322 2
Q ss_pred HHhccceEEccc
Q psy13349 431 SLREQIGMVTQD 442 (604)
Q Consensus 431 ~~r~~i~~v~Q~ 442 (604)
..+..+++|+|+
T Consensus 80 ~~~~~i~~v~~~ 91 (227)
T 1qhl_A 80 KLKAGVCYSMLD 91 (227)
T ss_dssp GBCSSEEEEEEE
T ss_pred HhhcCcEEEEEe
Confidence 346789999985
No 165
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=98.88 E-value=2.2e-09 Score=116.57 Aligned_cols=179 Identities=14% Similarity=0.097 Sum_probs=110.1
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEECCEeCCCCCHHHHhccc-eEEcccCcCCcccH
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG-EILIDGQNISNVSQESLREQI-GMVTQDTSLLHRSI 450 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~I~i~g~~~~~~~~~~~r~~i-~~v~Q~~~lf~~ti 450 (604)
-+.|+++..-+++|+.+.|.|++|+|||||+..+++...+..| .+.+.+. +++...+++++ +....- .
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~- 259 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N- 259 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-
Confidence 3578888888999999999999999999999999887766545 5655443 34555544332 111110 0
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc--cCCCeEEEecc
Q psy13349 451 RDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL--KNAPILLLDEA 528 (604)
Q Consensus 451 ~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall--~~p~ililDE~ 528 (604)
.+.+.-| ..++++.....+.. +.+.. .+-.+.+ ...+|++|.+ +.+|++. .+|+++++|++
T Consensus 260 ~~~l~~g--~l~~~~~~~~~~a~---~~l~~---------~~l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l 322 (454)
T 2r6a_A 260 AQNLRTG--KLTPEDWGKLTMAM---GSLSN---------AGIYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYL 322 (454)
T ss_dssp HHHHHTS--CCCHHHHHHHHHHH---HHHHS---------SCEEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECG
T ss_pred HHHHhcC--CCCHHHHHHHHHHH---HHHhc---------CCEEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccH
Confidence 1123223 23444433222211 11111 1112222 3478999876 6777777 57999999999
Q ss_pred CCCCCH--------HHHHHHHHHHHHHh--CCcEEEEEcc---------C--hh--------HH-hhcCeEEEEeCCEEe
Q psy13349 529 TSALDS--------EAEIAIQKSLYNLM--KGKTVIAIAH---------R--LS--------TI-SAMDRLIVLDNGCVA 578 (604)
Q Consensus 529 ts~LD~--------~~~~~i~~~i~~~~--~~~t~i~itH---------~--l~--------~~-~~~d~i~vl~~G~iv 578 (604)
+.-.++ .....+.+.|+.+. .+.++|+++| + +. .+ ..||.|++|..++..
T Consensus 323 ~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~~ 402 (454)
T 2r6a_A 323 QLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDYY 402 (454)
T ss_dssp GGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC-
T ss_pred HHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEeccccc
Confidence 997743 22245566666554 2789999999 1 32 23 358999999876543
No 166
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=98.87 E-value=6.7e-09 Score=108.65 Aligned_cols=75 Identities=17% Similarity=0.267 Sum_probs=49.2
Q ss_pred HHHHHHHHHccC--CCeEEEeccCCCC----------CH---HHHHHHHHHHHHH----h-CCcEEEEEccChh------
Q psy13349 508 QRIAIARVILKN--APILLLDEATSAL----------DS---EAEIAIQKSLYNL----M-KGKTVIAIAHRLS------ 561 (604)
Q Consensus 508 QrialARall~~--p~ililDE~ts~L----------D~---~~~~~i~~~i~~~----~-~~~t~i~itH~l~------ 561 (604)
|-+.+++++.++ |+++++||+++.+ |+ ...+.+.+.++++ . .++|+|+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 445678888765 9999999999998 32 1112333333332 1 3899999999543
Q ss_pred ----------HHh-hcCeEEEEeCCEEeEecC
Q psy13349 562 ----------TIS-AMDRLIVLDNGCVAEEGS 582 (604)
Q Consensus 562 ----------~~~-~~d~i~vl~~G~iv~~g~ 582 (604)
.++ .||.++.++.++++..|+
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 133 489999998887665554
No 167
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=98.86 E-value=1.6e-10 Score=126.05 Aligned_cols=162 Identities=15% Similarity=0.120 Sum_probs=95.3
Q ss_pred ecceEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHh
Q psy13349 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLR--FYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNIL 455 (604)
Q Consensus 378 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~ 455 (604)
.+++++.+|..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+. .-|+++. ++.+|
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~-------~lPhl~~-~Vvtd-- 228 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYE-------GIPHLLT-EVVTD-- 228 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGT-------TCTTBSS-SCBCS--
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhc-------cCCcccc-eeecC--
Confidence 4778888999999999999999999999876 6777778888888877653332221 1122221 11111
Q ss_pred cCCCCCCHHHHHHHHHHc--hHHHHHHHhhhhhhcCCCccccccC---CCCCChhHHHHH----------HHHHHHccCC
Q psy13349 456 YGRPDASECELFNAAKCA--EADIFIKSLTDEHGRKGYDAHVGEH---GIKLSGGQRQRI----------AIARVILKNA 520 (604)
Q Consensus 456 ~g~~~~~~~~i~~a~~~~--~~~~~i~~lp~~~~~~g~~t~v~e~---g~~LSgGq~Qri----------alARall~~p 520 (604)
.++..++++.+ .+++..+.+. ..|....-+-+ ...+||||+||. ++|+++-..|
T Consensus 229 -------~~~a~~~L~~~~~EmerR~~ll~----~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP 297 (512)
T 2ius_A 229 -------MKDAANALRWCVNEMERRYKLMS----ALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEP 297 (512)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHH----HTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCC
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHH----HcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCC
Confidence 11222222211 1111111111 12433222111 124788887753 4677788889
Q ss_pred C-eEEEeccCCCCCHHHHHHHHHHHHHH---h--CCcEEEEEccChh
Q psy13349 521 P-ILLLDEATSALDSEAEIAIQKSLYNL---M--KGKTVIAIAHRLS 561 (604)
Q Consensus 521 ~-ililDE~ts~LD~~~~~~i~~~i~~~---~--~~~t~i~itH~l~ 561 (604)
. ++++||+++.+|.. ...+.+.+.++ . .|.++|++|||++
T Consensus 298 ~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 298 YIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred cEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 8 78899999998843 23344444332 2 2779999999987
No 168
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.82 E-value=2.1e-10 Score=110.00 Aligned_cols=72 Identities=29% Similarity=0.422 Sum_probs=62.1
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC-------------CCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYD-------------IKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR 448 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ 448 (604)
..-+|+.++|+||||||||||++.|++.++ |..|+ +||.+..-++.+.+++.+ .|+.+++.+
T Consensus 15 ~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~~ 89 (197)
T 3ney_A 15 YFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEFG 89 (197)
T ss_dssp -CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEEE
T ss_pred CCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhhh
Confidence 345899999999999999999999999986 67787 699998888888888775 689999999
Q ss_pred cHHHHHhcCCC
Q psy13349 449 SIRDNILYGRP 459 (604)
Q Consensus 449 ti~eNi~~g~~ 459 (604)
++.+| .||.|
T Consensus 90 ~~~~n-~YGt~ 99 (197)
T 3ney_A 90 SYQGN-MFGTK 99 (197)
T ss_dssp EETTE-EEEEE
T ss_pred hhhce-ecccc
Confidence 99999 58854
No 169
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.75 E-value=1e-10 Score=123.36 Aligned_cols=141 Identities=11% Similarity=0.100 Sum_probs=88.0
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHH
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDN 453 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 453 (604)
++++++|+++++|+.++|+||||||||||+++|+|.+ +|++..-+ .+.+.++..+++++|...+| .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~-----~~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN-----LPLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS-----SCTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe-----ccchhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999954 67775511 11122334588899987543 233
Q ss_pred HhcCCC---CC-CHHHHHHHHHHchHHHHHHHh---------hhhhhcCCCc-cccccCCCCCChhHHHHHHHHHHHccC
Q psy13349 454 ILYGRP---DA-SECELFNAAKCAEADIFIKSL---------TDEHGRKGYD-AHVGEHGIKLSGGQRQRIAIARVILKN 519 (604)
Q Consensus 454 i~~g~~---~~-~~~~i~~a~~~~~~~~~i~~l---------p~~~~~~g~~-t~v~e~g~~LSgGq~QrialARall~~ 519 (604)
+....+ .. +.+.+. ....+.+.+... |+.. +.-+. -.+.++...+++|++||++.+.+++.+
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~ 300 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPK 300 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCE-EECCCCEEEEECSCCCCHHHHTTEEEEEECCCC
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhH-HHhhcCcccChhHHhhcHHHHHHHhhhhccCCC
Confidence 333221 00 000110 011122222100 0000 00000 123455667899999999999999999
Q ss_pred CCeEE-EeccCC
Q psy13349 520 APILL-LDEATS 530 (604)
Q Consensus 520 p~ili-lDE~ts 530 (604)
|++++ ||+|+.
T Consensus 301 pDLliyLd~~~~ 312 (377)
T 1svm_A 301 DYLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHHTCTH
T ss_pred CCeEEEEeCCHH
Confidence 99988 999997
No 170
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=98.74 E-value=3.2e-09 Score=102.37 Aligned_cols=77 Identities=16% Similarity=0.166 Sum_probs=53.7
Q ss_pred ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhcCCC
Q psy13349 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRP 459 (604)
Q Consensus 380 sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~g~~ 459 (604)
-=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+..+.+
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~~ 68 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDKN 68 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCTT
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhcccc
Confidence 34678899999999999999999999999874 47899999998876 66665544
Q ss_pred CCCHHHHHHHHHHchHHHHHHHh
Q psy13349 460 DASECELFNAAKCAEADIFIKSL 482 (604)
Q Consensus 460 ~~~~~~i~~a~~~~~~~~~i~~l 482 (604)
...+.++..++....+.+++..+
T Consensus 69 ~~~~~~~~~~~~~~~l~~~i~~~ 91 (207)
T 2qt1_A 69 GFLQYDVLEALNMEKMMSAISCW 91 (207)
T ss_dssp SCBCCSSGGGBCHHHHHHHHHHH
T ss_pred CCChhHHHHHhHHHHHHHHHHHH
Confidence 33222222333333444444443
No 171
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.73 E-value=4.9e-10 Score=105.94 Aligned_cols=71 Identities=24% Similarity=0.301 Sum_probs=54.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEE----------ECCEeCCCCCHHHHhccceEEcccCcCCcccHHHH
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDI-KYGEIL----------IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDN 453 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~I~----------i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eN 453 (604)
+|++++|+||||||||||+++|++.+++ ..|.|. ++|.++...+.+.+++. +.|+.+++.+++.+|
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~n 80 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHEDA 80 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETTE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcCc
Confidence 6999999999999999999999999864 445553 35655555666666653 568888888899888
Q ss_pred HhcCCC
Q psy13349 454 ILYGRP 459 (604)
Q Consensus 454 i~~g~~ 459 (604)
.+|.+
T Consensus 81 -~yg~~ 85 (180)
T 1kgd_A 81 -MYGTK 85 (180)
T ss_dssp -EEEEE
T ss_pred -ccccc
Confidence 56643
No 172
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=98.71 E-value=5.7e-09 Score=99.75 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=30.8
Q ss_pred HHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHH
Q psy13349 510 IAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN 546 (604)
Q Consensus 510 ialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~ 546 (604)
...||++.++|++.++| ||++|......+++.+.+
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~ 164 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILT 164 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHH
Confidence 45699999999999999 999999999888887754
No 173
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.68 E-value=7.6e-09 Score=117.36 Aligned_cols=76 Identities=24% Similarity=0.288 Sum_probs=64.8
Q ss_pred ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhccceEEcccCcCCcccHHHHHhc
Q psy13349 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI--KYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILY 456 (604)
Q Consensus 380 sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~eNi~~ 456 (604)
|+++++|.+++|+|++|+|||||++.|++...+ ..|+| .+|..+.+....+.++.+++.+|.+.++..+++.||..
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliD 80 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLD 80 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEe
Confidence 456789999999999999999999999987665 67998 78989988888888999999999998888787777753
No 174
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=98.64 E-value=2.9e-09 Score=106.12 Aligned_cols=52 Identities=23% Similarity=0.457 Sum_probs=36.1
Q ss_pred eEEEEEE-EEEeCCCCceeeecceEEeC---CcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 359 KIFFKNV-SFSYDQKHLIINNLSLTIQP---GEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 359 ~i~~~~v-sf~y~~~~~~l~~isl~i~~---G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.++++|+ +|+|+++.++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ---------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecCcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99994456799999999999 9999999999999999999999855
No 175
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.56 E-value=3.5e-08 Score=95.42 Aligned_cols=71 Identities=27% Similarity=0.283 Sum_probs=48.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC-CccEEE----------ECCEeCCCCCHHHHhccceEEcccCcCCcccHHH
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDI-KYGEIL----------IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRD 452 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~I~----------i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~ti~e 452 (604)
++|+.++|+||||||||||++.|++.++| ..+.+. .+|.+....+...+++.+ .|+.+++.+++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 58999999999999999999999999976 333332 234444444555555443 4556666666666
Q ss_pred HHhcCC
Q psy13349 453 NILYGR 458 (604)
Q Consensus 453 Ni~~g~ 458 (604)
| .+|.
T Consensus 83 ~-~yg~ 87 (208)
T 3tau_A 83 N-YYGT 87 (208)
T ss_dssp E-EEEE
T ss_pred c-cCCC
Confidence 6 4553
No 176
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=98.53 E-value=1.1e-07 Score=103.13 Aligned_cols=69 Identities=25% Similarity=0.359 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCC----------CCCHHHHHHHHHHHHHH-----hCCcEEEEEccChhHHh----
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATS----------ALDSEAEIAIQKSLYNL-----MKGKTVIAIAHRLSTIS---- 564 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts----------~LD~~~~~~i~~~i~~~-----~~~~t~i~itH~l~~~~---- 564 (604)
|++++|-.+++|....|.|+++||+.+ +.|++.++.+.+.+... ..+..+|..||+.+.+.
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~all 172 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILDPALL 172 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGG
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhchhhc
Confidence 678899999999999999999999943 56666555555544433 23568888999986542
Q ss_pred ---hcCeEEEE
Q psy13349 565 ---AMDRLIVL 572 (604)
Q Consensus 565 ---~~d~i~vl 572 (604)
++|+.+.+
T Consensus 173 R~gRFd~~i~i 183 (476)
T 2ce7_A 173 RPGRFDKKIVV 183 (476)
T ss_dssp STTSSCEEEEC
T ss_pred ccCcceeEeec
Confidence 35665554
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.52 E-value=1.2e-08 Score=97.86 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=44.2
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCC
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLL 446 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf 446 (604)
++.++|++++|+|||||||||++++|++.+ |.+.++|.++... ....+...++++|++..+
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~ 84 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRW 84 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccc
Confidence 566789999999999999999999999987 8999999776421 112223568888875443
No 178
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=98.49 E-value=1.1e-07 Score=100.01 Aligned_cols=143 Identities=18% Similarity=0.262 Sum_probs=83.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC-----------CCccEEEECCEeCCCCCHHHHhccceEEcccCcC----CcccHH-
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYD-----------IKYGEILIDGQNISNVSQESLREQIGMVTQDTSL----LHRSIR- 451 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~-----------~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~l----f~~ti~- 451 (604)
.++|+|++|||||||++.|+|... |..|+|.++|.++. +....|++.|.|.- |..|..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~tl~~ 254 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVTLSE 254 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHHHHH
Confidence 399999999999999999999865 67799999997652 23456666664431 222222
Q ss_pred ----HHHhcCCCCCCHHH--HHHHHHHchHHHHHHHhhhhhhcCCCc-cccccCCCCCChhHHHHHHHH----HHH-ccC
Q psy13349 452 ----DNILYGRPDASECE--LFNAAKCAEADIFIKSLTDEHGRKGYD-AHVGEHGIKLSGGQRQRIAIA----RVI-LKN 519 (604)
Q Consensus 452 ----eNi~~g~~~~~~~~--i~~a~~~~~~~~~i~~lp~~~~~~g~~-t~v~e~g~~LSgGq~QrialA----Ral-l~~ 519 (604)
|++.+.. ++++.. ..+..+ ...+.+..+. ..+.- -.|+..--.+|+|++||+.++ +++ ..+
T Consensus 255 ~~~aD~il~Vv-D~s~~~~~~~~~~~--~~~~~L~~l~----~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~ 327 (364)
T 2qtf_A 255 AKYSDALILVI-DSTFSENLLIETLQ--SSFEILREIG----VSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPI 327 (364)
T ss_dssp GGGSSEEEEEE-ETTSCHHHHHHHHH--HHHHHHHHHT----CCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCE
T ss_pred HHhCCEEEEEE-ECCCCcchHHHHHH--HHHHHHHHhC----cCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCC
Confidence 1121111 122111 111111 1122222221 00111 122333445788899988877 666 445
Q ss_pred CCeEEEeccCCCCCHHHHHHHHHHHHHH
Q psy13349 520 APILLLDEATSALDSEAEIAIQKSLYNL 547 (604)
Q Consensus 520 p~ililDE~ts~LD~~~~~~i~~~i~~~ 547 (604)
|++ +|+|++|.+....+.+.|.+.
