RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13349
(604 letters)
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; HET: ANP; 3.70A {Salmonella
typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A*
3b5z_A* 3b5w_A
Length = 582
Score = 420 bits (1081), Expect = e-140
Identities = 160/590 (27%), Positives = 280/590 (47%), Gaps = 59/590 (10%)
Query: 36 RKYILLVIFFTTLTGTFEALLFAAMGKIID-LLSNIKPSLLWKNYSSYILLLGFILISST 94
+ +++ L + + + + ++D S+L L++ ++I
Sbjct: 24 KAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLW----MPLVVIGLMILRG 79
Query: 95 VFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKV------MQTS 148
+ + + V SG M +R ++ + FF ++ G + +++ + +S
Sbjct: 80 ITSYISSYCISWV-SGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASS 138
Query: 149 I------AIRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFI 202
+R+ IIG L + Y L+II + +L P V +
Sbjct: 139 SSGALITVVREGASIIG--LFIMMFYYSWQLSII----LVVLAPIVSIA------IRVVS 186
Query: 203 PRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMI--DFLKKIYQQ 260
R +++ +T V +F E RF + + +
Sbjct: 187 KRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETK--RFDKVSNKMRLQGMKM 244
Query: 261 MRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAA-ATAMSLRLNGISHWVMW 319
+ S + I L+A L + A F L G + ++M +M
Sbjct: 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIA--------LMR 296
Query: 320 EIAALFESIGTIQDGM-------NMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSY-DQ 371
+ +L Q GM +L + + + + + G + F+NV+F+Y +
Sbjct: 297 PLKSLTNVNAQFQRGMAACQTLFAILDSEQEKDEG--KRVIDRATGDLEFRNVTFTYPGR 354
Query: 372 KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES 431
+ + N++L I G+ + LVGRSG+GKSTI +L+ RFYDI G IL+DG ++ + S
Sbjct: 355 EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 414
Query: 432 LREQIGMVTQDTSLLHRSIRDNILYGRPDA-SECELFNAAKCAEADIFIKSLTDEHGRKG 490
LR Q+ +V+Q+ L + ++ +NI Y R + S ++ AA+ A A FI + + G
Sbjct: 415 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDN-----G 469
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKG 550
D +GE+G+ LSGGQRQRIAIAR +L+++PIL+LDEATSALD+E+E AIQ +L L K
Sbjct: 470 LDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKN 529
Query: 551 KTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
+T + IAHRLSTI D ++V+++G + E G+H +LL ++G+Y++L + Q
Sbjct: 530 RTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQHGVYAQLHKMQ 579
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter,
lipid flippase, hydrolase, inner membrane, lipid
transport, membrane; 5.50A {Vibrio cholerae}
Length = 582
Score = 417 bits (1075), Expect = e-140
Identities = 154/590 (26%), Positives = 275/590 (46%), Gaps = 59/590 (10%)
Query: 36 RKYILLVIFFTTLTGTFEALLFAAMGKIID-LLSNIKPSLLWKNYSSYILLLGFILISST 94
+ +++ + + + + + ++D N + + L ++ ++
Sbjct: 24 KAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRI----LPFMILGLMFVRG 79
Query: 95 VFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKV------MQTS 148
+ + V SGN M +R ++ + FF +E G + +++ + +
Sbjct: 80 LSGFASSYCLSWV-SGNVVMQMRRRLFNHFMHMPVRFFDQESTGGLLSRITYDSEQVAGA 138
Query: 149 IA------IRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFI 202
+ +R+ IIG L+ + + L+++ + ++ P V + + +
Sbjct: 139 TSRALVSIVREGASIIG--LLTLMFWNSWQLSLV----LIVVAPVVAFA------ISFVS 186
Query: 203 PRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMI--DFLKKIYQQ 260
R K + + TA +T V + E RF + ++ +
Sbjct: 187 KRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERK--RFDKVSNSMRQQTMKL 244
Query: 261 MRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAA-ATAMSLRLNGISHWVMW 319
+ S + + ++A L + A + L G +AM +M
Sbjct: 245 VSAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFG--------LMR 296
Query: 320 EIAALFESIGTIQDGM-------NMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQK 372
+ AL Q GM ++ + + + NG++ K+V+F+Y K
Sbjct: 297 PLKALTSVTSEFQRGMAACQTLFGLMDLETERDNG--KYEAERVNGEVDVKDVTFTYQGK 354
Query: 373 -HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES 431
++++S +I G+ + LVGRSG+GKSTI NL RFYD+ G I +DG ++ + +
Sbjct: 355 EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTN 414
Query: 432 LREQIGMVTQDTSLLHRSIRDNILYG-RPDASECELFNAAKCAEADIFIKSLTDEHGRKG 490
LR +V+Q+ L + +I +NI Y + + ++ AA+ A A FI+++ G
Sbjct: 415 LRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQ-----G 469
Query: 491 YDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKG 550
D +GE+G LSGGQRQR+AIAR +L++AP+L+LDEATSALD+E+E AIQ +L L K
Sbjct: 470 LDTVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKN 529
Query: 551 KTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
KTV+ IAHRLSTI D ++V+D G + E G H DLL ++G Y++L R Q
Sbjct: 530 KTVLVIAHRLSTIEQADEILVVDEGEIIERGRHADLLAQDGAYAQLHRIQ 579
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 416 bits (1071), Expect = e-139
Identities = 175/592 (29%), Positives = 273/592 (46%), Gaps = 55/592 (9%)
Query: 36 RKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTV 95
+ I I + L+ + ID + N + + +G L +
Sbjct: 13 KYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVI 72
Query: 96 FVGLQTLFKH---QVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIR 152
+ Q S +R + + S F+ G++ ++V I
Sbjct: 73 VRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRV------IN 126
Query: 153 DIFVIIGDILVFITIYIVT-ILTIIGTFNVYML-------------FPFVIWISAYIYTL 198
D+ D ++ + I +TII M FPF I
Sbjct: 127 DVEQT-KDFILTGLMNIWLDCITIIIAL-SIMFFLDVKLTLAALFIFPFYILTV------ 178
Query: 199 IYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFAMI--DFLKK 256
F RL K ++ A + + G + + I VK F+ E F +FL +
Sbjct: 179 YVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNE--AKNFDKKNTNFLTR 236
Query: 257 IYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHW 316
+ R + + + + + G +L G + +G +AA L
Sbjct: 237 ALKHTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELL------ 290
Query: 317 VMWEIAALFESIGTIQDGM-------NMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSY 369
+ L S T+ ++ + Y I + A+ + + G+I +VSF Y
Sbjct: 291 -FGPLRRLVASFTTLTQSFASMDRVFQLIDEDYDIKNGVGAQPIEIKQGRIDIDHVSFQY 349
Query: 370 -DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS 428
D + I+ +++L+I+ GE + VG SG GKST+ NL+ RFYD+ G+ILIDG NI +
Sbjct: 350 NDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFL 409
Query: 429 QESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGR 488
SLR QIG+V QD L ++++NIL GRP A++ E+ AAK A A FI +L
Sbjct: 410 TGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQ---- 465
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM 548
GYD VGE G+KLSGGQ+QR++IAR+ L N PIL+LDEATSALD E+E IQ++L L
Sbjct: 466 -GYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS 524
Query: 549 KGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQ 600
K +T + +AHRLSTI+ D+++V++NG + E G+H +L+ K G Y L+ Q
Sbjct: 525 KDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQGAYEHLYSIQ 576
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter,
ABCB6, nucleotide binding domain, heme BIOS transport
protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A*
3nhb_A*
Length = 306
Score = 400 bits (1029), Expect = e-137
Identities = 125/268 (46%), Positives = 169/268 (63%), Gaps = 5/268 (1%)
Query: 335 MNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGR 394
++L ++ ++ D A L G+I F+NV FSY + ++S T+ PG+ + LVG
Sbjct: 29 FDLLKEETEVKDLPGAGPLRFQKGRIEFENVHFSYADGRETLQDVSFTVMPGQTLALVGP 88
Query: 395 SGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI 454
SGAGKSTI LL RFYDI G I IDGQ+IS V+Q SLR IG+V QDT L + +I DNI
Sbjct: 89 SGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNI 148
Query: 455 LYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514
YGR A E+ AA+ A I + + GY VGE G+KLSGG++QR+AIAR
Sbjct: 149 RYGRVTAGNDEVEAAAQAAGIHDAIMAFPE-----GYRTQVGERGLKLSGGEKQRVAIAR 203
Query: 515 VILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDN 574
ILK I+LLDEATSALD+ E AIQ SL + +T I +AHRLST+ D+++V+ +
Sbjct: 204 TILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIKD 263
Query: 575 GCVAEEGSHLDLLKKNGLYSRLWRHQNK 602
GC+ E G H LL + G+Y+ +W+ Q
Sbjct: 264 GCIVERGRHEALLSRGGVYADMWQLQQG 291
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural
genomics, structural genomics consortium, SGC; 2.20A
{Plasmodium yoelii yoelii str}
Length = 260
Score = 383 bits (987), Expect = e-131
Identities = 112/262 (42%), Positives = 167/262 (63%), Gaps = 8/262 (3%)
Query: 344 IVDNYNAKRLVVTNGKIFFKNVSFSYDQK--HLIINNLSLTIQPGEKIGLVGRSGAGKST 401
+ I F +V+FSY ++ H + +++ I G LVG +G+GKST
Sbjct: 2 LESFSLTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKST 61
Query: 402 INNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDA 461
I LL RFYD + G+I I G+N++ ++ S+R IG+V QDT L + +I+ NILYG+ DA
Sbjct: 62 IAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDA 120
Query: 462 SECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAP 521
++ E+ A K A+ FI++L +D VG G+KLSGG+RQRIAIAR +LK+
Sbjct: 121 TDEEVIKATKSAQLYDFIEALPK-----KWDTIVGNKGMKLSGGERQRIAIARCLLKDPK 175
Query: 522 ILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581
I++ DEATS+LDS+ E QK++ +L K +T+I IAHRLSTIS+ + +I+L+ G + E+G
Sbjct: 176 IVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKG 235
Query: 582 SHLDLLKKNGLYSRLWRHQNKN 603
+H DLLK NG Y+ +W Q+
Sbjct: 236 THKDLLKLNGEYAEMWNMQSGG 257
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 375 bits (966), Expect = e-128
Identities = 105/242 (43%), Positives = 155/242 (64%), Gaps = 6/242 (2%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ ++V F+YD I+ ++S QP I G SG GKSTI +LL RFY GEI I
Sbjct: 2 LSARHVDFAYDDSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITI 61
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYG-RPDASECELFNAAKCAEADIF 478
DGQ I N+S E+ R QIG V+QD++++ +IR+N+ YG D ++ +L+ A A F
Sbjct: 62 DGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSF 121
Query: 479 IKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
++++ D + VGE G+K+SGGQRQR+AIAR L+N IL+LDEAT++LDSE+E
Sbjct: 122 VENMPD-----QLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESES 176
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWR 598
+QK+L +LMKG+T + IAHRLSTI D++ ++ G + G H +L+ + LY++
Sbjct: 177 MVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATHPLYAKYVS 236
Query: 599 HQ 600
Q
Sbjct: 237 EQ 238
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB;
ABC-transporter, transport protein; HET: ADP; 1.60A
{Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A*
2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Length = 247
Score = 374 bits (964), Expect = e-128
Identities = 116/247 (46%), Positives = 164/247 (66%), Gaps = 7/247 (2%)
Query: 357 NGKIFFKNVSFSYD-QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYG 415
+ I F+N+ F Y +I++N++L+I+ GE IG+VGRSG+GKST+ L+ RFY + G
Sbjct: 5 HHDITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENG 64
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEA 475
++LIDG +++ LR Q+G+V QD LL+RSI DNI P S ++ AAK A A
Sbjct: 65 QVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGA 124
Query: 476 DIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
FI L + GY+ VGE G LSGGQRQRIAIAR ++ N IL+ DEATSALD E
Sbjct: 125 HDFISELRE-----GYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYE 179
Query: 536 AEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLL-KKNGLYS 594
+E I ++++ + KG+TVI IAHRLST+ DR+IV++ G + E+G H +LL + LYS
Sbjct: 180 SEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYS 239
Query: 595 RLWRHQN 601
L++ Q+
Sbjct: 240 YLYQLQS 246
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial;
membrane protein, mitochondrial transport; HET: ACP LMT
CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Length = 595
Score = 383 bits (986), Expect = e-126
Identities = 173/600 (28%), Positives = 268/600 (44%), Gaps = 69/600 (11%)
Query: 36 RKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTV 95
R+ + + F T++ +GKIID++ N + L L + +
Sbjct: 18 RRRLAAAVGFLTMSSVISMSAPFFLGKIIDVIYTNPTVDYSDNLTRLCLGLSAVFLCGAA 77
Query: 96 FVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQE----EFAGRIA--TKVMQT-- 147
++ Q LR + IL Q + FF + E R++ T ++
Sbjct: 78 ANAIRVYL-MQTSGQRIVNRLRTSLFSSILRQEVAFFDKTRTGELINRLSSDTALLGRSV 136
Query: 148 ----SIAIRDIFVIIGDILV-FITIYIVTILTIIGTFNVYMLFPFVIWISAYIYTLIYFI 202
S +R I + F + + + P V I A IY ++
Sbjct: 137 TENLSDGLRAGAQASVGISMMFFVSPNLATFVLS-------VVPPVS-IIAVIYG--RYL 186
Query: 203 PRLNKTAESQ-ATARSLMTGRITDAYANIMTVKLFSHAGREANYARFA-MIDFLKKIYQQ 260
+L T +Q + A++ T + N+ TV+ F E ++A +D + ++ ++
Sbjct: 187 RKL--TKVTQDSLAQA--TQLAEERIGNVRTVRAFGKEMTEI--EKYASKVDHVMQLARK 240
Query: 261 MRLISSFEIINHLLAMLLILGTTGCALFLW------TKGILGIGAVAAATAMSLRLNGIS 314
+ + G L+ + +G +++ M GIS
Sbjct: 241 EAFARAG-----FFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSS-FLMYAFWVGIS 294
Query: 315 HWVMWEIAALFESIGTIQDG-------MNMLSKKYKIVDNYNAKRLVVT-NGKIFFKNVS 366
I L + G +L ++ K+ N + G + FKNV
Sbjct: 295 ------IGGLSSFYSELMKGLGAGGRLWELLEREPKLPFNEGVILNEKSFQGALEFKNVH 348
Query: 367 FSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI 424
F+Y + I + SL+I G LVG SG+GKST+ +LLLR YD G I +DG +I
Sbjct: 349 FAYPARPEVPIFQDFSLSIPSGSVTALVGPSGSGKSTVLSLLLRLYDPASGTISLDGHDI 408
Query: 425 SNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD---ASECELFNAAKCAEADIFIKS 481
++ LR +IG V+Q+ L SI +NI YG D + E+ A+ A A FI++
Sbjct: 409 RQLNPVWLRSKIGTVSQEPILFSCSIAENIAYGADDPSSVTAEEIQRVAEVANAVAFIRN 468
Query: 482 LTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQ 541
G++ VGE G+ LSGGQ+QRIAIAR +LKN ILLLDEATSALD+E E +Q
Sbjct: 469 FPQ-----GFNTVVGEKGVLLSGGQKQRIAIARALLKNPKILLLDEATSALDAENEYLVQ 523
Query: 542 KSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKK-NGLYSRLWRHQ 600
++L LM G+TV+ IAHRLSTI + + VLD G + E G H +LL K NG+Y +L Q
Sbjct: 524 EALDRLMDGRTVLVIAHRLSTIKNANMVAVLDQGKITEYGKHEELLSKPNGIYRKLMNKQ 583
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288;
multidrug transporter, transport protein; HET: ANP;
