RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13349
(604 letters)
>gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and
permease components [Defense mechanisms].
Length = 567
Score = 407 bits (1048), Expect = e-136
Identities = 196/569 (34%), Positives = 305/569 (53%), Gaps = 15/569 (2%)
Query: 33 YGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILIS 92
Y K +LL I L+ LL +G+IID L LL +LLL + +
Sbjct: 10 YLKYKLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELLE-----LLLLLLLLALL 64
Query: 93 STVFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIR 152
V LQ+ L LR + +L ++FF + +G + +++ A+
Sbjct: 65 GGVLRALQSYLGS-RLGQKIVADLRRDLFEKLLRLPLSFFDKAKSGDLISRLTNDVEAVS 123
Query: 153 DIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFIP-RLNKTAES 211
++ + ++ + ++ L ++ + + + ++ I + ++ + + K +
Sbjct: 124 NLVSTVLVLVFTSILLLIGSLVLLFSLSWRLAL-ILLLILPLLALVLSLLARKSRKLSRR 182
Query: 212 QATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIIN 271
A + R+ ++ + I +K F RE A + + + RL + +
Sbjct: 183 VREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLM 242
Query: 272 HLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTI 331
LL+ L + FL G L +GA+AA LRL + ++ L +
Sbjct: 243 LLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAA 302
Query: 332 QDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGL 391
+ +L ++ ++ D + + T G I F+NVSFSY K ++ ++S +I+PGEK+ +
Sbjct: 303 ERLFELLDEEPEVEDPPDPLK--DTIGSIEFENVSFSYPGKKPVLKDISFSIEPGEKVAI 360
Query: 392 VGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIR 451
VG SG+GKST+ LLLR YD GEILIDG +I ++S +SLR++IG+V+QD L +IR
Sbjct: 361 VGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIR 420
Query: 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511
+NI GRPDA++ E+ A K A A FI +L D GYD VGE G+ LSGGQRQR+A
Sbjct: 421 ENIALGRPDATDEEIEEALKLANAHEFIANLPD-----GYDTIVGERGVNLSGGQRQRLA 475
Query: 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIV 571
IAR +L+N PIL+LDEATSALD+E E IQ +L L+KG+T + IAHRLSTI DR+IV
Sbjct: 476 IARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIV 535
Query: 572 LDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
LDNG + E G+H +LL K GLY+RL++ Q
Sbjct: 536 LDNGRIVERGTHEELLAKGGLYARLYQAQ 564
>gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of
iron-sulfur clusters transporter, subfamily C. ATM1 is
an ABC transporter that is expressed in the
mitochondria. Although the specific function of ATM1 is
unknown, its disruption results in the accumulation of
excess mitochondrial iron, loss of mitochondrial
cytochromes, oxidative damage to mitochondrial DNA, and
decreased levels of cytosolic heme proteins. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 236
Score = 331 bits (850), Expect = e-111
Identities = 129/241 (53%), Positives = 169/241 (70%), Gaps = 5/241 (2%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F+NV+F+YD ++ ++S TI G+K+ +VG SG+GKSTI LL RFYD+ G ILI
Sbjct: 1 IEFENVTFAYDPGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILI 60
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFI 479
DGQ+I V+ +SLR IG+V QDT L + +I NI YGRPDA++ E+ AAK A+ I
Sbjct: 61 DGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKI 120
Query: 480 KSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIA 539
D GYD VGE G+KLSGG++QR+AIAR ILKN PILLLDEATSALD+ E
Sbjct: 121 MRFPD-----GYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTERE 175
Query: 540 IQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRH 599
IQ +L ++ KG+T I IAHRLSTI D++IVL +G + E G+H +LL K GLY+ +W+
Sbjct: 176 IQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAKGGLYAEMWKA 235
Query: 600 Q 600
Q
Sbjct: 236 Q 236
>gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a
mitochondrial protein MTABC3 and related proteins.
MTABC3 (also known as ABCB6) is a mitochondrial
ATP-binding cassette protein involved in iron
homeostasis and one of four ABC transporters expressed
in the mitochondrial inner membrane, the other three
being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast
MDL1 (multidrug resistance-like protein 1) and MDL2
(multidrug resistance-like protein 2) transporters are
also included in this CD. MDL1 is an ATP-dependent
permease that acts as a high-copy suppressor of ATM1 and
is thought to have a role in resistance to oxidative
stress. Interestingly, subfamily B is more closely
related to the carboxyl-terminal component of subfamily
C than the two halves of ABCC molecules are with one
another.
Length = 238
Score = 322 bits (828), Expect = e-107
Identities = 128/243 (52%), Positives = 168/243 (69%), Gaps = 7/243 (2%)
Query: 360 IFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
I FKNVSF Y + I+ LSLTI PG+ + LVG SG GKST+ +LL RFYD GEI
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI 477
L+DG +I +++ LR QIG+V+Q+ L +I +NI YG+PDA++ E+ AAK A
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
FI SL D GYD VGE G +LSGGQ+QRIAIAR +L+N ILLLDEATSALD+E+E
Sbjct: 121 FIMSLPD-----GYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESE 175
Query: 538 IAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLW 597
+Q++L MKG+T I IAHRLSTI D + VL NG V E+G+H +L+ + G+Y++L
Sbjct: 176 KLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQKGVYAKLV 235
Query: 598 RHQ 600
+ Q
Sbjct: 236 KAQ 238
>gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial
lipid flippase and related proteins, subfamily C. MsbA
is an essential ABC transporter, closely related to
eukaryotic MDR proteins. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 234
Score = 320 bits (822), Expect = e-106
Identities = 120/239 (50%), Positives = 166/239 (69%), Gaps = 6/239 (2%)
Query: 360 IFFKNVSFSYDQKH-LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+ FKNV+F Y ++ ++SL I GE + LVG SG+GKST+ NL+ RFYD+ G IL
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRIL 60
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
IDG ++ + + SLR QIG+V+QD L + ++ +NI YGRP A+ E+ AA+ A A F
Sbjct: 61 IDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEF 120
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I L + GYD +GE G+KLSGGQRQRIAIAR +LK+ PIL+LDEATSALD+E+E
Sbjct: 121 IMELPE-----GYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESER 175
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLW 597
+Q +L LMK +T IAHRLSTI DR++VL++G + E G+H +LL + G+Y++L
Sbjct: 176 LVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQGGVYAKLH 234
>gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein.
This protein is related to a Proteobacterial ATP
transporter that exports lipid A and to eukaryotic
P-glycoproteins.
Length = 576
Score = 305 bits (784), Expect = 2e-96
Identities = 170/471 (36%), Positives = 252/471 (53%), Gaps = 50/471 (10%)
Query: 148 SIAIRDIFVIIGD-ILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLN 206
S+A+R+ + IG I++FIT +T L V + P V+ I + +L+
Sbjct: 137 SMALRNALMCIGGLIMMFITSPKLTSL-------VLLAVPLVL---LPILLFGRRVRKLS 186
Query: 207 KTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARF------AMIDFLKKIYQQ 260
+ ++ + G A I TV+ F H E +RF A ++I +
Sbjct: 187 RESQDRIADAGSYAGETLGA---IRTVQAFGHEDAER--SRFGGAVEKAYEAARQRIRTR 241
Query: 261 MRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGI-GAVAAATAMSLRLNGISHWVMW 319
L + ++L+ G LW I G ++A T + V
Sbjct: 242 ALLTAI--------VIVLVFG--AIVGVLWVGAHDVIAGKMSAGTLGQFVFYAV--MVAG 289
Query: 320 EIAALFESIGTIQD---GMNMLSKKYKIVDNYNAKRLVVT-----NGKIFFKNVSFSYDQ 371
I L E G +Q L + + + A T G+I F+ V+F+Y
Sbjct: 290 SIGTLSEVWGELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPA 349
Query: 372 K--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ 429
+ ++ L+LT++PGE + LVG SGAGKST+ LLLRFYD + G IL+DG ++ +
Sbjct: 350 RPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP 409
Query: 430 ESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
LR ++ +V QD L S+ +NI YGRPDA++ E+ AA+ A A FI +L +
Sbjct: 410 AELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPE----- 464
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
GYD ++GE G+ LSGGQRQRIAIAR ILK+APILLLDEATSALD+E+E +Q++L LMK
Sbjct: 465 GYDTYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMK 524
Query: 550 GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
G+T + IAHRL+T+ DR++V+D G + +G+H +L+ K GLY+RL R Q
Sbjct: 525 GRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIAKGGLYARLARLQ 575
>gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of
glucan transporter and related proteins, subfamily C.
Glucan exporter ATP-binding protein. In A. tumefaciens
cyclic beta-1, 2-glucan must be transported into the
periplasmic space to exert its action as a virulence
factor. This subfamily belongs to the MRP-like family
and is involved in drug, peptide, and lipid export. The
MRP-like family, similar to all ABC proteins, have a
common four-domain core structure constituted by two
membrane-spanning domains each composed of six
transmembrane (TM) helices and two nucleotide-binding
domains (NBD). ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 229
Score = 293 bits (753), Expect = 2e-96
Identities = 119/234 (50%), Positives = 170/234 (72%), Gaps = 5/234 (2%)
Query: 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
G+I F+NV+FSYD+K ++ +++ +I+PGE + +VG +GAGK+T+ NLL+RFYD + G+I
Sbjct: 1 GEIEFENVNFSYDEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI 477
LIDG +I ++S++SLR IG+V QDT L +I +NI GRP+A++ E+ AAK A A
Sbjct: 61 LIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHD 120
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
FI L GYD +GE+G LS G+RQ +AIAR +L++ IL+LDEATS +D+E E
Sbjct: 121 FIMKLP-----NGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETE 175
Query: 538 IAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNG 591
IQ++L LMKG+T I IAHRLSTI D+++VLD+G + EEG+H +LL K G
Sbjct: 176 KLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAKKG 229
>gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster
assembly, permease and ATPase components
[Posttranslational modification, protein turnover,
chaperones].
Length = 497
Score = 302 bits (775), Expect = 6e-96
Identities = 174/463 (37%), Positives = 251/463 (54%), Gaps = 40/463 (8%)
Query: 158 IGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIY-TLIYFIPRLNKTAESQATAR 216
I IL +I I+ L I V + + W + T+I ++ ++ + R
Sbjct: 52 IETILRWILFNILPTLVEISLVAVILWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFR 111
Query: 217 SLMTGRITDAYA-------NIMTVKLFSHAGREANYARFAMIDFLK---KIYQQMRLISS 266
LM +DA A N TVK F + EA A+ + K K++ + +++
Sbjct: 112 RLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNF 171
Query: 267 FE--IINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLR----LNGISHWVMWE 320
+ I + L +++ + G +G L +G + A+ + LN +
Sbjct: 172 GQTAIFSTGLRVMMTMSALGVE-----EGQLTVGDLVNVNALLFQLSIPLNFLG------ 220
Query: 321 IAALFESIGTIQDGMNMLSK----KYKIVDNYNAKRLV-VTNGKIFFKNVSFSYDQKHLI 375
+ I M + + ++ D +A L V G + F NVSF+YD + I
Sbjct: 221 --FSYREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPI 278
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+N +S TI G+ + +VG SGAGKSTI LL RFYD+ G I IDGQ+I +V+Q+SLR
Sbjct: 279 LNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRA 338
Query: 436 IGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV 495
IG+V QDT L + +I NI YGRPDA+ E+ AA+ A+ FI+SL + GYD V
Sbjct: 339 IGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPE-----GYDTGV 393
Query: 496 GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIA 555
GE G+KLSGG++QR+AIAR ILKN PIL+LDEATSALD+ E AIQ +L + G+T +
Sbjct: 394 GERGLKLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLV 453
Query: 556 IAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598
IAHRLSTI D +IVLDNG + E G+H +LL GLY+ +WR
Sbjct: 454 IAHRLSTIIDADEIIVLDNGRIVERGTHEELLAAGGLYAEMWR 496
>gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter;
Provisional.
Length = 588
Score = 303 bits (779), Expect = 2e-95
Identities = 157/409 (38%), Positives = 227/409 (55%), Gaps = 28/409 (6%)
Query: 205 LNKTAESQATAR---SLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQM 261
+ KT + QA + ++DA N+ V+ ++ E R + L QM
Sbjct: 177 MRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAA---QM 233
Query: 262 RLISSFEIINHL------LAMLLILGTTGCALFLWTKGILGIGAVAA----ATAMSLRLN 311
++S + + + L + ML IL G L KG L +G V A AT + RL+
Sbjct: 234 PVLSWWALASVLNRAASTITMLAIL-VLG--AALVQKGQLRVGEVVAFVGFATLLIGRLD 290
Query: 312 GISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQ 371
+ + I +F + +++ + + D A L G + F +VSFSYD
Sbjct: 291 QVVAF----INQVFMAAPKLEEFFEVEDAVPDVRDPPGAIDLGRVKGAVEFDDVSFSYDN 346
Query: 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES 431
+ ++S +PG+ + +VG +GAGKST+ NLL R +D + G ILIDG +I V++ S
Sbjct: 347 SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRAS 406
Query: 432 LREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGY 491
LR I +V QD L +RSI DNI GRPDA++ E+ AA+ A+A FI+ D GY
Sbjct: 407 LRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPD-----GY 461
Query: 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGK 551
D VGE G +LSGG+RQR+AIAR +LK+ PIL+LDEATSALD E E ++ +L LMKG+
Sbjct: 462 DTVVGERGRQLSGGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGR 521
Query: 552 TVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
T IAHRLST+ DR++V DNG V E GS +L+ + G ++ L R Q
Sbjct: 522 TTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVARGGRFAALLRAQ 570
>gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain
an N-terminal double-glycine peptidase domain [Defense
mechanisms].
Length = 709
Score = 300 bits (771), Expect = 6e-93
Identities = 182/598 (30%), Positives = 290/598 (48%), Gaps = 38/598 (6%)
Query: 18 KPPPYKLISFILKCIYGVRKY--ILLVIFFTTLTGTFEALLFAAMGKII--DLLSNIKPS 73
PP+ L FI + KY +L + +L AL +I+ +L + S
Sbjct: 136 DIPPFGLSWFI----PLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDASRS 191
Query: 74 LLWKNYSSYILLLGFIL--ISSTVFVGLQT-LFKHQVLSGNFPMLLRWNFHRLILNQSIN 130
L +L +G +L + + L+T L H L + L F R +L ++
Sbjct: 192 TLT------VLAIGLLLAALFEALLRLLRTYLIAH--LGKRLDLELSGRFFRHLLRLPLS 243
Query: 131 FFQEEFAGRIATKVMQTSIAIRDIF--VIIGDILVFITIYIVTILTIIGTFNVYMLFPFV 188
+F++ G I ++V + IR+ I+ L+ ++ + L ++ ++ + +
Sbjct: 244 YFEKRSVGEIISRVRELE-QIREFLTGSILT--LIIDLLFALIFLAVMFLYSWKLTLIVL 300
Query: 189 IWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARF 248
I + + F P L + + + + I TVK + R +
Sbjct: 301 AAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDN 360
Query: 249 AMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSL 308
+ + ++ +L I LL L + L +G L +G + A ++
Sbjct: 361 RLAKQVNIGFKTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAG 420
Query: 309 RLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTN----GKIFFKN 364
+ ++ L+ + + L + ++ G+I F+N
Sbjct: 421 YFISP----ITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKTLIHLPKLQGEIEFEN 476
Query: 365 VSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423
VSF Y ++ +LSL I PGEK+ +VGRSG+GKST+ LLL Y + G IL+DG +
Sbjct: 477 VSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVD 536
Query: 424 ISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLT 483
++++ SLR Q+G V QD L SIR+NI G P+A++ E+ AA+ A A FI++L
Sbjct: 537 LNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLP 596
Query: 484 DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS 543
GYD VGE G LSGGQRQR+A+AR +L ILLLDEATSALD E E I ++
Sbjct: 597 -----MGYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQN 651
Query: 544 LYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQN 601
L +++G+TVI IAHRLSTI + DR+IVLD G + E+GSH +LL + GLY+RL++ Q
Sbjct: 652 LLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELLAQGGLYARLYQQQE 709
>gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein
MsbA. This family consists of a single polypeptide
chain transporter in the ATP-binding cassette (ABC)
transporter family, MsbA, which exports lipid A. It may
also act in multidrug resistance. Lipid A, a part of
lipopolysaccharide, is found in the outer leaflet of the
outer membrane of most Gram-negative bacteria. Members
of this family are restricted to the Proteobacteria
(although lipid A is more broadly distributed) and often
are clustered with lipid A biosynthesis genes [Cell
envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides, Transport and
binding proteins, Other].
Length = 571
Score = 274 bits (702), Expect = 2e-84
Identities = 177/580 (30%), Positives = 287/580 (49%), Gaps = 63/580 (10%)
Query: 54 ALLFAAMGKIIDLLSNIKPSL---LWKNYSSYILLLGFILISSTVFVGLQTLFKHQVL-- 108
+L AA L + +KP L S + + ++I V G+ + +L
Sbjct: 23 MILVAATEST--LAALLKPLLDDGFGGRDRSVLWWVPLVVIGLAVLRGICSFVSTYLLSW 80
Query: 109 -SGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKV-----MQTSIAIRDIFVIIGDIL 162
S +R +L ++FF + G + +++ S A V++ + L
Sbjct: 81 VSNKVVRDIRVRMFEKLLGLPVSFFDRQPTGTLLSRITFDSEQVASAATDAFIVLVRETL 140
Query: 163 VFITIYIVTI-----LTIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARS 217
I ++IV + LT+I V ++ P + + + RL + ++ +
Sbjct: 141 TVIGLFIVLLYYSWQLTLI----VVVMLPVLSILMRRVSK------RLRRISKEIQNSMG 190
Query: 218 LMTGRITDAYANIMTVKLFSHAGREANYARFA-----MIDFLKKIYQQMRLISSFE--II 270
+T + VKLF G+ RF K+ + S I
Sbjct: 191 QVTTVAEETLQGYRVVKLF--GGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLIA 248
Query: 271 NHLLAMLLILGTTGCALFLWTKGILGIGAVAA-ATAMSLRLNGISHWVMWEIAALFESIG 329
+ LA++L + ALF G L G A TAM ++ + +L
Sbjct: 249 SLALAVVLFI-----ALFQAQAGSLTAGDFTAFITAMIA--------LIRPLKSLTNVNA 295
Query: 330 TIQDGMNMLSKKYKIVD-----NYNAKRLVVTNGKIFFKNVSFSY-DQKHLIINNLSLTI 383
+Q G+ + ++D + + + G + F+NV+F Y + ++++SL I
Sbjct: 296 PMQRGLAAAESLFTLLDSPPEKDTGTRAIERARGDVEFRNVTFRYPGRDRPALDSISLVI 355
Query: 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDT 443
+PGE + LVGRSG+GKST+ NL+ RFY+ G+IL+DG ++++ + SLR Q+ +V+QD
Sbjct: 356 EPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDV 415
Query: 444 SLLHRSIRDNILYGRP-DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKL 502
L + +I +NI YGR A E+ A A A F+ L G D +GE+G+ L
Sbjct: 416 VLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPL-----GLDTPIGENGVLL 470
Query: 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLST 562
SGGQRQR+AIAR +LK+APIL+LDEATSALD+E+E +Q +L LM+G+T + IAHRLST
Sbjct: 471 SGGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLST 530
Query: 563 ISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQNK 602
I DR++V+D+G + E G+H +LL +NGLY++L Q +
Sbjct: 531 IEKADRIVVMDDGRIVERGTHNELLARNGLYAQLHNMQFR 570
>gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein;
Provisional.
Length = 582
Score = 273 bits (699), Expect = 8e-84
Identities = 116/246 (47%), Positives = 169/246 (68%), Gaps = 7/246 (2%)
Query: 357 NGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
G I F+NV+F+Y K + N++ I G+ + LVGRSG+GKSTI NLL RFYDI G
Sbjct: 339 KGDIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEG 398
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDA-SECELFNAAKCAE 474
EIL+DG ++ + + SLR Q+ +V+Q+ L + +I +NI Y R + S ++ AA+ A
Sbjct: 399 EILLDGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAY 458
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
A FI + + G D +GE+G+ LSGGQRQRIAIAR +L+++PIL+LDEATSALD+
Sbjct: 459 AMDFINKMDN-----GLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDT 513
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYS 594
E+E AIQ +L L K +T + IAHRLSTI D ++V+++G + E G+H +LL +NG+Y+
Sbjct: 514 ESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLAQNGVYA 573
Query: 595 RLWRHQ 600
+L + Q
Sbjct: 574 QLHKMQ 579
>gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC
transporter, HlyB family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 694
Score = 275 bits (706), Expect = 1e-83
Identities = 190/590 (32%), Positives = 281/590 (47%), Gaps = 69/590 (11%)
Query: 39 ILLVIFFTTLTGTFEALLFAAMGKIID--LLSNIKPSLLWKNYSSYILLLGFILISST-- 94
+LL+ L LLF +ID L+ +L +L L + ++
Sbjct: 144 VLLISLALQLFALVTPLLFQV---VIDKVLVHRGLSTL-------SVLALAMLAVAIFEP 193
Query: 95 VFVGLQT-LFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRD 153
GL+T LF H L+ + L +R +L + +F+ G +V + IR+
Sbjct: 194 ALGGLRTYLFAH--LTSRIDVELGARLYRHLLGLPLGYFESRRVGDTVARVRELE-QIRN 250
Query: 154 IFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFI--PRLNKTAES 211
F+ + V + + V + + F L VI S Y L+ P L K E
Sbjct: 251 -FLTGSALTVVLDLLFVVVFLAVMFFYSPTLTGVVI-GSLVCYALLSVFVGPILRKRVED 308
Query: 212 QATARSLMTGRITDAYANIMTVK---LFSHAGR--EANYARFAMIDF----LKKIYQQMR 262
+ + T + ++ I T+K + A + F L I Q
Sbjct: 309 KFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQ-- 366
Query: 263 LISSFEIINHL-LAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNG--ISHWVMW 319
+ E+I L A+LL G L G L G + A ++ R+ + +W
Sbjct: 367 ---AIELIQKLTFAILLWFGAH-----LVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLW 418
Query: 320 E------IAALFESIGTIQDGMNMLSKKYKIVDNYNAKR--LVVTNGKIFFKNVSFSYDQ 371
+ IA E +G I + + +A L G I F+N+ F Y
Sbjct: 419 QDFQQTGIA--LERLGDILN---------SPTEPRSAGLAALPELRGAITFENIRFRYAP 467
Query: 372 KH-LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430
+++NL+L I+PGE IG+VG SG+GKST+ LL R Y ++G++L+DG +++
Sbjct: 468 DSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPA 527
Query: 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
LR Q+G+V Q+ L RSIRDNI P A + +AAK A A FI L +G
Sbjct: 528 WLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISEL-----PQG 582
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKG 550
Y+ VGE G LSGGQRQRIAIAR ++ N IL+ DEATSALD E+E I +++ + +G
Sbjct: 583 YNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRG 642
Query: 551 KTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
+TVI IAHRLST+ A DR+IVL+ G +AE G H +LL GLY+RLW+ Q
Sbjct: 643 RTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQGLYARLWQQQ 692
>gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin
B, subfamily C. The ABC-transporter hemolysin B is a
central component of the secretion machinery that
translocates the toxin, hemolysin A, in a
Sec-independent fashion across both membranes of E.
coli. The hemolysin A (HlyA) transport machinery is
composed of the ATP-binding cassette (ABC) transporter
HlyB located in the inner membrane, hemolysin D (HlyD),
also anchored in the inner membrane, and TolC, which
resides in the outer membrane. HlyD apparently forms a
continuous channel that bridges the entire periplasm,
interacting with TolC and HlyB. This arrangement
prevents the appearance of periplasmic intermediates of
HlyA during substrate transport. Little is known about
the molecular details of HlyA transport, but it is
evident that ATP-hydrolysis by the ABC-transporter HlyB
is a necessary source of energy.
Length = 237
Score = 249 bits (637), Expect = 4e-79
Identities = 118/242 (48%), Positives = 164/242 (67%), Gaps = 6/242 (2%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I F++V F Y +I++N+SL I+PGE +G+VGRSG+GKST+ L+ RFY + G +L
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
+DG +++ LR Q+G+V Q+ L +RSIRDNI P S + AAK A A F
Sbjct: 61 VDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDF 120
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I L +GYD VGE G LSGGQRQRIAIAR ++ N IL+ DEATSALD E+E
Sbjct: 121 ISEL-----PEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEH 175
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598
AI ++++++ G+TVI IAHRLST+ DR+IV++ G + E+GSH +LL +NGLY+ L++
Sbjct: 176 AIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAENGLYAYLYQ 235
Query: 599 HQ 600
Q
Sbjct: 236 LQ 237
>gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug
resistance protein-like transporters. The MRP
(Multidrug Resistance Protein)-like transporters are
involved in drug, peptide, and lipid export. They belong
to the subfamily C of the ATP-binding cassette (ABC)
superfamily of transport proteins. The ABCC subfamily
contains transporters with a diverse functional spectrum
that includes ion transport, cell surface receptor, and
toxin secretion activities. The MRP-like family, similar
to all ABC proteins, have a common four-domain core
structure constituted by two membrane-spanning domains,
each composed of six transmembrane (TM) helices, and two
nucleotide-binding domains (NBD). ABC transporters are a
subset of nucleotide hydrolases that contain a signature
motif, Q-loop, and H-loop/switch region, in addition to,
the Walker A motif/P-loop and Walker B motif commonly
found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 171
Score = 244 bits (627), Expect = 3e-78
Identities = 102/215 (47%), Positives = 127/215 (59%), Gaps = 48/215 (22%)
Query: 362 FKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420
FKNVSFSY + ++ ++SLTI+PGEK+ +VG SG+GKST+ LLLR YD GEILID
Sbjct: 3 FKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILID 62
Query: 421 GQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
G ++ ++ ESLR+ I V QD L +IR+NI
Sbjct: 63 GVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI-------------------------- 96
Query: 481 SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAI 540
LSGGQRQRIAIAR +L++ PIL+LDEATSALD E E I
Sbjct: 97 ---------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALI 135
Query: 541 QKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
++L L KGKTVI IAHRLSTI DR+IVLD+G
Sbjct: 136 LEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDG 170
>gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein. This model
describes glucan exporter ATP binding protein in
bacteria. It belongs to the larger ABC transporter
superfamily with the characteristic ATP binding motif.
The In general, this protein is in some ways implicated
in osmoregulation and suggested to participate in the
export of glucan from the cytoplasm to periplasm. The
cyclic beta-1,2-glucan in the bactrerial periplasmic
space is suggested to confer the property of high
osmolority. It has also been demonstrated that mutants
in this loci have lost functions of virulence and
motility. It is unclear as to how virulence and
osmoadaptaion are related [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 585
Score = 242 bits (620), Expect = 3e-72
Identities = 149/451 (33%), Positives = 244/451 (54%), Gaps = 37/451 (8%)
Query: 165 ITIYIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSL---MTG 221
+ ++ L I F + V+ + +Y LI + + +T QA +
Sbjct: 138 LATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLV-MQRTKNGQAAVEHHYHNVFK 196
Query: 222 RITDAYANIMTVKLFSHAGREAN----------YARFAMIDFLKKIYQQMRLISSFEIIN 271
++D+ +N+ V ++ E + A++ ++D+ R+ S+ ++
Sbjct: 197 HVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMM- 255
Query: 272 HLLAMLLILGTTGCALFLWTKGILGIGAVAA----ATAMSLRLNGISHWVMWEIAALFES 327
+L++GT L KG L +G V A A + RL+ +S + I +FE+
Sbjct: 256 ----CILVIGT-----VLVIKGELSVGEVIAFIGFANLLIGRLDQMSGF----ITQIFEA 302
Query: 328 IGTIQDGMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGE 387
++D ++ ++ + +A L G + F++++F + + ++S + G+
Sbjct: 303 RAKLEDFFDLEDSVFQREEPADAPELPNVKGAVEFRHITFEFANSSQGVFDVSFEAKAGQ 362
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLH 447
+ +VG +GAGK+T+ NLL R YD G+ILIDG +I+ V++ESLR+ I V QD L +
Sbjct: 363 TVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFN 422
Query: 448 RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQR 507
RSIR+NI GR A++ E++ AAK A A FI + GYD VGE G +LSGG+R
Sbjct: 423 RSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRS-----NGYDTLVGERGNRLSGGER 477
Query: 508 QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMD 567
QR+AIAR ILKNAPIL+LDEATSALD E E ++ ++ L K +T IAHRLST+ D
Sbjct: 478 QRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNAD 537
Query: 568 RLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598
++ LD G + E+GS +L++K+G + +L R
Sbjct: 538 LVLFLDQGRLIEKGSFQELIQKDGRFYKLLR 568
>gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of
bacteriocin exporters, subfamily C. Many
non-lantibiotic bacteriocins of lactic acid bacteria are
produced as precursors which have N-terminal leader
peptides that share similarities in amino acid sequence
and contain a conserved processing site of two glycine
residues in positions -1 and -2. A dedicated ATP-binding
cassette (ABC) transporter is responsible for the
proteolytic cleavage of the leader peptides and
subsequent translocation of the bacteriocins across the
cytoplasmic membrane.
Length = 220
Score = 226 bits (578), Expect = 2e-70
Identities = 97/225 (43%), Positives = 142/225 (63%), Gaps = 6/225 (2%)
Query: 358 GKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
G+I F+NVSFSY +Q+ ++N+SLTI+ GEK+ ++GR G+GKST+ LL Y G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGS 60
Query: 417 ILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEAD 476
+L+DG +I + LR IG V QD +L + ++RDNI G P A + + AA+ A
Sbjct: 61 VLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVT 120
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
F ++H G D +GE G LSGGQRQ +A+AR +L + PILLLDE TSA+D +
Sbjct: 121 DF----VNKHP-NGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNS 175
Query: 537 EIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581
E +++ L L+ KT+I I HR S + +DR+IV+D+G + +G
Sbjct: 176 EERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
>gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd
biosynthesis, ATPase and permease components [Energy
production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 559
Score = 236 bits (603), Expect = 5e-70
Identities = 106/244 (43%), Positives = 151/244 (61%), Gaps = 6/244 (2%)
Query: 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
+I +N+SF Y +++L+LTI+ G+ LVG SGAGKST+ NLLL F GE
Sbjct: 318 PIEISLENLSFRYPDGKPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGE 377
Query: 417 ILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEAD 476
I ++G ++ ++S E+ R+QI V+Q+ L +IR+NIL RPDAS+ E+ A A
Sbjct: 378 IRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLL 437
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
F+ G D +GE G LSGGQ QR+A+AR +L A +LLLDE T+ LD+E
Sbjct: 438 EFVP------KPDGLDTVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAET 491
Query: 537 EIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596
E I ++L L K KTV+ I HRL + DR++VLDNG + E+G+H +L +K GLY+ L
Sbjct: 492 EQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEKQGLYANL 551
Query: 597 WRHQ 600
+ Q
Sbjct: 552 LKQQ 555
>gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter
Associated with Antigen Processing, subfamily C. TAP
(Transporter Associated with Antigen Processing) is
essential for peptide delivery from the cytosol into the
lumen of the endoplasmic reticulum (ER), where these
peptides are loaded on major histocompatibility complex
(MHC) I molecules. Loaded MHC I leave the ER and display
their antigenic cargo on the cell surface to cytotoxic T
cells. Subsequently, virus-infected or malignantly
transformed cells can be eliminated. TAP belongs to the
large family of ATP-binding cassette (ABC) transporters,
which translocate a vast variety of solutes across
membranes.
Length = 226
Score = 222 bits (568), Expect = 5e-69
Identities = 98/220 (44%), Positives = 145/220 (65%), Gaps = 7/220 (3%)
Query: 358 GKIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
G + F+NV+F+Y + L++ ++S T+ PGE LVG SG+GKST+ LL FY + G
Sbjct: 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
++L+DG+ IS + L ++ +V Q+ L RS++DNI YG S + AA+ A A
Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
FI L GYD VGE G +LSGGQ+QR+AIAR +++N +L+LDEATSALD+E
Sbjct: 130 HSFISELAS-----GYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAE 184
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
+E +Q++LY+ + +TV+ IAHRLST+ D+++VLD G
Sbjct: 185 SEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGG 224
>gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB
family. Type I protein secretion is a system in some
Gram-negative bacteria to export proteins (often
proteases) across both inner and outer membranes to the
extracellular medium. This is one of three proteins of
the type I secretion apparatus. Targeted proteins are
not cleaved at the N-terminus, but rather carry signals
located toward the extreme C-terminus to direct type I
secretion. This model is related to models TIGR01842 and
TIGR01846, and to bacteriocin ABC transporters that
cleave their substrates during export [Protein fate,
Protein and peptide secretion and trafficking, Cellular
processes, Pathogenesis].
Length = 694
Score = 235 bits (601), Expect = 1e-68
Identities = 134/442 (30%), Positives = 223/442 (50%), Gaps = 54/442 (12%)
Query: 183 MLFPFVIWI----------SAYIYTLIYFI---PRLNKTAESQATARSLMTGRITDAYAN 229
+LF VI I A L+ + L++ AE + + ++ +
Sbjct: 274 LLFLLVIAIIGGPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSG 333
Query: 230 IMTVKLFSHAGR-EANYARFAMIDFLKKIYQQMRLISSFEI-----INHLL-AMLLILGT 282
+ T+K + GR + + + + L + + R +S+ I L+ ++++G
Sbjct: 334 LETIKALNAEGRFQRRWEQ--TVAALARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGV 391
Query: 283 TGCALFLWTKGILGIGAVAAATAMSLR----LNGISHWVM-WEIAAL-FESIGTIQDGMN 336
+L + G L +G + A +S R L ++ + ++ A +S+ + M
Sbjct: 392 -----YLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDEL---MQ 443
Query: 337 MLSKKYKIVDNYNAKRLV---VTNGKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLV 392
+ V+ R + G+I F+NVSF+Y Q+ ++N+SLTI+PGEK+ ++
Sbjct: 444 LP------VERPEGTRFLHRPRLQGEIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAII 497
Query: 393 GRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRD 452
GR G+GKST+ LLL Y G +L+DG +I + LR IG V QD L + ++RD
Sbjct: 498 GRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRD 557
Query: 453 NILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512
NI G P A + E+ AA+ A F++ H G D +GE G LSGGQRQ +A+
Sbjct: 558 NIALGAPYADDEEILRAAELAGVTEFVRR----HP-DGLDMQIGERGRSLSGGQRQAVAL 612
Query: 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572
AR +L++ PILLLDE TSA+D+ +E + L + GKT++ + HR S + +DR+IV+
Sbjct: 613 ARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVM 672
Query: 573 DNGCVAEEGSH---LDLLKKNG 591
DNG + +G L+ L+K
Sbjct: 673 DNGRIVADGPKDQVLEALRKGR 694
>gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd
biosynthesis, fused ATPase and permease components
[Energy production and conversion / Posttranslational
modification, protein turnover, chaperones].
Length = 573
Score = 230 bits (589), Expect = 7e-68
Identities = 136/476 (28%), Positives = 223/476 (46%), Gaps = 53/476 (11%)
Query: 154 IFVIIGDILVFITIYIVTILTIIGTFNVYML---------FPFVIWISAYIYTLIYFIPR 204
+ ++ D+ +Y+ I + + + P + + + L+ IP
Sbjct: 118 LNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLLLLIIP- 176
Query: 205 LNKTAESQATARSLMTGRITDAYANIMTVKLFSH-------------AGRE----ANYAR 247
GR A+ L S G E
Sbjct: 177 ----------TLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEA 226
Query: 248 FAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMS 307
+LK +Q R + I L+A LL++G L LW +G GA+A A
Sbjct: 227 -TEASWLKAQRKQARFTGLSDAILLLIAGLLVIG-----LLLWMAAQVGAGALAQPGAAL 280
Query: 308 LRLNGISHWVMWEI--AALFESIGTIQDGMNMLSK--KYKIVDNYNAKRLVVTNGKIFFK 363
L + +E F+ +G + L+ K + ++ T + +
Sbjct: 281 ALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPDEQTATTGQALELR 340
Query: 364 NVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
NVSF+Y Q+ + N +LT+ GEK+ ++GRSG+GKST+ LL +D + G I ++G
Sbjct: 341 NVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGV 400
Query: 423 NISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSL 482
I+++ +++LRE I ++TQ L ++RDN+ PDAS+ EL+ A + + ++S
Sbjct: 401 EIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESA 460
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
D G + +GE G +LSGG+R+R+A+AR +L +AP+ LLDE T LD E +
Sbjct: 461 PD-----GLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLA 515
Query: 543 SLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598
L+ +GKT++ + HRL + MDR+IVLDNG + EEG+H +LL NG Y RL++
Sbjct: 516 LLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLANNGRYKRLYQ 571
>gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein.
[Transport and binding proteins, Other].
Length = 711
Score = 233 bits (595), Expect = 1e-67
Identities = 167/587 (28%), Positives = 278/587 (47%), Gaps = 64/587 (10%)
Query: 37 KYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIK--PSLLWKNYSSYILLLGFILISST 94
+++ F TL+ E + G++ID L K P+L +S I + + I+S+
Sbjct: 161 PWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGPPAL-----ASAIFFMCLLSIASS 215
Query: 95 VFVGLQTLFKHQVLSGNFPML-------LRWNFHRLILNQSINFFQEEFAGRIA------ 141
V GL G+F +R + R +L Q + FF E G +
Sbjct: 216 VSAGL--------RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDENKTGELTSRLSSD 267
Query: 142 TKVMQTSIAIR-DIFV---IIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYT 197
T+ M S+++ ++ + ++ L+ +++ LT++ N+ P V
Sbjct: 268 TQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINL----PLVFLAEKV--- 320
Query: 198 LIYFIPRLNKTAE--SQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLK 255
F R +E +A A++ +A + + TV+ F+ EA+ + A+ +
Sbjct: 321 ---FGKRYQLLSEELQEAVAKANQVAE--EALSGMRTVRSFAAEEGEASRFKEALEE-TL 374
Query: 256 KIYQQMRLISSFEI-INHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGIS 314
++ ++ L + + +L ML+ + L G + G + + +L G +
Sbjct: 375 QLNKRKALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQL-GEA 433
Query: 315 HWVMWEI-AALFESIGTIQDGMNMLSKKYKIVDN--YNAKRLVVTNGKIFFKNVSFSYDQ 371
V+ + + + +++G + L +K I L G I F++VSFSY
Sbjct: 434 VRVLSYVYSGMMQAVGASEKVFEYLDRKPNIPLTGTLAPLNL---EGLIEFQDVSFSYPN 490
Query: 372 K--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ 429
+ ++ L+ T+ PGE + LVG SG+GKST+ LL Y G++L+DG +
Sbjct: 491 RPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH 550
Query: 430 ESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
L Q+ +V Q+ L S+R+NI YG D + E+ AAK A A FI
Sbjct: 551 HYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFP-----N 605
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
GYD VGE G +LSGGQ+QRIAIAR +++ +L+LDEATSALD+E E +Q+S
Sbjct: 606 GYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQES--RSRA 663
Query: 550 GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596
+TV+ IAHRLST+ D+++VL G V E G+H L++ G Y L
Sbjct: 664 SRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLMEDQGCYKHL 710
>gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 574
Score = 227 bits (582), Expect = 9e-67
Identities = 101/249 (40%), Positives = 154/249 (61%), Gaps = 7/249 (2%)
Query: 353 LVVTNGKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD 411
+ NVSF+Y DQ ++ LSL I+ GEK+ L+GR+G GKST+ LL R +D
Sbjct: 332 AAADQVSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD 391
Query: 412 IKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAK 471
+ GEIL++GQ I++ S+ +LR+ I +V+Q L ++RDN+L P+AS+ L +
Sbjct: 392 PQQGEILLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQ 451
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
+ K L D+ KG +A +GE G +LSGG+++R+ IAR +L +AP+LLLDE T
Sbjct: 452 QVGLE---KLLEDD---KGLNAWLGEGGRQLSGGEQRRLGIARALLHDAPLLLLDEPTEG 505
Query: 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNG 591
LD+E E I + L + KTV+ I HRL+ + DR+ V+DNG + E+G+H +LL + G
Sbjct: 506 LDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTHQELLAQQG 565
Query: 592 LYSRLWRHQ 600
Y +L +
Sbjct: 566 RYYQLKQRL 574
>gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of
multidrug resistance-associated protein. The ABC
subfamily C is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resistance lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 221
Score = 210 bits (538), Expect = 1e-64
Identities = 95/227 (41%), Positives = 136/227 (59%), Gaps = 9/227 (3%)
Query: 358 GKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
G I FKNVS Y ++ N+S +I+PGEK+G+VGR+G+GKS++ L R ++ G
Sbjct: 1 GDIEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGS 60
Query: 417 ILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI-LYGRPDASECELFNAAKCAEA 475
ILIDG +IS + LR +I ++ QD L +IR N+ +G S+ EL+ A +
Sbjct: 61 ILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGE--YSDEELWQALERVGL 118
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
F++SL G D V E G LS GQRQ + +AR +L+ + IL+LDEAT+++D E
Sbjct: 119 KEFVESLPG-----GLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPE 173
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582
+ IQK++ K TV+ IAHRL TI DR++VLD G V E S
Sbjct: 174 TDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
>gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex. Unfortunately, the gene symbol
nomenclature adopted based on this operon in B. subtilis
assigns cydC to the third gene in the operon where this
gene is actually homologous to the E. coli cydD gene. We
have chosen to name all homologs in this family in
accordance with the precedence of publication of the E.
coli name, CydD.
Length = 529
Score = 210 bits (536), Expect = 9e-61
Identities = 89/213 (41%), Positives = 132/213 (61%), Gaps = 5/213 (2%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ F VS +Y + + +S T+ PGE++ LVG SGAGKST+ NLLL F D G I +
Sbjct: 322 LEFSGVSVAYPGRRPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAV 381
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFI 479
+G +++ +S R+QI V Q L +I +NI RPDAS+ E+ A + A D F+
Sbjct: 382 NGVPLADADADSWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFV 441
Query: 480 KSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIA 539
+L +G D +GE G LSGGQ QR+A+AR L++AP+LLLDE T+ LD+E E
Sbjct: 442 AAL-----PQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAE 496
Query: 540 IQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572
+ ++L L +G+TV+ + HRL+ + DR++VL
Sbjct: 497 VLEALRALAQGRTVLLVTHRLALAALADRIVVL 529
>gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC
transporter, peptidase/ATP-binding protein. This
protein describes a multidomain ABC transporter subunit
that is one of three protein families associated with
some regularity with a distinctive family of putative
bacteriocins. It includes a bacteriocin-processing
peptidase domain at the N-terminus. Model TIGR03793
describes a conserved propeptide region for this
bacteriocin family, unusual because it shows obvious
homology a region of the enzyme nitrile hydratase up to
the classic Gly-Gly cleavage motif. This family is
therefore predicted to be a subunit of a bacteriocin
processing and export system characteristic to this
system that we designate NHLM, Nitrile Hydratase Leader
Microcin [Transport and binding proteins, Amino acids,
peptides and amines, Cellular processes, Biosynthesis of
natural products].
Length = 710
Score = 211 bits (540), Expect = 7e-60
Identities = 153/505 (30%), Positives = 234/505 (46%), Gaps = 61/505 (12%)
Query: 124 ILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDIL--VFITIYIVTILTIIGTFNV 181
IL + FF + AG IA++V Q + + + + G + + +V ++ ++
Sbjct: 237 ILRLPVRFFAQRHAGDIASRV-QLNDQVAE--FLSGQLATTALDAVMLVFYALLMLLYDP 293
Query: 182 YMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLM--TGRITD-AYANIMTVKLFSH 238
+ I +A + + R A R L G++T A + + +++
Sbjct: 294 VLTL-IGIAFAAINVLALQLVSRRRVDA-----NRRLQQDAGKLTGVAISGLQSIETLKA 347
Query: 239 AGREANY-ARFAMIDFLKKIYQQMRLISSFEIINHL------LAMLLILGTTGCALFLWT 291
+G E+++ +R+A K + Q L +I+ L L LIL G
Sbjct: 348 SGLESDFFSRWAGY-QAKLLNAQQELGVLTQILGVLPTLLTSLNSALILVVGG---LRVM 403
Query: 292 KGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQD---GMNMLS--------- 339
+G L IG + A ++ + L GT+Q+ +N L
Sbjct: 404 EGQLTIGMLVAFQSLMSSFLE-------PVNNLVGFGGTLQELEGDLNRLDDVLRNPVDP 456
Query: 340 --KKYKIVDNY--NAKRLVVTNGKIFFKNVSFSY--DQKHLIINNLSLTIQPGEKIGLVG 393
++ + + RL G + +N++F Y + LI N SLT+QPG+++ LVG
Sbjct: 457 LLEEEEAPAAGSEPSPRLS---GYVELRNITFGYSPLEPPLI-ENFSLTLQPGQRVALVG 512
Query: 394 RSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDN 453
SG+GKSTI L+ Y GEIL DG + +E L + MV QD L ++RDN
Sbjct: 513 GSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDN 572
Query: 454 ILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIA 513
+ P + +L A K A I S GYDA + E G LSGGQRQR+ IA
Sbjct: 573 LTLWDPTIPDADLVRACKDAAIHDVITSRPG-----GYDAELAEGGANLSGGQRQRLEIA 627
Query: 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLD 573
R +++N IL+LDEATSALD E E I +L +G T I +AHRLSTI D +IVL+
Sbjct: 628 RALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLE 685
Query: 574 NGCVAEEGSHLDLLKKNGLYSRLWR 598
G V + G+H +L G Y+RL R
Sbjct: 686 RGKVVQRGTHEELWAVGGAYARLIR 710
>gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter
membrane/ATP-binding component; Reviewed.
Length = 588
Score = 200 bits (511), Expect = 1e-56
Identities = 80/236 (33%), Positives = 136/236 (57%), Gaps = 9/236 (3%)
Query: 367 FSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY-GEILIDGQNIS 425
S D K L L+ T+ G++I LVG SGAGK+++ N LL F + Y G + I+G +
Sbjct: 358 LSPDGKTLA-GPLNFTLPAGQRIALVGPSGAGKTSLLNALLGF--LPYQGSLKINGIELR 414
Query: 426 NVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDE 485
+ ES R+ + V Q+ L H ++RDN+L G PDAS+ +L A + A F+ L
Sbjct: 415 ELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQ- 473
Query: 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
G D +G+ LS GQ QR+A+AR +L+ +LLLDE T++LD+ +E + ++L
Sbjct: 474 ----GLDTPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALN 529
Query: 546 NLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQN 601
+ +T + + H+L ++ D++ V+ +G + ++G + +L + GL++ L H+
Sbjct: 530 AASRRQTTLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAELSQAGGLFATLLAHRQ 585
>gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter. This
model describes ABC-type bacteriocin transporter. The
amino terminal domain (pfam03412) processes the
N-terminal leader peptide from the bacteriocin while
C-terminal domains resemble ABC transporter membrane
protein and ATP-binding cassette domain. In general,
bacteriocins are agents which are responsible for
killing or inhibiting the closely related species or
even different strains of the same species. Bacteriocins
are usually encoded by bacterial plasmids. Bacteriocins
are named after the species and hence in literature one
encounters various names e.g., leucocin from Leuconostic
geldium; pedicocin from Pedicoccus acidilactici; sakacin
from Lactobacillus sake etc [Protein fate, Protein and
peptide secretion and trafficking, Protein fate, Protein
modification and repair, Transport and binding proteins,
Other].
Length = 708
Score = 202 bits (515), Expect = 2e-56
Identities = 139/491 (28%), Positives = 248/491 (50%), Gaps = 26/491 (5%)
Query: 119 NFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGT 178
++ + + ++FF G I ++ S I + I + + + I +V + +
Sbjct: 234 SYIKHLFELPMSFFSTRRTGEIVSRFTDASSIIDALASTILSLFLDMWI-LVIVGLFLVR 292
Query: 179 FNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSH 238
N+ + ++ I Y +I F NK A +++ I + I T+K S
Sbjct: 293 QNMLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIK--SL 350
Query: 239 AGREANYARF--AMIDFLKK--IYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGI 294
Y++ D+L K YQ+ + I + ++L + +L +G
Sbjct: 351 TSEAERYSKIDSEFGDYLNKSFKYQKADQGQ--QAIKAVTKLILNVVILWTGAYLVMRGK 408
Query: 295 LGIGAVAAATAM-SLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKR- 352
L +G + A+ S L + + I L + + N L++ Y + + K+
Sbjct: 409 LTLGQLITFNALLSYFLTPLEN-----IINLQPKLQAARVANNRLNEVYLVDSEFINKKK 463
Query: 353 ---LVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
L NG I +VS+SY I++++SLTI+ K +VG SG+GKST+ LL+ F
Sbjct: 464 RTELNNLNGDIVINDVSYSYGYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGF 523
Query: 410 YDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG-RPDASECELFN 468
+ + GEIL++G ++ ++ + +LR+ I + Q+ + SI +N+L G + + S+ E++
Sbjct: 524 FQARSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWA 583
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
A + AE I+++ GY + E G +SGGQ+QRIA+AR +L ++ +L+LDE+
Sbjct: 584 ACEIAEIKDDIENMP-----LGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDES 638
Query: 529 TSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLK 588
TS LD+ E I +L N ++ KT+I +AHRLS D++IVLD+G + E+GSH +LL
Sbjct: 639 TSNLDTITEKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD 697
Query: 589 KNGLYSRLWRH 599
+NG Y+ L +
Sbjct: 698 RNGFYASLIHN 708
>gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC
transporter, ATP-binding protein. Members of this
protein family are ABC transporter ATP-binding subunits,
part of a three-gene putative bacteriocin transport
operon. The other subunits include another ATP-binding
subunit (TIGR03796), which has an N-terminal leader
sequence cleavage domain, and an HlyD homolog
(TIGR03794). In a number of genomes, members of protein
families related to nitrile hydratase alpha subunit or
to nif11 have undergone paralogous family expansions,
with members possessing a putative bacteriocin cleavage
region ending with a classic Gly-Gly motif. Those sets
of putative bacteriocins, members of this protein family
and its partners TIGR03794 and TIGR03796, and
cyclodehydratase/docking scaffold fusion proteins of
thiazole/oxazole biosynthesis frequently show correlated
species distribution and co-clustering within many of
those genomes [Transport and binding proteins, Amino
acids, peptides and amines, Cellular processes,
Biosynthesis of natural products].
Length = 686
Score = 192 bits (490), Expect = 5e-53
Identities = 168/628 (26%), Positives = 285/628 (45%), Gaps = 95/628 (15%)
Query: 11 PFPNILIKPPPYKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNI 70
P P+ + L+ F L+ G R+ +L ++ L L+ A G +I
Sbjct: 115 PLPDKALGL--RDLLRFALR---GARRDLLAILAMGLLGTLLGMLVPIATGILIG---TA 166
Query: 71 KPSLLWKNYSSYILLLGFILISSTVFV-------GLQTLFKHQVLSGNFPMLLRWNFHRL 123
P S ++ + L+++ V L L + + + W+ RL
Sbjct: 167 IP----DADRSLLVQIALALLAAAVGAAAFQLAQSLAVLRLETRMDASLQAAV-WD--RL 219
Query: 124 ILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYM 183
L ++FF++ G +A++ M I I I+ + + I N+ +
Sbjct: 220 -LRLPVSFFRQYSTGDLASRAM----GISQIRRILSGSTL-----TTLLSGIFALLNLGL 269
Query: 184 LFPF-------VIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLF 236
+F + + ++ + + L E + ++G+I + +TV+L
Sbjct: 270 MFYYSWKLALVAVALALVAIAVTLVLGLLQVRKERRLLE---LSGKI-----SGLTVQLI 321
Query: 237 SH------AGREAN-YARFAMIDFLKKIYQQMRLISSFEIINHLL----AMLLILGTT-- 283
+ AG E +AR+A K +Q +L S + I +LL A+L +L +
Sbjct: 322 NGISKLRVAGAENRAFARWA-----KLFSRQRKLELSAQRIENLLTVFNAVLPVLTSAAL 376
Query: 284 -GCALFLWTKGILGIGA-VAAATAMSLRLNGISHWVM-----WEIAALFESIGTIQDGMN 336
A+ L L +G+ +A TA ++ + L+E I
Sbjct: 377 FAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPI----- 431
Query: 337 MLSKKYKIVDN-YNAKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGR 394
L ++ + + +L +G I V+F Y LI++++SL I+PGE + +VG
Sbjct: 432 -LEALPEVDEAKTDPGKL---SGAIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGP 487
Query: 395 SGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI 454
SG+GKST+ LLL F + G + DGQ+++ + +++R Q+G+V Q+ L+ SI +NI
Sbjct: 488 SGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENI 547
Query: 455 LYGRPDASECELFNAAKCA--EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512
G P + E + AA+ A DI G + E G LSGGQRQR+ I
Sbjct: 548 AGGAPLTLD-EAWEAARMAGLAEDI-------RAMPMGMHTVISEGGGTLSGGQRQRLLI 599
Query: 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572
AR +++ ILL DEATSALD+ + + +SL L T I IAHRLSTI DR+ VL
Sbjct: 600 ARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVL 657
Query: 573 DNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
D G V ++G++ +L+ + GL+++L R Q
Sbjct: 658 DAGRVVQQGTYDELMAREGLFAQLARRQ 685
>gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 592
Score = 186 bits (474), Expect = 2e-51
Identities = 93/246 (37%), Positives = 152/246 (61%), Gaps = 6/246 (2%)
Query: 355 VTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
+ +G+I NVSF+Y +L++ N++L++ + LVG +G+GKST+ +LL+ +Y +
Sbjct: 336 LQSGRIDIDNVSFAYRDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTE 395
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAE 474
GEI +DG+ +S++S LR+ + MV QD +L + N+ GR D SE +++ A + +
Sbjct: 396 GEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQ 454
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
+SL D G +GE G LS GQ+Q +A+ARV+++ IL+LDEAT+ +DS
Sbjct: 455 LAELARSLPD-----GLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDS 509
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYS 594
E AIQ++L + + T++ IAHRLSTI D ++VL G E+G+H LL G Y
Sbjct: 510 GTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQGRYW 569
Query: 595 RLWRHQ 600
++++ Q
Sbjct: 570 QMYQLQ 575
>gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter
membrane\ATP-binding components; Provisional.
Length = 569
Score = 184 bits (468), Expect = 9e-51
Identities = 88/236 (37%), Positives = 147/236 (62%), Gaps = 6/236 (2%)
Query: 366 SFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424
F+Y Q H + N++ T++PG+ +G+ G +G+GKST+ +L+ R +D+ G+I +
Sbjct: 320 QFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPL 379
Query: 425 SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTD 484
+ + +S R ++ +V+Q L ++ +NI GRPDA++ E+ + A+ A I L
Sbjct: 380 TKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLP- 438
Query: 485 EHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSL 544
+GYD VGE G+ LSGGQ+QRI+IAR +L NA IL+LD+A SA+D E I +L
Sbjct: 439 ----QGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNL 494
Query: 545 YNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
+G+TVI AHRLS ++ ++V+ +G +A+ G+H L +++G Y ++R+Q
Sbjct: 495 RQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQSGWYRDMYRYQ 550
>gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit. The
gene pair cydCD encodes an ABC-family transporter in
which each gene contains an N-terminal membrane-spanning
domain (pfam00664) and a C-terminal ATP-binding domain
(pfam00005). In E. coli these genes were discovered as
mutants which caused the terminal heme-copper oxidase
complex cytochrome bd to fail to assemble. Recent work
has shown that the transporter is involved in export of
redox-active thiol compounds such as cysteine and
glutathione. The linkage to assembly of the cytochrome
bd complex is further supported by the conserved operon
structure found outside the gammaproteobacteria
(cydABCD) containing both the transporter and oxidase
genes components. The genes used as the seed members for
this model are all either found in the
gammproteobacterial context or the CydABCD context. All
members of this family scoring above trusted at the time
of its creation were from genomes which encode a
cytochrome bd complex.
Length = 530
Score = 181 bits (460), Expect = 6e-50
Identities = 73/211 (34%), Positives = 125/211 (59%), Gaps = 5/211 (2%)
Query: 350 AKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
A + + + +++S Y +++ +SL + PGE++ ++G SG+GKST+ L
Sbjct: 325 AGAVGLGKPTLELRDLSAGYPGAPPVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGL 384
Query: 410 YDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNA 469
D GE+ +DG +S++ Q+ +R ++ + QD L ++R+N+ RPDA++ EL+ A
Sbjct: 385 LDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAA 444
Query: 470 AKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529
+ ++++L D G D +GE G +LSGG+RQR+A+AR +L +APILLLDE T
Sbjct: 445 LERVGLADWLRALPD-----GLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPT 499
Query: 530 SALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
LD+E + + L + G+TV+ I H L
Sbjct: 500 EHLDAETADELLEDLLAALSGRTVVLITHHL 530
>gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD,
subfamily C. The CYD subfamily implicated in cytochrome
bd biogenesis. The CydC and CydD proteins are important
for the formation of cytochrome bd terminal oxidase of
E. coli and it has been proposed that they were
necessary for biosynthesis of the cytochrome bd quinol
oxidase and for periplasmic c-type cytochromes. CydCD
were proposed to determine a heterooligomeric complex
important for heme export into the periplasm or to be
involved in the maintenance of the proper redox state of
the periplasmic space. In Bacillus subtilis, the absence
of CydCD does not affect the presence of halo-cytochrome
c in the membrane and this observation suggests that
CydCD proteins are not involved in the export of heme in
this organism.
Length = 178
Score = 170 bits (432), Expect = 1e-49
Identities = 74/223 (33%), Positives = 120/223 (53%), Gaps = 46/223 (20%)
Query: 360 IFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+ NVSFSY +Q+ ++ NLSL ++ GEKI L+GRSG+GKST+ LL + GEI
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
+DG +S++ +++L I ++ Q L ++R+N+
Sbjct: 61 LDGVPVSDL-EKALSSLISVLNQRPYLFDTTLRNNL------------------------ 95
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
G + SGG+RQR+A+AR++L++API+LLDE T LD E
Sbjct: 96 --------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITER 135
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581
+ ++ ++K KT+I I H L+ I MD+++ L+NG + +G
Sbjct: 136 QLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
>gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1,
subfamily C. Domain 2 of NFT1 (New full-length MRP-type
transporter 1). NFT1 belongs to the MRP (multidrug
resistance-associated protein) family of ABC
transporters. Some of the MRP members have five
additional transmembrane segments in their N-terminus,
but the function of these additional membrane-spanning
domains is not clear. The MRP was found in the
multidrug-resisting lung cancer cell in which
p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions such as
glutathione, glucuronate, and sulfate.
Length = 207
Score = 163 bits (414), Expect = 7e-47
Identities = 81/230 (35%), Positives = 127/230 (55%), Gaps = 29/230 (12%)
Query: 356 TNGKIFFKNVSFSYDQKHL--IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413
+G+I +N+S Y L ++ N+S ++ GEKIG+VGR+GAGKST+ L RF + +
Sbjct: 3 EHGEIEVENLSVRY-APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAE 61
Query: 414 YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI-LYGRPDASECELFNAAKC 472
G+I IDG +IS + E LR + ++ QD +L +IR N+ + S+ E++ A +
Sbjct: 62 EGKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDE--YSDEEIYGALR- 118
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
V E G+ LS GQRQ + +AR +LK +L+LDEAT+++
Sbjct: 119 ----------------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASI 156
Query: 533 DSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582
D + IQK++ T++ IAHRL TI D+++V+D G V E
Sbjct: 157 DYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
>gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of
PrtD, subfamily C. This family represents the ABC
component of the protease secretion system PrtD, a
60-kDa integral membrane protein sharing 37% identity
with HlyB, the ABC component of the alpha-hemolysin
secretion pathway, in the C-terminal domain. They export
degradative enzymes by using a type I protein secretion
system and lack an N-terminal signal peptide, but
contain a C-terminal secretion signal. The Type I
secretion apparatus is made up of three components, an
ABC transporter, a membrane fusion protein (MFP), and an
outer membrane protein (OMP). For the HlyA transporter
complex, HlyB (ABC transporter) and HlyD (MFP) reside in
the inner membrane of E. coli. The OMP component is
TolC, which is thought to interact with the MFP to form
a continuous channel across the periplasm from the
cytoplasm to the exterior. HlyB belongs to the family of
ABC transporters, which are ubiquitous, ATP-dependent
transmembrane pumps or channels. The spectrum of
transport substrates ranges from inorganic ions,
nutrients such as amino acids, sugars, or peptides,
hydrophobic drugs, to large polypeptides, such as HlyA.