T Consensus 328 ~~~----~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 328 FDV----IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp EEE----EECBTTTTBSHHHHHHHHHHH
T ss_pred CcE----EEEECCCCcCHHHHHHHHHHH
Confidence 554 899999999999998888664
No 179
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.49 E-value=4e-09 Score=101.32 Aligned_cols=61 Identities=28% Similarity=0.386 Sum_probs=45.9
Q ss_pred EEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE--EECCEeCC
Q psy13349 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI--LIDGQNIS 425 (604)
Q Consensus 363 ~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I--~i~g~~~~ 425 (604)
+|++..+.. ..+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 3 ~~~~~~~~~-~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 3 TNIKWHECS-VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp -------CC-CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCCcccccc-cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 355554432 346778888899999999999999999999999999987 77988 88886543
No 180
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.48 E-value=4.3e-08 Score=93.97 Aligned_cols=62 Identities=19% Similarity=0.243 Sum_probs=41.0
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcC
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSL 445 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~l 445 (604)
+++++|++++|+|||||||||++++|++.+.|+.| +.+ +....... ...+..+++++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 46889999999999999999999999999977655 222 22222211 1122347888887643
No 181
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=98.44 E-value=5.1e-09 Score=114.28 Aligned_cols=138 Identities=16% Similarity=0.153 Sum_probs=93.0
Q ss_pred EEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcc
Q psy13349 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQ 441 (604)
Q Consensus 362 ~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q 441 (604)
++++...|.+ ..+++++++++++| +.|+||+|+|||||++++++... .|.+.++|.++.+.......+++..++|
T Consensus 43 l~~lv~~l~~-~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~lfq 117 (499)
T 2dhr_A 43 LKEIVEFLKN-PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDLFE 117 (499)
T ss_dssp HHHHHHHHHC-GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHHTT
T ss_pred HHHHHHHhhc-hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHHHH
Confidence 3444333432 35789999999999 99999999999999999999875 7899999988766544455566888888
Q ss_pred cCc-CCcc-cHHHHH-hcCCCCC-----CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHH
Q psy13349 442 DTS-LLHR-SIRDNI-LYGRPDA-----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513 (604)
Q Consensus 442 ~~~-lf~~-ti~eNi-~~g~~~~-----~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialA 513 (604)
+.. ..+. .+.|++ .++...- ..++... .+..+.. .|||||+|+..++
T Consensus 118 ~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~---------~l~~LL~----------------~Ldg~~~~~~viv 172 (499)
T 2dhr_A 118 TAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQ---------TLNQLLV----------------EMDGFEKDTAIVV 172 (499)
T ss_dssp TSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHH---------HHHHHHH----------------HGGGCCSSCCCEE
T ss_pred HHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHH---------HHHHHHH----------------HhcccccCccEEE
Confidence 864 3333 556777 3432110 1122111 1122211 2667788888888
Q ss_pred HHHccCCCeEEEeccCCC
Q psy13349 514 RVILKNAPILLLDEATSA 531 (604)
Q Consensus 514 Rall~~p~ililDE~ts~ 531 (604)
+|..++|++ ||||.-.
T Consensus 173 iAatn~p~~--LD~aLlr 188 (499)
T 2dhr_A 173 MAATNRPDI--LDPALLR 188 (499)
T ss_dssp EECCSCGGG--SCTTTSS
T ss_pred EEecCChhh--cCccccc
Confidence 888888877 7887653
No 182
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.43 E-value=1.4e-08 Score=112.19 Aligned_cols=72 Identities=25% Similarity=0.279 Sum_probs=54.4
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEE-ECCEeCCC-------CCH---HHHhccceEEcccCcCCcc
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG-EIL-IDGQNISN-------VSQ---ESLREQIGMVTQDTSLLHR 448 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~I~-i~g~~~~~-------~~~---~~~r~~i~~v~Q~~~lf~~ 448 (604)
..+++|++++|+|+||||||||+++|++.+.|++| ++. +||.++.+ ++. ..+++.+++++|+.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~l----- 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASEI----- 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHHH-----
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHHH-----
Confidence 36789999999999999999999999999999987 784 89976532 222 22445688888873
Q ss_pred cHHHHHhcC
Q psy13349 449 SIRDNILYG 457 (604)
Q Consensus 449 ti~eNi~~g 457 (604)
+..+|+.+.
T Consensus 439 ~~~~~ivi~ 447 (552)
T 3cr8_A 439 TKNRGIAIC 447 (552)
T ss_dssp HHTTCEEEE
T ss_pred HhcCCEEEE
Confidence 345565543
No 183
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=98.42 E-value=5.3e-08 Score=100.52 Aligned_cols=68 Identities=18% Similarity=0.232 Sum_probs=55.3
Q ss_pred eeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCH----HHH-----hccceEE-cccC
Q psy13349 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ----ESL-----REQIGMV-TQDT 443 (604)
Q Consensus 376 l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~----~~~-----r~~i~~v-~Q~~ 443 (604)
++++||++++|++++++|++||||||++..|++.+.+..|+|.+.+.|...... ..| +..+.++ +|..
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~ 172 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKL 172 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSST
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCC
Confidence 467889999999999999999999999999999999999999998877754321 234 5668888 5554
No 184
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=98.36 E-value=9.3e-07 Score=92.75 Aligned_cols=47 Identities=19% Similarity=0.224 Sum_probs=36.6
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhc--CCCCCccEEEECCEe
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR--FYDIKYGEILIDGQN 423 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~I~i~g~~ 423 (604)
.+|++++++++ .+++||++|||||||++.|.| +.++.+|.++-.+..
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~ 73 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLV 73 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceE
Confidence 47899999998 999999999999999999999 778888877655443
No 185
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=98.36 E-value=6.2e-07 Score=93.57 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=48.9
Q ss_pred ceeeecce--EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-EECCEeCCCCCHHHHhccceEEcccCc
Q psy13349 374 LIINNLSL--TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI-LIDGQNISNVSQESLREQIGMVTQDTS 444 (604)
Q Consensus 374 ~~l~~isl--~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I-~i~g~~~~~~~~~~~r~~i~~v~Q~~~ 444 (604)
+.|+.+-= -+++|+.+.|.||+|||||||+..+++...+..|.+ ++++.+.. + ..+.+++++.+|+..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLL 117 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhh
Confidence 44555432 589999999999999999999999999887777765 66664322 2 234556777766543
No 186
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=98.31 E-value=3.1e-08 Score=102.01 Aligned_cols=126 Identities=15% Similarity=0.143 Sum_probs=72.8
Q ss_pred CceeeecceEEeCCc------EEEEEcCCCCcHHHHHHHHhcCCCC--CccEEEECCEeCCCCCHHHHhccceEEcccCc
Q psy13349 373 HLIINNLSLTIQPGE------KIGLVGRSGAGKSTINNLLLRFYDI--KYGEILIDGQNISNVSQESLREQIGMVTQDTS 444 (604)
Q Consensus 373 ~~~l~~isl~i~~G~------~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~ 444 (604)
.+.|++++..+.+++ ++||+||||||||||+++|.+++.+ ++|+ ++++++|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f 133 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeeccc
Confidence 457888888887776 9999999999999999999999873 4444 445555554
Q ss_pred CCcccHHHHH----hcCCCCC-CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHccC
Q psy13349 445 LLHRSIRDNI----LYGRPDA-SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN 519 (604)
Q Consensus 445 lf~~ti~eNi----~~g~~~~-~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall~~ 519 (604)
..+....+.. .+|.|+. +.+.+ .+++..+.. |-++..- -.+|-+..+|+.-+...+..
T Consensus 134 ~~~~~~l~~~~~~~~~g~P~~~D~~~l---------~~~L~~L~~-----g~~~v~~---P~yd~~~~~r~~~~~~~v~~ 196 (321)
T 3tqc_A 134 LYSNAKLEKQGLMKRKGFPESYDMPSL---------LRVLNAIKS-----GQRNVRI---PVYSHHYYDIVRGQYEIVDQ 196 (321)
T ss_dssp BCCHHHHHHTTCGGGTTSGGGBCHHHH---------HHHHHHHHT-----TCSSEEE---EEEETTTTEEEEEEEEEECS
T ss_pred ccchhhhhhHHHHhhccCcccccHHHH---------HHHHHhhhc-----ccccccc---chhhhhccccccCceeeccC
Confidence 4433222221 1333432 22222 233344433 3211100 01222222333323345678
Q ss_pred CCeEEEeccCCCCCH
Q psy13349 520 APILLLDEATSALDS 534 (604)
Q Consensus 520 p~ililDE~ts~LD~ 534 (604)
|+++|++.+..-.|+
T Consensus 197 ~dIVIvEGi~lL~~~ 211 (321)
T 3tqc_A 197 PDIVILEGLNILQTG 211 (321)
T ss_dssp CSEEEEECTTTTCCC
T ss_pred CCEEEEEcccccccc
Confidence 999999998876655
No 187
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=98.29 E-value=1.2e-07 Score=89.26 Aligned_cols=67 Identities=13% Similarity=0.255 Sum_probs=47.9
Q ss_pred eecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCE--eCCCCC----HHHHhccceEEcccCc
Q psy13349 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ--NISNVS----QESLREQIGMVTQDTS 444 (604)
Q Consensus 377 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~--~~~~~~----~~~~r~~i~~v~Q~~~ 444 (604)
+++++++.+| +++|+||||||||||+++|.++..+..|...-.+. ++-... ....+..|.+++|++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~ 90 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNED 90 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCC
Confidence 6789999999 99999999999999999999988887775433221 111000 0023457899999863
No 188
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.28 E-value=1.6e-06 Score=90.83 Aligned_cols=61 Identities=16% Similarity=0.175 Sum_probs=49.6
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEe-ccCCCCCHHHHHHHHHHHHHHhCCcEEEEEc--cChh
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLD-EATSALDSEAEIAIQKSLYNLMKGKTVIAIA--HRLS 561 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililD-E~ts~LD~~~~~~i~~~i~~~~~~~t~i~it--H~l~ 561 (604)
..+|+||+|++. +.+...++-++++| ++++++|.+....+.+.+.+..+++++|+|. |++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 468999999887 66666677788999 9999999999888888887765578888888 7764
No 189
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.28 E-value=3.1e-07 Score=87.84 Aligned_cols=39 Identities=31% Similarity=0.317 Sum_probs=25.0
Q ss_pred CCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 372 ~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
..++++|+||++++|++++|+|++||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 356899999999999999999999999999999999866
No 190
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=98.24 E-value=4.1e-07 Score=87.32 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=44.1
Q ss_pred CChhHHHHHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHH---hhcCeEEEEeC
Q psy13349 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTI---SAMDRLIVLDN 574 (604)
Q Consensus 502 LSgGq~QrialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~---~~~d~i~vl~~ 574 (604)
.+.|+.+|..+++....+|+.+-.+ ++.++|...+.+.+.+... .+.++|+-+|.+... ..||.+++++-
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 3678999999999999888654333 3355666666666555433 355888888887543 56899999954
No 191
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.23 E-value=5.4e-08 Score=95.60 Aligned_cols=65 Identities=15% Similarity=0.083 Sum_probs=49.5
Q ss_pred cceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCC------CHHH----HhccceEEcccCcCCc
Q psy13349 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNV------SQES----LREQIGMVTQDTSLLH 447 (604)
Q Consensus 379 isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~------~~~~----~r~~i~~v~Q~~~lf~ 447 (604)
-+.+.++|++++|.|+|||||||++++|.+. .|+|.+++.|.... .... .++.+++++|++.++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 3445689999999999999999999999998 78899988765321 1111 2456888898876654
No 192
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=98.23 E-value=1.5e-07 Score=97.97 Aligned_cols=54 Identities=22% Similarity=0.298 Sum_probs=50.5
Q ss_pred CceEEEEEEEEEeCCCCceee--------------ecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 357 NGKIFFKNVSFSYDQKHLIIN--------------NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 357 ~~~i~~~~vsf~y~~~~~~l~--------------~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.+.++|+||+|.||+++..|+ |+++.+.+|++++|+||+|+|||||++.|++..
T Consensus 131 ~~ri~Fe~ltp~yP~er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 131 RNKILFENLTPLHANSRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TTSCCTTTSCEESCCSBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cCCceeccccccCCCCccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 467999999999998878899 999999999999999999999999999999975
No 193
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=98.18 E-value=1.8e-06 Score=99.50 Aligned_cols=66 Identities=18% Similarity=0.183 Sum_probs=53.1
Q ss_pred CCCChhHHHHHHHHHHHccCCCeEEEeccCC-CCCHHHHHHHHHHHHHHhC-CcEEEE-EccChhHHhh
Q psy13349 500 IKLSGGQRQRIAIARVILKNAPILLLDEATS-ALDSEAEIAIQKSLYNLMK-GKTVIA-IAHRLSTISA 565 (604)
Q Consensus 500 ~~LSgGq~QrialARall~~p~ililDE~ts-~LD~~~~~~i~~~i~~~~~-~~t~i~-itH~l~~~~~ 565 (604)
.-+|+|+.+|..++++++.+++++|+|||.. ++|......+++.+.+..+ .+++++ .||+.+.+..
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~ 257 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQR 257 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHH
Confidence 3568999999999999999999999999997 9998877777777765554 456666 4898776544
No 194
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=98.15 E-value=6.4e-07 Score=89.73 Aligned_cols=59 Identities=15% Similarity=0.247 Sum_probs=49.1
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEEEEe
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLD 573 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~vl~ 573 (604)
|++|||||..+|+++++|||| |+++...+.+ ....++|+++++|+.+....|||+++|.