2.90A {Thermotoga maritima}
Length = 598
Score = 351 bits (904), Expect = e-114
Identities = 177/603 (29%), Positives = 300/603 (49%), Gaps = 60/603 (9%)
Query: 23 KLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIID-LLSNIKPSLLWKNYSS 81
+ +L + +++V F T++ L +GK ID + + LL +
Sbjct: 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRFDLLPR---- 78
Query: 82 YILLLGFILISSTVFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIA 141
Y+L+LG I +++ LQ + S + LR + + FF G I
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTL-SQDVVFRLRKELFEKLQRVPVGFFDRTPHGDII 137
Query: 142 TKV----------MQTSIA--IRDIFVIIGDILVFITIYIVTILTIIGTFNVYMLFPFVI 189
++V + SI I + G ++ + + IL+++ + P +
Sbjct: 138 SRVINDVDNINNVLGNSIIQFFSGIVTLAG-AVIMM-FRVNVILSLV----TLSIVPLTV 191
Query: 190 WISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREANYARFA 249
I+ + + K + G I + + + +KLF+ E +F
Sbjct: 192 LITQIV------SSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTR--EEKEMEKFD 243
Query: 250 MI-DFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALF---LWTKGILGIGAVAAATA 305
+ + L+K+ + ++ S ++ L+ M+ LG + F L K I+ +G +A
Sbjct: 244 RVNESLRKVGTKAQIFSG--VLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIG 301
Query: 306 MSLRLNG-ISHWVMWEIAALFESIGTIQDGM-------NMLSKKYKIVDNYNAKRLVVTN 357
S + ++ E++ F IQ + +L + + D+ +A L
Sbjct: 302 YSRQFTRPLN-----ELSNQF---NMIQMALASAERIFEILDLE-EEKDDPDAVELREVR 352
Query: 358 GKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI 417
G+I FKNV FSYD+K ++ +++ I+PG+K+ LVG +G+GK+TI NLL+RFYD+ G+I
Sbjct: 353 GEIEFKNVWFSYDKKKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQI 412
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADI 477
L+DG +I + + SLR IG+V QDT L ++++N+ YG P A++ E+ AAK +D
Sbjct: 413 LVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDH 472
Query: 478 FIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
FIK L + GY+ + ++G LS GQRQ +AI R L N IL+LDEATS +D++ E
Sbjct: 473 FIKHLPE-----GYETVLTDNGEDLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTE 527
Query: 538 IAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLW 597
+IQ +++ LM+GKT I IAHRL+TI D +IVL +G + E G H +L++K G Y L+
Sbjct: 528 KSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHDELIQKRGFYYELF 587
Query: 598 RHQ 600
Q
Sbjct: 588 TSQ 590
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP;
2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Length = 271
Score = 336 bits (863), Expect = e-112
Identities = 86/249 (34%), Positives = 134/249 (53%), Gaps = 10/249 (4%)
Query: 357 NGKIFFKNVSFSYD--QKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
G + F++VSF+Y ++ L+ T+ PG+ LVG +G+GKST+ LL Y
Sbjct: 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTG 73
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD-ASECELFNAAKCA 473
G++L+DG+ + L Q+ V Q+ L RS R+NI YG + E+ A +
Sbjct: 74 GKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMES 133
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
A FI GYD VGE G +LSGGQRQ +A+AR +++ +L+LD ATSALD
Sbjct: 134 GAHDFISGFPQ-----GYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSALD 188
Query: 534 SEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNG 591
+ ++ +Q+ LY + +TV+ I +LS ++ L G V E+G+HL L+++ G
Sbjct: 189 AGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMERGG 248
Query: 592 LYSRLWRHQ 600
Y +
Sbjct: 249 CYRSMVEAL 257
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP,
cyclic peptide, membrane protein; 3.80A {Mus musculus}
PDB: 3g61_A* 3g60_A*
Length = 1284
Score = 363 bits (933), Expect = e-112
Identities = 163/589 (27%), Positives = 264/589 (44%), Gaps = 55/589 (9%)
Query: 40 LLVIFFTTLTGTF--EALLFAAMGKIIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFV 97
L+++ F +T +F + + + + L + ++Y I +
Sbjct: 66 LMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVA 125
Query: 98 GLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEFAGRIATKVMQTSIAIRDIFVI 157
+Q F + +G +R F I+NQ I +F G + T++ I +
Sbjct: 126 YIQVSF-WCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELNTRLTDDVSKINEG--- 181
Query: 158 IGDILVFITIYIVTILT--IIGTFN------VYMLFPFVIWISAYIYTLIYFIPRLNKTA 209
IGD + + T IIG V + V+ +SA I+ L+
Sbjct: 182 IGDKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWA-----KILSSFT 236
Query: 210 ESQATARSLMTGRITDAYANIMTVKLFSHAGREAN-YARFAMIDFLKKIYQQMRLISSFE 268
+ + A + + A I TV F +E Y ++ K++ + + ++
Sbjct: 237 DKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELERYNNN--LEEAKRLGIKKAITANI- 293
Query: 269 IINHLLAMLLILGTTGCALFLW------TKGILGIGAVAAATAMSLRLNGISHWVMWEIA 322
+ +L AL W IG V S+ + S +
Sbjct: 294 ----SMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLT-VFFSVLIGAFS------VG 342
Query: 323 ALFESIGTIQDGMNMLSKKYKIVD--------NYNAKRLVVTNGKIFFKNVSFSYD--QK 372
+I + + +KI+D + + + G + FKN+ FSY ++
Sbjct: 343 QASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKE 402
Query: 373 HLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESL 432
I+ L+L ++ G+ + LVG SG GKST L+ R YD G + IDGQ+I ++ L
Sbjct: 403 VQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYL 462
Query: 433 REQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYD 492
RE IG+V+Q+ L +I +NI YGR D + E+ A K A A FI L +D
Sbjct: 463 REIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMKLPH-----QFD 517
Query: 493 AHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKT 552
VGE G +LSGGQ+QRIAIAR +++N ILLLDEATSALD+E+E +Q +L +G+T
Sbjct: 518 TLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRT 577
Query: 553 VIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRLWRHQN 601
I IAHRLST+ D + D G + E+G+H +L+++ G+Y +L Q
Sbjct: 578 TIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREKGIYFKLVMTQT 626
Score = 359 bits (924), Expect = e-111
Identities = 166/613 (27%), Positives = 263/613 (42%), Gaps = 58/613 (9%)
Query: 18 KPPPYKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLWK 77
+ P ILK Y ++ IF + G + K++ + +N P +
Sbjct: 686 EDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQR 745
Query: 78 NYSSYILLLGFIL-ISSTVFVGLQTLFKHQVLSGNFPMLLRWNFHRLILNQSINFFQEEF 136
S+ LL IL I S + LQ LR+ + +L Q +++F +
Sbjct: 746 QNSNLFSLLFLILGIISFITFFLQGFTFG-KAGEILTKRLRYMVFKSMLRQDVSWFDDPK 804
Query: 137 --AGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTILT--IIG-------TFNVYMLF 185
G + T++ + ++ G L I I + T II T + +
Sbjct: 805 NTTGALTTRLANDAAQVKGA---TGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIV 861
Query: 186 PFVIWISAYIYTLIYFIPRLNKTAESQATARSLMTGRITDAYANIMTVKLFSHAGREAN- 244
P + I+ + + L+ A T+A N TV RE
Sbjct: 862 PIIA-IAGVVEMKM-----LSGQALKDKKELEGSGKIATEAIENFRTVVSL---TREQKF 912
Query: 245 YARFAMIDFLKKIYQQMR---LISSFEIINHLLAMLLILGTTGCALFLW------TKGIL 295
+A L+ Y+ + + + A T+ ++
Sbjct: 913 ETMYA--QSLQIPYRNAMKKAHVFGI-----TFSFTQAMMYFSYAAAFRFGAYLVTQQLM 965
Query: 296 GIGAV-AAATAMSLRLNGISHWVMW--EIAALFESIGTIQDGMNMLSKKYKI-VDNYNAK 351
V +A+ + + + A S I + ++ K +I +
Sbjct: 966 TFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHI---IRIIEKTPEIDSYSTQGL 1022
Query: 352 RLVVTNGKIFFKNVSFSYDQ--KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
+ + G + F V F+Y ++ LSL ++ G+ + LVG SG GKST+ LL RF
Sbjct: 1023 KPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERF 1082
Query: 410 YDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD--ASECELF 467
YD G + +DG+ I ++ + LR Q+G+V+Q+ L SI +NI YG S E+
Sbjct: 1083 YDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIV 1142
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
AAK A FI SL D Y+ VG+ G +LSGGQ+QRIAIAR +++ ILLLDE
Sbjct: 1143 RAAKEANIHQFIDSLPD-----KYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDE 1197
Query: 528 ATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLL 587
ATSALD+E+E +Q++L +G+T I IAHRLSTI D ++V+ NG V E G+H LL
Sbjct: 1198 ATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVKEHGTHQQLL 1257
Query: 588 KKNGLYSRLWRHQ 600
+ G+Y + Q
Sbjct: 1258 AQKGIYFSMVSVQ 1270
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 269 bits (690), Expect = 1e-82
Identities = 89/257 (34%), Positives = 146/257 (56%), Gaps = 6/257 (2%)
Query: 338 LSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSG 396
L++K I + NA L G + F+NV F Y + +++ ++ +++PG + ++G +G
Sbjct: 320 LNEKPAIEEADNALALPNVEGSVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETG 379
Query: 397 AGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILY 456
+GKST+ NL+ R D + G + +D ++ V + LR I V Q+T L +I++N+ +
Sbjct: 380 SGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKW 439
Query: 457 GRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516
GR DA++ E+ AAK A+ FI SL + GYD+ V G SGGQ+QR++IAR +
Sbjct: 440 GREDATDDEIVEAAKIAQIHDFIISLPE-----GYDSRVERGGRNFSGGQKQRLSIARAL 494
Query: 517 LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGC 576
+K +L+LD+ TS++D E I L KG T I ++ T D+++VL G
Sbjct: 495 VKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGK 554
Query: 577 VAEEGSHLDLLKKNGLY 593
VA G+H +LL+ Y
Sbjct: 555 VAGFGTHKELLEHCKPY 571
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance
regulator, residues 1193-1427...; CFTR, ABC transporter,
nucleotide binding domain, NBD; HET: B44; 2.70A {Homo
sapiens}
Length = 390
Score = 220 bits (563), Expect = 2e-66
Identities = 68/254 (26%), Positives = 121/254 (47%), Gaps = 14/254 (5%)
Query: 356 TNGKIFFKNVSFSYDQKH-LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
+ G++ K+++ Y + I+ N+S +I PG+++GL+GR+G+GKST+ + LR + +
Sbjct: 16 SGGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 74
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNI--LYGRPDASECELFNAAKC 472
GEI IDG + +++ E R+ G++ Q + + R N+ D E++ A
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQ---EIWKVADE 131
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
I+ D + + G LS G +Q + +AR +L A ILLLDE ++ L
Sbjct: 132 VGLRSVIEQFP-----GKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHL 186
Query: 533 DSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNG- 591
D I+++L TVI R+ + D+ +V++ V + S L+L
Sbjct: 187 DPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPAD 246
Query: 592 -LYSRLWRHQNKNF 604
+ NF
Sbjct: 247 RFVAGFIGSPKMNF 260
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC
transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo
sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A
1ckz_A
Length = 229
Score = 155 bits (395), Expect = 5e-44
Identities = 60/251 (23%), Positives = 116/251 (46%), Gaps = 37/251 (14%)
Query: 356 TNGKIFFKNVSFSYDQKH-LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKY 414
T ++ +NV+ +++ ++ +++ I+ G+ + + G +GAGK+++ +++ +
Sbjct: 3 TTTEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAK--- 471
G+I G IS SQ S ++ +I++NI++G ++ +
Sbjct: 63 GKIKHSG-RISFCSQFSW------------IMPGTIKENIIFGVS-------YDEYRYRS 102
Query: 472 ----CA-EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
C E DI + + +GE GI LSGGQR RI++AR + K+A + LLD
Sbjct: 103 VIKACQLEEDI--SKFAE-----KDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLD 155
Query: 527 EATSALDSEAEIAI-QKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLD 585
LD E I + + LM KT I + ++ + D++++L G G+ +
Sbjct: 156 SPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSE 215
Query: 586 LLKKNGLYSRL 596
L +S
Sbjct: 216 LQNLQPDFSSK 226
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins,
MRP1/ABCC1, nucleotide-binding domain, ATP- binding,
hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Length = 237
Score = 148 bits (377), Expect = 2e-41
Identities = 69/250 (27%), Positives = 128/250 (51%), Gaps = 37/250 (14%)
Query: 358 GKIFFKNVSFSYDQKH-LIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
I +N +F++ + +N ++ +I G + +VG+ G GKS++ + LL D G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 417 ILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAA--KCA- 473
+ I G +++ V Q++ + + S+R+NIL+G E + + CA
Sbjct: 62 VAIKG-SVAYVPQQAW------------IQNDSLRENILFGCQ--LEEPYYRSVIQACAL 106
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
D+ + L G +GE G+ LSGGQ+QR+++AR + NA I L D+ SA+D
Sbjct: 107 LPDL--EILPS-----GDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 159
Query: 534 SEAEIAIQKSLYN-------LMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDL 586
+ + K ++ ++K KT I + H +S + +D +IV+ G ++E GS+ +L
Sbjct: 160 AH----VGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQEL 215
Query: 587 LKKNGLYSRL 596
L ++G ++
Sbjct: 216 LARDGAFAEF 225
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding
cassette, transport protein; HET: ATP; 2.05A {Homo
sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A*
1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A*
1xfa_A*
Length = 290
Score = 145 bits (368), Expect = 2e-39
Identities = 64/269 (23%), Positives = 116/269 (43%), Gaps = 40/269 (14%)
Query: 343 KIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTI 402
K N N ++ + + F N S ++ +++ I+ G+ + + G +GAGK+++
Sbjct: 24 KAKQNNNNRKTSNGDDSLSFSNFSLLGTP---VLKDINFKIERGQLLAVAGSTGAGKTSL 80
Query: 403 NNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDAS 462
+++ + G+I G IS SQ S ++ +I++NI+ G
Sbjct: 81 LMMIMGELEPSEGKIKHSG-RISFCSQNSW------------IMPGTIKENII-GVS--- 123
Query: 463 ECELFNAAK-------CA-EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIAR 514
++ + C E DI + D +GE GI LSGGQR RI++AR
Sbjct: 124 ----YDEYRYRSVIKACQLEEDISKFAEKDN-------IVLGEGGITLSGGQRARISLAR 172
Query: 515 VILKNAPILLLDEATSALDSEAEIAI-QKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLD 573
+ K+A + LLD LD E I + + LM KT I + ++ + D++++L
Sbjct: 173 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232
Query: 574 NGCVAEEGSHLDLLKKNGLYSRLWRHQNK 602
G G+ +L +S +
Sbjct: 233 EGSSYFYGTFSELQNLRPDFSSKLMGCDS 261
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET:
ATP; NMR {Saccharomyces cerevisiae}
Length = 608
Score = 140 bits (354), Expect = 2e-35
Identities = 51/251 (20%), Positives = 87/251 (34%), Gaps = 33/251 (13%)