Length = 173
Score = 154 bits (391), Expect = 6e-44
Identities = 71/217 (32%), Positives = 106/217 (48%), Gaps = 49/217 (22%)
Query: 363 KNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+NVSF Y + ++ N+S +I+PGE + ++G SG+GKST+ L+L G + +DG
Sbjct: 4 ENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKS 481
+IS L + +G + QD L SI +NIL
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENIL-------------------------- 97
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
SGGQRQR+ +AR + N IL+LDE S LD E E A+
Sbjct: 98 ---------------------SGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALN 136
Query: 542 KSLYNL-MKGKTVIAIAHRLSTISAMDRLIVLDNGCV 577
+++ L G T I IAHR T+++ DR++VL++G V
Sbjct: 137 QAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
>gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding
cassette component of cobalt transport system. Domain I
of the ABC component of a cobalt transport family found
in bacteria, archaea, and eukaryota. The transition
metal cobalt is an essential component of many enzymes
and must be transported into cells in appropriate
amounts when needed. This ABC transport system of the
CbiMNQO family is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most of cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 211
Score = 147 bits (373), Expect = 7e-41
Identities = 73/219 (33%), Positives = 119/219 (54%), Gaps = 15/219 (6%)
Query: 362 FKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420
KN+SFSY D ++++SLTI+ GE + +VG +G+GKST+ LL GE+L+D
Sbjct: 2 LKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVD 61
Query: 421 GQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
G++++ +S + LR ++G+V Q D ++ + + +G E + E +
Sbjct: 62 GKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFG------LENLGLPE-EEIEER 114
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
++ + G +G LSGGQ+QR+AIA V+ + ILLLDE T+ LD
Sbjct: 115 VEEALELVGLEGLRDRSPFT---LSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 539 AIQKSLYNLMK-GKTVIAIAHRLSTISA-MDRLIVLDNG 575
+ + L L GKT+I + H L + DR+IVL++G
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
>gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein
(MRP). This model describes multi drug
resistance-associated protein (MRP) in eukaryotes. The
multidrug resistance-associated protein is an integral
membrane protein that causes multidrug resistance when
overexpressed in mammalian cells. It belongs to ABC
transporter superfamily. The protein topology and
function was experimentally demonstrated by epitope
tagging and immunofluorescence. Insertion of tags in the
critical regions associated with drug efflux, abrogated
its function. The C-terminal domain seem to highly
conserved [Transport and binding proteins, Other].
Length = 1522
Score = 158 bits (401), Expect = 1e-40
Identities = 92/237 (38%), Positives = 141/237 (59%), Gaps = 7/237 (2%)
Query: 358 GKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
G++ F+N Y + L++ ++++TI GEK+G+VGR+GAGKS++ L R + GE
Sbjct: 1283 GRVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGE 1342
Query: 417 ILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEAD 476
I+IDG NI+ + LR +I ++ QD L S+R N L S+ E++ A + A
Sbjct: 1343 IIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMN-LDPFSQYSDEEVWWALELAHLK 1401
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
F+ +L D D E G LS GQRQ + +AR +L+ IL+LDEAT+A+D E
Sbjct: 1402 TFVSALPD-----KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLET 1456
Query: 537 EIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLY 593
+ IQ ++ + TV+ IAHRL+TI R+IVLD G VAE G+ +LL++ G++
Sbjct: 1457 DNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQRGIF 1513
Score = 99.2 bits (247), Expect = 2e-21
Identities = 68/244 (27%), Positives = 122/244 (50%), Gaps = 25/244 (10%)
Query: 360 IFFKNVSFSYDQKHL-IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I N +F++ + +N ++ +I G + +VG+ G GKS++ + LL D G +
Sbjct: 637 ITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVH 696
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAE-ADI 477
+ G + V Q + + S+R+NIL+G+ + CA D+
Sbjct: 697 MKGS-------------VAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDL 743
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
I D +GE G+ LSGGQ+QR+++AR + NA I L D+ SA+D+
Sbjct: 744 EILPSGDR-------TEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVG 796
Query: 538 IAIQKSLY---NLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYS 594
I + + ++K KT I + H +S + +D +IV+ G ++E GS+ +LL+++G ++
Sbjct: 797 KHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRDGAFA 856
Query: 595 RLWR 598
R
Sbjct: 857 EFLR 860
>gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding
protein-dependent transport systems. This class is
comprised of all BPD (Binding Protein Dependent) systems
that are largely represented in archaea and eubacteria
and are primarily involved in scavenging solutes from
the environment. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides, and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 178
Score = 143 bits (362), Expect = 7e-40
Identities = 73/220 (33%), Positives = 111/220 (50%), Gaps = 51/220 (23%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
KNVS Y QK ++N++SL I+ GE + L+G SG+GKST+ + + G ILIDG
Sbjct: 3 LKNVSKRYGQKT-VLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDG 61
Query: 422 QNISNVSQES--LREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIF 478
++++++ E LR +IGMV QD +L H ++ +NI G
Sbjct: 62 EDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG--------------------- 100
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
LSGGQ+QR+A+AR + + +LLLDE TSALD
Sbjct: 101 -----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRR 137
Query: 539 AIQKSLYNL--MKGKTVIAIAHRLSTISAM-DRLIVLDNG 575
++ L +L G TV+ + H L + + DR++VL +G
Sbjct: 138 EVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
>gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase
and permease components [General function prediction
only].
Length = 580
Score = 151 bits (384), Expect = 3e-39
Identities = 80/220 (36%), Positives = 124/220 (56%), Gaps = 6/220 (2%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430
QK I+ +S +Q GE +G++G SG+GKST+ LL+ + G + +DG ++ +E
Sbjct: 347 QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDRE 406
Query: 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
L IG + QD L +I +NI +A ++ AA+ A I L G
Sbjct: 407 QLGRHIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQ-----G 461
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK- 549
YD +GE G LSGGQRQRIA+AR + + +++LDE S LDSE E A+ ++
Sbjct: 462 YDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKAR 521
Query: 550 GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK 589
G TV+ IAHR S ++++D+++VL +G +A G ++L K
Sbjct: 522 GGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
>gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC
transporter, PrtD family. Type I protein secretion is a
system in some Gram-negative bacteria to export proteins
(often proteases) across both inner and outer membranes
to the extracellular medium. This is one of three
proteins of the type I secretion apparatus. Targeted
proteins are not cleaved at the N-terminus, but rather
carry signals located toward the extreme C-terminus to
direct type I secretion [Protein fate, Protein and
peptide secretion and trafficking].
Length = 544
Score = 149 bits (379), Expect = 8e-39
Identities = 77/235 (32%), Positives = 126/235 (53%), Gaps = 7/235 (2%)
Query: 357 NGKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
G + +NV+ K + +S ++Q GE + ++G SG+GKST+ L++ + G
Sbjct: 314 EGHLSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSG 373
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
+ +DG ++ +E+ + IG + QD L ++ +NI +A ++ AAK A
Sbjct: 374 SVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGV 433
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
I L D GYD +G G LSGGQRQRIA+AR + + +++LDE S LD E
Sbjct: 434 HELILRLPD-----GYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488
Query: 536 AEIAIQKSLYNLMK-GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK 589
E A+ ++ L G TV+ I HR S + +D+++VL +G +A G ++L K
Sbjct: 489 GEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543
>gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the
carbohydrate and solute transporters-like. This family
is comprised of proteins involved in the transport of
apparently unrelated solutes and proteins specific for
di- and oligosaccharides and polyols. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 213
Score = 140 bits (355), Expect = 3e-38
Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 25/228 (10%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
K +S +Y +++LSLT++PGE + L+G SG GK+T+ L+ GEILIDG
Sbjct: 3 LKGLSKTYGSVR-ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDG 61
Query: 422 QNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECELFNAAKCAEAD 476
++++ V E R IGMV QD +L H ++ +NI +G +E A+ E
Sbjct: 62 RDVTGVPPE--RRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIR----ARVREL- 114
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ + L R + +LSGGQ+QR+A+AR + + +LLLDE SALD++
Sbjct: 115 LELVGLEGLLNRYPH---------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAKL 165
Query: 537 EIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
+++ L L + G T I + H A+ DR+ V++ G + + G
Sbjct: 166 REELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
>gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional.
Length = 1622
Score = 150 bits (381), Expect = 5e-38
Identities = 92/251 (36%), Positives = 144/251 (57%), Gaps = 24/251 (9%)
Query: 358 GKIFFKNVSFSYDQKHL--IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
G I F++V Y + L +++ LS I P EK+G+VGR+GAGKS++ N L R +++ G
Sbjct: 1236 GSIKFEDVVLRY-RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERG 1294
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
ILIDG +IS LR+ +G++ Q L ++R N+ + FN +A
Sbjct: 1295 RILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNL----------DPFNEHN--DA 1342
Query: 476 DIFIKSLTDEHGR-------KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
D++ +SL H + G DA V E G S GQRQ +++AR +L+ + IL+LDEA
Sbjct: 1343 DLW-ESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEA 1401
Query: 529 TSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLL- 587
T+A+D + IQK++ K T++ IAHRL+TI DR++VLD G V E + +LL
Sbjct: 1402 TAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLS 1461
Query: 588 KKNGLYSRLWR 598
+ +S++ +
Sbjct: 1462 NEGSAFSKMVQ 1472
Score = 99.4 bits (248), Expect = 2e-21
Identities = 71/246 (28%), Positives = 131/246 (53%), Gaps = 33/246 (13%)
Query: 360 IFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
I KN FS+D K ++N++L + G + +VG +G GK+++ + +L GE+
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAML-------GEL 667
Query: 418 --LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
D + +R + V Q + + + ++RDNIL+G P F+ + A
Sbjct: 668 PPRSDASVV-------IRGTVAYVPQVSWIFNATVRDNILFGSP-------FDPERYERA 713
Query: 476 DIFIKSLT-DEHGRKGYD-AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
I + +L D G D +GE G+ +SGGQ+QR+++AR + N+ + + D+ SALD
Sbjct: 714 -IDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
Query: 534 SEAEIAIQ---KSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKN 590
A + Q K + + ++GKT + + ++L +S +DR+I++ G + EEG++ +L
Sbjct: 773 --AHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNNG 830
Query: 591 GLYSRL 596
L+ +L
Sbjct: 831 PLFQKL 836
>gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of
nickel/oligopeptides specific transporters. The ABC
transporter subfamily specific for the transport of
dipeptides, oligopeptides (OppD), and nickel (NikDE).
The NikABCDE system of E. coli belongs to this family
and is composed of the periplasmic binding protein NikA,
two integral membrane components (NikB and NikC), and
two ATPase (NikD and NikE). The NikABCDE transporter is
synthesized under anaerobic conditions to meet the
increased demand for nickel resulting from hydrogenase
synthesis. The molecular mechanism of nickel uptake in
many bacteria and most archaea is not known. Many other
members of this ABC family are also involved in the
uptake of dipeptides and oligopeptides. The oligopeptide
transport system (Opp) is a five-component ABC transport
composed of a membrane-anchored substrate binding
proteins (SRP), OppA, two transmembrane proteins, OppB
and OppC, and two ATP-binding domains, OppD and OppF.
Length = 228
Score = 139 bits (352), Expect = 1e-37
Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 29/237 (12%)
Query: 362 FKNVSFSYDQKHL---IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
KN+S S+ ++++S +I+ GE +GLVG SG+GKST+ +L G I+
Sbjct: 4 VKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSII 63
Query: 419 IDGQNISNVSQESLRE---QIGMVTQD--TSL-LHRSIRDNI-----LYGRPDASECELF 467
DG+++ +S+ + +I MV QD +SL +I + I ++G+ E
Sbjct: 64 FDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKE---- 119
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
A K A + + E Y H +LSGGQRQR+AIAR + N +L+ DE
Sbjct: 120 -ARKEAVLLLLVGVGLPEEVLNRY-PH------ELSGGQRQRVAIARALALNPKLLIADE 171
Query: 528 ATSALDSEAEIAIQKSLYNL--MKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
TSALD + I L L G T++ I H L ++ + DR+ V+ G + EEG
Sbjct: 172 PTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
>gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette
domain of the phosphate transport system. Phosphate
uptake is of fundamental importance in the cell
physiology of bacteria because phosphate is required as
a nutrient. The Pst system of E. coli comprises four
distinct subunits encoded by the pstS, pstA, pstB, and
pstC genes. The PstS protein is a phosphate-binding
protein located in the periplasmic space. PstA and PstC
are hydrophobic and they form the transmembrane portion
of the Pst system. PstB is the catalytic subunit, which
couples the energy of ATP hydrolysis to the import of
phosphate across cellular membranes through the Pst
system, often referred as ABC-protein. PstB belongs to
one of the largest superfamilies of proteins
characterized by a highly conserved adenosine
triphosphate (ATP) binding cassette (ABC), which is also
a nucleotide binding domain (NBD).
Length = 227
Score = 138 bits (350), Expect = 1e-37
Identities = 76/234 (32%), Positives = 115/234 (49%), Gaps = 26/234 (11%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY-----GE 416
++++ Y KH + ++SL I GE L+G SG GKST+ LL R D+ GE
Sbjct: 3 LRDLNVYYGDKH-ALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGE 61
Query: 417 ILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAE 474
+L+DG++I +V LR ++GMV Q + SI DN+ YG + E
Sbjct: 62 VLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVE 121
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
+ +L DE + H + LSGGQ+QR+ +AR + +LLLDE TSALD
Sbjct: 122 EALRKAALWDEVKDR-------LHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDP 174
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAH------RLSTISAMDRLIVLDNGCVAEEGS 582
+ I++ + L K T++ + H R++ DR L NG + E G
Sbjct: 175 ISTAKIEELIAELKKEYTIVIVTHNMQQAARVA-----DRTAFLLNGRLVEFGP 223
>gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase
component [Defense mechanisms].
Length = 293
Score = 140 bits (355), Expect = 2e-37
Identities = 72/241 (29%), Positives = 120/241 (49%), Gaps = 25/241 (10%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +N++ Y ++ +S ++PGE GL+G +GAGK+T+ +L GEIL+
Sbjct: 5 IEVRNLTKKYGGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILV 64
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNI-----LYGRPDASECELFNAAKCA 473
G ++ +R +IG V Q+ SL ++R+N+ LYG +
Sbjct: 65 LGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKE-----EAEERIE 118
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
E + + L D+ +K LSGG +QR++IA +L + +L+LDE TS LD
Sbjct: 119 EL-LELFGLEDKANKKVR---------TLSGGMKQRLSIALALLHDPELLILDEPTSGLD 168
Query: 534 SEAEIAIQKSLYNL--MKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKN 590
E+ I + L L G T++ H L + DR+I+L++G + EG+ +L +K
Sbjct: 169 PESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKF 228
Query: 591 G 591
G
Sbjct: 229 G 229
>gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette
domain of methionine transporter. MetN (also known as
YusC) is an ABC-type transporter encoded by metN of the
metNPQ operon in Bacillus subtilis that is involved in
methionine transport. Other members of this system
include the MetP permease and the MetQ substrate binding
protein. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 233
Score = 136 bits (346), Expect = 8e-37
Identities = 82/248 (33%), Positives = 128/248 (51%), Gaps = 36/248 (14%)
Query: 360 IFFKNVSFSYDQKHLII---NNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYDI 412
I KNVS + + ++SL++ GE G++GRSGAGKST IN L
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCIN--GLERPT- 58
Query: 413 KYGEILIDGQNISNVSQESLRE---QIGMVTQDTSLL-HRSIRDNILYGRPDASECELFN 468
G +L+DG +++ +S + LR+ +IGM+ Q +LL R++ +N+ P E+
Sbjct: 59 -SGSVLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVAL--P----LEIAG 111
Query: 469 AAKCAEADIFIKSLTD----EHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524
K AE + + L + E Y A +LSGGQ+QR+ IAR + N +LL
Sbjct: 112 VPK-AEIEERVLELLELVGLEDKADAYPA-------QLSGGQKQRVGIARALANNPKVLL 163
Query: 525 LDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEG 581
DEATSALD E +I L ++ + G T++ I H + + DR+ V++ G V EEG
Sbjct: 164 CDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEG 223
Query: 582 SHLDLLKK 589
+ ++
Sbjct: 224 TVEEVFAN 231
>gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 339
Score = 138 bits (351), Expect = 2e-36
Identities = 85/247 (34%), Positives = 134/247 (54%), Gaps = 39/247 (15%)
Query: 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
I +NVS ++ Q ++++SL I GE G++G SGAGKST+ L+ G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 416 EILIDGQNISNVSQESLRE---QIGMVTQDTSLLH-RSIRDNILY-----GRPDASECEL 466
+ +DGQ+++ +S+ LR+ +IGM+ Q +LL R++ +N+ + G P A E +
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKA-EIK- 119
Query: 467 FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
+ AE + + L+D+ R Y A +LSGGQ+QR+AIAR + N ILL D
Sbjct: 120 ---QRVAEL-LELVGLSDKADR--YPA-------QLSGGQKQRVAIARALANNPKILLCD 166
Query: 527 EATSALDSEAEIAIQKSLYNLMK------GKTVIAIAHRLSTI-SAMDRLIVLDNGCVAE 579
EATSALD +S+ L+K G T++ I H + + DR+ VLD G + E
Sbjct: 167 EATSALD----PETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVE 222
Query: 580 EGSHLDL 586
EG+ ++
Sbjct: 223 EGTVSEV 229
>gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 352
Score = 138 bits (351), Expect = 2e-36
Identities = 73/226 (32%), Positives = 126/226 (55%), Gaps = 18/226 (7%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+NVS S+ ++++SL I+ GE + L+G SG GK+T+ ++ F GEIL+DG
Sbjct: 8 IRNVSKSFGDF-TAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG 66
Query: 422 QNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
++I++V E + IGMV Q +L H ++ +N+ +G ++ K AE ++
Sbjct: 67 EDITDVPPE--KRPIGMVFQSYALFPHMTVEENVAFG------LKVRKKLKKAEIKARVE 118
Query: 481 SLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIA 539
+ G +G+ D + LSGGQ+QR+A+AR ++ +LLLDE SALD++
Sbjct: 119 EALELVGLEGFADRKPHQ----LSGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQ 174
Query: 540 IQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
++K L L + G T + + H AM DR+ V+++G + + G+
Sbjct: 175 MRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGT 220
>gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of
multidrug resistance-associated protein, subfamily C.
This subfamily is also known as MRP (multidrug
resistance-associated protein). Some of the MRP members
have five additional transmembrane segments in their
N-terminus, but the function of these additional
membrane-spanning domains is not clear. The MRP was
found in the multidrug-resisting lung cancer cell in
which p-glycoprotein was not overexpressed. MRP exports
glutathione by drug stimulation, as well as, certain
substrates in conjugated forms with anions, such as
glutathione, glucuronate, and sulfate.
Length = 204
Score = 134 bits (339), Expect = 3e-36
Identities = 72/234 (30%), Positives = 119/234 (50%), Gaps = 53/234 (22%)
Query: 362 FKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
++ SF++D + +++L + GE + +VG G+GKS++ + LL GE+
Sbjct: 3 VEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALL-------GEL 55
Query: 418 -LIDGQ-----NISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAK 471
+ G +I+ VSQE + + +IR+NIL+G+P F+ +
Sbjct: 56 EKLSGSVSVPGSIAYVSQEPW------------IQNGTIRENILFGKP-------FDEER 96
Query: 472 -------CA-EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523
CA E D+ + L D G +GE GI LSGGQ+QRI++AR + +A I
Sbjct: 97 YEKVIKACALEPDL--EILPD-----GDLTEIGEKGINLSGGQKQRISLARAVYSDADIY 149
Query: 524 LLDEATSALDSEAEIAIQKSLY--NLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
LLD+ SA+D+ I ++ L+ KT I + H+L + D+++VLDNG
Sbjct: 150 LLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
>gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional.
Length = 1466
Score = 144 bits (364), Expect = 7e-36
Identities = 95/303 (31%), Positives = 155/303 (51%), Gaps = 69/303 (22%)
Query: 357 NGKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
GKI +V+F Y + I +L+ + + +VG +G+GKST+ +LL+RFYD+K
Sbjct: 1163 KGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKN 1222
Query: 415 GEILI--------------------------------------DGQN------------- 423
++ G++
Sbjct: 1223 DHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLD 1282
Query: 424 ---ISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
I + + + LR +V+Q+ L + SI +NI +G+ DA+ ++ A K A D FI+
Sbjct: 1283 GVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIE 1342
Query: 481 SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAI 540
SL ++ YD +VG +G LSGGQ+QRIAIAR +L+ ILLLDEATS+LDS +E I
Sbjct: 1343 SLPNK-----YDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLI 1397
Query: 541 QKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDN-----GCVAEEGSHLDLLK-KNGL 592
+K++ ++ KT+I IAHR+++I D+++V +N V G+H +LL ++G+
Sbjct: 1398 EKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGV 1457
Query: 593 YSR 595
Y +
Sbjct: 1458 YKK 1460
Score = 138 bits (348), Expect = 7e-34
Identities = 96/288 (33%), Positives = 142/288 (49%), Gaps = 57/288 (19%)
Query: 344 IVDNYNAKRLVVTNGKIFFKNVSFSYDQKH--LIINNLSLTIQPGEKIGLVGRSGAGKST 401
+V+N + + + KI FKNV F YD + I +L+ T+ G+ VG SG GKST
Sbjct: 367 LVENNDDGKKLKDIKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKST 426
Query: 402 INNLLLRFYDIKYGEILI-DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD 460
I L+ R YD G+I+I D N+ +++ + R +IG+V+QD L SI++NI Y
Sbjct: 427 ILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYS 486
Query: 461 ASECELFN--------------------AAKCA-EADIFIKSLTDE---HGRKG------ 490
+ E + AKCA + + + RK
Sbjct: 487 LKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKD 546
Query: 491 ----------------------YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
Y+ VG + KLSGGQ+QRI+IAR I++N IL+LDEA
Sbjct: 547 SEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEA 606
Query: 529 TSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISAMDRLIVLDN 574
TS+LD+++E +QK++ NL + + I IAHRLSTI + + VL N
Sbjct: 607 TSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSN 654
>gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 235
Score = 134 bits (339), Expect = 7e-36
Identities = 73/238 (30%), Positives = 120/238 (50%), Gaps = 18/238 (7%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +N+SF Y + + ++SL I+ GE++ L+G +G+GKST+ LL GE+L+
Sbjct: 4 IEAENLSFRYPGRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLV 63
Query: 420 DGQNISNV-SQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAAKCAEAD 476
DG + S+ S LR+++G+V Q D L ++ D + +G E +
Sbjct: 64 DGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFG-------LENLGLPREEIE 116
Query: 477 IFIKSLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ + G + D LSGGQ+QR+AIA V+ ILLLDE T+ LD +
Sbjct: 117 ERVAEALELVGLEELLDRPPFN----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPK 172
Query: 536 AEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLLKKN 590
+ + L L + GKT+I + H L + DR++VLD+G + +G ++
Sbjct: 173 GRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
>gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the
sulfonylurea receptor SUR. The SUR domain 2. The
sulfonylurea receptor SUR is an ATP binding cassette
(ABC) protein of the ABCC/MRP family. Unlike other ABC
proteins, it has no intrinsic transport function,
neither active nor passive, but associates with the
potassium channel proteins Kir6.1 or Kir6.2 to form the
ATP-sensitive potassium (K(ATP)) channel. Within the
channel complex, SUR serves as a regulatory subunit that
fine-tunes the gating of Kir6.x in response to
alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 257
Score = 135 bits (340), Expect = 8e-36
Identities = 84/248 (33%), Positives = 141/248 (56%), Gaps = 8/248 (3%)
Query: 353 LVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD 411
LV G+I ++ Y+ ++ ++ I+PG+K+G+ GR+G+GKS+++ R D
Sbjct: 13 LVGLGGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVD 72
Query: 412 IKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAK 471
I G+I+IDG +IS + +LR ++ ++ QD L SIR N L ++ L+ A +
Sbjct: 73 IFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFN-LDPECKCTDDRLWEALE 131
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
A+ +KSL G DA V E G S GQRQ +AR ++ + IL++DEAT++
Sbjct: 132 IAQLKNMVKSLPG-----GLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATAS 186
Query: 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLL-KKN 590
+D E +QK + +TV+ IAHR+STI D ++VL G + E + +LL +++
Sbjct: 187 IDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQED 246
Query: 591 GLYSRLWR 598
G+++ L R
Sbjct: 247 GVFASLVR 254
>gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 226
Score = 131 bits (331), Expect = 6e-35
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 31/237 (13%)
Query: 360 IFFKNVSFSY---DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLL--LRFYDIKY 414
I KNVS Y +K + +++L I+ GE + +VG SG+GKST+ NLL L
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTS-- 59
Query: 415 GEILIDGQNISNVSQESL----REQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNA 469
GE+LI+G++++ +S++ L R++IG V Q+ +LL ++ +N+ L
Sbjct: 60 GEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPL-------LIAG 112
Query: 470 AKCAEADIFIKSLTD----EHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL 525
+ L + E +LSGGQ+QR+AIAR ++ N I+L
Sbjct: 113 KSAGRRKRAAEELLEVLGLEDRLLKKKPS------ELSGGQQQRVAIARALINNPKIILA 166
Query: 526 DEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580
DE T LDS+ + + L L K GKT+I + H DR+I L +G + EE
Sbjct: 167 DEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
>gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport
systems, ATPase components [Inorganic ion transport and
metabolism / Coenzyme metabolism].
Length = 258
Score = 130 bits (330), Expect = 2e-34
Identities = 72/226 (31%), Positives = 122/226 (53%), Gaps = 15/226 (6%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+N+SF Y K I+++LS +I GE G++G +G+GKST+ L K GE+L+DG+
Sbjct: 6 ENLSFGYGGK-PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 423 NISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGR-PDASECELFNAAKCAEADIFIK 480
+I+++S + L +++ V Q S ++ + +L GR P + + ++
Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124
Query: 481 SL-TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIA 539
L + + D LSGG+RQR+ IAR + + PILLLDE TS LD +I
Sbjct: 125 LLGLEHLADRPVDE--------LSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIE 176
Query: 540 IQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
+ + L +L + G TV+ + H L+ + D LI+L +G + +G+
Sbjct: 177 VLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGT 222
>gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the
transporters involved in export of lipoprotein and
macrolide, and cell division protein. This family is
comprised of MJ0796 ATP-binding cassette,
macrolide-specific ABC-type efflux carrier (MacAB), and
proteins involved in cell division (FtsE), and release
of lipoproteins from the cytoplasmic membrane (LolCDE).
They are clustered together phylogenetically. MacAB is
an exporter that confers resistance to macrolides, while
the LolCDE system is not a transporter at all. An FtsE
null mutants showed filamentous growth and appeared
viable on high salt medium only, indicating a role for
FtsE in cell division and/or salt transport. The LolCDE
complex catalyzes the release of lipoproteins from the
cytoplasmic membrane prior to their targeting to the
outer membrane.
Length = 218
Score = 129 bits (326), Expect = 3e-34
Identities = 73/225 (32%), Positives = 109/225 (48%), Gaps = 22/225 (9%)
Query: 362 FKNVSFSY---DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
KN+S +Y +K + +SL+I+ GE + +VG SG+GKST+ N+L GE+
Sbjct: 3 LKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVR 62
Query: 419 IDGQNISNVSQESL----REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCA 473
+DG +IS +S++ L R IG V Q +LL + +N+ L
Sbjct: 63 VDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELP-------LLLAGVPKK 115
Query: 474 EADIFIKSLTDEHGRKGYDAH-VGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
E + L + G H E LSGGQ+QR+AIAR + + I+L DE T L
Sbjct: 116 ERRERAEELLERVGLGDRLNHYPSE----LSGGQQQRVAIARALANDPKIILADEPTGNL 171
Query: 533 DSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNG 575
DSE + + L L K G T++ + H DR+I L +G
Sbjct: 172 DSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDG 216
>gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of
iron-siderophores, vitamin B12 and hemin transporters
and related proteins. ABC transporters, involved in the
uptake of siderophores, heme, and vitamin B12, are
widely conserved in bacteria and archaea. Only very few
species lack representatives of the siderophore family
transporters. The E. coli BtuCD protein is an ABC
transporter mediating vitamin B12 uptake. The two
ATP-binding cassettes (BtuD) are in close contact with
each other, as are the two membrane-spanning subunits
(BtuC); this arrangement is distinct from that observed
for the E. coli lipid flippase MsbA. The BtuC subunits
provide 20 transmembrane helices grouped around a
translocation pathway that is closed to the cytoplasm by
a gate region, whereas the dimer arrangement of the BtuD
subunits resembles the ATP-bound form of the Rad50 DNA
repair enzyme. A prominent cytoplasmic loop of BtuC
forms the contact region with the ATP-binding cassette
and represent a conserved motif among the ABC
transporters.
Length = 180
Score = 127 bits (323), Expect = 3e-34
Identities = 70/226 (30%), Positives = 112/226 (49%), Gaps = 55/226 (24%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+N+S Y + ++++LSL+I+ GE +G++G +GAGKST+ L GEIL+DG+
Sbjct: 3 ENLSVGYGGRT-VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 423 NISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSL 482
+++++S + L +I V Q EL A A+ +
Sbjct: 62 DLASLSPKELARKIAYVPQ---------------------ALELLGLAHLAD-----RPF 95
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
+ LSGG+RQR+ +AR + + PILLLDE TS LD IA Q
Sbjct: 96 NE-----------------LSGGERQRVLLARALAQEPPILLLDEPTSHLD----IAHQI 134
Query: 543 SLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
L L++ GKTV+ + H L+ + DR+I+L +G + +G
Sbjct: 135 ELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
>gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of
the nitrate and sulfonate transporters. NrtD and SsuB
are the ATP-binding subunits of the bacterial ABC-type
nitrate and sulfonate transport systems, respectively.
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 220
Score = 127 bits (321), Expect = 1e-33
Identities = 70/221 (31%), Positives = 114/221 (51%), Gaps = 24/221 (10%)
Query: 362 FKNVSFSYDQK---HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+NVS +Y + ++SL+++ GE + LVG SG GKST+ ++ GE+L
Sbjct: 3 VRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVL 62
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADI 477
+DG+ ++ G V Q +LL ++ DN+ G EL K AEA
Sbjct: 63 VDGEPVTGPG-----PDRGYVFQQDALLPWLTVLDNVALGL------ELQGVPK-AEARE 110
Query: 478 FIKSLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ L + G G+ +A+ + LSGG RQR+A+AR + + +LLLDE SALD+
Sbjct: 111 RAEELLELVGLSGFENAYPHQ----LSGGMRQRVALARALAVDPDVLLLDEPFSALDALT 166
Query: 537 EIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDN 574
+Q+ L ++ + GKTV+ + H + + DR++VL
Sbjct: 167 REQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSA 207
>gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport
systems, contain duplicated ATPase [General function
prediction only].
Length = 539
Score = 134 bits (340), Expect = 2e-33
Identities = 77/244 (31%), Positives = 121/244 (49%), Gaps = 38/244 (15%)
Query: 363 KNVSFSYDQK----------HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI 412
+N+S Y + ++++S ++ GE +GLVG SG+GKST+ +L
Sbjct: 284 RNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPP 343
Query: 413 KYGEILIDGQNISNVSQE--SLREQIGMVTQD--TSLLHR-SIRDNILYGRPDASECELF 467
G I+ DGQ++ E LR +I MV QD +SL R ++ D + A +
Sbjct: 344 SSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDIL------AEPLRIH 397
Query: 468 NAAKCAEADIFIKSLTDEHG--RKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL 525
AE + L + G + D + E LSGGQRQR+AIAR + +L+L
Sbjct: 398 GGGSGAERRARVAELLELVGLPPEFLDRYPHE----LSGGQRQRVAIARALALEPKLLIL 453
Query: 526 DEATSALDSEAEIAIQKSLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCVA 578
DE SALD +++Q + NL+K G T + I+H L+ + + DR+ V+ +G +
Sbjct: 454 DEPVSALD----VSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIV 509
Query: 579 EEGS 582
EEG
Sbjct: 510 EEGP 513
Score = 130 bits (330), Expect = 2e-32
Identities = 74/246 (30%), Positives = 119/246 (48%), Gaps = 32/246 (13%)
Query: 364 NVSF-SYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYDIKYGEIL 418
V F + + + ++S ++PGE +G+VG SG+GKST + LL I GE++
Sbjct: 12 TVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVI 71
Query: 419 IDGQNISNVSQESLRE----QIGMVTQD--TSL--LHRSIRDNI---LYGRPDASECELF 467
+DG+++ +S+ +R+ +I M+ QD TSL + I D I L S E
Sbjct: 72 LDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMT-IGDQIREALRLHGKGSRAEAR 130
Query: 468 NAAKCAEADIFIK-SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
A ++ + L D R Y H LSGG RQR+ IA + +L+ D
Sbjct: 131 KRAV----ELLEQVGLPDPERRDRY-PHQ------LSGGMRQRVMIAMALALKPKLLIAD 179
Query: 527 EATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSH 583
E T+ALD + I L +L + G V+ I H L ++ + DR++V+ G + E G
Sbjct: 180 EPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPT 239
Query: 584 LDLLKK 589
++L
Sbjct: 240 EEILSN 245
>gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase
component [Amino acid transport and metabolism].
Length = 240
Score = 127 bits (322), Expect = 2e-33
Identities = 71/250 (28%), Positives = 118/250 (47%), Gaps = 46/250 (18%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYDIKYG 415
I KN+S S+ K ++ +SL+++ GE + ++G SG+GKST +N L + G
Sbjct: 3 IEIKNLSKSFGDKE-VLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLE----EPDSG 57
Query: 416 EILIDGQNISNVSQ-ESLREQIGMVTQDTSLL-HRSIRDNILY------GRPDASECELF 467
I +DG+++ + LR ++GMV Q +L H ++ +N+
Sbjct: 58 SITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSK------- 110
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVG------EHGIKLSGGQRQRIAIARVILKNAP 521
AEA E + VG + +LSGGQ+QR+AIAR + +
Sbjct: 111 -----AEA--------REKALE-LLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPK 156
Query: 522 ILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVLDNGCVAE 579
++L DE TSALD E + + +L + G T+I + H + + DR+I +D G + E
Sbjct: 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIE 216
Query: 580 EGSHLDLLKK 589
EG +
Sbjct: 217 EGPPEEFFDN 226
>gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional.
Length = 1560
Score = 136 bits (345), Expect = 2e-33
Identities = 84/241 (34%), Positives = 130/241 (53%), Gaps = 22/241 (9%)
Query: 355 VTNGKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413
V G + F+ V Y + L++ +S I P EK+G+VGR+G+GKST+ +R ++
Sbjct: 1304 VQAGSLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVC 1363
Query: 414 YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRP--DASECELFNAAK 471
GEI ++G+ I LR Q M+ QD L ++R N+ P +AS E++ A +
Sbjct: 1364 GGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNV---DPFLEASSAEVWAALE 1420
Query: 472 CAEADIFIKSLTDEHGR-----KGYDAHVGEHGIKLSGGQRQRIAIARVILK-NAPILLL 525
L R +G D+ V E G S GQRQ + +AR +LK + +L+
Sbjct: 1421 ----------LVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILM 1470
Query: 526 DEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLD 585
DEAT+ +D + IQ ++ + TVI IAHRL T++ D++IV+D+G VAE GS +
Sbjct: 1471 DEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRE 1530
Query: 586 L 586
L
Sbjct: 1531 L 1531
Score = 86.0 bits (213), Expect = 2e-17
Identities = 57/217 (26%), Positives = 110/217 (50%), Gaps = 24/217 (11%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE 434
++ ++S+++ G+ ++G +G+GKST+ LL ++I G + +
Sbjct: 675 LLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-------------R 721
Query: 435 QIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCA--EADIFIKSLTDEHGRKGYD 492
I V Q +++ ++R NIL+ + + L +A + + EAD+ L G +
Sbjct: 722 SIAYVPQQAWIMNATVRGNILFFDEEDAA-RLADAVRVSQLEADL--AQLG-----GGLE 773
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE-AEIAIQKSLYNLMKGK 551
+GE G+ LSGGQ+ R+++AR + N + LLD+ SALD+ E +++ + GK
Sbjct: 774 TEIGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGK 833
Query: 552 TVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLK 588
T + H++ + D ++ L +G V GS D ++
Sbjct: 834 TRVLATHQVHVVPRADYVVALGDGRVEFSGSSADFMR 870
>gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport
system, ATPase component [Inorganic ion transport and
metabolism].
Length = 248
Score = 126 bits (320), Expect = 4e-33
Identities = 66/227 (29%), Positives = 108/227 (47%), Gaps = 32/227 (14%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+ + VS S+ ++ +++L+++ GE + ++G SG GKST+ L+ GE+L
Sbjct: 3 LLEIEGVSKSFGG-VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVL 61
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADI 477
+DG+ ++ IG V Q+ +LL ++ DN+ G + A
Sbjct: 62 LDGRPVT-----GPGPDIGYVFQEDALLPWLTVLDNVALGLELR-----GKSKAEARERA 111
Query: 478 FIKSLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
K L + G G+ D + + LSGG RQR+AIAR + +LLLDE ALD+
Sbjct: 112 --KELLELVGLAGFEDKYPHQ----LSGGMRQRVAIARALATRPKLLLLDEPFGALDALT 165
Query: 537 EIAIQKSLYNLMK--GKTVIAIAH------RLSTISAMDRLIVLDNG 575
+Q L L + KTV+ + H L+ DR++VL N
Sbjct: 166 REELQDELLRLWEETRKTVLLVTHDVDEAVYLA-----DRVVVLSNR 207
>gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems,
ATPase components [Amino acid transport and metabolism].
Length = 309
Score = 127 bits (320), Expect = 2e-32
Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 19/237 (8%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F+NVS Y K +++++LTI+ GE + L+G SG+GK+T ++ R + GEILI
Sbjct: 2 IEFENVSKRYGNKK-AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILI 60
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKC-AEADI 477
DG++IS++ LR +IG V Q L H ++ +NI + ++ + AD
Sbjct: 61 DGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIAT----VPKLLGWDKERIKKRADE 116
Query: 478 FIKS--LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ L Y +LSGGQ+QR+ +AR + + PILL+DE ALD
Sbjct: 117 LLDLVGLDPSEYADRYPH-------ELSGGQQQRVGVARALAADPPILLMDEPFGALDPI 169
Query: 536 AEIAIQKSLYNLMK--GKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKK 589
+Q+ + L K GKT++ + H + + DR+ V+D G + + + ++L
Sbjct: 170 TRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILAN 226
>gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of
the osmoprotectant transporter. OpuCA is a the ATP
binding component of a bacterial solute transporter that
serves a protective role to cells growing in a
hyperosmolar environment. ABC (ATP-binding cassette)
transporter nucleotide-binding domain; ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds, like sugars,
ions, peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition, to the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 242
Score = 124 bits (314), Expect = 2e-32
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 26/239 (10%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F+NV+ Y +NNL+L I GE + L+G SG+GK+T ++ R + GEI I
Sbjct: 1 IEFENVTKRYGGGKKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFI 60
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNI-----LYGRPDASECELFNAAKCA 473
DG++I LR +IG V Q L H ++ +NI L P
Sbjct: 61 DGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPK--------EKIRE 112
Query: 474 EADIFIK--SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
AD + L Y +LSGGQ+QR+ +AR + + P+LL+DE A
Sbjct: 113 RADELLALVGLDPAEFADRYPH-------ELSGGQQQRVGVARALAADPPLLLMDEPFGA 165
Query: 532 LDSEAEIAIQKSLYNLMK--GKTVIAIAHRL-STISAMDRLIVLDNGCVAEEGSHLDLL 587
LD +Q+ L + GKT++ + H + DR+ ++ NG + + G+ ++L
Sbjct: 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
>gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 252
Score = 123 bits (312), Expect = 5e-32
Identities = 79/239 (33%), Positives = 122/239 (51%), Gaps = 29/239 (12%)
Query: 363 KNVSFSYDQKHL---IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+N+S Y +NN+SL I+ GE +G+VG SG+GKST+ LL G IL+
Sbjct: 7 RNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILL 66
Query: 420 DGQNISNVSQE-SLREQIGMVTQD-TSLLH--RSIRDNILYGRPDASECELFNAAKCAEA 475
DG+ ++ + + + MV QD S L+ R++ + SE + ++
Sbjct: 67 DGKPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRIL-------SEPLRPHGLSKSQQ 119
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
I + L + H +LSGGQRQRIAIAR ++ +L+LDE TSALD
Sbjct: 120 RI-AELLDQVGLPPSF-LDRRPH--ELSGGQRQRIAIARALIPEPKLLILDEPTSALD-- 173
Query: 536 AEIAIQKSLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLL 587
+++Q + NL+ G T + I+H L+ + M DR+ V+DNG + E G +LL
Sbjct: 174 --VSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELL 230
>gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase
component [Amino acid transport and metabolism].
Length = 268
Score = 124 bits (313), Expect = 5e-32
Identities = 69/233 (29%), Positives = 107/233 (45%), Gaps = 56/233 (24%)
Query: 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
K F F + ++ +S +I+ GE +GLVG SG GKST+ L+L + GE
Sbjct: 10 LKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGE 69
Query: 417 ILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEAD 476
IL +G++I+ +S+E RE++ LL +
Sbjct: 70 ILFEGKDITKLSKEERRERVL------ELLEK---------------------------- 95
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
L +E + Y +LSGGQRQRI IAR + N +++ DE SALD
Sbjct: 96 ---VGLPEEFLYR-YP-------HELSGGQRQRIGIARALALNPKLIVADEPVSALD--- 141
Query: 537 EIAIQKSLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
+++Q + NL+K G T + I+H LS + + DR+ V+ G + E G
Sbjct: 142 -VSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193
>gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional.
Length = 1495
Score = 132 bits (332), Expect = 7e-32
Identities = 113/434 (26%), Positives = 210/434 (48%), Gaps = 30/434 (6%)
Query: 172 ILTIIGTFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIM 231
++ + T +++ + P +I A +Y+ + + RS + + +A +
Sbjct: 1044 LIGTVSTISLWAIMPLLILFYA---AYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLS 1100
Query: 232 TVKLFSHAGREA--------NYARFAMIDFLKKIYQQMRLISSFEIINHLLAMLLILG-- 281
+++ + R A N RF + + + +RL + ++ L A +L
Sbjct: 1101 SIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRWLTIRLETLGGVMIWLTATFAVLRNG 1160
Query: 282 -TTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSK 340
A F T G+L + T +S L S + S+ + + +++ S+
Sbjct: 1161 NAENQAGFASTMGLLLSYTLNITTLLSGVLRQAS-----KAENSLNSVERVGNYIDLPSE 1215
Query: 341 KYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGK 399
I++N + G I F++V Y +++ LS + P EK+G+VGR+GAGK
Sbjct: 1216 ATAIIENNRPVSGWPSRGSIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGK 1275
Query: 400 STINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRP 459
S++ N L R +++ G I+ID +++ LR + ++ Q L ++R NI P
Sbjct: 1276 SSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNI---DP 1332
Query: 460 --DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517
+ ++ +L+ A + A IK + D + G DA V E G S GQRQ +++AR +L
Sbjct: 1333 FSEHNDADLWEALERAH----IKDVIDRNPF-GLDAEVSEGGENFSVGQRQLLSLARALL 1387
Query: 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCV 577
+ + IL+LDEAT+++D + IQ+++ K T++ IAHRL+TI D+++VL +G V
Sbjct: 1388 RRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQV 1447
Query: 578 AEEGSHLDLLKKNG 591
E S +LL ++
Sbjct: 1448 LEYDSPQELLSRDT 1461
Score = 95.4 bits (237), Expect = 3e-20
Identities = 69/246 (28%), Positives = 127/246 (51%), Gaps = 21/246 (8%)
Query: 360 IFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
I KN FS+D K +++++L I G + +VG +G GK+++ + +L GE+
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML-------GEL 667
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI 477
+ + S +R + V Q + + + ++R+NIL+G S+ E + +
Sbjct: 668 -----SHAETSSVVIRGSVAYVPQVSWIFNATVRENILFG----SDFESERYWRAIDVTA 718
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE-A 536
L GR +GE G+ +SGGQ+QR+++AR + N+ I + D+ SALD+ A
Sbjct: 719 LQHDLDLLPGRD--LTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVA 776
Query: 537 EIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596
+ + +KGKT + + ++L + MDR+I++ G + EEG+ +L K L+ +L
Sbjct: 777 HQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSGSLFKKL 836
Query: 597 WRHQNK 602
+ K
Sbjct: 837 MENAGK 842
>gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the
drug resistance transporter and related proteins,
subfamily A. This family of ATP-binding proteins
belongs to a multi-subunit transporter involved in drug
resistance (BcrA and DrrA), nodulation, lipid transport,
and lantibiotic immunity. In bacteria and archaea, these
transporters usually include an ATP-binding protein and
one or two integral membrane proteins. Eukaryotic
systems of the ABCA subfamily display ABC domains that
are quite similar to this family. The ATP-binding domain
shows the highest similarity between all members of the
ABC transporter family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 173
Score = 120 bits (304), Expect = 9e-32
Identities = 62/218 (28%), Positives = 108/218 (49%), Gaps = 51/218 (23%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+N+S Y +K ++++SLT++ GE GL+G +GAGK+T+ ++L GEI + G+
Sbjct: 4 RNLSKRYGKKT-ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK 62
Query: 423 NISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKS 481
+I E ++ +IG + ++ SL ++R+N
Sbjct: 63 DIKK-EPEEVKRRIGYLPEEPSLYENLTVREN---------------------------- 93
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
+KLSGG +QR+A+A+ +L + +L+LDE TS LD E+
Sbjct: 94 ------------------LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFW 135
Query: 542 KSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVLDNGCV 577
+ L L K GKT++ +H L + DR+ +L+NG +
Sbjct: 136 ELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
>gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system,
ATPase component [Inorganic ion transport and
metabolism].
Length = 258
Score = 123 bits (311), Expect = 9e-32
Identities = 77/235 (32%), Positives = 121/235 (51%), Gaps = 19/235 (8%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I KN+S +Y H + +++L I GE + ++G SGAGKST+ L D GEIL
Sbjct: 4 IEVKNLSKTYPGGHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILF 63
Query: 420 DGQNISNVSQESLRE---QIGMVTQDTSLLHR-SIRDNILYGRPD-----ASECELFNAA 470
+G I+ + + LR+ IGM+ Q +L+ R S+ +N+L GR S LF+
Sbjct: 64 NGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKE 123
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
A+A + +L R G + LSGGQ+QR+AIAR +++ I+L DE +
Sbjct: 124 DKAQA---LDALE----RVGILDKAYQRASTLSGGQQQRVAIARALVQQPKIILADEPVA 176
Query: 531 ALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
+LD E+ + L ++ + G TVI H++ DR+I L G + +G
Sbjct: 177 SLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231
>gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the
metal-type transporters. This family includes
transporters involved in the uptake of various metallic
cations such as iron, manganese, and zinc. The ATPases
of this group of transporters are very similar to
members of iron-siderophore uptake family suggesting
that they share a common ancestor. The best
characterized metal-type ABC transporters are the
YfeABCD system of Y. pestis, the SitABCD system of
Salmonella enterica serovar Typhimurium, and the SitABCD
transporter of Shigella flexneri. Moreover other
uncharacterized homologs of these metal-type
transporters are mainly found in pathogens like
Haemophilus or enteroinvasive E. coli isolates.
Length = 213
Score = 120 bits (303), Expect = 4e-31
Identities = 65/223 (29%), Positives = 115/223 (51%), Gaps = 19/223 (8%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
++++ SY H ++ ++S ++PGE + +VG +GAGKST+ +L G I + G
Sbjct: 2 VEDLTVSYGG-HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFG 60
Query: 422 QNISNVSQESLREQIGMVTQDTSLLHR---SIRDNILYGRPDASECELFNAAKCAEADIF 478
+ + R++IG V Q S+ S+RD +L G LF A+
Sbjct: 61 KPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGL--YGHKGLFRRLSKADKAKV 113
Query: 479 IKSLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
++L + G D +GE LSGGQ+QR+ +AR ++++ +LLLDE + +D + +
Sbjct: 114 DEAL-ERVGLSELADRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQ 168
Query: 538 IAIQKSLYNL-MKGKTVIAIAHRLSTISA-MDRLIVLDNGCVA 578
I + L L +G T++ + H L + DR+++L+ VA
Sbjct: 169 EDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVVA 211
>gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell
division and chromosome partitioning].
Length = 223
Score = 118 bits (299), Expect = 1e-30
Identities = 70/239 (29%), Positives = 113/239 (47%), Gaps = 34/239 (14%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F+NVS +Y + ++S I GE + L G SGAGKST+ L+ G+IL+
Sbjct: 2 IRFENVSKAYPGGREALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILV 61
Query: 420 DGQNISNVSQES---LREQIGMVTQDTSLL-HRSIRDNILY-----GRPDASECELFNAA 470
+G ++S + LR QIG+V QD LL R++ +N+ G+P
Sbjct: 62 NGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPRE------IR 115
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+ + + L + A +LSGG++QR+AIAR I+ +LL DE T
Sbjct: 116 RRVSEVLDLVGLKHK-------ARA--LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTG 166
Query: 531 ALDSEAEIAIQKSLYNLMK-----GKTVIAIAHRLSTISAMD-RLIVLDNGCVAEEGSH 583
LD + + + L + G TV+ H L ++ M R++ L++G + + S
Sbjct: 167 NLDPD----LSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221
>gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the
osmoprotectant proline/glycine betaine uptake system.
This family comprises the glycine betaine/L-proline ATP
binding subunit in bacteria and its equivalents in
archaea. This transport system belong to the larger
ATP-Binding Cassette (ABC) transporter superfamily. The
characteristic feature of these transporters is the
obligatory coupling of ATP hydrolysis to substrate
translocation. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 269
Score = 120 bits (303), Expect = 2e-30
Identities = 72/223 (32%), Positives = 121/223 (54%), Gaps = 24/223 (10%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE- 434
+N++SL ++ GE ++G SG+GKST+ + R + G++LIDGQ+I+ +S++ LRE
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELREL 99
Query: 435 ---QIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
+I MV Q +LL HR++ +N+ +G + AEA + G +G
Sbjct: 100 RRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEA-------LELVGLEG 152
Query: 491 Y-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
+ + E LSGG +QR+ +AR + + ILL+DEA SALD +Q L L
Sbjct: 153 WEHKYPDE----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQA 208
Query: 550 --GKTVIAIAHRLSTISAM---DRLIVLDNGCVAEEGSHLDLL 587
KT++ I H L A+ DR+ ++ +G + + G+ ++L
Sbjct: 209 ELQKTIVFITHDL--DEALRLGDRIAIMKDGRLVQVGTPEEIL 249
>gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit;
Provisional.
Length = 343
Score = 122 bits (308), Expect = 2e-30
Identities = 90/245 (36%), Positives = 134/245 (54%), Gaps = 44/245 (17%)
Query: 360 IFFKNVSFSYDQKHLIIN---NLSLTIQPGEKIGLVGRSGAGKST---INNLLLRFYDIK 413
I KN+S + Q I+ N+SL I GE G++G SGAGKST NLL R
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLER---PT 58
Query: 414 YGEILIDGQNISNVSQESLRE---QIGMVTQDTSLLH-RSIRDNILYGRPDASECELFNA 469
G +L+DGQ+++ +S++ LR+ QIGM+ Q +LL R++ DN+ A EL
Sbjct: 59 SGRVLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNV------ALPLELAGT 112
Query: 470 AKCAEADIFIK--------SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP 521
K A+I + L+D+ R Y A +LSGGQ+QR+AIAR L + P
Sbjct: 113 PK---AEIKARVTELLELVGLSDKADR--YPA-------QLSGGQKQRVAIARA-LASNP 159
Query: 522 -ILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCV 577
+LL DEATSALD +I + L ++ + G T++ I H + + + DR+ V+D G +
Sbjct: 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRL 219
Query: 578 AEEGS 582
E+G+
Sbjct: 220 VEQGT 224
>gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport
system, ATPase component [Amino acid transport and
metabolism / Inorganic ion transport and metabolism].
Length = 316
Score = 120 bits (304), Expect = 3e-30
Identities = 70/245 (28%), Positives = 116/245 (47%), Gaps = 29/245 (11%)
Query: 364 NVSFS-YDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-----IKYGEI 417
+VSF ++ +S ++ GE +G+VG SG+GKS + ++ I GEI
Sbjct: 8 SVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEI 67
Query: 418 LIDGQNISNVSQESLRE----QIGMVTQD--TSL-----LHRSIRDNILYGRPDASECEL 466
L DG+++ ++S++ LR+ +I M+ QD TSL + I + + S+ E
Sbjct: 68 LFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEA 127
Query: 467 FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
A + I + ++ E LSGG RQR+ IA + N +L+ D
Sbjct: 128 KERAIELLELVGIPDP-----ERRLKSYPHE----LSGGMRQRVMIAMALALNPKLLIAD 178
Query: 527 EATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSH 583
E T+ALD + I L L + G +I I H L ++ + DR+ V+ G + EEG
Sbjct: 179 EPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPV 238
Query: 584 LDLLK 588
++ K
Sbjct: 239 EEIFK 243
>gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the
binding protein-dependent phosphonate transport system.
Phosphonates are a class of organophosphorus compounds
characterized by a chemically stable
carbon-to-phosphorus (C-P) bond. Phosphonates are
widespread among naturally occurring compounds in all
kingdoms of wildlife, but only prokaryotic
microorganisms are able to cleave this bond. Certain
bacteria such as E. coli can use alkylphosphonates as a
phosphorus source. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 241
Score = 118 bits (298), Expect = 4e-30
Identities = 74/242 (30%), Positives = 121/242 (50%), Gaps = 33/242 (13%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +N+S +Y + ++SL+I PGE + L+G SGAGKST+ L + G +LI
Sbjct: 1 IEVENLSKTYPNGKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLI 60
Query: 420 DGQNISNVSQESLRE---QIGMVTQDTSLLHR-SIRDNILYGRPDA-----------SEC 464
DG +I+ + ++LR+ QIGM+ Q +L+ R S+ +N+L GR +
Sbjct: 61 DGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKE 120
Query: 465 ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524
E A E R G + +LSGGQ+QR+AIAR +++ ++L
Sbjct: 121 EKQRALAALE-------------RVGLLDKAYQRADQLSGGQQQRVAIARALMQQPKLIL 167
Query: 525 LDEATSALD---SEAEIAIQKSLYNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEE 580
DE ++LD S + + K + N +G TVI H++ DR++ L +G + +
Sbjct: 168 ADEPVASLDPASSRQVMDLLKRI-NREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFD 226
Query: 581 GS 582
G
Sbjct: 227 GP 228
>gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 118 bits (298), Expect = 6e-30
Identities = 76/235 (32%), Positives = 130/235 (55%), Gaps = 17/235 (7%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I +NVSFSY ++ + N+S I GE + ++G +G+GKSTI+ +L + GEI
Sbjct: 8 IKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIK 67
Query: 419 IDGQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAAKCAEAD 476
IDG IS + + +R++IG++ Q D + ++ D+I +G E + K
Sbjct: 68 IDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGL----ENKKVPPKK----- 118
Query: 477 IFIKSLTDEHGRK-GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+K + D+ +K G + ++ + LSGGQ+QR+AIA V+ N I++ DE+TS LD +
Sbjct: 119 --MKDIIDDLAKKVGMEDYLDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDPK 176
Query: 536 AEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLK 588
+ I+K + +L K KT+I+I H + D++IV G + +G ++L
Sbjct: 177 GKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILN 231
>gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the
histidine and glutamine transporters. HisP and GlnQ are
the ATP-binding components of the bacterial periplasmic
histidine and glutamine permeases, respectively.
Histidine permease is a multi-subunit complex containing
the HisQ and HisM integral membrane subunits and two
copies of HisP. HisP has properties intermediate between
those of integral and peripheral membrane proteins and
is accessible from both sides of the membrane,
presumably by its interaction with HisQ and HisM. The
two HisP subunits form a homodimer within the complex.
The domain structure of the amino acid uptake systems is
typical for prokaryotic extracellular solute binding
protein-dependent uptake systems. All of the amino acid
uptake systems also have at least one, and in a few
cases, two extracellular solute binding proteins located
in the periplasm of Gram-negative bacteria, or attached
to the cell membrane of Gram-positive bacteria. The
best-studied member of the PAAT (polar amino acid
transport) family is the HisJQMP system of S.
typhimurium, where HisJ is the extracellular solute
binding proteins and HisP is the ABC protein.
Length = 213
Score = 116 bits (292), Expect = 1e-29
Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 45/236 (19%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYDIKYG 415
I KN+ S+ H ++ + LT++ GE + ++G SG+GKST IN L + G
Sbjct: 1 IEIKNLHKSFGDFH-VLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLL----EEPDSG 55
Query: 416 EILIDGQNISNVSQE--SLREQIGMVTQDTSLL-HRSIRDNILY------GRPDASECEL 466
I+IDG +++ + LR+++GMV Q +L H ++ +NI G
Sbjct: 56 TIIIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSK------ 109
Query: 467 FNAAKCAEADIFIKSLTDEHGRK-----GYDAHVGEHGIKLSGGQRQRIAIARVILKNAP 521
AEA +E + G + +LSGGQ+QR+AIAR + N
Sbjct: 110 ------AEA--------EERALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPK 155
Query: 522 ILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTI-SAMDRLIVLDNG 575
++L DE TSALD E + + +L + G T++ + H + DR+I +D+G
Sbjct: 156 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDG 211
>gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components
[Carbohydrate transport and metabolism].
Length = 338
Score = 119 bits (301), Expect = 1e-29
Identities = 71/247 (28%), Positives = 124/247 (50%), Gaps = 47/247 (19%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKYGEI 417
KNV S+ ++ +++L I+ GE + L+G SG GKST LLR + GEI
Sbjct: 6 LKNVRKSFG-SFEVLKDVNLDIEDGEFVVLLGPSGCGKST----LLRMIAGLEEPTSGEI 60
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECE--LFNAA 470
LIDG++++++ E + I MV Q+ +L H ++ +NI +G +E + + A
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
K + + + LSGGQRQR+A+AR +++ + LLDE S
Sbjct: 119 KLLGLEHLLNRKPLQ----------------LSGGQRQRVALARALVRKPKVFLLDEPLS 162
Query: 531 ALDSE------AEIA-IQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
LD++ +EI + + L G T I + H + DR++V+++G + + G+
Sbjct: 163 NLDAKLRVLMRSEIKKLHERL-----GTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGT 217
Query: 583 HLDLLKK 589
L+L ++
Sbjct: 218 PLELYER 224
>gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding
protein. Phosphonates are a class of
phosphorus-containing organic compound with a stable
direct C-P bond rather than a C-O-P linkage. A number of
bacterial species have operons, typically about 14 genes
in size, with genes for ATP-dependent transport of
phosphonates, degradation, and regulation of the
expression of the system. Members of this protein family
are the ATP-binding cassette component of tripartite ABC
transporters of phosphonates [Transport and binding
proteins, Anions].
Length = 243
Score = 117 bits (294), Expect = 1e-29
Identities = 67/232 (28%), Positives = 119/232 (51%), Gaps = 13/232 (5%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ +N+S Y + N++L I PGE + ++G SGAGKST+ + R + G IL+
Sbjct: 2 LEVENLSKVYPNGKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILL 61
Query: 420 DGQNISNVSQESLRE---QIGMVTQDTSLLHR-SIRDNILYGRPDASEC--ELFNAAKCA 473
+G +I+ + + LR+ +IGM+ Q +L+ R ++ +N+L+GR L
Sbjct: 62 EGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEE 121
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
+ + + +L R G + +LSGGQ+QR+AIAR + + ++L DE ++LD
Sbjct: 122 DKERALSALE----RVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLD 177
Query: 534 SEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
+ + L + K G TVI H++ DR++ L G + +G+
Sbjct: 178 PKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGA 229
>gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport
system involved in resistant to organic solvents. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 235
Score = 116 bits (293), Expect = 1e-29
Identities = 67/238 (28%), Positives = 114/238 (47%), Gaps = 33/238 (13%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I + ++ S+ + ++ + L ++ GE + ++G SG+GKST+ L++ GE+LI
Sbjct: 1 IELRGLTKSFGGRT-VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLI 59
Query: 420 DGQNISNVSQESLRE---QIGMVTQD----TSLLHRSIRDNILY-----GRPDASECELF 467
DG++IS +S+ L ++GM+ Q SL ++ +N+ + R E
Sbjct: 60 DGEDISGLSEAELYRLRRRMGMLFQSGALFDSL---TVFENVAFPLREHTRLSEEEIREI 116
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
K L D + E LSGG ++R+A+AR + + +LL DE
Sbjct: 117 VLEKLEAV-----GLRGAE-----DLYPAE----LSGGMKKRVALARALALDPELLLYDE 162
Query: 528 ATSALDSEAEIAIQKSLYNL--MKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
T+ LD A I + +L G T I + H L T A+ DR+ VL +G + EG+
Sbjct: 163 PTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGT 220
>gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component
[Coenzyme metabolism].
Length = 231
Score = 116 bits (292), Expect = 1e-29
Identities = 77/241 (31%), Positives = 121/241 (50%), Gaps = 37/241 (15%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ +V FSY + LT+ GE + ++G SGAGKST+ NL+ F GEILI
Sbjct: 2 LALDDVRFSYGHLPM---RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILI 58
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG-----RPDASECELFNAAKCA 473
+G + + S + R + M+ Q+ +L H ++ NI G + +A + E AA
Sbjct: 59 NGVDHTA-SPPAERP-VSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQ 116
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
G G+ + +LSGGQRQR+A+AR +++ PILLLDE SALD
Sbjct: 117 V------------GLAGFLKRLPG---ELSGGQRQRVALARCLVREQPILLLDEPFSALD 161
Query: 534 SEAEIAIQKSLYNLM------KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDL 586
A++ + L+ + T++ + H + DR++ LDNG +A +GS +L
Sbjct: 162 P----ALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQEL 217
Query: 587 L 587
L
Sbjct: 218 L 218
>gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 253
Score = 116 bits (293), Expect = 2e-29
Identities = 72/239 (30%), Positives = 113/239 (47%), Gaps = 29/239 (12%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKY 414
I ++++ Y KH + +++L I + L+G SG GKST+ L R D +
Sbjct: 7 AIEVRDLNLYYGDKH-ALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARV 65
Query: 415 -GEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAK 471
GE+L+DG+NI V LR ++GMV Q + SI DN+ YG L
Sbjct: 66 EGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYG------LRLHGIKD 119
Query: 472 CAEADIFIKSLT-----DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
+I SL DE + + + + LSGGQ+QR+ IAR + +LL+D
Sbjct: 120 KELDEIVESSLKKAALWDEVKDR-----LHKSALGLSGGQQQRLCIARALAVKPEVLLMD 174
Query: 527 EATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRL---STISAMDRLIVLDNGCVAEEGS 582
E TSALD + + I++ + L K T++ + H + + +S D G + E G
Sbjct: 175 EPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVS--DYTAFFYLGELVEFGP 231
>gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component
[Inorganic ion transport and metabolism].