T Consensus 88 ~~~la~aL~~~p~illlDEp~---D~~~~~~~l~---~~~~g~~vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 88 ADALRAALREDPDVIFVGEMR---DLETVETALR---AAETGHLVFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp HHHHHHHHHHCCSEEEESCCC---SHHHHHHHHH---HHHTTCEEEEEECCSSHHHHHHHHHHTS
T ss_pred HHHHHHHHhhCCCEEEeCCCC---CHHHHHHHHH---HHccCCEEEEEeCcchHHHHHHHHhhhc
Confidence 899999999999999999999 9988655444 3346899999999998777788876653
No 195
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=98.15 E-value=3.7e-06 Score=87.13 Aligned_cols=37 Identities=14% Similarity=0.198 Sum_probs=30.9
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4566666679999999999999999999997776544
No 196
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=98.14 E-value=6.4e-06 Score=87.92 Aligned_cols=161 Identities=16% Similarity=0.125 Sum_probs=93.8
Q ss_pred EEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHH-HhccceEEc
Q psy13349 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIGMVT 440 (604)
Q Consensus 362 ~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~-~r~~i~~v~ 440 (604)
.++++..|++.. ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++.. +
T Consensus 79 ~~~L~~~~~~~~---~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~-~--- 149 (425)
T 2ffh_A 79 YEALKEALGGEA---RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL-G--- 149 (425)
T ss_dssp HHHHHHHTTSSC---CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH-H---
T ss_pred HHHHHHHhCCCc---ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh-c---
Confidence 344555564322 578887 89999999999999999999999999999999999877765422211 1110 0
Q ss_pred ccCcCCcccHHHHHhcC--CCCCCHHHHHHHHHHchHHHHHHHh-hhhhhcCCCccccccCCCCCC---hhHHHHHHHHH
Q psy13349 441 QDTSLLHRSIRDNILYG--RPDASECELFNAAKCAEADIFIKSL-TDEHGRKGYDAHVGEHGIKLS---GGQRQRIAIAR 514 (604)
Q Consensus 441 Q~~~lf~~ti~eNi~~g--~~~~~~~~i~~a~~~~~~~~~i~~l-p~~~~~~g~~t~v~e~g~~LS---gGq~QrialAR 514 (604)
-+.|+-+. .+..+..++. .+.+..+ .+ ++|..+=+.+..++ ....+..++++
T Consensus 150 ---------~~~gv~v~~~~~~~~p~~i~--------~~~l~~~~~~-----~~DvVIIDTaG~l~~d~~l~~el~~i~~ 207 (425)
T 2ffh_A 150 ---------EKVGVPVLEVMDGESPESIR--------RRVEEKARLE-----ARDLILVDTAGRLQIDEPLMGELARLKE 207 (425)
T ss_dssp ---------HHHTCCEEECCTTCCHHHHH--------HHHHHHHHHT-----TCSEEEEECCCCSSCCHHHHHHHHHHHH
T ss_pred ---------ccCCccEEecCCCCCHHHHH--------HHHHHHHHHC-----CCCEEEEcCCCcccccHHHHHHHHHhhh
Confidence 01121110 1112233331 1223333 13 78877665544443 24567777888
Q ss_pred HHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEcc
Q psy13349 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAH 558 (604)
Q Consensus 515 all~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH 558 (604)
++..++-++++| ++++.|.... .+.+.+. -+.+-+++||
T Consensus 208 ~~~pd~vlLVvD-a~tgq~av~~---a~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 208 VLGPDEVLLVLD-AMTGQEALSV---ARAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp HHCCSEEEEEEE-GGGTTHHHHH---HHHHHHH-TCCCEEEEES
T ss_pred ccCCceEEEEEe-ccchHHHHHH---HHHHHhc-CCceEEEEeC
Confidence 886666677788 4556554432 2233322 2457777776
No 197
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=98.13 E-value=5.2e-06 Score=88.76 Aligned_cols=40 Identities=28% Similarity=0.301 Sum_probs=35.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~ 424 (604)
++.+++++|++||||||++..|++.+.+..++|.+-+.|.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999988888888766554
No 198
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.12 E-value=4.1e-07 Score=84.89 Aligned_cols=38 Identities=24% Similarity=0.351 Sum_probs=33.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~ 425 (604)
.+|++++|+|+|||||||+++.|++.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 469999999999999999999999875 88899887654
No 199
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=98.02 E-value=2.9e-06 Score=87.65 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=28.8
Q ss_pred ceeeecc-eEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 374 LIINNLS-LTIQPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 374 ~~l~~is-l~i~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+.|+.+- =-+++|+.+.|.||+|||||||+..++.-
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 3454432 36899999999999999999999887764
No 200
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=98.01 E-value=1.2e-06 Score=84.01 Aligned_cols=47 Identities=19% Similarity=0.108 Sum_probs=39.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS 428 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~ 428 (604)
..++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....+
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~ 64 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVE 64 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCC
Confidence 45789999999999999999999999999888899888766654433
No 201
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=97.96 E-value=1.7e-05 Score=83.20 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=34.0
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHHh----CCcEEEEEccChhHH
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLM----KGKTVIAIAHRLSTI 563 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~~----~~~t~i~itH~l~~~ 563 (604)
.+|.++++||+... |+.....+.+.+.+.. .+.++|++||+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45779999999886 8887777777775433 367888999988543
No 202
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.82 E-value=1.8e-05 Score=82.44 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=25.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
-+++|+.+.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999999999888774
No 203
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=97.81 E-value=8.7e-05 Score=75.06 Aligned_cols=70 Identities=17% Similarity=0.235 Sum_probs=45.3
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccCCCCCHHH----------HHHHHHHHHHHh-----CCcEEEEEccChh-----HH
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEA----------EIAIQKSLYNLM-----KGKTVIAIAHRLS-----TI 563 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~ts~LD~~~----------~~~i~~~i~~~~-----~~~t~i~itH~l~-----~~ 563 (604)
+++++|-.+++|...+|.++++||+.+-.+... ...++..+.... .+..+|.+|++.+ ..
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 567778888888888999999999988766432 223444444322 1245677788754 24
Q ss_pred hhcCeEEEEe
Q psy13349 564 SAMDRLIVLD 573 (604)
Q Consensus 564 ~~~d~i~vl~ 573 (604)
+++|+++.+.
T Consensus 178 ~R~~~~i~~~ 187 (297)
T 3b9p_A 178 RRFTKRVYVS 187 (297)
T ss_dssp HHCCEEEECC
T ss_pred hhCCeEEEeC
Confidence 5677776653
No 204
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=97.77 E-value=6.7e-06 Score=78.24 Aligned_cols=57 Identities=25% Similarity=0.334 Sum_probs=39.2
Q ss_pred EEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC----C----CCCccEEEECCEe
Q psy13349 366 SFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF----Y----DIKYGEILIDGQN 423 (604)
Q Consensus 366 sf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~----~----~~~~G~I~i~g~~ 423 (604)
+++|++-.++++++|++.+++ +++++|++|+|||||++.+.+- + .++.+.+.++|.+
T Consensus 6 ~~~~~~~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 70 (198)
T 1f6b_A 6 DWIYSGFSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMT 70 (198)
T ss_dssp -------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEE
T ss_pred HHHHHHHHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEE
Confidence 467777667999999998887 5889999999999999999872 2 3345666666643
No 205
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.76 E-value=2.7e-06 Score=79.65 Aligned_cols=40 Identities=38% Similarity=0.499 Sum_probs=32.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEECCEeC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG--EILIDGQNI 424 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~I~i~g~~~ 424 (604)
++|++++|+|++||||||++++|.+.+.+ .| .|.+||..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998765 56 666676443
No 206
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=97.73 E-value=5.3e-06 Score=91.80 Aligned_cols=68 Identities=19% Similarity=0.343 Sum_probs=44.0
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEccc
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQD 442 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~ 442 (604)
.+++++++++ +|+.++|+||||+|||||++++++...+..|+|.++|......-....++.+++.+|.
T Consensus 97 ~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~ 164 (543)
T 3m6a_A 97 LAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGR 164 (543)
T ss_dssp HHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------C
T ss_pred HHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchH
Confidence 4678888888 8999999999999999999999999999999998887543221122334556666654
No 207
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=97.71 E-value=0.0002 Score=70.09 Aligned_cols=28 Identities=43% Similarity=0.579 Sum_probs=24.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDIKYG 415 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 415 (604)
+++|+|++|+|||||++.|+|-..+.+|
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~ 58 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSG 58 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccC
Confidence 5899999999999999999997766555
No 208
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=97.70 E-value=4.5e-05 Score=82.14 Aligned_cols=42 Identities=19% Similarity=0.366 Sum_probs=33.8
Q ss_pred CCCeEEEeccCCCCCH-HHHHHHHHHHHHHh-CCcEEEEEccCh
Q psy13349 519 NAPILLLDEATSALDS-EAEIAIQKSLYNLM-KGKTVIAIAHRL 560 (604)
Q Consensus 519 ~p~ililDE~ts~LD~-~~~~~i~~~i~~~~-~~~t~i~itH~l 560 (604)
+|++|++||+..-.+. .++..+...+.... .++.+|++||+.
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 8999999999887765 57777888887654 478899999984
No 209
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=97.69 E-value=2.1e-05 Score=84.62 Aligned_cols=70 Identities=27% Similarity=0.343 Sum_probs=43.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC------------CCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHHHH
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYD------------IKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDN 453 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~------------~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eN 453 (604)
-+++|+|+||+|||||++.|+|... |.+|.+.++|.++.-++....++..++.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 4799999999999999999999853 6789999999877555555555556666666655543 44455
Q ss_pred Hhc
Q psy13349 454 ILY 456 (604)
Q Consensus 454 i~~ 456 (604)
+..
T Consensus 261 i~~ 263 (439)
T 1mky_A 261 IEK 263 (439)
T ss_dssp HHH
T ss_pred Hhh
Confidence 543
No 210
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.63 E-value=6.9e-06 Score=85.45 Aligned_cols=52 Identities=17% Similarity=0.167 Sum_probs=46.3
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCC
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~ 425 (604)
.+++++++++++|.+++++|++|+|||||++.|++.+.+..|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4788999999999999999999999999999999999888888887666553
No 211
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=97.62 E-value=2.4e-05 Score=81.66 Aligned_cols=30 Identities=23% Similarity=0.381 Sum_probs=26.3
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~ 413 (604)
+++..+.|.||+|+|||||++.+++...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 568899999999999999999999877554
No 212
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=97.61 E-value=3e-05 Score=79.66 Aligned_cols=36 Identities=8% Similarity=0.143 Sum_probs=30.8
Q ss_pred CceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
.+.|+++.--+++|+.+.|.|++|+|||||+.-++.
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 356777776699999999999999999999877764
No 213
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=97.59 E-value=6.2e-05 Score=76.78 Aligned_cols=145 Identities=19% Similarity=0.176 Sum_probs=74.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE-CCEeCCCCCHHHHhccceEEcccCcC--CcccHHHHHhcCCCCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI-DGQNISNVSQESLREQIGMVTQDTSL--LHRSIRDNILYGRPDA 461 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i-~g~~~~~~~~~~~r~~i~~v~Q~~~l--f~~ti~eNi~~g~~~~ 461 (604)
++.+++|+|++|+|||||++.|+|.- +.+ .+.+-. ..++..++++++..- |-+| |..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~t-----Tr~~~~gi~~~~~~~i~~iDT---------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQT-----TRHRIVGIHTEGAYQAIYVDT---------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSSC-----CSSCEEEEEEETTEEEEEESS---------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCCc-----ceeeEEEEEEECCeeEEEEEC---------cCC
Confidence 34589999999999999999999853 212 111111 123456777776431 1122 222
Q ss_pred CHHHHHHHHHHchHHHHHHHhhhhhhcCCCcccc--ccCCCCCChhHHHHHHHHHHHc--cCCCeEEEeccCCCCCHHH-
Q psy13349 462 SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV--GEHGIKLSGGQRQRIAIARVIL--KNAPILLLDEATSALDSEA- 536 (604)
Q Consensus 462 ~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v--~e~g~~LSgGq~QrialARall--~~p~ililDE~ts~LD~~~- 536 (604)
.. +-..... .++....... ....|..+ -+.. .+|+|++ .+++++. ..|.++++ +-+|...
T Consensus 67 ~~-~~~~~l~----~~~~~~~~~~--l~~~D~vl~Vvd~~-~~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~ 131 (301)
T 1ega_A 67 HM-EEKRAIN----RLMNKAASSS--IGDVELVIFVVEGT-RWTPDDE---MVLNKLREGKAPVILAV----NKVDNVQE 131 (301)
T ss_dssp CH-HHHHHHH----HHHTCCTTSC--CCCEEEEEEEEETT-CCCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCC
T ss_pred Cc-cchhhHH----HHHHHHHHHH--HhcCCEEEEEEeCC-CCCHHHH---HHHHHHHhcCCCEEEEE----ECcccCcc
Confidence 10 0011110 0111111110 00222221 1222 3898886 5566666 67888888 6788765
Q ss_pred HHHHHHHHHHHhC--C--cEEEEEccChhHHh
Q psy13349 537 EIAIQKSLYNLMK--G--KTVIAIAHRLSTIS 564 (604)
Q Consensus 537 ~~~i~~~i~~~~~--~--~t~i~itH~l~~~~ 564 (604)
...+.+.+.++.+ + .++.+.+|.-..+.
T Consensus 132 ~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 132 KADLLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 5556666655543 2 35666677765443
No 214
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.59 E-value=2.6e-05 Score=72.19 Aligned_cols=33 Identities=39% Similarity=0.474 Sum_probs=28.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
.|+.++|+|+|||||||++++|++.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 45554
No 215
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=97.56 E-value=3.5e-05 Score=75.48 Aligned_cols=143 Identities=12% Similarity=0.172 Sum_probs=75.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEcccCcCCcc-cHHHHHhcCCCCC
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGRPDA 461 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~~~lf~~-ti~eNi~~g~~~~ 461 (604)
+.+|+.++++||+||||||++.+.+.-.....|. ...+.++.+.|..... ++.+|+.......
T Consensus 73 i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 73 ISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp HHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred HhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 4569999999999999999887664321111110 1346777777765433 6666664221100
Q ss_pred CHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCC---CCChhHHHHHHHHHHHccCCCeEEEeccCC-CCCHHHH
Q psy13349 462 SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGI---KLSGGQRQRIAIARVILKNAPILLLDEATS-ALDSEAE 537 (604)
Q Consensus 462 ~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~---~LSgGq~QrialARall~~p~ililDE~ts-~LD~~~~ 537 (604)
- ....+. .. ..+....+.+. --+.|.-.+.. +..+++-+++|+||+-. ++|....
T Consensus 137 ~-------~~~~g~-------~~-----~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~ 195 (235)
T 3llm_A 137 P-------GKSCGY-------SV-----RFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFL 195 (235)
T ss_dssp T-------TSSEEE-------EE-----TTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHH
T ss_pred c-------CceEEE-------ee-----chhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHH
Confidence 0 000000 00 01111110111 12456555553 44689999999999976 5777666
Q ss_pred HHHHHHHHHHhCC-cEEEEE-ccChhH
Q psy13349 538 IAIQKSLYNLMKG-KTVIAI-AHRLST 562 (604)
Q Consensus 538 ~~i~~~i~~~~~~-~t~i~i-tH~l~~ 562 (604)
....+.+.+..++ +++++. |...+.
T Consensus 196 ~~~l~~i~~~~~~~~~il~SAT~~~~~ 222 (235)
T 3llm_A 196 LVVLRDVVQAYPEVRIVLMSATIDTSM 222 (235)
T ss_dssp HHHHHHHHHHCTTSEEEEEECSSCCHH
T ss_pred HHHHHHHHhhCCCCeEEEEecCCCHHH
Confidence 4455555544443 344444 344333
No 216
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.54 E-value=2.1e-05 Score=76.98 Aligned_cols=43 Identities=21% Similarity=0.254 Sum_probs=31.5
Q ss_pred eeecceEEe---CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q psy13349 376 INNLSLTIQ---PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419 (604)
Q Consensus 376 l~~isl~i~---~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i 419 (604)
|.++|++++ +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 455555554 8999999999999999999999999887 666644
No 217
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.53 E-value=1e-05 Score=77.90 Aligned_cols=43 Identities=35% Similarity=0.299 Sum_probs=37.8
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEECCEe
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG--EILIDGQN 423 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~I~i~g~~ 423 (604)
+.+++|.+++|+|++||||||+++.|.+.+.|..| .+.++|.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 45678999999999999999999999999988888 88887643
No 218
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.50 E-value=1.7e-05 Score=75.98 Aligned_cols=30 Identities=23% Similarity=0.323 Sum_probs=26.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
...+|..++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999998774
No 219
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.48 E-value=2.4e-05 Score=81.67 Aligned_cols=43 Identities=23% Similarity=0.291 Sum_probs=36.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN 426 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~ 426 (604)
+++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4578999999999999999999999998888998887766543
No 220
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=97.46 E-value=0.00011 Score=69.77 Aligned_cols=26 Identities=19% Similarity=0.188 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
..+.|.||+|+|||||++.++.....
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~ 80 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAK 80 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 78999999999999999999886543
No 221
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=97.43 E-value=0.00018 Score=73.82 Aligned_cols=28 Identities=18% Similarity=0.055 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
++..+.|.||+|+|||||++.+++...+
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 4568999999999999999999986643
No 222
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=97.42 E-value=8.6e-05 Score=69.89 Aligned_cols=49 Identities=24% Similarity=0.318 Sum_probs=27.7
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhc----CCCC----CccEEEECCEe
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDI----KYGEILIDGQN 423 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~----~~~~----~~G~I~i~g~~ 423 (604)
.+++++|++.++. +++++|++|+|||||++.+.+ .+.| +.+++.++|..
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~ 68 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIK 68 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEE
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEE
Confidence 3788999988777 789999999999999999987 2222 34556666643
No 223
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.0007 Score=70.60 Aligned_cols=39 Identities=15% Similarity=0.197 Sum_probs=29.8
Q ss_pred CCceeeecc--eEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 372 KHLIINNLS--LTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 372 ~~~~l~~is--l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+.+.|+.+- =-+++|+.+.|.|++|||||||+.-++.-.