Query: 334 GMNMLSKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVG 393
+ ++ + + L + F S Q ++N E + ++G
Sbjct: 326 NLRFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMG 385
Query: 394 RSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDT--SLLHRSIR 451
+G GK+T+ LL G+ + N+S Q +I T L + IR
Sbjct: 386 ENGTGKTTLIKLLAGALKPDEGQDIPKL-NVSMKPQ-----KIAPKFPGTVRQLFFKKIR 439
Query: 452 DNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIA 511
L + + I + D V LSGG+ QR+A
Sbjct: 440 GQFLNPQFQTDVVKPLR----------IDDI--------IDQEVQH----LSGGELQRVA 477
Query: 512 IARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DR 568
I + A I L+DE ++ LDSE I K + + KT + H + + D+
Sbjct: 478 IVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADK 537
Query: 569 LIVLDNGCVAE 579
+IV +
Sbjct: 538 VIVFEGIPSKN 548
Score = 128 bits (324), Expect = 1e-31
Identities = 51/253 (20%), Positives = 93/253 (36%), Gaps = 26/253 (10%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEI- 417
+V+ Y ++ L T +PG+ +GLVG +G GKST +L G
Sbjct: 77 TNLEAHVTHRYSANSFKLHRL-PTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFD 135
Query: 418 ----------LIDGQNISNVSQESLREQIGMV--TQDTSLLHRSIRDNILYGRPDASECE 465
G + N + L + I + Q + R+I+ + E
Sbjct: 136 DPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKV------GE 189
Query: 466 LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLL 525
L + + + + + LSGG+ QR AI ++ A + +
Sbjct: 190 LLKLRMEKSPEDVKRYIKILQLENVLKRDIEK----LSGGELQRFAIGMSCVQEADVYMF 245
Query: 526 DEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSH 583
DE +S LD + + + + +L+ K VI + H LS + + D + ++
Sbjct: 246 DEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVYGVVT 305
Query: 584 LDLLKKNGLYSRL 596
L + G+ L
Sbjct: 306 LPASVREGINIFL 318
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell
membrane, cobalt transport, hydrolase, ION transport;
2.30A {Clostridium perfringens atcc 13124}
Length = 275
Score = 133 bits (337), Expect = 2e-35
Identities = 66/255 (25%), Positives = 111/255 (43%), Gaps = 41/255 (16%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYDIKYG 415
+ + ++++Y + +++ I+ GE ++G +G GKST N +L G
Sbjct: 8 LKVEELNYNYSDGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILK----PSSG 63
Query: 416 EILIDGQNISNVSQE--SLREQIGMVTQ--DTSLLHRSIRDNILYGRPD---ASECELFN 468
IL D + I + LRE IG+V Q D L S+ ++ +G E E+
Sbjct: 64 RILFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVNMKLPEDEIRK 122
Query: 469 AAKCAEADIFIKSLTDE--HGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
A I+ L D+ H LS GQ++R+AIA V++ +L+LD
Sbjct: 123 RVDNALKRTGIEHLKDKPTH--------------CLSFGQKKRVAIAGVLVMEPKVLILD 168
Query: 527 EATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG-- 581
E T+ LD I K L + K G T+I H + + D + V+ G V +G
Sbjct: 169 EPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNP 228
Query: 582 ----SHLDLLKKNGL 592
+ ++++K L
Sbjct: 229 KEVFAEKEVIRKVNL 243
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural
genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Length = 263
Score = 132 bits (335), Expect = 3e-35
Identities = 48/240 (20%), Positives = 88/240 (36%), Gaps = 33/240 (13%)
Query: 360 IFFKNVSFSYDQKHL---IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
I KNV + K + N++L + GEK+ ++G +G+GK+T+ + G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLLPYS-GN 59
Query: 417 ILIDGQNISNVSQESLREQIGMVTQDTSL--LHRSIRDNILYGRPDASECELFNAAKCAE 474
I I+G + +R I T + ++ D + EL +
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYE------ELKGLDR-DL 107
Query: 475 ADIFIK--SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
+K L +E R+ KLS GQ + + + I+ LDE +
Sbjct: 108 FLEMLKALKLGEEILRRKLY--------KLSAGQSVLVRTSLALASQPEIVGLDEPFENV 159
Query: 533 DSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVL-DNGCVAEEGSHLDLLKKN 590
D+ I + + GK I + H L ++ + + S +LL+ +
Sbjct: 160 DAARRHVISRYIKEY--GKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESS 217
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I
ABC type importer, methionine uptake transporter,
membrane protein; HET: ADP; 2.90A {Escherichia coli}
PDB: 3tuj_C 3tuz_C* 3dhw_C
Length = 366
Score = 135 bits (341), Expect = 5e-35
Identities = 78/242 (32%), Positives = 124/242 (51%), Gaps = 30/242 (12%)
Query: 360 IFFKNVSFSYDQKHLII---NNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYDI 412
I N++ + Q I NN+SL + G+ G++G SGAGKST +N LL
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVN--LLERPT- 81
Query: 413 KYGEILIDGQNISNVSQESLRE---QIGMVTQDTSLLH-RSIRDNILYGRPDASECELFN 468
G +L+DGQ ++ +S+ L + QIGM+ Q +LL R++ N+ P EL N
Sbjct: 82 -EGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVAL--P----LELDN 134
Query: 469 AAKCAEADIFIKSLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
K E + L G D++ LSGGQ+QR+AIAR + N +LL D+
Sbjct: 135 TPK-DEVKRRVTELLSLVGLGDKHDSYPSN----LSGGQKQRVAIARALASNPKVLLCDQ 189
Query: 528 ATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHL 584
ATSALD +I + L ++ + G T++ I H + + + D + V+ NG + E+ +
Sbjct: 190 ATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVS 249
Query: 585 DL 586
++
Sbjct: 250 EV 251
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette,
hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Length = 279
Score = 128 bits (325), Expect = 9e-34
Identities = 55/244 (22%), Positives = 102/244 (41%), Gaps = 34/244 (13%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+ K I+ +S I G+K L G +GAGK+T+ N+L + G + + G
Sbjct: 24 LDQIGRMKQGKT-ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFG 82
Query: 422 QNISNV--SQESLREQIGMVTQDTSL---LHRSIRDNIL---------YGRPDASECELF 467
+ V S E++R+ IG V+ + D ++ Y D
Sbjct: 83 KMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNE- 141
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
A +K + ++G LS G++QR+ IAR ++ +L+LDE
Sbjct: 142 -------AHQLLKLVGMSAKA---QQYIGY----LSTGEKQRVMIARALMGQPQVLILDE 187
Query: 528 ATSALDSEAEIAIQKSLYNLM---KGKTVIAIAHRLSTI-SAMDRLIVLDNGCVAEEGSH 583
+ LD A ++ L +L +I + H + I + ++++L +G ++G+
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 584 LDLL 587
D+L
Sbjct: 248 EDIL 251
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase,
translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Length = 538
Score = 132 bits (333), Expect = 6e-33
Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 29/242 (11%)
Query: 354 VVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIK 413
+ + K K + + + GE IG++G +G GK+T +L+
Sbjct: 262 LSKDLKTKMKWTKIIKKLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITAD 321
Query: 414 YGEILIDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASE-CELFNAAKC 472
G + + Q +S Q G V Q L + +D + E + N
Sbjct: 322 EGSVTPEKQILSYKPQRIFPNYDGTVQQ---YLENASKDALSTSSWFFEEVTKRLN---- 374
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
+ L +++V + LSGG+ Q++ IA + K A + +LD+ +S L
Sbjct: 375 ------LHRL--------LESNVND----LSGGELQKLYIAATLAKEADLYVLDQPSSYL 416
Query: 533 DSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKK 589
D E + K++ + + I H LS + DR+IV + + K
Sbjct: 417 DVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476
Query: 590 NG 591
G
Sbjct: 477 TG 478
Score = 123 bits (312), Expect = 3e-30
Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 44/251 (17%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL-----RFYDIK---- 413
V Y + L T + +G++G++G GK+T+ +L F D
Sbjct: 3 GEVIHRYKVNGFKLFGLP-TPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVG 61
Query: 414 YGEIL--IDGQNISNVSQESLREQIGMVTQ----DTSLLHRSIRDNILYGRPDASE---- 463
E+L G+ I N +E ++ +V + + + N + + D
Sbjct: 62 KDEVLKRFRGKEIYNYFKELYSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERGKKDE 121
Query: 464 -CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI 522
EL N D LSGG QR+ +A +L+ A +
Sbjct: 122 VKELLNMTNLWNKDAN----------------------ILSGGGLQRLLVAASLLREADV 159
Query: 523 LLLDEATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
+ D+ +S LD + + K++ L+K K VI + H L + + D + ++
Sbjct: 160 YIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGR 219
Query: 582 SHLDLLKKNGL 592
+ G+
Sbjct: 220 VSKSYAARVGI 230
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane,
membrane, transmembrane, transport, ATP- binding,
hydrolase, nucleotide-binding, periplasm; HET: 1PE;
2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Length = 249
Score = 124 bits (314), Expect = 2e-32
Identities = 56/223 (25%), Positives = 91/223 (40%), Gaps = 36/223 (16%)
Query: 375 IINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLRE 434
+ LS ++ GE + LVG +GAGKST+ + K G I GQ + S L
Sbjct: 15 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLAL 73
Query: 435 QIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDA 493
++Q + + + + D + EL N L D+ GR +
Sbjct: 74 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDV-AGALA-----LDDKLGRS-TNQ 126
Query: 494 HVGEHGIKLSGGQRQRIAIARVILKNAP-------ILLLDEATSALDSEAEIAIQKSLYN 546
LSGG+ QR+ +A V+L+ P +LLLDE ++LD +A Q +L
Sbjct: 127 --------LSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD----VAQQSALDK 174
Query: 547 LMK-----GKTVIAIAHRLSTISAM--DRLIVLDNGCVAEEGS 582
++ G ++ +H L + R +L G + G
Sbjct: 175 ILSALSQQGLAIVMSSHDL-NHTLRHAHRAWLLKGGKMLASGR 216
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt
transport, TM02 hydrolase, inner membrane, membrane,
nucleotide-binding; 2.30A {Thermotoga maritima}
Length = 266
Score = 125 bits (315), Expect = 2e-32
Identities = 66/247 (26%), Positives = 109/247 (44%), Gaps = 36/247 (14%)
Query: 359 KIFFKNVSFSYDQ----KHLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFY 410
+I NVS + + + + N+SL I GE + + G +G+GKST + L+
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIE--- 58
Query: 411 DIKYGEILIDGQNISNVSQESLREQIGMVTQ--DTSLLHRSIRDNILYG----RPDASEC 464
G++L DG+ +R IG+ Q + + D + + PD
Sbjct: 59 -PTSGDVLYDGERKKG---YEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPV 114
Query: 465 ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524
L A + S D LSGG+++R+AIA VI+ IL+
Sbjct: 115 PLVKKA-MEFVGLDFDSFKDRV------PF------FLSGGEKRRVAIASVIVHEPDILI 161
Query: 525 LDEATSALDSEAEIAIQKSLYNL-MKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
LDE LD E + + + + GKTVI I+H + T+ DR++VL+ G +G+
Sbjct: 162 LDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
Query: 583 HLDLLKK 589
++ L+K
Sbjct: 222 RMEFLEK 228
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis,
hydrolyase/translation complex; HET: ADP; 1.90A
{Pyrococcus furiosus}
Length = 538
Score = 127 bits (321), Expect = 2e-31
Identities = 63/258 (24%), Positives = 108/258 (41%), Gaps = 47/258 (18%)
Query: 335 MNMLSKKYKIVDNYNAKRLVVTNGKIF-FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVG 393
N+ + Y+I +R+ + + + + Y L I+ GE IG+VG
Sbjct: 262 ENVRFRPYEIKFTKTGERVEIERETLVTYPRLVKDYGSFRL--EVEPGEIKKGEVIGIVG 319
Query: 394 RSGAGKSTINNLLLRFYDIKYGEILIDG------QNISNVSQESLREQIGMVTQDTSLLH 447
+G GK+T +L + G+I D Q I + ++ E LL
Sbjct: 320 PNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADYEGTVYE----------LLS 369
Query: 448 RSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGY-DAHVGEHGIKLSGGQ 506
+ + ++ + L G D V E LSGG+
Sbjct: 370 KIDASKL-------------------NSNFYKTELLKPLGIIDLYDREVNE----LSGGE 406
Query: 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTIS 564
QR+AIA +L++A I LLDE ++ LD E +A+ +++ +LM+ KT + + H + I
Sbjct: 407 LQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMID 466
Query: 565 AM-DRLIVLDNGCVAEEG 581
+ DRL+V + G + G
Sbjct: 467 YVSDRLMVFE-GEPGKYG 483
Score = 118 bits (299), Expect = 1e-28
Identities = 47/238 (19%), Positives = 91/238 (38%), Gaps = 43/238 (18%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL-----RFYD-IKYGE 416
++ Y ++ L ++ G +G+VG +G GKST +L +
Sbjct: 25 EDCVHRYGVNAFVLYRL-PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 417 ILIDGQNISNVS--QESLRE-QIGMVTQD--TSLLHRSIRDNILYGRPDASE-------C 464
+I + + E L+ +I V + L+ ++++ ++ A E
Sbjct: 84 GVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETGKLEEVV 143
Query: 465 ELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILL 524
+ E +I LSGG+ QR+AIA +L+NA
Sbjct: 144 KALELENVLEREIQ----------------------HLSGGELQRVAIAAALLRNATFYF 181
Query: 525 LDEATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEE 580
DE +S LD + +++ L + GK+V+ + H L+ + + D + V+
Sbjct: 182 FDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGEPGVYG 239
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur
cluster, adenosine diphosphate, nucleotide-binding; HET:
ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Length = 607
Score = 127 bits (321), Expect = 3e-31
Identities = 47/223 (21%), Positives = 91/223 (40%), Gaps = 29/223 (13%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR-----FYDIKY-GE 416
++ Y ++ L ++ G +G+VG +G GK+T +L + +
Sbjct: 95 EDCVHRYGVNAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 417 ILIDGQNISNVSQ--ESLRE-QIGMV--TQDTSLLHRSIRDNILYGRPDASECELFNAAK 471
+I + + E L+ +I V Q LL ++++ + K
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVREL-----------LKK 202
Query: 472 CAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSA 531
E F + + + D + + LSGG+ QR+AIA +L+ A DE +S
Sbjct: 203 VDEVGKFEEVVKELELENVLDRELHQ----LSGGELQRVAIAAALLRKAHFYFFDEPSSY 258
Query: 532 LDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVL 572
LD + + + + L GK V+ + H L+ + + D + V+
Sbjct: 259 LDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301
Score = 127 bits (321), Expect = 4e-31
Identities = 59/226 (26%), Positives = 99/226 (43%), Gaps = 34/226 (15%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ + + Y L I+ GE IG+VG +G GK+T +L + G++
Sbjct: 358 VEYPRLVKDYGSFKL--EVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW 415
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFI 479
D ++ Q E G V + LL + + ++ +
Sbjct: 416 DLT-VAYKPQYIKAEYEGTVYE---LLSKIDSSKL-------------------NSNFYK 452