Length = 254
Score = 116 bits (292), Expect = 3e-29
Identities = 70/223 (31%), Positives = 113/223 (50%), Gaps = 25/223 (11%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +N++ SY + ++ ++SL+++ GE L+G +GAGKST+ +L GEI I
Sbjct: 5 IEVENLTVSYGNRP-VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKI 63
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLH---RSIRDNILYGRPDASECELFNAAKCAEAD 476
G+ V + R +IG V Q +S+ +++D +L GR K E
Sbjct: 64 FGKP---VRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEK- 119
Query: 477 IFIKSLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ + G + D +GE LSGGQ+QR+ +AR + +N +LLLDE + +D
Sbjct: 120 --VDEALERVGMEDLRDRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVA 173
Query: 536 AEIAIQKSLYNLMK-----GKTVIAIAHRLSTISAM-DRLIVL 572
+ I Y+L+K GKTV+ + H L + A DR+I L
Sbjct: 174 GQKEI----YDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL 212
>gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine
transporter. PotA is an ABC-type transporter and the
ATPase component of the
spermidine/putrescine-preferential uptake system
consisting of PotA, -B, -C, and -D. PotA has two domains
with the N-terminal domain containing the ATPase
activity and the residues required for homodimerization
with PotA and heterdimerization with PotB. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 232
Score = 115 bits (291), Expect = 3e-29
Identities = 70/235 (29%), Positives = 119/235 (50%), Gaps = 25/235 (10%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +NVS Y ++ +SL I+ GE L+G SG GK+T+ L+ F GEIL+
Sbjct: 1 IELENVSKFYGGFV-ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILL 59
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECELFNAAKCAE 474
DG++I+N+ + + V Q+ +L H ++ +NI +G + +E + + AE
Sbjct: 60 DGKDITNLPPH--KRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIK----ERVAE 113
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
A ++ + + + +LSGGQ+QR+AIAR ++ +LLLDE ALD
Sbjct: 114 ALDLVQ--LEGYANRKPS--------QLSGGQQQRVAIARALVNEPKVLLLDEPLGALDL 163
Query: 535 EAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDL 586
+ +Q L L K G T + + H M DR+ V++ G + + G+ ++
Sbjct: 164 KLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEI 218
>gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase
protein; Reviewed.
Length = 375
Score = 118 bits (299), Expect = 4e-29
Identities = 71/228 (31%), Positives = 118/228 (51%), Gaps = 19/228 (8%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ + +S S+D K +I+NL LTI GE + L+G SG GK+T+ L+ F G I++
Sbjct: 15 VELRGISKSFDGKE-VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIML 73
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIF 478
DGQ+I++V E + V Q +L H ++ +N+ +G K A+
Sbjct: 74 DGQDITHVPAE--NRHVNTVFQSYALFPHMTVFENVAFG---------LRMQKTPAAE-- 120
Query: 479 IKSLTDEHGRKGYDAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
I E R + LSGGQ+QR+AIAR ++ +LLLDE+ SALD +
Sbjct: 121 ITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALDYKLR 180
Query: 538 IAIQKSLYNLMK--GKTVIAIAH-RLSTISAMDRLIVLDNGCVAEEGS 582
+Q L L + G T + + H + ++ DR++V+ +G + ++G+
Sbjct: 181 KQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGT 228
>gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter
subfamily G of the ATP-binding cassette superfamily.
ABCG transporters are involved in eye pigment (EP)
precursor transport, regulation of lipid-trafficking
mechanisms, and pleiotropic drug resistance (DR). DR is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. Compared to other members of the
ABC transporter subfamilies, the ABCG transporter family
is composed of proteins that have an ATP-binding
cassette domain at the N-terminus and a TM
(transmembrane) domain at the C-terminus.
Length = 194
Score = 113 bits (284), Expect = 1e-28
Identities = 67/233 (28%), Positives = 109/233 (46%), Gaps = 53/233 (22%)
Query: 360 IFFKNVSFSYDQKHL-----IINNLSLTIQPGEKIGLVGRSGAGKSTINNLL--LRFYDI 412
+ F+N++ + ++ N+S +PGE ++G SGAGKST+ N L R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 413 KYGEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAK 471
GE+LI+G+ + + S R+ IG V QD L ++R+ +++ AAK
Sbjct: 64 VSGEVLINGRPLD---KRSFRKIIGYVPQDDILHPTLTVRETLMF------------AAK 108
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
+G LSGG+R+R++IA ++ N +L LDE TS
Sbjct: 109 L----------------RG-----------LSGGERKRVSIALELVSNPSLLFLDEPTSG 141
Query: 532 LDSEAEIAIQKSLYNLMK-GKTVIAIAHRLST--ISAMDRLIVLDNGCVAEEG 581
LDS + + + L L G+T+I H+ S+ D+L++L G V G
Sbjct: 142 LDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
>gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding
protein. This model represents the ATP-binding protein
of a family of ABC transporters for inorganic phosphate.
In the model species Escherichia coli, a constitutive
transporter for inorganic phosphate, with low affinity,
is also present. The high affinity transporter that
includes this polypeptide is induced when extracellular
phosphate concentrations are low. The proteins most
similar to the members of this family but not included
appear to be amino acid transporters [Transport and
binding proteins, Anions].
Length = 247
Score = 114 bits (287), Expect = 1e-28
Identities = 75/233 (32%), Positives = 114/233 (48%), Gaps = 24/233 (10%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKY-GEI 417
+N++ Y +K + N++L I + L+G SG GKST+ L R D ++ G++
Sbjct: 5 ENLNLFYGEKE-ALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKV 63
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
L DGQ+I + LR ++GMV Q + SI DNI YG P + K
Sbjct: 64 LFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYG-PRLHGIK----DKKELD 118
Query: 476 DIFIKSLT-----DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+I +SL DE + +D+ + LSGGQ+QR+ IAR + +LLLDE TS
Sbjct: 119 EIVEESLKKAALWDEVKDRLHDS-----ALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 531 ALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGS 582
ALD A I++ + L K T++ + H + DR +G + E G
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGP 226
>gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding
cassette component of cobalt transport system. Domain
II of the ABC component of a cobalt transport family
found in bacteria, archaea, and eukaryota. The
transition metal cobalt is an essential component of
many enzymes and must be transported into cells in
appropriate amounts when needed. The CbiMNQO family ABC
transport system is involved in cobalt transport in
association with the cobalamin (vitamin B12)
biosynthetic pathways. Most cobalt (Cbi) transport
systems possess a separate CbiN component, the
cobalt-binding periplasmic protein, and they are encoded
by the conserved gene cluster cbiMNQO. Both the CbiM and
CbiQ proteins are integral cytoplasmic membrane
proteins, and the CbiO protein has the linker peptide
and the Walker A and B motifs commonly found in the
ATPase components of the ABC-type transport systems.
Length = 205
Score = 112 bits (282), Expect = 2e-28
Identities = 70/217 (32%), Positives = 111/217 (51%), Gaps = 21/217 (9%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+N+SFSY + I+++LSL + GE I L G++GAGK+T+ +L G IL++G+
Sbjct: 3 ENISFSYKKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGK 62
Query: 423 NISNVSQESLREQIGMVTQDTS--LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
I + R+ IG V QD L S+R+ +L G + A+ D+ +
Sbjct: 63 PIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGN--EQAETVLKDLDLY 117
Query: 481 SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAI 540
+L + H LSGGQ+QR+AIA +L +L+ DE TS LD + +
Sbjct: 118 ALKERHPL------------SLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERV 165
Query: 541 QKSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVLDNG 575
+ + L GK VI I H ++ + DR+++L NG
Sbjct: 166 GELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANG 202
>gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component
[Carbohydrate transport and metabolism].
Length = 500
Score = 117 bits (296), Expect = 5e-28
Identities = 71/217 (32%), Positives = 111/217 (51%), Gaps = 26/217 (11%)
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLL---LRFYDIKYGEILIDGQNISNVS-QESL 432
+ +SLT++PGE L+G +GAGKST+ +L GEILIDG+ ++ S +++L
Sbjct: 25 DGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDS---GEILIDGKPVAFSSPRDAL 81
Query: 433 REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKC-AEADIFIKSLTDEHGRKG 490
I V Q+ SL+ + S+ +NI GR L + A + L +
Sbjct: 82 AAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID--- 138
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-- 548
D VG+ LS QRQ + IAR + +A +L+LDE T+AL + E L++L+
Sbjct: 139 PDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAAL-TVKETER---LFDLIRR 190
Query: 549 ---KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
+G +I I+HRL + + DR+ VL +G V
Sbjct: 191 LKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTR 227
Score = 79.1 bits (196), Expect = 2e-15
Identities = 61/222 (27%), Positives = 109/222 (49%), Gaps = 31/222 (13%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESLRE 434
+ ++S T++ GE +G+ G GAG++ + L GEIL+DG+ + S +++++
Sbjct: 275 VRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKA 334
Query: 435 QIGMVTQDTS----LLHRSIRDNI-LYGRPDASECELFNAAKCAE-ADIFIKSLTDEHGR 488
I V +D +L SI +NI L S L + K A+ +I+ L
Sbjct: 335 GIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRL----RI 390
Query: 489 KGYDAH--VGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD--SEAEIAIQKSL 544
K +G LSGG +Q++ +AR + + +L+LDE T +D ++AEI
Sbjct: 391 KTPSPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDVGAKAEI------ 440
Query: 545 YNLM-----KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEE 580
Y L+ +GK ++ I+ L + + DR++V+ G + E
Sbjct: 441 YRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGE 482
>gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding
subunit. This model describes the glycine
betaine/L-proline ATP binding subunit in bacteria and
its equivalents in archaea. This transport system belong
to the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Functionally, this transport system is involved
in osmoregulation. Under conditions of stress, the
organism recruits these transport system to accumulate
glycine betaine and other solutes which offer
osmo-protection. It has been demonstrated that glycine
betaine uptake is accompanied by symport with sodium
ions. The locus has been named variously as proU or
opuA. A gene library from L.lactis functionally
complements an E.coli proU mutant. The comlementing
locus is similar to a opuA locus in B.sutlis. This
clarifies the differences in nomenclature [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 363
Score = 114 bits (288), Expect = 8e-28
Identities = 73/221 (33%), Positives = 110/221 (49%), Gaps = 18/221 (8%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE- 434
+N+ L I GE ++G SG+GKST +L R + G+I IDG+NI S LRE
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 435 ---QIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
+IGMV Q +L H +I N G E + + E + + L G +
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLG----PELLGWPEQERKEKALELLKLV---GLEE 121
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK- 549
Y H +LSGG +QR+ +AR + ILL+DEA SALD ++Q L L
Sbjct: 122 Y-EHRYPD--ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQAT 178
Query: 550 -GKTVIAIAHRL-STISAMDRLIVLDNGCVAEEGSHLDLLK 588
KT++ I H L I DR++++ G + + G+ ++L+
Sbjct: 179 LQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILR 219
>gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system,
ATPase component [Amino acid transport and metabolism].
Length = 386
Score = 114 bits (287), Expect = 1e-27
Identities = 75/225 (33%), Positives = 122/225 (54%), Gaps = 24/225 (10%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE- 434
+N+ SL ++ GE ++G SG+GKST+ LL R + GEIL+DG++I+ +S LRE
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 435 ---QIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
+I MV Q +LL HR++ +N+ +G E+ K + +++L + G +G
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFG------LEVQGVPKAEREERALEAL-ELVGLEG 156
Query: 491 YDAH-VGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
Y E LSGG +QR+ +AR + + ILL+DEA SALD +Q L L
Sbjct: 157 YADKYPNE----LSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQA 212
Query: 550 --GKTVIAIAHRLSTISAM---DRLIVLDNGCVAEEGSHLDLLKK 589
KT++ I H L A+ DR+ ++ +G + + G+ ++L
Sbjct: 213 KLKKTIVFITHDLD--EALRIGDRIAIMKDGEIVQVGTPEEILLN 255
>gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of
CFTR,subfamily C. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 275
Score = 111 bits (278), Expect = 3e-27
Identities = 69/247 (27%), Positives = 134/247 (54%), Gaps = 10/247 (4%)
Query: 358 GKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
G++ K+++ Y + + ++ N+S +I PG+++GL+GR+G+GKST+ + LR + + G+
Sbjct: 1 GQMTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-GD 59
Query: 417 ILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI-LYGRPDASECELFNAAKCAEA 475
I IDG + ++V + R+ G++ Q + + R N+ YG+ S+ E++ A+
Sbjct: 60 IQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGK--WSDEEIWKVAE---- 113
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
++ +KS+ ++ + D + + G LS G +Q + +AR +L A ILLLDE ++ LD
Sbjct: 114 EVGLKSVIEQFPGQ-LDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPI 172
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSR 595
I+K+L TVI HR+ + R +V++ V + S LL + + +
Sbjct: 173 TYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKSHFKQ 232
Query: 596 LWRHQNK 602
++
Sbjct: 233 AISPSDR 239
>gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE. This
model describes FtsE, a member of the ABC transporter
ATP-binding protein family. This protein, and its
permease partner FtsX, localize to the division site. In
a number of species, the ftsEX gene pair is located next
to FtsY, the signal recognition particle-docking protein
[Cellular processes, Cell division].
Length = 214
Score = 109 bits (274), Expect = 3e-27
Identities = 78/235 (33%), Positives = 115/235 (48%), Gaps = 42/235 (17%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F NVS +Y ++++SL I+ GE + L G SGAGK+T+ LL G++ I
Sbjct: 2 IEFHNVSKAYPGGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRI 61
Query: 420 DGQNISNVSQE---SLREQIGMVTQDTSLL-HRSIRDNI-----LYGRPDASECELFNAA 470
G++++ + LR +IG+V QD LL R++ +N+ + G+
Sbjct: 62 AGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKK----------- 110
Query: 471 KCAEADIFIKSLTDEHGRKGYDA--HVG-EHGIK-----LSGGQRQRIAIARVILKNAPI 522
E R+ A VG EH LSGG++QR+AIAR I+ + P+
Sbjct: 111 ------------EREIQRRVGAALRQVGLEHKADAFPEQLSGGEQQRVAIARAIVNSPPL 158
Query: 523 LLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAMD-RLIVLDNG 575
LL DE T LD + I L L K G TVI H LS + + R+I+LD+G
Sbjct: 159 LLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDG 213
>gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC
transporter, lactococcin 972 group. A gene pair with a
fairly wide distribution consists of a polypeptide
related to the lactococcin 972 (see TIGR01653) and
multiple-membrane-spanning putative immunity protein
(see TIGR01654). This model represents a small clade
within the ABC transporters that regularly are found
adjacent to these bacteriocin system gene pairs and are
likely serve as export proteins [Cellular processes,
Toxin production and resistance, Transport and binding
proteins, Unknown substrate].
Length = 206
Score = 108 bits (273), Expect = 3e-27
Identities = 65/224 (29%), Positives = 112/224 (50%), Gaps = 33/224 (14%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
KN+S + K I+++L+LTI+ G+ ++G SG+GKST+ N++ G++ ++GQ
Sbjct: 2 KNISKKFGDKV-ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQ 60
Query: 423 NISNV----SQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADI 477
+ + + RE++G + Q+ +L+ + ++ +N+ G
Sbjct: 61 ETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGL------------------K 102
Query: 478 FIKSLTDEHGRKGYDA--HVG-EHGIK-----LSGGQRQRIAIARVILKNAPILLLDEAT 529
+ K E K +A VG +K LSGG++QR+A+AR ILK P++L DE T
Sbjct: 103 YKKLSKKEKREKKKEALEKVGLNLKLKQKIYELSGGEQQRVALARAILKPPPLILADEPT 162
Query: 530 SALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAMDRLIVL 572
+LD + + L L GKT+I + H DR+I L
Sbjct: 163 GSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVAKQADRVIEL 206
>gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 241
Score = 109 bits (275), Expect = 4e-27
Identities = 72/206 (34%), Positives = 105/206 (50%), Gaps = 20/206 (9%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+I FK VS+S K I+ ++S+ + G +VG SGAGKST+ L+ R D G IL
Sbjct: 3 EIEFKEVSYSSFGKE-ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
IDG +I + LR +IGMV Q L +++DNI YG + K + + +
Sbjct: 62 IDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYG-------PMLKGEKNVDVEYY 114
Query: 479 IK--SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ L E+ + LSGG+ QR++IAR + N +LLLDE TSALD +
Sbjct: 115 LSIVGLNKEYATRDVK--------NLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
Query: 537 EIAIQKSLYNLMK--GKTVIAIAHRL 560
I++ + L TVI I H +
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNM 192
>gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 110 bits (276), Expect = 6e-27
Identities = 69/231 (29%), Positives = 119/231 (51%), Gaps = 15/231 (6%)
Query: 356 TNGKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
I +++SF Y D + ++S ++ GE + +VG +G+GKST+ LL +
Sbjct: 2 KEEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEA 61
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAAKC 472
G I + G +S + +R Q+GMV Q D + +++D++ +G L N
Sbjct: 62 GTITVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFG--------LENIG-- 111
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
+ ++ + + G + + +LSGGQ+QR+AIA V+ I++LDEATS L
Sbjct: 112 VPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSML 171
Query: 533 DSEAEIAIQKSLYNL--MKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581
D + +++ L KG TV++I H L + DR+IV++ G + EEG
Sbjct: 172 DPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEG 222
>gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit,
PQQ-dependent alcohol dehydrogenase system. Members of
this protein family are the ATP-binding subunit of an
ABC transporter system that is associated with PQQ
biosynthesis and PQQ-dependent alcohol dehydrogenases.
While this family shows homology to several efflux ABC
transporter subunits, the presence of a periplasmic
substrate-binding protein and association with systems
for catabolism of alcohols suggests a role in import
rather than detoxification [Transport and binding
proteins, Carbohydrates, organic alcohols, and acids].
Length = 236
Score = 108 bits (273), Expect = 6e-27
Identities = 74/237 (31%), Positives = 117/237 (49%), Gaps = 25/237 (10%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+SF Y + ++++S T++PG + L+G +GAGKST+ +LL R Y + G+I + G
Sbjct: 5 AGLSFRYGARR-ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGH 63
Query: 423 NISNVSQESLREQIGMVTQDTSL-LHRSIRDNILY-----GRPDASECELFNAAKCAEAD 476
++ + +L ++G+V Q +L L S+R N+ Y G A A
Sbjct: 64 DLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRYHAALHGLSRA------EARARIAEL 116
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ L + K V E L+GG R+R+ IAR +L +LLLDE T LD +
Sbjct: 117 LARLGLAERADDK-----VRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPAS 167
Query: 537 EIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNG 591
AI + L + G +V+ H + I A DRL+VL G V +G+ +L G
Sbjct: 168 RAAITAHVRALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGATG 224
>gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the
cell division transporter. FtsE is a hydrophilic
nucleotide-binding protein that binds FtsX to form a
heterodimeric ATP-binding cassette (ABC)-type
transporter that associates with the bacterial inner
membrane. The FtsE/X transporter is thought to be
involved in cell division and is important for assembly
or stability of the septal ring.
Length = 214
Score = 107 bits (269), Expect = 1e-26
Identities = 69/226 (30%), Positives = 112/226 (49%), Gaps = 24/226 (10%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F NV+ +Y ++ ++++I GE + LVG SGAGKST+ L+ + G I +
Sbjct: 1 IEFINVTKTYPNGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRV 60
Query: 420 DGQNISNVSQES---LREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEA 475
+GQ++S++ + LR +IG+V QD LL R++ +N+ + A E E
Sbjct: 61 NGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAF----ALEV---TGVPPREI 113
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ + + G + +LSGG++QR+AIAR I+ + IL+ DE T LD +
Sbjct: 114 RKRVPAALELVGLSHKHRALPA---ELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPD 170
Query: 536 AEIAIQKSLYNLMK-----GKTVIAIAHRLSTISAMD-RLIVLDNG 575
I NL+K G TV+ H + R+I L+ G
Sbjct: 171 TTWEI----MNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERG 212
>gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system,
duplicated ATPase component [General function prediction
only].
Length = 534
Score = 113 bits (285), Expect = 1e-26
Identities = 79/234 (33%), Positives = 123/234 (52%), Gaps = 34/234 (14%)
Query: 367 FSYDQKHLI-INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425
HL ++ +SLT++ G+ +GLVG SG+GKST+ LLR + GEI DGQ+I
Sbjct: 293 LRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351
Query: 426 NVSQES---LREQIGMVTQD--TSLLHR-SIRDNILYG----RPDASECELFNAAKCAEA 475
+S++ LR ++ +V QD SL R ++ I G P S AE
Sbjct: 352 GLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSA---------AER 402
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
D + +E G + H + SGGQRQRIAIAR ++ ++LLDE TSALD
Sbjct: 403 DQRVIEALEEVGLDPATRNRYPH--EFSGGQRQRIAIARALILKPELILLDEPTSALD-- 458
Query: 536 AEIAIQKSLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
++Q + +L++ G + + I+H L+ + A+ R+IV+ +G + E+G
Sbjct: 459 --RSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGP 510
Score = 94.3 bits (235), Expect = 2e-20
Identities = 76/260 (29%), Positives = 112/260 (43%), Gaps = 58/260 (22%)
Query: 363 KNVSFSYDQKH---LIINNLSLTIQPGEKIGLVGRSGAGKS----TINNLLLRFYDIKY- 414
+N+S ++ Q+ + +S I+ GE + LVG SG+GKS +I LL
Sbjct: 10 RNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPS 69
Query: 415 GEILIDGQNISNVSQESLR----EQIGMVTQD--TSL---------------LHRSIRDN 453
G IL DG+++ S+ LR +IGM+ Q+ TSL LHR +
Sbjct: 70 GSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLS-- 127
Query: 454 ILYGRPDASE--CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511
R A EL E + + + E LSGGQRQR+
Sbjct: 128 ----RAAARARALELLELVGIPEPEKRLDAYPHE----------------LSGGQRQRVM 167
Query: 512 IARVILKNAP-ILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-D 567
IA + L N P +L+ DE T+ALD + I L L G ++ I H L + D
Sbjct: 168 IA-MALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFAD 226
Query: 568 RLIVLDNGCVAEEGSHLDLL 587
R+ V+ +G + E G+ L
Sbjct: 227 RVYVMQHGEIVETGTTETLF 246
>gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport
system, ATPase component. The biological function of
this family is not well characterized, but display ABC
domains similar to members of ABCA subfamily. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 106 bits (267), Expect = 3e-26
Identities = 67/231 (29%), Positives = 118/231 (51%), Gaps = 29/231 (12%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ +N++ Y +K ++ +SLT+ PG GL+G +GAGK+T+ +L G I I
Sbjct: 1 LQLENLTKRYGKKR-ALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRI 58
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLHR-SIRD-----NILYGRPDASECELFNAAKCA 473
DGQ++ Q+ LR +IG + Q+ + ++R+ L G P E + A
Sbjct: 59 DGQDVLKQPQK-LRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPS-KEVK-------A 109
Query: 474 EADIFIK--SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
D ++ +L D +K +G LSGG R+R+ IA+ ++ + IL++DE T+
Sbjct: 110 RVDEVLELVNLGDRAKKK-----IG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAG 160
Query: 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
LD E I + L L + + VI H + + ++ +++ VL+ G + EG
Sbjct: 161 LDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
>gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 269
Score = 107 bits (269), Expect = 4e-26
Identities = 77/243 (31%), Positives = 125/243 (51%), Gaps = 31/243 (12%)
Query: 360 IFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I FKNVSF Y + ++S I G+ +VG +G+GKSTI L++ +K GEI
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 419 IDGQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAAKCAE-- 474
+ Q I++ + E LR+ IG+V Q D + ++ ++ +G L N A +
Sbjct: 68 YNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFG--------LENHAVPYDEM 119
Query: 475 ADIFIKSLTDEH--GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
++L R Y+ + LSGGQ+QR+AIA V+ N +++LDEATS L
Sbjct: 120 HRRVSEALKQVDMLERADYEPN------ALSGGQKQRVAIAGVLALNPSVIILDEATSML 173
Query: 533 DSEAEIAIQKSLYNLM------KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL 586
D +A +++L +L+ T+I+I H LS D +IV++ G V +EG+ ++
Sbjct: 174 DPDA----RQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEI 229
Query: 587 LKK 589
Sbjct: 230 FDH 232
>gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems,
ATPase components [General function prediction only].
Length = 501
Score = 111 bits (280), Expect = 5e-26
Identities = 66/211 (31%), Positives = 114/211 (54%), Gaps = 21/211 (9%)
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS-NVSQESLREQ 435
+++SL+++ GE L+G +GAGKST+ +L Y GEI +DG+ + ++++R
Sbjct: 21 DDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80
Query: 436 IGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK-GYDA 493
IGMV Q L+ ++ +NI+ G + L + + IK L++ +G DA
Sbjct: 81 IGMVHQHFMLVPTLTVAENIILGLEPSKG-GLIDRRQARAR---IKELSERYGLPVDPDA 136
Query: 494 HVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK---- 549
V + LS G++QR+ I + + + A +L+LDE T+ L + E L+ +++
Sbjct: 137 KVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVL-TPQEA---DELFEILRRLAA 188
Query: 550 -GKTVIAIAHRLSTISAM-DRLIVLDNGCVA 578
GKT+I I H+L + A+ DR+ VL G V
Sbjct: 189 EGKTIIFITHKLKEVMAIADRVTVLRRGKVV 219
Score = 54.5 bits (132), Expect = 9e-08
Identities = 51/232 (21%), Positives = 96/232 (41%), Gaps = 32/232 (13%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+++S + + ++S ++ GE +G+ G +G G+S + + G IL++G+
Sbjct: 261 EDLSVKDRRGVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGK 320
Query: 423 NISNVSQESLREQIGM--VTQDTS----LLHRSIRDNIL-----------YGRPDASECE 465
++ R ++G+ V +D +L S+ +N++ G D
Sbjct: 321 DVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIR 380
Query: 466 LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL 525
F E D+ S LSGG +Q++ +AR + + +L+
Sbjct: 381 KFARELIEEFDVRAPSPDAPARS-------------LSGGNQQKLILARELARRPDLLIA 427
Query: 526 DEATSALDSEAEIAIQKSLYNL-MKGKTVIAIAHRLSTISAM-DRLIVLDNG 575
+ T LD A I + L L GK V+ I+ L I + DR+ V+ G
Sbjct: 428 AQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479
>gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein;
Reviewed.
Length = 240
Score = 106 bits (266), Expect = 5e-26
Identities = 74/237 (31%), Positives = 121/237 (51%), Gaps = 23/237 (9%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYDIKYG 415
I FKNVS + +++N+ L I GE + ++G SG+GKST IN L +I G
Sbjct: 2 IEFKNVSKHFGP-TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKL----EEITSG 56
Query: 416 EILIDGQNI--SNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKC 472
++++DG + V + +R++ GMV Q L H + +N+++G A
Sbjct: 57 DLIVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRV------RGASK 110
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
EA+ + L + G + +LSGGQ+QR+AIAR + ++L DE TSAL
Sbjct: 111 EEAEKQARELL---AKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSAL 167
Query: 533 DSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLL 587
D E + K + +L +G T++ + H + + RLI +D G +AE+G L+
Sbjct: 168 DPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLI 224
>gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose
transporter, MalK. ATP binding cassette (ABC) proteins
function from bacteria to human, mediating the
translocation of substances into and out of cells or
organelles. ABC transporters contain two
transmembrane-spanning domains (TMDs) or subunits and
two nucleotide binding domains (NBDs) or subunits that
couple transport to the hydrolysis of ATP. In the
maltose transport system, the periplasmic maltose
binding protein (MBP) stimulates the ATPase activity of
the membrane-associated transporter, which consists of
two transmembrane subunits, MalF and MalG, and two
copies of the ATP binding subunit, MalK, and becomes
tightly bound to the transporter in the catalytic
transition state, ensuring that maltose is passed to the
transporter as ATP is hydrolyzed.
Length = 213
Score = 105 bits (264), Expect = 7e-26
Identities = 62/229 (27%), Positives = 113/229 (49%), Gaps = 29/229 (12%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+NV+ + +++L+L I GE + L+G SG GK+T ++ + G I I G+
Sbjct: 4 ENVTKRFGNVT-ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGR 62
Query: 423 NISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG------RPDASECELFNAAKCAEA 475
+++++ + I MV Q+ +L H ++ DNI +G D + + A+ +
Sbjct: 63 DVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQ- 119
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
I+ L D ++ LSGGQRQR+A+ R I++ + L+DE S LD++
Sbjct: 120 ---IEHLLDRKPKQ------------LSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 536 AEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
+ ++ L L + G T I + H M DR+ V+++G + + G
Sbjct: 165 LRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213
>gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 105 bits (264), Expect = 1e-25
Identities = 70/233 (30%), Positives = 118/233 (50%), Gaps = 30/233 (12%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+N++ Y I+N+LSL++ G+ L+G +G GKST+ R + G + + +
Sbjct: 6 ENLTVGY-GTKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDK 64
Query: 423 NISNVSQESLREQIGMVTQDTSLLHR-----SIRDNILYGR-PDASECELFNAAKCAEAD 476
IS +S L ++ ++ Q H ++R+ + YGR P S L+ + + D
Sbjct: 65 PISMLSSRQLARRLALLPQ----HHLTPEGITVRELVAYGRSPWLS---LW--GRLSAED 115
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGI-KLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ ++ + H+ + + LSGGQRQR +A V+ ++ P++LLDE T+ LD
Sbjct: 116 ---NARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD-- 170
Query: 536 AEIAIQKSLYNLM-----KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
I Q L LM +GKTV+ + H L+ S D L+VL NG V +G+
Sbjct: 171 --INHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGT 221
>gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to
organic solvents, ATPase component [Secondary
metabolites biosynthesis, transport, and catabolism].
Length = 263
Score = 105 bits (265), Expect = 2e-25
Identities = 78/251 (31%), Positives = 127/251 (50%), Gaps = 44/251 (17%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
I + V+ S+ +I++ + L + GE + ++G SG+GKST+ L+L GEIL
Sbjct: 8 LIEVRGVTKSFGD-RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 419 IDGQNISNVSQE---SLREQIGMVTQD----TSLLHRSIRDNILYGRPDASECELFNAAK 471
IDG++I +S+E +R+++G++ Q +SL ++ +N+ + L K
Sbjct: 67 IDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSL---TVFENVAF--------PLREHTK 115
Query: 472 CAEADIFIKSLTDEH----GRKGYDAHV--GEHGIKLSGGQRQRIAIARVILKNAPILLL 525
E+ I+ L G +G A + E LSGG R+R+A+AR I + +L L
Sbjct: 116 LPES--LIRELVLMKLELVGLRGAAADLYPSE----LSGGMRKRVALARAIALDPELLFL 169
Query: 526 DEATSALD--SEAEIA-----IQKSLYNLMKGKTVIAIAHRLSTI-SAMDRLIVLDNGCV 577
DE TS LD S I + +L G TVI + H L ++ + DR+ VL +G V
Sbjct: 170 DEPTSGLDPISAGVIDELIRELNDAL-----GLTVIMVTHDLDSLLTIADRVAVLADGKV 224
Query: 578 AEEGSHLDLLK 588
EG+ +LL
Sbjct: 225 IAEGTPEELLA 235
>gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain
of the thiamine transport system. Part of the
binding-protein-dependent transport system tbpA-thiPQ
for thiamine and TPP. Probably responsible for the
translocation of thiamine across the membrane. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds,
like sugars, ions, peptides, and more complex organic
molecules. The nucleotide binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 211
Score = 103 bits (259), Expect = 2e-25
Identities = 65/225 (28%), Positives = 114/225 (50%), Gaps = 27/225 (12%)
Query: 365 VSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424
+ FSY ++ + + LT GE +VG SG+GKST+ NL+ F + G +LI+G ++
Sbjct: 6 IRFSYGEQPM---HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDV 62
Query: 425 SNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLT 483
+ + + M+ Q+ +L H ++ N+ G AE I+
Sbjct: 63 T--AAPPADRPVSMLFQENNLFAHLTVEQNVGLGLSP-------GLKLTAEDRQAIEVAL 113
Query: 484 DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS 543
G G + + +LSGG+RQR+A+ARV++++ P+LLLDE +ALD A++
Sbjct: 114 ARVGLAGLEKRLPG---ELSGGERQRVALARVLVRDKPVLLLDEPFAALDP----ALRAE 166
Query: 544 LYNLM------KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
+ +L+ TV+ + H+ + R++ LDNG +A +G
Sbjct: 167 MLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
>gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 279
Score = 105 bits (265), Expect = 2e-25
Identities = 69/224 (30%), Positives = 119/224 (53%), Gaps = 16/224 (7%)
Query: 360 IFFKNVSFSY--DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
I KN++F Y DQ+ +N++S ++ GE + ++G +G+GKST L+ + + G+I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 418 LIDGQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
+IDG ++ + +R +IGMV Q D + ++ D++ +G L N K
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFG--------LEN--KGIPH 114
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ + + + G +LSGGQ+QR+AIA + I++LDEATS LD E
Sbjct: 115 EEMKERVNEALELVGMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPE 174
Query: 536 AEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCV 577
+ + K++ + TVI+I H L ++ DR++V+ NG V
Sbjct: 175 GRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQV 218
>gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein;
Provisional.
Length = 252
Score = 103 bits (258), Expect = 9e-25
Identities = 67/209 (32%), Positives = 108/209 (51%), Gaps = 13/209 (6%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----YGEI 417
++S Y++K +N++SL P E L+G SG+GKST+ + R D+ G I
Sbjct: 9 SDLSVYYNKKK-ALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSI 67
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
+ +G NI LR++IGMV Q + SI +N++YG + + E
Sbjct: 68 VYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEK 127
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ S+ DE + +D+ +G LSGGQ+QR+ IARV+ + I+LLDE TSALD
Sbjct: 128 SLKGASIWDEVKDRLHDSALG-----LSGGQQQRVCIARVLATSPKIILLDEPTSALDPI 182
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTIS 564
+ I+++L L T++ + + S
Sbjct: 183 SAGKIEETLLGLKDDYTMLLVTRSMQQAS 211
>gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 102 bits (255), Expect = 2e-24
Identities = 76/237 (32%), Positives = 113/237 (47%), Gaps = 27/237 (11%)
Query: 361 FFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYG 415
KN++ Y K I+ +++L I E +G SG GKST R D G
Sbjct: 7 SVKNLNLWYGSKQ-ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65
Query: 416 EILIDGQNISNVSQES--LREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCA 473
E+ IDG ++ +V LR ++GMV Q + +SI DN+ YG +L AK
Sbjct: 66 ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGP------KLHGLAKNK 119
Query: 474 EA--DIFIKSLT-----DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
+ +I KSLT +E G + D+ +LSGGQ+QR+ IAR I +LL+D
Sbjct: 120 KKLDEIVEKSLTSVGLWEELGDRLKDS-----AFELSGGQQQRLCIARAIAVKPTMLLMD 174
Query: 527 EATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
E SALD A I+ + L K T+I + H + + DR+ +G + E +
Sbjct: 175 EPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
>gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of
branched-chain amino acid transporter. LivF (TM1139) is
part of the LIV-I bacterial ABC-type two-component
transport system that imports neutral, branched-chain
amino acids. The E. coli branched-chain amino acid
transporter comprises a heterodimer of ABC transporters
(LivF and LivG), a heterodimer of six-helix TM domains
(LivM and LivH), and one of two alternative soluble
periplasmic substrate binding proteins (LivK or LivJ).
ABC transporters are a large family of proteins involved
in the transport of a wide variety of different
compounds, like sugars, ions, peptides, and more complex
organic molecules.
Length = 222
Score = 101 bits (254), Expect = 2e-24
Identities = 63/243 (25%), Positives = 109/243 (44%), Gaps = 44/243 (18%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+N++ Y + I+ +SLT+ GE + L+GR+GAGK+T+ ++ + G I DG+
Sbjct: 4 ENLNAGYGKSQ-ILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGR 62
Query: 423 NISNV-SQESLREQIGMVTQDTSLLHR-SIRDNIL---YGRPDASE-------CELFNAA 470
+I+ + E R IG V + + ++ +N+L Y R A ELF
Sbjct: 63 DITGLPPHERARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFPR- 121
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
L + + LSGG++Q +AIAR ++ +LLLDE +
Sbjct: 122 -----------LKERRKQLAGT---------LSGGEQQMLAIARALMSRPKLLLLDEPSE 161
Query: 531 ALDSEAEIAIQKSLYNLMK-----GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHL 584
L I + ++ ++ G T++ + + DR VL+ G V EG+
Sbjct: 162 GL----APKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAA 217
Query: 585 DLL 587
+LL
Sbjct: 218 ELL 220
>gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI;
Provisional.
Length = 340
Score = 104 bits (261), Expect = 2e-24
Identities = 78/236 (33%), Positives = 121/236 (51%), Gaps = 21/236 (8%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I VS SY K ++N LS T+ GE GL+G +GAGKSTI ++L G+I +
Sbjct: 42 IDLAGVSKSYGDK-AVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITV 100
Query: 420 DGQNISNVSQESLREQIGMVTQ-DTSLLHRSIRDNIL-YGRPDASECELFNAAKCAEADI 477
G + ++ R +IG+V Q D L ++R+N+L +GR + E +
Sbjct: 101 LGVPVPARAR-LARARIGVVPQFDNLDLEFTVRENLLVFGR--------YFGMSTREIEA 151
Query: 478 FIKSLTDEHGR--KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
I SL E R DA V + LSGG ++R+ +AR ++ + +L+LDE T+ LD
Sbjct: 152 VIPSLL-EFARLESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPH 206
Query: 536 AEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKK 589
A I + L +L+ +GKT++ H + + DRL VL+ G EG L+ +
Sbjct: 207 ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262
>gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 102 bits (256), Expect = 2e-24
Identities = 71/231 (30%), Positives = 123/231 (53%), Gaps = 22/231 (9%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +NVS+SY + N++L I+ GE IG++G++G+GKST+ L + G++L+
Sbjct: 2 IRLENVSYSYPDGTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLV 61
Query: 420 DGQNISNVSQ-ESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAAKCAEAD 476
G + + S+ + +R+ +G+V Q +T + R++ +++ +G + C
Sbjct: 62 SGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENL----------CLPP- 110
Query: 477 IFIKSLTD----EHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
I I+ D E G + Y + LSGGQ Q +A+A ++ L+ DE TS L
Sbjct: 111 IEIRKRVDRALAEIGLEKYRHRSPK---TLSGGQGQCVALAGILTMEPECLIFDEVTSML 167
Query: 533 DSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582
D ++ IA+ + + L KGKT++ I H L + DR+IV+D G + EG
Sbjct: 168 DPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGE 218
>gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 223
Score = 101 bits (252), Expect = 3e-24
Identities = 63/214 (29%), Positives = 107/214 (50%), Gaps = 26/214 (12%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE 434
I+NN+SL+++ GE I + G SG GKST+ ++ G +L +G+++S + E+ R+
Sbjct: 18 ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQ 77
Query: 435 QIGMVTQDTSLLHRSIRDNILY------GRPDASECELFNAAKCAEADIFIKSLTDEHGR 488
Q+ Q +L ++ DN+++ RPD + A I K++T+
Sbjct: 78 QVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITE---- 133
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
LSGG++QRIA+ R + ILLLDE TSALD + I++ ++ +
Sbjct: 134 -------------LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKRNIEEMIHRYV 180
Query: 549 KGK--TVIAIAH-RLSTISAMDRLIVLDNGCVAE 579
+ + V+ I H + I D++I L G E
Sbjct: 181 REQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214
>gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 102 bits (254), Expect = 3e-24
Identities = 67/210 (31%), Positives = 108/210 (51%), Gaps = 15/210 (7%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----K 413
KI ++V+F Y H + +S+ I+ + +G SG GKST L R D+
Sbjct: 3 KIDARDVNFWYGDFH-ALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRL 61
Query: 414 YGEILIDGQNISNVSQE--SLREQIGMVTQDTSLLHRSIRDNILYG-RPDASECELFNAA 470
GEI IDG+NI + + LR+ +GMV Q + +SI +N+ YG R + + F
Sbjct: 62 EGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQ 121
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+ E + +L DE K + E LSGGQ+QR+ IAR + + +LL+DE S
Sbjct: 122 RVEET-LKGAALWDEVKDK-----LKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPAS 175
Query: 531 ALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
ALD + +++ ++ L K T++ + H +
Sbjct: 176 ALDPISTAKVEELIHELKKDYTIVIVTHNM 205
>gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component
[Energy production and conversion / Inorganic ion
transport and metabolism].
Length = 245
Score = 101 bits (254), Expect = 3e-24
Identities = 69/233 (29%), Positives = 109/233 (46%), Gaps = 14/233 (6%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+++ SY K + ++S + GE GL+G +GAGK+T+ ++ G++ IDG
Sbjct: 5 TDLTKSYGSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGV 64
Query: 423 NISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKS 481
+ +R +IG++ + L R + R+N+ Y A L A K
Sbjct: 65 DTVRDP-SFVRRKIGVLFGERGLYARLTARENLKYF---ARLNGLSRKEIKARIAELSKR 120
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
L D VGE S G +Q++AIAR ++ + IL+LDE TS LD
Sbjct: 121 LQLLEYL---DRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKFH 173
Query: 542 KSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNGL 592
+ L +G+ VI +H + + A+ DR+IVL G V EGS L + L
Sbjct: 174 DFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDARTVL 226
>gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 102 bits (255), Expect = 3e-24
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 30/239 (12%)
Query: 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423
N+S+S + L+ + +SL ++PGE + ++G +GAGKST+ L GE+ ++G
Sbjct: 6 NLSYSLAGRRLL-DGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVP 64
Query: 424 ISNVSQESLREQIGMVTQDTSL-LHRSIRDNILYGR-PDASECELFNAAKCAEADIFIKS 481
+++ E L ++ Q++SL ++++ + GR P S E + A +
Sbjct: 65 LNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ---ALA 121
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARV------ILKNAPILLLDEATSALDSE 535
TD G G D LSGG++QR+ +ARV + + L LDE TSALD
Sbjct: 122 ATDLSGLAGRDYRT------LSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALD-- 173
Query: 536 AEIAIQKSLYNLMK-----GKTVIAIAHRLSTISAM--DRLIVLDNGCVAEEGSHLDLL 587
IA Q L + G V+A+ H L+ ++A DR+++L G V GS D+L
Sbjct: 174 --IAHQHHTLRLARQLAREGGAVLAVLHDLN-LAAQYADRIVLLHQGRVIASGSPQDVL 229
>gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component
[Inorganic ion transport and metabolism].
Length = 259
Score = 101 bits (253), Expect = 5e-24
Identities = 69/217 (31%), Positives = 107/217 (49%), Gaps = 20/217 (9%)
Query: 364 NVSFSYDQKHLII-NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
++S SY+ K ++SLTI GE + ++G SG GK+T+ NL+ F G I ++G+
Sbjct: 8 HLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR 67
Query: 423 NISNVSQESLREQIGMVTQDTSLLH-RSIRDNILYGRPDASECELFNAAKCAEADIFIKS 481
I E G+V Q+ +LL ++ DN+ +G +L K +I +
Sbjct: 68 RIEGPGAER-----GVVFQNEALLPWLNVIDNVAFG------LQLRGIEKAQRREIAHQM 116
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
L G +G + LSGG RQR+ IAR + +LLLDE ALD+ +Q
Sbjct: 117 LA-LVGLEGAEHKYIWQ---LSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQ 172
Query: 542 KSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNG 575
+ L +L + GK V+ I H + + RL+VL G
Sbjct: 173 ELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPG 209
>gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein;
Provisional.
Length = 272
Score = 101 bits (254), Expect = 5e-24
Identities = 75/248 (30%), Positives = 113/248 (45%), Gaps = 46/248 (18%)
Query: 351 KRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410
L + +N++ Y K + ++S+ I +G SG GKST+ R
Sbjct: 17 LNLSDEQTALEVRNLNLFYGDKQ-ALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMN 75
Query: 411 D------IKYGEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYG----- 457
D I+ GEI +DGQNI V LR ++GMV Q + +SI +N++YG
Sbjct: 76 DLVDNCRIE-GEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQG 134
Query: 458 ------RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511
+A E L AA L DE + ++ G LSGGQ+QR+
Sbjct: 135 INNRRVLDEAVERSLRGAA-----------LWDEVKDRLHENAFG-----LSGGQQQRLV 178
Query: 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAH------RLSTISA 565
IAR I +LLLDE TSALD + + I++ + L T++ + H R+S +A
Sbjct: 179 IARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTA 238
Query: 566 ---MDRLI 570
M +L+
Sbjct: 239 FMYMGKLV 246
>gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 282
Score = 101 bits (254), Expect = 5e-24
Identities = 77/241 (31%), Positives = 128/241 (53%), Gaps = 18/241 (7%)
Query: 357 NGKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNL---LLRFYDI 412
+ + FK+VSF+Y D K +N++S +I G L+G +G+GKSTI+ L LL D
Sbjct: 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDN 62
Query: 413 KYGEILIDGQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAA 470
+I +DG ++ + +RE++G+V Q D + ++ D++ +G L N A
Sbjct: 63 PNSKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFG--------LENRA 114
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
IK + D G ++ LSGGQ+QR+AIA ++ I++LDE+TS
Sbjct: 115 VPRPE--MIKIVRDVLADVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTS 172
Query: 531 ALDSEAEIAIQKSLYNLMKGK--TVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLK 588
LD + I K + L K TVI+I H + + D+++VLD+G + +GS +++
Sbjct: 173 MLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232
Query: 589 K 589
K
Sbjct: 233 K 233
>gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding
protein; Provisional.
Length = 369
Score = 103 bits (258), Expect = 8e-24
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 33/237 (13%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+NV+ +Y I +++L I GE + VG SG GKST+ ++ DI G++ I
Sbjct: 6 LRNVTKAYGDVV-ISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGE 64
Query: 422 QNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
+ +++V +GMV Q +L H S+ +N+ +G +L A K E I
Sbjct: 65 KRMNDV--PPAERGVGMVFQSYALYPHLSVAENMSFG------LKLAGAKK-EE----IN 111
Query: 481 SLTDEHGRKGYDAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLDEATSALDS----- 534
++ AH+ + K LSGGQRQR+AI R ++ + LLDE S LD+
Sbjct: 112 QRVNQVAEVLQLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 171
Query: 535 -EAEIA-IQKSLYNLMKGKTVIAIAHRLSTISAM---DRLIVLDNGCVAEEGSHLDL 586
EI+ + K L G+T+I + H + AM D+++VLD G VA+ G L+L
Sbjct: 172 MRIEISRLHKRL-----GRTMIYVTH--DQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
>gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 99.6 bits (248), Expect = 2e-23
Identities = 72/221 (32%), Positives = 111/221 (50%), Gaps = 23/221 (10%)
Query: 356 TNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-- 413
K+ KN++ Y +K +N+++L I + L+G SG GKST L R D+
Sbjct: 1 MKIKMESKNLNLWYGEKQ-ALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISN 59
Query: 414 ---YGEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGR-----PDASE 463
GE+L+DG+NI +V LR+++GMV Q + SI DN+ YG D E
Sbjct: 60 VKIEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKE 119
Query: 464 CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523
+ K E + +L DE + + +KLSGGQ+QR+ IAR I ++
Sbjct: 120 LD-----KIVEWALKKAALWDE-----VKDDLKKSALKLSGGQQQRLCIARTIAVKPDVI 169
Query: 524 LLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS 564
L+DE TSALD + + I+ + L K T++ + H + S
Sbjct: 170 LMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQAS 210
>gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding
subunit; Provisional.
Length = 400
Score = 102 bits (255), Expect = 2e-23
Identities = 74/222 (33%), Positives = 117/222 (52%), Gaps = 18/222 (8%)
Query: 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLR 433
L + + SL I+ GE ++G SG+GKST+ LL R + G++LIDG +I+ +S LR
Sbjct: 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELR 101
Query: 434 E----QIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGR 488
E +I MV Q +L+ H ++ DN +G A + K+L D +
Sbjct: 102 EVRRKKIAMVFQSFALMPHMTVLDNTAFG---------MELAGINAEERREKAL-DALRQ 151
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
G + + + +LSGG RQR+ +AR + N ILL+DEA SALD +Q L L
Sbjct: 152 VGLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQ 211
Query: 549 KG--KTVIAIAHRL-STISAMDRLIVLDNGCVAEEGSHLDLL 587
+T++ I+H L + DR+ ++ NG V + G+ ++L
Sbjct: 212 AKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEIL 253
>gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed.
Length = 402
Score = 101 bits (254), Expect = 4e-23
Identities = 66/222 (29%), Positives = 112/222 (50%), Gaps = 21/222 (9%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKYGEILIDGQNISNVSQE 430
+++ + L+++ G +GLVG +GAGK+T LLR + G +L+ G ++ +S
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTT----LLRAINGTLTPTAGTVLVAGDDVEALSAR 73
Query: 431 SLREQIGMVTQDTSL-LHRSIRDNILYGR-PDASECELFNAAKCAEADIFIKSLTDEHGR 488
+ ++ V QDTSL +R + GR P S + + A + ++ R
Sbjct: 74 AASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAME-------R 126
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
G LSGG+RQR+ +AR + + P+LLLDE T++LD ++ + + L+
Sbjct: 127 TGVAQFADRPVTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLV 186
Query: 549 K-GKTVIAIAHRLSTISAM--DRLIVLDNGCVAEEGSHLDLL 587
GKT +A H L ++A D L++L +G V G D+L
Sbjct: 187 DDGKTAVAAIHDLD-LAARYCDELVLLADGRVRAAGPPADVL 227
>gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein
YejF; Provisional.
Length = 529
Score = 102 bits (256), Expect = 6e-23
Identities = 76/227 (33%), Positives = 118/227 (51%), Gaps = 33/227 (14%)
Query: 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL 432
++++ N+S T++PGE +GLVG SG+GKST LLR + + GEI DGQ + N+++ L
Sbjct: 299 NVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQL 357
Query: 433 ---REQIGMVTQD--TSLLHR-SIRDNILYG----RPDASECELFNAAKCAEADIFIKSL 482
R +I +V QD +SL R ++ I G +P S + ++ +
Sbjct: 358 LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEVGL--- 414
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
D R Y A + SGGQRQRIAIAR ++ +++LDE TS+LD +Q
Sbjct: 415 -DPETRHRYPA-------EFSGGQRQRIAIARALILKPSLIILDEPTSSLDK----TVQA 462
Query: 543 SLYNLMKGK------TVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
+ L+K + I+H L + A+ ++IVL G V E+G
Sbjct: 463 QILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQGD 509
Score = 77.8 bits (192), Expect = 4e-15
Identities = 67/251 (26%), Positives = 115/251 (45%), Gaps = 57/251 (22%)
Query: 370 DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD---IKY--GEILIDGQNI 424
++N++SL I+ GE + LVG SG+GKS +LR + Y G+I G+++
Sbjct: 19 QTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESL 78
Query: 425 SNVSQESLR----EQIGMVTQD--TSL---------------LHRSIRDNILYGRPDASE 463
+ S+++LR +I M+ Q+ SL LHR +R +A+
Sbjct: 79 LHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRR-------EAAR 131
Query: 464 CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523
E I + D G + + ++ +LSGG+RQR+ IA +L +L
Sbjct: 132 GE-------------ILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELL 178
Query: 524 LLDEATSALDSEAEIAIQKSLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGC 576
+ DE T+ALD +++Q + L++ ++ I H LS + + DR+ V+ NG
Sbjct: 179 IADEPTTALD----VSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGR 234
Query: 577 VAEEGSHLDLL 587
E+ L
Sbjct: 235 CVEQNRAATLF 245
>gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein.
This model describes the energy-transducing ATPase
subunit ThiQ of the ThiBPQ thiamine (and thiamine
pyrophosphate) ABC transporter in several
Proteobacteria. This protein is found so far only in
Proteobacteria, and is found in complete genomes only if
the ThiB and ThiP subunits are also found [Transport and
binding proteins, Other].
Length = 213
Score = 96.5 bits (240), Expect = 8e-23
Identities = 65/232 (28%), Positives = 114/232 (49%), Gaps = 31/232 (13%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ V + Y +HL + L + GE + ++G SGAGKST+ NL+ F + G I +
Sbjct: 1 LALDKVRYEY--EHLPME-FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKV 57
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG-----RPDASECELFNAAKCA 473
+ Q+ + ++ + + M+ Q+ +L H ++R NI G + +A + E A
Sbjct: 58 NDQSHTGLA--PYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQ- 114
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
+ G ++ +LSGGQRQR+A+AR +++ PILLLDE SALD
Sbjct: 115 --------------QVGIADYLDRLPEQLSGGQRQRVALARCLVRPNPILLLDEPFSALD 160
Query: 534 S---EAEIAIQKSLYNLMKGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEG 581
E +A+ K L + + +T++ + H LS + ++ V+ G +
Sbjct: 161 PLLREEMLALVKQLCS-ERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211
>gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor
regulator (CFTR). The model describes the cystis
fibrosis transmembrane conductor regulator (CFTR) in
eukaryotes. The principal role of this protein is
chloride ion conductance. The protein is predicted to
consist of 12 transmembrane domains. Mutations or lesions
in the genetic loci have been linked to the aetiology of
asthma, bronchiectasis, chronic obstructive pulmonary
disease etc. Disease-causing mutations have been studied
by 36Cl efflux assays in vitro cell cultures and
electrophysiology, all of which point to the impairment
of chloride channel stability and not the biosynthetic
processing per se [Transport and binding proteins,
Anions].
Length = 1490
Score = 103 bits (257), Expect = 1e-22
Identities = 108/500 (21%), Positives = 226/500 (45%), Gaps = 60/500 (12%)
Query: 137 AGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIY 196
AGRI + + I D+ + + +T+ ++ + ++ Y+ + +I
Sbjct: 981 AGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVLQPYIFIAAIPVAVIFIM 1040
Query: 197 TLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYAR--------- 247
YF+ + + ++ ARS + + + + T++ F GR++ +
Sbjct: 1041 LRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAF---GRQSYFETLFHKALNLH 1097
Query: 248 ----FAMIDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAA 303
F + L+ + QMR+ F + + + +GT G G V
Sbjct: 1098 TANWFLYLSTLR--WFQMRIDIIF-VFFFIAVTFIAIGTNQ----------DGEGEVGII 1144
Query: 304 TAMSLRLNGISHW----------VMWEIAALFESIGTIQD--------GMNMLSKKYKIV 345
+++ + W +M ++ +F+ I Q+ G LS ++
Sbjct: 1145 LTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVL-VI 1203
Query: 346 DNYNAKRLVVTNGKIFFKNVSFSYDQK-HLIINNLSLTIQPGEKIGLVGRSGAGKSTINN 404
+N +A++ + G++ + ++ Y + ++ +LS +++ G+++GL+GR+G+GKST+ +
Sbjct: 1204 ENPHAQKCWPSGGQMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLS 1263
Query: 405 LLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDA--S 462
LLR + GEI IDG + ++V+ ++ R+ G++ Q + + R N+ P S
Sbjct: 1264 ALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNL---DPYEQWS 1319
Query: 463 ECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI 522
+ E++ A+ ++ +KS+ ++ K D + + G LS G +Q + +AR IL A I
Sbjct: 1320 DEEIWKVAE----EVGLKSVIEQFPDK-LDFVLVDGGYVLSNGHKQLMCLARSILSKAKI 1374
Query: 523 LLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582
LLLDE ++ LD I+K+L TVI HR+ + + +V++ V + S
Sbjct: 1375 LLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSSVKQYDS 1434
Query: 583 HLDLLKKNGLYSRLWRHQNK 602
LL + L+ + ++
Sbjct: 1435 IQKLLNETSLFKQAMSAADR 1454
Score = 78.8 bits (194), Expect = 4e-15
Identities = 67/243 (27%), Positives = 112/243 (46%), Gaps = 41/243 (16%)
Query: 343 KIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTI 402
KI N A++ + +FF N S ++ N+S ++ G+ + + G +G+GKS++
Sbjct: 412 KIKQNNKARKQPNGDDGLFFSNFSLYVTP---VLKNISFKLEKGQLLAVAGSTGSGKSSL 468
Query: 403 NNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG----- 457
+++ GE+ I + + S Q + T I+DNI++G
Sbjct: 469 LMMIM-------GELEPSEGKIKHSGRISFSPQTSWIMPGT------IKDNIIFGLSYDE 515
Query: 458 ---RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514
C+L E DI + D+ +GE GI LSGGQR RI++AR
Sbjct: 516 YRYTSVIKACQL-------EEDIALFPEKDK-------TVLGEGGITLSGGQRARISLAR 561
Query: 515 VILKNAPILLLDEATSALD--SEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVL 572
+ K+A + LLD + LD +E EI + L LM KT I + +L + D++++L
Sbjct: 562 AVYKDADLYLLDSPFTHLDVVTEKEI-FESCLCKLMSNKTRILVTSKLEHLKKADKILLL 620
Query: 573 DNG 575
G
Sbjct: 621 HEG 623
>gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase
component [Inorganic ion transport and metabolism].
Length = 345
Score = 99.3 bits (248), Expect = 1e-22
Identities = 71/236 (30%), Positives = 110/236 (46%), Gaps = 63/236 (26%)
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI------KYGEILIDGQNISNVSQE 430
+++SL I+ GE + L+G SGAGKST LLR I G I ++G+ + +VS
Sbjct: 19 DDISLDIKSGELVALLGPSGAGKST----LLRI--IAGLETPDAGRIRLNGRVLFDVSNL 72
Query: 431 SLRE-QIGMVTQDTSLL-HRSIRDNILYG------RPDASE--------CELFNAAKCAE 474
++R+ ++G V Q +L H ++ DNI +G RP +E L A+
Sbjct: 73 AVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLAD 132
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
Y A LSGGQRQR+A+AR + +LLLDE ALD+
Sbjct: 133 R---------------YPAQ-------LSGGQRQRVALARALAVEPKVLLLDEPFGALDA 170
Query: 535 EAEIAIQKSLYNLMK--GKTVIAIAH------RLSTISAMDRLIVLDNGCVAEEGS 582
+ +++ L L G T + + H L+ DR++VL+ G + + G
Sbjct: 171 KVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELA-----DRVVVLNQGRIEQVGP 221
>gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein;
Provisional.
Length = 260
Score = 97.4 bits (243), Expect = 1e-22
Identities = 73/217 (33%), Positives = 107/217 (49%), Gaps = 27/217 (12%)
Query: 356 TNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY- 414
KI +N++F Y + H + N++L I + +G SG GKST+ R Y++ Y
Sbjct: 10 APSKIQVRNLNFYYGKFH-ALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYEL-YP 67
Query: 415 -----GEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELF 467
GEIL+DG+NI LR ++GMV Q + SI DNI +G LF
Sbjct: 68 EQRAEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFG------VRLF 121
Query: 468 NAAKCAEADIFIK------SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP 521
AE D ++ +L +E K + + G LSGGQ+QR+ IAR I
Sbjct: 122 EKLSRAEMDERVEWALTKAALWNEVKDK-----LHQSGYSLSGGQQQRLCIARGIAIRPE 176
Query: 522 ILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAH 558
+LLLDE SALD + I++ + L + TV+ + H
Sbjct: 177 VLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTH 213
>gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the
molybdate transporter. Archaeal protein closely related
to ModC. ModC is an ABC-type transporter and the ATPase
component of a molybdate transport system that also
includes the periplasmic binding protein ModA and the
membrane protein ModB. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 235
Score = 96.3 bits (240), Expect = 2e-22
Identities = 67/234 (28%), Positives = 114/234 (48%), Gaps = 28/234 (11%)
Query: 366 SFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425
+ S D K + N+SL ++ G+ ++G +G+GKS + + F G+IL++G++I+
Sbjct: 5 NLSKDWKEFKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDIT 64
Query: 426 NVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAE--ADIFIKSL 482
N+ E + I V Q+ +L H ++ NI YG + K E + I L
Sbjct: 65 NLPPE--KRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHL 122
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
+ LSGG++QR+AIAR ++ N ILLLDE SALD + ++
Sbjct: 123 LNRKPET------------LSGGEQQRVAIARALVVNPKILLLDEPFSALD----VRTKE 166
Query: 543 SLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKK 589
L +K G TV+ + H A+ D++ ++ NG + + G ++ KK
Sbjct: 167 KLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220
>gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit;
Provisional.