T Consensus 47 G~~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 47 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp SCHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 334566652 138999999999999999999997766543
No 224
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=97.36 E-value=0.00011 Score=67.89 Aligned_cols=27 Identities=37% Similarity=0.444 Sum_probs=23.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++|.+++++|++|+|||||++.+++..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
No 225
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.36 E-value=1.4e-05 Score=78.33 Aligned_cols=71 Identities=15% Similarity=0.221 Sum_probs=45.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHh---cCCCCCccEEE--------ECCEeCCCCC-HHHHhccceEEc------ccCcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLL---RFYDIKYGEIL--------IDGQNISNVS-QESLREQIGMVT------QDTSLL 446 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~I~--------i~g~~~~~~~-~~~~r~~i~~v~------Q~~~lf 446 (604)
+.-.++|.||+||||||+.+.|+ |+...+.|.++ -.|.+..+.. ..++.+.+.+.+ |+.+++
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~ 87 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLA 87 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEEC
Confidence 34589999999999999999998 55555666662 3455554432 334555566655 334444
Q ss_pred cccHHHHHh
Q psy13349 447 HRSIRDNIL 455 (604)
Q Consensus 447 ~~ti~eNi~ 455 (604)
...+.++|.
T Consensus 88 g~~v~~~ir 96 (233)
T 3r20_A 88 GEDVSSEIR 96 (233)
T ss_dssp TEECTTGGG
T ss_pred Ceehhhhhc
Confidence 445655543
No 226
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.34 E-value=0.29 Score=54.32 Aligned_cols=101 Identities=8% Similarity=-0.002 Sum_probs=49.5
Q ss_pred CCCchHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCchhhhhhHHHHHHHHHHHHHHHHHHH
Q psy13349 19 PPPYKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVG 98 (604)
Q Consensus 19 ~~~~~~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 98 (604)
...+...+.++.+.+-.+ .....++++++.+++..+.....-.++..+...-.. ......+..++++++++.++..
T Consensus 16 ~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~---~~~~~~~~~~~~~~~~~~~~~~ 91 (598)
T 3qf4_B 16 PALKNPTATLRRLLGYLR-PHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFV---PRRFDLLPRYMLILGTIYALTS 91 (598)
T ss_dssp CCCSCHHHHHHHHGGGTG-GGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT---TTCGGGHHHHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc---cCCHHHHHHHHHHHHHHHHHHH
Confidence 344566666655544444 445556666666666666666667776665532211 1123333323222222244444
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Q psy13349 99 LQTLFKHQVLSGNFPMLLRWNFHRLI 124 (604)
Q Consensus 99 ~~~~~~~~~~~~~~~~~lr~~l~~~l 124 (604)
+..++. .+...++..++..++-.++
T Consensus 92 ~~~~~~-~~~~~~~~~~~~~~lr~~l 116 (598)
T 3qf4_B 92 LLFWLQ-GKIMLTLSQDVVFRLRKEL 116 (598)
T ss_dssp HHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 444332 2334445555555555555
No 227
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=97.26 E-value=0.00058 Score=69.42 Aligned_cols=31 Identities=16% Similarity=0.367 Sum_probs=27.5
Q ss_pred ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 380 sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++.++++..+.|.||+|+|||||++.+++..
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 3456889999999999999999999999865
No 228
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.26 E-value=0.36 Score=53.48 Aligned_cols=40 Identities=10% Similarity=-0.053 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKI 63 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~ 63 (604)
.++.++++.+.....+++.++.+++..+...+...++..+
T Consensus 14 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~ 53 (587)
T 3qf4_A 14 LARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEG 53 (587)
T ss_dssp GGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555444
No 229
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=97.26 E-value=0.00038 Score=70.57 Aligned_cols=31 Identities=16% Similarity=0.116 Sum_probs=26.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccE
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 416 (604)
...+.++||+|+||||+++.+++...+..|.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~ 77 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEA 77 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGG
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcc
Confidence 3578999999999999999999988766654
No 230
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.24 E-value=1.5e-05 Score=82.71 Aligned_cols=69 Identities=20% Similarity=0.187 Sum_probs=51.5
Q ss_pred CceeeecceEEeCCcE--EEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC-CCHHHHhccceEEcc
Q psy13349 373 HLIINNLSLTIQPGEK--IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN-VSQESLREQIGMVTQ 441 (604)
Q Consensus 373 ~~~l~~isl~i~~G~~--~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~-~~~~~~r~~i~~v~Q 441 (604)
..+++.++..+++|+. +.+.||+|+||||+++++++...+..++..+.+.+..+ ...+.+|+.+..++|
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~~~~~ir~~i~~~~~ 102 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDRGIDVVRNQIKDFAS 102 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCCSHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccccHHHHHHHHHHHHh
Confidence 4588899999999998 99999999999999999999887776655544444332 234566665554444
No 231
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=97.23 E-value=0.00014 Score=66.01 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=23.2
Q ss_pred cceEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 379 isl~i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
.++++.+| ..+|+|||||||||++.+|.-
T Consensus 17 ~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 17 TVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp EEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 34445554 889999999999999999873
No 232
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.23 E-value=0.00014 Score=68.29 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=26.8
Q ss_pred ecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 378 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999876
No 233
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=97.21 E-value=7.4e-05 Score=77.26 Aligned_cols=42 Identities=17% Similarity=0.318 Sum_probs=33.3
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~ 561 (604)
++.++++|| ...+++.....+.+.+.+..++..+|+++++..
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 567999999 678899888888888877655556777777665
No 234
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.14 E-value=6.4e-05 Score=76.53 Aligned_cols=49 Identities=27% Similarity=0.253 Sum_probs=42.8
Q ss_pred ee-cceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC
Q psy13349 377 NN-LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN 426 (604)
Q Consensus 377 ~~-isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~ 426 (604)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|++.+.+.|...
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45 778776 99999999999999999999999999888999987777654
No 235
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.14 E-value=0.00067 Score=67.93 Aligned_cols=28 Identities=29% Similarity=0.409 Sum_probs=24.7
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++++..+.|.||+|+|||||++.+++..
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4667789999999999999999998864
No 236
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=97.12 E-value=0.00016 Score=69.93 Aligned_cols=27 Identities=15% Similarity=0.083 Sum_probs=24.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
++..+.|.||+|+||||+++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999999999987654
No 237
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.06 E-value=3.1e-05 Score=73.49 Aligned_cols=22 Identities=45% Similarity=0.628 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++|+|++||||||+++.|...
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999983
No 238
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.06 E-value=0.00026 Score=74.63 Aligned_cols=41 Identities=29% Similarity=0.378 Sum_probs=34.5
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcC-----------CCCCccEEEECCE
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRF-----------YDIKYGEILIDGQ 422 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~-----------~~~~~G~I~i~g~ 422 (604)
.++.|.+++|||++|+|||||++.|.|. .+|+.|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4578899999999999999999999998 6788898887663
No 239
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.05 E-value=0.00015 Score=67.91 Aligned_cols=40 Identities=30% Similarity=0.452 Sum_probs=33.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEE-EECC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI-LIDG 421 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I-~i~g 421 (604)
..++|..+.++|++||||||+++.|++.+.+..|.+ .+++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~ 49 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeH
Confidence 446799999999999999999999999887766665 4443
No 240
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=97.04 E-value=0.0018 Score=58.06 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
+.+.-+.|.||+|+|||++++.+......
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~ 50 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRN 50 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTT
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCc
Confidence 45667899999999999999999886544
No 241
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=97.02 E-value=0.00055 Score=62.55 Aligned_cols=25 Identities=40% Similarity=0.393 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
-+++++|++|+|||||++.+.|...
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCSS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCe
Confidence 3689999999999999999998643
No 242
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=97.01 E-value=0.0014 Score=62.84 Aligned_cols=44 Identities=16% Similarity=0.115 Sum_probs=33.4
Q ss_pred cCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhH
Q psy13349 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLST 562 (604)
Q Consensus 518 ~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~ 562 (604)
.+|.++++||+-. +|+.....+.+.+.+...+..+|++|++...
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~ 168 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQK 168 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHh
Confidence 3578999999876 7888888888777654456778888887654
No 243
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.99 E-value=1.6e-05 Score=83.51 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=62.4
Q ss_pred CCChhHHHHHHHHHHHc-cCCCeEEEec---cC------CCCCHHHHHHHHHHHHHHhC--CcEEEEEccChhHHhhcCe
Q psy13349 501 KLSGGQRQRIAIARVIL-KNAPILLLDE---AT------SALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDR 568 (604)
Q Consensus 501 ~LSgGq~QrialARall-~~p~ililDE---~t------s~LD~~~~~~i~~~i~~~~~--~~t~i~itH~l~~~~~~d~ 568 (604)
.+|+|++||..+++++. .+|++++||| |+ +++|+.....+.+.+.+..+ +.++++++|.-..-+.+|+
T Consensus 258 ~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~ 337 (365)
T 1lw7_A 258 CIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQV 337 (365)
T ss_dssp HHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHH
Confidence 45777888988888875 5999999999 65 68999999999999977643 7899999987444455677
Q ss_pred EEEEeCCEEeEecChhHHhhc
Q psy13349 569 LIVLDNGCVAEEGSHLDLLKK 589 (604)
Q Consensus 569 i~vl~~G~iv~~g~~~~l~~~ 589 (604)
+.++++ +++.|+.+||.++
T Consensus 338 i~~i~~--~l~~~~~~~~~~~ 356 (365)
T 1lw7_A 338 KAVIEK--VLNEEEISELQNT 356 (365)
T ss_dssp HHHHHH--HTSCCCCSSCCC-
T ss_pred HHHHHH--HhcccchhHhhcC
Confidence 766654 5566777777543
No 244
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=96.98 E-value=0.00016 Score=68.69 Aligned_cols=34 Identities=29% Similarity=0.485 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEe
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~ 423 (604)
..+++|+|++||||||+++.|.+.+ |...+++.+
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~ 51 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDA 51 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCc
Confidence 5689999999999999999998865 445565533
No 245
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=96.97 E-value=0.00017 Score=71.50 Aligned_cols=41 Identities=32% Similarity=0.463 Sum_probs=33.7
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~ 424 (604)
..++|..+.++|++||||||+.+.|.+.+. .|.+.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 456788999999999999999999998775 35677787554
No 246
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=96.95 E-value=0.00042 Score=64.41 Aligned_cols=23 Identities=43% Similarity=0.489 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
-+++++|++|+|||||++.+++-
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36899999999999999999984
No 247
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=96.94 E-value=9.4e-05 Score=85.58 Aligned_cols=61 Identities=20% Similarity=0.263 Sum_probs=44.2
Q ss_pred ceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCCCCHHHHhccceEEccc
Q psy13349 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQD 442 (604)
Q Consensus 380 sl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~~~~~~~r~~i~~v~Q~ 442 (604)
+|.+++|+.+.|+||||||||||++++++.+.+. -+.++|.++......+..+.+..++|+
T Consensus 232 ~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~--~i~v~~~~l~~~~~g~~~~~l~~vf~~ 292 (806)
T 1ypw_A 232 AIGVKPPRGILLYGPPGTGKTLIARAVANETGAF--FFLINGPEIMSKLAGESESNLRKAFEE 292 (806)
T ss_dssp SSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCE--EEEEEHHHHSSSSTTHHHHHHHHHHHH
T ss_pred hcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCc--EEEEEchHhhhhhhhhHHHHHHHHHHH
Confidence 3478999999999999999999999999988654 377777666543333333444444443
No 248
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=96.93 E-value=0.00058 Score=73.70 Aligned_cols=57 Identities=16% Similarity=0.203 Sum_probs=38.2
Q ss_pred hhHHHHHHHHHHHccCCCeEEEeccC-CCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHH
Q psy13349 504 GGQRQRIAIARVILKNAPILLLDEAT-SALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTI 563 (604)
Q Consensus 504 gGq~QrialARall~~p~ililDE~t-s~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~ 563 (604)
+.|.+....++..+++++++|+.... .++.+.. ..+.+.+++ .++.++++.+..+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d-~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAAD-EEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHH-HHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHH-HHHHHHHHH--cCCCEEEEEECccch
Confidence 35788888899999999987765444 4455444 456666644 478888888887754
No 249
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.92 E-value=7.6e-05 Score=78.16 Aligned_cols=57 Identities=26% Similarity=0.241 Sum_probs=36.1
Q ss_pred ceEEEEEEEEEeCCCCceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 358 ~~i~~~~vsf~y~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
+.+.++|++..|.. +.++++++|+| +++|++|+|||||++.|.+...+..|.+..++
T Consensus 16 ~~v~~~~l~~~~~~-k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 16 GYVGFANLPNQVHR-KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp -----CCHHHHHHT-HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred ceEEeccchHHhCC-eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 55888888877754 45788999877 99999999999999999887666555544333
No 250
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=96.91 E-value=0.097 Score=57.98 Aligned_cols=37 Identities=16% Similarity=0.089 Sum_probs=25.7
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy13349 33 YGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSN 69 (604)
Q Consensus 33 ~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id~~~~ 69 (604)
.++.+.....++++++.+++..+.+.+...++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id 42 (578)
T 4a82_A 6 LQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAID 42 (578)
T ss_dssp HHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666777777777777788888888776653
No 251
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.88 E-value=0.0019 Score=69.44 Aligned_cols=153 Identities=16% Similarity=0.165 Sum_probs=85.1
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc--EEEECCEeCCCCCHHHHhccce----EEcccCcCCc
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG--EILIDGQNISNVSQESLREQIG----MVTQDTSLLH 447 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~I~i~g~~~~~~~~~~~r~~i~----~v~Q~~~lf~ 447 (604)
+.|+.+.--+++|+.+.|.|++|+|||||+.-++.-.....| .+++.. +.+.+++..++. -++.+.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~---- 259 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR---- 259 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT----
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH----
Confidence 456776656899999999999999999999877765443223 233332 345555443321 111111
Q ss_pred ccHHHHHhcCCCCCCHHHHHHHHHHchHHHHHHHhhhhhhcCCCccccccCCCCCChhHHHHHHHHHHHc--cCCCeEEE
Q psy13349 448 RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL--KNAPILLL 525 (604)
Q Consensus 448 ~ti~eNi~~g~~~~~~~~i~~a~~~~~~~~~i~~lp~~~~~~g~~t~v~e~g~~LSgGq~QrialARall--~~p~ilil 525 (604)
+++ | ..++++.....+.+ +.+...| -.+.+ ...+|..+ ..+.+|.+. .+|+++++
T Consensus 260 --l~~----g--~l~~~~~~~~~~a~---~~l~~~~---------l~i~d-~~~~s~~~--l~~~~~~l~~~~~~~lIvI 316 (444)
T 2q6t_A 260 --VRL----G--QLTDRDFSRLVDVA---SRLSEAP---------IYIDD-TPDLTLME--VRARARRLVSQNQVGLIII 316 (444)
T ss_dssp --CCG----G--GCCHHHHHHHHHHH---HHHHTSC---------EEEEC-CTTCBHHH--HHHHHHHHHHHSCCCEEEE
T ss_pred --HhC----C--CCCHHHHHHHHHHH---HHHhcCC---------EEEEC-CCCCCHHH--HHHHHHHHHHHcCCCEEEE
Confidence 111 1 23444433322211 1122211 11222 23566664 356677776 37999999
Q ss_pred eccCCCCCH------HH----HHHHHHHHHHHhCCcEEEEEc
Q psy13349 526 DEATSALDS------EA----EIAIQKSLYNLMKGKTVIAIA 557 (604)
Q Consensus 526 DE~ts~LD~------~~----~~~i~~~i~~~~~~~t~i~it 557 (604)
|..+.-.+. .+ -..+.+.|+.+.+..-+-++.