Query: 480 KSLTDEHGRKGY-DAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
L G D +V + LSGG+ QR+AIA +L++A I LLDE ++ LD E +
Sbjct: 453 TELLKPLGIIDLYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRL 508
Query: 539 AIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEG 581
A+ +++ +LM+ KT + + H + I + DRLIV + G G
Sbjct: 509 AVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFE-GEPGRHG 553
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative
iron chelatin ABC transporter, nucleotide binding
domain; 2.40A {Haemophilus influenzae}
Length = 253
Score = 116 bits (293), Expect = 1e-29
Identities = 57/225 (25%), Positives = 104/225 (46%), Gaps = 31/225 (13%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+N+ F Y ++ + L+ + G+ + ++G++G GKST+ +LLL + G+I +
Sbjct: 8 ENLGFYYQAENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQS 67
Query: 423 NISNVSQESLREQIGMVTQDTSLLHR-SIRDNILYGRPDASECELFNAAKCAEADIFIKS 481
IG V Q S S+ D +L GR ++ F K + + +++
Sbjct: 68 -------------IGFVPQFFSSPFAYSVLDIVLMGR--STHINTFAKPKSHDYQVAMQA 112
Query: 482 L----TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAE 537
L ++ + + LSGGQRQ I IAR I ++LLDE TSALD +
Sbjct: 113 LDYLNLTHLAKREFTS--------LSGGQRQLILIARAIASECKLILLDEPTSALDLANQ 164
Query: 538 IAIQKSLYNLMK--GKTVIAIAHRLSTISAM-DRLIVLDNGCVAE 579
+ L +L + TV+ H+ + + A+ ++ ++L+
Sbjct: 165 DIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF 209
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta
motif, beta sandwich, ligand binding protein; 1.90A
{Alicyclobacillus acidocaldarius}
Length = 355
Score = 116 bits (294), Expect = 8e-29
Identities = 63/243 (25%), Positives = 113/243 (46%), Gaps = 48/243 (19%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKYG 415
I F V Y + +S I+ GE +GL+G SG+GK+T +LR G
Sbjct: 15 IEFVGVEKIYPGGARSVRGVSFQIREGEMVGLLGPSGSGKTT----ILRLIAGLERPTKG 70
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECELFNAA 470
++ I G+ ++++ + + +G+V Q+ +L H ++ DN+ +G R E + A
Sbjct: 71 DVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMD----A 124
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+ E F++ L R + +LSGGQ+QR+A+AR + +LL DE +
Sbjct: 125 RVRELLRFMR-LESYANRFPH---------ELSGGQQQRVALARALAPRPQVLLFDEPFA 174
Query: 531 ALDS------EAEI-AIQKSLYNLMKGKTVIAIAH----RLSTISAMDRLIVLDNGCVAE 579
A+D+ + + + G T + + H L ++ DR++VL G V +
Sbjct: 175 AIDTQIRRELRTFVRQVHDEM-----GVTSVFVTHDQEEAL-EVA--DRVLVLHEGNVEQ 226
Query: 580 EGS 582
G+
Sbjct: 227 FGT 229
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET:
ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A*
2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Length = 263
Score = 113 bits (284), Expect = 2e-28
Identities = 72/246 (29%), Positives = 114/246 (46%), Gaps = 51/246 (20%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYDIKYG 415
I + S+ ++ +++ I+ GE + ++G SG+GKST +N L D G
Sbjct: 25 IDVHQLKKSFGSLE-VLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLL----EDFDEG 79
Query: 416 EILIDGQNISN--VSQESLREQIGMVTQDTSLL-HRSIRDNI------LYGRPDASECEL 466
EI+IDG N+ + +RE++GMV Q +L H ++ +NI + P
Sbjct: 80 EIIIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPRE----- 134
Query: 467 FNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLD 526
+A+ L D + G + LSGGQ QR+AIAR + I+L D
Sbjct: 135 -------KAEAKAMELLD---KVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFD 184
Query: 527 EATSALDSEAEIAIQKSLYNLMK-----GKTVIAIAH-----RLSTISAMDRLIVLDNGC 576
E TSALD E + + L ++MK G T++ + H R DR++ +D G
Sbjct: 185 EPTSALDPE---MVGEVL-SVMKQLANEGMTMVVVTHEMGFAR----EVGDRVLFMDGGY 236
Query: 577 VAEEGS 582
+ EEG
Sbjct: 237 IIEEGK 242
>1sgw_A Putative ABC transporter; structural genomics, P protein structure
initiative, southeast collaboratory for S genomics,
secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Length = 214
Score = 110 bits (277), Expect = 8e-28
Identities = 49/231 (21%), Positives = 100/231 (43%), Gaps = 36/231 (15%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
K+ +++S YD+ ++ +++TI+ G + G +G GK+T+ + + GEI+
Sbjct: 10 KLEIRDLSVGYDKP--VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEII 67
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSL-LHRSIRDNI-----LYGRPDASECELFNAAKC 472
+G I+ V + +I + ++ + S+ D + LYG +
Sbjct: 68 YNGVPITKV-----KGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKN-------EI 115
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
+A + + D + G +LS G +R+ +A +L NA I +LD+ A+
Sbjct: 116 MDA-LESVEVLDLKKKLG----------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAI 164
Query: 533 DSEAEIAIQKSLYNLMK--GKTVIAIAHRLSTISAMDRLIVLDNGCVAEEG 581
D +++ + KS+ ++K G +I+ LS D L +
Sbjct: 165 DEDSKHKVLKSILEILKEKGIVIISSREELSYC---DVNENLHKYSTKIDK 212
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase,
ATP-binding cassette, ATPase, transport protein; 1.45A
{Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB:
1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Length = 353
Score = 111 bits (280), Expect = 6e-27
Identities = 67/254 (26%), Positives = 116/254 (45%), Gaps = 54/254 (21%)
Query: 359 KIFFKNVSFSYDQ-KHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIK 413
+I KNVS + + K + ++N+++ I+ GE+ G++G SGAGK+T +R
Sbjct: 3 RIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTT----FMRIIAGLDVPS 58
Query: 414 YGEILIDGQNISNVSQESL----REQIGMVTQDTSLL-HRSIRDNILYG----RPDASEC 464
GE+ D + +++ + + R+ IGMV Q +L + + +NI + + E
Sbjct: 59 TGELYFDDRLVASNGKLIVPPEDRK-IGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEI 117
Query: 465 E--LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI 522
+ AK I + + LSG Q+QR+A+AR ++K+ +
Sbjct: 118 RKRVEEVAK-------ILDIHHVLNHFPRE---------LSGAQQQRVALARALVKDPSL 161
Query: 523 LLLDEATSALDSE------AEIA-IQKSLYNLMKGKTVIAIAHRLSTISAM---DRLIVL 572
LLLDE S LD+ A + +Q L G T++ ++H DR+ VL
Sbjct: 162 LLLDEPFSNLDARMRDSARALVKEVQSRL-----GVTLLVVSH--DPADIFAIADRVGVL 214
Query: 573 DNGCVAEEGSHLDL 586
G + + G DL
Sbjct: 215 VKGKLVQVGKPEDL 228
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein;
ATP-binding, nucleotide-binding, membrane,
transmembrane, transport protein; 3.00A {Methanosarcina
acetivorans} SCOP: b.40.6.3 c.37.1.12
Length = 348
Score = 108 bits (273), Expect = 4e-26
Identities = 61/240 (25%), Positives = 111/240 (46%), Gaps = 51/240 (21%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKYGEI 417
+++S + ++NLSL ++ GE ++G +GAGK+ L F+ G I
Sbjct: 4 IESLSRKWKN--FSLDNLSLKVESGEYFVILGPTGAGKTL----FLELIAGFHVPDSGRI 57
Query: 418 LIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECELFNAAKC 472
L+DG++++++S E + I V Q+ SL H +++ N+ +G + + +
Sbjct: 58 LLDGKDVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPK-------RV 108
Query: 473 AEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSAL 532
+ +K + R LSGG++QR+A+AR ++ N ILLLDE SAL
Sbjct: 109 LDTARDLK-IEHLLDRNPL---------TLSGGEQQRVALARALVTNPKILLLDEPLSAL 158
Query: 533 DS------EAEI-AIQKSLYNLMKGKTVIAIAHRLS---TISAMDRLIVLDNGCVAEEGS 582
D + + K TV+ I H + ++ DR+ V+ +G + + G
Sbjct: 159 DPRTQENAREMLSVLHKKN-----KLTVLHITHDQTEARIMA--DRIAVVMDGKLIQVGK 211
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding
domain, ABC motor domain, ferric iron transport, cell
inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Length = 359
Score = 108 bits (273), Expect = 5e-26
Identities = 61/245 (24%), Positives = 113/245 (46%), Gaps = 53/245 (21%)
Query: 362 FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKYGEI 417
++S S+ ++N++SL++ PGE + ++G SG GK+T LLR F GEI
Sbjct: 7 IGHLSKSFQN-TPVLNDISLSLDPGEILFIIGASGCGKTT----LLRCLAGFEQPDSGEI 61
Query: 418 LIDGQNISNVSQESLREQ--IGMVTQDTSLL-HRSIRDNILYG----RPDASECELFNAA 470
+ G+ I + + + +G + Q+ L H ++ NI YG + ++
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQE----RQ 117
Query: 471 KCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATS 530
+ +++ GR H +LSGGQ+QR A+AR + + ++LLDE S
Sbjct: 118 RIEAMLELTG-ISELAGRY---PH------ELSGGQQQRAALARALAPDPELILLDEPFS 167
Query: 531 ALDSE------AEI-AIQKSLYNLMKGKTVIAIAH------RLSTISAMDRLIVLDNGCV 577
ALD + ++ A ++ GK+ + ++H + + DR+ V+ G +
Sbjct: 168 ALDEQLRRQIREDMIAALRAN-----GKSAVFVSHDREEALQYA-----DRIAVMKQGRI 217
Query: 578 AEEGS 582
+ S
Sbjct: 218 LQTAS 222
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint
center for structural genomics, JCSG, protein structu
initiative, PSI; 2.10A {Thermotoga maritima} SCOP:
c.37.1.12
Length = 256
Score = 105 bits (265), Expect = 8e-26
Identities = 51/240 (21%), Positives = 102/240 (42%), Gaps = 25/240 (10%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
+ K++ K I+ +S I+ GE GL+G +GAGK+T ++ G + +
Sbjct: 16 VVVKDLRKRIG-KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTV 74
Query: 420 DGQNISNVSQESLREQIGMVTQDTSLLHR-SIRDNI-----LYGRPDASECELFNAAKCA 473
G+N+ E +R+ I + ++ + + Y + +
Sbjct: 75 FGKNVVEEPHE-VRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSS------EIEEMV 127
Query: 474 EADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALD 533
E I L ++ + V S G +++ IAR ++ N + +LDE TS LD
Sbjct: 128 ERATEIAGLGEKIKDR-----VS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLD 178
Query: 534 SEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGSHLDLLKKNG 591
++K L + G T++ +H + + + DR+ ++ NG + E G+ +L ++
Sbjct: 179 VLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERYK 238
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane
protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Length = 240
Score = 103 bits (258), Expect = 5e-25
Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 36/230 (15%)
Query: 364 NVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQN 423
L N+ + + L+G +GAGKS L+ GE+ ++G +
Sbjct: 6 RAEKRLGNFRL---NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGAD 61
Query: 424 ISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYGRPDASECELFNAAKCAEADIFIKSL 482
I+ + E R IG V QD +L H S+ NI YG + E + E + +
Sbjct: 62 ITPLPPE--RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVER--DRRVREMAEKLG-I 116
Query: 483 TDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDS------EA 536
RK +LSGG+RQR+A+AR ++ +LLLDE SA+D
Sbjct: 117 AHLLDRKPA---------RLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLME 167
Query: 537 EI-AIQKSLYNLMKGKTVIAIAHRLS---TISAMDRLIVLDNGCVAEEGS 582
E+ +Q+ ++ + H L ++ D + V+ NG + E+G
Sbjct: 168 ELRFVQREF-----DVPILHVTHDLIEAAMLA--DEVAVMLNGRIVEKGK 210
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein;
structural genomics; 1.70A {Aquifex aeolicus} PDB:
2pcl_A
Length = 224
Score = 101 bits (255), Expect = 9e-25
Identities = 51/240 (21%), Positives = 100/240 (41%), Gaps = 43/240 (17%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLL--LRFYDI-KYGE 416
+ +N+ I+ +SL+++ GE + ++G SG+GKST+ +L L D G+
Sbjct: 5 LRAENIKKVIRGYE-ILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLL---DAPTEGK 60
Query: 417 ILIDGQNISNVSQESL----REQIGMVTQDTSLLHR-SIRDNI----LYGRPDASECELF 467
+ ++G+ + +++ L ++G V Q L+ + +N+ L E +
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAK-- 118
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVG-EHGIK-----LSGGQRQRIAIARVILKNAP 521
+ L++ +G + LSGG++QR+AIAR +
Sbjct: 119 --ERGEYL------LSE----------LGLGDKLSRKPYELSGGEQQRVAIARALANEPI 160
Query: 522 ILLLDEATSALDSEAEIAIQKSLYNL-MKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEE 580
+L DE T LDS + + G +++ + H R + + +G V E
Sbjct: 161 LLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGE 220
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP;
1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Length = 262
Score = 102 bits (257), Expect = 1e-24
Identities = 70/268 (26%), Positives = 111/268 (41%), Gaps = 75/268 (27%)
Query: 356 TNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKST----INNLLLRFYD 411
+ K+ ++ Y ++ +SL + G+ I ++G SG+GKST IN L
Sbjct: 3 SENKLHVIDLHKRYGGHE-VLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFL----EK 57
Query: 412 IKYGEILIDGQNISNVSQES-------------LREQIGMVTQDTSLL-HRSIRDNI--- 454
G I+++GQNI+ V + LR ++ MV Q +L H ++ +N+
Sbjct: 58 PSEGAIIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEA 117
Query: 455 ---LYGRPDASECELFNAAKCAEADIFIKSLTD-----EHGRKGYDAHVGEHGIKLSGGQ 506
+ G A + A E + Y H LSGGQ
Sbjct: 118 PIQVLGLSKHD------ARERALK------YLAKVGIDERAQGKYPVH-------LSGGQ 158
Query: 507 RQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-----GKTVIAIAHRLS 561
+QR++IAR + +LL DE TSALD E + + L +M+ GKT++ + H
Sbjct: 159 QQRVSIARALAMEPDVLLFDEPTSALDPE---LVGEVL-RIMQQLAEEGKTMVVVTHE-- 212
Query: 562 TISAM-------DRLIVLDNGCVAEEGS 582
M +I L G + EEG
Sbjct: 213 ----MGFARHVSSHVIFLHQGKIEEEGD 236
>3tif_A Uncharacterized ABC transporter ATP-binding prote;
nucleotide-binding domain, ABC transporter ATPase; HET:
ADP; 1.80A {Methanocaldococcus jannaschii dsm
2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Length = 235
Score = 98.4 bits (246), Expect = 2e-23
Identities = 74/241 (30%), Positives = 119/241 (49%), Gaps = 36/241 (14%)
Query: 360 IFFKNVSFSY---DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLL--LRFYDI-K 413
+ KNV+ +Y ++ + N++L I+ GE + ++G SG+GKST+ N++ L D
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCL---DKPT 58
Query: 414 YGEILIDGQNISNVSQESL----REQIGMVTQDTSLLHR-SIRDN-----ILYGRPDASE 463
GE+ ID +++ + L R++IG V Q +L+ + +N I R S
Sbjct: 59 EGEVYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSG 118
Query: 464 CELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHG-IKLSGGQRQRIAIARVILKNAPI 522
E A + L + H +LSGGQ+QR+AIAR + N PI
Sbjct: 119 EERRKRAL--------ECLK----MAELEERFANHKPNQLSGGQQQRVAIARALANNPPI 166
Query: 523 LLLDEATSALDSE--AEI-AIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAE 579
+L D+ T ALDS+ +I + K L N GKTV+ + H ++ +R+I L +G V
Sbjct: 167 ILADQPTWALDSKTGEKIMQLLKKL-NEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
Query: 580 E 580
E
Sbjct: 226 E 226
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding
protein; structural genomics, NPPSFA; 1.94A {Pyrococcus
horikoshii}
Length = 362
Score = 97.7 bits (244), Expect = 3e-22
Identities = 68/249 (27%), Positives = 117/249 (46%), Gaps = 51/249 (20%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKY 414
+I +N+ + +NN++L I+ GE + L+G SG+GKST LL Y
Sbjct: 3 EIKLENIVKKFG-NFTALNNINLKIKDGEFMALLGPSGSGKST----LLYTIAGIYKPTS 57
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECE--LF 467
G+I D ++++ + + R +G+V Q+ +L H ++ NI + + E + +
Sbjct: 58 GKIYFDEKDVTELPPKD-RN-VGLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVR 115
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
AK + + R + LSGGQ+QR+AIAR ++K +LLLDE
Sbjct: 116 EVAK-------MLHIDKLLNRYPWQ---------LSGGQQQRVAIARALVKEPEVLLLDE 159
Query: 528 ATSALDSE------AEIA-IQKSLYNLMKGKTVIAIAHRLSTISAM---DRLIVLDNGCV 577
S LD+ AE+ +QK L G T + + H A+ DR+ V+ G +
Sbjct: 160 PLSNLDALLRLEVRAELKRLQKEL-----GITTVYVTH--DQAEALAMADRIAVIREGEI 212
Query: 578 AEEGSHLDL 586
+ G+ ++
Sbjct: 213 LQVGTPDEV 221
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha
and beta proteins (A/B) TM0421, structural genomics,
NPPSFA; 2.11A {Thermotoga maritima}
Length = 359
Score = 96.9 bits (242), Expect = 5e-22
Identities = 67/249 (26%), Positives = 111/249 (44%), Gaps = 51/249 (20%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKY 414
I N+ + K ++ +S ++ GE + L+G SG GK+T L Y
Sbjct: 3 SIRVVNLKKYFG-KVKAVDGVSFEVKDGEFVALLGPSGCGKTT----TLLMLAGIYKPTS 57
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECE--LF 467
GEI D ++++ + RE +GMV Q+ +L H ++ +NI + R E E +
Sbjct: 58 GEIYFDDVLVNDIPPKY-RE-VGMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVV 115
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
A+ + + RK LSGGQ+QR+A+AR ++K +LL DE
Sbjct: 116 EIAR-------KLLIDNLLDRKPTQ---------LSGGQQQRVALARALVKQPKVLLFDE 159
Query: 528 ATSALDSE------AEIA-IQKSLYNLMKGKTVIAIAHRLSTISAM---DRLIVLDNGCV 577
S LD+ AEI +Q+ L G T + + H AM R+ V + G +
Sbjct: 160 PLSNLDANLRMIMRAEIKHLQQEL-----GITSVYVTH--DQAEAMTMASRIAVFNQGKL 212
Query: 578 AEEGSHLDL 586
+ G+ ++
Sbjct: 213 VQYGTPDEV 221
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active
transport, sugar uptake and regulation, transport
protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3
b.40.6.3 c.37.1.12 PDB: 1vci_A*
Length = 372
Score = 93.8 bits (234), Expect = 7e-21
Identities = 66/249 (26%), Positives = 116/249 (46%), Gaps = 51/249 (20%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKY 414
++ +N++ + +N L+LTI+ GE + L+G SG GK+T LR +
Sbjct: 11 EVKLENLTKRFGNFT-AVNKLNLTIKDGEFLVLLGPSGCGKTT----TLRMIAGLEEPTE 65
Query: 415 GEILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECE--LF 467
G I ++++ + + R I MV Q ++ H ++ +NI + + E + +
Sbjct: 66 GRIYFGDRDVTYLPPKD-RN-ISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 123
Query: 468 NAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDE 527
AA+ + + + R LSGGQRQR+A+AR I+ +LL+DE
Sbjct: 124 WAAE-------LLQIEELLNRYPAQ---------LSGGQRQRVAVARAIVVEPDVLLMDE 167
Query: 528 ATSALDSE------AEIA-IQKSLYNLMKGKTVIAIAHRLSTISAM---DRLIVLDNGCV 577
S LD++ AEI +Q+ L T I + H + AM DR+ V++ G +
Sbjct: 168 PLSNLDAKLRVAMRAEIKKLQQKL-----KVTTIYVTH--DQVEAMTMGDRIAVMNRGQL 220
Query: 578 AEEGSHLDL 586
+ GS ++
Sbjct: 221 LQIGSPTEV 229
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral
membrane protein, ATPase, ABC transporter, membrane
transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia
coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A*
3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Length = 381
Score = 92.6 bits (231), Expect = 2e-20
Identities = 71/248 (28%), Positives = 114/248 (45%), Gaps = 51/248 (20%)
Query: 360 IFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFY----DIKYG 415
+ +NV+ ++ + ++ +++L I GE + VG SG GKST LLR I G
Sbjct: 4 VQLQNVTKAWG-EVVVSKDINLDIHEGEFVVFVGPSGCGKST----LLRMIAGLETITSG 58
Query: 416 EILIDGQNISNVSQESLREQIGMVTQDTSLL-HRSIRDNILYG----RPDASECE--LFN 468
++ I + +++ +GMV Q +L H S+ +N+ +G +
Sbjct: 59 DLFIGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQ 116
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEA 528
A+ + L RK LSGGQRQR+AI R ++ + LLDE
Sbjct: 117 VAE-------VLQLAHLLDRKPKA---------LSGGQRQRVAIGRTLVAEPSVFLLDEP 160
Query: 529 TSALDSE------AEIA-IQKSLYNLMKGKTVIAIAHRLSTISAM---DRLIVLDNGCVA 578
S LD+ EI+ + K L G+T+I + H + AM D+++VLD G VA
Sbjct: 161 LSNLDAALRVQMRIEISRLHKRL-----GRTMIYVTH--DQVEAMTLADKIVVLDAGRVA 213
Query: 579 EEGSHLDL 586
+ G L+L
Sbjct: 214 QVGKPLEL 221
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport,
maltose uptake and regulation, sugar binding protein;
1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3
c.37.1.12 PDB: 2d62_A
Length = 372
Score = 91.9 bits (229), Expect = 3e-20
Identities = 65/253 (25%), Positives = 114/253 (45%), Gaps = 53/253 (20%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR----FYDIKY 414
+ +V + + + +SL ++ GE + L+G SG GK+T LR +
Sbjct: 3 GVRLVDVWKVFGEVT-AVREMSLEVKDGEFMILLGPSGCGKTT----TLRMIAGLEEPSR 57
Query: 415 GEILIDGQNISNVSQESLRE----QIGMVTQDTSLL-HRSIRDNILYG----RPDASECE 465
G+I I + +++ + I MV Q +L H ++ DNI + + E +
Sbjct: 58 GQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID 117
Query: 466 --LFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPIL 523
+ A+ + LT+ RK + LSGGQRQR+A+ R I++ +
Sbjct: 118 QRVREVAE-------LLGLTELLNRKPRE---------LSGGQRQRVALGRAIVRKPQVF 161
Query: 524 LLDEATSALDSE------AEIA-IQKSLYNLMKGKTVIAIAHRLSTISAM---DRLIVLD 573
L+DE S LD++ AE+ +Q+ L G T I + H + AM DR+ V++
Sbjct: 162 LMDEPLSNLDAKLRVRMRAELKKLQRQL-----GVTTIYVTH--DQVEAMTMGDRIAVMN 214
Query: 574 NGCVAEEGSHLDL 586
G + + GS ++
Sbjct: 215 RGVLQQVGSPDEV 227
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein
biosynthesis, nucleotide-binding, phosphorylation, RNA-
binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces
cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Length = 986
Score = 88.6 bits (219), Expect = 2e-18
Identities = 57/203 (28%), Positives = 84/203 (41%), Gaps = 37/203 (18%)
Query: 359 KIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+ S +Y K ++N L ++ + G+ G +G GKST L+R +
Sbjct: 435 DLCNCEFSLAYGAKI-LLNKTQLRLKRARRYGICGPNGCGKST----LMR--------AI 481
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLH--RSIRDNILYGRPDASECELFNAAKCAEAD 476
+GQ +QE R V D H S+ D + E K A D
Sbjct: 482 ANGQVDGFPTQEECR--TVYVEHDIDGTHSDTSVLDFV---------FESGVGTKEAIKD 530
Query: 477 IFIK-SLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSE 535
I+ TDE + LSGG + ++A+AR +L+NA ILLLDE T+ LD+
Sbjct: 531 KLIEFGFTDEM----IAMPISA----LSGGWKMKLALARAVLRNADILLLDEPTNHLDTV 582
Query: 536 AEIAIQKSLYNLMKGKTVIAIAH 558
+ L G T I I+H
Sbjct: 583 NVAWLVNYLNTC--GITSITISH 603
Score = 58.9 bits (142), Expect = 4e-09
Identities = 36/220 (16%), Positives = 71/220 (32%), Gaps = 25/220 (11%)
Query: 370 DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQ 429
D++ + N + E + + + I + R E N+
Sbjct: 770 DRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGM 829
Query: 430 ESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFIKSLTDEHGRK 489
+ + DN R + E A+ + RK
Sbjct: 830 K-----------SERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRK 878
Query: 490 GYDAHVGEHGI-----------KLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEI 538
+ H G+ LSGGQ+ ++ +A + +++LDE T+ LD ++
Sbjct: 879 EIEEHCSMLGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLG 938
Query: 539 AIQKSLYNLMKGKTVIAIAHRLSTISAM-DRLIVLDNGCV 577
A+ K+L VI I H + + + + +G +
Sbjct: 939 ALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDGRM 976
Score = 47.0 bits (111), Expect = 2e-05
Identities = 19/73 (26%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 363 KNVSFSY-DQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
N+ F Y I +++ +I ++G +GAGKST+ N+L GE+
Sbjct: 675 TNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT-H 733
Query: 422 QN--ISNVSQESL 432
+N I+ + Q +
Sbjct: 734 ENCRIAYIKQHAF 746
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding
protein; beta-core domain; HET: ADP; 1.60A
{Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB:
1gaj_A 1g9x_A*
Length = 257
Score = 80.6 bits (200), Expect = 3e-17
Identities = 52/216 (24%), Positives = 96/216 (44%), Gaps = 11/216 (5%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQ 435
++ +S+++ G+ ++G +G+GKST+ N++ F G + + ++I+N L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHY 82
Query: 436 IGMV-T-QDTSLLHR-SIRDNILYGRPDASECELFNA----AKCAEADIFIKSLTDEHGR 488
G+V T Q L ++ +N+L G E L + E ++ K+
Sbjct: 83 -GIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAF-KILEF 140
Query: 489 KGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNL- 547
+LSGGQ + + I R ++ N ++++DE + + I + L
Sbjct: 141 LKLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELK 200
Query: 548 MKGKTVIAIAHRLSTISAM-DRLIVLDNGCVAEEGS 582
KG T + I HRL + D L V+ NG + EG
Sbjct: 201 AKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga
maritima} SCOP: c.37.1.12
Length = 240
Score = 65.2 bits (160), Expect = 5e-12
Identities = 50/243 (20%), Positives = 103/243 (42%), Gaps = 41/243 (16%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQ 422
+++ Y I + L + G+ + L+G +GAGK+T + + + G+I+ +GQ
Sbjct: 10 QSLHVYYG-AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQ 68
Query: 423 NISNVSQESL-REQIGMVTQDTSLLHR-SIRDNIL---YGRPDASECELFNAAKCAEA-D 476
+I+N + R I +V + + ++ +N++ Y R D
Sbjct: 69 DITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEG----IKRDLEWIFS 124
Query: 477 IFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
+F + G LSGG++Q +AI R ++ +L++DE + L A
Sbjct: 125 LFPRLKERLKQLGGT----------LSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---A 171
Query: 537 EIAIQKSLYNLMK-----GKTVI------AIAHRLSTISAMDRLIVLDNGCVAEEGSHLD 585
I + + ++ +++ G T++ A +++ VL+ G + EG +
Sbjct: 172 PILVSE-VFEVIQKINQEGTTILLVEQNALGALKVA-----HYGYVLETGQIVLEGKASE 225
Query: 586 LLK 588
LL
Sbjct: 226 LLD 228
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 57.9 bits (139), Expect = 8e-09
Identities = 71/427 (16%), Positives = 126/427 (29%), Gaps = 127/427 (29%)
Query: 220 TGRITDAYANIMTVKLFSHAGREANYARFAMIDF-LKKIYQQMRLISSFEIINHLLAMLL 278
TG Y +I++V F E + +F K + + I S E I+H++
Sbjct: 11 TGEHQYQYKDILSV--F-----EDAFVD----NFDCKDVQDMPKSILSKEEIDHIIMSKD 59
Query: 279 ILGTTGCALFLWTKGILGIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNML 338
+ +G WT V LR+N ++M I Q M
Sbjct: 60 AV--SGTLRLFWTLLSKQEEMVQKFVEEVLRIN--YKFLMSPIKTE-----QRQPSMMT- 109
Query: 339 SKKYKIVDNYNAKRLVVTNGKIFFKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAG 398
Y +R + N F + S Q +L + L ++P + + + G G+G
Sbjct: 110 -------RMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG 162
Query: 399 KSTINNLLLRFYD-----------IKYG------EILIDGQNI-----SNVSQ------- 429
K+ + + Y + +L Q + N +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 430 -----ESLREQIGMVTQD----TSLLHRSIRDNILYGRPDASECELFNAAKCAEADIFI- 479
S++ ++ + + LL + N+ +A FN C I +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLL---VLLNVQ----NAKAWNAFN-LSCK---ILLT 271
Query: 480 ---KSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEA 536
K +TD LS I + ++ L DE S L
Sbjct: 272 TRFKQVTD----------------FLSAATTTHI----SLDHHSMTLTPDEVKSLLLKYL 311
Query: 537 EIAIQKSLYNLMKGKTVIAIAHRLSTISAMDRLIVLDNGCVAEEGSHLDLLKKNGLYSRL 596
+ Q L + + S I+ R + + D
Sbjct: 312 DCRPQD-LPREVLTTNPRRL----SIIAESIR----------DGLATWD-------N--- 346
Query: 597 WRHQNKN 603
W+H N +
Sbjct: 347 WKHVNCD 353
Score = 47.5 bits (112), Expect = 1e-05
Identities = 78/548 (14%), Positives = 161/548 (29%), Gaps = 167/548 (30%)
Query: 1 MYKIFEKILYPFPNILIKPPPY-----KLISFILKCIYGVRKYILLVIFFTTLTGTFEAL 55
M +++ + N Y + + + + +R ++I G
Sbjct: 108 MTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID-----G----- 157
Query: 56 LFAAM---GK---IIDLLSNIKPSLLWKNYSSYILLLGFILISSTVFVGLQTLFKHQV-- 107
+ GK +D+ + K ++ + L L TV LQ L +Q+
Sbjct: 158 ----VLGSGKTWVALDVCLSYKV-QCKMDFKIFWLNLKNCNSPETVLEMLQKLL-YQIDP 211
Query: 108 -------LSGNFPM-----------LLRWNFHR---LIL-----NQSINFFQEEFAGRIA 141
S N + LL+ + L+L ++ N F ++
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN------LS 265
Query: 142 TKVMQTSIAIRDIFVIIGDILVFITIYIVTILTIIGTFNV-YMLFPFVIWISAYIYTLIY 200
K++ T+ R V D L T +++ T + + ++ L
Sbjct: 266 CKILLTT---RFKQVT--DFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-- 318
Query: 201 FIPRLNKTAESQAT---ARSLMTGRIT---------DAYANIM--TVKLFSHAGREANYA 246
PR T + A S+ G T D I+ ++ + A +
Sbjct: 319 --PREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFD 376
Query: 247 RFAM--------IDFLKKIYQQMRLISSFEIINHLLAMLLILGTTGCALFLWTKGILGIG 298
R ++ L I+ + ++N L L+ K
Sbjct: 377 RLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--------QPKE----- 423
Query: 299 AVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLVVTNG 358
++ + I E ++ N + IVD+YN + ++
Sbjct: 424 -------STISIPSI----------YLELKVKLE---NEYALHRSIVDHYNIPKTFDSDD 463
Query: 359 --KIFFKNVSFSYDQKHLIINNLSLTIQPGE-----------------KIGLVGRSGAGK 399
+ +S+ HL I+ E KI +
Sbjct: 464 LIPPYLDQYFYSHIGHHLK------NIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNAS 517
Query: 400 STINNLL--LRFY-------DIKYGEILID-GQNISNVSQESLRE------QIGMVTQDT 443
+I N L L+FY D KY ++ + + + + +I ++ +D
Sbjct: 518 GSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDE 577
Query: 444 SLLHRSIR 451
++ + +
Sbjct: 578 AIFEEAHK 585
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.8 bits (139), Expect = 9e-09
Identities = 112/609 (18%), Positives = 177/609 (29%), Gaps = 214/609 (35%)
Query: 26 SFILKCIYGVRKYILLV-----IFFTTLTGTFEALLFAAMGKII---DLLSNIKPSLLWK 77
L +G +++LLV + L F +L + + + L
Sbjct: 8 PLTLS--HGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADDEPTTPAE---LVG 62
Query: 78 NYSSYILLLGFILISSTVFVGLQTLFKHQVLSGNFPMLLRWNFHRLIL-NQSINFFQEEF 136
+ LG++ SS V F QVL+ L F L I+ +
Sbjct: 63 KF------LGYV--SSLVEPSKVGQFD-QVLN-----LCLTEFENCYLEGNDIHALAAKL 108