Length = 232
Score = 96.2 bits (240), Expect = 2e-22
Identities = 68/251 (27%), Positives = 118/251 (47%), Gaps = 47/251 (18%)
Query: 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423
++++ Y + LT++ GE++ ++G SGAGKST+ NL+ F G + ++GQ+
Sbjct: 6 DITWLYHHLPM---RFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQD 62
Query: 424 ISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG-----RPDASECELFNAAKCAEADI 477
+ R + M+ Q+ +L H ++ NI G + +A++ E
Sbjct: 63 HTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQRE------------ 108
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE-- 535
L + G + + +LSGGQRQR+A+AR +++ PILLLDE SALD
Sbjct: 109 ---KLHAIARQMGIEDLLARLPGQLSGGQRQRVALARCLVREQPILLLDEPFSALDPALR 165
Query: 536 -------AEIAIQKSLYNLMKGKTVIAIAHRLSTISAM---DRLIVLDNGCVAEEGSHLD 585
+++ ++ L LM ++H L A R +V+ +G +A +G +
Sbjct: 166 QEMLTLVSQVCQERQLTLLM-------VSHSLE--DAARIAPRSLVVADGRIAWDGPTDE 216
Query: 586 LLKKNGLYSRL 596
LL S L
Sbjct: 217 LLSGKASASAL 227
>gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 258
Score = 96.4 bits (241), Expect = 3e-22
Identities = 71/249 (28%), Positives = 119/249 (47%), Gaps = 59/249 (23%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKYGEIL 418
+N+S + +++++SLT++PGE + ++G +GAGKST LLR GE+
Sbjct: 6 RNLSVRLGGRT-LLDDVSLTLRPGEVVAILGPNGAGKST----LLRALSGELSPDSGEVR 60
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSL-----------LHRSIRDNILYGRPDASECELF 467
++G+ +++ S L + ++ Q +SL + R+ +G A + L
Sbjct: 61 LNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAP-----HGLSRAEDDALV 115
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL------KNAP 521
AA A+ D L GR Y LSGG++QR+ +ARV+
Sbjct: 116 AAA-LAQVD-----LAHLAGRD-YPQ--------LSGGEQQRVQLARVLAQLWEPDGPPR 160
Query: 522 ILLLDEATSALDSEAEIAIQKSLYNLMK------GKTVIAIAHRLSTISAM--DRLIVLD 573
LLLDE TSALD +A Q + L + G VI + H L+ ++A DR+++L
Sbjct: 161 WLLLDEPTSALD----LAHQHHVLRLARQLAHERGLAVIVVLHDLN-LAARYADRIVLLH 215
Query: 574 NGCVAEEGS 582
G + +G+
Sbjct: 216 QGRLVADGT 224
>gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 96.1 bits (239), Expect = 3e-22
Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 13/209 (6%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----YGEI 417
KN++ Y +KH + + ++++I L+G SG GKST+ R D+ G+I
Sbjct: 10 KNLNLWYGEKHALYD-ITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDI 68
Query: 418 LIDGQNISNVSQE--SLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
L +G+NI + + +LR +IGMV Q + +SI +N+ YG E E
Sbjct: 69 LYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEK 128
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ +L DE + +D+ + LSGGQ+QR+ IAR + N ++L+DE SALD
Sbjct: 129 SLKGAALWDEVKDRLHDSALS-----LSGGQQQRLCIARTLAVNPEVILMDEPCSALDPI 183
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTIS 564
A I+ + +L K TVI + H + +
Sbjct: 184 ATAKIEDLIEDLKKEYTVIIVTHNMQQAA 212
>gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation
protein NodI. This protein is required for normal
nodulation by nitrogen-fixing root nodule bacteria such
as Mesorhizobium loti. It is a member of the family of
ABC transporter ATP binding proteins and works with NodJ
to export a nodulation signal molecule. This model does
not recognize the highly divergent NodI from
Azorhizobium caulinodans [Cellular processes, Other,
Transport and binding proteins, Other].
Length = 303
Score = 97.3 bits (242), Expect = 3e-22
Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 17/230 (7%)
Query: 356 TNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
+N I VS SY K +++N+LS TI GE GL+G +GAGKSTI +LL G
Sbjct: 1 SNVAIDLVGVSKSYGDK-VVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRG 59
Query: 416 EILIDGQNISNVSQESLREQIGMVTQ-DTSLLHRSIRDNIL-YGRPDASECELFNAAKCA 473
+I + G+ + + ++ + R IG+V Q D ++R+N+L +GR +
Sbjct: 60 KITVLGEPVPSRARLA-RVAIGVVPQFDNLDPEFTVRENLLVFGR--------YFGMSTR 110
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
E + I SL E R A V LSGG ++R+ +AR ++ + +L+LDE T+ LD
Sbjct: 111 EIEAVIPSLL-EFARLESKADV--RVALLSGGMKRRLTLARALINDPQLLILDEPTTGLD 167
Query: 534 SEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
A I + L +L+ +GKT++ H + + DRL VL++G EG
Sbjct: 168 PHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEG 217
>gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding
protein. Members of this family are the ATP-binding
protein of the D-methionine ABC transporter complex.
Known members belong to the Proteobacteria.
Length = 343
Score = 98.0 bits (244), Expect = 3e-22
Identities = 82/245 (33%), Positives = 126/245 (51%), Gaps = 44/245 (17%)
Query: 360 IFFKNVSFSYDQ---KHLIINNLSLTIQPGEKIGLVGRSGAGKSTI---NNLLLRFYDIK 413
I N++ + Q +NN+SL + G+ G++G SGAGKST+ NLL R
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTS-- 59
Query: 414 YGEILIDGQNISNVSQESL---REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNA 469
G +++DGQ+++ +S L R QIGM+ Q +LL R++ N+ A EL N
Sbjct: 60 -GSVIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNV------ALPLELDNT 112
Query: 470 AK-----CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524
K + + L D+H Y ++ LSGGQ+QR+AIAR + N +LL
Sbjct: 113 PKDEIKRKVTELLALVGLGDKH--DSYPSN-------LSGGQKQRVAIARALASNPKVLL 163
Query: 525 LDEATSALDSEAEIAIQKSLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCV 577
DEATSALD A +S+ L+K G T++ I H + + + D + V+ NG +
Sbjct: 164 CDEATSALDP----ATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGEL 219
Query: 578 AEEGS 582
E+G+
Sbjct: 220 IEQGT 224
>gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated
ATPase domains [General function prediction only].
Length = 530
Score = 99.6 bits (249), Expect = 4e-22
Identities = 67/237 (28%), Positives = 110/237 (46%), Gaps = 35/237 (14%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +N+S +Y + ++ N+SLT+ PGE+IGLVGR+GAGKST+ +L + GE+
Sbjct: 4 ITLENLSLAYGDR-PLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTR 62
Query: 420 DGQNISNVSQESLREQIGMVTQDTSL-LHRSIRDNILYGRPDASECEL-FNAAKCAEADI 477
++G ++Q+ L +++ D ++ G + E A AD
Sbjct: 63 PKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADP 111
Query: 478 FIKSLTDEHGR-KGYDAHVGEHGIK-----------------LSGGQRQRIAIARVILKN 519
+ L + + D E + LSGG R+R+A+AR +L+
Sbjct: 112 DDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALARALLEE 171
Query: 520 APILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIV-LDNG 575
+LLLDE T+ LD E+ I + G TVI ++H + + I+ LD G
Sbjct: 172 PDLLLLDEPTNHLDLES-IEWLEDYLKRYPG-TVIVVSHDRYFLDNVATHILELDRG 226
Score = 94.2 bits (235), Expect = 3e-20
Identities = 64/235 (27%), Positives = 113/235 (48%), Gaps = 35/235 (14%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
F+NVS YD L++ +LS I G++I +VG +GAGKST+ LL G + + G
Sbjct: 324 FENVSKGYDGGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKV-G 382
Query: 422 QNISNVSQESLREQIGMVTQDTS--LLHRSIRDNILYGRPDASECELFNAAKCAEADIFI 479
+ + IG Q +++ + + G PD E E+
Sbjct: 383 ETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF------ 426
Query: 480 KSLTDEHGRKGYDAH--VGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
G G D VG LSGG++ R+ +A+++L+ +LLLDE T+ LD E+
Sbjct: 427 -------GFTGEDQEKPVG----VLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475
Query: 538 IAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNG 591
A++++L + +G TV+ ++H + + R+ ++++ EG + D L++
Sbjct: 476 EALEEALLDF-EG-TVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQKK 528
>gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 95.4 bits (237), Expect = 5e-22
Identities = 65/209 (31%), Positives = 105/209 (50%), Gaps = 13/209 (6%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----K 413
+I +N++ +D H I+ N++L I L+G SG GKST L R D+
Sbjct: 3 RIEVENLNTYFDDAH-ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 414 YGEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAK 471
G I +DG +I V LR+++GMV Q + +SI DN+ YG E + +
Sbjct: 62 EGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEE 121
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
E + +L DE K + + + LSGGQ+QR+ IAR I + ++L+DE SA
Sbjct: 122 RVEESLKAAALWDEVKDK-----LDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176
Query: 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
LD + I+ ++ L + T++ + H +
Sbjct: 177 LDPISTTKIEDLIHKLKEDYTIVIVTHNM 205
>gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein;
Provisional.
Length = 253
Score = 95.2 bits (237), Expect = 5e-22
Identities = 74/229 (32%), Positives = 118/229 (51%), Gaps = 24/229 (10%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----K 413
K+ + +SF Y ++++SL + + L+G SG GKST L R D+
Sbjct: 6 KMEARGLSFFYGDF-QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARV 64
Query: 414 YGEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYG-RPDASECELFNAA 470
GEIL+DG+NI +V LR ++GMV Q + +SI +N+ YG R + + + + A
Sbjct: 65 EGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAE 124
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+ E + +L DE + E + LSGGQ+QR+ IAR + +LL+DE S
Sbjct: 125 R-VERSLRHAALWDE-----VKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPAS 178
Query: 531 ALDSEAEIAIQKSLYNLMKGKTVIAIAH------RLSTISA---MDRLI 570
ALD A I++ ++ L T+I + H R+S ++A M +LI
Sbjct: 179 ALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLI 227
>gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of
the Na+ transporter. NatA is the ATPase component of a
bacterial ABC-type Na+ transport system called NatAB,
which catalyzes ATP-dependent electrogenic Na+ extrusion
without mechanically coupled proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of a single ATP-binding
protein and a single integral membrane protein.
Length = 218
Score = 94.0 bits (234), Expect = 7e-22
Identities = 66/208 (31%), Positives = 105/208 (50%), Gaps = 18/208 (8%)
Query: 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438
+S T++PGE GL+G +GAGK+T +L + G +DG ++ E+ R ++G
Sbjct: 24 VSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEPAEARR-RLGF 82
Query: 439 VTQDTSLLHR-SIRDNILY-GRPDASECELFNAAKCAEADIFIKSLTDEHGRKGY-DAHV 495
V+ T L R + R+N+ Y K E ++ L D G + D V
Sbjct: 83 VSDSTGLYDRLTARENLEYFAG--------LYGLKGDELTARLEELADRLGMEELLDRRV 134
Query: 496 GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVI 554
G S G RQ++AIAR ++ + P+LLLDE T+ LD A A+++ + L GK ++
Sbjct: 135 GG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCIL 190
Query: 555 AIAHRLSTISAM-DRLIVLDNGCVAEEG 581
H + + + DR++VL G V EG
Sbjct: 191 FSTHIMQEVERLCDRVVVLHRGRVVYEG 218
>gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE.
This family represents the NikE subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase
[Transport and binding proteins, Cations and iron
carrying compounds].
Length = 265
Score = 95.3 bits (237), Expect = 8e-22
Identities = 67/221 (30%), Positives = 104/221 (47%), Gaps = 21/221 (9%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430
Q+ ++ N+SL+I+ GE +GL+GRSG GKST+ LLL G + GQ++ + ++
Sbjct: 22 QRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81
Query: 431 S---LREQIGMVTQDTSLL---HRSIRDNILYGRPDASECELFNAAKCAEADIFIK--SL 482
R + +V QD+ ++R I G P L + + A + L
Sbjct: 82 QRRAFRRDVQLVFQDSPSAVNPRMTVRQII--GEPLRHLTSLDESEQKARIAELLDMVGL 139
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
E K +LSGGQ QRI IAR + +++LDEA S LD + I +
Sbjct: 140 RSEDADK-LPR-------QLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILE 191
Query: 543 SLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEE 580
L L + G + I H L + + R+ V+D G + EE
Sbjct: 192 LLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
>gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 94.8 bits (236), Expect = 9e-22
Identities = 68/239 (28%), Positives = 108/239 (45%), Gaps = 38/239 (15%)
Query: 351 KRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY 410
K+ T K+ ++VS Y +K + ++ L I +G SG GKST L R
Sbjct: 11 KKATATEIKMRARDVSVFYGEKQ-ALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMN 69
Query: 411 DI-----KYGEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYG------ 457
D G+I +DG++I + LR ++GMV Q + +SI +N+ YG
Sbjct: 70 DTIDGCRVTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGL 129
Query: 458 RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV----GEHGIKLSGGQRQRIAIA 513
+E + +I SL + G V E G LSGGQ+QR+ IA
Sbjct: 130 ARSKAELD----------EIVETSLR----KAGLWEEVKDRLHEPGTGLSGGQQQRLCIA 175
Query: 514 RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAH------RLSTISAM 566
R I + ++L+DE SALD A +++ + L + T++ + H R+S +A
Sbjct: 176 RAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAF 234
>gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding
subunit. This model describes spermidine/putrescine ABC
transporter, ATP binding subunit in bacteria and its
equivalents in archaea. This transport system belong to
the larger ATP-Binding Cassette (ABC) transporter
superfamily. The characteristic feature of these
transporter is the obligatory coupling of ATP hydrolysis
to substrate translocation. The minimal configuration of
bacterial ABC transport system: an ATPase or ATP binding
subunit; An integral membrane protein; a hydrophilic
polypetpide, which likely functions as substrate binding
protein. Polyamines like spermidine and putrescine play
vital role in cell proliferation, differentiation, and
ion homeostasis. The concentration of polyamines within
the cell are regulated by biosynthesis, degradation and
transport (uptake and efflux included) [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 325
Score = 96.0 bits (239), Expect = 1e-21
Identities = 61/200 (30%), Positives = 100/200 (50%), Gaps = 24/200 (12%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRS 449
L+G SG GK+T+ LL F G I++DG++++NV I MV Q +L H +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 450 IRDNILYG----RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGG 505
+ +N+ +G + +E + EA + + L + RK +LSGG
Sbjct: 59 VEENVAFGLKMRKVPRAEI----KPRVLEA-LRLVQLEEFADRKP---------HQLSGG 104
Query: 506 QRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI 563
Q+QR+A+AR ++ ILLLDE SALD + +Q L + + G T + + H
Sbjct: 105 QQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEA 164
Query: 564 SAM-DRLIVLDNGCVAEEGS 582
M DR+ ++ G +A+ G+
Sbjct: 165 MTMSDRIAIMRKGKIAQIGT 184
>gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein;
Provisional.
Length = 250
Score = 94.4 bits (235), Expect = 1e-21
Identities = 69/209 (33%), Positives = 106/209 (50%), Gaps = 13/209 (6%)
Query: 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI---- 412
GKI K++ Y + ++L I+ + L+G SG GKST L R D+
Sbjct: 1 MGKISVKDLDLFYGDFQ-ALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSV 59
Query: 413 -KYGEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNA 469
GE+L+DGQ+I S++ LR+++GMV Q + SI DN+ YG P + +
Sbjct: 60 KIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYG-PRTH--GIKDK 116
Query: 470 AKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529
K E I KSL + + + LSGGQ+QR+ IAR + +LL+DE T
Sbjct: 117 KKLDE--IVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPT 174
Query: 530 SALDSEAEIAIQKSLYNLMKGKTVIAIAH 558
SALD + + I++ + L K T++ + H
Sbjct: 175 SALDPISTLKIEELIQELKKDYTIVIVTH 203
>gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 275
Score = 94.8 bits (236), Expect = 1e-21
Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 26/231 (11%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI---KYGEILI 419
+++ +SY + ++ + GE + L+G +GAGKST L L F I GE+LI
Sbjct: 5 RDLKYSYPDGTEALKGINFKAEKGEMVALLGPNGAGKST---LFLHFNGILKPTSGEVLI 61
Query: 420 DGQNI--SNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDA--SECELFNAAKCA 473
G+ I S +R+ +G+V Q D L ++ +++ +G + S+ E+ K A
Sbjct: 62 KGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEA 121
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
+ G +G++ H LSGGQ++R+AIA ++ I++LDE TS LD
Sbjct: 122 LKAV---------GMEGFENKPPHH---LSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 534 SEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582
I K LY+L K G T+I H + + D++ V+ +G + +EG+
Sbjct: 170 PMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGT 220
>gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein;
Provisional.
Length = 258
Score = 94.0 bits (234), Expect = 1e-21
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 23/220 (10%)
Query: 350 AKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
AKR+ V + I++ + +++L I+P +G SG GKST+ L R
Sbjct: 2 AKRIDVKDLNIYYG--------SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRM 53
Query: 410 YDIK-----YGEILIDGQNI--SNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDA 461
+++ GE+L+DG+++ V ++R IGMV Q + SIRDN++ G
Sbjct: 54 HEVIPGARVEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAG---- 109
Query: 462 SECELFNAAKCAEADIFI-KSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNA 520
+L + D + KSL + + + G LSGGQ+QR+ IAR I
Sbjct: 110 --LKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEP 167
Query: 521 PILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
+LL+DE SALD + +AI+ + L + T++ + H +
Sbjct: 168 DVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNM 207
>gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein
YbbL; Provisional.
Length = 225
Score = 93.2 bits (232), Expect = 1e-21
Identities = 58/216 (26%), Positives = 102/216 (47%), Gaps = 22/216 (10%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+NV + I+NN+S +++ GE + G SG GKST+ ++ G +L +G+
Sbjct: 11 QNVGYLAGDA-KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGE 69
Query: 423 NISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG---RPDASECELFNAAKCAEADIFI 479
+IS + E R+Q+ Q +L ++ DN+++ R + IF+
Sbjct: 70 DISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIFPWQIRNQQ-----------PDPAIFL 118
Query: 480 KSLTDEHGRKGYDAHVGEHGI-KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
L R + I +LSGG++QRI++ R + +LLLDE TSALD +
Sbjct: 119 DDLE----RFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKH 174
Query: 539 AIQKSL--YNLMKGKTVIAIAHRLSTISAMDRLIVL 572
+ + + Y + V+ + H I+ D++I L
Sbjct: 175 NVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITL 210
>gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional.
Length = 306
Score = 94.9 bits (236), Expect = 2e-21
Identities = 73/234 (31%), Positives = 126/234 (53%), Gaps = 21/234 (8%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F+NV Y K L+++ LS +Q GE GL+G +GAGK+T +LL G I +
Sbjct: 8 IDFRNVEKRYGDK-LVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISL 66
Query: 420 DGQNISNVSQESLREQIGMVTQDTSL-LHRSIRDNIL-YGRPDASECELFNAAKCAEADI 477
G+ + + ++ + R+++G+V Q +L ++R+N+L +GR +AA
Sbjct: 67 CGEPVPSRARHA-RQRVGVVPQFDNLDPDFTVRENLLVFGRYFG-----LSAAAARAL-- 118
Query: 478 FIKSLTDEHGR--KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ L E + DA VGE LSGG ++R+ +AR ++ + +L+LDE T+ LD +
Sbjct: 119 -VPPLL-EFAKLENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQ 172
Query: 536 AEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLL 587
A + + L +L+ +GKT++ H + + DRL V++ G EG+ L+
Sbjct: 173 ARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALI 226
>gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 252
Score = 93.5 bits (233), Expect = 2e-21
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 27/234 (11%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +NVS SY ++++++SL I G ++G +GAGKST+ +++ R GEI I
Sbjct: 2 ITIENVSKSY-GTKVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITI 60
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGR-------PDASECELFNAAK 471
DG +++ + L +++ ++ Q+ + R ++RD + +GR + + N A
Sbjct: 61 DGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEA- 119
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
I L D R ++ E LSGGQRQR IA V+ ++ +LLDE +
Sbjct: 120 -----IEYLHLEDLSDR-----YLDE----LSGGQRQRAFIAMVLAQDTDYVLLDEPLNN 165
Query: 532 LDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582
LD + + I K L L GKT++ + H ++ S D ++ L NG V ++GS
Sbjct: 166 LDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGS 219
>gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 93.6 bits (232), Expect = 2e-21
Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 13/209 (6%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG--- 415
KI + V+F Y KH ++ N+++ + ++G SG GKST+ L R DI G
Sbjct: 4 KIKIRGVNFFY-HKHQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARL 62
Query: 416 --EILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAK 471
+L+D +NI N+ +LR+++GMV Q + +SI DN+ +G P L A+
Sbjct: 63 EGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFG-PRM----LGTTAQ 117
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
++ KSL ++ + G+ LSGGQ+QR+ IARV+ ++L+DE SA
Sbjct: 118 SRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSA 177
Query: 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
LD + + I++ + L + T+ + H +
Sbjct: 178 LDPVSTMRIEELMQELKQNYTIAIVTHNM 206
>gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding
subunit; Provisional.
Length = 356
Score = 95.7 bits (239), Expect = 2e-21
Identities = 80/246 (32%), Positives = 113/246 (45%), Gaps = 59/246 (23%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY----DIKY 414
+ + V SYD K +I + L + GE I LVG SG GKST LLR I
Sbjct: 3 GLKLQAVRKSYDGKTQVIKGIDLDVADGEFIVLVGPSGCGKST----LLRMVAGLERITS 58
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNA---- 469
GEI I G+ ++ + E I MV Q+ +L H S+R+N+ YG L
Sbjct: 59 GEIWIGGRVVNEL--EPADRDIAMVFQNYALYPHMSVRENMAYG--------LKIRGMPK 108
Query: 470 ----AKCAE-ADIF-IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523
+ AE A I ++ L D R +LSGGQRQR+A+ R I++ +
Sbjct: 109 AEIEERVAEAARILELEPLLDRKPR------------ELSGGQRQRVAMGRAIVREPAVF 156
Query: 524 LLDEATSALDSE------AEI-AIQKSLYNLMKGKTVIAIAHRLSTISAM---DRLIVLD 573
L DE S LD++ EI + + L T + + H + AM DR++V+
Sbjct: 157 LFDEPLSNLDAKLRVQMRLEIQRLHRRL-----KTTSLYVTH--DQVEAMTLADRVVVM- 208
Query: 574 NGCVAE 579
NG VAE
Sbjct: 209 NGGVAE 214
>gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component
of branched chain amino acids transport system. The
Mj1267/LivG ABC transporter subfamily is involved in the
transport of the hydrophobic amino acids leucine,
isoleucine and valine. MJ1267 is a branched-chain amino
acid transporter with 29% similarity to both the LivF
and LivG components of the E. coli branched-chain amino
acid transporter. MJ1267 contains an insertion from
residues 114 to 123 characteristic of LivG
(Leucine-Isoleucine-Valine) homologs. The branched-chain
amino acid transporter from E. coli comprises a
heterodimer of ABCs (LivF and LivG), a heterodimer of
six-helix TM domains (LivM and LivH), and one of two
alternative soluble periplasmic substrate binding
proteins (LivK or LivJ).
Length = 236
Score = 92.9 bits (232), Expect = 3e-21
Identities = 58/214 (27%), Positives = 107/214 (50%), Gaps = 10/214 (4%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
++++S +++PGE GL+G +GAGK+T+ NL+ F G +L DG++I+ + +
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLP-PHEIAR 74
Query: 436 IGMV-T-QDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEH-GRKGY 491
+G+ T Q L ++ +N++ + A+ + + +E R G
Sbjct: 75 LGIGRTFQIPRLFPELTVLENVMVAAQARTG-SGLLLARARREEREARERAEELLERVGL 133
Query: 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-- 549
+LS GQ++R+ IAR + + +LLLDE + L + E L ++
Sbjct: 134 ADLADRPAGELSYGQQRRLEIARALATDPKLLLLDEPAAGL-NPEETEELAELIRELRER 192
Query: 550 GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
G TV+ + H + + ++ DR+ VLD G V EG+
Sbjct: 193 GITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
>gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 93.2 bits (231), Expect = 4e-21
Identities = 67/235 (28%), Positives = 125/235 (53%), Gaps = 24/235 (10%)
Query: 363 KNVSFSYDQKHLI--INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420
+N+ F Y+++ + +N +S +I GE + ++G++G+GKST L+ ++ G++ ID
Sbjct: 8 ENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKID 67
Query: 421 GQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
G+ ++ + +LR +IGMV Q D + ++ D++ +G + + EA +
Sbjct: 68 GELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLA 127
Query: 479 IKSL---TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ L T E R LSGGQ+QR+A+A +I I++LDE+TS LD
Sbjct: 128 VNMLDFKTREPAR-------------LSGGQKQRVAVAGIIALRPEIIILDESTSMLDPT 174
Query: 536 AEIAIQKSLYNLMKGK---TVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLL 587
I + ++ + K K TV++I H L ++ DR++V+ G + +E + +L
Sbjct: 175 GRQEIMRVIHEI-KEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
>gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 305
Score = 93.7 bits (233), Expect = 5e-21
Identities = 66/216 (30%), Positives = 106/216 (49%), Gaps = 15/216 (6%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-IKY--- 414
K+ +++ Y H + +S+ I L+G SG GKST L R D IK
Sbjct: 45 KLSVEDLDVYYGDDH-ALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARI 103
Query: 415 -GEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECE------ 465
G + +DGQ+I V+ LR+++GMV Q + +SIR+NI YG +
Sbjct: 104 DGSVELDGQDIYQDGVNLVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLAR 163
Query: 466 -LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524
L K AE ++ +SL + + ++ + LSGGQ+QR+ IAR + + ++L
Sbjct: 164 LLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVIL 223
Query: 525 LDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
+DE SALD A I+ + L + TV+ + H +
Sbjct: 224 MDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNM 259
>gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette
domain of the molybdenum transport system. ModC is an
ABC-type transporter and the ATPase component of a
molybdate transport system that also includes the
periplasmic binding protein ModA and the membrane
protein ModB. ABC transporters are a large family of
proteins involved in the transport of a wide variety of
different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region, in addition to, the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 214
Score = 91.6 bits (228), Expect = 5e-21
Identities = 59/213 (27%), Positives = 101/213 (47%), Gaps = 23/213 (10%)
Query: 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL----- 432
+ + E G+ G SGAGKST+ + G I+++G + S++ +
Sbjct: 16 KIDFDL-NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGT-VLFDSRKKINLPPQ 73
Query: 433 REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGY 491
+ +IG+V Q +L H ++R+N+ +G E I + L D G
Sbjct: 74 QRKIGLVFQQYALFPHLNVRENLAFGLKRKRN---------REDRISVDELLD---LLGL 121
Query: 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-- 549
D + + +LSGG++QR+A+AR + +LLLDE SALD + + L + K
Sbjct: 122 DHLLNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNL 181
Query: 550 GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
VI + H LS + DR++V+++G + G
Sbjct: 182 NIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214
>gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 268
Score = 92.7 bits (230), Expect = 6e-21
Identities = 72/227 (31%), Positives = 111/227 (48%), Gaps = 14/227 (6%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEI 417
K++S Y +K +N++S+ I+ L+G SG GKST + R D+ GEI
Sbjct: 25 KDLSIYYGEKR-AVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEI 83
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
L +G NI SN++ +LR +IGMV Q + +SI +NI + A E K
Sbjct: 84 LYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGE-----RRKSVLD 138
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+I +SLT + + LSGGQ+QR+ IAR + +LLLDE SALD
Sbjct: 139 EIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPI 198
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
+ I++ + L + ++I + H + + DR NG + E
Sbjct: 199 SNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245
>gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system,
ATP-binding component PhnT. This ATP-binding component
of an ABC transport system is found in Salmonella and
Burkholderia lineages in the vicinity of enzymes for the
breakdown of 2-aminoethylphosphonate.
Length = 362
Score = 94.3 bits (234), Expect = 7e-21
Identities = 63/236 (26%), Positives = 112/236 (47%), Gaps = 28/236 (11%)
Query: 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY------D 411
G I ++ +Y ++++LSL I+ GE + L+G+SG GK+T LLR
Sbjct: 4 GGIRIDHLRVAYGAN-TVLDDLSLEIEAGELLALIGKSGCGKTT----LLRAIAGFVKAA 58
Query: 412 IKYGEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAA 470
G I I +++++ + + ++ Q+ +L H + DN+ +G A
Sbjct: 59 GLTGRIAIADRDLTHAPPH--KRGLALLFQNYALFPHLKVEDNVAFG---------LRAQ 107
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
K +ADI + + D G +LSGG +QRIAIAR I +LLLDE S
Sbjct: 108 KMPKADI-AERVADALKLVGLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLS 166
Query: 531 ALDSEAEIAIQ---KSLYNLMKGKTVIAIAH-RLSTISAMDRLIVLDNGCVAEEGS 582
ALD+ ++ +L+ + T++ + H + ++ D+ ++ +G +A G
Sbjct: 167 ALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222
>gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter,
ATP-binding protein. This small clade of ABC-type
transporter ATP-binding protein components is found as a
three gene cassette along with a periplasmic
substrate-binding protein (TIGR03868) and a permease
(TIGR03869). The organisms containing this cassette are
all Actinobacteria and all contain numerous genes
requiring the coenzyme F420. This model was defined
based on five such organisms, four of which are lacking
all F420 biosynthetic capability save the final
side-chain polyglutamate attachment step (via the gene
cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and
marine actinobacterium PHSC20C1 this cassette is in an
apparent operon with the cofE gene and, in PHSC20C1,
also with a F420-dependent glucose-6-phosphate
dehydrogenase (TIGR03554). Based on these observations
we propose that this ATP-binding protein is a component
of an F420-0 (that is, F420 lacking only the
polyglutamate tail) transporter.
Length = 256
Score = 91.8 bits (228), Expect = 1e-20
Identities = 65/218 (29%), Positives = 109/218 (50%), Gaps = 11/218 (5%)
Query: 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLR 433
LI++ + +T PG GL+G +G+GKST+ LL G + + G ++ +S+ +
Sbjct: 15 LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARA 74
Query: 434 EQIGMVTQDTSL-LHRSIRDNILYGR-PDASECELFNAAKCAEADIFIKSLTDEHGRKGY 491
++ +V QD+ + ++RD + GR P S L+ +A + ++L R
Sbjct: 75 RRVALVEQDSDTAVPLTVRDVVALGRIPHRS---LWAGDSPHDAAVVDRALA----RTEL 127
Query: 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KG 550
LSGG+RQR+ +AR + + +LLLDE T+ LD A++ + L G
Sbjct: 128 SHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATG 187
Query: 551 KTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLL 587
TV+A H L+ S D ++VLD G V G ++L
Sbjct: 188 VTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
>gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA
family. Members of this protein family are found mostly
in the Cyanobacteria, but also in the Planctomycetes.
Cyanobacterial examples are involved in heterocyst
formation, by which some fraction of members of the
colony undergo a developmental change and become capable
of nitrogen fixation. The DevBCA proteins are thought
export of either heterocyst-specific glycolipids or an
enzyme essential for formation of the laminated layer
found in heterocysts.
Length = 220
Score = 90.8 bits (226), Expect = 1e-20
Identities = 59/228 (25%), Positives = 114/228 (50%), Gaps = 18/228 (7%)
Query: 360 IFFKNVSFSY---DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
I +N++ Y + ++ +++L I PGE + L G SG+GK+T+ L+ ++ G
Sbjct: 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGS 61
Query: 417 ILIDGQNISNVSQESL---REQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKC 472
+ + GQ + S++ L R IG + Q +LL + R N+ + L
Sbjct: 62 LKVLGQELYGASEKELVQLRRNIGYIFQAHNLLGFLTARQNVQMAL-ELQP-NLSYQEAR 119
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
A ++++ G H+ + LSGGQ+QR+AIAR ++ ++L DE T+AL
Sbjct: 120 ERARAMLEAV-------GLGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAAL 172
Query: 533 DSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVA 578
DS++ + + + L + G T++ + H + DR++ +++G +
Sbjct: 173 DSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKLL 220
>gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 92.0 bits (229), Expect = 1e-20
Identities = 73/256 (28%), Positives = 131/256 (51%), Gaps = 37/256 (14%)
Query: 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYD 411
I +N++ Y + ++N+++ I+ GE +GL+G +G+GKST +N LL
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLL----K 58
Query: 412 IKYGEILIDGQNIS--NVSQESLREQIGMVTQ--DTSLLHRSIRDNILYG--RPDASECE 465
G+I+IDG +I+ V +R+++G+V Q + L +I +I +G SE E
Sbjct: 59 PTSGKIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEE 118
Query: 466 LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL 525
+ N K A + + Y+ + + +LSGGQ++R+AIA V+ IL+L
Sbjct: 119 IENRVKRAMNIVGLD----------YEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILIL 168
Query: 526 DEATSALDSEAEIAIQKSLYNLMKGK--TVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
DE T+ LD + I + L K T+I ++H + ++ + DR+IV++ G +G+
Sbjct: 169 DEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGT 228
Query: 583 ------HLDLLKKNGL 592
++ L+ GL
Sbjct: 229 PREVFKEVETLESIGL 244
>gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 90.8 bits (225), Expect = 2e-20
Identities = 66/206 (32%), Positives = 105/206 (50%), Gaps = 14/206 (6%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----YGEI 417
++V+ Y K + N++L +Q G L+G SG GK+T + R +D+ G I
Sbjct: 8 QDVNIYYGDKQ-AVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRI 66
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAE 474
L+DGQ+I V ++R ++GMV Q + S+ DN++ G A + + + AE
Sbjct: 67 LLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAE 126
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
+ +L DE + G LSGGQ+QR+ IAR + ILL+DE TSALD
Sbjct: 127 RSLRGAALWDEVKDRLKTPATG-----LSGGQQQRLCIARALAVEPEILLMDEPTSALDP 181
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAHRL 560
+ I+ + +L K T+I + H +
Sbjct: 182 ASTARIEDLMTDLKKVTTIIIVTHNM 207
>gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in
lysophospholipase L1 biosynthesis, ATPase component
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 228
Score = 90.2 bits (224), Expect = 2e-20
Identities = 55/213 (25%), Positives = 97/213 (45%), Gaps = 17/213 (7%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL-- 432
I+ + L ++ GE + +VG SG+GKST+ +L D GE+ + GQ + + +++
Sbjct: 25 ILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84
Query: 433 --REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
+G V Q L+ + + +N+ A EL + AD +
Sbjct: 85 LRARHVGFVFQSFHLIPNLTALENV------ALPLEL---RGESSADSRAGA-KALLEAV 134
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
G + + +LSGG++QR+A+AR +L DE T LD I L+ L +
Sbjct: 135 GLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNR 194
Query: 550 --GKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580
G T++ + H + DR + L +G + E+
Sbjct: 195 ERGTTLVLVTHDPQLAARCDRQLRLRSGRLVED 227
>gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of
the bacitracin-resistance transporter. The BcrA
subfamily represents ABC transporters involved in
peptide antibiotic resistance. Bacitracin is a
dodecapeptide antibiotic produced by B. licheniformis
and B. subtilis. The synthesis of bacitracin is
non-ribosomally catalyzed by a multi-enzyme complex
BcrABC. Bacitracin has potent antibiotic activity
against gram-positive bacteria. The inhibition of
peptidoglycan biosynthesis is the best characterized
bacterial effect of bacitracin. The bacitracin
resistance of B. licheniformis is mediated by the ABC
transporter Bcr which is composed of two identical BcrA
ATP-binding subunits and one each of the integral
membrane proteins, BcrB and BcrC. B. subtilis cells
carrying bcr genes on high-copy number plasmids develop
collateral detergent sensitivity, a similar phenomenon
in human cells with overexpressed multi-drug resistance
P-glycoprotein.
Length = 208
Score = 89.2 bits (222), Expect = 2e-20
Identities = 59/227 (25%), Positives = 108/227 (47%), Gaps = 30/227 (13%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+++ +Y K +++++SL ++ GE G +G +GAGK+T ++L GEI DG+
Sbjct: 4 NDLTKTY-GKKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGK 62
Query: 423 NISNVSQESLREQIGMVTQDTSL-LHRSIRDNI-----LYGRPDASECELFNAAKCAEAD 476
+ +IG + + + + R+N+ L G E+ +
Sbjct: 63 SYQK--NIEALRRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLD-------- 112
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ L D +K V S G +QR+ IA +L N +L+LDE T+ LD +
Sbjct: 113 --VVGLKDSAKKK-----VK----GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDG 161
Query: 537 EIAIQKSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
+++ + +L G TV+ +H LS I + DR+ +++ G + EEG
Sbjct: 162 IKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
>gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding
protein YecC; Provisional.
Length = 250
Score = 90.6 bits (225), Expect = 2e-20
Identities = 69/230 (30%), Positives = 112/230 (48%), Gaps = 40/230 (17%)
Query: 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD---------IKYGEILIDGQN 423
+++ + L ++PGE + ++G SG+GK+T LLR + I+ G+I ID
Sbjct: 16 QTVLHGIDLEVKPGEVVAIIGPSGSGKTT----LLRCINLLEQPEAGTIRVGDITIDTAR 71
Query: 424 ISNVSQ---ESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFI 479
+ + LR+ +G V Q+ +L HR++ +NI+ G P + E A
Sbjct: 72 SLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEG-PVIVKGEPKEEAT-------- 122
Query: 480 KSLTDEHGRKGYDAHVGEHGI------KLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
R+ A VG G +LSGGQ+QR+AIAR + ++L DE TSALD
Sbjct: 123 -----ARARE-LLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALD 176
Query: 534 SEAEIAIQKSLYNLMKGK-TVIAIAHRLS-TISAMDRLIVLDNGCVAEEG 581
E + ++ L + K T++ + H +S DR I +D G + E+G
Sbjct: 177 PELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226
>gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding
protein. This model represents the ATP-binding cassette
(ABC) protein of the three subunit molybdate ABC
transporter. The three proteins of this complex are
homologous to proteins of the sulfate ABC transporter.
Molybdenum may be used in nitrogenases of
nitrogen-fixing bacteria and in molybdopterin cofactors.
In some cases, molybdate may be transported by a sulfate
transporter rather than by a specific molybdate
transporter [Transport and binding proteins, Anions].
Length = 354
Score = 92.5 bits (230), Expect = 3e-20
Identities = 62/215 (28%), Positives = 106/215 (49%), Gaps = 26/215 (12%)
Query: 379 LSLTIQPGEKIGLVGRSGAGKSTINNL---LLRFYDIKYGEILIDGQNISNVSQESL--- 432
T+ + GRSG+GK+T+ L L R + GEI+++G+ + + +
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDE---GEIVLNGRTLFDSRKGIFLPP 72
Query: 433 -REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
+ +IG V Q+ L H S+R N+ YG A + +E I + + + G
Sbjct: 73 EKRRIGYVFQEARLFPHLSVRGNLRYGMKRA---------RPSERRISFERVIE---LLG 120
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK- 549
+G +LSGG++QR+AI R +L + +LL+DE +ALD + I L L
Sbjct: 121 IGHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAE 180
Query: 550 -GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
G ++ ++H L + + DR++VL++G VA G
Sbjct: 181 FGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGP 215
>gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 285
Score = 91.0 bits (226), Expect = 3e-20
Identities = 59/210 (28%), Positives = 103/210 (49%), Gaps = 25/210 (11%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEI 417
++++ Y + ++++S+ I + ++G SG GKST + R D+ GE+
Sbjct: 43 RDLNVFYGDEQ-ALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGEL 101
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYG-----RPDASECELFNAA 470
G+N+ ++V +LR +IGMV Q + +SI DN+ YG + + +
Sbjct: 102 TFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESL 161
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+ A +L DE + G+ LSGGQ+QR+ IAR I + ++L+DE S
Sbjct: 162 RRA-------ALWDE-----VKDQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPAS 209
Query: 531 ALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
ALD A I+ + L + TV+ + H +
Sbjct: 210 ALDPVATSKIEDLIEELAEEYTVVIVTHNM 239
>gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit;
Provisional.
Length = 377
Score = 92.2 bits (229), Expect = 4e-20
Identities = 66/219 (30%), Positives = 118/219 (53%), Gaps = 21/219 (9%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+N++ S+D +H ++++SLTI GE L+G SG GKST+ +L F G+I++DG
Sbjct: 23 RNLTKSFDGQH-AVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGV 81
Query: 423 NISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG--RPDASECELFNAAKCAEADIFI 479
++S+V + I M+ Q +L H ++ NI +G + + E+ A++ E + +
Sbjct: 82 DLSHVP--PYQRPINMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEI--ASRVNEM-LGL 136
Query: 480 KSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIA 539
+ + RK + +LSGGQRQR+A+AR + K +LLLDE ALD +
Sbjct: 137 VHMQEFAKRKPH---------QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDR 187
Query: 540 IQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNG 575
+Q + ++++ G T + + H M R+ +++ G
Sbjct: 188 MQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRG 226
>gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter. ABC transporters for a large
family of proteins responsible for translocation of a
variety of compounds across biological membranes. ABC
transporters are the largest family of proteins in many
completely sequenced bacteria. ABC transporters are
composed of two copies of this domain and two copies of
a transmembrane domain pfam00664. These four domains may
belong to a single polypeptide as in human CFTR, or
belong in different polypeptide chains.
Length = 119
Score = 85.8 bits (213), Expect = 4e-20
Identities = 43/133 (32%), Positives = 66/133 (49%), Gaps = 16/133 (12%)
Query: 400 STINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIGMVTQDTSLLHR-SIRDNILYG 457
ST+ L+ G IL+DG++ + +S + LR++IG+V QD L ++R+N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 458 RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517
E + L D R+ LSGGQ+QR+AIAR +L
Sbjct: 61 LR-DKEADARAEEALERVG-----LPDFLDREP--------VGTLSGGQKQRVAIARALL 106
Query: 518 KNAPILLLDEATS 530
K +LLLDE T+
Sbjct: 107 KKPKLLLLDEPTA 119
>gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein.
[Transport and binding proteins, Anions].
Length = 237
Score = 89.5 bits (222), Expect = 4e-20
Identities = 59/215 (27%), Positives = 105/215 (48%), Gaps = 24/215 (11%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+++++L + G + L+G SG+GKST+ ++ G I ++GQ+ + V +
Sbjct: 16 LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--DRK 73
Query: 436 IGMVTQDTSLL-HRSIRDNILYG----RPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
IG V Q +L H ++RDNI +G + A A + ++ + E
Sbjct: 74 IGFVFQHYALFKHLTVRDNIAFGLEIRKHPK-------AKIKARVEELLELVQLEGLGDR 126
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ---KSLYNL 547
Y +LSGGQRQR+A+AR + +LLLDE ALD++ ++ + L++
Sbjct: 127 YPN-------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDE 179
Query: 548 MKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582
+ TV + + DR++V+ NG + + GS
Sbjct: 180 VHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGS 214
>gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D.
This model describes the ATP binding subunits of nitrate
transport in bacteria and archaea. This protein belongs
to the ATP-binding cassette (ABC) superfamily. It is
thought that the two subunits encoded by ntrC and ntrD
form the binding surface for interaction with ATP. This
model is restricted in identifying ATP binding subunit
associated with the nitrate transport. Nitrate
assimilation is aided by other proteins derived from the
operon which among others include products of ntrA - a
regulatory protein; ntrB - a hydropbobic transmembrane
permease and narB - a reductase [Transport and binding
proteins, Anions, Transport and binding proteins,
Other].
Length = 230
Score = 89.1 bits (221), Expect = 4e-20
Identities = 69/220 (31%), Positives = 110/220 (50%), Gaps = 27/220 (12%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+ ++LTIQ GE I L+G SG GKST+ NL+ G ++++G+ I+ + +
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRM--- 57
Query: 436 IGMVTQDTSLLH-RSIRDNILYG----RPDASECELFNAAKCAEADIFIKSLTD-EHGRK 489
+V Q+ SLL ++R+NI PD S+ E E I + LT+ R
Sbjct: 58 --VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSE---RRAIVEEHIALVGLTEAADKRP 112
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
G +LSGG +QR+AIAR + +LLLDE ALD+ +Q+ L + +
Sbjct: 113 G----------QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWE 162
Query: 550 --GKTVIAIAHRL-STISAMDRLIVLDNGCVAEEGSHLDL 586
TV+ + H + + DR+++L NG A G L++
Sbjct: 163 EHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIGQILEV 202
>gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 254
Score = 89.7 bits (222), Expect = 4e-20
Identities = 70/220 (31%), Positives = 108/220 (49%), Gaps = 13/220 (5%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG-----EILIDGQNI--SNVS 428
+NN+++ I L+G SG GKST L R D+ G ++ +G+NI +N
Sbjct: 23 LNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFD 82
Query: 429 QESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGR 488
LR +IGMV Q + SI DNI YG + + E + +L +E
Sbjct: 83 ILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKD 142
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
K + + + LSGGQ+QR+ IAR + ++L+DE TSALD + I++ + NL
Sbjct: 143 K-----LNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLK 197
Query: 549 KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLL 587
+ T+I + H + + DR NGC+ EE S +L
Sbjct: 198 ESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELF 237
>gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 89.8 bits (223), Expect = 6e-20
Identities = 75/256 (29%), Positives = 128/256 (50%), Gaps = 46/256 (17%)
Query: 363 KNVSFSY-----DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTI----NNLLLRFYDIK 413
KNVS+ Y + L +++++L ++ GE + ++GR+G+GKSTI N LL+
Sbjct: 8 KNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIP----S 63
Query: 414 YGEILIDGQNISNVSQE-SLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAA 470
G++ +DG + S+ +R + GMV Q D ++ + +++ +G P+ N
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFG-PE-------NLG 115
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIK------LSGGQRQRIAIARVILKNAPILL 524
E I+ DE +K VG + + LSGGQ+QR+AIA ++ ++
Sbjct: 116 IPPEE---IRERVDESLKK-----VGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECII 167
Query: 525 LDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG- 581
DE T+ LD + ++ L K G T+I I H + DR+IV+D+G V EG
Sbjct: 168 FDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
Query: 582 -----SHLDLLKKNGL 592
++++KK GL
Sbjct: 228 PKEIFKEVEMMKKIGL 243
>gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 89.3 bits (221), Expect = 6e-20
Identities = 66/209 (31%), Positives = 97/209 (46%), Gaps = 13/209 (6%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEI 417
+V Y + + + L E L+G SG GKST L R D+ G +
Sbjct: 9 SDVHLFYGKFE-ALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNV 67
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
+ GQNI N LR+Q+GMV Q + SI +N++YG A + + E
Sbjct: 68 SLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVET 127
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ ++ DE H+ E + LSGGQ+QR+ IARV+ ++LLDE TSALD
Sbjct: 128 SLKQAAIWDE-----VKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPI 182
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTIS 564
+ I+ L L T+I + H + S
Sbjct: 183 SSTQIENMLLELRDQYTIILVTHSMHQAS 211
>gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 269
Score = 89.5 bits (222), Expect = 7e-20
Identities = 71/238 (29%), Positives = 112/238 (47%), Gaps = 31/238 (13%)
Query: 356 TNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI--- 412
N I +NV+ SY + N+ I G+ L+G SG GKST+ L R D+
Sbjct: 10 KNIIISLQNVTISYG-TFEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEG 68
Query: 413 --KYGEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFN 468
G +L DG ++ V +R +IGMV Q + +SI +NI +G N
Sbjct: 69 CSLKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFG-------ARIN 121
Query: 469 AAKCAEADIFIKSLT-----DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523
++ +SL DE K + E G LSGGQ+QR+ IAR I ++
Sbjct: 122 GYTGDMDELVERSLRKAAVWDECKDK-----LNESGYSLSGGQQQRLCIARTIAIEPEVI 176
Query: 524 LLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAH------RLSTISAMDRLIVLDNG 575
L+DE SALD + + I+++++ L K T++ + H R+S ++A ++ G
Sbjct: 177 LMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGG 234
>gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter,
ATP-binding protein. Members of this family are the
ATP-binding protein of a conserved four gene ABC
transporter operon found next to ectoine unilization
operons and ectoine biosynthesis operons. Ectoine is a
compatible solute that protects enzymes from high
osmolarity. It is released by some species in response
to hypoosmotic shock, and it is taken up by a number of
bacteria as a compatible solute or for consumption. This
family shows strong sequence similiarity to a number of
amino acid ABC transporter ATP-binding proteins.
Length = 252
Score = 89.1 bits (221), Expect = 7e-20
Identities = 65/247 (26%), Positives = 109/247 (44%), Gaps = 48/247 (19%)
Query: 365 VSFSYDQKHL----IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420
V FS K +++ L+ ++ GEK+ L+G SG+GKSTI +L+ I G+I ++
Sbjct: 1 VRFSDVTKRFGILTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVE 60
Query: 421 GQNISNVSQES-------------LREQIGMVTQDTSLL-HRSIRDNILYGRPDASECEL 466
G+ + ++ + +R +IGMV Q +L H+++ DN+
Sbjct: 61 GEQLYHMPGRNGPLVPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNV------------ 108
Query: 467 FNAAKCAEADIFIKSLTDEHGRK---------GYDAHVGEHGIKLSGGQRQRIAIARVIL 517
EA + + + K G +LSGGQ+QR+AIAR +
Sbjct: 109 ------TEAPVLVLGMARAEAEKRAMELLDMVGLADKADHMPAQLSGGQQQRVAIARALA 162
Query: 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGK--TVIAIAHRLSTISAM-DRLIVLDN 574
++L DE TSALD E + + L T++ + H + DR+ D
Sbjct: 163 MRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDK 222
Query: 575 GCVAEEG 581
G + E+G
Sbjct: 223 GRIVEQG 229
>gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE;
Provisional.
Length = 268
Score = 89.0 bits (221), Expect = 1e-19
Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 29/225 (12%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430
Q ++NN+SL+++ GE + L+GRSG GKST+ LL+ G + G+ ++ +++
Sbjct: 23 QHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRA 82
Query: 431 ---SLREQIGMVTQDT-SLLH--RSIRDNILYGRPDASECELFNAAKCAEADIFIKS--L 482
+ R I MV QD+ S ++ +++R+ I P L A + A A +++ L
Sbjct: 83 QRKAFRRDIQMVFQDSISAVNPRKTVREII--REPLRHLLSLDKAERLARASEMLRAVDL 140
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
D K +LSGGQ QR+ +AR + +L+LDEA S LD + +Q
Sbjct: 141 DDSVLDK--------RPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD----LVLQA 188
Query: 543 SLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEE 580
+ L+K G + I H L + R++V+DNG + E
Sbjct: 189 GVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVET 233
>gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 88.0 bits (218), Expect = 2e-19
Identities = 63/199 (31%), Positives = 104/199 (52%), Gaps = 18/199 (9%)
Query: 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTIN---NLLLRFY-DIKY-GEILIDGQNI-- 424
+H + N++L+I E ++G SG GKST NL+++ ++K GE+ +G NI
Sbjct: 24 QHHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILK 83
Query: 425 SNVSQESLREQIGMVTQDTSLLHRSIRDNILYG---RPDASECELFNAAKCAEADIFIKS 481
V LR+ IGMV Q + +SI DN+ YG ++ +L + + D+ +
Sbjct: 84 GKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDV---A 140
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
L DE + + LSGGQ+QR+ IAR + N +LL+DE TSALD + I+
Sbjct: 141 LWDE-----VKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIE 195
Query: 542 KSLYNLMKGKTVIAIAHRL 560
+ + L + T++ + H +
Sbjct: 196 ELILKLKEKYTIVIVTHNM 214
>gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter
nucleotide-binding domain. ABC transporters are a large
family of proteins involved in the transport of a wide
variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide-binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 157
Score = 85.4 bits (212), Expect = 2e-19
Identities = 36/76 (47%), Positives = 48/76 (63%), Gaps = 2/76 (2%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRL 560
LSGGQRQR+A+AR +L N +LLLDE TS LD + + + L L +G+TVI + H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 561 STIS-AMDRLIVLDNG 575
A DR+IVL +G
Sbjct: 141 ELAELAADRVIVLKDG 156
Score = 81.1 bits (201), Expect = 5e-18
Identities = 33/80 (41%), Positives = 51/80 (63%), Gaps = 1/80 (1%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+N+SF Y + ++N+SLT++ GE + LVG +G+GKST+ + GEILIDG
Sbjct: 2 IENLSFRYGGRT-ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 422 QNISNVSQESLREQIGMVTQ 441
++I+ + E LR +IG V Q
Sbjct: 61 KDIAKLPLEELRRRIGYVPQ 80
>gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of
the sulfate transporter. Part of the ABC transporter
complex cysAWTP involved in sulfate import. Responsible
for energy coupling to the transport system. The complex
is composed of two ATP-binding proteins (cysA), two
transmembrane proteins (cysT and cysW), and a
solute-binding protein (cysP). ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region, in
addition to, the Walker A motif/P-loop and Walker B
motif commonly found in a number of ATP- and GTP-binding
and hydrolyzing proteins.
Length = 239
Score = 87.4 bits (217), Expect = 2e-19
Identities = 66/242 (27%), Positives = 116/242 (47%), Gaps = 43/242 (17%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +NVS + + ++++SL I GE + L+G SG+GK+T+ L+ G IL
Sbjct: 3 IEVRNVSKRFGD-FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILF 61
Query: 420 DGQNISNVSQESLRE-QIGMVTQDTSLL-HRSIRDNILYG--------RPDASECELFNA 469
G+ + + ++E +G V Q +L H ++ DN+ +G RP +E
Sbjct: 62 GGE---DATDVPVQERNVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIR---- 114
Query: 470 AKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529
A+ +K + + Y A +LSGGQRQR+A+AR + +LLLDE
Sbjct: 115 ---AKVHELLKLVQLDWLADRYPA-------QLSGGQRQRVALARALAVEPKVLLLDEPF 164
Query: 530 SALDSEAEIAIQKSLYNLMK------GKTVIAIAHRLSTISAM---DRLIVLDNGCVAEE 580
ALD++ ++K L ++ T + + H A+ DR++V++ G + +
Sbjct: 165 GALDAK----VRKELRRWLRRLHDELHVTTVFVTHDQE--EALEVADRVVVMNKGRIEQV 218
Query: 581 GS 582
G+
Sbjct: 219 GT 220
>gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG
transporter subfamily. The White subfamily represents
ABC transporters homologous to the Drosophila white
gene, which acts as a dimeric importer for eye pigment
precursors. The eye pigmentation of Drosophila is
developed from the synthesis and deposition in the cells
of red pigments, which are synthesized from guanine, and
brown pigments, which are synthesized from tryptophan.
The pigment precursors are encoded by the white, brown,
and scarlet genes, respectively. Evidence from genetic
and biochemical studies suggest that the White and Brown
proteins function as heterodimers to import guanine,
while the White and Scarlet proteins function to import
tryptophan. However, a recent study also suggests that
White may be involved in the transport of a metabolite,
such as 3-hydroxykynurenine, across intracellular
membranes. Mammalian ABC transporters belonging to the
White subfamily (ABCG1, ABCG5, and ABCG8) have been
shown to be involved in the regulation of
lipid-trafficking mechanisms in macrophages,
hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8),
the human homolog of the Drosophila white gene is
induced in monocyte-derived macrophages during
cholesterol influx mediated by acetylated low-density
lipoprotein. It is possible that human ABCG1 forms
heterodimers with several heterologous partners.
Length = 226
Score = 86.9 bits (216), Expect = 3e-19
Identities = 56/220 (25%), Positives = 109/220 (49%), Gaps = 18/220 (8%)
Query: 370 DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLL---LRFYDIKYGEILIDGQNISN 426
++ I+N++SL ++ G+ + ++G SG+GK+T+ + + + G+IL +GQ
Sbjct: 17 NKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQP--- 73
Query: 427 VSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDE 485
+ ++ + V QD LL ++R+ + Y + +A + + L D
Sbjct: 74 RKPDQFQKCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDV--LLRDL 131
Query: 486 HGRKGYDAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSL 544
+G + +K +SGG+R+R++IA +L + +L+LDE TS LDS + + +L
Sbjct: 132 A-----LTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTL 186
Query: 545 YNLMK-GKTVIAIAH--RLSTISAMDRLIVLDNGCVAEEG 581
L + + VI H R DR+++L +G + G
Sbjct: 187 SQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
>gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 263
Score = 87.8 bits (218), Expect = 3e-19
Identities = 65/226 (28%), Positives = 106/226 (46%), Gaps = 18/226 (7%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
K FFK + +K +N LSL I G+ + ++G +GAGKST+ N + G+IL
Sbjct: 9 KTFFKG---TPLEKR-ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQIL 64
Query: 419 IDGQNISNVSQESLREQIGMVTQD------TSLLHRSIRDNILYGRPDASECELFNAAKC 472
IDG +++ S + V QD L +I +N+ + L +A
Sbjct: 65 IDGVDVTKKSVAKRANLLARVFQDPLAGTAPEL---TIEENLALAESRGKKRGLSSALNE 121
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
F + L G + + + LSGGQRQ +++ L ILLLDE T+AL
Sbjct: 122 RRRSSFRERLARLG--LGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAAL 179
Query: 533 DSE-AEIAIQKSLYNLMKGK-TVIAIAHRL-STISAMDRLIVLDNG 575
D + AE ++ + + + K T + + H + + +RLI+L +G
Sbjct: 180 DPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSG 225
>gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 258
Score = 87.8 bits (217), Expect = 3e-19
Identities = 66/213 (30%), Positives = 103/213 (48%), Gaps = 14/213 (6%)
Query: 355 VTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
V +I +N++ Y +K + N+S+ I L+G SG GKST L R D+
Sbjct: 8 VAQPQIKVENLNLWYGEKQ-ALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIK 66
Query: 415 -----GEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELF 467
G++ I+G++I +V LR+ +GMV Q + SI DN+ YG P
Sbjct: 67 NCRIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYG-PRIHGANKK 125
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
+ E + +L DE + + + LSGGQ+QR+ IAR + I+L DE
Sbjct: 126 DLDGVVENALRSAALWDETSDR-----LKSPALSLSGGQQQRLCIARTLAVKPKIILFDE 180
Query: 528 ATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
TSALD + I+ + NL K T++ + H +
Sbjct: 181 PTSALDPISTARIEDLIMNLKKDYTIVIVTHNM 213
>gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 251
Score = 87.4 bits (216), Expect = 3e-19
Identities = 75/237 (31%), Positives = 110/237 (46%), Gaps = 22/237 (9%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKY-GEI 417
K+V SY ++ +SL + E L+G SG GKST L R D IK GEI
Sbjct: 8 KDVHLSYGNYE-ALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEI 66
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
+GQNI S + LR+++GMV Q + S+ DN+ YG A +
Sbjct: 67 KFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYG---------LKIAGVKDK 117
Query: 476 DIFIK----SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
++ + SL K ++ + SGGQ+QRI IAR + ++LLDE TSA
Sbjct: 118 ELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSA 177
Query: 532 LDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLL 587
LD + I+++L L T I + H L + D+ L NG + E G ++
Sbjct: 178 LDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMF 234
>gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 87.3 bits (216), Expect = 3e-19
Identities = 66/238 (27%), Positives = 114/238 (47%), Gaps = 14/238 (5%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKY- 414
I +N S Y +K + N+++ I + ++G SG GK+T+ + R D +
Sbjct: 4 IEIENFSAYYGEK-KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVE 62
Query: 415 GEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC 472
G+I GQ+I + R+++GMV Q + SI DN+ +G +
Sbjct: 63 GKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRI 122
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
E + +L DE + + + G +LSGGQ+QR+ IAR + ++LLDE TSAL
Sbjct: 123 VEESLKKAALWDE-----VKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSAL 177
Query: 533 DSEAEIAIQKSLYNLMKGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKK 589
D A I+K L L + T++ + H + I D + + G + E G +++++
Sbjct: 178 DPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVER 235
>gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein;
Provisional.
Length = 264
Score = 87.1 bits (216), Expect = 4e-19
Identities = 66/228 (28%), Positives = 112/228 (49%), Gaps = 17/228 (7%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEI 417
+N++ Y L + N+ L I + +G SG GKSTI R D+ G++
Sbjct: 14 ENLNVYYG-SFLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKV 72
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYG-RPDASECELFNAAKCAE 474
G+N+ +V +R +IGMV Q + +SI DNI YG R + + ++ + E
Sbjct: 73 TFHGKNLYAPDVDPVEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDM---DELVE 129
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
+ +L DE K + + G+ LSGGQ+QR+ IAR I ++L+DE SALD
Sbjct: 130 RSLRQAALWDEVKDK-----LKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDP 184
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582
+ + I++ ++ L + T+I + H + + + + N + E G
Sbjct: 185 ISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGG 232
>gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein;
Provisional.
Length = 271
Score = 86.8 bits (215), Expect = 5e-19
Identities = 66/216 (30%), Positives = 103/216 (47%), Gaps = 35/216 (16%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEI 417
+N++ Y + H + N++L I E ++G SG GKST L R ++ G+I
Sbjct: 28 QNLNLWYGEDH-ALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKI 86
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRP-----------DASEC 464
L QNI + S E LR +GMV Q + +SI DN+ YG + E
Sbjct: 87 LYRDQNIFDKSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEK 146
Query: 465 ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524
L AA + DE + +D G LSGGQ+QR+ IAR + ++L
Sbjct: 147 SLRGAA-----------IWDELKDRLHDNAYG-----LSGGQQQRLCIARCLAIEPDVIL 190
Query: 525 LDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
+DE TSALD + + +++ + L K ++I + H +
Sbjct: 191 MDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNM 226
>gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit;
Provisional.