T Consensus 317 D~l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~ 358 (444)
T 2q6t_A 317 DYLQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIA 358 (444)
T ss_dssp ECGGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred cChhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEE
Confidence 998865543 11 135556667777777788884
No 252
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.87 E-value=0.00014 Score=72.04 Aligned_cols=45 Identities=22% Similarity=0.375 Sum_probs=30.6
Q ss_pred eeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeC
Q psy13349 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424 (604)
Q Consensus 376 l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~ 424 (604)
++++++..++| +.|+||+|+||||+++++++..... -+.+++.++
T Consensus 37 ~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 37 FQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp C-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 44455555555 8999999999999999999976532 366676554
No 253
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.83 E-value=0.00037 Score=65.80 Aligned_cols=45 Identities=33% Similarity=0.531 Sum_probs=32.3
Q ss_pred EEEEcCCCCcHHHHHHHHhcCC-------------CCCccEEEECCEeCCCCCHHHHhcc
Q psy13349 389 IGLVGRSGAGKSTINNLLLRFY-------------DIKYGEILIDGQNISNVSQESLREQ 435 (604)
Q Consensus 389 ~~ivG~sGsGKSTl~~ll~~~~-------------~~~~G~I~i~g~~~~~~~~~~~r~~ 435 (604)
+.|+||||||||||++.|+.-+ +|-.|++ ||+|..-++.++..+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE~--~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGEV--NGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTCC--BTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCCc--CCceeEeecHHHHHHH
Confidence 7799999999999999887543 3345654 7777666666655443
No 254
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.79 E-value=0.00044 Score=64.57 Aligned_cols=38 Identities=21% Similarity=0.209 Sum_probs=29.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCC---ccEEEECCEe
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDIK---YGEILIDGQN 423 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~I~i~g~~ 423 (604)
-..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 4689999999999999999999876543 3777776644
No 255
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=96.78 E-value=0.00064 Score=63.33 Aligned_cols=26 Identities=31% Similarity=0.538 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDIK 413 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 413 (604)
+++++|++|+|||||++.+++...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999975443
No 256
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.75 E-value=0.00059 Score=64.77 Aligned_cols=21 Identities=43% Similarity=0.801 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy13349 388 KIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+++|+|++||||||+++.|++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
No 257
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.70 E-value=0.00027 Score=73.16 Aligned_cols=37 Identities=32% Similarity=0.428 Sum_probs=33.6
Q ss_pred ceeeecceEEeCCcE--EEEEcCCCCcHHHHHHHHhcCC
Q psy13349 374 LIINNLSLTIQPGEK--IGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 374 ~~l~~isl~i~~G~~--~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999998854
No 258
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=96.69 E-value=0.00078 Score=64.40 Aligned_cols=28 Identities=21% Similarity=0.418 Sum_probs=22.4
Q ss_pred cceEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy13349 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLL 407 (604)
Q Consensus 379 isl~i~~G~~~~ivG~sGsGKSTl~~ll~ 407 (604)
.++++.+ ...+|+|||||||||++.+|.
T Consensus 17 ~~i~f~~-~~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 17 TVVEFKE-GINLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEECCS-EEEEEECCTTSSHHHHHHHHH
T ss_pred eEEEeCC-CeEEEEcCCCCCHHHHHHHHH
Confidence 3444444 488999999999999999875
No 259
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.67 E-value=0.01 Score=63.38 Aligned_cols=35 Identities=23% Similarity=0.336 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEE
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i 419 (604)
++.+++++|++||||||++..|+..+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 46899999999999999999999877654334443
No 260
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=96.66 E-value=0.00076 Score=62.87 Aligned_cols=27 Identities=30% Similarity=0.422 Sum_probs=23.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.+|.+++++|++||||||+.+.|+..+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998543
No 261
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.66 E-value=0.002 Score=66.93 Aligned_cols=38 Identities=21% Similarity=0.275 Sum_probs=29.4
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
.+|..+.|.||+|+||||+++.++.........+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45778999999999999999999987754334444444
No 262
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.65 E-value=0.00063 Score=71.41 Aligned_cols=56 Identities=18% Similarity=0.302 Sum_probs=43.1
Q ss_pred HHHHHHHHccCCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChhHHhhcCeEE
Q psy13349 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLI 570 (604)
Q Consensus 509 rialARall~~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~~~~~~d~i~ 570 (604)
+.+|+++|..+|+++++|||| |+++.. ..++....+++++.++|..+....+||++
T Consensus 199 ~~~l~~~L~~~pd~illdE~~---d~e~~~---~~l~~~~~g~~vi~t~H~~~~~~~~~rl~ 254 (372)
T 2ewv_A 199 ADALRAALREDPDVIFVGEMR---DLETVE---TALRAAETGHLVFGTLHTNTAIDTIHRIV 254 (372)
T ss_dssp HHHHHHHTTSCCSEEEESCCC---SHHHHH---HHHHHHTTTCEEEECCCCCSHHHHHHHHH
T ss_pred HHHHHHHhhhCcCEEEECCCC---CHHHHH---HHHHHHhcCCEEEEEECcchHHHHHHHHH
Confidence 469999999999999999999 776543 34444445889999999877655566654
No 263
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=96.65 E-value=0.001 Score=61.54 Aligned_cols=27 Identities=37% Similarity=0.285 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
.|..+.|+|+|||||||+.+.|..-+.
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 367899999999999999999998664
No 264
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.55 E-value=0.013 Score=59.08 Aligned_cols=26 Identities=23% Similarity=0.486 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++..+.|.||+|+||||+++.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35668899999999999999888765
No 265
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=96.52 E-value=0.0021 Score=59.84 Aligned_cols=36 Identities=39% Similarity=0.601 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHh-cC----CCCCcc----EEEECCEe
Q psy13349 388 KIGLVGRSGAGKSTINNLLL-RF----YDIKYG----EILIDGQN 423 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~-~~----~~~~~G----~I~i~g~~ 423 (604)
+++++|++|+|||||++.+. +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 68899999999999997554 43 566766 56667643
No 266
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.51 E-value=0.0011 Score=68.94 Aligned_cols=28 Identities=29% Similarity=0.481 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
..+..+.|.||+|+||||+++.+.....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5677899999999999999999987653
No 267
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.50 E-value=0.0011 Score=62.45 Aligned_cols=33 Identities=36% Similarity=0.534 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEe
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~ 423 (604)
..+++|+|++||||||+.+.|... |-..+|..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~d~ 40 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDLDA 40 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcccH
Confidence 457999999999999999999985 666666533
No 268
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.49 E-value=0.0099 Score=58.29 Aligned_cols=27 Identities=19% Similarity=0.229 Sum_probs=22.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++..-+.|.||+|+||||+++.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568899999999999999998754
No 269
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=96.47 E-value=0.0013 Score=60.19 Aligned_cols=24 Identities=29% Similarity=0.112 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
..++|+|++||||||+.+.|...+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 368999999999999999998654
No 270
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.43 E-value=0.0022 Score=62.18 Aligned_cols=50 Identities=18% Similarity=0.201 Sum_probs=34.6
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccC-----------hhHHhhcCeEEEE
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHR-----------LSTISAMDRLIVL 572 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~-----------l~~~~~~d~i~vl 572 (604)
+++++++||+-- ++.+.-+. ...+.+ .+.++|++-|+ ...+..||.|..|
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~-l~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el 149 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEV-ANILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKL 149 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHH-HHHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEEC
T ss_pred CCCEEEEecCcc-CcHHHHHH-HHHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeec
Confidence 589999999974 76553222 233333 37899999993 2346679999886
No 271
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=96.42 E-value=1.6 Score=48.24 Aligned_cols=33 Identities=21% Similarity=0.275 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy13349 314 SHWVMWEIAALFESIGTIQDGMNMLSKKYKIVD 346 (604)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (604)
...+..++..+......++++....++..+..+
T Consensus 291 ~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~ 323 (582)
T 3b5x_A 291 MFGLMRPLKALTSVTSEFQRGMAACQTLFGLMD 323 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 344556666666667777776666666554443
No 272
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.42 E-value=0.0083 Score=62.64 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.9
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
-+++|+.+.|.||+|+|||||+.-++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 479999999999999999999966654
No 273
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=96.41 E-value=0.0017 Score=60.56 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+|.++.|.|++||||||+.+.|...+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999998754
No 274
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=96.41 E-value=0.0024 Score=66.50 Aligned_cols=36 Identities=33% Similarity=0.451 Sum_probs=31.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc-----------CCCCCccEEEECC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLR-----------FYDIKYGEILIDG 421 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~-----------~~~~~~G~I~i~g 421 (604)
|-+++|||.+|+|||||++.|.+ -.+|+.|.+.+++
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 3467888888766
No 275
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.41 E-value=0.0016 Score=63.58 Aligned_cols=26 Identities=23% Similarity=0.410 Sum_probs=23.4
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
=++|.+++|+|++||||||+.+.|++
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~ 38 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAK 38 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 35789999999999999999999986
No 276
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=96.39 E-value=1.6 Score=48.07 Aligned_cols=144 Identities=16% Similarity=0.078 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 198 LIYFIPRLNKTAESQATARSLMTGRITD-AYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHLLAM 276 (604)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~~~e-~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (604)
...+.....+..++..+...+..+.... ..+.+.-++.-..-..+ +.+.+.+++..+...+..............+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (582)
T 3b60_A 178 VSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQ-EVETKRFDKVSNKMRLQGMKMVSASSISDPIIQ 256 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555545544444444444443 33344445544333332 223333333334333333333333333333333
Q ss_pred HHHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Q psy13349 277 LLILGTTGCALFLWTKG-ILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVD 346 (604)
Q Consensus 277 ~~~~~i~~~g~~lv~~g-~lt~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 346 (604)
+...+...+. ++..+ .+.-|.+..-...+ +......+..++..+......++++....++..+..+
T Consensus 257 ~~~~~~~~~~--~~~g~~~v~~g~lt~g~l~~--~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~ 323 (582)
T 3b60_A 257 LIASLALAFV--LYAASFPSVMDSLTAGTITV--VFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILD 323 (582)
T ss_dssp HHHHHHHHHH--HHHHHSSSTTSSSHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHHHHHHHHcCCCCHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 3322222222 22222 22234433222111 2223334556666666666667766666655544443
No 277
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=96.38 E-value=0.0017 Score=60.36 Aligned_cols=26 Identities=31% Similarity=0.459 Sum_probs=22.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l 29 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLT 29 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 47789999999999999999997654
No 278
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=96.32 E-value=0.002 Score=67.91 Aligned_cols=57 Identities=19% Similarity=0.302 Sum_probs=42.9
Q ss_pred CCCeEEEeccCCCCC---HHHHHHHHHHHHHHhC-CcEEEEEccChhHH-------------hhcCeEEEEeCC
Q psy13349 519 NAPILLLDEATSALD---SEAEIAIQKSLYNLMK-GKTVIAIAHRLSTI-------------SAMDRLIVLDNG 575 (604)
Q Consensus 519 ~p~ililDE~ts~LD---~~~~~~i~~~i~~~~~-~~t~i~itH~l~~~-------------~~~d~i~vl~~G 575 (604)
.|.++++||+=.-++ +.....+.+.+++.++ +..++++||+++.+ ++|+-.+++...
T Consensus 262 ~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~~ 335 (392)
T 4ag6_A 262 ERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQG 335 (392)
T ss_dssp TTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSCC
T ss_pred ccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCCC
Confidence 478999999998885 5666777777776554 78999999999754 346666776543
No 279
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=96.32 E-value=0.0016 Score=60.81 Aligned_cols=27 Identities=26% Similarity=0.292 Sum_probs=23.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++|..+.++|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l 29 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGL 29 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHc
Confidence 467899999999999999999998644
No 280
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.30 E-value=0.0089 Score=62.16 Aligned_cols=27 Identities=30% Similarity=0.405 Sum_probs=23.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++...+.|.||+|+||||+++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 457789999999999999999998754
No 281
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=96.29 E-value=0.0021 Score=64.87 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=28.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
.+|..+.|+|||||||||+.+.|+.-++ .|.+.+++
T Consensus 31 ~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 31 ESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp SSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 3467899999999999999999987553 35667765
No 282
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.29 E-value=0.0022 Score=60.49 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.+|..++|.|++||||||+.+.|...+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999877
No 283
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.29 E-value=0.00053 Score=65.45 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=23.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDIK 413 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 413 (604)
+++|+|++||||||+++.|.+.+.+.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~ 27 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAA 27 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhc
Confidence 68999999999999999999987643
No 284
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=96.27 E-value=0.0019 Score=59.89 Aligned_cols=24 Identities=33% Similarity=0.343 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
.-+++++|++|+|||||++.+.+-
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999876
No 285
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=96.26 E-value=0.002 Score=58.71 Aligned_cols=19 Identities=42% Similarity=0.616 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHH
Q psy13349 388 KIGLVGRSGAGKSTINNLL 406 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll 406 (604)
+++|+|++||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
No 286
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=96.24 E-value=0.0015 Score=60.62 Aligned_cols=27 Identities=30% Similarity=0.274 Sum_probs=23.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.++..+.|+|++||||||+.+.|...+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~ 35 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKS 35 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHh
Confidence 467889999999999999999998544
No 287
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.22 E-value=0.0022 Score=61.55 Aligned_cols=24 Identities=33% Similarity=0.437 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
++-+++|+|++||||||+++.|..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~ 26 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD 26 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH
Confidence 456899999999999999999988
No 288
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.20 E-value=0.0033 Score=67.52 Aligned_cols=35 Identities=9% Similarity=0.148 Sum_probs=27.7
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+-|+.+.--+++|+.+.|.|++|+|||||+--++.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 34555544589999999999999999999865554
No 289
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=96.18 E-value=0.0019 Score=65.72 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=29.7
Q ss_pred ceeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 374 ~~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
..+++..+.+ .|.-++|.|+||+||||++..|.+
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 3677777777 799999999999999999998887
No 290
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.17 E-value=0.0081 Score=56.65 Aligned_cols=42 Identities=29% Similarity=0.368 Sum_probs=30.6
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~ 561 (604)
++.++++||.- .+++.....+.+.+.+...+..+|++|++..
T Consensus 102 ~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 68899999974 4677777777777766555566777777654
No 291
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=96.16 E-value=0.0067 Score=61.91 Aligned_cols=28 Identities=14% Similarity=0.160 Sum_probs=25.3
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
--+++|..+.|.||+|+|||||+..++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 4688999999999999999999988875
No 292
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=96.12 E-value=0.0026 Score=59.53 Aligned_cols=27 Identities=30% Similarity=0.429 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++|..++|+|++||||||+.+.|+..+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l 33 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKY 33 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998654
No 293
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.09 E-value=0.0029 Score=60.08 Aligned_cols=27 Identities=33% Similarity=0.504 Sum_probs=24.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++|.+++|.|++||||||+.+.|...+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 568899999999999999999998643
No 294
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.07 E-value=0.028 Score=59.67 Aligned_cols=30 Identities=37% Similarity=0.231 Sum_probs=25.2
Q ss_pred eEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 381 l~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+.-++++.+.++|++||||||+.+.|+.-+
T Consensus 253 ~~~~~~~lIil~G~pGSGKSTla~~L~~~~ 282 (416)
T 3zvl_A 253 LLSPNPEVVVAVGFPGAGKSTFIQEHLVSA 282 (416)
T ss_dssp SCCSSCCEEEEESCTTSSHHHHHHHHTGGG
T ss_pred cCCCCCEEEEEECCCCCCHHHHHHHHHHhc
Confidence 444568999999999999999999987643
No 295
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.04 E-value=0.0032 Score=59.60 Aligned_cols=28 Identities=32% Similarity=0.534 Sum_probs=24.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
+|.+++|.|++||||||+.+.|..-+..