Query: 137 AGRIATKVMQTSIAIRDIFVIIGDILVFITIYIVTIL---TIIGTFNVYMLF-------- 185
T +++T I++ + L G + +F
Sbjct: 109 LQENDTTLVKTKELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQGNTDD 168
Query: 186 PF----VIWISAY---IYTLIYFI-PRLNKTAESQATARSLMTGRITDAYANIMTVKLFS 237
F ++ Y + LI F L++ + A K+F+
Sbjct: 169 YFEELRDLY-QTYHVLVGDLIKFSAETLSELIRTTLDAE-----------------KVFT 210
Query: 238 HAGREANYARFAMIDFLKK-------IYQQMRLIS---SFEIIN-----HLLAMLLILGT 282
++++L+ Y L+S S +I H + +LG
Sbjct: 211 QG--------LNILEWLENPSNTPDKDY----LLSIPISCPLIGVIQLAHYVVTAKLLGF 258
Query: 283 TGCALFLWTKGILGIGA---VAAATAMSLRLNGISHWVMWE---------IAALFESIG- 329
T L + KG G A A A + S WE I LF IG
Sbjct: 259 TPGELRSYLKGATGHSQGLVTAVAIAETD-----S----WESFFVSVRKAITVLF-FIGV 308
Query: 330 --------------TIQDGMN--------MLSKKYKIVDNYNAKRLVVTNGKIFFKNVSF 367
++D + MLS + N +++
Sbjct: 309 RCYEAYPNTSLPPSILEDSLENNEGVPSPMLS-----ISNLTQEQV-------------- 349
Query: 368 SYDQKHLIINNLSLTIQPGEK---IGLV-GR-----SGAGKSTIN-NLLLRFYDIKYGEI 417
Q ++ N L P K I LV G SG +S NL LR K
Sbjct: 350 ---QDYVNKTNSHL---PAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR--KAKAP-- 399
Query: 418 LIDGQNISNV--SQESLREQIGM----VTQ--DTSLLHRSIRDNILYGRPDASECEL-FN 468
G + S + S+ L+ V + LL D I D + + FN
Sbjct: 400 --SGLDQSRIPFSERKLK--FSNRFLPVASPFHSHLL-VPASDLIN---KDLVKNNVSFN 451
Query: 469 AAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSGGQRQRIAIARVILKNAPI----LL 524
A I + YD G LSG +R I I++ P+
Sbjct: 452 AKDIQ---IPV-----------YDTFDGSDLRVLSGSISER--IVDCIIR-LPVKWETTT 494
Query: 525 LDEATSALD 533
+AT LD
Sbjct: 495 QFKATHILD 503
Score = 41.6 bits (97), Expect = 0.001
Identities = 44/228 (19%), Positives = 68/228 (29%), Gaps = 90/228 (39%)
Query: 222 RITDAYANIMTVKLFSHAGREANYARFAMIDFLKKIYQQMRLISSFEIINHLL------- 274
RI + Y+ M + G+ F I+ Y +F LL
Sbjct: 1683 RIRENYSA-MIFETIV-DGKLKTEKIFKEINEHSTSY-------TFRSEKGLLSATQFTQ 1733
Query: 275 -AMLLILGTTGCALF--LWTKGI-----------LG-IGA-VAAATAMSL----RL---- 310
A+ A F L +KG+ LG A + A MS+ +
Sbjct: 1734 PALT----LMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYR 1789
Query: 311 ------------NGISHWVM-----WEIAALFESIGTIQDGMNMLSKKYK----IVDNYN 349
G S++ M +AA F +Q + + K+ IV NYN
Sbjct: 1790 GMTMQVAVPRDELGRSNYGMIAINPGRVAASFSQE-ALQYVVERVGKRTGWLVEIV-NYN 1847
Query: 350 AK-RLVVTNGKI-----------FFK---------NVSFSYDQ--KHL 374
+ + V G + F K S S ++ HL
Sbjct: 1848 VENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold,
coiled-coils, ATP binding, DNA bindi MRE11, replication;
HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A*
1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Length = 339
Score = 55.1 bits (132), Expect = 3e-08
Identities = 29/167 (17%), Positives = 53/167 (31%), Gaps = 14/167 (8%)
Query: 419 IDGQNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPDASECELFNAAKCAEADIF 478
+D + L+ G + + + E L + +
Sbjct: 163 LDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIGE--LASEIFAEFTEGK 220
Query: 479 IKSLTDEHGRKGYDAHVGEHGIK-----LSGGQRQ------RIAIARVILKNAPILLLDE 527
+ V G + LSGG+R R+A++ + +L+LDE
Sbjct: 221 YSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDE 280
Query: 528 ATSALDSEAEIAIQKSLYNLMK-GKTVIAIAHRLSTISAMDRLIVLD 573
T LD E + + +K VI ++H A D +I +
Sbjct: 281 PTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRIS 327
>1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication;
1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B*
1us8_B*
Length = 148
Score = 50.5 bits (121), Expect = 1e-07
Identities = 21/76 (27%), Positives = 33/76 (43%), Gaps = 7/76 (9%)
Query: 502 LSGGQRQRIAIA------RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLM-KGKTVI 554
LSGG+R + +A + +L+LDE T LD E + + + K VI
Sbjct: 58 LSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVI 117
Query: 555 AIAHRLSTISAMDRLI 570
++H A D +I
Sbjct: 118 LVSHDEELKDAADHVI 133
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural
genomics/proteomics initiative, RSGI, structural
genomics, binding; 1.70A {Thermus thermophilus} PDB:
2d2f_A*
Length = 250
Score = 47.9 bits (115), Expect = 3e-06
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL--RFYDIKYGEILID 420
+++ S D + I+ ++L + GE L+G +GAGKST+ +L Y ++ GEIL+D
Sbjct: 7 RDLWASIDGET-ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLD 65
Query: 421 GQNISNVSQE 430
G+NI +S +
Sbjct: 66 GENILELSPD 75
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster,
ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding;
HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Length = 267
Score = 47.9 bits (115), Expect = 3e-06
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 3/70 (4%)
Query: 363 KNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL--RFYDIKYGEILID 420
K++ S + K I+ LSL + PGE ++G +G+GKST++ L Y++ G +
Sbjct: 24 KDLHVSVEDKA-ILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFK 82
Query: 421 GQNISNVSQE 430
G+++ +S E
Sbjct: 83 GKDLLALSPE 92
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC
transporter ATPase domain-like; HET: DNA ADP; 2.70A
{Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Length = 371
Score = 45.6 bits (108), Expect = 3e-05
Identities = 17/76 (22%), Positives = 30/76 (39%), Gaps = 7/76 (9%)
Query: 502 LSGGQRQRIAIA-------RVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTVI 554
LSGG++ +A++ +I ++LDE T LD + + + +I
Sbjct: 281 LSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMI 340
Query: 555 AIAHRLSTISAMDRLI 570
I H D +I
Sbjct: 341 IITHHRELEDVADVII 356
>3kta_B Chromosome segregation protein SMC; structural maintenance of
chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A,
transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB:
1xew_Y 1xex_B*
Length = 173
Score = 43.4 bits (103), Expect = 5e-05
Identities = 21/74 (28%), Positives = 34/74 (45%), Gaps = 6/74 (8%)
Query: 502 LSGGQRQRIAIARVI----LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKT-VIAI 556
+SGG++ A+A V K AP L DE + LD +A + L ++ I I
Sbjct: 65 MSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLD-DANVKRVADLIKESSKESQFIVI 123
Query: 557 AHRLSTISAMDRLI 570
R ++ D++I
Sbjct: 124 TLRDVMMANADKII 137
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga
maritima} PDB: 3qg5_A 3tho_A*
Length = 365
Score = 36.8 bits (85), Expect = 0.015
Identities = 19/64 (29%), Positives = 30/64 (46%), Gaps = 7/64 (10%)
Query: 502 LSGGQR------QRIAIARVILKNAPILLLDEATSALDSEAEIAIQKSLYNLMK-GKTVI 554
LSGG+R +++A V +DE S+LD+E + I L L + K ++
Sbjct: 280 LSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIV 339
Query: 555 AIAH 558
I H
Sbjct: 340 FITH 343
>1e69_A Chromosome segregation SMC protein; structural maintenance of
chromosomes, coiled coil; 3.1A {Thermotoga maritima}
SCOP: c.37.1.12
Length = 322
Score = 36.9 bits (86), Expect = 0.017
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 6/73 (8%)
Query: 502 LSGGQRQRIAIARVI----LKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKT-VIAI 556
LSGG++ + +A + +K +P +LDE S LD + K L T I I
Sbjct: 220 LSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD-DYNAERFKRLLKENSKHTQFIVI 278
Query: 557 AHRLSTISAMDRL 569
H + A D L
Sbjct: 279 THNKIVMEAADLL 291
>1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome
segregation, cell adhesion, kleisin, MIT cell cycle;
HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP:
c.37.1.12
Length = 430
Score = 36.6 bits (85), Expect = 0.021
Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 7/75 (9%)
Query: 502 LSGGQRQRIAIARV----ILKNAPILLLDEATSALDSEAEIAIQKSLYNLMKGKTV--IA 555
LSGG++ A+A + + +P +LDE +ALD + + + + I
Sbjct: 334 LSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALD-ITNVQRIAAYIRRHRNPDLQFIV 392
Query: 556 IAHRLSTISAMDRLI 570
I+ + + D L+
Sbjct: 393 ISLKNTMFEKSDALV 407
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP;
1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A*
2j3e_A*
Length = 262
Score = 34.8 bits (80), Expect = 0.060
Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 388 KIGLVGRSGAGKS-TINNLL 406
+ ++G+ G GKS T+N+L+
Sbjct: 38 TVLVLGKGGVGKSSTVNSLI 57
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met
nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A
{Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A*
1m7h_A* 3cr7_A*
Length = 211
Score = 33.8 bits (78), Expect = 0.10
Identities = 16/43 (37%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 384 QPGEKIGLVGRSGAGKSTINNLLLR--FYDIKYGEILIDGQNI 424
Q G I L G S +GKST+ L D + +DG NI
Sbjct: 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 33.3 bits (77), Expect = 0.14
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Query: 384 QPGEKIGLVGRSGAGKSTINNLL-LRFYDIKYGEILIDGQNI 424
Q G I + G SG+GKST+ L Y ++DG N+
Sbjct: 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET:
GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Length = 270
Score = 33.4 bits (76), Expect = 0.15
Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Query: 388 KIGLVGRSGAGKS-TINNLL 406
I ++G+ G GKS T+N+++
Sbjct: 41 TILVMGKGGVGKSSTVNSII 60
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 32.9 bits (76), Expect = 0.15
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 391 LVGRSGAGKSTINNLL-LRFYDIKYGEILIDGQNI 424
L G SGAGK+T++ L +DG NI
Sbjct: 10 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 33.3 bits (77), Expect = 0.18
Identities = 8/27 (29%), Positives = 15/27 (55%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYGEI 417
+ G SG GKS++ N + ++ E+
Sbjct: 174 MAGLSGVGKSSLLNAINPGLKLRVSEV 200
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 32.4 bits (73), Expect = 0.22
Identities = 11/36 (30%), Positives = 13/36 (36%)
Query: 385 PGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420
I L G S AGKS I L + +D
Sbjct: 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 32.9 bits (76), Expect = 0.22
Identities = 9/27 (33%), Positives = 15/27 (55%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYGEI 417
G+SG GKS++ N + ++ EI
Sbjct: 178 FAGQSGVGKSSLLNAISPELGLRTNEI 204
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 33.0 bits (76), Expect = 0.25
Identities = 10/28 (35%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
Query: 391 LVGRSGAGKST-INNLLLRFYDIKYGEI 417
G+SG GKS+ +N LL +I ++
Sbjct: 220 FAGQSGVGKSSLLNALLGLQNEILTNDV 247
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 32.0 bits (72), Expect = 0.39
Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 24/102 (23%)
Query: 382 TIQPGEKIGLVGRSGAGKSTINNLL-----LRFYDI------------KYGEILIDG--- 421
T +P + ++G SG+GK+TI + + L F + + G L D
Sbjct: 25 TGEPTRHVVVMGVSGSGKTTIAHGVADETGLEFAEADAFHSPENIATMQRGIPLTDEDRW 84
Query: 422 ---QNISNVSQESLREQIGMVTQDTSLLHRSIRDNILYGRPD 460
++++ + + S L R+ RD + G P
Sbjct: 85 PWLRSLAEWMDARADAGVSTII-TCSALKRTYRDVLREGPPS 125
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 31.8 bits (73), Expect = 0.43
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 16/58 (27%)
Query: 380 SLTIQPGE-KIGLVGRSGAGKSTINNLLLRFYDIKYGE------------ILIDGQNI 424
+L Q E K+G+VG +GKS L+ R+ Y + I++DGQ+
Sbjct: 13 NLYFQGPELKVGIVGNLSSGKSA---LVHRYLTGTYVQEESPEGGRFKKEIVVDGQSY 67
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 31.4 bits (72), Expect = 0.54
Identities = 8/32 (25%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
K+ ++G S GK+ + L R+ D + +
Sbjct: 25 KLLIIGNSSVGKT---SFLFRYADDTFTPAFV 53
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 32.0 bits (72), Expect = 0.65
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Query: 388 KIGLVGRSGAGKST-INNLL 406
+ + G +G+GKS+ IN L
Sbjct: 71 NVAVTGETGSGKSSFINTLR 90
>3tuf_B Stage II sporulation protein Q; intercellular signalling,
intercellular channel, sporulation engulfment and
signalling, intercellular space; 2.26A {Bacillus
subtilis} PDB: 3uz0_B
Length = 245
Score = 31.5 bits (71), Expect = 0.68
Identities = 3/20 (15%), Positives = 10/20 (50%)
Query: 382 TIQPGEKIGLVGRSGAGKST 401
++ + IG G++ + +
Sbjct: 142 KVKQNQVIGKSGKNLYSEDS 161
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 31.0 bits (71), Expect = 0.69
Identities = 17/51 (33%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE--------------ILIDGQNI 424
K+ L+G SG GKS NLL RF ++ I +DG+ I
Sbjct: 31 KVVLIGDSGVGKS---NLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTI 78
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium,
SGC, cytoplasm, nucleotide-binding, nucleus,
phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB:
2q3f_A*
Length = 196
Score = 31.1 bits (70), Expect = 0.70
Identities = 10/31 (32%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
+I L+G +GKS+I ++ F+ + E L
Sbjct: 22 RILLMGLRRSGKSSIQKVV--FHKMSPNETL 50
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 31.0 bits (71), Expect = 0.73
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 3/27 (11%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKY 414
K+ LVG SG GK+ LL+RF D +
Sbjct: 12 KVMLVGDSGVGKT---CLLVRFKDGAF 35
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 31.1 bits (71), Expect = 0.76
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
K+ L+G SG GKS NLL RF ++
Sbjct: 7 KVVLIGDSGVGKS---NLLSRFTRNEFNL 32
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like
domain, protein binding; 1.31A {Homo sapiens} SCOP:
c.37.1.1
Length = 180
Score = 30.9 bits (71), Expect = 0.78
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYG 415
L+G G G+ I N L+ + ++
Sbjct: 10 LLGAHGVGRRHIKNTLITKHPDRFA 34
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 31.1 bits (71), Expect = 0.80
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 3/32 (9%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
KI ++G S GK+ + L R+ D + +
Sbjct: 10 KILIIGNSSVGKT---SFLFRYADDSFTPAFV 38
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC,
coiled coil, GTP- binding, nucleotide-binding, immune
system; HET: GDP; 2.15A {Homo sapiens}
Length = 239
Score = 31.1 bits (70), Expect = 0.81