Length = 257
Score = 86.3 bits (214), Expect = 8e-19
Identities = 71/233 (30%), Positives = 109/233 (46%), Gaps = 41/233 (17%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
VS Y ++ ++N L L I G+ + +VGRSG GKST+ LL GE+L
Sbjct: 16 NAVSKRYGERT-VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA 74
Query: 423 NISNVSQESLREQIGMVTQDTSLLH-RSIRDNILYG-----RPDASECELFNAAKCAEAD 476
++ RE ++ QD LL + + DN+ G R A + A A
Sbjct: 75 PLAEA-----REDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQ---------ALAA 120
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+ G E LSGGQ+QR+A+AR ++ +LLLDE ALD+
Sbjct: 121 V------------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALT 168
Query: 537 EIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDL 586
I +Q + +L + G TV+ + H +S AM DR+++++ G + LDL
Sbjct: 169 RIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIG-----LDL 216
>gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 259
Score = 86.2 bits (213), Expect = 8e-19
Identities = 61/208 (29%), Positives = 104/208 (50%), Gaps = 13/208 (6%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----Y 414
I K++SF Y+ I +S+ I + ++G SG GKST L R +++
Sbjct: 8 IKVKDLSFYYNTSK-AIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVE 66
Query: 415 GEILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC 472
G + GQNI ++ LR QIGMV Q + SI +N+ YG +++ + +
Sbjct: 67 GVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEI 126
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
E+ + +L E K + + + LSGGQ+QR+ IAR + +LL+DE SAL
Sbjct: 127 VESALKGAALWQEVKDK-----LNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSAL 181
Query: 533 DSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
D A + +++ +++L T+ + H +
Sbjct: 182 DPIATMKVEELIHSLRSELTIAIVTHNM 209
>gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 237
Score = 85.2 bits (212), Expect = 9e-19
Identities = 63/237 (26%), Positives = 113/237 (47%), Gaps = 28/237 (11%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+N+S Y + + +SL ++ GE + L+GR+GAGK+T+ ++ + G I+ DG
Sbjct: 6 VENLSAGYGKIQ-ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDG 64
Query: 422 QNISNV-SQESLREQIGMVTQDTSLLHR-SIRDNIL---YGRPDASECELFNAAKCAEA- 475
++I+ + E R I V + + R ++ +N+L Y R D E
Sbjct: 65 EDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKE----AQERDLEEVY 120
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
++F + L + ++ LSGG++Q +AIAR ++ +LLLDE + L +
Sbjct: 121 ELFPR-LKERRNQRAGT---------LSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPK 170
Query: 536 --AEI--AIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLL 587
EI AI++ G T++ + + DR VL+NG + G+ +LL
Sbjct: 171 IVEEIFEAIKE--LRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELL 225
>gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding
protein UrtE. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 230
Score = 85.3 bits (212), Expect = 1e-18
Identities = 67/234 (28%), Positives = 106/234 (45%), Gaps = 36/234 (15%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
N++ Y Q H I+ +SL + GE ++GR+G GK+T+ L+ +K G I +DG+
Sbjct: 4 SNLNVYYGQSH-ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGE 62
Query: 423 NISNVS-QESLREQIGMVTQDTSLLHR-SIRDNILYG---RPDASE------CELFNAAK 471
+I+ + E R I V Q + R ++ +N+L G P S ELF
Sbjct: 63 DITKLPPHERARAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPV-- 120
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
L + GR+G D LSGGQ+Q++AIAR ++ +LLLDE T
Sbjct: 121 ----------LKEMLGRRGGD---------LSGGQQQQLAIARALVTRPKLLLLDEPTEG 161
Query: 532 LDSEAEIAIQKSLYNL--MKGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGS 582
+ I + + L G ++ + L DR V++ G V G+
Sbjct: 162 IQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGA 215
>gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 249
Score = 85.7 bits (212), Expect = 1e-18
Identities = 62/208 (29%), Positives = 101/208 (48%), Gaps = 12/208 (5%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK----- 413
K +N+ Y + + +++L I + L+G SG GKST+ L R D+
Sbjct: 3 KFNIENLDLFYGENQ-ALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKI 61
Query: 414 YGEILIDGQNI-SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC 472
G++ +DG++I N+ LR ++GMV Q + SI +N+ YG + +
Sbjct: 62 TGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEV 121
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
E + +L DE + H LSGGQ+QR+ IAR I ++L+DE TSAL
Sbjct: 122 VERSLRGAALWDE-----VKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSAL 176
Query: 533 DSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
D A I++ + L K T++ + H +
Sbjct: 177 DPIATHKIEELMEELKKNYTIVIVTHSM 204
>gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport
systems, ATPase component [Amino acid transport and
metabolism].
Length = 250
Score = 85.7 bits (213), Expect = 1e-18
Identities = 62/224 (27%), Positives = 104/224 (46%), Gaps = 27/224 (12%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESLRE 434
+N++SL ++PGE +GL+G +GAGK+T+ NL+ FY G ++ G++I+ + R
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARL 79
Query: 435 QIGMVTQDTSLLHR-SIRDNILYG-----------RPDASECELFNAAKCAEADIFIKSL 482
I Q T L ++ +N+ G + E A + A + L
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL-DSEAE--IA 539
+ R + LS GQ++R+ IAR + +LLLDE + L E E
Sbjct: 140 GELADRPAGN---------LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAE 190
Query: 540 IQKSLYNLMKGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGS 582
+ + L G T++ I H + + DR++VL+ G V EG+
Sbjct: 191 LIREL-RDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
>gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane
component/ATP-binding component; Provisional.
Length = 547
Score = 89.3 bits (222), Expect = 1e-18
Identities = 63/223 (28%), Positives = 108/223 (48%), Gaps = 17/223 (7%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+ +NV+F+Y + ++LTI+ GE + L+G +G+GKST+ LL Y + GEIL
Sbjct: 322 TLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
+DG+ ++ E R+ V D L + +L + L + +
Sbjct: 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQ-----LLGPEGKPANPAL--------VEKW 428
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
++ L H + D + +KLS GQ++R+A+ + + ILLLDE + D
Sbjct: 429 LERLKMAHKLELEDGRISN--LKLSKGQKKRLALLLALAEERDILLLDEWAADQDPHFRR 486
Query: 539 AIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579
+ L L++ GKT+ AI+H DRL+ + NG ++E
Sbjct: 487 EFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSE 529
>gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 329
Score = 87.1 bits (215), Expect = 1e-18
Identities = 70/228 (30%), Positives = 110/228 (48%), Gaps = 14/228 (6%)
Query: 363 KNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGE 416
+N +F Y ++ ++++L+L I+ + +G SG GKST L + D+ GE
Sbjct: 84 RNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGE 143
Query: 417 ILIDGQNISN--VSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAE 474
I G N + +S LR +IGMV Q + SI DN+ YG + + K E
Sbjct: 144 IYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVE 203
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
+ +L DE + + G LSGGQ+QR+ IAR I +LL+DE TSALD
Sbjct: 204 KSLKSAALWDE-----VKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDP 258
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
A I++ + L K ++I + H ++ + D + G + E G
Sbjct: 259 IATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAG 306
>gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 327
Score = 86.6 bits (215), Expect = 2e-18
Identities = 72/236 (30%), Positives = 117/236 (49%), Gaps = 37/236 (15%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI---SNVSQESL 432
++ +S T++ G+ + +VG SG GKST+ LL GE+ GQ++ +Q+ L
Sbjct: 31 LDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLL 90
Query: 433 REQIGMVTQD--TSLLHRSIRDNILYGRPDASECELFNAAKCAEA-DIFIK-SLTDEHGR 488
R++I +V Q+ SL R IL P L A + +A + K L EH
Sbjct: 91 RQKIQIVFQNPYGSLNPRKKVGQIL-EEPLLINTSLSAAERREKALAMMAKVGLRPEH-- 147
Query: 489 KGYD--AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN 546
YD H+ SGGQRQRIAIAR ++ + +++ DE SALD +++Q + N
Sbjct: 148 --YDRYPHM------FSGGQRQRIAIARALMLDPDVVVADEPVSALD----VSVQAQVLN 195
Query: 547 LMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNGLYSR 595
LM G + + I+H LS + + D ++V+ G E+G+ K +++
Sbjct: 196 LMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT------KEQIFNN 245
>gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease
protein; Provisional.
Length = 648
Score = 88.2 bits (219), Expect = 3e-18
Identities = 66/224 (29%), Positives = 109/224 (48%), Gaps = 23/224 (10%)
Query: 363 KNVSFSY---DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
K++ SY +++ ++ +SL I GE + +VG SG+GKST+ N+L G +
Sbjct: 8 KDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRV 67
Query: 420 DGQNISNVSQESL----REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAE 474
GQ+++ + ++L RE G + Q LL H + N+ A L +
Sbjct: 68 AGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAAQNV---EVPAVYAGLERKQRLLR 124
Query: 475 ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
A + R G + V +LSGGQ+QR++IAR ++ ++L DE T ALDS
Sbjct: 125 AQELL-------QRLGLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDS 177
Query: 535 ---EAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
E +AI L + +G TVI + H + +R+I + +G
Sbjct: 178 HSGEEVMAILHQLRD--RGHTVIIVTHDPQVAAQAERVIEIRDG 219
>gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding
protein. This model represents LolD, a member of the
ABC transporter family (pfam00005). LolD is involved in
localization of lipoproteins in some bacteria. It works
with a transmembrane protein LolC, which in some species
is a paralogous pair LolC and LolE. Depending on whether
the residue immediately following the new, modified
N-terminal Cys residue, the nascent lipoprotein may be
carried further by LolA and LolB to the outer membrane,
or remain at the inner membrane. The top scoring
proteins excluded by this model include homologs from
the archaeal genus Methanosarcina [Protein fate, Protein
and peptide secretion and trafficking].
Length = 221
Score = 83.6 bits (207), Expect = 3e-18
Identities = 61/233 (26%), Positives = 107/233 (45%), Gaps = 40/233 (17%)
Query: 363 KNVSFSYDQKHL---IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+N+ Y + L ++ +SL+I GE + +VG SG+GKST+ +LL + GE+L
Sbjct: 5 ENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLF 64
Query: 420 DGQNISNVSQE---SLR-EQIGMVTQDTSLLHRSIRDNILYGRPDASECE-------LFN 468
+GQ++S +S LR +++G + Q LL PD + E +
Sbjct: 65 NGQSLSKLSSNERAKLRNKKLGFIYQFHHLL------------PDFTALENVAMPLLIGK 112
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
+ + + L + E LSGG+RQR+AIAR ++ ++L DE
Sbjct: 113 KSVKEAKERAYEMLEKVGLEHRINHRPSE----LSGGERQRVAIARALVNQPSLVLADEP 168
Query: 529 TSALDSEAEIAIQKSLYNLM------KGKTVIAIAHRLSTISAMDRLIVLDNG 575
T LD+ K +++LM + + + H L +DR++ + +G
Sbjct: 169 TGNLDNNN----AKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDG 217
>gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding
protein. Members of this protein family are the
ATP-binding subunit of a three-protein transporter. This
family belongs, more broadly, to the family of proline
and glycine-betaine transporters, but members have been
identified by direct characterization and by
bioinformatic means as choline transporters. Many
species have several closely-related members of this
family, probably with variable abilities to act
additionally on related quaternary amines [Transport and
binding proteins, Amino acids, peptides and amines].
Length = 382
Score = 86.4 bits (214), Expect = 3e-18
Identities = 67/226 (29%), Positives = 110/226 (48%), Gaps = 36/226 (15%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI-DG---QNISNVSQES 431
++N SL I+ GE L+G SG+GKST+ + + G +L+ DG +++N +
Sbjct: 40 VHNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAAT 99
Query: 432 LR----EQIGMVTQDTSLLH-RSIRDNI-----LYGRPDASECELFNAAKCAEADIFIKS 481
LR ++ MV Q +LL R++ +N+ + G P A K + + +
Sbjct: 100 LRRLRTHRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAER------RKRVDEQLELVG 153
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
L RK GE LSGG +QR+ +AR APILL+DE SALD +Q
Sbjct: 154 LAQWADRK-----PGE----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQ 204
Query: 542 KSLYNLMK--GKTVIAIAHRLSTISAM---DRLIVLDNGCVAEEGS 582
L L KT++ ++H L A+ +R+ +++ G + + G+
Sbjct: 205 DELLELQSKLKKTIVFVSHDLD--EALKIGNRIAIMEGGRIIQHGT 248
>gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein;
Provisional.
Length = 267
Score = 84.4 bits (209), Expect = 4e-18
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 13/203 (6%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD-IKY----GEI 417
K++ Y +K I + + + + L+G SG+GKST L R D I G+I
Sbjct: 24 KDLHVYYGKKE-AIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQI 82
Query: 418 LIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
L G +I ++ +R+ IGMV Q + +SI +NI + A + + E
Sbjct: 83 LYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVET 142
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ +L D+ + + + LSGGQ+QR+ IAR I ILL+DE SALD
Sbjct: 143 SLKQAALWDQVKDD-----LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPI 197
Query: 536 AEIAIQKSLYNLMKGKTVIAIAH 558
+ + ++++++ L K T+I + H
Sbjct: 198 STMQLEETMFELKKNYTIIIVTH 220
>gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase
component [Amino acid transport and metabolism].
Length = 256
Score = 84.0 bits (208), Expect = 4e-18
Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 53/239 (22%)
Query: 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI----KYGEILIDGQNISNVS 428
H ++ +SL G+ I ++G SG+GKST LR + G I ++G+ I
Sbjct: 19 HEVLKGVSLQANAGDVISIIGSSGSGKST----FLRCINFLEKPSAGSIRVNGEEIRLKR 74
Query: 429 Q-------------ESLREQIGMVTQDTSLL-HRSIRDNILYG--------RPDASECEL 466
+ LR ++GMV Q +L H ++ +N++ + +A E
Sbjct: 75 DKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIE--- 131
Query: 467 FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
A+ ++ + Y AH LSGGQ+QR+AIAR + ++L D
Sbjct: 132 -------RAEKYLAKVGIAEKADAYPAH-------LSGGQQQRVAIARALAMEPEVMLFD 177
Query: 527 EATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAMD---RLIVLDNGCVAEEG 581
E TSALD E + K + +L + G+T++ + H + A D +I L G + EEG
Sbjct: 178 EPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGF--ARDVSSHVIFLHQGKIEEEG 234
>gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD.
This family represents the NikD subunit of a
multisubunit nickel import ABC transporter complex.
Nickel, once imported, may be used in urease and in
certain classes of hydrogenase and superoxide dismutase.
NikD and NikE are homologous [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 230
Score = 83.2 bits (206), Expect = 5e-18
Identities = 56/236 (23%), Positives = 97/236 (41%), Gaps = 47/236 (19%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKYGEILIDGQNISNVSQE 430
++ +L+L+++ GE + LVG SG+GKS +L GEIL+DG+ + +S
Sbjct: 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR 60
Query: 431 SLREQIGMVTQD-----------------TSLLHRSIRDNILYGRPDASECELFNAAKCA 473
I + Q+ T + R E A
Sbjct: 61 GR--HIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQ---ARALILEA--LEAVGLP 113
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
+ + +K + +LSGG QR+ IA +L P L+ DE T+ LD
Sbjct: 114 DPEEVLKK----------------YPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLD 157
Query: 534 SEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDL 586
+ + K L L + G ++ I H L ++ + D + V+D+G + E G+ ++
Sbjct: 158 VVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERGTVKEI 213
>gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional.
Length = 222
Score = 83.0 bits (205), Expect = 5e-18
Identities = 66/231 (28%), Positives = 104/231 (45%), Gaps = 34/231 (14%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F++VS +Y + ++ ++PGE L G SGAGKST+ L+ G+I
Sbjct: 2 IRFEHVSKAYLGGRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWF 61
Query: 420 DGQNISNVSQES---LREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEA 475
G +I+ + LR QIGM+ QD LL R++ DN+
Sbjct: 62 SGHDITRLKNREVPFLRRQIGMIFQDHHLLMDRTVYDNV-------------------AI 102
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHG---------IKLSGGQRQRIAIARVILKNAPILLLD 526
+ I + + R+ A + + G I+LSGG++QR+ IAR ++ +LL D
Sbjct: 103 PLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLAD 162
Query: 527 EATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAMD-RLIVLDNG 575
E T LD I + + G TV+ H + IS R++ L +G
Sbjct: 163 EPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDG 213
>gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 83.9 bits (207), Expect = 5e-18
Identities = 66/222 (29%), Positives = 107/222 (48%), Gaps = 31/222 (13%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I N+SF YD + I+ +S+ I + ++G SG GKST L R +++ E+ +
Sbjct: 8 IKVNNLSFYYDTQK-ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEVRV 65
Query: 420 DG------QNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYG------RPDASECE 465
+G QNI V+ LR Q+ MV +L S+ DN+ YG RP +
Sbjct: 66 EGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDD 125
Query: 466 LFNAA-KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524
+ +A K A+ L DE K + + + LSGGQ+QR+ IAR + +LL
Sbjct: 126 IVESALKDAD-------LWDEIKHK-----IHKSALDLSGGQQQRLCIARALAVKPKVLL 173
Query: 525 LDEATSALDSEAEIAIQKSLYN--LMKGKTVIAIAHRLSTIS 564
+DE LD A + ++ + + L T++ ++H L +S
Sbjct: 174 MDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVS 215
>gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase
component/photorepair protein PhrA [Inorganic ion
transport and metabolism].
Length = 257
Score = 83.5 bits (207), Expect = 6e-18
Identities = 59/236 (25%), Positives = 97/236 (41%), Gaps = 38/236 (16%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I KNVS I+ +LS + PGE +VG +GAGK+T+ +LL + G++ +
Sbjct: 32 IELKNVSVRR-NGKKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTL 90
Query: 420 DGQNISNVS-QESLREQIGMVTQDTSLLHR-----SIRDNIL----------YGRPDASE 463
G+ LR++IG+V + L R ++RD +L A +
Sbjct: 91 LGRRFGKGETIFELRKRIGLV--SSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 464 CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523
AA+ + K L D LS G+++R+ IAR ++K+ +L
Sbjct: 149 ---LAAAQWLLELLGAKHLADRPFGS------------LSQGEQRRVLIARALVKDPELL 193
Query: 524 LLDEATSALDSEAEIAIQKSLYNLM---KGKTVIAIAHRLSTISA-MDRLIVLDNG 575
+LDE LD A + L L ++ + H I ++L G
Sbjct: 194 ILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEG 249
>gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 213
Score = 82.6 bits (204), Expect = 6e-18
Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 38/223 (17%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY---GEILI 419
KNVS ++ N++ TI GE + L+G SG GKST+ + ++ ++ GE+ +
Sbjct: 6 KNVSLRLPG-SCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWL 64
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIF 478
+ Q + + + QIG++ QD L H S+ N+L+ P
Sbjct: 65 NEQRLDMLPAA--QRQIGILFQDALLFPHLSVGQNLLFALPA------------------ 104
Query: 479 IKSLTDEHGRKGYDAHVGEHGI---------KLSGGQRQRIAIARVILKNAPILLLDEAT 529
+L R +A + G+ LSGGQR R+A+ R +L LLLDE
Sbjct: 105 --TLKGNARRNAANAALERSGLDGAFHQDPATLSGGQRARVALLRALLAQPKALLLDEPF 162
Query: 530 SALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLI 570
S LD ++ +++ ++ G + + H L + A R+I
Sbjct: 163 SRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPAGSRVI 205
>gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 257
Score = 83.6 bits (206), Expect = 6e-18
Identities = 71/235 (30%), Positives = 113/235 (48%), Gaps = 35/235 (14%)
Query: 367 FSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST---INNLLLRFYDIKY---GEILID 420
+ Y I+ ++++ I G++G SG+GKST + N L+ YD K G++L
Sbjct: 17 YLYINDKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYF 76
Query: 421 GQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILY-----GRPDASECELFNAAKCAE 474
G++I + LR+++GMV Q + H SI DNI Y G + E
Sbjct: 77 GKDIFQIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKRE----------- 125
Query: 475 ADIFIKSLTDEHGRKG------YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
IK + +E RK YD + +LSGGQ+QR+ IAR + +LL+DE
Sbjct: 126 ----IKKIVEECLRKVGLWKEVYD-RLNSPASQLSGGQQQRLTIARALALKPKVLLMDEP 180
Query: 529 TSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
TS +D AI+K + L ++ ++H ++ + D + L NG + E GS
Sbjct: 181 TSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGS 235
>gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase
component [General function prediction only].
Length = 243
Score = 83.0 bits (206), Expect = 7e-18
Identities = 54/192 (28%), Positives = 98/192 (51%), Gaps = 19/192 (9%)
Query: 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
+ +N++ SY ++ ++N++SL + GE +GL+G +GAGK+T +++ G+
Sbjct: 2 MSTLVAENLAKSYKKRK-VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGK 60
Query: 417 ILIDGQNISNVS-QESLREQIGMVTQDTSLLHR-SIRDNIL----YGRPDASECELFNAA 470
IL+D ++I+ + + R IG + Q+ S+ + ++ DNI+ D + E
Sbjct: 61 ILLDDEDITKLPMHKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAE----- 115
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+ E D ++ H R LSGG+R+R+ IAR + N +LLDE +
Sbjct: 116 RKEELDALLEEFHITHLRDSK-------AYSLSGGERRRVEIARALAANPKFILLDEPFA 168
Query: 531 ALDSEAEIAIQK 542
+D A I IQ+
Sbjct: 169 GVDPIAVIDIQR 180
>gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and
permease components [Secondary metabolites biosynthesis,
transport, and catabolism / Inorganic ion transport and
metabolism].
Length = 546
Score = 86.8 bits (215), Expect = 7e-18
Identities = 68/235 (28%), Positives = 107/235 (45%), Gaps = 19/235 (8%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+ +NV F+Y + ++LTI+ GE + L+G +G+GKST+ LL Y + GEIL
Sbjct: 322 TLELRNVRFAYQDNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
+DG+ +S E R+ V D L D +L AS + +
Sbjct: 382 LDGKPVSAEQLEDYRKLFSAVFSDYHLF-----DQLLGPEGKASP---------QLIEKW 427
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
++ L H D +KLS GQ++R+A+ +L+ IL+LDE + D
Sbjct: 428 LQRLELAHKTSLNDGRFSN--LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRR 485
Query: 539 AIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNG-CVAEEGSHLDLLKKN 590
+ L L+K GKT+ AI+H DRL+ + NG G D ++
Sbjct: 486 EFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDETARD 540
>gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component
[Amino acid transport and metabolism].
Length = 242
Score = 82.6 bits (204), Expect = 9e-18
Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 25/236 (10%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I ++ Y H + +++L GE + L+G SGAGKS++ +L + G + I
Sbjct: 3 IQLNGINCFYGA-HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNI 61
Query: 420 DGQ--NISNVSQE----SLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAK- 471
G + S + LR +GMV Q +L H ++++N++ + C + +K
Sbjct: 62 AGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLI-----EAPCRVLGLSKD 116
Query: 472 --CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529
A A+ +K L + Y H LSGGQ+QR+AIAR ++ +LL DE T
Sbjct: 117 QALARAEKLLKRLRLKPYADRYPLH-------LSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 530 SALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSH 583
+ALD E I + L + G T + + H + R++ ++NG + E+G
Sbjct: 170 AALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDA 225
>gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid
transporters, subfamily A. The ABCA subfamily mediates
the transport of a variety of lipid compounds. Mutations
of members of ABCA subfamily are associated with human
genetic diseases, such as, familial high-density
lipoprotein (HDL) deficiency, neonatal surfactant
deficiency, degenerative retinopathies, and congenital
keratinization disorders. The ABCA1 protein is involved
in disorders of cholesterol transport and high-density
lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein
transports vitamin A derivatives in the outer segments
of photoreceptor cells, and therefore, performs a
crucial step in the visual cycle. The ABCA genes are not
present in yeast. However, evolutionary studies of ABCA
genes indicate that they arose as transporters that
subsequently duplicated and that certain sets of ABCA
genes were lost in different eukaryotic lineages.
Length = 220
Score = 81.8 bits (203), Expect = 1e-17
Identities = 57/221 (25%), Positives = 108/221 (48%), Gaps = 23/221 (10%)
Query: 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL 432
+++LSL + GE GL+G +GAGK+T +L G I+G +I +++
Sbjct: 15 KPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRT-DRKAA 73
Query: 433 REQIGMVTQDTSLLHR-SIRDNI-----LYGRPDASECELFNAAKCAEADIFIKSLTDEH 486
R+ +G Q +L ++R+++ L G P + + E + + LTD+
Sbjct: 74 RQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSE------IKEEVELLLRVLGLTDKA 127
Query: 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN 546
++ LSGG ++++++A ++ +LLLDE TS LD + AI +
Sbjct: 128 NKR-----ART----LSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILE 178
Query: 547 LMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDL 586
+ KG+++I H + A+ DR+ ++ +G + GS +L
Sbjct: 179 VRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
>gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein;
Provisional.
Length = 623
Score = 86.1 bits (213), Expect = 1e-17
Identities = 67/219 (30%), Positives = 107/219 (48%), Gaps = 25/219 (11%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ---ESL 432
+ +S + PGE + LVG SG+GKST LLR + + GEI+ +GQ I +S ++L
Sbjct: 340 VEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQAL 399
Query: 433 REQIGMVTQD--TSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
R I + QD SL R ++ D+I+ + A + L + G
Sbjct: 400 RRDIQFIFQDPYASLDPRQTVGDSIM------EPLRVHGLLPGKAAAARVAWLLERVGLL 453
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM- 548
H + + SGGQRQRI IAR + N +++ DEA SALD ++I+ + NL+
Sbjct: 454 --PEHAWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALD----VSIRGQIINLLL 507
Query: 549 -----KGKTVIAIAHRLSTISAMD-RLIVLDNGCVAEEG 581
G + I+H ++ + + R+ V+ G + E G
Sbjct: 508 DLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546
Score = 72.6 bits (178), Expect = 2e-13
Identities = 69/252 (27%), Positives = 112/252 (44%), Gaps = 51/252 (20%)
Query: 364 NVSFSYDQKHL-IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
N++F +Q+ + + NLS ++Q GE + +VG SG+GKS L+R + G + D
Sbjct: 19 NIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKM 78
Query: 423 NISNVSQE--SLREQ------------IGMVTQD--TSL---------LHRSIRDNILYG 457
+ S++ L EQ + M+ Q+ TSL + SIR +
Sbjct: 79 LLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGAS 138
Query: 458 RPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517
R +A EA K + D+ + + +LSGG RQR+ IA +
Sbjct: 139 REEA----------MVEA----KRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALS 184
Query: 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLMK------GKTVIAIAHRLSTISAM-DRLI 570
+L+ DE T+ALD + IQ + L+K VI I H + ++ + DR++
Sbjct: 185 CRPAVLIADEPTTALD----VTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVL 240
Query: 571 VLDNGCVAEEGS 582
V+ G E GS
Sbjct: 241 VMYQGEAVETGS 252
>gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit;
Provisional.
Length = 255
Score = 81.7 bits (202), Expect = 2e-17
Identities = 60/185 (32%), Positives = 97/185 (52%), Gaps = 20/185 (10%)
Query: 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437
+++LT++ GE + ++G SG GK+T+ NL+ F ++G I +DG+ + E G
Sbjct: 19 DINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGPGAER-----G 73
Query: 438 MVTQDTSLLH-RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVG 496
+V Q+ LL R+++DN+ +G +L K + + + G +G +
Sbjct: 74 VVFQNEGLLPWRNVQDNVAFG------LQLAGVEK-MQRLEIAHQMLKKVGLEGAEKRY- 125
Query: 497 EHGI-KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTV 553
I +LSGGQRQR+ IAR + N +LLLDE ALD+ +Q L L + GK V
Sbjct: 126 ---IWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQV 182
Query: 554 IAIAH 558
+ I H
Sbjct: 183 LLITH 187
>gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 252
Score = 81.6 bits (201), Expect = 3e-17
Identities = 61/218 (27%), Positives = 109/218 (50%), Gaps = 26/218 (11%)
Query: 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK--- 413
N K+ + ++ + + H + ++S+ ++G SG GKST+ + R +D+
Sbjct: 2 NNKVKLEQLNVHFGKNH-AVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSA 60
Query: 414 --YGEILIDGQNISN--VSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFN 468
G+IL+D +I + V S+R ++GMV Q + SI DN++ G +L
Sbjct: 61 RVTGKILLDDTDIYDRGVDPVSIRRRVGMVFQKPNPFPAMSIYDNVIAGY------KLNG 114
Query: 469 AAKCAEADIFIKS------LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI 522
+EAD ++S L DE + + ++LSGGQ+QR+ IAR I +
Sbjct: 115 RVNRSEADEIVESSLKRVALWDE-----VKDRLKSNAMELSGGQQQRLCIARTIAVKPEV 169
Query: 523 LLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
+L+DE SALD + + I++ + L + T+I + H +
Sbjct: 170 ILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNM 207
>gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport
system, ATPase component [Carbohydrate transport and
metabolism / Cell envelope biogenesis, outer membrane].
Length = 249
Score = 81.1 bits (201), Expect = 4e-17
Identities = 62/255 (24%), Positives = 108/255 (42%), Gaps = 43/255 (16%)
Query: 338 LSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGA 397
+SKK++I Y+ K + ++ + + ++S I GE++G++G +GA
Sbjct: 9 VSKKFRI---YHEKSYSL-KKRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGA 64
Query: 398 GKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI-LY 456
GKST+ L+ Y G++ + G+ ++ + + G + T R+NI L
Sbjct: 65 GKSTLLKLIAGIYKPTSGKVKVTGK-VAPL----IELGAGFDPELTG------RENIYLR 113
Query: 457 GRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIK----LSGGQRQRIAI 512
G L E D + + + A +G+ + S G R+A
Sbjct: 114 G--------LILGLTRKEIDEKVDEIIEF-------AELGDFIDQPVKTYSSGMYARLAF 158
Query: 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM----KGKTVIAIAHRLSTISAM-D 567
+ ILLLDE + D+ +K L L K KT++ ++H L I D
Sbjct: 159 SVATHVEPDILLLDEVLAVGDAA---FQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCD 215
Query: 568 RLIVLDNGCVAEEGS 582
R I L++G + EGS
Sbjct: 216 RAIWLEHGQIRMEGS 230
>gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport
system. The ABC transporters belonging to the YhbG
family are similar to members of the Mj1267_LivG family,
which is involved in the transport of branched-chain
amino acids. The genes yhbG and yhbN are located in a
single operon and may function together in cell envelope
during biogenesis. YhbG is the putative ATP-binding
cassette component and YhbN is the putative
periplasmic-binding protein. Depletion of each gene
product leads to growth arrest, irreversible cell damage
and loss of viability in E. coli. The YhbG homolog
(NtrA) is essential in Rhizobium meliloti, a symbiotic
nitrogen-fixing bacterium.
Length = 232
Score = 80.3 bits (199), Expect = 4e-17
Identities = 69/220 (31%), Positives = 117/220 (53%), Gaps = 24/220 (10%)
Query: 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN--VSQ 429
K ++N +SL+++ GE +GL+G +GAGK+T +++ G+IL+DGQ+I+ + +
Sbjct: 12 KRKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHK 71
Query: 430 ESLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDE--- 485
+ R IG + Q+ S+ + ++ +NIL + E+ +K E + ++ L +E
Sbjct: 72 RA-RLGIGYLPQEASIFRKLTVEENIL------AVLEIRGLSK-KEREEKLEELLEEFHI 123
Query: 486 -HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSL 544
H RK LSGG+R+R+ IAR + N LLLDE + +D A IQK +
Sbjct: 124 THLRKSK-------ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKII 176
Query: 545 YNLM-KGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGS 582
L +G V+ H + T+S DR ++ G V EG+
Sbjct: 177 KILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGT 216
>gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 286
Score = 81.4 bits (201), Expect = 5e-17
Identities = 67/249 (26%), Positives = 128/249 (51%), Gaps = 32/249 (12%)
Query: 359 KIFFKNVSFSYDQ----KHLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFY 410
I F NVS++Y + +H I++++ + G+ +VG++G+GKST IN LL
Sbjct: 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALL---- 57
Query: 411 DIKYGEILIDGQNISNVSQES----LREQIGMVTQ--DTSLLHRSIRDNILYGRPDASEC 464
G + +D I++ +++ +R++IGMV Q ++ L ++ I++G P +
Sbjct: 58 KPTTGTVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG-PKNFKM 116
Query: 465 ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG-IKLSGGQRQRIAIARVILKNAPIL 523
L A + L D G+ V ++SGGQ ++IAI ++ N I+
Sbjct: 117 NLDEVKNYA-----HRLLMD----LGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDII 167
Query: 524 LLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEE 580
+LDE T+ LD +++ + + L +L + KT+I ++H ++ ++ D +IV+ G + +
Sbjct: 168 VLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQ 227
Query: 581 GSHLDLLKK 589
S +L K
Sbjct: 228 TSPKELFKD 236
>gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 277
Score = 81.0 bits (200), Expect = 6e-17
Identities = 64/238 (26%), Positives = 114/238 (47%), Gaps = 15/238 (6%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+++ +SY +NN++ +I ++G +GAGKST+ G +LI G+
Sbjct: 7 RDLCYSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGE 66
Query: 423 NISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
I+ + +R+ +G+V Q D + ++ +I +G + E A + + A +
Sbjct: 67 PITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA---LH 123
Query: 481 SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAI 540
L E R H LSGG+++R+AIA VI +L+LDE T+ LD + +
Sbjct: 124 MLGLEELRDRVPHH-------LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 541 QKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNGLYSR 595
L +L + G TVI H+L + M D + V+D G + G+ ++ + L +R
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQPDLLAR 234
>gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding
subunit; Provisional.
Length = 265
Score = 80.6 bits (199), Expect = 7e-17
Identities = 76/248 (30%), Positives = 118/248 (47%), Gaps = 39/248 (15%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+NVSF + L+ + LSLT G+ GL+G +G+GKST+ +L R GEIL+D Q
Sbjct: 15 RNVSFRVPGRTLL-HPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 423 NISNVSQESLREQIGMVTQDTSLLH-RSIRDNILYGR-PDASECELFNAA---KCAEA-- 475
+ + S ++ ++ + Q ++R+ + GR P F AA K EA
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133
Query: 476 ----DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
L D LSGG+RQR IA ++ +++ LLLDE TSA
Sbjct: 134 LVGLKPLAHRLVDS----------------LSGGERQRAWIAMLVAQDSRCLLLDEPTSA 177
Query: 532 LDSEAEIAIQKSLYNLM------KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHL 584
LD IA Q + L+ +G TVIA+ H ++ + D L+ L G + +G+
Sbjct: 178 LD----IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPA 233
Query: 585 DLLKKNGL 592
+L++ L
Sbjct: 234 ELMRGETL 241
>gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system,
permease and ATPase components [General function
prediction only].
Length = 604
Score = 83.5 bits (207), Expect = 8e-17
Identities = 58/207 (28%), Positives = 94/207 (45%), Gaps = 27/207 (13%)
Query: 357 NGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
+ I +N+S +++ L+ ++PGE++ + G SGAGK+++ L + G
Sbjct: 390 DHGITLENLSLRTPDGQTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGR 449
Query: 417 ILI-DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGR--PDASECELFNA-AKC 472
I + + + Q Q ++R+ + Y PD S+ EL K
Sbjct: 450 ISMPADSALLFLPQRPYLPQ------------GTLREALCYPNAAPDFSDAELVAVLHKV 497
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
D + L DE R LSGG++QR+A AR++L + LDEATSAL
Sbjct: 498 GLGD-LAERL-DEEDR---------WDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546
Query: 533 DSEAEIAIQKSLYNLMKGKTVIAIAHR 559
D E E + + L + TVI++ HR
Sbjct: 547 DEETEDRLYQLLKEELPDATVISVGHR 573
>gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding
protein; Provisional.
Length = 241
Score = 79.9 bits (197), Expect = 8e-17
Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 20/232 (8%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
KN++ +Y + ++ ++SLT+ GE +GL+G +GAGK+T +++ G I+ID +
Sbjct: 7 KNLAKAYKGRR-VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDE 65
Query: 423 NISNVS-QESLREQIGMVTQDTSLLHR-SIRDN---ILYGRPDASECELFNAAKCAEADI 477
+IS + R IG + Q+ S+ R S+ DN +L R D S + + A +
Sbjct: 66 DISLLPLHARARRGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF 125
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
I+ L D G+ LSGG+R+R+ IAR + N +LLDE + +D +
Sbjct: 126 HIEHLRDSMGQS------------LSGGERRRVEIARALAANPKFILLDEPFAGVDPISV 173
Query: 538 IAIQKSLYNLM-KGKTVIAIAHRL-STISAMDRLIVLDNGCVAEEGSHLDLL 587
I I++ + +L G V+ H + T++ +R ++ G + G+ ++L
Sbjct: 174 IDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEIL 225
>gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 287
Score = 80.6 bits (199), Expect = 8e-17
Identities = 67/237 (28%), Positives = 112/237 (47%), Gaps = 39/237 (16%)
Query: 360 IFFKNVSFSY------DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTI----NNLLLRF 409
I F+NV + Y ++K L N+S ++ G + LVG +G+GKST+ N LL
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLD--NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKP- 59
Query: 410 YDIKYGEILIDGQNI----SNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPD--A 461
G I I G +I N + + LR+++ +V Q + L ++ ++ +G +
Sbjct: 60 ---SSGTITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGF 116
Query: 462 SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG-IKLSGGQRQRIAIARVILKNA 520
SE E A ++K + G + +LSGGQ +R+AIA V+
Sbjct: 117 SEDEAKEKAL-----KWLK-------KVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEP 164
Query: 521 PILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA-MDRLIVLDNG 575
IL LDE + LD E + + + K G TVI + H + ++ D ++VL++G
Sbjct: 165 EILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221
>gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter
subunit; Provisional.
Length = 257
Score = 80.0 bits (197), Expect = 9e-17
Identities = 66/240 (27%), Positives = 108/240 (45%), Gaps = 40/240 (16%)
Query: 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-- 429
+H ++ +SL G+ I ++G SG+GKST + G I+++GQ I+ V
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 430 -----------ESLREQIGMVTQDTSLL-HRSIRDNIL--------YGRPDASECELFNA 469
LR ++ MV Q +L H ++ +N++ + +A E +
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYL 136
Query: 470 AKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529
AK DE + Y H LSGGQ+QR++IAR + +LL DE T
Sbjct: 137 AKVG---------IDERAQGKYPVH-------LSGGQQQRVSIARALAMEPEVLLFDEPT 180
Query: 530 SALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLL 587
SALD E + + + L +GKT++ + H + + +I L G + EEG+ L
Sbjct: 181 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLF 240
>gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 246
Score = 80.1 bits (197), Expect = 9e-17
Identities = 58/205 (28%), Positives = 102/205 (49%), Gaps = 18/205 (8%)
Query: 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY---GEILID 420
N++ Y +K + + +++ I+ + L+G SG GKST R D G + I+
Sbjct: 7 NLNLFYGKKQALFD-INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIE 65
Query: 421 GQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI-----LYGRPDASECELFNAAKCAEA 475
G+++ N +LR+ +GMV Q ++ +SI +NI L+G + E C +
Sbjct: 66 GKDVKNQDVVALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQK 125
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
+ + D+ + ++ + LSGGQ+QR+ IAR + +LLLDE TSALD
Sbjct: 126 VGLFEEVKDK---------LKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPI 176
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRL 560
+ I++ L L ++I + H +
Sbjct: 177 SSGVIEELLKELSHNLSMIMVTHNM 201
>gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 274
Score = 80.2 bits (198), Expect = 1e-16
Identities = 70/249 (28%), Positives = 120/249 (48%), Gaps = 33/249 (13%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF---YDIKYGE 416
I +++ F Y + LSL+I G K L+G +GAGKST LLL Y + G
Sbjct: 5 IEVEDLHFRYKDGTKALKGLSLSIPEGSKTALLGPNGAGKST---LLLHLNGIYLPQRGR 61
Query: 417 ILIDGQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYG----RPDASECELFNAA 470
+ + G+ ++ +++ +R ++G+V Q D + ++ D++ +G D E E
Sbjct: 62 VKVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVE--RRV 119
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+ A + + D + Y H LS GQ++R+AIA V+ + +++LDE +
Sbjct: 120 EEALKAVRMWDFRD---KPPY--H-------LSYGQKKRVAIAGVLAMDPDVIVLDEPMA 167
Query: 531 ALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEG-----SH 583
LD + + + L L GKTVI H + D++IVL G V EG +
Sbjct: 168 YLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLTD 227
Query: 584 LDLLKKNGL 592
D++++ GL
Sbjct: 228 EDIVEQAGL 236
>gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of
polysaccharide transport system. The KpsT/Wzt ABC
transporter subfamily is involved in extracellular
polysaccharide export. Among the variety of
membrane-linked or extracellular polysaccharides
excreted by bacteria, only capsular polysaccharides,
lipopolysaccharides, and teichoic acids have been shown
to be exported by ABC transporters. A typical system is
made of a conserved integral membrane and an ABC. In
addition to these proteins, capsular polysaccharide
exporter systems require two 'accessory' proteins to
perform their function: a periplasmic (E.coli) or a
lipid-anchored outer membrane protein called OMA
(Neisseria meningitidis and Haemophilus influenza) and a
cytoplasmic membrane protein MPA2.
Length = 224
Score = 79.1 bits (196), Expect = 1e-16
Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 39/251 (15%)
Query: 338 LSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGA 397
+SK Y Y + I + + + ++S + GE+IGL+GR+GA
Sbjct: 6 VSKSYPT---YKGGSSSLKKLGILGRKGE---VGEFWALKDVSFEVPRGERIGLIGRNGA 59
Query: 398 GKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI--- 454
GKST+ LL Y G + + G+ +S++ L G + L + R+NI
Sbjct: 60 GKSTLLRLLAGIYPPDSGTVTVRGR-VSSL----LGLGGGF---NPEL---TGRENIYLN 108
Query: 455 --LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAI 512
L G E + I + E G D V S G + R+A
Sbjct: 109 GRLLGLSRKEIDEKID---------EIIEFS-ELGDF-IDLPVKT----YSSGMKARLAF 153
Query: 513 ARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAM-DRLI 570
A ILL+DE + D+ + Q+ L L+K GKTVI ++H S+I + DR +
Sbjct: 154 AIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRAL 213
Query: 571 VLDNGCVAEEG 581
VL+ G + +G
Sbjct: 214 VLEKGKIRFDG 224
>gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 250
Score = 79.6 bits (196), Expect = 1e-16
Identities = 70/236 (29%), Positives = 113/236 (47%), Gaps = 24/236 (10%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY---- 414
KI +++ S+ Q +++ ++L I L+G SG+GKST+ + R ++
Sbjct: 3 KIEIRDLKVSFGQVE-VLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARV 61
Query: 415 -GEILIDGQNISNVSQESLREQIGMVTQ-DTSLLHRSIRDNILYG----RPDASECELFN 468
GE+ +DGQ+I + LR ++ MV Q + + SI +N+ G R S+ EL
Sbjct: 62 SGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQE 121
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
+ A K+ + + DA G KLSGGQ+QR+ IAR + +LL DE
Sbjct: 122 RVRWA----LEKAQLWDEVKDRLDAPAG----KLSGGQQQRLCIARALAFQPEVLLADEP 173
Query: 529 TSALDSEAEIAIQKSLYNLMKGKTVIAIAH---RLSTISAMDRLIVLDNGCVAEEG 581
T+ LD E I+ L K T++ + H + + IS D + L G + E G
Sbjct: 174 TANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARIS--DYVAFLYKGQIVEWG 227
>gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 352
Score = 81.6 bits (202), Expect = 1e-16
Identities = 60/207 (28%), Positives = 95/207 (45%), Gaps = 27/207 (13%)
Query: 385 PGEKI-GLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI----SNVSQESLREQIGMV 439
P I L G SG+GK+++ N++ G I ++G+ + + + +IG V
Sbjct: 22 PARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYV 81
Query: 440 TQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEH 498
QD L H ++R N+ YG + A+ D + L EH Y
Sbjct: 82 FQDARLFPHYTVRGNLRYGMWKSMR---------AQFDQLVALLGIEHLLDRYP------ 126
Query: 499 GIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAI-- 556
LSGG++QR+AI R +L +LL+DE ++LD + I L L + I I
Sbjct: 127 -GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD-EINIPILY 184
Query: 557 -AHRLSTISAM-DRLIVLDNGCVAEEG 581
+H L + + DR++VL+NG V G
Sbjct: 185 VSHSLDEVLRLADRVVVLENGKVKASG 211
>gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the
sulfonylurea receptor, subfamily C. The SUR domain 1.
The sulfonylurea receptor SUR is an ATP transporter of
the ABCC/MRP family with tandem ATPase binding domains.
Unlike other ABC proteins, it has no intrinsic transport
function, neither active nor passive, but associates
with the potassium channel proteins Kir6.1 or Kir6.2 to
form the ATP-sensitive potassium (K(ATP)) channel.
Within the channel complex, SUR serves as a regulatory
subunit that fine-tunes the gating of Kir6.x in response
to alterations in cellular metabolism. It constitutes a
major pharmaceutical target as it binds numerous drugs,
K(ATP) channel openers and blockers, capable of up- or
down-regulating channel activity.
Length = 218
Score = 78.9 bits (194), Expect = 1e-16
Identities = 59/217 (27%), Positives = 108/217 (49%), Gaps = 15/217 (6%)
Query: 367 FSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISN 426
FS+ ++N+++ I G+ +VG+ G GKS++ +L G++ +N S
Sbjct: 8 FSWGSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESE 67
Query: 427 VSQESL----REQIGMVTQDTSLLHRSIRDNILYGRP-DASECELFNAAKCAEADIFIKS 481
S E+ R + Q LL+ ++ +NI +G P + + A + DI +
Sbjct: 68 PSFEATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLP 127
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE-AEIAI 540
D+ +GE GI LSGGQRQRI +AR + +N I+ LD+ SALD ++ +
Sbjct: 128 FGDQ-------TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLM 180
Query: 541 QKSLYNLMKG--KTVIAIAHRLSTISAMDRLIVLDNG 575
Q+ + ++ +T++ + H+L + D +I + +G
Sbjct: 181 QEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDG 217
>gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 265
Score = 79.7 bits (196), Expect = 2e-16
Identities = 66/221 (29%), Positives = 107/221 (48%), Gaps = 29/221 (13%)
Query: 356 TNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI--- 412
T K ++F Y + + N+++ + + L+G SG GKST R +D+
Sbjct: 13 TQQKSEVNKLNFYYG-GYQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPG 71
Query: 413 -KY-GEILIDGQNISNVSQE----SLREQIGMVTQDTSLLHRSIRDNILYG-------RP 459
Y GEI++ N++ +S E +R +I MV Q + +SI +N+ YG R
Sbjct: 72 NHYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRR 131
Query: 460 DASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN 519
E + NA + A +L DE +G+ LSGGQ+QR+ IAR + +
Sbjct: 132 SILEERVENALRNA-------ALWDE-----VKDRLGDLAFNLSGGQQQRLCIARALATD 179
Query: 520 APILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
ILL DE TSALD A +I++ + +L T++ + H +
Sbjct: 180 PEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNM 220
>gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 286
Score = 79.9 bits (197), Expect = 2e-16
Identities = 57/181 (31%), Positives = 90/181 (49%), Gaps = 12/181 (6%)
Query: 391 LVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNI--SNVSQESLREQIGMVTQDT 443
++G SG GKST + R D+ G ++ DG++I + LR++IGMV Q
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQKP 129
Query: 444 SLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLS 503
+ +SI DNI YG + + E + +L DE + + ++ + LS
Sbjct: 130 NPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDR-----LDKNALGLS 184
Query: 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTI 563
GGQ+QR+ +AR + ILLLDE TSALD +A I+ + L T++ + H +
Sbjct: 185 GGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQA 244
Query: 564 S 564
S
Sbjct: 245 S 245
>gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter,
ATP-binding protein. This ABC transporter ATP-binding
protein is found in a number of genomes in operon-like
contexts strongly suggesting a substrate specificity for
2-aminoethylphosphonate (2-AEP). The characterized
PhnSTUV system is absent in the genomes in which this
system is found. These genomes encode systems for the
catabolism of 2-AEP, making the need for a
2-AEP-specific transporter likely [Transport and binding
proteins, Amino acids, peptides and amines].
Length = 353
Score = 80.9 bits (200), Expect = 2e-16
Identities = 66/225 (29%), Positives = 110/225 (48%), Gaps = 42/225 (18%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKYGEILIDGQNISNVSQE 430
+ ++SL+++ GE + L+G SG GK+T LLR G I G++I+ + +
Sbjct: 19 ALKDISLSVKKGEFVCLLGPSGCGKTT----LLRIIAGLERQTAGTIYQGGRDITRLPPQ 74
Query: 431 SLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECELFNAAKCAEADIFIKSLTDE 485
+ G+V Q +L + ++ DNI YG +E A + AE + L
Sbjct: 75 --KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEV----AERVAELLDLV-GLPGS 127
Query: 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA------EI- 538
+ Y +LSGGQ+QR+A+AR + + +LLLDE SALD+ EI
Sbjct: 128 ERK--YPG-------QLSGGQQQRVALARALATSPGLLLLDEPLSALDARVREHLRTEIR 178
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
+Q+ L G T I + H +M DR++V+++G + + G+
Sbjct: 179 QLQRRL-----GVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGT 218
>gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 274
Score = 79.7 bits (196), Expect = 2e-16
Identities = 61/198 (30%), Positives = 97/198 (48%), Gaps = 14/198 (7%)
Query: 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-----KYGEILIDGQNI--SN 426
L + ++ L I + I +G SG GKST+ R D+ G +L +NI S
Sbjct: 34 LALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93
Query: 427 VSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEH 486
++ LR Q+GMV Q + +SI +NI + P A+ + N + E + ++ +E
Sbjct: 94 INSVKLRRQVGMVFQRPNPFPKSIYENIAFA-PRANGYK-GNLDELVEDSLRRAAIWEEV 151
Query: 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN 546
K + E G LSGGQ+QR+ IAR I +LL+DE SALD + +++
Sbjct: 152 KDK-----LKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLE 206
Query: 547 LMKGKTVIAIAHRLSTIS 564
L + T+I + H + S
Sbjct: 207 LKEQYTIIMVTHNMQQAS 224
>gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit;
Provisional.
Length = 351
Score = 80.9 bits (200), Expect = 2e-16
Identities = 69/236 (29%), Positives = 123/236 (52%), Gaps = 27/236 (11%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
KN++ + + +I+NL+LTI+ G + L+G SG GK+T+ L+ G+I IDG+
Sbjct: 10 KNITKRFG-SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGE 68
Query: 423 NISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG-----RPDASECELFNAAKCAEAD 476
++++ S + + I MV Q +L H S+ +N+ YG P + EA
Sbjct: 69 DVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEER-----KQRVKEA- 120
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
L D G + D +V + +SGGQ+QR+A+AR ++ +LL DE S LD+
Sbjct: 121 ---LELVDLAGFE--DRYVDQ----ISGGQQQRVALARALILKPKVLLFDEPLSNLDANL 171
Query: 537 EIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKK 589
++++ + L + T + + H S A+ D +IV++ G + + GS +L ++
Sbjct: 172 RRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQ 227
>gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit;
Provisional.
Length = 242
Score = 78.5 bits (194), Expect = 2e-16
Identities = 65/249 (26%), Positives = 112/249 (44%), Gaps = 51/249 (20%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI----KYG 415
I ++ Y H + +++L GE + L+G SGAGKS+ LLR ++ + G
Sbjct: 3 IQLNGINCFYGA-HQALFDITLDCPQGETLVLLGPSGAGKSS----LLRVLNLLEMPRSG 57
Query: 416 EILIDGQNISNVSQE-------SLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELF 467
+ I G + + S+ LR +GMV Q +L H +++ N++
Sbjct: 58 TLNIAGNHF-DFSKTPSDKAIRELRRNVGMVFQQYNLWPHLTVQQNLI------------ 104
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDA---------HVGEHGIKLSGGQRQRIAIARVILK 518
EA + L+ + + + + LSGGQ+QR+AIAR ++
Sbjct: 105 ------EAPCRVLGLSKDQALARAEKLLERLRLKPYADRFPLHLSGGQQQRVAIARALMM 158
Query: 519 NAPILLLDEATSALDSE--AEI-AIQKSLYNLMKGKTVIAIAHRLSTI-SAMDRLIVLDN 574
+LL DE T+ALD E A+I +I + L G T + + H + R++ ++N
Sbjct: 159 EPQVLLFDEPTAALDPEITAQIVSIIRELAE--TGITQVIVTHEVEVARKTASRVVYMEN 216
Query: 575 GCVAEEGSH 583
G + E+G
Sbjct: 217 GHIVEQGDA 225
>gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit;
Provisional.
Length = 353
Score = 80.1 bits (198), Expect = 3e-16
Identities = 64/235 (27%), Positives = 108/235 (45%), Gaps = 39/235 (16%)
Query: 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423
SF Q ++N++SL I G+ + L+G SG+GK+T+ ++ G I G +
Sbjct: 9 KKSFGRTQ---VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTD 65
Query: 424 ISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG--------RPDASECELFNAAKCAE 474
+S + ++G V Q +L H ++ DNI +G RP+A A
Sbjct: 66 VSRLHARD--RKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNA-----------AA 112
Query: 475 ADIFIKSLTD----EHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+ L + H Y A +LSGGQ+QR+A+AR + ILLLDE
Sbjct: 113 IKAKVTQLLEMVQLAHLADRYPA-------QLSGGQKQRVALARALAVEPQILLLDEPFG 165
Query: 531 ALDSEAEIAIQKSLYNL---MKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGS 582
ALD++ +++ L L +K +V + + DR++V+ G + + G+
Sbjct: 166 ALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
>gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit;
Provisional.
Length = 305
Score = 79.0 bits (195), Expect = 4e-16
Identities = 69/264 (26%), Positives = 124/264 (46%), Gaps = 41/264 (15%)
Query: 359 KIFFKNVSFSYDQKHLI----INNLSLTIQPGEKIGLVGRSGAGKST----INNLLL--- 407
+I KN+ +++K ++N+S+ I GE I ++G++G+GK+T +N LLL
Sbjct: 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDT 61
Query: 408 -----RFYDIKYGE--ILIDGQNISNVSQES----------LREQIGMVTQ--DTSLLHR 448
F D K + + V Q++ +R ++G+V Q + L +
Sbjct: 62 GTIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQ 121
Query: 449 SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQ 508
+I +I++G P + A K A I + L + + ++ +LSGGQ++
Sbjct: 122 TIEKDIIFG-PVSMGVSKEEAKKRAAKYIELVGLDESYLQRS--------PFELSGGQKR 172
Query: 509 RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA-M 566
R+A+A ++ L+ DE T+ LD + I + NL K GKT+I + H L +
Sbjct: 173 RVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWT 232
Query: 567 DRLIVLDNGCVAEEGSHLDLLKKN 590
R I +G + ++G D+L N
Sbjct: 233 KRTIFFKDGKIIKDGDTYDILSDN 256
>gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 261
Score = 78.1 bits (192), Expect = 4e-16
Identities = 66/210 (31%), Positives = 100/210 (47%), Gaps = 24/210 (11%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG--- 415
KIF+ N + + + + I+ E G +G SG GKST+ L R D+ G
Sbjct: 15 KIFYGNF--------MAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRF 66
Query: 416 --EILIDGQNI--SNVSQESLREQIGMVTQDTSLLHRSIRDNILYG-RPDASECELFNAA 470
+ GQ++ V +R IGMV Q + SI DN+ +G R + + +L +
Sbjct: 67 EGHVHFLGQDVYGKGVDPVVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRV 126
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
K A + +L DE K + G+ LSGGQ+QR+ IAR I +LLLDE S
Sbjct: 127 KHA---LQGAALWDEVKDK-----LKVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCS 178
Query: 531 ALDSEAEIAIQKSLYNLMKGKTVIAIAHRL 560
ALD A +++ + L K T+ + H +
Sbjct: 179 ALDPIATRRVEELMVELKKDYTIALVTHNM 208
>gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit;
Provisional.
Length = 233
Score = 77.5 bits (191), Expect = 5e-16
Identities = 66/221 (29%), Positives = 108/221 (48%), Gaps = 33/221 (14%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS---QES 431
+++N+S +I GE + +VG SG+GKST+ +LL G+++ +GQ +S +S +
Sbjct: 24 VLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAE 83
Query: 432 LR-EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFI-KSLTDEHGRK 489
LR +++G + Q LL PD F A + + I K E +
Sbjct: 84 LRNQKLGFIYQFHHLL------------PD------FTALENVAMPLLIGKKKPAEINSR 125
Query: 490 GYD--AHVG-EHGIK-----LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
+ A VG EH LSGG+RQR+AIAR ++ N ++L DE T LD+ +I
Sbjct: 126 ALEMLAAVGLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIF 185
Query: 542 KSL--YNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580
+ L N ++G + + H L M R + + +G + E
Sbjct: 186 QLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAE 226
>gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an
uncharacterized transporter. This subgroup is related
to the subfamily A transporters involved in drug
resistance, nodulation, lipid transport, and bacteriocin
and lantibiotic immunity. In eubacteria and archaea, the
typical organization consists of one ABC and one or two
integral membranes. ABC transporters are a large family
of proteins involved in the transport of a wide variety
of different compounds, like sugars, ions, peptides and
more complex organic molecules. The nucleotide binding
domain shows the highest similarity between all members
of the family. ABC transporters are a subset of
nucleotide hydrolases that contain a signature motif,
Q-loop, and H-loop/switch region in addition to the
Walker A motif/P-loop and Walker B motif commonly found
in a number of ATP- and GTP-binding and hydrolyzing
proteins.
Length = 210
Score = 76.2 bits (188), Expect = 8e-16
Identities = 52/228 (22%), Positives = 105/228 (46%), Gaps = 40/228 (17%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+NV+ + + ++++S +++ GE GL+G +GAGK+T ++L GE+L DG
Sbjct: 3 VENVTKRFGRVT-ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDG 61
Query: 422 QNISNVSQESLREQIGMVTQDTSL-LHRSIRDNILY-------GRPDASECELFNAAKCA 473
+ + + R +IG + ++ L + D ++Y + +A
Sbjct: 62 KPL----DIAARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEAR----------R 107
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIK----LSGGQRQRIAIARVILKNAPILLLDEAT 529
D +++ L + E+ K LS G +Q++ ++ + +L+LDE
Sbjct: 108 RIDEWLERL-----------ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPF 156
Query: 530 SALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDNG 575
S LD ++ + L GKTVI H++ + + DR+++L+ G
Sbjct: 157 SGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKG 204
>gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter. This model
describes cyclic peptide transporter in bacteria.
Bacteria have elaborate pathways for the production of
toxins and secondary metabolites. Many such compounds,
including syringomycin and pyoverdine are synthesized on
non-ribosomal templates consisting of a multienzyme
complex. On several occasions the proteins of the
complex and transporter protein are present on the same
operon. Often times these compounds cross the biological
membrane by specific transporters. Syringomycin is an
amphipathic, cylclic lipodepsipeptide when inserted into
host causes formation of channels, permeable to variety
of cations. On the other hand, pyoverdine is a cyclic
octa-peptidyl dihydroxyquinoline, which is efficient in
sequestering iron for uptake [Transport and binding
proteins, Amino acids, peptides and amines, Transport
and binding proteins, Other].
Length = 555
Score = 80.4 bits (198), Expect = 8e-16
Identities = 62/231 (26%), Positives = 100/231 (43%), Gaps = 19/231 (8%)
Query: 356 TNGKIFFKNVSFSY----DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD 411
+ I K+V + + + + L I G+ + +VG +G GKST+ L Y
Sbjct: 334 SVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYI 393
Query: 412 IKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAK 471
+ GEIL+DG +S S++ R+ + D L I PD E A
Sbjct: 394 PQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLI-------GPDEGE-----HAS 441
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
A +++ L K D LS GQ++R+A+ L++ PILL DE +
Sbjct: 442 LDNAQQYLQRLEIADKVKIEDGGFST-TTALSTGQQKRLALICAWLEDRPILLFDEWAAD 500
Query: 532 LDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580
D + + L +K GKT+I I+H D++I L GC+ ++
Sbjct: 501 QDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVKD 551
>gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit;
Provisional.