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5788999999999999999999886653
No 296
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.02 E-value=0.0032 Score=59.84 Aligned_cols=28 Identities=36% Similarity=0.349 Sum_probs=24.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.++|.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3578999999999999999999998654
No 297
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=96.01 E-value=0.0027 Score=58.59 Aligned_cols=23 Identities=35% Similarity=0.485 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 68999999999999999998754
No 298
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=95.99 E-value=0.003 Score=62.46 Aligned_cols=24 Identities=13% Similarity=0.043 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+.++|+||+|||||||.+.|++-+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCcCHHHHHHHHHhcC
Confidence 368999999999999999998754
No 299
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=95.98 E-value=0.0015 Score=61.37 Aligned_cols=29 Identities=28% Similarity=0.434 Sum_probs=25.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.++++.+++|+|++||||||+.+.|...+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999998755
No 300
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=95.95 E-value=0.026 Score=69.41 Aligned_cols=33 Identities=15% Similarity=0.235 Sum_probs=28.0
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCcc
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 415 (604)
+++|+.+.|.||+|+|||||+..++.......|
T Consensus 729 l~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~ 761 (1706)
T 3cmw_A 729 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGK 761 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCCceEEEECCCCCCcHHHHHHHHHHHHHcCC
Confidence 899999999999999999999888776544333
No 301
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=95.95 E-value=0.0037 Score=57.55 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 4689999999999999999987
No 302
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=95.90 E-value=0.004 Score=58.06 Aligned_cols=26 Identities=27% Similarity=0.332 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++..++|+|++||||||+.+.|+.-+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 27 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKY 27 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 36789999999999999999987643
No 303
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.86 E-value=0.01 Score=54.08 Aligned_cols=26 Identities=15% Similarity=0.282 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
++.-+++++|++|+|||||++.+.+-
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 35668999999999999999999874
No 304
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=95.84 E-value=0.0032 Score=58.30 Aligned_cols=27 Identities=22% Similarity=0.192 Sum_probs=18.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.++..+.|.|++||||||+.+.|...+
T Consensus 3 ~~~~~I~l~G~~GsGKST~a~~La~~l 29 (183)
T 2vli_A 3 MRSPIIWINGPFGVGKTHTAHTLHERL 29 (183)
T ss_dssp --CCEEEEECCC----CHHHHHHHHHS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhc
Confidence 457899999999999999999998654
No 305
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=95.74 E-value=0.0047 Score=57.47 Aligned_cols=24 Identities=29% Similarity=0.279 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
++.|.|++||||||+.+.|..-+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999988654
No 306
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=95.74 E-value=0.009 Score=53.88 Aligned_cols=21 Identities=24% Similarity=0.583 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy13349 388 KIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+++++|++|+|||||++.+.+
T Consensus 5 ~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999999987
No 307
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=95.72 E-value=0.0056 Score=58.74 Aligned_cols=27 Identities=30% Similarity=0.406 Sum_probs=23.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++|-.+.|+|++||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 467889999999999999999998754
No 308
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.69 E-value=0.016 Score=51.59 Aligned_cols=27 Identities=15% Similarity=0.167 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+.+.-+.|.||+|+|||++++.+....
T Consensus 25 ~~~~~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 25 KRTSPVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp TCSSCEEEEEETTCCHHHHHGGGCCTT
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhC
Confidence 345678899999999999999987654
No 309
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=95.68 E-value=0.0047 Score=58.13 Aligned_cols=22 Identities=45% Similarity=0.619 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+.
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~ 46 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGL 46 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhc
Confidence 6899999999999999999754
No 310
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.68 E-value=0.0036 Score=58.00 Aligned_cols=35 Identities=20% Similarity=0.189 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCc---cEEEECC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYDIKY---GEILIDG 421 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~I~i~g 421 (604)
..++|+|++|||||||+..|.+.+.... |.|..+.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~~ 42 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHG 42 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeCC
Confidence 4789999999999999999988765332 4455443
No 311
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=95.61 E-value=0.0059 Score=58.97 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.++..+.|+|++||||||+.+.|+.-+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l 31 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHF 31 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHS
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 457889999999999999999998654
No 312
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=95.61 E-value=0.0068 Score=57.23 Aligned_cols=26 Identities=31% Similarity=0.327 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++.+++|+|++||||||+.+.|...+
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~l 44 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEKL 44 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 35689999999999999999998754
No 313
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.59 E-value=0.0054 Score=61.08 Aligned_cols=24 Identities=38% Similarity=0.542 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
+++++|++|||||||++.+.|...
T Consensus 5 ~i~lvG~~g~GKTTL~n~l~g~~~ 28 (271)
T 3k53_A 5 TVALVGNPNVGKTTIFNALTGLRQ 28 (271)
T ss_dssp EEEEEECSSSSHHHHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 689999999999999999999753
No 314
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=95.56 E-value=0.0068 Score=55.37 Aligned_cols=25 Identities=28% Similarity=0.323 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
-+.++|.|+.||||||+.+.|...+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~l 31 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLAL 31 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHh
Confidence 4789999999999999999997643
No 315
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=95.55 E-value=0.0062 Score=54.84 Aligned_cols=22 Identities=27% Similarity=0.353 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 316
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=95.55 E-value=0.0063 Score=56.89 Aligned_cols=23 Identities=39% Similarity=0.522 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYL 24 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998765
No 317
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=95.55 E-value=0.0062 Score=58.09 Aligned_cols=23 Identities=39% Similarity=0.598 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++|.|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999996644
No 318
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=95.55 E-value=0.0058 Score=56.73 Aligned_cols=25 Identities=44% Similarity=0.523 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+.+++|+|++||||||+.+.|...+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~l 26 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKAL 26 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHc
Confidence 3468999999999999999998744
No 319
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=95.55 E-value=0.006 Score=57.58 Aligned_cols=23 Identities=22% Similarity=0.312 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++|.|++||||||+.+.|++.+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 89999999999999999998754
No 320
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=95.54 E-value=0.0057 Score=55.12 Aligned_cols=23 Identities=30% Similarity=0.479 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~~~ 26 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGGVE 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCCC-
T ss_pred EEEEECCCCCCHHHHHHHHcCcc
Confidence 68999999999999999998754
No 321
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=95.52 E-value=0.0053 Score=64.19 Aligned_cols=22 Identities=45% Similarity=0.647 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++|||++|+|||||++.|.+.
T Consensus 3 ~v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 3 AVGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp SEEEECCSSSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
No 322
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=95.51 E-value=0.0065 Score=56.46 Aligned_cols=25 Identities=24% Similarity=0.289 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.-+++++|++|||||||++.+.+-.
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998854
No 323
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=95.51 E-value=0.0066 Score=55.53 Aligned_cols=24 Identities=38% Similarity=0.505 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.+++|+|++||||||+.+.|...+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~l 26 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARAL 26 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHh
Confidence 468999999999999999998644
No 324
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=95.51 E-value=0.0099 Score=53.57 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998764
No 325
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=95.50 E-value=0.006 Score=58.66 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.+..+.|+|++||||||+.+.|+.-+
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l 29 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKY 29 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 326
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=95.49 E-value=0.0073 Score=54.86 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 68999999999999999998754
No 327
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=95.47 E-value=0.0072 Score=63.20 Aligned_cols=30 Identities=23% Similarity=0.494 Sum_probs=24.7
Q ss_pred eecceEEeCCcEEEEEcCCCCcHHHHHHHHh
Q psy13349 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLL 407 (604)
Q Consensus 377 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~ 407 (604)
++..+++.+ ...+|+|||||||||++.+|.
T Consensus 17 ~~~~i~f~~-gl~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 17 VNSRIKFEK-GIVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEECCS-EEEEEEECTTSSHHHHHHHHH
T ss_pred cceEEecCC-CeEEEECCCCCCHHHHHHHHH
Confidence 456666666 588899999999999998876
No 328
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.47 E-value=0.0071 Score=54.21 Aligned_cols=22 Identities=27% Similarity=0.465 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999988753
No 329
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=95.46 E-value=0.007 Score=57.13 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+..+++|.|++||||||+.+.|...+
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~~ 39 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKDY 39 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 35679999999999999999998654
No 330
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=95.45 E-value=0.0076 Score=54.46 Aligned_cols=23 Identities=43% Similarity=0.567 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 58999999999999999998643
No 331
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=95.43 E-value=0.0072 Score=59.38 Aligned_cols=24 Identities=46% Similarity=0.641 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
=+++|+|++|+|||||++.|+|--
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~~ 45 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQR 45 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 368999999999999999999854
No 332
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=95.43 E-value=0.0078 Score=54.82 Aligned_cols=23 Identities=43% Similarity=0.546 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l 24 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSL 24 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998743
No 333
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=95.42 E-value=0.0076 Score=53.91 Aligned_cols=23 Identities=43% Similarity=0.606 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998754
No 334
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=95.41 E-value=0.0074 Score=57.61 Aligned_cols=23 Identities=35% Similarity=0.567 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++|+|++||||||+.+.|+.-+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKY 24 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48899999999999999997654
No 335
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=95.40 E-value=0.0071 Score=54.08 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 336
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=95.38 E-value=0.0077 Score=54.02 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 6 ~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 6 KVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 337
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=95.36 E-value=0.0079 Score=55.88 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+.+++|+|++||||||+.+.|...+
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l 30 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999997644
No 338
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=95.36 E-value=0.0081 Score=56.80 Aligned_cols=23 Identities=39% Similarity=0.606 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
-.++|+|++||||||+.+.|...
T Consensus 13 ~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 13 MVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHh
Confidence 57899999999999999999875
No 339
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=95.36 E-value=0.0081 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999998755
No 340
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=95.35 E-value=0.015 Score=55.04 Aligned_cols=22 Identities=32% Similarity=0.489 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999987753
No 341
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=95.35 E-value=0.0081 Score=59.45 Aligned_cols=23 Identities=30% Similarity=0.380 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|||||||++.+.|-.
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999864
No 342
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=95.33 E-value=0.0083 Score=54.18 Aligned_cols=22 Identities=23% Similarity=0.279 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 343
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=95.33 E-value=0.0085 Score=59.34 Aligned_cols=26 Identities=35% Similarity=0.327 Sum_probs=22.7
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++..+.++|++||||||+.+.|...
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 35678999999999999999999875
No 344
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=95.33 E-value=0.0083 Score=53.94 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 345
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=95.32 E-value=4.4 Score=44.68 Aligned_cols=42 Identities=7% Similarity=0.013 Sum_probs=20.9
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13349 24 LISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIID 65 (604)
Q Consensus 24 ~~~~l~~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~id 65 (604)
.++.+.++.+.....+++.++.+++..+...+...++..+..
T Consensus 10 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~ 51 (595)
T 2yl4_A 10 LLGLAYPERRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYT 51 (595)
T ss_dssp HHHHHGGGHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334444443334444555555555555555555555555543
No 346
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.32 E-value=0.0084 Score=53.99 Aligned_cols=23 Identities=30% Similarity=0.364 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58999999999999999987643
No 347
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=95.31 E-value=0.0078 Score=54.29 Aligned_cols=22 Identities=41% Similarity=0.481 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999999864
No 348
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.30 E-value=0.0045 Score=62.52 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=19.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++-+++|.|++||||||+.+.|...+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998744
No 349
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=95.28 E-value=0.0087 Score=54.62 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 68999999999999999887643
No 350
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=95.28 E-value=0.0085 Score=54.64 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 11 KLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 351
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=95.28 E-value=0.0088 Score=54.48 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 9 KVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 352
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=95.28 E-value=0.012 Score=54.57 Aligned_cols=22 Identities=36% Similarity=0.585 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999874
No 353
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=95.25 E-value=0.0093 Score=58.45 Aligned_cols=26 Identities=27% Similarity=0.355 Sum_probs=22.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++-.++|.|++||||||+.+.|..-+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~ 53 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSH 53 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 56789999999999999999997644
No 354
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=95.25 E-value=0.0091 Score=59.70 Aligned_cols=24 Identities=29% Similarity=0.567 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
-+++++|++|+|||||++.+.|..
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999954
No 355
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=95.24 E-value=0.0085 Score=54.63 Aligned_cols=22 Identities=32% Similarity=0.540 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999875
No 356
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=95.22 E-value=0.0084 Score=55.73 Aligned_cols=24 Identities=42% Similarity=0.504 Sum_probs=21.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
--+++++|++|+|||||++.+.+-
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 457899999999999999999874
No 357
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=95.21 E-value=0.032 Score=63.99 Aligned_cols=23 Identities=22% Similarity=0.390 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.+.++||+|+|||++++.++...
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999876
No 358
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=95.21 E-value=0.0082 Score=59.89 Aligned_cols=23 Identities=43% Similarity=0.496 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.|.+--
T Consensus 10 ~I~vvG~~g~GKSTLin~L~~~~ 32 (274)
T 3t5d_A 10 TLMVVGESGLGKSTLINSLFLTD 32 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHSSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999987643
No 359
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=95.19 E-value=0.0094 Score=58.62 Aligned_cols=24 Identities=25% Similarity=0.481 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
-+++|.|++||||||+.+.|...+
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~l 46 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLL 46 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998744
No 360
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=95.17 E-value=0.0098 Score=53.52 Aligned_cols=22 Identities=32% Similarity=0.433 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999863
No 361
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=95.17 E-value=0.015 Score=56.34 Aligned_cols=24 Identities=21% Similarity=0.135 Sum_probs=18.2
Q ss_pred CCcE-EEEEcCCCCcHHHHHHHHhc
Q psy13349 385 PGEK-IGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 385 ~G~~-~~ivG~sGsGKSTl~~ll~~ 408 (604)
+|+. +.+.|+.|+||||++-.++.
T Consensus 4 ~g~l~I~~~~kgGvGKTt~a~~la~ 28 (228)
T 2r8r_A 4 RGRLKVFLGAAPGVGKTYAMLQAAH 28 (228)
T ss_dssp CCCEEEEEESSTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCcHHHHHHHHHH
Confidence 4664 78899999999999544443
No 362
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=95.17 E-value=0.0089 Score=55.33 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
-+++++|++|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHHcCc
Confidence 379999999999999999998764
No 363
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=95.12 E-value=0.01 Score=54.54 Aligned_cols=22 Identities=36% Similarity=0.573 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999864
No 364
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.11 E-value=0.01 Score=55.06 Aligned_cols=22 Identities=41% Similarity=0.392 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+++-
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999886
No 365
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=95.09 E-value=0.011 Score=53.12 Aligned_cols=21 Identities=43% Similarity=0.434 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy13349 388 KIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+++++|++|+|||||++.+.+
T Consensus 2 ki~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 589999999999999999875
No 366
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=95.08 E-value=0.0098 Score=54.86 Aligned_cols=23 Identities=39% Similarity=0.333 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEEECCCCCCHHHHHHHHhCcC
Confidence 58999999999999999998753
No 367
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=95.07 E-value=0.012 Score=53.64 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 8 ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 8 KIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 5899999999999999998864
No 368
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=95.06 E-value=0.016 Score=53.51 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 9 KIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 369
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=95.06 E-value=0.011 Score=54.57 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 370
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=95.06 E-value=0.011 Score=54.66 Aligned_cols=25 Identities=24% Similarity=0.115 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
+++++|++|+|||||++.+.|-+.+
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhccc
Confidence 6899999999999999999986643
No 371
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=95.04 E-value=0.011 Score=53.34 Aligned_cols=24 Identities=38% Similarity=0.400 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+.-+++++|++|+|||||++.+.+
T Consensus 6 ~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 6 REMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345799999999999999999975
No 372
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=95.00 E-value=0.013 Score=60.15 Aligned_cols=28 Identities=25% Similarity=0.408 Sum_probs=24.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
+++..+.|+||+|||||||...|+.-+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3567899999999999999999998663
No 373
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.98 E-value=0.0016 Score=75.21 Aligned_cols=46 Identities=20% Similarity=0.350 Sum_probs=37.9
Q ss_pred cceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECCEeCCC
Q psy13349 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN 426 (604)
Q Consensus 379 isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g~~~~~ 426 (604)
.++.+++|+.+.++||+|+|||||++++++... .+-+.+++.++..
T Consensus 504 ~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~--~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 504 LKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKGPELLT 549 (806)
T ss_dssp TCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHT--CCCCCCCCSSSTT
T ss_pred HhcCCCCCceeEEECCCCCCHHHHHHHHHHHhC--CCEEEEechHhhh
Confidence 467789999999999999999999999999874 3556677766543
No 374
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.98 E-value=0.012 Score=53.74 Aligned_cols=23 Identities=35% Similarity=0.346 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 68999999999999999988643
No 375
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.98 E-value=0.011 Score=53.75 Aligned_cols=22 Identities=18% Similarity=0.362 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999853
No 376
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=94.96 E-value=0.011 Score=59.30 Aligned_cols=23 Identities=39% Similarity=0.518 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
..+++|+|++||||||+.+.|..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999999985
No 377
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=94.94 E-value=0.012 Score=56.35 Aligned_cols=26 Identities=27% Similarity=0.491 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+|-.+.|+|++||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 378
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.92 E-value=0.013 Score=53.33 Aligned_cols=23 Identities=26% Similarity=0.322 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 17 KYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 379
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=94.91 E-value=0.012 Score=59.59 Aligned_cols=22 Identities=41% Similarity=0.590 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++|+|++|+|||||++.+.|-
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999985
No 380
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.90 E-value=0.013 Score=54.28 Aligned_cols=22 Identities=36% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999864
No 381
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=94.90 E-value=0.013 Score=53.50 Aligned_cols=22 Identities=36% Similarity=0.511 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6899999999999999999865
No 382
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.89 E-value=0.021 Score=52.19 Aligned_cols=21 Identities=29% Similarity=0.540 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy13349 388 KIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+++++|++|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999883
No 383
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=94.88 E-value=0.013 Score=53.66 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 6899999999999999999863
No 384
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.84 E-value=0.0089 Score=54.85 Aligned_cols=24 Identities=38% Similarity=0.387 Sum_probs=21.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+.-+++++|++|+|||||++.+.+
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 455899999999999999999874
No 385
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.83 E-value=0.018 Score=54.50 Aligned_cols=35 Identities=26% Similarity=0.282 Sum_probs=26.9
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.++..-+.+ .|..+.|+||||||||||+..|..-.