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 388 KIGLVGRSGAGKSTINNLLL 407
+I LVG++GAGKS N +L
Sbjct: 31 RIVLVGKTGAGKSATGNSIL 50
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 30.8 bits (70), Expect = 0.88
Identities = 14/29 (48%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
KI L+G SG GKS NLL RF ++
Sbjct: 15 KIVLIGDSGVGKS---NLLSRFTKNEFNM 40
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 31.5 bits (72), Expect = 0.91
Identities = 14/40 (35%), Positives = 18/40 (45%), Gaps = 13/40 (32%)
Query: 389 IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVS 428
I + GR GKS+ N L+ GQN+S VS
Sbjct: 37 IVVAGRRNVGKSSFMNALV-------------GQNVSIVS 63
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 30.6 bits (70), Expect = 0.94
Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEILI 419
K+ ++G SG GKS +LLLRF D + I
Sbjct: 11 KLLIIGDSGVGKS---SLLLRFADNTFSGSYI 39
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 30.6 bits (70), Expect = 0.96
Identities = 11/35 (31%), Positives = 15/35 (42%), Gaps = 1/35 (2%)
Query: 391 LVGRSGAGKSTINNLL-LRFYDIKYGEILIDGQNI 424
L G G+GK+TI L Y ++DG
Sbjct: 18 LTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 30.7 bits (70), Expect = 0.97
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G SG GKS LLLRF D
Sbjct: 10 KLLLIGNSGVGKS---CLLLRFSD 30
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 30.6 bits (70), Expect = 1.0
Identities = 11/25 (44%), Positives = 14/25 (56%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYG 415
L+G SG G+S I N LL K+
Sbjct: 24 LIGASGVGRSHIKNALLSQNPEKFV 48
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 30.7 bits (70), Expect = 1.0
Identities = 14/24 (58%), Positives = 17/24 (70%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
KI ++G SG GKS +LLLRF D
Sbjct: 17 KILIIGESGVGKS---SLLLRFTD 37
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 30.7 bits (70), Expect = 1.0
Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 3/29 (10%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
K+ L+G SG GK+ NLL RF ++
Sbjct: 27 KVVLIGESGVGKT---NLLSRFTRNEFSH 52
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 30.7 bits (70), Expect = 1.1
Identities = 16/29 (55%), Positives = 18/29 (62%), Gaps = 3/29 (10%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
K+ L+G SG GKS LLLRF D Y E
Sbjct: 18 KLLLIGDSGVGKS---CLLLRFADDTYTE 43
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 30.4 bits (69), Expect = 1.1
Identities = 16/51 (31%), Positives = 24/51 (47%), Gaps = 17/51 (33%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE--------------ILIDGQNI 424
KI L+G SG GKS LL+RF + K+ + I+G+ +
Sbjct: 22 KILLIGDSGVGKS---CLLVRFVEDKFNPSFITTIGIDFKIKTVDINGKKV 69
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 30.3 bits (69), Expect = 1.1
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
KI L+G +G GK+ L+ RF
Sbjct: 28 KIVLIGNAGVGKT---CLVRRFTQ 48
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 30.3 bits (69), Expect = 1.1
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
++ ++G G GK+ +L+ RF D
Sbjct: 28 QVIIIGSRGVGKT---SLMERFTD 48
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 30.2 bits (69), Expect = 1.2
Identities = 13/24 (54%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
KI L+G SG GKS LL+RF +
Sbjct: 5 KILLIGDSGVGKS---CLLVRFVE 25
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 30.2 bits (69), Expect = 1.2
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
K ++G G GKS LL +F + K+
Sbjct: 17 KYIIIGDMGVGKS---CLLHQFTEKKFMA 42
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 30.3 bits (69), Expect = 1.2
Identities = 8/24 (33%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ LVG + GK+ ++ RF
Sbjct: 31 KLVLVGDASVGKT---CVVQRFKT 51
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein,
nucleotide-binding, zinc-binding domain, SOS response,
metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans}
PDB: 2vf8_A*
Length = 842
Score = 31.3 bits (72), Expect = 1.2
Identities = 23/79 (29%), Positives = 42/79 (53%), Gaps = 16/79 (20%)
Query: 502 LSGGQRQRIAIARVILKNAP---ILLLDEATSAL---DSEAEIAIQKSLYNLM----KGK 551
LSGG+ QRI +A + ++ + +LDE T+ L D +++ L+ G
Sbjct: 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPAD------VERLQRQLVKLVDAGN 784
Query: 552 TVIAIAHRLSTISAMDRLI 570
TVIA+ H++ ++A D ++
Sbjct: 785 TVIAVEHKMQVVAASDWVL 803
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 30.3 bits (69), Expect = 1.2
Identities = 14/24 (58%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G SG GKS LLLRF D
Sbjct: 35 KLLLIGDSGVGKS---CLLLRFAD 55
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 30.3 bits (69), Expect = 1.2
Identities = 9/24 (37%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G S GK+ + L R+ D
Sbjct: 24 KLLLIGNSSVGKT---SFLFRYAD 44
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 30.2 bits (69), Expect = 1.3
Identities = 10/24 (41%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G SG GK+ +L RF +
Sbjct: 10 KLLLIGDSGVGKT---CVLFRFSE 30
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 30.5 bits (69), Expect = 1.3
Identities = 13/53 (24%), Positives = 27/53 (50%), Gaps = 8/53 (15%)
Query: 368 SYDQKHLIINNLSLTIQP---GEKIGLVGRSGAGKSTINNLL-----LRFYDI 412
+D++ I+ + ++P G + LVG G+GK+T+ ++ F+D
Sbjct: 27 PFDEEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79
>1byr_A Protein (endonuclease); phosphodiesterase,; 2.00A {Salmonella
typhimurium} SCOP: d.136.1.1 PDB: 1bys_A
Length = 155
Score = 30.1 bits (68), Expect = 1.3
Identities = 9/68 (13%), Positives = 26/68 (38%), Gaps = 1/68 (1%)
Query: 20 PPYKLISFILKCIYGVRKYILLVIFFTTLTGTFEALLFAAM-GKIIDLLSNIKPSLLWKN 78
P +L I + I ++ + T +AL+ A G + ++ + + + +
Sbjct: 11 PEGSARVLVLSAIDSAKTSIRMMAYSFTAPDIMKALVAAKKRGVDVKIVIDERGNTGRAS 70
Query: 79 YSSYILLL 86
++ +
Sbjct: 71 IAAMNYIA 78
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 30.3 bits (69), Expect = 1.3
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
KI ++G S GK+ L RF
Sbjct: 22 KIIVIGDSNVGKT---CLTYRFCA 42
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 30.3 bits (69), Expect = 1.4
Identities = 11/51 (21%), Positives = 22/51 (43%), Gaps = 17/51 (33%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE--------------ILIDGQNI 424
K ++G +G GKS LL +F + K+ + + + G+ +
Sbjct: 27 KFLVIGSAGTGKS---CLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTV 74
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 30.3 bits (69), Expect = 1.4
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
KI L G + GKS + L+R
Sbjct: 30 KIVLAGDAAVGKS---SFLMRLCK 50
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 29.9 bits (68), Expect = 1.4
Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE--------------ILIDGQNI 424
K ++G +G GKS LLL+F D ++ + IDG+ I
Sbjct: 23 KYIIIGDTGVGKS---CLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQI 70
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 30.0 bits (67), Expect = 1.4
Identities = 14/77 (18%), Positives = 29/77 (37%), Gaps = 5/77 (6%)
Query: 379 LSLTIQPGEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNI-SNVSQESLREQIG 437
+S T L+G SG+GKS + + + + +DG + + E +
Sbjct: 1 MSTTNHDHHIYVLMGVSGSGKSAVASEVAH----QLHAAFLDGDFLHPRRNIEKMASGEP 56
Query: 438 MVTQDTSLLHRSIRDNI 454
+ D +++ D
Sbjct: 57 LNDDDRKPWLQALNDAA 73
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 29.8 bits (68), Expect = 1.5
Identities = 12/51 (23%), Positives = 22/51 (43%), Gaps = 17/51 (33%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE--------------ILIDGQNI 424
K ++G +G GKS LL +F + K+ + I + G+ +
Sbjct: 12 KFLVIGNAGTGKS---CLLHQFIEKKFKDDSNHTIGVEFGSKIINVGGKYV 59
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta
structure, hydrolase; HET: ADP; 2.40A {Salmonella
typhimurium}
Length = 438
Score = 30.8 bits (70), Expect = 1.6
Identities = 14/34 (41%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
IN L LT+ G+++GL SG GKS + ++ R+
Sbjct: 148 INAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARY 180
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Length = 347
Score = 30.3 bits (69), Expect = 1.6
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 376 INNLSLTIQPGEKIGLVGRSGAGKSTINNLLLRF 409
I+ L LT G++IG+ SG GKST+ ++
Sbjct: 62 IDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNG 94
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 29.9 bits (68), Expect = 1.6
Identities = 8/24 (33%), Positives = 14/24 (58%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K +G SG GK+ ++L ++ D
Sbjct: 13 KFLALGDSGVGKT---SVLYQYTD 33
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 29.8 bits (68), Expect = 1.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 17/51 (33%)
Query: 388 KIGLVGRSGAGKSTINNLLLRF--------YDIKYGE------ILIDGQNI 424
K+ LVG SG GKS L F ++++ E I++D + +
Sbjct: 4 KVMLVGESGVGKS---TLAGTFGGLQGDHAHEMENSEDTYERRIMVDKEEV 51
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 30.0 bits (68), Expect = 1.7
Identities = 9/24 (37%), Positives = 13/24 (54%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ +G SG GK+ L R+ D
Sbjct: 27 KLLALGDSGVGKT---TFLYRYTD 47
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1;
transferase, ATP sulfurylase, APS kinase, PAPS; HET:
ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5
c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Length = 630
Score = 30.6 bits (69), Expect = 1.7
Identities = 13/35 (37%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
Query: 391 LVGRSGAGKSTINNLL-LRFYDIKYGEILIDGQNI 424
L G SGAGK+T++ L +DG NI
Sbjct: 57 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 29.8 bits (68), Expect = 2.1
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYGEI 417
L G SG GKS+I + L +++ E+
Sbjct: 170 LAGPSGVGKSSILSRLTG-EELRTQEV 195
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 29.5 bits (67), Expect = 2.1
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 17/51 (33%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE--------------ILIDGQNI 424
K+ LVG SG GKS L F ++ I++D + +
Sbjct: 25 KVMLVGESGVGKS---TLAGTFGGLQGDSAHEPENPEDTYERRIMVDKEEV 72
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 29.6 bits (67), Expect = 2.1
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
KI L+G G GK+ + R D
Sbjct: 13 KICLIGDGGVGKT---TYINRVLD 33
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 29.4 bits (67), Expect = 2.2
Identities = 8/29 (27%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
KI ++G +GK+ +L F +G+
Sbjct: 8 KIVVLGDGASGKT---SLTTCFAQETFGK 33
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 30.0 bits (67), Expect = 2.3
Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 2/31 (6%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGEIL 418
K+ L+GRSG+GKS++ +++ F + +
Sbjct: 5 KLLLMGRSGSGKSSMRSII--FSNYSAFDTR 33
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 29.7 bits (66), Expect = 2.3
Identities = 11/20 (55%), Positives = 15/20 (75%)
Query: 388 KIGLVGRSGAGKSTINNLLL 407
++ LVGR+GAGKS N +L
Sbjct: 23 RLILVGRTGAGKSATGNSIL 42
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 30.0 bits (67), Expect = 2.4
Identities = 16/118 (13%), Positives = 38/118 (32%), Gaps = 15/118 (12%)
Query: 296 GIGAVAAATAMSLRLNGISHWVMWEIAALFESIGTIQDGMNMLSKKYKIVDNYNAKRLV- 354
G G A + +N H + E ++ + D + + + ++
Sbjct: 34 GSGKSTIAEELCQIINEKYHTFLSE----HPNVIEVNDRLKPMVNLVDSLKTLQPNKVAE 89
Query: 355 -VTNGKIF---FKNVSFSYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLLR 408
+ N +F ++V+F + + +N E +V R G + +
Sbjct: 90 MIENQGLFKDHVEDVNFQPVKYSALTSNN------EECTAVVARGGTANAIRIAAVDN 141
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 29.4 bits (67), Expect = 2.4
Identities = 11/24 (45%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G S GKS +L+LRF
Sbjct: 8 KLVLLGESAVGKS---SLVLRFVK 28
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 29.0 bits (66), Expect = 2.4
Identities = 9/24 (37%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G +G GKS +++ RF +
Sbjct: 8 KVCLLGDTGVGKS---SIMWRFVE 28
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 29.0 bits (66), Expect = 2.5
Identities = 8/24 (33%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G GK+ +L+LR+ +
Sbjct: 8 KVVLLGEGCVGKT---SLVLRYCE 28
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 29.5 bits (66), Expect = 2.5
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 2/32 (6%)
Query: 389 IGLVGRSGAGKSTINNLL--LRFYDIKYGEIL 418
I + G G+GKS LL I +++
Sbjct: 4 ILITGMPGSGKSEFAKLLKERGAKVIVMSDVV 35
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair,
nucleotide excision repai hydrolase-DNA complex; HET:
DNA; 2.90A {Thermotoga maritima}
Length = 916
Score = 30.1 bits (69), Expect = 2.5
Identities = 27/76 (35%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 502 LSGGQRQRIAIARVILKNAP---ILLLDEATSALDSEAEIAIQKSLYNLM----KGKTVI 554
LSGG+ QRI +A + K + +LDE T L E ++K + L +G TVI
Sbjct: 806 LSGGEAQRIKLASELRKRDTGRTLYILDEPTVGLHFE---DVRKLVEVLHRLVDRGNTVI 862
Query: 555 AIAHRLSTISAMDRLI 570
I H L I D +I
Sbjct: 863 VIEHNLDVIKNADHII 878
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 29.6 bits (67), Expect = 2.5
Identities = 9/24 (37%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ LVG G GK+T + R
Sbjct: 17 KLVLVGDGGTGKTT---FVKRHLT 37
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 30.0 bits (66), Expect = 2.6
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 388 KIGLVGRSGAGKSTINNLLLR 408
++ ++G GKST N L+
Sbjct: 71 RLLVLGDMKRGKSTFLNALIG 91
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 29.1 bits (66), Expect = 2.6
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 5/41 (12%)
Query: 377 NNLSLTIQPGEKIGLVGRSGAGKSTI-----NNLLLRFYDI 412
NL +I L G GAGK+T+ L + F D+
Sbjct: 16 ENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 29.0 bits (66), Expect = 2.7
Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G GAGKS +L+LRF