Length = 506
Score = 79.6 bits (197), Expect = 1e-15
Identities = 62/217 (28%), Positives = 108/217 (49%), Gaps = 25/217 (11%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG----EILIDGQNI--SNVSQ 429
++N+SL ++ GE + L G +GAGKST+ +L Y +G EI+ +G+ + SN+
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY--PHGTYEGEIIFEGEELQASNIR- 77
Query: 430 ESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGR 488
++ R I ++ Q+ +L+ S+ +NI G + A A + L
Sbjct: 78 DTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL------ 131
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
D + L GQ+Q + IA+ + K A +L+LDE T++L +E+E A+ + +
Sbjct: 132 -KLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESETAVLLDIIRDL 189
Query: 549 K--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSH 583
K G I I+H+L+ + A + D CV +G H
Sbjct: 190 KAHGIACIYISHKLNEVKA-----ISDTICVIRDGRH 221
Score = 56.5 bits (137), Expect = 2e-08
Identities = 57/211 (27%), Positives = 103/211 (48%), Gaps = 16/211 (7%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY-GEILIDGQNIS-NVSQESL 432
++++S +++ GE +G+ G GAG++ + L Y ++ GEI IDG+ + Q+++
Sbjct: 277 RVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAI 336
Query: 433 REQIGMVTQDTS----LLHRSIRDNILYGRPD--ASECELFNAAKCAEADIFIKSLTDEH 486
+ I MV +D + + NI D + +AA+ I+ L
Sbjct: 337 AQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL---- 392
Query: 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN 546
K A +LSGG +Q+ +A+ +L N IL+LDE T +D A+ I K +
Sbjct: 393 --KVKTASPELAIARLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQ 450
Query: 547 LMK-GKTVIAIAHRLSTISAM-DRLIVLDNG 575
L++ G +I I+ L + + DR++V+ G
Sbjct: 451 LVQQGVAIIVISSELPEVLGLSDRVLVMHEG 481
>gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family.
Members of this protein family have two copies of the
ABC transporter ATP-binding cassette, but are found
outside the common ABC transporter operon structure that
features integral membrane permease proteins and
substrate-binding proteins encoded next to the
ATP-binding cassette (ABC domain) protein. The member
protein ChvD from Agrobacterium tumefaciens was
identified as both a candidate to interact with VirB8,
based on yeast two-hybrid analysis, and as an apparent
regulator of VirG. The general function of this protein
family is unknown.
Length = 552
Score = 79.2 bits (196), Expect = 2e-15
Identities = 73/243 (30%), Positives = 117/243 (48%), Gaps = 50/243 (20%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
VS K I+ ++SL+ PG KIG++G +GAGKST LLR I G +D +
Sbjct: 8 NRVSKVVPPKKEILKDISLSFFPGAKIGVLGLNGAGKST----LLR---IMAG---VD-K 56
Query: 423 NISNVSQESLREQIGMVTQDTSL-LHRSIRDNILYGRPDASEC-ELFNA--AKCAEADIF 478
+ ++ + ++G + Q+ L +++R+N+ G + + + FN AK AE D
Sbjct: 57 EFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDAD 116
Query: 479 IKSLTDEHGR-----KGYDAHVGEHGI-----------------KLSGGQRQRIAIARVI 516
+ +L E DA + + KLSGG+R+R+A+ R++
Sbjct: 117 MDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCRLL 176
Query: 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGC 576
L +LLLDE T+ LD+E+ +++ L G TV+A+ H DR LDN
Sbjct: 177 LSKPDMLLLDEPTNHLDAESVAWLEQHLQEY-PG-TVVAVTH--------DRYF-LDN-- 223
Query: 577 VAE 579
VA
Sbjct: 224 VAG 226
Score = 43.8 bits (104), Expect = 2e-04
Identities = 18/42 (42%), Positives = 29/42 (69%), Gaps = 1/42 (2%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST 401
I +N+S + K L+I++LS + PG +G++G +GAGKST
Sbjct: 323 IEAENLSKGFGDK-LLIDDLSFKLPPGGIVGVIGPNGAGKST 363
Score = 39.1 bits (92), Expect = 0.006
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 8/67 (11%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAH--- 558
LSGG+R R+ +A+ + +LLLDE T+ LD E A++++L G V+ I+H
Sbjct: 444 LSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF-AGCAVV-ISHDRW 501
Query: 559 ---RLST 562
R++T
Sbjct: 502 FLDRIAT 508
>gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic
fibrosis transmembrane regulator, subfamily C. The CFTR
subfamily domain 1. The cystic fibrosis transmembrane
regulator (CFTR), the product of the gene mutated in
patients with cystic fibrosis, has adapted the ABC
transporter structural motif to form a tightly regulated
anion channel at the apical surface of many epithelia.
Use of the term assembly of a functional ion channel
implies the coming together of subunits, or at least
smaller not-yet functional components of the active
whole. In fact, on the basis of current knowledge only
the CFTR polypeptide itself is required to form an ATP-
and protein kinase A-dependent low-conductance chloride
channel of the type present in the apical membrane of
many epithelial cells. CFTR displays the typical
organization (IM-ABC)2 and carries a characteristic
hydrophilic R-domain that separates IM1-ABC1 from
IM2-ABC2.
Length = 282
Score = 76.8 bits (189), Expect = 2e-15
Identities = 61/225 (27%), Positives = 104/225 (46%), Gaps = 42/225 (18%)
Query: 364 NVSFSYDQKHL--IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
N+ FS ++ N++L I+ GE + + G +G+GK+++ L+L GE+
Sbjct: 39 NLFFSNLCLVGAPVLKNINLKIEKGEMLAITGSTGSGKTSLLMLIL-------GELEPSE 91
Query: 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG--------RPDASECELF-NAAKC 472
I + + S Q + T I++NI++G + C+L + K
Sbjct: 92 GKIKHSGRISFSSQFSWIMPGT------IKENIIFGVSYDEYRYKSVVKACQLEEDITKF 145
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
E D + +GE GI LSGGQR RI++AR + K+A + LLD L
Sbjct: 146 PEKDNTV---------------LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYL 190
Query: 533 D--SEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNG 575
D +E EI + + LM KT I + ++ + D++++L G
Sbjct: 191 DVFTEKEI-FESCVCKLMANKTRILVTSKMEHLKKADKILILHEG 234
>gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette
component of monosaccharide transport system. This
family represents the domain I of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. Pentoses include xylose,
arabinose, and ribose. Important hexoses include
glucose, galactose, and fructose. In members of the
Carb_monos family, the single hydrophobic gene product
forms a homodimer while the ABC protein represents a
fusion of two nucleotide-binding domains. However, it is
assumed that two copies of the ABC domains are present
in the assembled transporter.
Length = 163
Score = 73.6 bits (182), Expect = 2e-15
Identities = 37/97 (38%), Positives = 57/97 (58%), Gaps = 16/97 (16%)
Query: 492 DAHVGEHGI----KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL 547
DA GI +LS G+RQ + IAR + +NA +L+LDE T+AL + AE+ + L+ +
Sbjct: 71 DAR--RAGIAMVYQLSVGERQMVEIARALARNARLLILDEPTAAL-TPAEV---ERLFKV 124
Query: 548 MK-----GKTVIAIAHRLSTISAM-DRLIVLDNGCVA 578
++ G VI I+HRL + + DR+ VL +G V
Sbjct: 125 IRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
Score = 54.4 bits (132), Expect = 1e-08
Identities = 27/66 (40%), Positives = 42/66 (63%), Gaps = 1/66 (1%)
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESLREQ 435
+ +SL+++ GE L+G +GAGKST+ +L Y GEIL+DG+ +S S +++ R
Sbjct: 17 DGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAG 76
Query: 436 IGMVTQ 441
I MV Q
Sbjct: 77 IAMVYQ 82
>gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional.
Length = 659
Score = 78.8 bits (194), Expect = 3e-15
Identities = 67/216 (31%), Positives = 113/216 (52%), Gaps = 22/216 (10%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL-RFYDIKY-GEILIDGQNISNVS 428
Q+ I+N ++ PGE + ++G SG+GKST+ N L R + G IL + + +
Sbjct: 79 QERTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT--- 135
Query: 429 QESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFI---KSLTD 484
+ + ++ G VTQD L H ++R+ +++ C L K I +S+
Sbjct: 136 -KQILKRTGFVTQDDILYPHLTVRETLVF-------CSLLRLPKSLTKQEKILVAESVIS 187
Query: 485 EHG-RKGYDAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
E G K + +G I+ +SGG+R+R++IA +L N +L+LDE TS LD+ A +
Sbjct: 188 ELGLTKCENTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVL 247
Query: 543 SLYNLM-KGKTVIAIAHRLST--ISAMDRLIVLDNG 575
+L +L KGKT++ H+ S+ D ++VL G
Sbjct: 248 TLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEG 283
>gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system,
component A2. The enzyme that catalyzes the final step
in methanogenesis, methyl coenzyme M reductase, contains
alpha, beta, and gamma chains. In older literature, the
complex of alpha, beta, and gamma chains was termed
component C, while this single chain protein was termed
methyl coenzyme M reductase system component A2 [Energy
metabolism, Methanogenesis].
Length = 520
Score = 77.9 bits (192), Expect = 4e-15
Identities = 67/273 (24%), Positives = 124/273 (45%), Gaps = 57/273 (20%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLL--LRFYDIKYGEI 417
I KN++ +D K ++ N+S TI+ GE +G++GRSGAGKS + ++L + Y+ G I
Sbjct: 1 IEVKNLTKKFDGKE-VLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRI 59
Query: 418 L---------------------------------IDGQNISNVSQESLREQIGMVTQDTS 444
+ +D N+S+ + +R++I ++ Q T
Sbjct: 60 IYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTF 119
Query: 445 LLH--RSIRDNILYGRPDA---SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499
L+ ++ DN+L + + + A I+ + H H+
Sbjct: 120 ALYGDDTVLDNVLEALEEIGYEGKEAVGRAVD------LIEMVQLSHRI----THIAR-- 167
Query: 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIA 557
LSGG++QR+ +AR + K + L DE T LD + + +L +K G +++ +
Sbjct: 168 -DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 558 HRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKK 589
H I + D+ I L+NG + EEG+ +++
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV 259
Score = 74.1 bits (182), Expect = 7e-14
Identities = 56/219 (25%), Positives = 112/219 (51%), Gaps = 21/219 (9%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF-------YDIKYGEILIDGQNISNVS 428
++N+SL ++ GE G+VG SGAGK+T++ ++ +++ G+ +D
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 429 QESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKS--LTDE 485
+ + IG++ Q+ L HR++ DN+ +A EL + +A I +K +E
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNL----TEAIGLELPDELARMKAVITLKMVGFDEE 415
Query: 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
+ D + E LS G+R R+A+A+V++K I++LDE T +D ++ + S+
Sbjct: 416 KAEEILDKYPDE----LSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSIL 471
Query: 546 NLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
+ +T I ++H + + + DR ++ +G + + G
Sbjct: 472 KAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIG 510
>gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP)
Family protein. [Transport and binding proteins,
Other].
Length = 617
Score = 78.5 bits (194), Expect = 4e-15
Identities = 68/223 (30%), Positives = 112/223 (50%), Gaps = 20/223 (8%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK----YGEILIDGQNISN 426
+KHL+ N+S +PGE + ++G SGAGK+T+ N L F K G +L++G I
Sbjct: 37 RKHLL-KNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPID- 93
Query: 427 VSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDE 485
+ +R V QD + ++R+++++ + + E + +
Sbjct: 94 --AKEMRAISAYVQQDDLFIPTLTVREHLMF----QAHLRMPRRVTKKEKRERVDEVLQA 147
Query: 486 HG-RKGYDAHVGEHGIK--LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
G RK + +G G LSGG+R+R+A A +L + P+L DE TS LDS ++ +
Sbjct: 148 LGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQ 207
Query: 543 SLYNL-MKGKTVIAIAHRLST--ISAMDRLIVLDNGCVAEEGS 582
L L KGKT+I H+ S+ D++I++ G VA GS
Sbjct: 208 VLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGS 250
>gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding
protein; Provisional.
Length = 265
Score = 75.4 bits (185), Expect = 4e-15
Identities = 60/216 (27%), Positives = 109/216 (50%), Gaps = 12/216 (5%)
Query: 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES 431
K+ + NL++ I G ++G +G GKST+ L R +G + +DG++I + + +
Sbjct: 19 KYTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKE 78
Query: 432 LREQIGMVTQD-TSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
+ +IG++ Q+ T+ ++++ + GR LF + + + K++ +
Sbjct: 79 VARRIGLLAQNATTPGDITVQELVARGR--YPHQPLFTRWRKEDEEAVTKAM-----QAT 131
Query: 491 YDAHVGEHGI-KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSL--YNL 547
H+ + + LSGGQRQR IA V+ + I+LLDE T+ LD +I + + L N
Sbjct: 132 GITHLADQSVDTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNR 191
Query: 548 MKGKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGS 582
KG T+ A+ H L+ LI L G + +G+
Sbjct: 192 EKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGA 227
>gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 276
Score = 75.5 bits (185), Expect = 4e-15
Identities = 62/214 (28%), Positives = 103/214 (48%), Gaps = 12/214 (5%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKY-GEILIDGQNISNVSQ 429
+++ +S+ L+G +G+GK+T L R D +Y G++L+ G++I N
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 430 E-SLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGR 488
R ++GM+ Q + SI DN+L G A+A + L D
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWD---- 151
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
+ + +LSGGQ+Q + +AR + N +LLLDE TSALD I++ + +L
Sbjct: 152 -AVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 549 KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
TVI + H L+ + + DR + +G + EEG
Sbjct: 211 DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEG 244
>gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC
transporter ATP-binding subunit GldA. Members of this
protein family are exclusive to the Bacteroidetes phylum
(previously Cytophaga-Flavobacteria-Bacteroides). GldA
is an ABC transporter ATP-binding protein (pfam00005)
linked to a type of rapid surface gliding motility found
in certain Bacteroidetes, such as Flavobacterium
johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA
abolish the gliding phenotype. Gliding motility appears
closely linked to chitin utilization in the model
species Flavobacterium johnsoniae. Bacteroidetes with
members of this protein family appear to have all of the
genes associated with gliding motility.
Length = 301
Score = 76.0 bits (187), Expect = 4e-15
Identities = 54/222 (24%), Positives = 107/222 (48%), Gaps = 23/222 (10%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
++ +S Q G +G +G +GAGKST ++ + G + + G+++ +E ++
Sbjct: 18 LDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRN 76
Query: 436 IGMVTQDTSL-LHRSIRDNI-----LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
IG + + L L +R+ + +YG + + E + L E +K
Sbjct: 77 IGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQ--RVEEMIE----LVGLRPEQHKK 130
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
+G+ LS G RQR+ +A+ ++ + +L+LDE T+ LD + I+ + N+ K
Sbjct: 131 -----IGQ----LSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGK 181
Query: 550 GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKN 590
KT+I H + + A+ DR+I+++ G + + +L N
Sbjct: 182 DKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAAN 223
>gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 280
Score = 75.6 bits (186), Expect = 4e-15
Identities = 64/255 (25%), Positives = 122/255 (47%), Gaps = 35/255 (13%)
Query: 360 IFFKNVSFSYDQ----KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
I +NVS++Y + + +++LTI+ G +G +G+GKSTI LL + G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 416 EILIDGQNISNVSQ----ESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNA 469
+ +D I++ S+ + +R+++G+V Q ++ L ++ ++ +G P A
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQEEA 121
Query: 470 AKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529
A + + +++ K + +LSGGQ +R+AIA ++ IL+LDE T
Sbjct: 122 EALAREKLALVGISESLFEK--------NPFELSGGQMRRVAIAGILAMEPKILVLDEPT 173
Query: 530 SALDSEAEIAIQKSLYNLMK-----GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS- 582
+ LD + +K L L K G T++ + H + ++ D + VL+ G + G
Sbjct: 174 AGLDPKG----RKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKP 229
Query: 583 -----HLDLLKKNGL 592
+D L++ L
Sbjct: 230 KDIFQDVDFLEEKQL 244
>gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 283
Score = 75.7 bits (186), Expect = 5e-15
Identities = 67/232 (28%), Positives = 106/232 (45%), Gaps = 27/232 (11%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI---KYGEILI 419
+ ++++Y + +++ I+ GE ++G +GAGKST L I G IL
Sbjct: 9 EELNYNYSDGTHALKGININIKKGEVTAILGGNGAGKST---LFQNLNGILKPSSGRILF 65
Query: 420 DGQNI--SNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDAS--ECELFNAAKCA 473
DG+ I S LRE +GMV Q D L S+ ++ +G + E E+ A
Sbjct: 66 DGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNA 125
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
I+ L D+ H LS GQ++R+AIA V++ +L+LDE T+ LD
Sbjct: 126 LKRTGIEHLKDK------PTHC------LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLD 173
Query: 534 SEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
I K L + K G T+I H + + D + V+ G V +G+
Sbjct: 174 PMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 225
>gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter
subunit; Provisional.
Length = 262
Score = 74.7 bits (183), Expect = 6e-15
Identities = 70/261 (26%), Positives = 120/261 (45%), Gaps = 50/261 (19%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430
+H ++ + L I GE + L+G SG+GKST+ +++ LI G + E
Sbjct: 15 NQHQALHAVDLNIHHGEMVALLGPSGSGKSTL---------LRHLSGLITGDKSAGSHIE 65
Query: 431 SL-----------------REQIGMVTQDTSLLHR-SIRDNILYG----RPDASEC-ELF 467
L R G + Q +L++R S+ +N+L G P C F
Sbjct: 66 LLGRTVQREGRLARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWF 125
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLD 526
+ A +++LT R G H + LSGGQ+QR+AIAR +++ A ++L D
Sbjct: 126 TREQKQRA---LQALT----RVGM-VHFAHQRVSTLSGGQQQRVAIARALMQQAKVILAD 177
Query: 527 EATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGS- 582
E ++LD E+ + +L ++ + G TV+ H++ + +R++ L G V +GS
Sbjct: 178 EPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSS 237
Query: 583 -HLDLLKKNGLYSRLWRHQNK 602
D N + L+R N+
Sbjct: 238 QQFD----NERFDHLYRSINR 254
>gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 289
Score = 74.3 bits (182), Expect = 1e-14
Identities = 64/254 (25%), Positives = 120/254 (47%), Gaps = 23/254 (9%)
Query: 357 NGKIFFKNVSFSYDQKHLI----INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI 412
+ I NVS++Y +K +NN SLT + + ++G +G+GKST+ L
Sbjct: 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 413 KYGEILIDG----QNISNVSQ-ESLREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECE 465
+ G+ ++ N+ + + + LR++IG+V Q + L +I +I +G + E +
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENK 123
Query: 466 LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL 525
K E + + L +++ ++ +LSGGQ++R+A+A +I + L+L
Sbjct: 124 QEAYKKVPEL-LKLVQLPEDYVKRS--------PFELSGGQKRRVALAGIIAMDGNTLVL 174
Query: 526 DEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGS 582
DE T LD + E L K K +I + H + + D +IV+ G V GS
Sbjct: 175 DEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGS 234
Query: 583 HLDLLKKNGLYSRL 596
++ L +++
Sbjct: 235 PFEIFSNQELLTKI 248
>gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 207
Score = 72.6 bits (179), Expect = 1e-14
Identities = 56/223 (25%), Positives = 89/223 (39%), Gaps = 65/223 (29%)
Query: 354 VVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413
V G++ F +SF T+ GE + L G +G+GK+T+ L+
Sbjct: 10 CVRGGRVLFSGLSF--------------TLAAGEALVLTGPNGSGKTTLLRLIAGLLPPA 55
Query: 414 YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR-------SIRDNI-----LYGRPDA 461
G I +DG +I + + E L HR ++ +N+ G +
Sbjct: 56 AGTIKLDGGDIDD---PDVAEAC------HYLGHRNAMKPALTVAENLEFWAAFLGGEEL 106
Query: 462 SECELFNAAKCAE-ADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNA 520
A + A + H GY LS GQ++R+A+AR+++ N
Sbjct: 107 DIAA---ALEAVGLAPL-------AHLPFGY----------LSAGQKRRVALARLLVSNR 146
Query: 521 PILLLDEATSALDSEAEIAIQKSLYNLM-----KGKTVIAIAH 558
PI +LDE T+ALD+ A L+ +G VIA H
Sbjct: 147 PIWILDEPTAALDAAA----VALFAELIRAHLAQGGIVIAATH 185
>gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 325
Score = 74.7 bits (184), Expect = 1e-14
Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 26/230 (11%)
Query: 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437
++S I GE +G +G +GAGKST +L G++ ++G++ +E LR IG
Sbjct: 42 DISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLR-SIG 100
Query: 438 MVT-QDTSL-----LHRSIRDN-ILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
+V Q L S+ ++Y PD + AE F+ + D G
Sbjct: 101 LVMGQKLQLWWDLPALDSLEVLKLIYEIPDD---------EFAERLDFLTEILDLEGFLK 151
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSL--YNLM 548
+ KLS GQR R +A +L +L LDE T LD A+ I++ L YN
Sbjct: 152 WPVR------KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEE 205
Query: 549 KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNGLYSRLW 597
+ TV+ H I+ + DR++++D G + +G+ L ++ G Y
Sbjct: 206 RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQFGPYKEFS 255
>gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding
protein OppF; Provisional.
Length = 331
Score = 74.7 bits (184), Expect = 1e-14
Identities = 62/231 (26%), Positives = 107/231 (46%), Gaps = 46/231 (19%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE- 434
++ ++L + GE +G+VG SG GKST ++ GE+ G+++ + + R
Sbjct: 37 VDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAV 96
Query: 435 --QIGMVTQD--TSLLHR-SIRDNILYGRPDASECELFNAAKCAEA-DIFIKSLTDEHGR 488
I M+ QD SL R +I + I AE + L+ + +
Sbjct: 97 RSDIQMIFQDPLASLNPRMTIGEII------------------AEPLRTYHPKLSRQEVK 138
Query: 489 KGYDAHVGEHGI----------KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
A + + G+ + SGGQ QRI IAR ++ +++ DE SALD +
Sbjct: 139 DRVKAMMLKVGLLPNLINRYPHEFSGGQCQRIGIARALILEPKLIICDEPVSALD----V 194
Query: 539 AIQKSLYNLMK------GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
+IQ + NL++ G ++I IAH L+ + + DR++V+ G E G+
Sbjct: 195 SIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGT 245
>gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein.
Several bacterial species have enzymes xylose isomerase
and xylulokinase enzymes for xylose utilization. Members
of this protein family are the ATP-binding cassette
(ABC) subunit of the known or predicted high-affinity
xylose ABC transporter for xylose import. These genes,
which closely resemble other sugar transport ABC
transporter genes, typically are encoded near xylose
utilization enzymes and regulatory proteins. Note that
this form of the transporter contains two copies of the
ABC transporter domain (pfam00005) [Transport and
binding proteins, Carbohydrates, organic alcohols, and
acids].
Length = 500
Score = 76.0 bits (187), Expect = 1e-14
Identities = 63/220 (28%), Positives = 106/220 (48%), Gaps = 27/220 (12%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY--GEILIDGQNI--SNVSQES 431
++ + L ++PGE +GL G +GAGKST+ +L Y GEI G + SN+ ++
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIR-DT 75
Query: 432 LREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAA----KCAEADIFIKSLTDEH 486
R I ++ Q+ +L+ S+ +NI G + ++ D
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN 546
R VG++G GGQ+Q + IA+ + K A +L+LDE +S+L +E E I +
Sbjct: 136 TRP-----VGDYG----GGQQQLVEIAKALNKQARLLILDEPSSSL-TEKETEILLDIIR 185
Query: 547 LMKGKTV--IAIAHRLSTISAMDRLIVLDNGCVAEEGSHL 584
+K V + I+H+L+ + A V D CV +G H+
Sbjct: 186 DLKAHGVACVYISHKLNEVKA-----VCDTICVIRDGQHV 220
Score = 61.0 bits (148), Expect = 9e-10
Identities = 52/209 (24%), Positives = 102/209 (48%), Gaps = 14/209 (6%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY-GEILIDGQNISNVS-QESLR 433
++++S +++ GE +G+ G GAG++ + L Y K+ G + I+G+ + + +++R
Sbjct: 276 VDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIR 335
Query: 434 EQIGMVTQDTS----LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
I MV +D + + NI S C AE I ++ +
Sbjct: 336 AGIAMVPEDRKRHGIVPILGVGKNITLSVLK-SFCFKMRIDAAAELQIIGSAIQRLKVKT 394
Query: 490 GY-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
+G +LSGG +Q+ +A+++L N +L+LDE T +D A+ I K + L
Sbjct: 395 ASPFLPIG----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLA 450
Query: 549 -KGKTVIAIAHRLSTISAM-DRLIVLDNG 575
+G +I ++ L+ + + DR++V+ G
Sbjct: 451 QEGVAIIVVSSELAEVLGLSDRVLVIGEG 479
>gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein
YbbA; Provisional.
Length = 228
Score = 72.9 bits (179), Expect = 1e-14
Identities = 63/221 (28%), Positives = 101/221 (45%), Gaps = 33/221 (14%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---S 431
I+ + L ++ GE I L+G SG+GKST+ +L D GE+ + GQ + + +E
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 432 LR-EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
LR + +G V Q L+ NA + E ++ + R G
Sbjct: 85 LRAKHVGFVFQSFMLI------------------PTLNALENVELPALLRGESSRQSRNG 126
Query: 491 YDAHVGEHGI---------KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
A + + G+ +LSGG++QR+A+AR +L DE T LD + I
Sbjct: 127 AKALLEQLGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIA 186
Query: 542 KSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580
L++L + G T+I + H L + DR + L NG + EE
Sbjct: 187 DLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227
>gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit.
This model describes the ATP binding subunit of the
multisubunit cobalt transporter in bacteria and its
equivalents in archaea. The model is restricted to ATP
subunit that is a part of the cobalt transporter, which
belongs to the ABC transporter superfamily (ATP Binding
Cassette). The model excludes ATP binding subunit that
are associated with other transporters belonging to ABC
transporter superfamily. This superfamily includes two
groups, one which catalyze the uptake of small
molecules, including ions from the external milieu and
the other group which is engaged in the efflux of small
molecular weight compounds and ions from within the
cell. Energy derived from the hydrolysis of ATP drive
the both the process of uptake and efflux [Transport and
binding proteins, Cations and iron carrying compounds].
Length = 190
Score = 71.7 bits (176), Expect = 2e-14
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 19/191 (9%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI--SNVSQESL 432
++ L+ + GE + L+G +GAGKST+ L + G +LIDG+ + S
Sbjct: 7 VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSRKGLLER 66
Query: 433 REQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEH----GR 488
R+++G+V QD D + D + F ++ ++ E G
Sbjct: 67 RQRVGLVFQDPD-------DQLFA--ADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
G LSGG+++R+AIA + +LLLDE T+ LD + L L
Sbjct: 118 SGLRERPTHC---LSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 549 -KGKTVIAIAH 558
+G TV+ H
Sbjct: 175 AEGMTVVISTH 185
>gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter
ATP-binding protein; Provisional.
Length = 491
Score = 75.2 bits (185), Expect = 3e-14
Identities = 64/214 (29%), Positives = 102/214 (47%), Gaps = 31/214 (14%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS-NVSQESLRE 434
++N++L ++P L+G +GAGKST+ L Y G IL G+ I S+E+L
Sbjct: 14 LDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALEN 73
Query: 435 QIGMVTQDTSL-LHRSIRDNILYGR-----PDASECELFNAAKC--AEADIFIKSLTDEH 486
I MV Q+ +L L RS+ DN+ GR + +++ K E DI
Sbjct: 74 GISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDI--------- 124
Query: 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI----AIQK 542
D LS Q Q I IA+ NA I+++DE TS+L +E E+ I +
Sbjct: 125 -----DIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL-TEKEVNHLFTIIR 178
Query: 543 SLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNG 575
L +G ++ I+H++ I + D + +L +G
Sbjct: 179 KLKE--RGCGIVYISHKMEEIFQLCDEITILRDG 210
Score = 54.4 bits (131), Expect = 1e-07
Identities = 59/222 (26%), Positives = 100/222 (45%), Gaps = 34/222 (15%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESLRE 434
I ++S + GE +G+ G GA ++ I L + G I + G+ I+N + E++
Sbjct: 264 IRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINH 323
Query: 435 QIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAE------ADIFIKSLT----D 484
+VT++ R +Y D L + + + + +KS T D
Sbjct: 324 GFALVTEER-------RSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVID 376
Query: 485 EHGRK--GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
K G+ +G LSGG +Q++ I R +L IL+LDE T +D A+ I
Sbjct: 377 SMRVKTPGHRTQIGS----LSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEI-- 430
Query: 543 SLYNLM-----KGKTVIAIAHRLSTISAM-DRLIVLDNGCVA 578
Y L+ K K +I I+ + + + DR++V+ NG VA
Sbjct: 431 --YQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVA 470
>gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 290
Score = 72.4 bits (178), Expect = 6e-14
Identities = 68/256 (26%), Positives = 120/256 (46%), Gaps = 36/256 (14%)
Query: 360 IFFKNVSFSYDQK----HLIINNLSLTIQPGEKIGLVGRSGAGKSTI----NNLLLRFY- 410
I F+ V Y K + +++++I G + ++G +G+GKST+ N LL
Sbjct: 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSG 62
Query: 411 DIKYGEILIDGQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYGRPD--ASECEL 466
+ GE +I N + LR+++G+V Q + L ++ +I +G + SE +
Sbjct: 63 TVTIGERVITAGK-KNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEED- 120
Query: 467 FNAAKCAEADIFIKSLTDEH-GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL 525
A + A I + L +E R ++ LSGGQ +R+AIA V+ +L+L
Sbjct: 121 --AKQKAREMIELVGLPEELLARSPFE---------LSGGQMRRVAIAGVLAMEPEVLVL 169
Query: 526 DEATSALDSEAEIAIQKSLYNLM--KGKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGS 582
DE T+ LD + + + Y L KG T + + H + + D+++V+ G V +G+
Sbjct: 170 DEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGT 229
Query: 583 ------HLDLLKKNGL 592
D L+ GL
Sbjct: 230 PREIFADPDELEAIGL 245
>gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component;
Provisional.
Length = 330
Score = 72.8 bits (179), Expect = 7e-14
Identities = 68/238 (28%), Positives = 107/238 (44%), Gaps = 55/238 (23%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKS----TINNLLLRFYDIKYGEILIDGQNISNVSQES 431
+N+L+ +++ GE +G+VG SG+GKS + LL I G +G+ I N+ ++
Sbjct: 32 VNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIG-GSATFNGREILNLPEKE 90
Query: 432 LR----EQIGMVTQD--TSL---------------LHRSIRDNILYGRPDASE--CELFN 468
L EQI M+ QD TSL LH+ + +A E + +
Sbjct: 91 LNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKG------MSKAEAFEESVRMLD 144
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
A K EA R H + SGG RQR+ IA +L +L+ DE
Sbjct: 145 AVKMPEA----------RKRMKMYPH------EFSGGMRQRVMIAMALLCRPKLLIADEP 188
Query: 529 TSALDSEAEIAIQKSLYNLMK---GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
T+ALD + I +L N +K +I I H L ++ + D+++V+ G E G+
Sbjct: 189 TTALDVTVQAQIM-TLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGN 245
>gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein;
Provisional.
Length = 510
Score = 74.1 bits (182), Expect = 7e-14
Identities = 53/207 (25%), Positives = 105/207 (50%), Gaps = 13/207 (6%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE-SLRE 434
+ +++LT+ PGE L+G +GAGKST+ +L ++ G I I+ N + + + + +
Sbjct: 21 LKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQL 80
Query: 435 QIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHG-RKGYD 492
IG++ Q+ S++ ++ +N+ GR + N E + + G + D
Sbjct: 81 GIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVDLD 140
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL-DSEAE--IAIQKSLYNLMK 549
V LS +Q + IA+ ++ +A ++++DE TS+L + E + I L +
Sbjct: 141 EKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK--E 194
Query: 550 GKTVIAIAHRLSTISAM-DRLIVLDNG 575
G ++ I+H+L+ I + DR V+ +G
Sbjct: 195 GTAIVYISHKLAEIRRICDRYTVMKDG 221
Score = 67.5 bits (165), Expect = 7e-12
Identities = 70/316 (22%), Positives = 137/316 (43%), Gaps = 64/316 (20%)
Query: 313 ISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVV----------------- 355
ISH + EI + + ++DG ++ S V N + RL+V
Sbjct: 201 ISH-KLAEIRRICDRYTVMKDGSSVCSGMVSDVSNDDIVRLMVGRELQNRFNAMKENVSN 259
Query: 356 TNGKIFF--KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413
+ F +NV+ S D+K + ++S ++ GE +G G G+G++ + N L
Sbjct: 260 LAHETVFEVRNVT-SRDRKK--VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRA 316
Query: 414 YGEILIDGQNISNVSQ-ESLREQIGMVTQ---DTSLLHR-SIRDNILYGR--PDA----- 461
GEI ++G++IS S +++++ + +T+ D SI N+ R D
Sbjct: 317 GGEIRLNGKDISPRSPLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGA 376
Query: 462 ----SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517
E + A+ + +K V ++ +LSGG +Q++ I++ +
Sbjct: 377 MGLFHEVDEQRTAENQRELLALKC-----------HSVNQNITELSGGNQQKVLISKWLC 425
Query: 518 KNAPILLLDEATSALD--SEAEIAIQKSLYNLMK-----GKTVIAIAHRLSTISAM-DRL 569
+++ DE T +D ++AEI Y +M+ GK ++ ++ L I + DR+
Sbjct: 426 CCPEVIIFDEPTRGIDVGAKAEI------YKVMRQLADDGKVILMVSSELPEIITVCDRI 479
Query: 570 IVLDNGCVAEEGSHLD 585
V G + + ++ D
Sbjct: 480 AVFCEGRLTQILTNRD 495
>gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 267
Score = 71.0 bits (174), Expect = 1e-13
Identities = 66/246 (26%), Positives = 113/246 (45%), Gaps = 23/246 (9%)
Query: 353 LVVTN-GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD 411
L V N K F Q + +S T++ G+ + ++G +G+GKST+ +L +
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 412 IKYGEILIDGQNISNVSQESLREQIGMVTQD--TSLLHRSIRDNILYGRPDASECELFNA 469
GEILI+ + ++I M+ QD TSL R IL P +L
Sbjct: 65 PTSGEILINDHPLHFGDYSFRSKRIRMIFQDPNTSLNPRLRIGQILDF-PLRLNTDLEPE 123
Query: 470 AKCAEADIFIKSLTDEHGRKG-YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
+ K + + G H + L+ GQ+QR+A+AR ++ I++ DEA
Sbjct: 124 QR-------RKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEA 176
Query: 529 TSALDSEAEIAIQKSLYNLM------KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
++LD ++++ L NLM +G + I + + I + D+++V+ G V E G
Sbjct: 177 LASLD----MSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERG 232
Query: 582 SHLDLL 587
S D+L
Sbjct: 233 STADVL 238
>gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase
component [General function prediction only].
Length = 300
Score = 71.6 bits (176), Expect = 1e-13
Identities = 59/236 (25%), Positives = 114/236 (48%), Gaps = 18/236 (7%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+ + V+ S+ K ++N+S + PGE GL+G +GAGK+T ++L + GEI
Sbjct: 2 ALEIEGVTKSFGDKK-AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEIT 60
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADI 477
+G +S + ++ +IG + ++ L + ++ D + Y EL K AE
Sbjct: 61 WNGGPLS----QEIKNRIGYLPEERGLYPKMTVEDQLKY------LAELKGMPK-AEIQK 109
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
+++ + G + +LS G +Q+I ++ +L+LDE S LD
Sbjct: 110 KLQAWLERLEIVGKKTKKIK---ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNV 166
Query: 538 IAIQKSLYNLM-KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNG 591
++ +++ L +G T+I +HR+ + + DRL++L G G+ D+ + G
Sbjct: 167 ELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGTVEDIRRSFG 222
>gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional.
Length = 272
Score = 70.6 bits (173), Expect = 2e-13
Identities = 70/247 (28%), Positives = 109/247 (44%), Gaps = 47/247 (19%)
Query: 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY------------GEILID 420
I+ +LSL I+PG L+GR+GAGKST LL+ G++ ++
Sbjct: 14 RAILRDLSLRIEPGRVTALLGRNGAGKST----LLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 421 GQNISNVSQESL-REQIGMVTQDTSLLHRSIRDNILYGR-PDASECELFNAAKCAEADIF 478
G+ ++ + L R + + S R+ +L GR P A A + +I
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRA---GALTHRDGEIA 126
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP---------ILLLDEAT 529
++L G A VG LSGG+ R+ ARV+ + P LLLDE T
Sbjct: 127 WQALA----LAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPT 182
Query: 530 SALDSEAEIAIQKSLYNLMKGKT------VIAIAH--RLSTISAMDRLIVLDNGCVAEEG 581
+ALD +A Q L + ++ V+AI H L+ A DR+ +L +G + G
Sbjct: 183 AALD----LAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHA-DRIAMLADGAIVAHG 237
Query: 582 SHLDLLK 588
+ D+L
Sbjct: 238 APADVLT 244
>gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an
uncharacterized transporter similar in sequence to NatA.
NatA is the ATPase component of a bacterial ABC-type
Na+ transport system called NatAB, which catalyzes
ATP-dependent electrogenic Na+ extrusion without
mechanically coupled to proton or K+ uptake. NatB
possess six putative membrane spanning regions at its
C-terminus. In B. subtilis, NatAB is inducible by agents
such as ethanol and protonophores, which lower the
proton-motive force across the membrane. The closest
sequence similarity to NatA is exhibited by DrrA of the
two-component daunorubicin- and doxorubicin-efflux
system. Hence, the functional NatAB is presumably
assembled with two copies of the single ATP-binding
protein and the single integral membrane protein.
Length = 236
Score = 70.1 bits (172), Expect = 2e-13
Identities = 64/221 (28%), Positives = 101/221 (45%), Gaps = 36/221 (16%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+ +S TI+ GE +G +G +GAGK+T +L GE+ + G + ++ +
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAG-LVPWKRRKKFLRR 95
Query: 436 IGMV----TQ--------DTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLT 483
IG+V TQ D+ L +I Y P A + + +E + ++ L
Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYLLAAI-----YDLPPARFKK--RLDELSEL-LDLEELL 147
Query: 484 DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKS 543
D R +LS GQR R IA +L IL LDE T LD A+ I+
Sbjct: 148 DTPVR------------QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNF 195
Query: 544 L--YNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
L YN +G TV+ +H + I A+ R++V+D G + +G
Sbjct: 196 LKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYDG 236
>gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein;
Provisional.
Length = 253
Score = 70.3 bits (172), Expect = 2e-13
Identities = 61/212 (28%), Positives = 91/212 (42%), Gaps = 31/212 (14%)
Query: 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK-----YGEIL 418
N+ Y H +I + L I L+G SG GKST+ R ++ GE+
Sbjct: 9 NLRVYYGSNH-VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVR 67
Query: 419 IDGQNISN--VSQESLREQIGMVTQ-DTSLLHRSIRDNILYG---------RPDASECEL 466
+ G+NI + V +R ++GMV Q H +I DN+ G + + E
Sbjct: 68 LFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVE 127
Query: 467 FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
+ K A D L D LSGGQRQR+ IAR + ILL+D
Sbjct: 128 WALKKAALWDEVKDRLNDYPS-------------NLSGGQRQRLVIARALAMKPKILLMD 174
Query: 527 EATSALDSEAEIAIQKSLYNLMKGKTVIAIAH 558
E T+ +D I++ L+ L K T++ + H
Sbjct: 175 EPTANIDPVGTAKIEELLFELKKEYTIVLVTH 206
>gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional.
Length = 248
Score = 70.0 bits (172), Expect = 2e-13
Identities = 64/241 (26%), Positives = 98/241 (40%), Gaps = 56/241 (23%)
Query: 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI--KYGEILIDGQNISNVSQESLREQI 436
LS ++ GE + LVG +GAGKST LL R + G I GQ + S L
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKST---LLARMAGLLPGSGSIQFAGQPLEAWSAAELARHR 71
Query: 437 GMVTQDTS-----------LLHRSIRDNILYGRPDASE-CELFNAAKCAEADIFIKSLTD 484
++Q + LH+ + +E E L D
Sbjct: 72 AYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALG-------------LDD 118
Query: 485 EHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILK-------NAPILLLDEATSALDSEAE 537
+ GR V + LSGG+ QR+ +A V+L+ +LLLDE ++LD
Sbjct: 119 KLGR-----SVNQ----LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD---- 165
Query: 538 IAIQKSLYNLMK-----GKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKKNG 591
+A Q +L L+ G V+ +H L+ T+ DR+ +L G + G ++L
Sbjct: 166 VAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
Query: 592 L 592
L
Sbjct: 226 L 226
>gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family
protein. [Transport and binding proteins, Other].
Length = 1394
Score = 73.2 bits (180), Expect = 2e-13
Identities = 66/235 (28%), Positives = 116/235 (49%), Gaps = 25/235 (10%)
Query: 356 TNGKIFF-KNVSFSYDQK-----HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
+ IF +N++ Y+ K +I+NN+ ++PG L+G SGAGK+T+ N+L
Sbjct: 755 SGEDIFHWRNLT--YEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAER 812
Query: 410 YD---IKYGEILIDGQNISNVSQESLREQIGMVTQ-DTSLLHRSIRDNILYGRPDASECE 465
I G+ L++G+ + S + IG V Q D L ++R+++ + ++
Sbjct: 813 VTTGVITGGDRLVNGRPL----DSSFQRSIGYVQQQDLHLPTSTVRESLRF----SAYLR 864
Query: 466 LFNAAKCAEADIFIKSLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIA-RVILKNAPIL 523
+ +E +++ + + Y DA VG G L+ QR+R+ I ++ K +L
Sbjct: 865 QPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLL 924
Query: 524 LLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTI--SAMDRLIVLDNG 575
LDE TS LDS+ +I K + L G+ ++ H+ S I DRL++L G
Sbjct: 925 FLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKG 979
Score = 51.6 bits (124), Expect = 1e-06
Identities = 57/231 (24%), Positives = 93/231 (40%), Gaps = 49/231 (21%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYDIKYGEILIDGQNISNVSQE 430
I+ + I+PGE ++GR G+G ST I + F+ G I DG ++ E
Sbjct: 76 ILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDG-----ITPE 130
Query: 431 SLREQI---------------GMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
+++ + +T L + R RPD E + A A
Sbjct: 131 EIKKHYRGDVVYNAETDVHFPHLTVGET--LDFAARCKTPQNRPDGVSREEY-AKH--IA 185
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
D+++ + H R + VG ++ +SGG+R+R++IA L A I D AT LDS
Sbjct: 186 DVYMATYGLSHTR---NTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAHRLSTISA----------MDRLIVLDNG 575
+ ++L KT I ++ D++IVL G
Sbjct: 243 ATALEFIRAL------KTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEG 287
>gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 288
Score = 70.5 bits (172), Expect = 3e-13
Identities = 58/242 (23%), Positives = 120/242 (49%), Gaps = 21/242 (8%)
Query: 360 IFFKNVSFSYDQKHLIIN----NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
I F+ V+++Y + ++ L ++ G L+G +G+GKST+ L G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 416 EILIDGQNISNVSQES----LREQIGMVTQ--DTSLLHRSIRDNILYGRPDASECELFNA 469
++ + +S+ S++ +R+++G+V Q ++ L ++ ++ +G P A
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKEKA 120
Query: 470 AKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529
K A + + L DE K +LSGGQ +R+AIA ++ +L+LDE T
Sbjct: 121 EKIAAEKLEMVGLADEFWEKS--------PFELSGGQMRRVAIAGILAMEPEVLVLDEPT 172
Query: 530 SALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISA-MDRLIVLDNGCVAEEGSHLDLL 587
+ LD +A I + + ++ + G+TV+ + H + ++ D + +L+ G + G+ D+
Sbjct: 173 AGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVF 232
Query: 588 KK 589
++
Sbjct: 233 QE 234
>gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter
ATP-binding subunit. This model describes daunorubicin
resistance ABC transporter, ATP binding subunit in
bacteria and archaea. This model is restricted in its
scope to preferentially recognize the ATP binding
subunit associated with effux of the drug, daunorubicin.
This transport system belong to the larger ATP-Binding
Cassette (ABC) transporter superfamily. The
characteristic feature of these transporter is the
obligatory coupling of ATP hydrolysis to substrate
translocation. The minimal configuration of bacterial
ABC transport system: an ATPase or ATP binding subunit;
An integral membrane protein; a hydrophilic polypetpide,
which likely functions as substrate binding protein. In
eukaryotes proteins of similar function include p-gyco
proteins, multidrug resistance protein etc [Transport
and binding proteins, Other].
Length = 302
Score = 70.1 bits (172), Expect = 3e-13
Identities = 57/209 (27%), Positives = 95/209 (45%), Gaps = 18/209 (8%)
Query: 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ-ESLREQIG 437
++ ++ GE G +G +GAGK+T +L G + G ++ V + +R IG
Sbjct: 12 VNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDV--VREPRKVRRSIG 69
Query: 438 MVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTD--EHGRKGYDAHV 495
+V Q S+ D L GR + EA+ + L + E G D V
Sbjct: 70 IVPQYASV------DEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAA-DRPV 122
Query: 496 GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVI 554
G + SGG R+R+ IA ++ +L LDE T+ LD AI + L + G T++
Sbjct: 123 GTY----SGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 555 AIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
H + + DR+ ++D+G + EG+
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGT 207
>gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c
biogenesis, ATPase component [Posttranslational
modification, protein turnover, chaperones].
Length = 209
Score = 68.5 bits (168), Expect = 4e-13
Identities = 60/229 (26%), Positives = 92/229 (40%), Gaps = 44/229 (19%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+N+S ++ + ++LS T+ GE + + G +GAGK+T+ +L GE+ G+
Sbjct: 6 ENLSCERGER-TLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGE 64
Query: 423 NISNVSQESLREQIGMVTQDTSLLHRSIRDNILY-GRPDASECELFNAAKCAEADIFIKS 481
I NV S +LY G + EL E F +
Sbjct: 65 PIQNVR-------------------ESYHQALLYLGHQPGIKTEL----TALENLHFWQR 101
Query: 482 LTDEHGRKGYD---AHVGEHGI------KLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
A VG G+ +LS GQ++R+A+AR+ L AP+ +LDE +AL
Sbjct: 102 FHGSGNAATIWEALAQVGLAGLEDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161
Query: 533 DSEAEIAIQKSLYNLMKGKT-----VIAIAHR-LSTISAMDRLIVLDNG 575
D E L LM V+ H+ L SA R + L
Sbjct: 162 DKEGVAL----LTALMAAHAAQGGIVLLTTHQPLPIASAQIRRLDLTAT 206
>gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of
peroxisomal transporter, subfamily D. Peroxisomal
ATP-binding cassette transporter (Pat) is involved in
the import of very long-chain fatty acids (VLCFA) into
the peroxisome. The peroxisomal membrane forms a
permeability barrier for a wide variety of metabolites
required for and formed during fatty acid
beta-oxidation. To communicate with the cytoplasm and
mitochondria, peroxisomes need dedicated proteins to
transport such hydrophilic molecules across their
membranes. X-linked adrenoleukodystrophy (X-ALD) is
caused by mutations in the ALD gene, which encodes ALDP
(adrenoleukodystrophy protein ), a peroxisomal integral
membrane protein that is a member of the ATP-binding
cassette (ABC) transporter protein family. The disease
is characterized by a striking and unpredictable
variation in phenotypic expression. Phenotypes include
the rapidly progressive childhood cerebral form (CCALD),
the milder adult form, adrenomyeloneuropathy (AMN), and
variants without neurologic involvement (i.e.
asymptomatic).
Length = 166
Score = 67.2 bits (165), Expect = 4e-13
Identities = 35/75 (46%), Positives = 47/75 (62%), Gaps = 6/75 (8%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGK--TVIAIAHR 559
LSGG++QR+A AR++L + LDEATSALD E+E LY L+K TVI++ HR
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDR----LYQLLKELGITVISVGHR 147
Query: 560 LSTISAMDRLIVLDN 574
S DR++ LD
Sbjct: 148 PSLWKFHDRVLDLDG 162
Score = 41.8 bits (99), Expect = 2e-04
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR 408
I +N+S + +++ +LS I+PG+++ + G SG GKS+ L R
Sbjct: 1 IELENLSLATPDGRVLLKDLSFEIKPGDRLLITGPSGTGKSS----LFR 45
>gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding
protein. DrrA is the ATP-binding protein component of a
bacterial exporter complex that confers resistance to
the antibiotics daunorubicin and doxorubicin. In
addition to DrrA, the complex includes an integral
membrane protein called DrrB. DrrA belongs to the ABC
family of transporters and shares sequence and
functional similarities with a protein found in cancer
cells called P-glycoprotein. ABC transporters are a
large family of proteins involved in the transport of a
wide variety of different compounds, like sugars, ions,
peptides, and more complex organic molecules. The
nucleotide binding domain shows the highest similarity
between all members of the family. ABC transporters are
a subset of nucleotide hydrolases that contain a
signature motif, Q-loop, and H-loop/switch region in
addition to the Walker A motif/P-loop and Walker B motif
commonly found in a number of ATP- and GTP-binding and
hydrolyzing proteins.
Length = 220
Score = 68.6 bits (168), Expect = 5e-13
Identities = 61/230 (26%), Positives = 103/230 (44%), Gaps = 22/230 (9%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +N+ Y + +S ++ GE GL+G +GAGK+T +L G +
Sbjct: 1 IEVENLVKKYGD-FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATV 59
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFI 479
G ++ +E +R +IG+V QD S+ D+ L G + AE I
Sbjct: 60 AGHDVVREPRE-VRRRIGIVFQDLSV------DDELTGWENLYIHARLYGVPGAERRERI 112
Query: 480 KSLTDEHGRKGYDAHVGEHGIKL----SGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
L D G + E +L SGG R+R+ IAR ++ +L LDE T LD +
Sbjct: 113 DELLDFVG-------LLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQ 165
Query: 536 AEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
+ + + L + G T++ H + + DR+ ++D+G + EG+
Sbjct: 166 TRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGT 215
>gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein;
Provisional.
Length = 501
Score = 71.2 bits (175), Expect = 5e-13
Identities = 64/210 (30%), Positives = 108/210 (51%), Gaps = 22/210 (10%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS-NVSQESLRE 434
++ +L + PG + LVG +GAGKST+ +L Y G IL G+ ++ N + S
Sbjct: 20 LSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEA 79
Query: 435 QIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKC-AEADIFIKSLTDEHGRKGYD 492
IG++ Q+ +L+ +I +NI GR + + K AEAD + L
Sbjct: 80 GIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSD--- 136
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL-DSEAEIAIQKSLYNLMK-- 549
VGE LS G++Q + IA+V+ + ++++DE T AL D+E E SL+ +++
Sbjct: 137 KLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETE-----SLFRVIREL 187
Query: 550 ---GKTVIAIAHRLSTISAM-DRLIVLDNG 575
G+ ++ I+HRL I + D + V +G
Sbjct: 188 KSQGRGIVYISHRLKEIFEICDDVTVFRDG 217
Score = 56.6 bits (137), Expect = 2e-08
Identities = 55/214 (25%), Positives = 105/214 (49%), Gaps = 24/214 (11%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESLRE 434
+N++S T++ GE +G+ G GAG++ + +L G + +DG + S Q+ L
Sbjct: 268 VNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLAN 327
Query: 435 QIGMVTQDTS----LLHRSIRDNI-LYGRPDASE--CELFNAAKCAEADIFIKSLTDEHG 487
I +++D +L S+++N+ L S L +A + FI+ +
Sbjct: 328 GIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIK-- 385
Query: 488 RKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL 547
+ +G LSGG +Q++AIAR ++ +L+LDE T +D A +K +Y L
Sbjct: 386 TPSMEQAIG----LLSGGNQQKVAIARGLMTRPKVLILDEPTRGVDVGA----KKEIYQL 437
Query: 548 M-----KGKTVIAIAHRLSTISAM-DRLIVLDNG 575
+ +G ++I ++ + + M DR++V+ G
Sbjct: 438 INQFKAEGLSIILVSSEMPEVLGMSDRILVMHEG 471
>gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette
domain 2 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI's are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLI's have an N-terminal Fe-S domain and
two nucleotide-binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity of more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 246
Score = 68.6 bits (168), Expect = 6e-13
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 33/215 (15%)
Query: 367 FSYDQKHLIINNLSLTIQPG-----EKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
++Y + +L ++ G E IG++G +G GK+T +L G+I I+
Sbjct: 1 YTYPTMKKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIEL 60
Query: 422 QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKS 481
+S Q + G V LL +D + + E+ + I+
Sbjct: 61 DTVSYKPQYIKADYEGTVRD---LLSSITKD---FYTHPYFKTEIAKPLQ-------IEQ 107
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
+ D V E LSGG+ QR+AIA + K+A I LLDE ++ LD E +
Sbjct: 108 I--------LDREVPE----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155
Query: 542 KSL--YNLMKGKTVIAIAHRLSTISAM-DRLIVLD 573
K + + KT + H + I + DRLIV +
Sbjct: 156 KVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFE 190
>gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein;
Provisional.
Length = 272
Score = 68.8 bits (168), Expect = 8e-13
Identities = 62/235 (26%), Positives = 105/235 (44%), Gaps = 31/235 (13%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +V+ ++ H + + S T+ G LVG +G+GKST+ L+ F + G+I I
Sbjct: 7 IVVNDVTVTWRNGHTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISI 66
Query: 420 DGQNISNVSQESLREQIGMVTQDTSL---LHRSIRDNILYGR---------PDASECELF 467
GQ Q++L + V Q + + D ++ GR + ++
Sbjct: 67 LGQPTRQALQKNL---VAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIV 123
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
AA A D+ E + +GE LSGGQ++R+ +AR I + ++LLDE
Sbjct: 124 TAA-LARVDMV------EFRHR----QIGE----LSGGQKKRVFLARAIAQQGQVILLDE 168
Query: 528 ATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581
+ +D + E I L L +GKT++ H L +++ V+ G V G
Sbjct: 169 PFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMVKGTVLASG 223
>gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter,
ATP-binding subunit. This protein family is the
ATP-binding cassette subunit of binding
protein-dependent ABC transporter complex that strictly
co-occurs with TIGR03769. TIGRFAMs model TIGR03769
describes a protein domain that occurs singly or as one
of up to three repeats in proteins of a number of
Actinobacteria, including Propionibacterium acnes
KPA171202. The TIGR03769 domain occurs both in an
adjacent gene for the substrate-binding protein and in
additional (often nearby) proteins, often with
LPXTG-like sortase recognition signals. Homologous
ATP-binding subunits outside the scope of this family
include manganese transporter MntA in Synechocystis sp.
PCC 6803 and chelated iron transporter subunits. The
function of this transporter complex is unknown
[Transport and binding proteins, Unknown substrate].
Length = 223
Score = 67.6 bits (165), Expect = 8e-13
Identities = 60/220 (27%), Positives = 90/220 (40%), Gaps = 33/220 (15%)
Query: 381 LTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVT 440
L+ GE +GL+G +GAGK+T+ +L G + + G S IG V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGA-----SPGKGWRHIGYVP 55
Query: 441 QDTSLLHR-------SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA 493
Q H S+ ++ GR A+ +L + D
Sbjct: 56 QR----HEFAWDFPISVAHTVMSGR--TGHIGWLRRPCVADFAAVRDALRRVGLTELADR 109
Query: 494 HVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK---- 549
VGE LSGGQRQR+ +AR + +LLLDE + LD Q+ L L
Sbjct: 110 PVGE----LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPT----QELLTELFIELAG 161
Query: 550 -GKTVIAIAHRL-STISAMDRLIVLDNGCVAEEGSHLDLL 587
G ++ H L ++ DR+++L NG V +G+ L
Sbjct: 162 AGTAILMTTHDLAQAMATCDRVVLL-NGRVIADGTPQQLQ 200
>gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA. This
model describes the cyt c biogenesis protein encoded by
ccmA in bacteria. An exception is, an arabidopsis
protein. Quite likely this is encoded by an organelle.
Bacterial c-type cytocromes are located on the
periplasmic side of the cytoplasmic membrane. Several
gene products encoded in a locus designated as 'ccm' are
implicated in the transport and assembly of the
functional cytochrome C. This cluster includes genes:
ccmA;B;C;D;E;F;G and H. The posttranslational pathway
includes the transport of heme moiety, the secretion of
the apoprotein and the covalent attachment of the heme
with the apoprotein. The proteins ccmA and B represent
an ABC transporter; ccmC and D participate in heme
transfer to ccmE, which function as a periplasmic heme
chaperone. The presence of ccmF, G and H is suggested to
be obligatory for the final functional assembly of
cytochrome c [Protein fate, Protein and peptide
secretion and trafficking, Transport and binding
proteins, Other].
Length = 198
Score = 67.0 bits (164), Expect = 9e-13
Identities = 51/186 (27%), Positives = 82/186 (44%), Gaps = 17/186 (9%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE 434
+ LS T+ GE + + G +G GK+T+ +L GE+ +G ++ ++
Sbjct: 15 LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQ-RDEPHR 73
Query: 435 QIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAH 494
I L H L A E F AA A I+ G G+
Sbjct: 74 NILY------LGHL----PGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-ED 122
Query: 495 VGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY--NLMKGKT 552
+ +LS GQ++R+A+AR+ L AP+ +LDE T+ALD +A+ L +L +G
Sbjct: 123 LPAA--QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAG-VALLAGLLRAHLARGGI 179
Query: 553 VIAIAH 558
V+ H
Sbjct: 180 VLLTTH 185
>gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein;
Provisional.
Length = 501
Score = 69.9 bits (172), Expect = 1e-12
Identities = 53/208 (25%), Positives = 99/208 (47%), Gaps = 23/208 (11%)
Query: 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ--NISNVSQESLREQ 435
++S + G+ L+G +GAGKST+ +L Y G ILIDGQ ++ + +L
Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTT-AALAAG 80
Query: 436 IGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYD-- 492
+ ++ Q+ L+ ++ +N+ G+ L + + ++ G D
Sbjct: 81 VAIIYQELHLVPEMTVAENLYLGQ-------LPHKGGIVNRRLLNYEAREQLEHLGVDID 133
Query: 493 --AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK- 549
+ LS GQRQ + IA+ + +NA ++ DE TS+L S EI + ++
Sbjct: 134 PDTPLKY----LSIGQRQMVEIAKALARNARVIAFDEPTSSL-SAREIEQLFRVIRELRA 188
Query: 550 -GKTVIAIAHRLSTISAM-DRLIVLDNG 575
G+ ++ ++HR+ I A+ D + V +G
Sbjct: 189 EGRVILYVSHRMEEIFALCDAITVFKDG 216
Score = 58.4 bits (142), Expect = 6e-09
Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 22/219 (10%)
Query: 380 SLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS-NVSQESLREQIGM 438
S +++ GE +GL G GAG+S + LL G++ +DG+ I ++++R I +
Sbjct: 273 SFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIML 332
Query: 439 VTQDTS----LLHRSIRDNI-LYGRPDASECELF-NAAKCAE-ADIFIKSL---TDEHGR 488
+D + S+ DNI + R N AE AD FI+SL T +
Sbjct: 333 CPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPSREQ 392
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
+ LSGG +Q+ + R + ++ ++LLDE T +D A+ I +Y L
Sbjct: 393 L---------IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELA 443
Query: 549 K-GKTVIAIAHRL-STISAMDRLIVLDNGCVAEEGSHLD 585
G V+ ++ L + DR++V+ G +A E +
Sbjct: 444 AQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQ 482
>gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug
resistance-like (PDR) subfamily G of ATP-binding
cassette transporters. The pleiotropic drug resistance
(PDR) is a well-described phenomenon occurring in fungi
and shares several similarities with processes in
bacteria and higher eukaryotes. This PDR subfamily
represents domain I of its (ABC-IM)2 organization. ABC
transporters are a large family of proteins involved in
the transport of a wide variety of different compounds
including sugars, ions, peptides, and more complex
organic molecules. The nucleotide binding domain shows
the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 192
Score = 66.1 bits (162), Expect = 2e-12
Identities = 59/223 (26%), Positives = 98/223 (43%), Gaps = 52/223 (23%)
Query: 362 FKNVSFSYD---QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY--GE 416
+KN++++ K ++NN+S ++PG L+G SGAGK+T+ ++L GE
Sbjct: 6 WKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGE 65
Query: 417 ILIDGQNISNVSQESLREQIGMVTQ-DTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
ILI+G+ + ++ + G V Q D + ++R E F+A
Sbjct: 66 ILINGRPL----DKNFQRSTGYVEQQDVHSPNLTVR-----------EALRFSAL----- 105
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
++ L+ E QR+R+ I + IL LDE TS LDS+
Sbjct: 106 ---LRGLSVE--------------------QRKRLTIGVELAAKPSILFLDEPTSGLDSQ 142
Query: 536 AEIAIQKSLYNL-MKGKTVIAIAHRLS--TISAMDRLIVLDNG 575
A I + L L G+ ++ H+ S DRL++L G
Sbjct: 143 AAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRG 185
>gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL.
Members of this family are the PhnL protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated C-P lysase complex. This protein
(PhnL) and the adjacent-encoded PhnK (TIGR02323)
resemble transporter ATP-binding proteins but are
suggested, based on mutatgenesis studies, to be part of
this C-P lyase complex rather than part of a transporter
per se.
Length = 224
Score = 66.6 bits (163), Expect = 2e-12
Identities = 58/199 (29%), Positives = 91/199 (45%), Gaps = 29/199 (14%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN-ISNVSQESLR 433
++ N+SLT+ GE + L G SGAGKST+ L Y G IL+ + +++Q S R
Sbjct: 23 VLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASPR 82
Query: 434 E-------QIGMVTQDTSLLHR-SIRD-----NILYGRPDASECELFNAAKCAEADIFIK 480
E IG V+Q ++ R S + + G P AA+ ++ +
Sbjct: 83 EVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPRE-------AARARARELLAR 135
Query: 481 SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAI 540
E A SGG++QR+ IAR + + PILLLDE T++LD+ +
Sbjct: 136 LNIPERLWHLPPA-------TFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVV 188
Query: 541 QKSLYNLM-KGKTVIAIAH 558
+ + +G +I I H
Sbjct: 189 VELIAEAKARGAALIGIFH 207
>gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding
cassette component of monosaccharide transport system.