T Consensus 24 ~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 24 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 455544443 58899999999999999998887643
No 386
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=94.78 E-value=0.013 Score=53.79 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999998764
No 387
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.78 E-value=0.014 Score=57.50 Aligned_cols=24 Identities=46% Similarity=0.628 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
-+++|+|++|+|||||++.++|-.
T Consensus 23 ~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 23 LRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTSC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 368999999999999999998743
No 388
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=94.76 E-value=0.015 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999999864
No 389
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=94.76 E-value=0.015 Score=53.42 Aligned_cols=22 Identities=32% Similarity=0.531 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 20 KLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5789999999999999998854
No 390
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=94.75 E-value=0.05 Score=56.12 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=31.0
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~ 561 (604)
++.++++||+- .++......+.+.+.+...+..+|++|++..
T Consensus 119 ~~~vliiDe~~-~l~~~~~~~Ll~~le~~~~~~~~Il~~~~~~ 160 (373)
T 1jr3_A 119 RFKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQ 160 (373)
T ss_dssp SSEEEEEECGG-GSCHHHHHHHHHHHHSCCSSEEEEEEESCGG
T ss_pred CeEEEEEECcc-hhcHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 57899999964 4778777788887766444566777787665
No 391
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.72 E-value=0.0076 Score=64.61 Aligned_cols=43 Identities=30% Similarity=0.462 Sum_probs=33.1
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEE
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~ 418 (604)
+++.+ ..+-+|++.+|+|+||+|||||++.|.+-.....|.+.
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~~~~~~i~ 183 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIAQEHGGIS 183 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHHHHTCCCE
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhhhccCcEE
Confidence 45555 67789999999999999999999998876543334443
No 392
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=94.71 E-value=0.015 Score=54.40 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 16 ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 16 KVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999754
No 393
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=94.71 E-value=0.021 Score=53.13 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
-+++++|++|+|||||++.+.+-
T Consensus 18 ~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 18 LQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp EEEEEECCTTSCHHHHHHHHSCC
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999873
No 394
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.70 E-value=0.1 Score=65.16 Aligned_cols=38 Identities=16% Similarity=0.221 Sum_probs=28.9
Q ss_pred ceeeecce--EEeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 374 LIINNLSL--TIQPGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 374 ~~l~~isl--~i~~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
+-|+.+-= =+++|+.+.|.||+|+|||||+.-++.-..
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a 408 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQ 408 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 44555421 389999999999999999999876665443
No 395
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=94.70 E-value=0.016 Score=53.41 Aligned_cols=26 Identities=23% Similarity=0.235 Sum_probs=22.0
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
++.=+++++|++|+|||||++.+.+-
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 34567999999999999999999863
No 396
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=94.70 E-value=0.016 Score=54.44 Aligned_cols=23 Identities=30% Similarity=0.492 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 68999999999999999998753
No 397
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.69 E-value=0.015 Score=55.21 Aligned_cols=24 Identities=25% Similarity=0.315 Sum_probs=21.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
-+++++|++|+|||||++.+.+-.
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998754
No 398
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=94.69 E-value=0.015 Score=54.23 Aligned_cols=22 Identities=36% Similarity=0.557 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999764
No 399
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=94.69 E-value=0.015 Score=54.32 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.|.
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999863
No 400
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.68 E-value=0.015 Score=59.04 Aligned_cols=23 Identities=39% Similarity=0.537 Sum_probs=21.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
-+|+|+|++|+|||||++.|.|-
T Consensus 11 g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 11 GYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 47899999999999999999985
No 401
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=94.67 E-value=0.015 Score=55.46 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~ 24 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKY 24 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998744
No 402
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.66 E-value=0.016 Score=53.63 Aligned_cols=22 Identities=27% Similarity=0.332 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5899999999999999998753
No 403
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=94.65 E-value=0.12 Score=64.62 Aligned_cols=37 Identities=16% Similarity=0.248 Sum_probs=32.2
Q ss_pred CCceeeecc--eEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 372 KHLIINNLS--LTIQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 372 ~~~~l~~is--l~i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+.+.|+++. .-+++|+.+.+.||+|||||||+..+.-
T Consensus 1065 Gi~~Ld~~lg~ggi~~g~~vll~G~~GtGKT~la~~~~~ 1103 (2050)
T 3cmu_A 1065 GSLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIA 1103 (2050)
T ss_dssp SCHHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcHHHHHHhccCCcCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 456788887 5799999999999999999999988763
No 404
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=94.65 E-value=0.017 Score=55.72 Aligned_cols=23 Identities=39% Similarity=0.588 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++.|.|++||||||+.+.|...+
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~l 24 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKY 24 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999997654
No 405
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.64 E-value=0.015 Score=54.04 Aligned_cols=22 Identities=23% Similarity=0.459 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
=+++++|++|+|||||++.+.+
T Consensus 9 ~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 9 YRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp EEEEEEECTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHc
Confidence 3789999999999999999987
No 406
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=94.63 E-value=0.017 Score=54.07 Aligned_cols=22 Identities=27% Similarity=0.271 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 10 KILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 407
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=94.63 E-value=0.018 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=23.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
..+..+.|+||+|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345778999999999999999988765
No 408
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=94.62 E-value=0.014 Score=55.76 Aligned_cols=25 Identities=36% Similarity=0.364 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+.+++|+|++||||||+.+.|...+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4679999999999999999998865
No 409
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=94.62 E-value=0.019 Score=55.60 Aligned_cols=26 Identities=35% Similarity=0.496 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++..+.|+|+.||||||+.+.|+.-+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999999998755
No 410
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=94.61 E-value=0.017 Score=52.95 Aligned_cols=21 Identities=24% Similarity=0.248 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy13349 388 KIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+++++|++|+|||||++.+.+
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999998875
No 411
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.58 E-value=0.016 Score=54.44 Aligned_cols=24 Identities=17% Similarity=0.306 Sum_probs=21.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
=+++++|++|+|||||++.+.+-.
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEEECCCCcCHHHHHHHHHhCC
Confidence 478999999999999999998753
No 412
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=94.58 E-value=0.0095 Score=56.78 Aligned_cols=25 Identities=44% Similarity=0.497 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.-+++++|++|+|||||++.+.+-.
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999998853
No 413
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=94.57 E-value=0.017 Score=53.87 Aligned_cols=22 Identities=18% Similarity=0.409 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~~ 49 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTDD 49 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC-
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 414
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=94.57 E-value=0.022 Score=52.77 Aligned_cols=23 Identities=35% Similarity=0.351 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 18 ki~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 18 KLLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 58999999999999999998743
No 415
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=94.57 E-value=0.025 Score=53.59 Aligned_cols=22 Identities=32% Similarity=0.468 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999875
No 416
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=94.56 E-value=0.017 Score=55.48 Aligned_cols=23 Identities=35% Similarity=0.460 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
-+++++|++|+|||||++.+.+-
T Consensus 30 ~kI~vvG~~~vGKSsLin~l~~~ 52 (228)
T 2qu8_A 30 KTIILSGAPNVGKSSFMNIVSRA 52 (228)
T ss_dssp EEEEEECSTTSSHHHHHHHHTTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47899999999999999999874
No 417
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.55 E-value=0.016 Score=56.29 Aligned_cols=29 Identities=28% Similarity=0.336 Sum_probs=22.3
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
..+|.++.+-|++||||||+++.|...+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999999987664
No 418
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.54 E-value=0.097 Score=53.05 Aligned_cols=43 Identities=12% Similarity=0.227 Sum_probs=32.0
Q ss_pred CCCeEEEeccCCCCC-HHHHHHHHHHHHHHhCCcEEEEEccChhH
Q psy13349 519 NAPILLLDEATSALD-SEAEIAIQKSLYNLMKGKTVIAIAHRLST 562 (604)
Q Consensus 519 ~p~ililDE~ts~LD-~~~~~~i~~~i~~~~~~~t~i~itH~l~~ 562 (604)
+++++++||+-. +. .+....+.+.+.+...+..+|++|++...
T Consensus 105 ~~~vliiDEi~~-l~~~~~~~~L~~~le~~~~~~~iI~~~n~~~~ 148 (324)
T 3u61_B 105 RQKVIVIDEFDR-SGLAESQRHLRSFMEAYSSNCSIIITANNIDG 148 (324)
T ss_dssp CEEEEEEESCCC-GGGHHHHHHHHHHHHHHGGGCEEEEEESSGGG
T ss_pred CCeEEEEECCcc-cCcHHHHHHHHHHHHhCCCCcEEEEEeCCccc
Confidence 789999999854 44 66667777777766566788888888763
No 419
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.54 E-value=0.017 Score=57.68 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|||||||++.+.|-.
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
No 420
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.53 E-value=0.016 Score=53.75 Aligned_cols=23 Identities=22% Similarity=0.215 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 58899999999999999988643
No 421
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=94.53 E-value=0.018 Score=56.90 Aligned_cols=23 Identities=30% Similarity=0.417 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.|-.
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 68999999999999999999854
No 422
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=94.53 E-value=0.02 Score=58.14 Aligned_cols=25 Identities=20% Similarity=0.408 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+..++|+||||||||||...|+.-+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 5678999999999999999998765
No 423
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.52 E-value=0.018 Score=53.48 Aligned_cols=22 Identities=27% Similarity=0.338 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 23 KYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999864
No 424
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=94.52 E-value=0.016 Score=55.93 Aligned_cols=29 Identities=24% Similarity=0.405 Sum_probs=25.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+.++..++.|+||+||||+|..+.|+.-|
T Consensus 25 ~~~k~kiI~llGpPGsGKgTqa~~L~~~~ 53 (217)
T 3umf_A 25 KLAKAKVIFVLGGPGSGKGTQCEKLVQKF 53 (217)
T ss_dssp CTTSCEEEEEECCTTCCHHHHHHHHHHHH
T ss_pred hccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45667889999999999999999998765
No 425
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.49 E-value=0.021 Score=52.13 Aligned_cols=25 Identities=20% Similarity=0.009 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+-=+++++|++|+|||||++.+.+-
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3457999999999999999998863
No 426
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=94.48 E-value=0.018 Score=59.24 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
..++|+||||||||||.+.|+.-+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 4799999999999999999988664
No 427
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.44 E-value=0.019 Score=53.05 Aligned_cols=24 Identities=33% Similarity=0.350 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+.=+++++|++|+|||||++.+.+
T Consensus 15 ~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 15 QEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp SCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 345789999999999999999985
No 428
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=94.44 E-value=0.019 Score=53.95 Aligned_cols=22 Identities=27% Similarity=0.492 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIEN 48 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6899999999999999999764
No 429
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=94.43 E-value=0.019 Score=53.35 Aligned_cols=22 Identities=27% Similarity=0.308 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999874
No 430
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.41 E-value=0.02 Score=53.12 Aligned_cols=22 Identities=32% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6899999999999999999863
No 431
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=94.41 E-value=0.016 Score=53.82 Aligned_cols=24 Identities=29% Similarity=0.246 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
=+++++|++|+|||||++.+.+-.
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 22 VHVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEEECTTSSHHHHHHHTSCGG
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 368999999999999999998754
No 432
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.40 E-value=0.019 Score=53.12 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.8
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
-.|.-+.|.|+||+||||++..|..
T Consensus 14 v~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHHHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4588999999999999999987754
No 433
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.40 E-value=0.02 Score=53.38 Aligned_cols=23 Identities=35% Similarity=0.550 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
=+++++|++|+|||||++.+.+-
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999998864
No 434
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=94.38 E-value=0.022 Score=56.60 Aligned_cols=30 Identities=33% Similarity=0.338 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCccE
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 416 (604)
.+++++|.+|+|||||+|.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 589999999999999999999876544443
No 435
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=94.37 E-value=0.017 Score=53.07 Aligned_cols=22 Identities=36% Similarity=0.344 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999863
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.37 E-value=0.02 Score=53.56 Aligned_cols=24 Identities=33% Similarity=0.321 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
.=+++++|++|+|||||++.+.+-
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 347899999999999999999864
No 437
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.37 E-value=0.02 Score=52.89 Aligned_cols=23 Identities=35% Similarity=0.375 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
=+++++|++|+|||||++.+.+-
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36899999999999999999764
No 438
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.37 E-value=0.02 Score=53.91 Aligned_cols=24 Identities=38% Similarity=0.351 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
.=+++++|++|+|||||++.+.+-
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 347899999999999999999854
No 439
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=94.36 E-value=0.019 Score=54.01 Aligned_cols=22 Identities=36% Similarity=0.391 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 440
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.36 E-value=0.019 Score=54.18 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
--+++++|++|+|||||++.+.+-
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 347999999999999999999874
No 441
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.34 E-value=0.022 Score=54.63 Aligned_cols=29 Identities=34% Similarity=0.344 Sum_probs=25.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
.+|.++.+-|++||||||+++.|...+..
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~~ 32 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLRE 32 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 46899999999999999999999876653
No 442
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=94.33 E-value=0.019 Score=54.63 Aligned_cols=24 Identities=17% Similarity=0.337 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
-.++++|++|||||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468999999999999999888753
No 443
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=94.32 E-value=0.021 Score=53.38 Aligned_cols=25 Identities=28% Similarity=0.453 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
=+++++|++|+|||||++.+.+-+.
T Consensus 21 ~ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 21 PRILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp CEEEEEESTTSSHHHHHHHHHSCCC
T ss_pred eEEEEECCCCCCHHHHHHHHHhcCC
Confidence 3689999999999999999888543
No 444
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.31 E-value=0.016 Score=52.86 Aligned_cols=22 Identities=27% Similarity=0.551 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999998763
No 445
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=94.27 E-value=0.022 Score=52.79 Aligned_cols=22 Identities=36% Similarity=0.650 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6899999999999999888753
No 446
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=94.27 E-value=0.024 Score=53.80 Aligned_cols=23 Identities=30% Similarity=0.274 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~~ 49 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDNK 49 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998743
No 447
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=94.24 E-value=0.024 Score=52.98 Aligned_cols=24 Identities=29% Similarity=0.317 Sum_probs=20.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
.=+++++|++|+|||||++.+.+-
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999998864
No 448
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=94.24 E-value=0.022 Score=54.12 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhc
Q psy13349 388 KIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+++++|++|+|||||++.+.+
T Consensus 36 ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 689999999999999999986
No 449
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=94.23 E-value=0.022 Score=56.36 Aligned_cols=23 Identities=30% Similarity=0.456 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+.|--
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999843
No 450
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.23 E-value=0.024 Score=55.34 Aligned_cols=27 Identities=30% Similarity=0.357 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
+|.++.+.|++||||||+++.|...+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987664
No 451
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=94.22 E-value=0.021 Score=57.79 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
.++++|++|||||||++.|+|.-
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~ 48 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRD 48 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999875
No 452
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=94.19 E-value=0.022 Score=56.55 Aligned_cols=23 Identities=30% Similarity=0.447 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++++|++|+|||||++.+++-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999754
No 453
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.18 E-value=0.051 Score=54.72 Aligned_cols=42 Identities=17% Similarity=0.279 Sum_probs=29.5
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~ 561 (604)
++.++++||+- .++......+.+.+.+...+..+|++|++.+
T Consensus 107 ~~~viiiDe~~-~l~~~~~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 107 KHKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp CCEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEECcc-cCCHHHHHHHHHHHhccCCCceEEEEeCChh
Confidence 47899999964 3566666667777766545667777777754
No 454
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=94.15 E-value=0.016 Score=53.15 Aligned_cols=22 Identities=32% Similarity=0.385 Sum_probs=9.4
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEECCCCC------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999988754
No 455
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=94.14 E-value=0.032 Score=52.73 Aligned_cols=24 Identities=25% Similarity=0.224 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
-+++++|++|+|||||++.+.+-.