This family represents domain II of the carbohydrate
uptake proteins that transport only monosaccharides
(Monos). The Carb_Monos family is involved in the uptake
of monosaccharides, such as pentoses (such as xylose,
arabinose, and ribose) and hexoses (such as xylose,
arabinose, and ribose), that cannot be broken down to
simple sugars by hydrolysis. In members of Carb_Monos
family the single hydrophobic gene product forms a
homodimer, while the ABC protein represents a fusion of
two nucleotide-binding domains. However, it is assumed
that two copies of the ABC domains are present in the
assembled transporter.
Length = 182
Score = 65.5 bits (161), Expect = 2e-12
Identities = 48/211 (22%), Positives = 92/211 (43%), Gaps = 57/211 (27%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS-QESLRE 434
+ ++S ++ GE +G+ G G G++ + L GEI +DG+ ++ S ++++R
Sbjct: 16 VRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIRA 75
Query: 435 QIGMVTQDTS----LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
I V +D +L S+ +NI + SL
Sbjct: 76 GIAYVPEDRKREGLVLDLSVAENIA-----------------------LSSL-------- 104
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-- 548
LSGG +Q++ +AR + ++ +L+LDE T +D + + +Y L+
Sbjct: 105 -----------LSGGNQQKVVLARWLARDPRVLILDEPTRGVD----VGAKAEIYRLIRE 149
Query: 549 ---KGKTVIAIAHRLSTISAM-DRLIVLDNG 575
GK V+ I+ L + + DR++V+ G
Sbjct: 150 LADAGKAVLLISSELDELLGLCDRILVMYEG 180
>gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed.
Length = 251
Score = 66.7 bits (163), Expect = 3e-12
Identities = 61/217 (28%), Positives = 102/217 (47%), Gaps = 46/217 (21%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ +NVS S+ Q+ +++++SL ++PG+ + L+G +GAGKST+ ++L G I
Sbjct: 5 VSLENVSVSFGQRR-VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI-- 61
Query: 420 DGQNISNVSQESLREQIGMVTQ----DTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
LR IG V Q DT+L R L RP + ++ A K +A
Sbjct: 62 -------KRNGKLR--IGYVPQKLYLDTTLPLTVNRFLRL--RPGTKKEDILPALKRVQA 110
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGI-KLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
H+ + + KLSGG+ QR+ +AR +L +L+LDE T +D
Sbjct: 111 -----------------GHLIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDV 153
Query: 535 EAEIAIQKSLYNLMK------GKTVIAIAHRLSTISA 565
++A LY+L+ V+ ++H L + A
Sbjct: 154 NGQVA----LYDLIDQLRRELDCAVLMVSHDLHLVMA 186
>gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding
protein SapF; Provisional.
Length = 267
Score = 66.7 bits (163), Expect = 3e-12
Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 30/226 (13%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
+ LS T++ G+ + ++G +G+GKST+ +L + GE+LID + S R Q
Sbjct: 29 VKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLH-FGDYSYRSQ 87
Query: 436 -IGMVTQD--TSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIK----SLTDEHGR 488
I M+ QD TSL R IL P +L + E I L +H
Sbjct: 88 RIRMIFQDPSTSLNPRQRISQIL-DFPLRLNTDLEPEQR--EKQIIETLRQVGLLPDHA- 143
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
Y H+ L+ GQ+QR+ +AR ++ +++ DEA ++LD ++++ L NLM
Sbjct: 144 -SYYPHM------LAPGQKQRLGLARALILRPKVIIADEALASLD----MSMRSQLINLM 192
Query: 549 ------KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLL 587
+G + I + L + + D+++V+ G V E GS D+L
Sbjct: 193 LELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVL 238
>gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 320
Score = 67.2 bits (164), Expect = 4e-12
Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 33/244 (13%)
Query: 363 KNVSFSYDQKH----LIINNLSLTIQPGEKIGLVGRSGAGKSTI----NNLL------LR 408
KN+ +D+K + +NN+S T + + ++G SG+GKST+ N L+ ++
Sbjct: 25 KNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQ 84
Query: 409 FYDIKYG-EILIDGQNISNVSQE-----SLREQIGMVTQ--DTSLLHRSIRDNILYGRPD 460
DI G + + S++ LR ++ MV Q + L +I +I++G P
Sbjct: 85 VGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG-PV 143
Query: 461 ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNA 520
A + A K A K ++ G D+++ LSGGQ++R+AIA ++
Sbjct: 144 ALGVKKSEAKKLA------KFYLNKMGLD--DSYLERSPFGLSGGQKRRVAIAGILAIQP 195
Query: 521 PILLLDEATSALDSEAE-IAIQKSLYNLMKGKTVIAIAHRLSTI-SAMDRLIVLDNGCVA 578
IL+ DE T+ LD + E +Q L KTV I H + + D +IV+D G +
Sbjct: 196 EILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
Query: 579 EEGS 582
+ G+
Sbjct: 256 KTGT 259
>gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection
ABC transporter, ATP-binding subunit. Model TIGR03731
represents the family of all lantibiotics related to
gallidermin, including epidermin, mutatin, and nisin.
This protein family describes the ATP-binding subunit of
a gallidermin/epidermin class lantibiotic protection
transporter. It is largely restricted to
gallidermin-family lantibiotic biosynthesis and export
cassettes, but also occurs in orphan transporter
cassettes in species that lack candidate lantibiotic
precursor and synthetase genes.
Length = 223
Score = 65.9 bits (161), Expect = 4e-12
Identities = 67/232 (28%), Positives = 112/232 (48%), Gaps = 40/232 (17%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
KN+S + ++ +NN+SLT+ GL+G +GAGKST+ ++ GEI+ DG
Sbjct: 4 KNLSKRFGKQT-AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG- 61
Query: 423 NISNVSQESLREQIGMVTQDTSLL-HRSIRDNI-----LYGRPDASECELFNAAKCAEAD 476
+++ L + IG + + L + + R+N+ L G PD+ E+ N
Sbjct: 62 --HPWTRKDLHK-IGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLN-------- 110
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
I LT+ +K S G +QR+ IA +L + +L+LDE T+ LD
Sbjct: 111 --IVDLTNTGKKKAKQ---------FSLGMKQRLGIAIALLNHPKLLILDEPTNGLDP-- 157
Query: 537 EIAIQKSLYNLM-----KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
I IQ+ L L+ +G TVI +H LS + + D + ++ G + +G
Sbjct: 158 -IGIQE-LRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGK 207
>gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase
[Posttranslational modification, protein turnover,
chaperones].
Length = 251
Score = 65.7 bits (161), Expect = 7e-12
Identities = 65/248 (26%), Positives = 113/248 (45%), Gaps = 34/248 (13%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--YDIKYGEILID 420
K++ + K I+ ++LT++ GE ++G +G+GKST+ ++ Y++ GEIL D
Sbjct: 7 KDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFD 66
Query: 421 GQNISNVS-QESLREQIGMVTQD--------TSLLHRSIRDNILYGRPDASECELFNAAK 471
G++I +S E R I + Q S R+ + R E
Sbjct: 67 GEDILELSPDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPE-------- 118
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGI--KLSGGQRQRIAIARVILKNAPILLLDEAT 529
FIK L ++ G D E + SGG+++R I +++L + +LDE
Sbjct: 119 ------FIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPD 172
Query: 530 SALDSEAEIAIQKSLYNLMK--GKTVIAIAH--RLSTISAMDRLIVLDNGCVAEEG--SH 583
S LD +A + I N ++ G+ V+ I H RL D++ VL +G + + G
Sbjct: 173 SGLDIDA-LKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDPEL 231
Query: 584 LDLLKKNG 591
+ L++ G
Sbjct: 232 AEELEEKG 239
>gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein;
Provisional.
Length = 352
Score = 66.1 bits (162), Expect = 1e-11
Identities = 66/232 (28%), Positives = 98/232 (42%), Gaps = 58/232 (25%)
Query: 378 NLSLTIQ---PGEKI-GLVGRSGAGKSTINNLLLRFYDIKYGEI------LIDGQNISNV 427
+L LT+ P + I + GRSGAGK+++ N + + G I L D + +
Sbjct: 12 DLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71
Query: 428 SQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEH 486
E R IG V QD L H +R N+ YG S F+ I +L
Sbjct: 72 PPEKRR--IGYVFQDARLFPHYKVRGNLRYGM-AKSMVAQFDK---------IVALL--- 116
Query: 487 GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD------------- 533
G + + + LSGG++QR+AI R +L +LL+DE ++LD
Sbjct: 117 ---GIEPLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLER 173
Query: 534 --SEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
E I I LY ++H L I + DR++VL+ G V G
Sbjct: 174 LAREINIPI---LY----------VSHSLDEILRLADRVVVLEQGKVKAFGP 212
>gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase
component [General function prediction only].
Length = 249
Score = 64.7 bits (158), Expect = 1e-11
Identities = 60/239 (25%), Positives = 111/239 (46%), Gaps = 24/239 (10%)
Query: 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ- 422
VS S+ +N+LS ++ PGE L+G +GAGK+T+ +++ + GE+L DG
Sbjct: 10 GVSVSFGGFK-ALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDT 68
Query: 423 NISNVSQ-ESLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECEL-FNAAKCAEADIFI 479
+++ + + R IG Q ++ ++R+N+ EL N K A +F
Sbjct: 69 DLTKLPEHRIARAGIGRKFQKPTVFENLTVRENL----------ELALNRDKSVFASLFA 118
Query: 480 KSLTDEHGR-------KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
+ +E R G LS GQ+Q + I ++ ++ +LLLDE + +
Sbjct: 119 RLRAEERRRIDELLATIGLGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGM 178
Query: 533 DSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKN 590
+ L +L +++ + H + + + D++ VL G V EGS LD ++ +
Sbjct: 179 TDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGS-LDEVQND 236
>gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 237
Score = 64.5 bits (157), Expect = 1e-11
Identities = 63/233 (27%), Positives = 108/233 (46%), Gaps = 22/233 (9%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
F VS Y K ++ +SL I GE + L+G +GAGK+T+ L G I+ DG
Sbjct: 8 FDKVSAHYG-KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDG 66
Query: 422 QNISN-VSQESLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFI 479
++I++ + + +RE + +V + + R ++ +N+ G A + F ++F
Sbjct: 67 KDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAER-DQFQERIKWVYELFP 125
Query: 480 KSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIA 539
+ R G +SGG++Q +AI R ++ +LLLDE + L A I
Sbjct: 126 RLHERRIQRAG----------TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APII 172
Query: 540 IQKSLYNLMK----GKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLL 587
IQ+ + + G T+ + + + DR VL+NG V E + LL
Sbjct: 173 IQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALL 225
>gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis
ATP-binding export protein. CcmA, the ATP-binding
component of the bacterial CcmAB transporter. The CCM
family is involved in bacterial cytochrome c biogenesis.
Cytochrome c maturation in E. coli requires the ccm
operon, which encodes eight membrane proteins
(CcmABCDEFGH). CcmE is a periplasmic heme chaperon that
binds heme covalently and transfers it onto
apocytochrome c in the presence of CcmF, CcmG, and CcmH.
The CcmAB proteins represent an ABC transporter and the
CcmCD proteins participate in heme transfer to CcmE.
Length = 201
Score = 63.7 bits (155), Expect = 1e-11
Identities = 44/182 (24%), Positives = 81/182 (44%), Gaps = 19/182 (10%)
Query: 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGM 438
LS T+ GE + + G +G+GK+T+ +L G +L++G + R + +
Sbjct: 19 LSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARGLLYL 78
Query: 439 VTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEH 498
S+ +N+ + D S+ ++ A G G++
Sbjct: 79 GHAPGIKTTLSVLENLRFWHADHSDEQVEEA-------------LARVGLNGFE-DRPVA 124
Query: 499 GIKLSGGQRQRIAIARVILKNAPILLLDEATSALD--SEAEIAIQKSLYNLMKGKTVIAI 556
+LS GQ++R+A+AR++L P+ +LDE T+ALD A A + + +G V+
Sbjct: 125 --QLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAGVARFAEAMAGH-CARGGMVVLT 181
Query: 557 AH 558
H
Sbjct: 182 TH 183
>gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding
subunit; Provisional.
Length = 255
Score = 63.9 bits (156), Expect = 3e-11
Identities = 59/224 (26%), Positives = 104/224 (46%), Gaps = 34/224 (15%)
Query: 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLR 433
L +NN++L ++ E + L+G +GAGK+T+ N L FY G IL+ GQ+I + +
Sbjct: 19 LAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA 78
Query: 434 EQIGMV------------TQDTSLL---HRSIRDNILYGRPDASECELFN--AAKCAEAD 476
G+V T +LL H+ ++ + G L A + AE++
Sbjct: 79 RM-GVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSG--------LLKTPAFRRAESE 129
Query: 477 IFIKSLT--DEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
++ T + R G H L+ GQ++R+ IAR ++ IL+LDE + L+
Sbjct: 130 ALDRAATWLE---RVGLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNP 186
Query: 535 EAEIAIQKSLYNLMK--GKTVIAIAHRLSTI-SAMDRLIVLDNG 575
+ + + + L TV+ I H + + DR+ V++ G
Sbjct: 187 KETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230
>gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted
acetyltransferase domain [General function prediction
only].
Length = 593
Score = 65.6 bits (160), Expect = 4e-11
Identities = 52/215 (24%), Positives = 100/215 (46%), Gaps = 37/215 (17%)
Query: 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--------YDIKYGEILIDGQNISNVSQ 429
NL+L I+PG+ + +VG+SGAGK+T+ ++L Y G++ + +S +
Sbjct: 401 NLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIP 460
Query: 430 ESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
+ G VT + +R G +A+ E+ N A ++A ++ + ++
Sbjct: 461 GEYEPEFGEVT-----ILEHLRSKT--GDLNAAV-EILNRAGLSDAVLYRRKFSE----- 507
Query: 490 GYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL-- 547
LS GQ++R +A+++ + +LL+DE + LD + + + + L
Sbjct: 508 ------------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAR 555
Query: 548 MKGKTVIAIAHRLSTISAM--DRLIVLDNGCVAEE 580
G T+I + HR +A+ D LI++ G V
Sbjct: 556 EAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVN 590
>gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter. This
model describes the photoreceptor protein (rim protein)
in eukaryotes. It is the member of ABC transporter
superfamily. Rim protein is a membrane glycoprotein which
is localized in the photoreceptor outer segment discs.
Mutation/s in its genetic loci is implicated in the
recessive Stargardt's disease [Transport and binding
proteins, Other].
Length = 2272
Score = 65.8 bits (160), Expect = 5e-11
Identities = 57/230 (24%), Positives = 112/230 (48%), Gaps = 21/230 (9%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
++ L++T + +G +GAGK+T ++L G +L+ G++I + +++R+
Sbjct: 946 VDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004
Query: 436 IGMVTQDTSLLHR-SIRDNIL-YGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA 493
+GM Q L H ++ ++IL Y + E EA + ++++ ++ G
Sbjct: 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWE--------EAQLEMEAMLED---TGLHH 1053
Query: 494 HVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTV 553
E LSGG ++++++A + +A +++LDE TS +D + +I L G+T+
Sbjct: 1054 KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTI 1113
Query: 554 IAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKN----GLYSRLWR 598
I H + + DR+ ++ G + G+ L L KN G Y L R
Sbjct: 1114 IMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFL--KNCFGTGFYLTLVR 1161
Score = 55.8 bits (134), Expect = 5e-08
Identities = 49/207 (23%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI-SNVSQESLRE 434
++ L + ++PGE GL+G +GAGK+T +L + G+ + G++I +N+S + +
Sbjct: 1955 VDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISD--VHQ 2012
Query: 435 QIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAE----ADIFIKSLTDEHGRKG 490
+G Q ++ D++L GR E A+ I+SL G
Sbjct: 2013 NMGYCPQFDAI------DDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSL-------G 2059
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK- 549
+ SGG +++++ A ++ P++LLDE T+ +D +A + ++ ++++
Sbjct: 2060 LSLYADRLAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIRE 2119
Query: 550 GKTVIAIAHRLSTISAM-DRLIVLDNG 575
G+ V+ +H + A+ RL ++ G
Sbjct: 2120 GRAVVLTSHSMEECEALCTRLAIMVKG 2146
>gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein;
Provisional.
Length = 638
Score = 64.4 bits (157), Expect = 8e-11
Identities = 58/204 (28%), Positives = 93/204 (45%), Gaps = 33/204 (16%)
Query: 374 LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLR 433
++++N + TI PG+K+GLVG++G GKST+ LL EI DG + + L
Sbjct: 15 VLLDNATATINPGQKVGLVGKNGCGKSTLLALL-------KNEISADGGSYTFPGNWQL- 66
Query: 434 EQIGMVTQDTSLLHRSIRDNILYG----RPDASECELFNAAKCAEADIFIKSLTDE---- 485
V Q+T L + + ++ G R ++ N A I D
Sbjct: 67 ---AWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAW 123
Query: 486 ----------HGRKGYDAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLDEATSALDS 534
HG G+ E + SGG R R+ +A+ ++ + +LLLDE T+ LD
Sbjct: 124 TIRSRAASLLHGL-GFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDL 182
Query: 535 EAEIAIQKSLYNLMKGKTVIAIAH 558
+A I ++K L + T+I I+H
Sbjct: 183 DAVIWLEKWLKSY--QGTLILISH 204
Score = 60.6 bits (147), Expect = 1e-09
Identities = 62/215 (28%), Positives = 102/215 (47%), Gaps = 29/215 (13%)
Query: 365 VSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI-LIDGQN 423
VS Y + +I++++ L + PG +IGL+GR+GAGKST+ LL GEI L G
Sbjct: 318 VSAGYGDR-IILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIK 376
Query: 424 ISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLT 483
+ +Q L + R D E L + A+ A ++ + L
Sbjct: 377 LGYFAQHQLE----------------------FLRAD--ESPLQHLARLAPQEL-EQKLR 411
Query: 484 DEHGRKGYDA-HVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQK 542
D G G+ V E + SGG++ R+ +A ++ + +LLLDE T+ LD + A+ +
Sbjct: 412 DYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTE 471
Query: 543 SLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCV 577
+L + +G V+ R S D L ++ +G V
Sbjct: 472 ALIDF-EGALVVVSHDRHLLRSTTDDLYLVHDGKV 505
>gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation
factor 3, subfamily F. Elongation factor 3 (EF-3) is a
cytosolic protein required by fungal ribosomes for in
vitro protein synthesis and for in vivo growth. EF-3
stimulates the binding of the EF-1: GTP: aa-tRNA ternary
complex to the ribosomal A site by facilitated release
of the deacylated tRNA from the E site. The reaction
requires ATP hydrolysis. EF-3 contains two ATP
nucleotide binding sequence (NBS) motifs. NBSI is
sufficient for the intrinsic ATPase activity. NBSII is
essential for the ribosome-stimulated functions.
Length = 144
Score = 59.4 bits (145), Expect = 1e-10
Identities = 24/46 (52%), Positives = 36/46 (78%), Gaps = 1/46 (2%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL 407
+N+S +Y K L++ ++SLTI PG++IGLVGR+GAGKST+ L+
Sbjct: 3 LENLSKTYGGK-LLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIA 47
Score = 50.1 bits (121), Expect = 2e-07
Identities = 29/79 (36%), Positives = 51/79 (64%), Gaps = 11/79 (13%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKG--KTVIAIAH- 558
LSGG++ R+A+A+++L+N +LLLDE T+ LD E+ ++L +K TVI ++H
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLES----IEALEEALKEYPGTVILVSHD 126
Query: 559 R--LSTISAMDRLIVLDNG 575
R L ++ ++I L++G
Sbjct: 127 RYFLDQVA--TKIIELEDG 143
>gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 200
Score = 60.7 bits (147), Expect = 1e-10
Identities = 48/198 (24%), Positives = 90/198 (45%), Gaps = 19/198 (9%)
Query: 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423
+ F Y ++ +S + G + L G +GAGK+T+ L+ + + GEIL + Q+
Sbjct: 6 ELDFDY-HDQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQS 64
Query: 424 ISNVSQESLREQIGMVTQDTSL-LHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSL 482
I + ++Q+ V + + + ++R+N LY ++ + +
Sbjct: 65 IKK-DLCTYQKQLCFVGHRSGINPYLTLRENCLY--------DIHFSPGAVGITELCRLF 115
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA-EIAIQ 541
+ EH D G LS GQ++++A+ R+ + A + LLDE ALD + I
Sbjct: 116 SLEH---LIDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIIT 168
Query: 542 KSLYNLMKGKTVIAIAHR 559
K + KG V+ +H+
Sbjct: 169 KIQEHRAKGGAVLLTSHQ 186
>gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK.
Members of this family are the PhnK protein of C-P
lyase systems for utilization of phosphonates. These
systems resemble phosphonatase-based systems in having a
three component ABC transporter, where TIGR01097 is the
permease, TIGR01098 is the phosphonates binding protein,
and TIGR02315 is the ATP-binding cassette (ABC) protein.
They differ, however, in having, typically, ten or more
additional genes, many of which are believed to form a
membrane-associated complex. This protein (PhnK) and the
adjacent-encoded PhnL resemble transporter ATP-binding
proteins but are suggested, based on mutatgenesis
studies, to be part of this complex rather than part of
a transporter per se [Central intermediary metabolism,
Phosphorus compounds].
Length = 253
Score = 61.4 bits (149), Expect = 2e-10
Identities = 54/223 (24%), Positives = 97/223 (43%), Gaps = 29/223 (13%)
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID--GQNISNVSQESLRE 434
++S + PGE +G+VG SG+GKST+ L +G + Q S E
Sbjct: 20 RDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79
Query: 435 QIGMVTQDTSLLHRSIRDNILYG---------RPDASECELFNAAKCAEADIFIKSLTDE 485
+ ++ + +H++ RD + R A + + A A +++ + +
Sbjct: 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR-ATAQDWLEEVEID 138
Query: 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
R + + SGG +QR+ IAR ++ ++ +DE T LD +++Q L
Sbjct: 139 PTR------IDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD----VSVQARLL 188
Query: 546 NLMKGK------TVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
+L++G VI + H L + RL+V+ G V E G
Sbjct: 189 DLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231
>gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 258
Score = 61.7 bits (150), Expect = 2e-10
Identities = 51/218 (23%), Positives = 94/218 (43%), Gaps = 21/218 (9%)
Query: 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID--GQNISNVSQESLREQ 435
++S + PGE +G+VG SG+GK+T+ + G + ++ S E+
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAER 83
Query: 436 IGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV 495
++ + +H++ RD + R S A ++ E + +
Sbjct: 84 RRLLRTEWGFVHQNPRDGL---RMQVSAGGNIGERLMAIGARHYGNIRAEAQDWLEEVEI 140
Query: 496 GEHGI-----KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKG 550
I SGG +QR+ IAR ++ ++ +DE T LD +++Q L +L++G
Sbjct: 141 DLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLD----VSVQARLLDLLRG 196
Query: 551 ------KTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
V+ + H L+ + DRL+V+ G V E G
Sbjct: 197 LVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESG 234
>gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding
protein LsrA; Provisional.
Length = 510
Score = 63.1 bits (154), Expect = 2e-10
Identities = 54/209 (25%), Positives = 97/209 (46%), Gaps = 20/209 (9%)
Query: 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG- 437
+ T+ GE L+G +GAGKST+ ++ G + I G + ++ + Q+G
Sbjct: 30 IDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLT-PAKAHQLGI 88
Query: 438 -MVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV 495
+V Q+ L + S+++NIL+G P A + D+
Sbjct: 89 YLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAALGCQLD----------LDSSA 138
Query: 496 GEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD-SEAEIAIQKSLYNLMKGKTVI 554
G L RQ + I R +++++ IL+LDE T++L +E E + L +G ++
Sbjct: 139 G----SLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIV 194
Query: 555 AIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
I+H+L I + DR+ V+ +G +A G
Sbjct: 195 FISHKLPEIRQLADRISVMRDGTIALSGK 223
Score = 55.1 bits (133), Expect = 7e-08
Identities = 52/225 (23%), Positives = 98/225 (43%), Gaps = 43/225 (19%)
Query: 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437
N+SL ++ GE +GL G GAG++ + L + G I+++G+ I+ +S R G
Sbjct: 281 NISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQ-RLARG 339
Query: 438 MV-----TQDTSL-LHRSIRDNI---LYGRP--------DASECELFNAA---KCAEADI 477
+V Q + L L + N+ + R + + E + A K A+
Sbjct: 340 LVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNHAEQ 399
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
++ LSGG +Q++ IA+ + + +L++DE T +D A
Sbjct: 400 AART--------------------LSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVSAR 439
Query: 538 IAIQKSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEE 580
I + + ++ V+ I+ L I M DR++V+ G ++
Sbjct: 440 NDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGA 484
>gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD;
Provisional.
Length = 254
Score = 61.3 bits (149), Expect = 2e-10
Identities = 58/224 (25%), Positives = 105/224 (46%), Gaps = 25/224 (11%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKS-TINNLLLRFYDI-------KYGEILIDGQNISN 426
+++ +SLT+Q G + LVG SG+GKS T L I G +L+DG+
Sbjct: 18 LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAAL----GILPAGVRQTAGRVLLDGKP--- 70
Query: 427 VSQESLR-EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDE 485
V+ +LR +I + Q+ RS + + A E K A+ +L +
Sbjct: 71 VAPCALRGRKIATIMQNP----RSAFNPLHTMHTHARET-CLALGKPADDATLTAAL-EA 124
Query: 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
G + + + ++SGG QR+ IA +L AP ++ DE T+ LD A+ I L
Sbjct: 125 VGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLE 184
Query: 546 NLM--KGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDL 586
+++ + ++ + H + ++ + D + V+ +G + E+G L
Sbjct: 185 SIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETL 228
>gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog
[General function prediction only].
Length = 591
Score = 63.1 bits (154), Expect = 2e-10
Identities = 60/207 (28%), Positives = 87/207 (42%), Gaps = 38/207 (18%)
Query: 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQ 441
I GE IG++G +G GK+T LL IK E + +S Q + G V
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLLAG--VIKPDEGSEEDLKVSYKPQYISPDYDGTVED 420
Query: 442 DTSLLHRSIRDNIL--YGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG 499
LL +IR Y + + +K L E + V E
Sbjct: 421 ---LLRSAIRSAFGSSYFKTE-----------------IVKPLNLE---DLLERPVDE-- 455
Query: 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGKTVIAIA 557
LSGG+ QR+AIA + + A + LLDE ++ LD E I + K + + KT + +
Sbjct: 456 --LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVD 513
Query: 558 HRLSTISAM-DRLIVLDNGCVAEEGSH 583
H + I + DRLIV + E G H
Sbjct: 514 HDIYMIDYVSDRLIVFE----GEPGKH 536
Score = 52.3 bits (126), Expect = 5e-07
Identities = 24/79 (30%), Positives = 41/79 (51%), Gaps = 6/79 (7%)
Query: 501 KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHR 559
+LSGG+ QR+AIA +L++A + DE +S LD + + + L + GK VI + H
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHD 272
Query: 560 LSTISAMDRLIVLDNGCVA 578
L+ + + D +
Sbjct: 273 LAVLDYLS-----DFVHIL 286
Score = 30.7 bits (70), Expect = 2.7
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 382 TIQPGEKIGLVGRSGAGKSTINNLL 406
T +PG+ +G++G +G GKST +L
Sbjct: 96 TPRPGKVVGILGPNGIGKSTALKIL 120
>gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase
component [Coenzyme metabolism].
Length = 248
Score = 61.0 bits (148), Expect = 2e-10
Identities = 65/228 (28%), Positives = 101/228 (44%), Gaps = 30/228 (13%)
Query: 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK--YGEILIDGQNISNVSQESL-REQ 435
LS ++ GE + LVG +GAGKST LL R + G I GQ + S L R +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKST---LLARMAGMTSGSGSIQFAGQPLEAWSATELARHR 74
Query: 436 IGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHV 495
+ Q T + + +PD + EL N A +L D+ GR
Sbjct: 75 AYLSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDV----AGAL--ALDDKLGRSTN---- 124
Query: 496 GEHGIKLSGGQRQRIAIARVILKNAP-------ILLLDEATSALDSEAEIAIQKSLYNLM 548
+LSGG+ QR+ +A V+L+ P +LLLDE ++LD + A+ + L L
Sbjct: 125 -----QLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALC 179
Query: 549 K-GKTVIAIAHRLS-TISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYS 594
+ G ++ +H L+ T+ R +L G + G ++L L
Sbjct: 180 QQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPVLAQ 227
>gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase
L inhibitor. The ABC ATPase RNase L inhibitor (RLI) is
a key enzyme in ribosomal biogenesis, formation of
translation preinitiation complexes, and assembly of HIV
capsids. RLI's are not transport proteins, and thus
cluster with a group of soluble proteins that lack the
transmembrane components commonly found in other members
of the family. Structurally, RLI's have an N-terminal
Fe-S domain and two nucleotide-binding domains, which
are arranged to form two composite active sites in their
interface cleft. RLI is one of the most conserved
enzymes between archaea and eukaryotes with a sequence
identity more than 48%. The high degree of evolutionary
conservation suggests that RLI performs a central role
in archaeal and eukaryotic physiology.
Length = 177
Score = 59.1 bits (143), Expect = 3e-10
Identities = 28/77 (36%), Positives = 46/77 (59%), Gaps = 3/77 (3%)
Query: 500 IKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL-MKG-KTVIAIA 557
I LSGG+ QR+AIA +L+NA L DE ++ LD E + +++ L +G KT + +
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 558 HRLSTISAM-DRLIVLD 573
H L+ + + DR+ V +
Sbjct: 130 HDLAVLDYLSDRIHVFE 146
>gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug
resistance-like subfamily G of ATP-binding cassette
transporters. The pleiotropic drug resistance (PDR) is
a well-described phenomenon occurring in fungi and
shares several similarities with processes in bacteria
and higher eukaryotes. This PDR subfamily represents
domain I of its (ABC-IM)2 organization. ABC transporters
are a large family of proteins involved in the transport
of a wide variety of different compounds including
sugars, ions, peptides, and more complex organic
molecules. The nucleotide-binding domain shows the
highest similarity between all members of the family.
ABC transporters are a subset of nucleotide hydrolases
that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 202
Score = 59.6 bits (145), Expect = 4e-10
Identities = 52/214 (24%), Positives = 89/214 (41%), Gaps = 44/214 (20%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE 430
K I+ + S ++PGE + ++GR G+G ST LL+ + + NVS E
Sbjct: 18 SKIPILKDFSGVVKPGEMVLVLGRPGSGCST----LLK---------ALANRTEGNVSVE 64
Query: 431 SLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEH---- 486
I N + + A + +E D+ +LT
Sbjct: 65 -----------------GDIHYNGIPYKEFAEKYPG-EIIYVSEEDVHFPTLTVRETLDF 106
Query: 487 -GRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLY 545
R + V GI SGG+R+R++IA ++ A +L D +T LDS + I K +
Sbjct: 107 ALRCKGNEFV--RGI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSSTALEILKCIR 162
Query: 546 NL---MKGKTVIAIAHRLSTISAM-DRLIVLDNG 575
+ +K T +++ I + D+++VL G
Sbjct: 163 TMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEG 196
>gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit;
Provisional.
Length = 271
Score = 60.4 bits (146), Expect = 5e-10
Identities = 64/225 (28%), Positives = 100/225 (44%), Gaps = 23/225 (10%)
Query: 367 FSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ--NI 424
F Y Q ++ L+L GLVG +G GKST+ L + G +L G+ +
Sbjct: 9 FRY-QDEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDY 67
Query: 425 SNVSQESLREQIGMVTQD--TSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSL 482
S +LR+Q+ V QD + + I +I + + E + EA +L
Sbjct: 68 SKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEA----LTL 123
Query: 483 TDEHGRKGYDAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE---I 538
D H I+ LS GQ++R+AIA ++ A LLLDE T+ LD I
Sbjct: 124 VDAQ-------HFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDPAGRTQMI 176
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
AI + + + +G VI +H + I + D + VL G + G+
Sbjct: 177 AIIRRI--VAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGA 219
>gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC. SufC is part of the SUF
system, shown in E. coli to consist of six proteins and
believed to act in Fe-S cluster formation during
oxidative stress. SufC forms a complex with SufB and
SufD. SufC belongs to the ATP-binding cassette
transporter family (pfam00005) but is no longer thought
to be part of a transporter. The complex is reported as
cytosolic (PMID:12554644) or associated with the
membrane (PMID:11943156). The SUF system also includes a
cysteine desulfurase (SufS, enhanced by SufE) and a
probable iron-sulfur cluster assembly scaffold protein,
SufA [Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 243
Score = 59.6 bits (145), Expect = 6e-10
Identities = 56/237 (23%), Positives = 103/237 (43%), Gaps = 31/237 (13%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL--RFYDIKYGEILID 420
K++ S + K I+ ++LT++ GE ++G +G+GKST++ + Y++ G IL
Sbjct: 4 KDLHVSVEDKE-ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFK 62
Query: 421 GQNISNVS-QESLR----------EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNA 469
GQ++ + E R E+I V+ L ++ N +L +
Sbjct: 63 GQDLLELEPDERARAGLFLAFQYPEEIPGVSNLE-FLRSAL--NARRSARGEEPLDLLD- 118
Query: 470 AKCAEADIFIKSLTDEHGRKGYDAHVGEHGIK--LSGGQRQRIAIARVILKNAPILLLDE 527
F+K L + G D + SGG+++R I ++ L + +LDE
Sbjct: 119 --------FLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDE 170
Query: 528 ATSALDSEAEIAIQKSLYNLM-KGKTVIAIAH--RLSTISAMDRLIVLDNGCVAEEG 581
S LD +A + + + L ++ + I H RL D + VL +G + + G
Sbjct: 171 IDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
>gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit;
Provisional.
Length = 326
Score = 59.8 bits (145), Expect = 1e-09
Identities = 62/252 (24%), Positives = 109/252 (43%), Gaps = 70/252 (27%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYD----IKYGEILIDGQNISNVSQES 431
++ +S +++ GE +G+VG SG+GKS + ++ D + ++ +GQ++ +S++
Sbjct: 23 VDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82
Query: 432 LREQIG----MVTQD--TSL---------------LH----------RSIRDNILYGRPD 460
R +G M+ QD TSL +H R+I G PD
Sbjct: 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPD 142
Query: 461 -ASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKN 519
AS +++ H +LSGG QR+ IA I
Sbjct: 143 PASRLDVY-------------------------PH------QLSGGMSQRVMIAMAIACR 171
Query: 520 APILLLDEATSALDSEAEIAIQKSLYNLMKGK--TVIAIAHRLSTIS-AMDRLIVLDNGC 576
+L+ DE T+ALD + I + L L + + ++ I H L+ ++ A ++IV+ G
Sbjct: 172 PKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQ 231
Query: 577 VAEEGSHLDLLK 588
V E G D+ +
Sbjct: 232 VVETGKAHDIFR 243
>gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional.
Length = 718
Score = 59.1 bits (143), Expect = 4e-09
Identities = 69/241 (28%), Positives = 105/241 (43%), Gaps = 47/241 (19%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I F + SF Y L+ NL+ I +I +VG +G GKSTI L+ GE+
Sbjct: 509 ISFSDASFGYPGGPLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLI-------SGEL-- 559
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFI 479
Q S S + ++ + +Q H D + D S L +C
Sbjct: 560 --QPSSGTVFRSAKVRMAVFSQ-----HHV--DGL-----DLSSNPLLYMMRC------F 599
Query: 480 KSLTDEHGRKGYDAHVGEHGIK----------LSGGQRQRIAIARVILKNAPILLLDEAT 529
+ ++ R AH+G G+ LSGGQ+ R+A A++ K ILLLDE +
Sbjct: 600 PGVPEQKLR----AHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPS 655
Query: 530 SALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTIS-AMDRLIVLDNGCVAE-EGSHLDLL 587
+ LD +A A+ + L G V+ ++H IS ++D L V+ G V G+ D
Sbjct: 656 NHLDLDAVEALIQGLVLFQGG--VLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713
Query: 588 K 588
K
Sbjct: 714 K 714
Score = 53.3 bits (128), Expect = 2e-07
Identities = 64/235 (27%), Positives = 97/235 (41%), Gaps = 49/235 (20%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I +N S S + LI + S+T+ G GLVGR+G GK+T LR+ + I
Sbjct: 178 IHMENFSISVGGRDLI-VDASVTLAFGRHYGLVGRNGTGKTT----FLRYMAMH----AI 228
Query: 420 DG--QN--ISNVSQESLREQIGMV-------TQDTSLLHRSIRDNILYGRPDASECELFN 468
DG +N I +V QE + + + + T LL + ++ + +
Sbjct: 229 DGIPKNCQILHVEQEVVGDDTTALQCVLNTDIERTQLLEEEAQ--LVAQQRELEFETETG 286
Query: 469 AAKCAEADIFIKSLTDEHGRKGY------DAHVGEH-------GIKL------------S 503
K A D K + + Y DA+ E G+ S
Sbjct: 287 KGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILAGLSFTPEMQVKATKTFS 346
Query: 504 GGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAH 558
GG R RIA+AR + +LLLDE T+ LD A + ++ Y L KT I ++H
Sbjct: 347 GGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLET--YLLKWPKTFIVVSH 399
>gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional.
Length = 590
Score = 59.1 bits (144), Expect = 5e-09
Identities = 53/203 (26%), Positives = 89/203 (43%), Gaps = 46/203 (22%)
Query: 382 TIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS---NVS---QESLREQ 435
I GE IG+VG +G GK+T F + G + D + +S Q +
Sbjct: 361 EIYEGEVIGIVGPNGIGKTT-------FAKLLAGVLKPDEGEVDPELKISYKPQYIKPDY 413
Query: 436 IGMVTQDTSLLHRSIRDNILYGRPDAS--ECELFNAAKCAEADIFIKSLTDEHGRKGYDA 493
G V L RSI D++ +S + E+ + K++ D
Sbjct: 414 DGTV----EDLLRSITDDL-----GSSYYKSEIIK--PLQLERLLDKNVKD--------- 453
Query: 494 HVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM--KGK 551
LSGG+ QR+AIA + ++A + LLDE ++ LD E +A+ K++ + +
Sbjct: 454 --------LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREA 505
Query: 552 TVIAIAHRLSTISAM-DRLIVLD 573
T + + H + I + DRL+V +
Sbjct: 506 TALVVDHDIYMIDYISDRLMVFE 528
Score = 55.2 bits (134), Expect = 6e-08
Identities = 33/100 (33%), Positives = 48/100 (48%), Gaps = 20/100 (20%)
Query: 483 TDEHGRKGYDAHVGEHGIK---------LSGGQRQRIAIARVILKNAPILLLDEATSALD 533
DE G+ D V G++ LSGG+ QR+AIA +L++A DE TS LD
Sbjct: 187 VDERGK--LDEVVERLGLENILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLD 244
Query: 534 SEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLD 573
+ + + + L +GK V+ + H D L VLD
Sbjct: 245 IRQRLNVARLIRELAEGKYVLVVEH--------D-LAVLD 275
Score = 31.3 bits (72), Expect = 1.8
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 382 TIQPGEKIGLVGRSGAGKSTINNLL 406
+ G+ G++G +G GK+T +L
Sbjct: 95 IPKEGKVTGILGPNGIGKTTAVKIL 119
>gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 204
Score = 54.8 bits (133), Expect = 1e-08
Identities = 47/184 (25%), Positives = 79/184 (42%), Gaps = 53/184 (28%)
Query: 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKYGEILIDGQNISNVS 428
++ + LS T+ GE + + G +GAGK++ LLR GE+L G+ I
Sbjct: 14 RILFSGLSFTLNAGELVQIEGPNGAGKTS----LLRILAGLARPDAGEVLWQGEPIR--- 66
Query: 429 QESLREQIGMVTQDTSLLHRSIRDNILY-GRPDASECEL-------FNAA--KCAEADIF 478
R++ H+ ++LY G + EL F + +
Sbjct: 67 --RQRDE----------YHQ----DLLYLGHQPGIKTELTALENLRFYQRLHGPGDDEAL 110
Query: 479 IKSLTDEHGRKGYDAHVGEHGIK------LSGGQRQRIAIARVILKNAPILLLDEATSAL 532
++L A VG G + LS GQ++R+A+AR+ L AP+ +LDE +A+
Sbjct: 111 WEAL----------AQVGLAGFEDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAI 160
Query: 533 DSEA 536
D +
Sbjct: 161 DKQG 164
>gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in
Fe-S cluster assembly, ATPase component. Biosynthesis
of iron-sulfur clusters (Fe-S) depends on multi-protein
systems. The SUF system of E. coli and Erwinia
chrysanthemi is important for Fe-S biogenesis under
stressful conditions. The SUF system is made of six
proteins: SufC is an atypical cytoplasmic ABC-ATPase,
which forms a complex with SufB and SufD; SufA plays the
role of a scaffold protein for assembly of iron-sulfur
clusters and delivery to target proteins; SufS is a
cysteine desulfurase which mobilizes the sulfur atom
from cysteine and provides it to the cluster; SufE has
no associated function yet.
Length = 200
Score = 52.9 bits (128), Expect = 6e-08
Identities = 27/82 (32%), Positives = 48/82 (58%), Gaps = 4/82 (4%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--YDIKYGEILID 420
K++ S K I+ ++LTI+ GE L+G +G+GKST+ ++ Y++ GEIL
Sbjct: 4 KDLHVSVGGKE-ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFK 62
Query: 421 GQNISNVS-QESLREQIGMVTQ 441
G++I+++ +E R I + Q
Sbjct: 63 GEDITDLPPEERARLGIFLAFQ 84
Score = 43.7 bits (104), Expect = 7e-05
Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 7/96 (7%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAHR- 559
SGG+++R I +++L + +LDE S LD +A + + + L +GK+V+ I H
Sbjct: 105 FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQ 164
Query: 560 --LSTISAMDRLIVLDNGCVAEEG--SHLDLLKKNG 591
L I DR+ VL +G + + G ++K G
Sbjct: 165 RLLDYIKP-DRVHVLYDGRIVKSGDKELALEIEKKG 199
>gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding
protein UrtD. Members of this protein family are ABC
transporter ATP-binding subunits associated with urea
transport and metabolism. This protein is found in a
conserved five-gene transport operon typically found
adjacent to urease genes. It was shown in Cyanobacteria
that disruption leads to the loss of high-affinity urea
transport activity [Transport and binding proteins,
Amino acids, peptides and amines].
Length = 242
Score = 53.7 bits (130), Expect = 6e-08
Identities = 56/231 (24%), Positives = 97/231 (41%), Gaps = 47/231 (20%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI-------KYGEILIDGQNISNVS 428
+N+LSL + PGE ++G +GAGK+T D+ G +L G +++ +
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTT-------MMDVITGKTRPDEGSVLFGGTDLTGLP 70
Query: 429 QESL-REQIGMVTQDTSLL---------------HRSIRDNILYGRPDASECELFNAAKC 472
+ + R IG Q ++ +S+ L+ R A E +
Sbjct: 71 EHQIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVF-ASLFFRLSAEE-----KDRI 124
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
E I L DE R G LS GQ+Q + I +++++ +LLLDE + +
Sbjct: 125 EEVLETIG-LADEADRLA-----GL----LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGM 174
Query: 533 DSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLI-VLDNGCVAEEGS 582
E + L +L +V+ + H + + ++ + VL G V EGS
Sbjct: 175 TDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
>gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 214
Score = 51.8 bits (124), Expect = 2e-07
Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 21/164 (12%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQE---S 431
+ L + GE + + G +GAGK+T+ +L ++ G+I IDG+ + + +
Sbjct: 26 VFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGDRSRFMA 85
Query: 432 LREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGY 491
+ + D S L L+GR A + + + I L
Sbjct: 86 YLGHLPGLKADLSTLENLHFLCGLHGR---------RAKQMPGSALAIVGLAGYE----- 131
Query: 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
D V + LS GQ++R+A+AR+ L AP+ LLDE + LD E
Sbjct: 132 DTLVRQ----LSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
>gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT)
Family protei. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 659
Score = 53.6 bits (129), Expect = 2e-07
Identities = 54/226 (23%), Positives = 99/226 (43%), Gaps = 47/226 (20%)
Query: 353 LVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDI 412
+ + I F+N+ ++I +LS + G + + G +G GKS++ +L + +
Sbjct: 445 VEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPV 504
Query: 413 KYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKC 472
G + + ++ V Q + ++RD I+Y PD+SE
Sbjct: 505 YGGRLTKPAKG-----------KLFYVPQRPYMTLGTLRDQIIY--PDSSE--------- 542
Query: 473 AEADIFIKSLTDEHGRK---------------GYDAHVGEHGIKLSGGQRQRIAIARVIL 517
D+ + L+D+ + G+ A V + LSGG++QRIA+AR+
Sbjct: 543 ---DMKRRGLSDKDLEQILDNVQLTHILEREGGWSA-VQDWMDVLSGGEKQRIAMARLFY 598
Query: 518 KNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLS 561
+LDE TSA+ + E + Y L + G T+ +++HR S
Sbjct: 599 HKPQFAILDECTSAVSVDVEGYM----YRLCREFGITLFSVSHRKS 640
>gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein;
Reviewed.
Length = 556
Score = 53.2 bits (129), Expect = 3e-07
Identities = 35/88 (39%), Positives = 53/88 (60%), Gaps = 17/88 (19%)
Query: 492 DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGK 551
DA V KLSGG+R+R+A+ R++L+ +LLLDE T+ LD+E+ +++ L++ G
Sbjct: 158 DAKVT----KLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDY-PG- 211
Query: 552 TVIAIAHRLSTISAMDRLIVLDNGCVAE 579
TV+A+ H DR LDN VA
Sbjct: 212 TVVAVTH--------DRYF-LDN--VAG 228
Score = 45.9 bits (110), Expect = 5e-05
Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 4/46 (8%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR 408
VS K I+ ++SL+ PG KIG++G +GAGKST LLR
Sbjct: 10 NRVSKVVPPKKQILKDISLSFFPGAKIGVLGLNGAGKST----LLR 51
Score = 42.8 bits (102), Expect = 5e-04
Identities = 18/42 (42%), Positives = 31/42 (73%), Gaps = 1/42 (2%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST 401
I +N+S S+ + L+I++LS ++ PG +G++G +GAGKST
Sbjct: 325 IEAENLSKSFGDR-LLIDDLSFSLPPGGIVGIIGPNGAGKST 365
Score = 37.0 bits (87), Expect = 0.028
Identities = 16/34 (47%), Positives = 24/34 (70%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
LSGG+R R+ +A+ + + +LLLDE T+ LD E
Sbjct: 446 LSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVE 479
>gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding
protein ModF; Provisional.
Length = 490
Score = 53.1 bits (128), Expect = 3e-07
Identities = 60/195 (30%), Positives = 88/195 (45%), Gaps = 43/195 (22%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
I N SY+ + I++NLS + PGE +VG +GAGKST LL LI
Sbjct: 261 IVLNNGVVSYNDRP-ILHNLSWQVNPGEHWQIVGPNGAGKST----LLS---------LI 306
Query: 420 DG---QNISNV---------SQESL---REQIGMVTQDTSLLHR---SIRDNILYGRPDA 461
G Q SN S E++ ++ IG V+ L +R S+R+ IL G D+
Sbjct: 307 TGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDS 366
Query: 462 SECELFNAAKCAEADIFIKSLTDEH-GRKGYDAHVGEHGIK-LSGGQRQRIA-IARVILK 518
++ A + + L + G D + LS GQ QR+A I R ++K
Sbjct: 367 --IGIYQAVSDRQ-----QKLAQQWLDILGIDKRTADAPFHSLSWGQ-QRLALIVRALVK 418
Query: 519 NAPILLLDEATSALD 533
+ +L+LDE LD
Sbjct: 419 HPTLLILDEPLQGLD 433
Score = 40.8 bits (96), Expect = 0.002
Identities = 58/240 (24%), Positives = 102/240 (42%), Gaps = 34/240 (14%)
Query: 369 YDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS 428
D K L + SLT+ G+ VG +G+GKS + L + GE +I+ +S
Sbjct: 14 SDTKTLQLP--SLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLS 71
Query: 429 QESLREQIGMVTQD--TSLLH-------RSIRDNILYGRPDASECELFNAAKCAEADIF- 478
E L++ + Q T +L R+ + I D + CE A F
Sbjct: 72 FEQLQKLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQL-------AQQFG 124
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
I +L D R Y LS G+ ++ + + ++ +L+LDE LD +
Sbjct: 125 ITALLDR--RFKY----------LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQ 172
Query: 539 AIQKSLYNLM-KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596
+ + L +L G T++ + +R I + VL + +AE G ++L++ L ++L
Sbjct: 173 QLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQ-ALVAQL 231
>gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed.
Length = 635
Score = 53.0 bits (128), Expect = 3e-07
Identities = 22/52 (42%), Positives = 34/52 (65%), Gaps = 3/52 (5%)
Query: 358 GKIFF--KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL 407
GKI F +NV++ D K L+ + S +Q G+KI L+G +G GK+T+ L+L
Sbjct: 316 GKIVFEMENVNYQIDGKQLV-KDFSAQVQRGDKIALIGPNGCGKTTLLKLML 366
Score = 47.3 bits (113), Expect = 2e-05
Identities = 23/55 (41%), Positives = 34/55 (61%), Gaps = 10/55 (18%)
Query: 366 SFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420
SFS +++N L I+ E++ LVGR+GAGKST L++ I GE+L+D
Sbjct: 12 SFSD---APLLDNAELHIEDNERVCLVGRNGAGKST----LMK---ILNGEVLLD 56
Score = 42.6 bits (101), Expect = 5e-04
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561
LSGG ++ A+ R ++ N +LLLDE T+ LD E ++ L +G ++I I+H S
Sbjct: 157 LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTF-QG-SIIFISHDRS 214
Query: 562 TISAMDRLIV-LDNG 575
I M IV LD G
Sbjct: 215 FIRNMATRIVDLDRG 229
Score = 41.9 bits (99), Expect = 8e-04
Identities = 18/34 (52%), Positives = 26/34 (76%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
LSGG+R R+ +AR+ LK + +L+LDE T+ LD E
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVE 474
>gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system,
ATPase component [Defense mechanisms].
Length = 330
Score = 51.0 bits (122), Expect = 9e-07
Identities = 65/249 (26%), Positives = 100/249 (40%), Gaps = 59/249 (23%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLL--------------LRFYDIKYGEIL-- 418
++ +S+T+ GE GLVG SG+GKS I + +RF DI ++L
Sbjct: 22 AVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDI---DLLRL 78
Query: 419 -------IDGQNISNVSQESL-----REQIGMVTQDTSLLHRSIRDNILYGRPDASECEL 466
+ G N+S + QE E++G R + NI +
Sbjct: 79 SPRERRKLVGHNVSMIFQEPQSCLDPSERVG----------RQLIQNIPAWTYKGRWWQR 128
Query: 467 FNAAKCAEADIF----IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI 522
F K ++ IK D Y+ GE Q+ IAIA L N P
Sbjct: 129 FGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGE-------CQKVMIAIA---LANQPR 178
Query: 523 LLL-DEATSALDSEAEIAIQKSL--YNLMKGKTVIAIAHRLSTISA-MDRLIVLDNGCVA 578
LL+ DE T++++ + I + L N T++ I+H L IS D++ VL G
Sbjct: 179 LLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTV 238
Query: 579 EEGSHLDLL 587
E +L+
Sbjct: 239 ESAPSEELV 247
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only detects
a fraction of this vast family. The poorly conserved
N-terminal helix is missing from the alignment.
Length = 148
Score = 48.1 bits (114), Expect = 1e-06
Identities = 38/197 (19%), Positives = 58/197 (29%), Gaps = 64/197 (32%)
Query: 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTS 444
PGE I +VG G+GK+T+ +++E G++ D
Sbjct: 1 PGEVILIVGPPGSGKTTL---------------------ARALARELGPPGGGVIYIDGE 39
Query: 445 LLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504
+ + D +L VG SG
Sbjct: 40 DILEEVLDQLLLII------------------------------------VGGKKASGSG 63
Query: 505 GQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSL-------YNLMKGKTVIAIA 557
R R+A+A +L+LDE TS LD+E E + K TVI
Sbjct: 64 ELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTT 123
Query: 558 HRLSTISAMDRLIVLDN 574
+ + D
Sbjct: 124 NDEKDLGPALLRRRFDR 140
>gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA;
Provisional.
Length = 195
Score = 47.6 bits (113), Expect = 4e-06
Identities = 48/192 (25%), Positives = 84/192 (43%), Gaps = 26/192 (13%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+ F+ +QK+L +LS+T P + G +G GKS++ ++ G I
Sbjct: 4 LHQLQFNIEQKNLF--DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKN 61
Query: 422 QNISNVSQESLREQIGMVTQDTSL-LHRSIRDNILYGRPDASECELFNAAKCAEADIFIK 480
NI+N+++ + + L L ++ +N+ + E++N+A+ A I
Sbjct: 62 CNINNIAKPYC----TYIGHNLGLKLEMTVFENLKFW------SEIYNSAETLYAAIHYF 111
Query: 481 SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAI 540
L D K Y LS G ++ +AIAR+I + + LLDE + L E
Sbjct: 112 KLHDLLDEKCY---------SLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKEN---- 158
Query: 541 QKSLYNLMKGKT 552
+ L NL+ K
Sbjct: 159 RDLLNNLIVMKA 170
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 48.7 bits (116), Expect = 8e-06
Identities = 31/88 (35%), Positives = 50/88 (56%), Gaps = 4/88 (4%)
Query: 492 DAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-K 549
DA VG G+ LS QR+R+ IA ++ N I+ +DE TS LD+ A + +++ N +
Sbjct: 1009 DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDT 1068
Query: 550 GKTVIAIAHRLS--TISAMDRLIVLDNG 575
G+TV+ H+ S A D L+++ G
Sbjct: 1069 GRTVVCTIHQPSIDIFEAFDELLLMKRG 1096
Score = 33.7 bits (77), Expect = 0.33
Identities = 19/54 (35%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
Query: 492 DAHVGEHGIK-LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSL 544
D VG+ I+ +SGGQ++R+ +I+ L +DE ++ LDS I K L
Sbjct: 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCL 379
>gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase
component [Inorganic ion transport and metabolism].
Length = 235
Score = 47.0 bits (112), Expect = 1e-05
Identities = 18/32 (56%), Positives = 26/32 (81%)
Query: 503 SGGQRQRIAIARVILKNAPILLLDEATSALDS 534
SGG++QR+ IAR + + PILLLDE T++LD+
Sbjct: 154 SGGEQQRVNIARGFIVDYPILLLDEPTASLDA 185
Score = 41.3 bits (97), Expect = 8e-04
Identities = 26/75 (34%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI--DGQNISNVSQE-- 430
++ N+SL++ GE + L G SG+GKST+ L Y G+IL+ +G+ + V+ E
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 431 ---SLREQ-IGMVTQ 441
+R IG V+Q
Sbjct: 86 EVLEVRRTTIGYVSQ 100
>gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK;
Provisional.
Length = 258
Score = 46.5 bits (111), Expect = 2e-05
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 11/86 (12%)
Query: 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKT------VIAI 556
SGG +QR+ IAR ++ + ++ +DE T LD +++Q L +L++G V+ +
Sbjct: 153 SGGMQQRLQIARNLVTHPRLVFMDEPTGGLD----VSVQARLLDLLRGLVRELGLAVVIV 208
Query: 557 AHRLSTISAM-DRLIVLDNGCVAEEG 581
H L+ + RL+V+ G V E G
Sbjct: 209 THDLAVARLLAHRLLVMKQGRVVESG 234
Score = 39.1 bits (92), Expect = 0.004
Identities = 14/29 (48%), Positives = 22/29 (75%)
Query: 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLL 406
++S + PGE +G+VG SG+GK+T+ N L
Sbjct: 24 DVSFDLYPGEVLGIVGESGSGKTTLLNAL 52
>gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein
YrbF; Provisional.
Length = 269
Score = 46.3 bits (110), Expect = 2e-05
Identities = 52/175 (29%), Positives = 87/175 (49%), Gaps = 26/175 (14%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+ VSF+ + I +N+SLT+ G+ ++G SG GK+T+ L+ +GEIL DG+
Sbjct: 11 RGVSFTRGNR-CIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 69
Query: 423 NISNVSQESL---REQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIF 478
NI +S+ L R+++ M+ Q +L ++ DN+ Y P +L A + +
Sbjct: 70 NIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY--PLREHTQL--PAPLLHSTVM 125
Query: 479 IKSLTDEHGRKGYDAHVGEHGI------KLSGGQRQRIAIARVILKNAPILLLDE 527
+K +A VG G +LSGG +R A+AR I +++ DE
Sbjct: 126 MK----------LEA-VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDE 169
>gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region.
This family represents a unit of six transmembrane
helices. Many members of the ABC transporter family
(pfam00005) have two such regions.
Length = 274
Score = 46.5 bits (111), Expect = 2e-05
Identities = 48/272 (17%), Positives = 88/272 (32%), Gaps = 16/272 (5%)
Query: 39 ILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVG 98
+L+ I L G + +G+ +D L + S ILL+ ++ + G
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 99 LQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEF----AGRIATKVMQTSIAIRDI 154
L + +R R +L Q + F G + +++ IRD
Sbjct: 61 SFYLGERLG------QRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDG 114
Query: 155 FVIIGDILVFITIYIVTILTIIG---TFNVYMLFPFVIWISAYIYTLIYFIPRLNKTAES 211
+GD L + T++ + + + + I +L K
Sbjct: 115 ---LGDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRK 171
Query: 212 QATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIIN 271
+ A + ++ + I TVK F E A+ D K ++ I
Sbjct: 172 EQKAYAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGIT 231
Query: 272 HLLAMLLILGTTGCALFLWTKGILGIGAVAAA 303
L++ L +L G L +G V A
Sbjct: 232 QLISYLSYALALWFGAYLVISGGLSVGTVFAF 263
>gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter
ATP-binding protein; Provisional.
Length = 330
Score = 45.9 bits (109), Expect = 4e-05
Identities = 63/241 (26%), Positives = 104/241 (43%), Gaps = 45/241 (18%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLL--------------LRFYDIKYGEIL--- 418
++ +S+T+ GE GLVG SG+GKS I + +RF DI +
Sbjct: 23 VDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRE 82
Query: 419 ---IDGQNISNVSQESLR-----EQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAA 470
+ G N+S + QE E++G Q L ++I GR + F
Sbjct: 83 RRKLVGHNVSMIFQEPQSCLDPSERVG--RQ----LMQNIPGWTYKGR----WWQRFGWR 132
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL-DEAT 529
K + L G K + + +L+ G+ Q++ IA + L N P LL+ DE T
Sbjct: 133 KRRAIE-----LLHRVGIKDHKDAMRSFPYELTEGECQKVMIA-IALANQPRLLIADEPT 186
Query: 530 SALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDL 586
+A++ + I + L L + T++ I+H L +S D++ VL G E +L
Sbjct: 187 NAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETAPSKEL 246
Query: 587 L 587
+
Sbjct: 247 V 247
>gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette
domain 1 of RNase L inhibitor. The ABC ATPase, RNase L
inhibitor (RLI), is a key enzyme in ribosomal
biogenesis, formation of translation preinitiation
complexes, and assembly of HIV capsids. RLI s are not
transport proteins and thus cluster with a group of
soluble proteins that lack the transmembrane components
commonly found in other members of the family.
Structurally, RLIs have an N-terminal Fe-S domain and
two nucleotide binding domains which are arranged to
form two composite active sites in their interface
cleft. RLI is one of the most conserved enzymes between
archaea and eukaryotes with a sequence identity more
than 48%. The high degree of evolutionary conservation
suggests that RLI performs a central role in archaeal
and eukaryotic physiology.
Length = 255
Score = 44.7 bits (106), Expect = 6e-05
Identities = 51/196 (26%), Positives = 84/196 (42%), Gaps = 37/196 (18%)
Query: 384 QPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS--------QESLREQ 435
+ G+ +GLVG +G GKST +L G+ N+ E L E
Sbjct: 24 REGQVLGLVGPNGIGKSTALKIL-------------AGKLKPNLGKFDDPPDWDEILDEF 70
Query: 436 IGMVTQD--TSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGY-- 491
G Q+ T LL ++ + +P + + A K ++ K DE G+
Sbjct: 71 RGSELQNYFTKLLEGDVKVIV---KPQYVD-LIPKAVKGKVGELLKK--KDERGKLDELV 124
Query: 492 DA----HVGEHGI-KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYN 546
D HV + I +LSGG+ QR+AIA + ++A DE +S LD + + + +
Sbjct: 125 DQLELRHVLDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRE 184
Query: 547 LMK-GKTVIAIAHRLS 561
L + V+ + H L+
Sbjct: 185 LAEDDNYVLVVEHDLA 200
>gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein;
Provisional.