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999988643
No 456
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=94.12 E-value=0.024 Score=56.93 Aligned_cols=22 Identities=32% Similarity=0.412 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhc
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
..+.|+|++||||||+.+.|..
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999986
No 457
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=94.09 E-value=0.023 Score=53.32 Aligned_cols=22 Identities=23% Similarity=0.369 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 27 KLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6899999999999999999874
No 458
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=94.09 E-value=0.023 Score=53.05 Aligned_cols=25 Identities=36% Similarity=0.337 Sum_probs=21.5
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
++.=+++++|++|+|||||++.+.+
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 3455799999999999999999865
No 459
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=94.08 E-value=0.022 Score=57.06 Aligned_cols=24 Identities=29% Similarity=0.385 Sum_probs=21.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
=+++++|++|+|||||++.|.|--
T Consensus 27 ~~i~vvG~~~~GKSSLln~l~g~~ 50 (299)
T 2aka_B 27 PQIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred CeEEEEeCCCCCHHHHHHHHHCCC
Confidence 368999999999999999999864
No 460
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=94.07 E-value=0.028 Score=53.96 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
+|.++.+-|++||||||.++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987664
No 461
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=94.02 E-value=0.028 Score=54.33 Aligned_cols=28 Identities=29% Similarity=0.424 Sum_probs=24.9
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
.+|..+.+.|++||||||+++.|...+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999987654
No 462
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.02 E-value=0.026 Score=54.86 Aligned_cols=27 Identities=30% Similarity=0.471 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
+|..++|.|+.||||||+++.|...+.
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 467899999999999999999998763
No 463
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=94.01 E-value=0.028 Score=53.73 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.|.
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~ 60 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGV 60 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 464
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=94.01 E-value=0.025 Score=57.75 Aligned_cols=25 Identities=28% Similarity=0.315 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
..+.|+||+|||||||.+.|+.-+.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4789999999999999999998653
No 465
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.96 E-value=0.03 Score=53.91 Aligned_cols=29 Identities=28% Similarity=0.314 Sum_probs=26.2
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
++|..+.+-|++||||||+++.|...+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999887764
No 466
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=93.94 E-value=0.023 Score=51.93 Aligned_cols=29 Identities=24% Similarity=0.187 Sum_probs=24.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
..+..+.|+||+|+||||+++.+......
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~ 69 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQ 69 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHT
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHh
Confidence 44667899999999999999999876543
No 467
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.92 E-value=0.027 Score=52.29 Aligned_cols=22 Identities=23% Similarity=0.187 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 468
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=93.83 E-value=0.02 Score=56.51 Aligned_cols=28 Identities=36% Similarity=0.475 Sum_probs=24.6
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYD 411 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~ 411 (604)
++|.+++|.|+.||||||+++.|...+.
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 5788999999999999999999988763
No 469
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=93.82 E-value=0.031 Score=56.73 Aligned_cols=26 Identities=42% Similarity=0.797 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++-+++++|++|+|||||++.+.+-+
T Consensus 2 ~~~KI~lvG~~~vGKSSLi~~l~~~~ 27 (307)
T 3r7w_A 2 LGSKLLLMGRSGSGKSSMRSIIFSNY 27 (307)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHSCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHhCC
Confidence 45689999999999999999987653
No 470
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=93.81 E-value=0.032 Score=56.54 Aligned_cols=25 Identities=24% Similarity=0.357 Sum_probs=22.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
...+.|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998765
No 471
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.76 E-value=0.057 Score=62.77 Aligned_cols=35 Identities=23% Similarity=0.193 Sum_probs=26.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCCCCCcc-EEEECC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFYDIKYG-EILIDG 421 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~I~i~g 421 (604)
..+.|+||+|+|||++++.|........+ -|.+|.
T Consensus 589 ~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~ 624 (854)
T 1qvr_A 589 GSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 624 (854)
T ss_dssp EEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEec
Confidence 47899999999999999999987754333 344443
No 472
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.75 E-value=0.54 Score=50.86 Aligned_cols=35 Identities=29% Similarity=0.146 Sum_probs=27.3
Q ss_pred eeeecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 375 ~l~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
.|+.+.--+++|+.+.|.|++|+|||||+.-++.-
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~ 265 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQ 265 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHH
Confidence 35554335899999999999999999998655543
No 473
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=93.75 E-value=0.029 Score=53.59 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
-+++++|++|+|||||++-+++-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 378999999999999998887653
No 474
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=93.70 E-value=0.012 Score=58.25 Aligned_cols=31 Identities=32% Similarity=0.472 Sum_probs=24.2
Q ss_pred eecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 377 ~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
.+.....++| +.|.||+|+||||+++.+++.
T Consensus 37 ~~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 37 ANLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HHCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 3344444555 789999999999999999874
No 475
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=93.70 E-value=0.016 Score=55.08 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 13 ki~vvG~~~~GKSsli~~l~~~ 34 (218)
T 4djt_A 13 KICLIGDGGVGKTTYINRVLDG 34 (218)
T ss_dssp EEEEECCTTSSHHHHHCBCTTC
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6899999999999999988853
No 476
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=93.64 E-value=0.023 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=20.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+.=+++++|++|+|||||++.+.+
T Consensus 21 ~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 21 RKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHc
Confidence 445799999999999999999854
No 477
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=93.62 E-value=0.032 Score=52.39 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhhC
Confidence 5899999999999999998764
No 478
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.59 E-value=0.046 Score=52.85 Aligned_cols=25 Identities=28% Similarity=0.500 Sum_probs=22.2
Q ss_pred EEeCCcEEEEEcCCCCcHHHHHHHH
Q psy13349 382 TIQPGEKIGLVGRSGAGKSTINNLL 406 (604)
Q Consensus 382 ~i~~G~~~~ivG~sGsGKSTl~~ll 406 (604)
=+++|+.+.|.|++|+|||||+.-+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~ 50 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQF 50 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHH
Confidence 3899999999999999999998543
No 479
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.58 E-value=0.014 Score=60.80 Aligned_cols=33 Identities=27% Similarity=0.244 Sum_probs=29.1
Q ss_pred ecceEEeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 378 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
|.=+.|-+|++.+|+|++|+|||||+..|.+..
T Consensus 167 D~l~PigrGQR~lIfg~~g~GKT~Ll~~Ia~~i 199 (427)
T 3l0o_A 167 DLFAPIGKGQRGMIVAPPKAGKTTILKEIANGI 199 (427)
T ss_dssp HHHSCCBTTCEEEEEECTTCCHHHHHHHHHHHH
T ss_pred hhcccccCCceEEEecCCCCChhHHHHHHHHHH
Confidence 556778999999999999999999998888753
No 480
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.57 E-value=0.033 Score=52.49 Aligned_cols=23 Identities=22% Similarity=0.195 Sum_probs=20.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
.=+++++|++|+|||||++.+.+
T Consensus 30 ~~ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 30 AIKCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHh
Confidence 44789999999999999988874
No 481
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=93.50 E-value=0.039 Score=56.21 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=27.9
Q ss_pred ceeeecc-eEEeCCcEEEEEcCCCCcHHHHHHHHhc
Q psy13349 374 LIINNLS-LTIQPGEKIGLVGRSGAGKSTINNLLLR 408 (604)
Q Consensus 374 ~~l~~is-l~i~~G~~~~ivG~sGsGKSTl~~ll~~ 408 (604)
+.|+.+- =-+++|+.+.|.||+|||||||+.-++.
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3454432 3589999999999999999999977764
No 482
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=93.45 E-value=0.038 Score=52.78 Aligned_cols=22 Identities=41% Similarity=0.569 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++++|++|+|||||++.+.+-
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6899999999999999999864
No 483
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=93.43 E-value=0.22 Score=61.31 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=28.5
Q ss_pred Cceeeecce--EEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 373 HLIINNLSL--TIQPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 373 ~~~l~~isl--~i~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
.+-|+.+-= =+++|+.+.|.||+|+|||||+--++.-
T Consensus 368 i~~LD~lLg~GGl~~G~lilI~G~pGsGKTtLaLq~a~~ 406 (1706)
T 3cmw_A 368 SLSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAA 406 (1706)
T ss_dssp CHHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred cHHHHHHhccCCcCCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 345666521 3899999999999999999998666543
No 484
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=93.43 E-value=0.018 Score=53.92 Aligned_cols=23 Identities=26% Similarity=0.430 Sum_probs=4.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
=+++++|++|+|||||++.+.+-
T Consensus 21 ~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 21 CKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEC-----------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36899999999999999988754
No 485
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=93.41 E-value=0.038 Score=52.52 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
=+++++|++|+|||||++.+.+-
T Consensus 28 ~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 28 CKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999988764
No 486
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=93.41 E-value=0.1 Score=56.26 Aligned_cols=77 Identities=16% Similarity=0.176 Sum_probs=54.6
Q ss_pred cccccCCCCCChhHHHHHHHH--HHHcc---------------CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEE
Q psy13349 493 AHVGEHGIKLSGGQRQRIAIA--RVILK---------------NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIA 555 (604)
Q Consensus 493 t~v~e~g~~LSgGq~QrialA--Rall~---------------~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~ 555 (604)
+........+||||+|-.-+| -|++. .=.+++|||| |-+|++..+..++.++++ |-=+|+
T Consensus 371 ~~~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQlii 447 (483)
T 3euj_A 371 GWMRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLI 447 (483)
T ss_dssp EEEECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEE
T ss_pred ceeecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEE
Confidence 445555668999999953222 22221 1147999999 999999999999999876 556667
Q ss_pred EccChhHHhhcCeEEEEe
Q psy13349 556 IAHRLSTISAMDRLIVLD 573 (604)
Q Consensus 556 itH~l~~~~~~d~i~vl~ 573 (604)
+|-. .....+|.++.+-
T Consensus 448 atP~-~i~p~v~~~~~~~ 464 (483)
T 3euj_A 448 AAPE-NISPERGTTYKLV 464 (483)
T ss_dssp EESS-SCCCSSSEEEECC
T ss_pred ECcc-hhhhccCceEEEE
Confidence 7666 4445579888773
No 487
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=93.37 E-value=0.013 Score=62.62 Aligned_cols=36 Identities=28% Similarity=0.277 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCCCccEEEECC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~I~i~g 421 (604)
...++++|++|+||||++..|++.+.....++.+-.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 368999999999999999999998765444555433
No 488
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=93.19 E-value=0.052 Score=54.42 Aligned_cols=27 Identities=26% Similarity=0.231 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 386 GEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 386 G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
+-.++++|.+|+|||||+|.|.|-...
T Consensus 120 ~~~v~~vG~~nvGKSsliN~l~~~~~~ 146 (282)
T 1puj_A 120 AIRALIIGIPNVGKSTLINRLAKKNIA 146 (282)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC
T ss_pred CceEEEEecCCCchHHHHHHHhcCcee
Confidence 347999999999999999999986543
No 489
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=93.15 E-value=0.047 Score=52.05 Aligned_cols=23 Identities=30% Similarity=0.362 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++.|+||+||||+|..+.|+.-|
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~ 24 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEK 24 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999999866
No 490
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.14 E-value=0.042 Score=51.78 Aligned_cols=23 Identities=22% Similarity=0.102 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
=+++++|++|+|||||++.+.+-
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999998753
No 491
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=93.09 E-value=0.044 Score=57.56 Aligned_cols=24 Identities=29% Similarity=0.488 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 387 EKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 387 ~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
..++|+||||||||||...|+.-+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999888655
No 492
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.03 E-value=0.24 Score=50.60 Aligned_cols=42 Identities=17% Similarity=0.134 Sum_probs=29.4
Q ss_pred CCCeEEEeccCCCCCHHHHHHHHHHHHHHhCCcEEEEEccChh
Q psy13349 519 NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561 (604)
Q Consensus 519 ~p~ililDE~ts~LD~~~~~~i~~~i~~~~~~~t~i~itH~l~ 561 (604)
+++|+|+||+- .|.......+.+.+.+-.++..+|++|++.+
T Consensus 108 ~~kvviIdead-~l~~~a~naLLk~lEep~~~~~~Il~t~~~~ 149 (334)
T 1a5t_A 108 GAKVVWVTDAA-LLTDAAANALLKTLEEPPAETWFFLATREPE 149 (334)
T ss_dssp SCEEEEESCGG-GBCHHHHHHHHHHHTSCCTTEEEEEEESCGG
T ss_pred CcEEEEECchh-hcCHHHHHHHHHHhcCCCCCeEEEEEeCChH
Confidence 57899999985 3566666667777655334556777888875
No 493
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=93.02 E-value=0.044 Score=57.17 Aligned_cols=25 Identities=32% Similarity=0.440 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
++..++++|++|+|||||+|.|.|-
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 5778999999999999999999986
No 494
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=92.82 E-value=0.036 Score=52.75 Aligned_cols=28 Identities=18% Similarity=0.285 Sum_probs=25.1
Q ss_pred EeCCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 383 IQPGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 383 i~~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+|+...+.+.||.|+||||++..|+..+
T Consensus 55 iPkkn~ili~GPPGtGKTt~a~ala~~l 82 (212)
T 1tue_A 55 TPKKNCLVFCGPANTGKSYFGMSFIHFI 82 (212)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCcccEEEEECCCCCCHHHHHHHHHHHh
Confidence 6777789999999999999999998875
No 495
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=92.64 E-value=0.071 Score=54.99 Aligned_cols=32 Identities=28% Similarity=0.402 Sum_probs=25.6
Q ss_pred ecceEEeCCcEEEEEcCCCCcHHHHHHHHhcC
Q psy13349 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 378 ~isl~i~~G~~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
.+.++++---.|+++|.+++|||||++.+.+-
T Consensus 150 ~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 150 YIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 44555555557999999999999999999864
No 496
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=92.62 E-value=0.047 Score=56.95 Aligned_cols=26 Identities=31% Similarity=0.529 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 385 PGEKIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 385 ~G~~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
++..++++|++|+|||||+|.|.|-.
T Consensus 159 ~~~~i~~vG~~nvGKStliN~L~~~~ 184 (368)
T 3h2y_A 159 GGKDVYVVGCTNVGKSTFINRMIKEF 184 (368)
T ss_dssp TTSCEEEEEBTTSSHHHHHHHHHHHH
T ss_pred ccceEEEecCCCCChhHHHHHHHhhh
Confidence 67899999999999999999999863
No 497
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=92.34 E-value=0.058 Score=57.54 Aligned_cols=22 Identities=41% Similarity=0.516 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHhcC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRF 409 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~ 409 (604)
+++|||++|+|||||++.|.|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999884
No 498
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=92.32 E-value=0.063 Score=56.58 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY 410 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~ 410 (604)
+++|||++++|||||++.|.+--
T Consensus 2 kI~ivG~pnvGKSTL~n~L~~~~ 24 (397)
T 1wxq_A 2 EIGVVGKPNVGKSTFFSAATLVD 24 (397)
T ss_dssp EEEEEECTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 58999999999999999999853
No 499
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=92.32 E-value=0.1 Score=55.72 Aligned_cols=36 Identities=28% Similarity=0.346 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHhcCC----C--------CCccEEEECCEe
Q psy13349 388 KIGLVGRSGAGKSTINNLLLRFY----D--------IKYGEILIDGQN 423 (604)
Q Consensus 388 ~~~ivG~sGsGKSTl~~ll~~~~----~--------~~~G~I~i~g~~ 423 (604)
+++|||++++|||||++.+.|-- . ...|.+.++|..
T Consensus 3 ~v~ivG~pnvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~~~~ 50 (439)
T 1mky_A 3 TVLIVGRPNVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWYGKT 50 (439)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--------------CCSEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEECCeE
Confidence 68999999999999999998753 1 234567777754
No 500
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=92.30 E-value=0.059 Score=58.57 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=26.1
Q ss_pred eCCcEEEEEcCCCCcHHHHHHHHhcCCCC
Q psy13349 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDI 412 (604)
Q Consensus 384 ~~G~~~~ivG~sGsGKSTl~~ll~~~~~~ 412 (604)
+.|-.+.++|.+||||||+.+.|+.-+..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56789999999999999999999988764
Done!