Length = 530
Score = 44.5 bits (106), Expect = 1e-04
Identities = 15/55 (27%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
+N++ +D L NL+L ++ GE++ ++G +G GK+T+ L+ + G +
Sbjct: 323 ENLTKGFDNGPLF-KNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTV 376
Score = 35.6 bits (83), Expect = 0.072
Identities = 55/194 (28%), Positives = 79/194 (40%), Gaps = 63/194 (32%)
Query: 378 NLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIG 437
N+S+ G + GL+G +G GKST F I G++ + NVS + E++G
Sbjct: 19 NISVKFGGGNRYGLIGANGCGKST-------FMKILGGDL---EPSAGNVSLDP-NERLG 67
Query: 438 MVTQDT------SLL------HRSI------RDNILYGRPDASECELFNAA----KCAEA 475
+ QD ++L H + RD I Y P+ SE + A K AE
Sbjct: 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRI-YALPEMSEEDGMKVADLEVKFAEM 126
Query: 476 DIFIKSLTDEHGRKGYDAH--VGE----HGIKL----------SGGQRQRIAIARVILKN 519
D GY A GE GI + G + R+ +A+ + N
Sbjct: 127 D-------------GYTAEARAGELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSN 173
Query: 520 APILLLDEATSALD 533
ILLLDE T+ LD
Sbjct: 174 PDILLLDEPTNNLD 187
Score = 35.6 bits (83), Expect = 0.073
Identities = 24/93 (25%), Positives = 56/93 (60%), Gaps = 4/93 (4%)
Query: 502 LSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561
LSGG++ R+ +++++ +L++DE T+ +D E+ ++ +L +G T+I ++H
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY-EG-TLIFVSHDRE 496
Query: 562 TISAM-DRLI-VLDNGCVAEEGSHLDLLKKNGL 592
+S++ R+I + +G V G++ + L+ G+
Sbjct: 497 FVSSLATRIIEITPDGVVDFSGTYEEYLRSQGI 529
>gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit;
Provisional.
Length = 549
Score = 43.7 bits (103), Expect = 3e-04
Identities = 24/69 (34%), Positives = 43/69 (62%), Gaps = 8/69 (11%)
Query: 338 LSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGA 397
++KKYK+ YN + + +FF++ Y H +NN+S + GE +G++G +G+
Sbjct: 10 VTKKYKM---YNKPFDKLKD--LFFRSKDGEY---HYALNNISFEVPEGEIVGIIGLNGS 61
Query: 398 GKSTINNLL 406
GKST++NL+
Sbjct: 62 GKSTLSNLI 70
>gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication,
recombination, and repair].
Length = 935
Score = 43.0 bits (102), Expect = 4e-04
Identities = 26/73 (35%), Positives = 41/73 (56%), Gaps = 4/73 (5%)
Query: 502 LSGGQRQRIAIARVILKNAP---ILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIA 557
LSGG+ QR+ +A+ + K + + +LDE T+ L + + + L+ L+ KG TVI I
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 558 HRLSTISAMDRLI 570
H L I D +I
Sbjct: 883 HNLDVIKTADWII 895
Score = 41.0 bits (97), Expect = 0.002
Identities = 30/74 (40%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 502 LSGGQRQRIAIARVILKNAPILL--LDEATSAL---DSEAEIAIQKSLYNLMKGKTVIAI 556
LSGG+ QRI +A I +L LDE + L D+E I K L +L G TVI +
Sbjct: 482 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDL--GNTVIVV 539
Query: 557 AHRLSTISAMDRLI 570
H TI A D +I
Sbjct: 540 EHDEDTIRAADHII 553
>gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed.
Length = 248
Score = 41.7 bits (98), Expect = 6e-04
Identities = 57/237 (24%), Positives = 106/237 (44%), Gaps = 27/237 (11%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL--RFYDIKYGEILID 420
K++ S + K I+ L+L ++PGE ++G +G+GKST++ L Y++ G +
Sbjct: 5 KDLHVSVEDKA-ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 63
Query: 421 GQNISNVS-QESLREQIGMVTQ---------DTSLLHRSIRDNILYGRPDASECELFNAA 470
G+++ +S ++ E I M Q + L ++ N + + F+
Sbjct: 64 GKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTAL--NAVRSYRGQEPLDRFDFQ 121
Query: 471 KCAEADI-FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEAT 529
E I +K D R +VG SGG+++R I ++ + + +LDE+
Sbjct: 122 DLMEEKIALLKMPEDLLTRS---VNVG-----FSGGEKKRNDILQMAVLEPELCILDESD 173
Query: 530 SALDSEAEIAIQKSLYNLMKGK-TVIAIAH--RLSTISAMDRLIVLDNGCVAEEGSH 583
S LD +A + + +L GK + I + H R+ D + VL G + + G
Sbjct: 174 SGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 230
>gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 176
Score = 40.8 bits (96), Expect = 6e-04
Identities = 23/72 (31%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Query: 502 LSGGQRQRIAIARVILKNAP--ILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAH 558
LSGG+ QR+ +A + P + +LDE ++ L + + + + L+ G TVI I H
Sbjct: 88 LSGGELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEH 147
Query: 559 RLSTISAMDRLI 570
L +S+ D +I
Sbjct: 148 NLDVLSSADWII 159
>gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the
excision repair protein UvrA. Nucleotide excision
repair in eubacteria is a process that repairs DNA
damage by the removal of a 12-13-mer oligonucleotide
containing the lesion. Recognition and cleavage of the
damaged DNA is a multistep ATP-dependent reaction that
requires the UvrA, UvrB, and UvrC proteins. Both UvrA
and UvrB are ATPases, with UvrA having two ATP binding
sites, which have the characteristic signature of the
family of ABC proteins and UvrB having one ATP binding
site that is structurally related to that of helicases.
Length = 261
Score = 41.4 bits (98), Expect = 7e-04
Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 8/77 (10%)
Query: 502 LSGGQRQRIAIARVILKNAP---ILLLDEATSAL---DSEAEIAIQKSLYNLMKGKTVIA 555
LSGG+ QRI +A+ + K + + +LDE T+ L D + + + + L + KG TV+
Sbjct: 170 LSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRL--VDKGNTVVV 227
Query: 556 IAHRLSTISAMDRLIVL 572
I H L I D +I L
Sbjct: 228 IEHNLDVIKCADWIIDL 244
>gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter
proteins. ABC-type Class 2 contains systems involved in
cellular processes other than transport. These families
are characterized by the fact that the ABC subunit is
made up of duplicated, fused ABC modules (ABC2). No
known transmembrane proteins or domains are associated
with these proteins.
Length = 162
Score = 40.0 bits (94), Expect = 0.001
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 5/76 (6%)
Query: 500 IKLSGGQRQRIAIARVI----LKNAPILLLDEATSALDS-EAEIAIQKSLYNLMKGKTVI 554
++LSGG+++ A+A ++ LK P+ +LDE LD + + + L +L+KG VI
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 555 AIAHRLSTISAMDRLI 570
I H D+LI
Sbjct: 136 VITHLPELAELADKLI 151
>gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit. This family is a
member of the ABC transporter superfamily of proteins of
which all members for which functions are known except
the UvrA proteins are involved in the transport of
material through membranes. UvrA orthologs are involved
in the recognition of DNA damage as a step in nucleotide
excision repair. This family is based on the
phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis,
Stanford University) [DNA metabolism, DNA replication,
recombination, and repair].
Length = 925
Score = 41.5 bits (98), Expect = 0.001
Identities = 32/101 (31%), Positives = 46/101 (45%), Gaps = 15/101 (14%)
Query: 502 LSGGQRQRIAIARVI---LKNAPILLLDEATSAL---DSEAEIAIQKSLYNLMKGKTVIA 555
LSGG+ QRI +A I L + +LDE + L D+ I K L +L G T+I
Sbjct: 489 LSGGEAQRIRLATQIGSGLTGV-LYVLDEPSIGLHQRDNRRLINTLKRLRDL--GNTLIV 545
Query: 556 IAHRLSTISAMDRLIVL------DNGCVAEEGSHLDLLKKN 590
+ H TI A D +I + G V G+ ++L
Sbjct: 546 VEHDEDTIRAADYVIDIGPGAGEHGGEVVASGTPEEILANP 586
Score = 40.4 bits (95), Expect = 0.003
Identities = 29/78 (37%), Positives = 41/78 (52%), Gaps = 10/78 (12%)
Query: 502 LSGGQRQRIAIARVILKNA---PILLLDEATSALDSEAEIAIQKSLYNLM----KGKTVI 554
LSGG+ QRI +A+ + K + + +LDE T+ L + I+K L L KG TV+
Sbjct: 830 LSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFD---DIKKLLEVLQRLVDKGNTVV 886
Query: 555 AIAHRLSTISAMDRLIVL 572
I H L I D +I L
Sbjct: 887 VIEHNLDVIKTADYIIDL 904
>gnl|CDD|213245 cd03278, ABC_SMC_barmotin, ATP-binding cassette domain of barmotin,
a member of the SMC protein family. Barmotin is a tight
junction-associated protein expressed in rat epithelial
cells which is thought to have an important regulatory
role in tight junction barrier function. Barmotin
belongs to the SMC protein family. SMC proteins are
large (approximately 110 to 170 kDa), and each is
arranged into five recognizable domains. Amino-acid
sequence homology of SMC proteins between species is
largely confined to the amino- and carboxy-terminal
globular domains. The amino-terminal domain contains a
'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the
single-letter amino-acid code), which by mutational
studies has been shown to be essential in several
proteins. The carboxy-terminal domain contains a
sequence (the DA-box) that resembles a 'Walker B' motif,
and a motif with homology to the signature sequence of
the ATP-binding cassette (ABC) family of ATPases. The
sequence homology within the carboxy-terminal domain is
relatively high within the SMC1-SMC4 group, whereas SMC5
and SMC6 show some divergence in both of these
sequences. In eukaryotic cells, the proteins are found
as heterodimers of SMC1 paired with SMC3, SMC2 with
SMC4, and SMC5 with SMC6 (formerly known as Rad18).
Length = 197
Score = 40.1 bits (95), Expect = 0.001
Identities = 25/74 (33%), Positives = 38/74 (51%), Gaps = 6/74 (8%)
Query: 502 LSGGQRQRIAIARV----ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKT-VIAI 556
LSGG++ A+A + ++ +P +LDE +ALD +A + L +T I I
Sbjct: 114 LSGGEKALTALALLFAIFRVRPSPFCVLDEVDAALD-DANVERFARLLKEFSKETQFIVI 172
Query: 557 AHRLSTISAMDRLI 570
HR T+ A DRL
Sbjct: 173 THRKGTMEAADRLY 186
>gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated.
Length = 252
Score = 39.6 bits (93), Expect = 0.002
Identities = 22/66 (33%), Positives = 40/66 (60%), Gaps = 3/66 (4%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF--YDIKYGEILIDGQNISNVSQESL 432
I+ L+L+I GE ++G +G+GKST++ ++ Y I G+IL G++I ++ E
Sbjct: 22 ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE-E 80
Query: 433 REQIGM 438
R +G+
Sbjct: 81 RAHLGI 86
Score = 36.5 bits (85), Expect = 0.022
Identities = 30/95 (31%), Positives = 50/95 (52%), Gaps = 7/95 (7%)
Query: 503 SGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVIAIAH--R 559
SGG+++R I ++ L ++ + +LDE S LD +A I + + LM ++I I H R
Sbjct: 153 SGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQR 212
Query: 560 LSTISAMDRLIVLDNGCVAEEGSHLDL---LKKNG 591
L D + V+ NG + + G +L L+K G
Sbjct: 213 LLDYIKPDYVHVMQNGKIIKTGD-AELAKELEKKG 246
>gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision
repair protein UvrA. Nucleotide excision repair in
eubacteria is a process that repairs DNA damage by the
removal of a 12-13-mer oligonucleotide containing the
lesion. Recognition and cleavage of the damaged DNA is a
multistep ATP-dependent reaction that requires the UvrA,
UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases,
with UvrA having two ATP binding sites, which have the
characteristic signature of the family of ABC proteins,
and UvrB having one ATP binding site that is
structurally related to that of helicases.
Length = 226
Score = 39.5 bits (93), Expect = 0.003
Identities = 27/74 (36%), Positives = 38/74 (51%), Gaps = 7/74 (9%)
Query: 502 LSGGQRQRIAIARVILKN--APILLLDEATSAL---DSEAEIAIQKSLYNLMKGKTVIAI 556
LSGG+ QRI +A I + +LDE + L D++ I K L +L G TV+ +
Sbjct: 138 LSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDL--GNTVLVV 195
Query: 557 AHRLSTISAMDRLI 570
H TI A D +I
Sbjct: 196 EHDEDTIRAADHVI 209
>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common
bacterial type. SMC (structural maintenance of
chromosomes) proteins bind DNA and act in organizing and
segregating chromosomes for partition. SMC proteins are
found in bacteria, archaea, and eukaryotes. This family
represents the SMC protein of most bacteria. The smc gene
is often associated with scpB (TIGR00281) and scpA genes,
where scp stands for segregation and condensation
protein. SMC was shown (in Caulobacter crescentus) to be
induced early in S phase but present and bound to DNA
throughout the cell cycle [Cellular processes, Cell
division, DNA metabolism, Chromosome-associated
proteins].
Length = 1179
Score = 40.4 bits (95), Expect = 0.003
Identities = 23/74 (31%), Positives = 35/74 (47%), Gaps = 6/74 (8%)
Query: 502 LSGGQRQRIAIARVI----LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKT-VIAI 556
LSGG++ A+A + +K AP +LDE + LD +A + +L T I I
Sbjct: 1090 LSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLD-DANVERFANLLKEFSKNTQFIVI 1148
Query: 557 AHRLSTISAMDRLI 570
H T+ D+L
Sbjct: 1149 THNKGTMEVADQLY 1162
>gnl|CDD|234988 PRK01889, PRK01889, GTPase RsgA; Reviewed.
Length = 356
Score = 39.1 bits (92), Expect = 0.005
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 383 IQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
+ G+ + L+G SG GKST+ N LL K G +
Sbjct: 192 LSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAV 226
>gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding
subunit; Provisional.
Length = 264
Score = 39.0 bits (91), Expect = 0.005
Identities = 22/74 (29%), Positives = 42/74 (56%), Gaps = 12/74 (16%)
Query: 335 MNMLSKKYKIVDNYNAKRL--VVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLV 392
+ ++K+Y+I N +R+ + KN +F ++++SL G+ IGLV
Sbjct: 7 IKNVTKEYRIYRT-NKERMKDALIPKH---KNKTF------FALDDISLKAYEGDVIGLV 56
Query: 393 GRSGAGKSTINNLL 406
G +G+GKST++N++
Sbjct: 57 GINGSGKSTLSNII 70
>gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50. The
catalytic domains of Rad50 are similar to the
ATP-binding cassette of ABC transporters, but are not
associated with membrane-spanning domains. The conserved
ATP-binding motifs common to Rad50 and the ABC
transporter family include the Walker A and Walker B
motifs, the Q loop, a histidine residue in the switch
region, a D-loop, and a conserved LSGG sequence. This
conserved sequence, LSGG, is the most specific and
characteristic motif of this family and is thus known as
the ABC signature sequence.
Length = 204
Score = 37.6 bits (88), Expect = 0.009
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 9/54 (16%)
Query: 502 LSGGQRQ------RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK 549
SGG++ R+A+A N IL LDE T+ LD E I++SL +++
Sbjct: 116 CSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEE---NIEESLAEIIE 166
>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and
chromosome partitioning].
Length = 1163
Score = 38.2 bits (89), Expect = 0.014
Identities = 24/73 (32%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 502 LSGGQRQRIAIARVI----LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIA 557
LSGG++ A+A + + AP +LDE +ALD + + + + K I I
Sbjct: 1067 LSGGEKSLTALALLFAIQKYRPAPFYVLDEVDAALDDANVERVARLIKEMSKETQFIVIT 1126
Query: 558 HRLSTISAMDRLI 570
HR T+ A DRL+
Sbjct: 1127 HRKGTMEAADRLV 1139
>gnl|CDD|217051 pfam02463, SMC_N, RecF/RecN/SMC N terminal domain. This domain is
found at the N terminus of SMC proteins. The SMC
(structural maintenance of chromosomes) superfamily
proteins have ATP-binding domains at the N- and
C-termini, and two extended coiled-coil domains separated
by a hinge in the middle. The eukaryotic SMC proteins
form two kind of heterodimers: the SMC1/SMC3 and the
SMC2/SMC4 types. These heterodimers constitute an
essential part of higher order complexes, which are
involved in chromatin and DNA dynamics. This family also
includes the RecF and RecN proteins that are involved in
DNA metabolism and recombination.
Length = 1162
Score = 38.0 bits (88), Expect = 0.015
Identities = 26/73 (35%), Positives = 37/73 (50%), Gaps = 4/73 (5%)
Query: 502 LSGGQRQRIAIARV--ILKN--APILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIA 557
LSGG++ +A+A + I K AP LLDE +ALD + + L L K I I+
Sbjct: 1079 LSGGEKTLVALALIFAIQKYRPAPFYLLDEIDAALDDQNVSRVANYLKELSKNAQFIVIS 1138
Query: 558 HRLSTISAMDRLI 570
R + DRL+
Sbjct: 1139 LREEMLEKADRLV 1151
>gnl|CDD|223603 COG0529, CysC, Adenylylsulfate kinase and related kinases
[Inorganic ion transport and metabolism].
Length = 197
Score = 35.7 bits (83), Expect = 0.038
Identities = 19/45 (42%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
Query: 381 LTIQPGEKIGLVGRSGAGKSTINNLL-LRFYDIKYGEILIDGQNI 424
L Q G I G SG+GKSTI N L + + Y L+DG N+
Sbjct: 18 LKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62
>gnl|CDD|100796 PRK01156, PRK01156, chromosome segregation protein; Provisional.
Length = 895
Score = 36.4 bits (84), Expect = 0.052
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 12/77 (15%)
Query: 502 LSGGQRQ------RIAIARVILKNAPILLLDEATSALDSE-----AEIAIQKSLYNLMKG 550
LSGG++ R+A+A+ + + +L++DE T+ LD + +I I+ SL +
Sbjct: 802 LSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDI-IEYSLKDSSDI 860
Query: 551 KTVIAIAHRLSTISAMD 567
VI I+H +S D
Sbjct: 861 PQVIMISHHRELLSVAD 877
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). This protein,
adenylylsulfate kinase, is often found as a fusion
protein with sulfate adenylyltransferase. Important
residue (active site in E.coli) is residue 100 of the
seed alignment [Central intermediary metabolism, Sulfur
metabolism].
Length = 184
Score = 34.0 bits (78), Expect = 0.12
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 384 QPGEKIGLVGRSGAGKSTINNLLLR-FYDIKYGEILIDGQNI 424
G I L G SG+GKSTI N L + Y ++DG N+
Sbjct: 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNV 57
>gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 908
Score = 35.1 bits (81), Expect = 0.12
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 9/66 (13%)
Query: 502 LSGGQRQ------RIAIARVILKNAPI--LLLDEATSALDSEA-EIAIQKSLYNLMKGKT 552
LSGG+R R+A++ ++ A + L LDE LD E E + L G+
Sbjct: 816 LSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQ 875
Query: 553 VIAIAH 558
+I I+H
Sbjct: 876 IIIISH 881
>gnl|CDD|217416 pfam03193, DUF258, Protein of unknown function, DUF258.
Length = 161
Score = 33.3 bits (77), Expect = 0.18
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYGEI 417
L G+SG GKST+ N LL D++ GEI
Sbjct: 40 LAGQSGVGKSTLLNALLPELDLRTGEI 66
>gnl|CDD|216586 pfam01583, APS_kinase, Adenylylsulphate kinase. Enzyme that
catalyzes the phosphorylation of adenylylsulphate to
3'-phosphoadenylylsulfate. This domain contains an ATP
binding P-loop motif.
Length = 157
Score = 33.0 bits (76), Expect = 0.19
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 389 IGLVGRSGAGKSTINNLLLR-FYDIKYGEILIDGQNI 424
I G SG+GKSTI N L R + ++DG N+
Sbjct: 5 IWFTGLSGSGKSTIANALERKLFAQGISVYVLDGDNV 41
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 31.9 bits (72), Expect = 0.29
Identities = 9/27 (33%), Positives = 12/27 (44%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKY 414
I + G G+GKST+ L I
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKLGIPV 27
>gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN. RecN
ATPase involved in DNA repair; similar to ABC
(ATP-binding cassette) transporter nucleotide-binding
domain; ABC transporters are a large family of proteins
involved in the transport of a wide variety of different
compounds including sugars, ions, peptides, and more
complex organic molecules. The nucleotide binding domain
shows the highest similarity between all members of the
family. ABC transporters are a subset of nucleotide
hydrolases that contain a signature motif, Q-loop, and
H-loop/switch region, in addition to, the Walker A
motif/P-loop and Walker B motif commonly found in a
number of ATP- and GTP-binding and hydrolyzing proteins.
Length = 276
Score = 33.3 bits (77), Expect = 0.30
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 5/69 (7%)
Query: 502 LSGGQRQRIAIA-RVIL---KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIA 557
SGG+ R+ +A + IL P L+ DE + + E A+ K L L + V+ I
Sbjct: 171 ASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCIT 230
Query: 558 HRLSTISAM 566
H L ++AM
Sbjct: 231 H-LPQVAAM 238
>gnl|CDD|213240 cd03273, ABC_SMC2_euk, ATP-binding cassette domain of eukaryotic
SMC2 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 251
Score = 33.0 bits (76), Expect = 0.33
Identities = 18/37 (48%), Positives = 25/37 (67%), Gaps = 6/37 (16%)
Query: 502 LSGGQRQRIAIARVIL-----KNAPILLLDEATSALD 533
LSGGQR +A++ +IL K AP+ +LDE +ALD
Sbjct: 167 LSGGQRSLVALS-LILALLLFKPAPMYILDEVDAALD 202
>gnl|CDD|226124 COG3596, COG3596, Predicted GTPase [General function prediction
only].
Length = 296
Score = 33.2 bits (76), Expect = 0.35
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 1/37 (2%)
Query: 371 QKHLIINNLSLTIQPGEKIGLVGRSGAGKS-TINNLL 406
+ + L LT + + L+G +GAGKS IN L
Sbjct: 24 RILEQLRMLQLTEKEPVNVLLMGATGAGKSSLINALF 60
>gnl|CDD|180911 PRK07261, PRK07261, topology modulation protein; Provisional.
Length = 171
Score = 32.4 bits (74), Expect = 0.36
Identities = 15/49 (30%), Positives = 25/49 (51%), Gaps = 4/49 (8%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEIL-IDGQNISNVSQESLREQ 435
KI ++G SG+GKST+ L + Y+ +L +D + QE +
Sbjct: 2 KIAIIGYSGSGKSTLARKLSQHYNC---PVLHLDTLHFQPNWQERDDDD 47
>gnl|CDD|180120 PRK05506, PRK05506, bifunctional sulfate adenylyltransferase
subunit 1/adenylylsulfate kinase protein; Provisional.
Length = 632
Score = 33.4 bits (77), Expect = 0.41
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Query: 391 LVGRSGAGKSTINNLL-LRFYDIKYGEILIDGQNI 424
G SG+GKSTI NL+ R + + L+DG N+
Sbjct: 465 FTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNV 499
>gnl|CDD|112384 pfam03563, Bunya_G2, Bunyavirus glycoprotein G2. Bunyavirus has
three genomic segments: small (S), middle-sized (M), and
large (L). The S segment encodes the nucleocapsid and a
non-structural protein. The M segment codes for two
glycoproteins, G1 and G2, and another non-structural
protein (NSm). The L segment codes for an RNA
polymerase. This family contains the G2 glycoprotein
which interacts with the pfam03557 G1 glycoprotein.
Length = 286
Score = 32.8 bits (75), Expect = 0.42
Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 4/65 (6%)
Query: 136 FAGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYI 195
F I M SI ++I +II IL I + ILT T+ Y+L P + + AY+
Sbjct: 171 FKRSILPGSMIESIC-QNIELIILTILTLIIFIFLIILT--KTYICYLLIP-IFYPIAYL 226
Query: 196 YTLIY 200
Y +Y
Sbjct: 227 YGWLY 231
>gnl|CDD|216791 pfam01926, MMR_HSR1, 50S ribosome-binding GTPase. The full-length
GTPase protein is required for the complete activity of
the protein of interacting with the 50S ribosome and
binding of both adenine and guanine nucleotides, with a
preference for guanine nucleotide.
Length = 117
Score = 31.1 bits (71), Expect = 0.58
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 388 KIGLVGRSGAGKST-INNLL 406
++ LVGR GKST IN L
Sbjct: 1 RVALVGRPNVGKSTLINALT 20
>gnl|CDD|214504 smart00072, GuKc, Guanylate kinase homologues. Active enzymes
catalyze ATP-dependent phosphorylation of GMP to GDP.
Structure resembles that of adenylate kinase. So-called
membrane-associated guanylate kinase homologues (MAGUKs)
do not possess guanylate kinase activities; instead at
least some possess protein-binding functions.
Length = 174
Score = 31.5 bits (72), Expect = 0.65
Identities = 15/74 (20%), Positives = 24/74 (32%), Gaps = 15/74 (20%)
Query: 395 SGAGKSTINNLLLRFYDIKYG-----------EILIDGQNISNVSQESLREQIGMVTQDT 443
SG GK T+ L++ + ++G + VS+E + I
Sbjct: 1 SGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGEVNGVDYHFVSKEEFEDDIK---SGL 57
Query: 444 SLLHRSIRDNILYG 457
L N YG
Sbjct: 58 FLEWGEYEGN-YYG 70
>gnl|CDD|213239 cd03272, ABC_SMC3_euk, ATP-binding cassette domain of eukaryotic
SMC3 proteins. The structural maintenance of
chromosomes (SMC) proteins are large (approximately 110
to 170 kDa), and each is arranged into five recognizable
domains. Amino-acid sequence homology of SMC proteins
between species is largely confined to the amino- and
carboxy-terminal globular domains. The amino-terminal
domain contains a 'Walker A' nucleotide-binding domain
(GxxGxGKS/T, in the single-letter amino-acid code),
which by mutational studies has been shown to be
essential in several proteins. The carboxy-terminal
domain contains a sequence (the DA-box) that resembles a
'Walker B' motif, and a motif with homology to the
signature sequence of the ATP-binding cassette (ABC)
family of ATPases. The sequence homology within the
carboxy-terminal domain is relatively high within the
SMC1-SMC4 group, whereas SMC5 and SMC6 show some
divergence in both of these sequences. In eukaryotic
cells, the proteins are found as heterodimers of SMC1
paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6
(formerly known as Rad18).
Length = 243
Score = 31.8 bits (73), Expect = 0.76
Identities = 22/62 (35%), Positives = 31/62 (50%), Gaps = 4/62 (6%)
Query: 502 LSGGQRQRIAIARV--ILK--NAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIA 557
LSGGQ+ +A+A + I K AP L DE +ALD++ A+ + L G I
Sbjct: 159 LSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTT 218
Query: 558 HR 559
R
Sbjct: 219 FR 220
>gnl|CDD|234631 PRK00098, PRK00098, GTPase RsgA; Reviewed.
Length = 298
Score = 32.1 bits (74), Expect = 0.83
Identities = 14/27 (51%), Positives = 18/27 (66%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYGEI 417
L G+SG GKST+ N L ++K GEI
Sbjct: 169 LAGQSGVGKSTLLNALAPDLELKTGEI 195
>gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional.
Length = 1809
Score = 32.5 bits (74), Expect = 0.86
Identities = 25/76 (32%), Positives = 42/76 (55%), Gaps = 11/76 (14%)
Query: 502 LSGGQRQRIAIARVILKNAPIL----LLDEATSAL---DSEAEIAIQKSLYNLMKGKTVI 554
LSGG+++R A+A+ + A ++ +LDE + L D+ I + K L + +G TV+
Sbjct: 477 LSGGEQERTALAKHL--GAELIGITYILDEPSIGLHPQDTHKLINVIKKLRD--QGNTVL 532
Query: 555 AIAHRLSTISAMDRLI 570
+ H IS DR+I
Sbjct: 533 LVEHDEQMISLADRII 548
Score = 32.1 bits (73), Expect = 1.1
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 4/85 (4%)
Query: 495 VGEHGIKLSGGQRQRIAIARVIL---KNAPILLLDEATSALDSEAEIAIQKSLYNLM-KG 550
+G++ LS ++ I IA+ + K+ + LLDE ++LD++ + A+ L L+ G
Sbjct: 1693 LGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLG 1752
Query: 551 KTVIAIAHRLSTISAMDRLIVLDNG 575
+VI I H + + D LI + G
Sbjct: 1753 HSVIYIDHDPALLKQADYLIEMGPG 1777
>gnl|CDD|171770 PRK12851, groEL, chaperonin GroEL; Reviewed.
Length = 541
Score = 32.0 bits (73), Expect = 1.1
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 6/79 (7%)
Query: 467 FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP----I 522
NA AE + + L ++ G G++A E+G + G + + R L+NA +
Sbjct: 456 ENAG--AEGSVVVGKLREKPGGYGFNAATNEYGDLYAQGVIDPVKVVRTALQNAASVAGL 513
Query: 523 LLLDEATSALDSEAEIAIQ 541
LL EA A + E A
Sbjct: 514 LLTTEAMVAEKPKKEPAPP 532
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this model
include Ras, RhoA, Rab11, translation elongation factor
G, translation initiation factor IF-2, tetratcycline
resistance protein TetM, CDC42, Era, ADP-ribosylation
factors, tdhF, and many others. In some proteins the
domain occurs more than once.This model recognizes a
large number of small GTP-binding proteins and related
domains in larger proteins. Note that the alpha chains
of heterotrimeric G proteins are larger proteins in
which the NKXD motif is separated from the GxxxxGK[ST]
motif (P-loop) by a long insert and are not easily
detected by this model [Unknown function, General].
Length = 162
Score = 30.8 bits (70), Expect = 1.2
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 388 KIGLVGRSGAGKSTINNLLLR 408
KI +VG GKST+ N LL
Sbjct: 3 KIVIVGDPNVGKSTLLNRLLG 23
>gnl|CDD|206747 cd01854, YjeQ_EngC, Ribosomal interacting GTPase YjeQ/EngC, a
circularly permuted subfamily of the Ras GTPases. YjeQ
(YloQ in Bacillus subtilis) is a ribosomal small
subunit-dependent GTPase; hence also known as RsgA. YjeQ
is a late-stage ribosomal biogenesis factor involved in
the 30S subunit maturation, and it represents a protein
family whose members are broadly conserved in bacteria
and have been shown to be essential to the growth of E.
coli and B. subtilis. Proteins of the YjeQ family
contain all sequence motifs typical of the vast class of
P-loop-containing GTPases, but show a circular
permutation, with a G4-G1-G3 pattern of motifs as
opposed to the regular G1-G3-G4 pattern seen in most
GTPases. All YjeQ family proteins display a unique
domain architecture, which includes an N-terminal
OB-fold RNA-binding domain, the central permuted GTPase
domain, and a zinc knuckle-like C-terminal cysteine
domain.
Length = 211
Score = 31.2 bits (72), Expect = 1.2
Identities = 12/17 (70%), Positives = 14/17 (82%), Gaps = 1/17 (5%)
Query: 391 LVGRSGAGKST-INNLL 406
LVG+SG GKST +N LL
Sbjct: 90 LVGQSGVGKSTLLNALL 106
>gnl|CDD|206661 cd01869, Rab1_Ypt1, Rab GTPase family 1 includes the yeast homolog
Ypt1. Rab1/Ypt1 subfamily. Rab1 is found in every
eukaryote and is a key regulatory component for the
transport of vesicles from the ER to the Golgi
apparatus. Studies on mutations of Ypt1, the yeast
homolog of Rab1, showed that this protein is necessary
for the budding of vesicles of the ER as well as for
their transport to, and fusion with, the Golgi
apparatus. GTPase activating proteins (GAPs) interact
with GTP-bound Rab and accelerate the hydrolysis of GTP
to GDP. Guanine nucleotide exchange factors (GEFs)
interact with GDP-bound Rabs to promote the formation of
the GTP-bound state. Rabs are further regulated by
guanine nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 166
Score = 30.4 bits (69), Expect = 1.4
Identities = 17/32 (53%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
K+ L+G SG GKS LLLRF D Y E I
Sbjct: 4 KLLLIGDSGVGKSC---LLLRFADDTYTESYI 32
>gnl|CDD|223775 COG0703, AroK, Shikimate kinase [Amino acid transport and
metabolism].
Length = 172
Score = 30.6 bits (70), Expect = 1.5
Identities = 14/30 (46%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 388 KIGLVGRSGAGKSTINNLL-----LRFYDI 412
I L+G GAGKSTI L L F D
Sbjct: 4 NIVLIGFMGAGKSTIGRALAKALNLPFIDT 33
>gnl|CDD|224084 COG1162, COG1162, Predicted GTPases [General function prediction
only].
Length = 301
Score = 31.1 bits (71), Expect = 1.5
Identities = 15/27 (55%), Positives = 19/27 (70%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYGEI 417
L+G+SG GKST+ N LL + K GEI
Sbjct: 169 LLGQSGVGKSTLINALLPELNQKTGEI 195
>gnl|CDD|168181 PRK05688, fliI, flagellum-specific ATP synthase; Validated.
Length = 451
Score = 31.2 bits (71), Expect = 1.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
IN L LT+ G+++GL +G GKS + ++ RF
Sbjct: 159 INGL-LTVGRGQRLGLFAGTGVGKSVLLGMMTRF 191
>gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit.
Possible exonuclease SbcCD, C subunit, on AAA proteins.
Length = 79
Score = 28.7 bits (65), Expect = 1.7
Identities = 15/47 (31%), Positives = 22/47 (46%), Gaps = 12/47 (25%)
Query: 501 KLSGGQRQRI-------AIARVILKNAP-----ILLLDEATSALDSE 535
LSGG++Q + A+A N ++ LDEA + LD E
Sbjct: 22 TLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEE 68
>gnl|CDD|206660 cd01868, Rab11_like, Rab GTPase family 11 (Rab11)-like includes
Rab11a, Rab11b, and Rab25. Rab11a, Rab11b, and Rab25
are closely related, evolutionary conserved Rab proteins
that are differentially expressed. Rab11a is
ubiquitously synthesized, Rab11b is enriched in brain
and heart and Rab25 is only found in epithelia. Rab11/25
proteins seem to regulate recycling pathways from
endosomes to the plasma membrane and to the trans-Golgi
network. Furthermore, Rab11a is thought to function in
the histamine-induced fusion of tubulovesicles
containing H+, K+ ATPase with the plasma membrane in
gastric parietal cells and in insulin-stimulated
insertion of GLUT4 in the plasma membrane of
cardiomyocytes. Overexpression of Rab25 has recently
been observed in ovarian cancer and breast cancer, and
has been correlated with worsened outcomes in both
diseases. In addition, Rab25 overexpression has also
been observed in prostate cancer, transitional cell
carcinoma of the bladder, and invasive breast tumor
cells. GTPase activating proteins (GAPs) interact with
GTP-bound Rab and accelerate the hydrolysis of GTP to
GDP. Guanine nucleotide exchange factors (GEFs) interact
with GDP-bound Rabs to promote the formation of the
GTP-bound state. Rabs are further regulated by guanine
nucleotide dissociation inhibitors (GDIs), which
facilitate Rab recycling by masking C-terminal lipid
binding and promoting cytosolic localization. Most Rab
GTPases contain a lipid modification site at the
C-terminus, with sequence motifs CC, CXC, or CCX. Lipid
binding is essential for membrane attachment, a key
feature of most Rab proteins. Due to the presence of
truncated sequences in this CD, the lipid modification
site is not available for annotation.
Length = 165
Score = 30.2 bits (69), Expect = 1.9
Identities = 14/22 (63%), Positives = 15/22 (68%), Gaps = 3/22 (13%)
Query: 388 KIGLVGRSGAGKSTINNLLLRF 409
KI L+G SG GKS NLL RF
Sbjct: 5 KIVLIGDSGVGKS---NLLSRF 23
>gnl|CDD|223571 COG0497, RecN, ATPase involved in DNA repair [DNA replication,
recombination, and repair].
Length = 557
Score = 31.0 bits (71), Expect = 2.0
Identities = 22/69 (31%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 502 LSGGQRQRIAIA-RVIL---KNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIA 557
SGG+ RI +A +VIL + P L+ DE + + A+ K L L + V+ +
Sbjct: 432 ASGGELSRIMLALKVILSRKDDTPTLIFDEVDTGISGRVAQAVGKKLRRLSEHHQVLCVT 491
Query: 558 HRLSTISAM 566
H L ++AM
Sbjct: 492 H-LPQVAAM 499
>gnl|CDD|218141 pfam04548, AIG1, AIG1 family. Arabidopsis protein AIG1 appears to
be involved in plant resistance to bacteria.
Length = 211
Score = 30.3 bits (69), Expect = 2.0
Identities = 11/19 (57%), Positives = 15/19 (78%), Gaps = 1/19 (5%)
Query: 389 IGLVGRSGAGKS-TINNLL 406
I LVG++G GKS T N++L
Sbjct: 3 IVLVGKTGNGKSATGNSIL 21
>gnl|CDD|238985 cd02027, APSK, Adenosine 5'-phosphosulfate kinase (APSK) catalyzes
the phosphorylation of adenosine 5'-phosphosulfate to
form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The
end-product PAPS is a biologically "activated" sulfate
form important for the assimilation of inorganic
sulfate.
Length = 149
Score = 29.8 bits (68), Expect = 2.1
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Query: 391 LVGRSGAGKSTINNLL-LRFYDIKYGEILIDGQNI 424
L G SG+GKSTI L + + ++DG N+
Sbjct: 4 LTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38
>gnl|CDD|227760 COG5473, COG5473, Predicted integral membrane protein [Function
unknown].
Length = 290
Score = 30.5 bits (69), Expect = 2.3
Identities = 17/68 (25%), Positives = 28/68 (41%), Gaps = 11/68 (16%)
Query: 39 ILLVIFFTTLTGTFEALL------FAAMG-KIIDLLSNIKPSLLWKNYSSYILLLGFILI 91
+ + F T LL +A+ + +L+N P LLW I+ ++
Sbjct: 198 VFALFFLATTVFAVPLLLDRDVGAISAVETSVRAVLANPGPMLLW----GLIVAAALLIG 253
Query: 92 SSTVFVGL 99
S +FVGL
Sbjct: 254 SLPIFVGL 261
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 29.3 bits (66), Expect = 2.6
Identities = 11/66 (16%), Positives = 24/66 (36%)
Query: 389 IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR 448
I + G G+GK+T+ L ++ + + + +E E + + L
Sbjct: 1 ILITGTPGSGKTTLAKELAERLGDVLRDLAKENGLVLELDEEITDESKRLDEDKLAKLLD 60
Query: 449 SIRDNI 454
+ I
Sbjct: 61 KLEKII 66
>gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional.
Length = 880
Score = 30.8 bits (70), Expect = 2.8
Identities = 26/80 (32%), Positives = 40/80 (50%), Gaps = 15/80 (18%)
Query: 502 LSGGQRQ------RIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-----KG 550
LSGG+R R+A++ + N P+L+LDE T LD E ++ L ++M K
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEER----RRKLVDIMERYLRKI 844
Query: 551 KTVIAIAHRLSTISAMDRLI 570
VI ++H A D +I
Sbjct: 845 PQVIIVSHDEELKDAADYVI 864
>gnl|CDD|206743 cd11383, YfjP, YfjP GTPase. The Era (E. coli Ras-like
protein)-like YfjP subfamily includes several
uncharacterized bacterial GTPases that are similar to
Era. They generally show sequence conservation in the
region between the Walker A and B motifs (G1 and G3 box
motifs), to the exclusion of other GTPases. Era is
characterized by a distinct derivative of the KH domain
(the pseudo-KH domain) which is located C-terminal to
the GTPase domain.
Length = 140
Score = 29.2 bits (66), Expect = 2.9
Identities = 10/17 (58%), Positives = 15/17 (88%)
Query: 390 GLVGRSGAGKSTINNLL 406
GL+G++GAGKS++ N L
Sbjct: 1 GLMGKTGAGKSSLCNAL 17
>gnl|CDD|180875 PRK07196, fliI, flagellum-specific ATP synthase; Validated.
Length = 434
Score = 30.6 bits (69), Expect = 2.9
Identities = 15/34 (44%), Positives = 23/34 (67%), Gaps = 1/34 (2%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
IN L LTI G+++GL+ SG GKS + ++ R+
Sbjct: 146 INGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRY 178
>gnl|CDD|206748 cd01855, YqeH, Circularly permuted YqeH GTPase. YqeH is an
essential GTP-binding protein. Depletion of YqeH induces
an excess initiation of DNA replication, suggesting that
it negatively controls initiation of chromosome
replication. The YqeH subfamily is common in eukaryotes
and sporadically present in bacteria with probable
acquisition by plants from chloroplasts. Proteins of the
YqeH family contain all sequence motifs typical of the
vast class of P-loop-containing GTPases, but show a
circular permutation, with a G4-G1-G3 pattern of motifs
as opposed to the regular G1-G3-G4 pattern seen in most
GTPases.
Length = 191
Score = 29.9 bits (68), Expect = 3.0
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413
+I + + + +VG + GKST+ N LL+ K
Sbjct: 114 LIEEIKKLAKYRGDVYVVGATNVGKSTLINALLKSNGGK 152
>gnl|CDD|201353 pfam00625, Guanylate_kin, Guanylate kinase.
Length = 183
Score = 29.6 bits (67), Expect = 3.1
Identities = 13/25 (52%), Positives = 14/25 (56%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYG 415
L G SG GKS I LL Y K+G
Sbjct: 7 LSGPSGVGKSHIKKALLDEYPEKFG 31
>gnl|CDD|206665 cd01876, YihA_EngB, YihA (EngB) GTPase family. The YihA (EngB)
subfamily of GTPases is typified by the E. coli YihA, an
essential protein involved in cell division control.
YihA and its orthologs are small proteins that typically
contain less than 200 amino acid residues and consists
of the GTPase domain only (some of the eukaryotic
homologs contain an N-terminal extension of about 120
residues that might be involved in organellar
targeting). Homologs of yihA are found in most
Gram-positive and Gram-negative pathogenic bacteria,
with the exception of Mycobacterium tuberculosis. The
broad-spectrum nature of YihA and its essentiality for
cell viability in bacteria make it an attractive
antibacterial target.
Length = 170
Score = 29.4 bits (67), Expect = 3.4
Identities = 17/73 (23%), Positives = 29/73 (39%), Gaps = 20/73 (27%)
Query: 389 IGLVGRSGAGKST-INNLLLR-----------------FYDIKYGEILID--GQNISNVS 428
+ GRS GKS+ IN L R F+++ L+D G + VS
Sbjct: 2 VAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFFNVGDKFRLVDLPGYGYAKVS 61
Query: 429 QESLREQIGMVTQ 441
+E + ++ +
Sbjct: 62 KEVREKWGKLIEE 74
>gnl|CDD|184390 PRK13913, PRK13913, 3-methyladenine DNA glycosylase; Provisional.
Length = 218
Score = 29.8 bits (67), Expect = 3.6
Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 8/65 (12%)
Query: 51 TFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISST----VFVGLQTLFKHQ 106
+FE L K +DLL N P+ W N + LLG +L +T V L+ L
Sbjct: 4 SFELLKAL---KSLDLLKN-APAWWWPNALKFEALLGAVLTQNTKFEAVEKSLENLKNAF 59
Query: 107 VLSGN 111
+L +
Sbjct: 60 ILEND 64
>gnl|CDD|206646 cd00880, Era_like, E. coli Ras-like protein (Era)-like GTPase. The
Era (E. coli Ras-like protein)-like family includes
several distinct subfamilies (TrmE/ThdF, FeoB, YihA
(EngB), Era, and EngA/YfgK) that generally show sequence
conservation in the region between the Walker A and B
motifs (G1 and G3 box motifs), to the exclusion of other
GTPases. TrmE is ubiquitous in bacteria and is a
widespread mitochondrial protein in eukaryotes, but is
absent from archaea. The yeast member of TrmE family,
MSS1, is involved in mitochondrial translation;
bacterial members are often present in
translation-related operons. FeoB represents an unusual
adaptation of GTPases for high-affinity iron (II)
transport. YihA (EngB) family of GTPases is typified by
the E. coli YihA, which is an essential protein involved
in cell division control. Era is characterized by a
distinct derivative of the KH domain (the pseudo-KH
domain) which is located C-terminal to the GTPase
domain. EngA and its orthologs are composed of two
GTPase domains and, since the sequences of the two
domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family.
Length = 161
Score = 29.1 bits (66), Expect = 3.7
Identities = 13/39 (33%), Positives = 17/39 (43%), Gaps = 13/39 (33%)
Query: 390 GLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS 428
+ GR GKS++ N LL GQN+ VS
Sbjct: 1 AIFGRPNVGKSSLLNALL-------------GQNVGIVS 26
>gnl|CDD|234395 TIGR03918, GTP_HydF, [FeFe] hydrogenase H-cluster maturation GTPase
HydF. This model describes the family of the [Fe]
hydrogenase maturation protein HypF as characterized in
Chlamydomonas reinhardtii and found, in an operon with
radical SAM proteins HydE and HydG, in numerous
bacteria. It has GTPase activity, can bind an 4Fe-4S
cluster, and is essential for hydrogenase activity
[Protein fate, Protein modification and repair].
Length = 391
Score = 29.8 bits (68), Expect = 4.5
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 15/41 (36%)
Query: 389 IGLVGRSGAGKST-INNLLLRFYDIKYGEILIDGQNISNVS 428
IG+ GR AGKS+ IN L GQ+I+ VS
Sbjct: 9 IGIFGRRNAGKSSLINALT--------------GQDIAIVS 35
>gnl|CDD|237808 PRK14734, coaE, dephospho-CoA kinase; Provisional.
Length = 200
Score = 29.0 bits (65), Expect = 4.7
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 5/37 (13%)
Query: 389 IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNIS 425
IGL G G+GKST+ +LL G +++D ++
Sbjct: 4 IGLTGGIGSGKSTVADLLSS-----EGFLIVDADQVA 35
>gnl|CDD|180696 PRK06793, fliI, flagellum-specific ATP synthase; Validated.
Length = 432
Score = 29.6 bits (66), Expect = 5.4
Identities = 13/28 (46%), Positives = 19/28 (67%)
Query: 381 LTIQPGEKIGLVGRSGAGKSTINNLLLR 408
LTI G+KIG+ SG GKST+ ++ +
Sbjct: 151 LTIGIGQKIGIFAGSGVGKSTLLGMIAK 178
>gnl|CDD|234770 PRK00454, engB, GTP-binding protein YsxC; Reviewed.
Length = 196
Score = 28.9 bits (66), Expect = 5.5
Identities = 17/54 (31%), Positives = 23/54 (42%), Gaps = 11/54 (20%)
Query: 359 KIFFKNVSF---SYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST-INNLLLR 408
K+F N F + + L ++ E I GRS GKS+ IN L R
Sbjct: 1 KLFIHNAEFVTSAPKLEQLPPDDGP------E-IAFAGRSNVGKSSLINALTNR 47
>gnl|CDD|223997 COG1071, AcoA, Pyruvate/2-oxoglutarate dehydrogenase complex,
dehydrogenase (E1) component, eukaryotic type, alpha
subunit [Energy production and conversion].
Length = 358
Score = 29.5 bits (67), Expect = 5.6
Identities = 17/61 (27%), Positives = 24/61 (39%), Gaps = 13/61 (21%)
Query: 252 DFLKKIYQQMRLISSFEI-INHLLAMLLILGTTGCALFLWTKGILGIG--AVAAATAMSL 308
+ L ++Y+ M LI F+ + L I G L IG AV A +L
Sbjct: 27 EELLELYRLMLLIRRFDEKMLQLQRQGKIGGFY----------HLYIGQEAVQVGAAAAL 76
Query: 309 R 309
R
Sbjct: 77 R 77
>gnl|CDD|238991 cd02034, CooC, The accessory protein CooC, which contains a
nucleotide-binding domain (P-loop) near the N-terminus,
participates in the maturation of the nickel center of
carbon monoxide dehydrogenase (CODH). CODH from
Rhodospirillum rubrum catalyzes the reversible oxidation
of CO to CO2. CODH contains a nickel-iron-sulfur cluster
(C-center) and an iron-sulfur cluster (B-center). CO
oxidation occurs at the C-center. Three accessory
proteins encoded by cooCTJ genes are involved in nickel
incorporation into a nickel site. CooC functions as a
nickel insertase that mobilizes nickel to apoCODH using
energy released from ATP hydrolysis. CooC is a homodimer
and has NTPase activities. Mutation at the P-loop
abolishs its function.
Length = 116
Score = 28.0 bits (63), Expect = 5.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Query: 388 KIGLVGRSGAGKSTINNLLLRF 409
KI + G+ G GK+TI LL R+
Sbjct: 1 KIAITGKGGVGKTTIAALLARY 22
>gnl|CDD|235335 PRK05057, aroK, shikimate kinase I; Reviewed.
Length = 172
Score = 28.9 bits (65), Expect = 5.8
Identities = 15/28 (53%), Positives = 16/28 (57%), Gaps = 5/28 (17%)
Query: 389 IGLVGRSGAGKSTI-----NNLLLRFYD 411
I LVG GAGKSTI L + FYD
Sbjct: 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYD 34
>gnl|CDD|213817 TIGR03496, FliI_clade1, flagellar protein export ATPase FliI.
Members of this protein family are the FliI protein of
bacterial flagellum systems. This protein acts to drive
protein export for flagellar biosynthesis. The most
closely related family is the YscN family of bacterial
type III secretion systems. This model represents one
(of three) segment of the FliI family tree. These have
been modeled separately in order to exclude the type III
secretion ATPases more effectively [Cellular processes,
Chemotaxis and motility].
Length = 411
Score = 29.4 bits (67), Expect = 6.2
Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKST 401
IN L LT+ G+++G+ SG GKST
Sbjct: 128 INGL-LTVGRGQRMGIFAGSGVGKST 152
>gnl|CDD|206649 cd01850, CDC_Septin, CDC/Septin GTPase family. Septins are a
conserved family of GTP-binding proteins associated with
diverse processes in dividing and non-dividing cells.
They were first discovered in the budding yeast S.
cerevisiae as a set of genes (CDC3, CDC10, CDC11 and
CDC12) required for normal bud morphology. Septins are
also present in metazoan cells, where they are required
for cytokinesis in some systems, and implicated in a
variety of other processes involving organization of the
cell cortex and exocytosis. In humans, 12 septin genes
generate dozens of polypeptides, many of which comprise
heterooligomeric complexes. Since septin mutants are
commonly defective in cytokinesis and formation of the
neck formation of the neck filaments/septin rings,
septins have been considered to be the primary
constituents of the neck filaments. Septins belong to
the GTPase superfamily for their conserved GTPase motifs
and enzymatic activities.
Length = 275
Score = 29.1 bits (66), Expect = 6.5
Identities = 14/26 (53%), Positives = 15/26 (57%), Gaps = 2/26 (7%)
Query: 391 LVGRSGAGKST-INNLLLR-FYDIKY 414
+VG SG GKST IN L Y KY
Sbjct: 9 VVGESGLGKSTFINTLFGTKLYPSKY 34
>gnl|CDD|223551 COG0475, KefB, Kef-type K+ transport systems, membrane components
[Inorganic ion transport and metabolism].
Length = 397
Score = 29.1 bits (66), Expect = 7.1
Identities = 14/71 (19%), Positives = 29/71 (40%), Gaps = 4/71 (5%)
Query: 138 GRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYT 197
G + T+ Q + ++ DI + + IV L G+ +V + ++ I A++
Sbjct: 143 GLLKTREGQLILGA----LVFDDIAAILLLAIVPALAGGGSGSVGFILGLLLAILAFLAL 198
Query: 198 LIYFIPRLNKT 208
L+ L
Sbjct: 199 LLLLGRYLLPP 209
>gnl|CDD|234719 PRK00300, gmk, guanylate kinase; Provisional.
Length = 205
Score = 28.5 bits (65), Expect = 7.3
Identities = 16/45 (35%), Positives = 22/45 (48%), Gaps = 14/45 (31%)
Query: 391 LVGRSGAGKSTINNLLL-RFYDIKY-----------GEILIDGQN 423
L G SGAGKST+ LL R +++ GE +DG +
Sbjct: 10 LSGPSGAGKSTLVKALLERDPNLQLSVSATTRAPRPGE--VDGVD 52
>gnl|CDD|237700 PRK14397, PRK14397, membrane protein; Provisional.
Length = 222
Score = 28.7 bits (64), Expect = 7.4
Identities = 11/39 (28%), Positives = 19/39 (48%)
Query: 278 LILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHW 316
L+L C L +W G + +G++ TA+ + L W
Sbjct: 121 LLLSGILCLLVIWRSGFVSLGSLTLVTALPVMLLITGKW 159
>gnl|CDD|179661 PRK03846, PRK03846, adenylylsulfate kinase; Provisional.
Length = 198
Score = 28.4 bits (64), Expect = 7.6
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Query: 393 GRSGAGKSTINNLL-LRFYDIKYGEILIDGQNI 424
G SG+GKST+ L +++ L+DG N+
Sbjct: 31 GLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63
>gnl|CDD|206681 cd01894, EngA1, EngA1 GTPase contains the first domain of EngA.
This EngA1 subfamily CD represents the first GTPase
domain of EngA and its orthologs, which are composed of
two adjacent GTPase domains. Since the sequences of the
two domains are more similar to each other than to other
GTPases, it is likely that an ancient gene duplication,
rather than a fusion of evolutionarily distinct GTPases,
gave rise to this family. Although the exact function of
these proteins has not been elucidated, studies have
revealed that the E. coli EngA homolog, Der, and
Neisseria gonorrhoeae EngA are essential for cell
viability. A recent report suggests that E. coli Der
functions in ribosome assembly and stability.
Length = 157
Score = 28.2 bits (64), Expect = 8.0
Identities = 15/44 (34%), Positives = 18/44 (40%), Gaps = 12/44 (27%)
Query: 391 LVGRSGAGKSTINNLLLRFY------------DIKYGEILIDGQ 422
+VGR GKST+ N L D KYGE G+
Sbjct: 2 IVGRPNVGKSTLFNRLTGRRDAIVSDTPGVTRDRKYGEAEWGGR 45
>gnl|CDD|233065 TIGR00634, recN, DNA repair protein RecN. All proteins in this
family for which functions are known are ATP binding
proteins involved in the initiation of recombination and
recombinational repair [DNA metabolism, DNA replication,
recombination, and repair].
Length = 563
Score = 28.9 bits (65), Expect = 8.0
Identities = 24/85 (28%), Positives = 38/85 (44%), Gaps = 9/85 (10%)
Query: 490 GYDAHVGEHGIKL----SGGQRQRIAIA-RVIL---KNAPILLLDEATSALDSEAEIAIQ 541
+ A+ GE L SGG+ R+ +A +V+L L+ DE + E AI
Sbjct: 425 LFSANTGEPVKPLAKVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIA 484
Query: 542 KSLYNLMKGKTVIAIAHRLSTISAM 566
K L L + V+ + H L ++A
Sbjct: 485 KKLAQLSERHQVLCVTH-LPQVAAH 508
>gnl|CDD|181182 PRK07960, fliI, flagellum-specific ATP synthase; Validated.
Length = 455
Score = 29.0 bits (65), Expect = 8.1
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
IN L LT+ G+++GL SG GKS + ++ R+
Sbjct: 166 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY 198
>gnl|CDD|234654 PRK00131, aroK, shikimate kinase; Reviewed.
Length = 175
Score = 28.2 bits (64), Expect = 8.2
Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 5/35 (14%)
Query: 383 IQPGEKIGLVGRSGAGKSTINNLL-----LRFYDI 412
+ G I L+G GAGKSTI LL F D
Sbjct: 1 MLKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35
>gnl|CDD|237039 PRK12288, PRK12288, GTPase RsgA; Reviewed.
Length = 347
Score = 29.1 bits (66), Expect = 8.2
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 392 VGRSGAGKSTINNLLLRFYDIKYGEI 417
VG+SG GKS++ N LL +I G++
Sbjct: 211 VGQSGVGKSSLINALLPEAEILVGDV 236
>gnl|CDD|238556 cd01136, ATPase_flagellum-secretory_path_III, Flagellum-specific
ATPase/type III secretory pathway virulence-related
protein. This group of ATPases are responsible for the
export of flagellum and virulence-related proteins. The
bacterial flagellar motor is similar to the F0F1-ATPase,
in that they both are proton driven rotary molecular
devices. However, the main function of the bacterial
flagellar motor is to rotate the flagellar filament for
cell motility. Intracellular pathogens such as
Salmonella and Chlamydia also have proteins which are
similar to the flagellar-specific ATPase, but function
in the secretion of virulence-related proteins via the
type III secretory pathway.
Length = 326
Score = 28.8 bits (65), Expect = 8.4
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKST 401
I+ L LT+ G+++G+ SG GKST
Sbjct: 59 AIDGL-LTVGKGQRLGIFAGSGVGKST 84
>gnl|CDD|213206 cd03239, ABC_SMC_head, The SMC head domain belongs to the
ATP-binding cassette superfamily. The structural
maintenance of chromosomes (SMC) proteins are essential
for successful chromosome transmission during
replication and segregation of the genome in all
organisms. SMCs are generally present as single proteins
in bacteria, and as at least six distinct proteins in
eukaryotes. The proteins range in size from
approximately 110 to 170 kDa, and each has five distinct
domains: amino- and carboxy-terminal globular domains,
which contain sequences characteristic of ATPases, two
coiled-coil regions separating the terminal domains ,
and a central flexible hinge. SMC proteins function
together with other proteins in a range of chromosomal
transactions, including chromosome condensation,
sister-chromatid cohesion, recombination, DNA repair,
and epigenetic silencing of gene expression.
Length = 178
Score = 28.0 bits (63), Expect = 9.0
Identities = 19/74 (25%), Positives = 30/74 (40%), Gaps = 5/74 (6%)
Query: 502 LSGGQRQRIAIARVI----LKNAPILLLDEATSALD-SEAEIAIQKSLYNLMKGKTVIAI 556
LSGG++ A+A + +K +P +LDE +ALD + I I
Sbjct: 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVI 154
Query: 557 AHRLSTISAMDRLI 570
+ D+LI
Sbjct: 155 TLKKEMFENADKLI 168
>gnl|CDD|206656 cd01863, Rab18, Rab GTPase family 18 (Rab18). Rab18 subfamily.
Mammalian Rab18 is implicated in endocytic transport and
is expressed most highly in polarized epithelial cells.
However, trypanosomal Rab, TbRAB18, is upregulated in
the BSF (Blood Stream Form) stage and localized
predominantly to elements of the Golgi complex. In human
and mouse cells, Rab18 has been identified in lipid
droplets, organelles that store neutral lipids. GTPase
activating proteins (GAPs) interact with GTP-bound Rab
and accelerate the hydrolysis of GTP to GDP. Guanine
nucleotide exchange factors (GEFs) interact with
GDP-bound Rabs to promote the formation of the GTP-bound
state. Rabs are further regulated by guanine nucleotide
dissociation inhibitors (GDIs), which facilitate Rab
recycling by masking C-terminal lipid binding and
promoting cytosolic localization. Most Rab GTPases
contain a lipid modification site at the C-terminus,
with sequence motifs CC, CXC, or CCX. Lipid binding is
essential for membrane attachment, a key feature of most
Rab proteins. Due to the presence of truncated sequences
in this CD, the lipid modification site is not available
for annotation.
Length = 161
Score = 28.0 bits (63), Expect = 9.2
Identities = 15/24 (62%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
KI L+G SG GKS+ LLLRF D
Sbjct: 2 KILLIGDSGVGKSS---LLLRFTD 22
>gnl|CDD|238026 cd00071, GMPK, Guanosine monophosphate kinase (GMPK, EC 2.7.4.8),
also known as guanylate kinase (GKase), catalyzes the
reversible phosphoryl transfer from adenosine
triphosphate (ATP) to guanosine monophosphate (GMP) to
yield adenosine diphosphate (ADP) and guanosine
diphosphate (GDP). It plays an essential role in the
biosynthesis of guanosine triphosphate (GTP). This
enzyme is also important for the activation of some
antiviral and anticancer agents, such as acyclovir,
ganciclovir, carbovir, and thiopurines.
Length = 137
Score = 27.9 bits (63), Expect = 9.5
Identities = 11/21 (52%), Positives = 13/21 (61%)
Query: 391 LVGRSGAGKSTINNLLLRFYD 411
L G SG GKST+ LL +D
Sbjct: 4 LSGPSGVGKSTLLKRLLEEFD 24
>gnl|CDD|238260 cd00464, SK, Shikimate kinase (SK) is the fifth enzyme in the
shikimate pathway, a seven-step biosynthetic pathway
which converts erythrose-4-phosphate to chorismic acid,
found in bacteria, fungi and plants. Chorismic acid is a
important intermediate in the synthesis of aromatic
compounds, such as aromatic amino acids, p-aminobenzoic
acid, folate and ubiquinone. Shikimate kinase catalyses
the phosphorylation of the 3-hydroxyl group of shikimic
acid using ATP.
Length = 154
Score = 27.9 bits (63), Expect = 9.7
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 5/29 (17%)
Query: 389 IGLVGRSGAGKSTINNLL-----LRFYDI 412
I L+G GAGK+T+ LL L F D+
Sbjct: 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDL 30
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.411
Gapped
Lambda K H
0.267 0.0760 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 31,647,584
Number of extensions: 3294337
Number of successful extensions: 6860
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6211
Number of HSP's successfully gapped: 843
Length of query: 604
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 502
Effective length of database: 6,413,494
Effective search space: 3219573988
Effective search space used: 3219573988
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 62 (27.6 bits)