Sbjct: 14 KLVLLGDVGAGKS---SLVLRFVK 34
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 29.2 bits (66), Expect = 2.7
Identities = 8/24 (33%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ +VG + GKS L+ F
Sbjct: 22 KVAVVGEATVGKS---ALISMFTS 42
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 29.0 bits (65), Expect = 2.8
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G + GKS +++LRF
Sbjct: 5 KLVLLGEAAVGKS---SIVLRFVS 25
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 29.1 bits (66), Expect = 2.8
Identities = 9/29 (31%), Positives = 12/29 (41%), Gaps = 5/29 (17%)
Query: 388 KIGLVGRSGAGKSTINNLL-----LRFYD 411
I +VG G G +T+ L F D
Sbjct: 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 29.1 bits (66), Expect = 2.9
Identities = 12/31 (38%), Positives = 14/31 (45%), Gaps = 5/31 (16%)
Query: 386 GEKIGLVGRSGAGKSTINNLL-----LRFYD 411
K LVG G+GKSTI L + D
Sbjct: 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLLD 32
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 29.3 bits (65), Expect = 3.0
Identities = 11/35 (31%), Positives = 14/35 (40%)
Query: 386 GEKIGLVGRSGAGKSTINNLLLRFYDIKYGEILID 420
G + L G G+GKSTI L + D
Sbjct: 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 29.0 bits (66), Expect = 3.1
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKY 414
K+ L+G G GKS +L+ R+ K+
Sbjct: 9 KVILLGDGGVGKS---SLMNRYVTNKF 32
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 29.0 bits (66), Expect = 3.2
Identities = 7/27 (25%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKY 414
K+ +VG GKS +++ R+ +
Sbjct: 7 KMVVVGNGAVGKS---SMIQRYCKGIF 30
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 29.1 bits (64), Expect = 3.3
Identities = 7/23 (30%), Positives = 11/23 (47%)
Query: 389 IGLVGRSGAGKSTINNLLLRFYD 411
I L G +GK T + ++ Y
Sbjct: 4 IFLSGVKRSGKDTTADFIMSNYS 26
>1n8i_A Probable malate synthase G; glyoxylate pathway, acetyl coenzyme A,
isocitrate lyase, persistence, GLCB, structural
genomics, PSI; 2.10A {Mycobacterium tuberculosis} SCOP:
c.1.13.1 PDB: 1n8w_A* 2gq3_A*
Length = 741
Score = 29.8 bits (67), Expect = 3.5
Identities = 18/85 (21%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 504 GGQRQRIAIARVILKNAPILLLD--EATSALDSEAEIAIQKSLYNLMKGKTVIAIAHRLS 561
G R + VIL++A ++D ++ +A+D+ ++ ++ L KG A+ +
Sbjct: 249 VGTTDRAGVKDVILESAITTIMDFEDSVAAVDAADKVLGYRNWLGLNKGDLAAAVDKDGT 308
Query: 562 TISAMDRLIVLDNGCVAEEGSHLDL 586
R++ D A G L
Sbjct: 309 A---FLRVLNRDRNYTAPGGGQFTL 330
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 28.8 bits (65), Expect = 3.6
Identities = 8/27 (29%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKY 414
K+ ++G SG GK+ +L+ ++ + K+
Sbjct: 10 KVIILGDSGVGKT---SLMNQYVNKKF 33
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 28.7 bits (65), Expect = 3.6
Identities = 9/24 (37%), Positives = 15/24 (62%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ L+G +G GKS +++ RF
Sbjct: 25 KVCLLGDTGVGKS---SIVCRFVQ 45
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 28.6 bits (65), Expect = 3.7
Identities = 15/29 (51%), Positives = 16/29 (55%), Gaps = 5/29 (17%)
Query: 389 IGLVGRSGAGKSTINNLL-----LRFYDI 412
I LVG GAGKSTI L + FYD
Sbjct: 7 IFLVGPMGAGKSTIGRQLAQQLNMEFYDS 35
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC,
mitosis, GDP, C cycle, cell division, GTP-binding,
nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB:
2qa5_A* 3ftq_A*
Length = 301
Score = 29.4 bits (65), Expect = 3.7
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 389 IGLVGRSGAGKST-INNLL 406
+ +VG SG GKST IN+L
Sbjct: 21 LMVVGESGLGKSTLINSLF 39
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE;
1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Length = 260
Score = 29.3 bits (65), Expect = 3.8
Identities = 11/21 (52%), Positives = 15/21 (71%)
Query: 388 KIGLVGRSGAGKSTINNLLLR 408
+I LVG++G GKS N +LR
Sbjct: 24 RIILVGKTGTGKSAAGNSILR 44
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 28.7 bits (65), Expect = 3.8
Identities = 10/30 (33%), Positives = 15/30 (50%), Gaps = 5/30 (16%)
Query: 388 KIGLVGRSGAGKSTINNLL-----LRFYDI 412
I L+G GAGK+++ + L YD
Sbjct: 7 NIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 28.8 bits (65), Expect = 4.0
Identities = 14/49 (28%), Positives = 24/49 (48%), Gaps = 15/49 (30%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYG------------EILIDGQNI 424
++G++G + +GKS +L+ RF Y E+L+DGQ
Sbjct: 9 RLGVLGDARSGKS---SLIHRFLTGSYQVLEKTESEQYKKEMLVDGQTH 54
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 29.0 bits (65), Expect = 4.4
Identities = 16/81 (19%), Positives = 37/81 (45%), Gaps = 9/81 (11%)
Query: 389 IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQES-LREQIGMVTQDTSLLH 447
IG+ G + +GKS++ +++ + E+ + + +SQ+S R +
Sbjct: 25 IGVSGGTASGKSSVCAKIVQL--LGQNEVDYRQKQVVILSQDSFYRV------LTSEQKA 76
Query: 448 RSIRDNILYGRPDASECELFN 468
++++ + PDA + EL
Sbjct: 77 KALKGQFNFDHPDAFDNELIL 97
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 28.5 bits (64), Expect = 4.5
Identities = 10/81 (12%), Positives = 26/81 (32%), Gaps = 14/81 (17%)
Query: 389 IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR 448
+G+ G S +GK+T+ N L + + G ++ + + + +
Sbjct: 25 LGIDGLSRSGKTTLANQLSQ-------TLREQGISVCVFHMDDHI-------VERAKRYH 70
Query: 449 SIRDNILYGRPDASECELFNA 469
+ + + E
Sbjct: 71 TGNEEWFEYYYLQWDVEWLTH 91
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 28.8 bits (65), Expect = 4.6
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ +G GK+ +L+ RF
Sbjct: 18 KLVFLGEQSVGKT---SLITRFMY 38
>3org_A CMCLC; transporter, transport protein; 3.50A {Cyanidioschyzon
merolae}
Length = 632
Score = 29.3 bits (66), Expect = 4.6
Identities = 14/68 (20%), Positives = 27/68 (39%), Gaps = 2/68 (2%)
Query: 34 GVRKYILLVIFFTTLTGTFEALLFAAMGKIIDLLSNIKPSLLW--KNYSSYILLLGFILI 91
G Y+L ++ F TL G AL A+ + L ++ + ++ YIL + +
Sbjct: 2 GSLMYLLRLVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVA 61
Query: 92 SSTVFVGL 99
+
Sbjct: 62 LCLLSTFW 69
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 28.2 bits (64), Expect = 4.6
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 5/30 (16%)
Query: 388 KIGLVGRSGAGKSTINNLL-----LRFYDI 412
+I L+G +GKST+ +LL + FYD+
Sbjct: 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA
repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A
{Geobacillus}
Length = 670
Score = 29.0 bits (66), Expect = 5.1
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 10/76 (13%)
Query: 502 LSGGQRQRIAIARVILKNAP---ILLLDEATSALDSEAEIAIQKSLYNLM----KGKTVI 554
LSGG+ QR+ +A + + + + +LDE T+ L + I + L L G TV+
Sbjct: 544 LSGGEAQRVKLAAELHRRSNGRTLYILDEPTTGLHVD---DIARLLDVLHRLVDNGDTVL 600
Query: 555 AIAHRLSTISAMDRLI 570
I H L I D +I
Sbjct: 601 VIEHNLDVIKTADYII 616
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 28.5 bits (64), Expect = 5.2
Identities = 19/142 (13%), Positives = 40/142 (28%), Gaps = 40/142 (28%)
Query: 389 IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDGQNISNVSQESLREQIGMVTQDTSLLHR 448
+ L G G+GKST++N L + + V D L
Sbjct: 25 VALSGAPGSGKSTLSNPLAAALSAQGLPAEV-------------------VPMDGFHLDN 65
Query: 449 SIRDNIL----YGRPDASECELFNAAKCAEADIFIKSLTDEHGRKGYDAHVGEHGIKLSG 504
+ + G P+ F+ + F + ++ + +
Sbjct: 66 RLLEPRGLLPRKGAPET-----FD------FEGFQRLCHALKHQERVIYPLFDRARD--- 111
Query: 505 GQRQRIAIARVILKNAPILLLD 526
IA A + + +++
Sbjct: 112 ---IAIAGAAEVGPECRVAIIE 130
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 28.3 bits (64), Expect = 5.2
Identities = 10/29 (34%), Positives = 19/29 (65%), Gaps = 3/29 (10%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
K+ ++G SG GK+ +L+ R+ + KY +
Sbjct: 10 KVIILGDSGVGKT---SLMHRYVNDKYSQ 35
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 28.3 bits (64), Expect = 5.4
Identities = 7/24 (29%), Positives = 12/24 (50%), Gaps = 3/24 (12%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYD 411
K+ +G GK+ +L+ RF
Sbjct: 16 KLVFLGEQSVGKT---SLITRFMY 36
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein;
HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Length = 274
Score = 28.6 bits (63), Expect = 5.5
Identities = 11/19 (57%), Positives = 14/19 (73%), Gaps = 1/19 (5%)
Query: 389 IGLVGRSGAGKST-INNLL 406
+ +VG SG GKST IN+L
Sbjct: 11 LMVVGESGLGKSTLINSLF 29
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 28.3 bits (63), Expect = 5.9
Identities = 10/29 (34%), Positives = 15/29 (51%), Gaps = 3/29 (10%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE 416
K L+G S GKS +++LR + E
Sbjct: 9 KTVLLGESSVGKS---SIVLRLTKDTFHE 34
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for
structural genomics of infec diseases, csgid, putative
guanylate kinase; HET: MSE; 2.05A {Listeria
monocytogenes}
Length = 208
Score = 28.2 bits (64), Expect = 6.2
Identities = 7/25 (28%), Positives = 12/25 (48%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYG 415
L G SG GK T+ + + + +
Sbjct: 13 LSGPSGVGKGTVREAVFKDPETSFD 37
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 27.9 bits (63), Expect = 6.6
Identities = 9/50 (18%), Positives = 20/50 (40%), Gaps = 16/50 (32%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKYGE-------------ILIDGQNI 424
++ L+G G GK+ +L F + + + +DG++
Sbjct: 6 RVVLLGDPGVGKT---SLASLFAGKQERDLHEQLGEDVYERTLTVDGEDT 52
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase,
cell division, cell cycle, SEP GTP-binding; 2.20A
{Burkholderia thailandensis}
Length = 223
Score = 28.0 bits (63), Expect = 6.8
Identities = 12/21 (57%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 389 IGLVGRSGAGKST-INNLLLR 408
I GRS AGKST IN L +
Sbjct: 32 IAFAGRSNAGKSTAINVLCNQ 52
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 28.0 bits (63), Expect = 6.8
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKY 414
++ L+G G GKS L F +
Sbjct: 8 RVVLIGEQGVGKS---TLANIFAGVHD 31
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural
genomics, structural genomics of pathogenic protozoa
consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Length = 204
Score = 27.9 bits (63), Expect = 7.0
Identities = 6/21 (28%), Positives = 11/21 (52%)
Query: 395 SGAGKSTINNLLLRFYDIKYG 415
SG GK T+ +L + ++
Sbjct: 21 SGVGKGTLIKKVLSEFPSRFR 41
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 27.7 bits (62), Expect = 7.5
Identities = 10/27 (37%), Positives = 16/27 (59%), Gaps = 3/27 (11%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKY 414
K+ +VG +G+GK+T LL + K
Sbjct: 4 KLMIVGNTGSGKTT---LLQQLMKTKK 27
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom
consortium, transferase; HET: EPE; 2.18A {Plasmodium
falciparum}
Length = 218
Score = 27.9 bits (63), Expect = 7.7
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 395 SGAGKSTINNLLLRFYDIKYG 415
SG GK T+ LL + +
Sbjct: 32 SGVGKGTLIKKLLNEFPNYFY 52
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics,
nysgxrc T16, GTPase, PSI, protein structure initiative;
2.00A {Escherichia coli} SCOP: c.37.1.8
Length = 210
Score = 28.0 bits (63), Expect = 7.7
Identities = 9/21 (42%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
Query: 389 IGLVGRSGAGKST-INNLLLR 408
+ GRS AGKS+ +N L +
Sbjct: 29 VAFAGRSNAGKSSALNTLTNQ 49
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A
{Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A*
1zny_A* 1znz_A* 1s4q_A 1z8f_A
Length = 207
Score = 27.9 bits (63), Expect = 7.9
Identities = 13/45 (28%), Positives = 19/45 (42%), Gaps = 14/45 (31%)
Query: 391 LVGRSGAGKSTINNLLL-RFYDIKY-----------GEILIDGQN 423
L G S GKST+ L R ++ + GE +DG +
Sbjct: 25 LSGPSAVGKSTVVRCLRERIPNLHFSVSATTRAPRPGE--VDGVD 67
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide-
binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Length = 207
Score = 27.8 bits (63), Expect = 8.0
Identities = 8/25 (32%), Positives = 10/25 (40%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYG 415
L G SG GK T+ + Y
Sbjct: 11 LSGPSGVGKGTVRKRIFEDPSTSYK 35
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 27.7 bits (61), Expect = 8.1
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKY 414
I L G G GK+T+ L +KY
Sbjct: 13 NILLTGTPGVGKTTLGKELASKSGLKY 39
>2wqd_A Phosphoenolpyruvate-protein phosphotransferase; kinase, cytoplasm,
transport, magnesium, PEP- utilising enzyme,
phosphotransferase system; 2.40A {Staphylococcus aureus}
PDB: 2hro_A
Length = 572
Score = 28.3 bits (64), Expect = 8.2
Identities = 15/42 (35%), Positives = 19/42 (45%), Gaps = 4/42 (9%)
Query: 498 HGIKLSGGQRQRIAIARVILKNAPILLLDEATSALDSEAEIA 539
GI S G +AIA+ L P L D+ D E E+A
Sbjct: 6 KGIAASDG----VAIAKAYLLVEPDLTFDKNEKVTDVEGEVA 43
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization,
acetylation, ATP-binding, nucleotide-binding,
phosphoprotein, transferase; 1.80A {Saccharomyces
cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A
2zzy_A
Length = 186
Score = 27.8 bits (63), Expect = 8.3
Identities = 10/25 (40%), Positives = 13/25 (52%)
Query: 391 LVGRSGAGKSTINNLLLRFYDIKYG 415
+ G SG GKST+ L Y +G
Sbjct: 6 ISGPSGTGKSTLLKKLFAEYPDSFG 30
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 28.2 bits (62), Expect = 8.4
Identities = 8/40 (20%), Positives = 20/40 (50%)
Query: 368 SYDQKHLIINNLSLTIQPGEKIGLVGRSGAGKSTINNLLL 407
H ++ + ++ G ++ +VG S GK++++ L
Sbjct: 120 YIYNLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLC 159
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 27.9 bits (61), Expect = 8.4
Identities = 14/50 (28%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 375 IINNLSLTIQPGEK---IGLVGRSGAGKSTINNLLLRFYDIKYGEILIDG 421
+ +L+ + ++ I L G+SGAGK+TI+ + + + + ++IDG
Sbjct: 18 NLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQK--EFQGNIVIIDG 65
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 27.6 bits (62), Expect = 8.9
Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 16/50 (32%)
Query: 388 KIGLVGRSGAGKSTINNLLLRF--------YD----IKYG-EILIDGQNI 424
K+ + GR+G GKS L++RF YD Y + ID + +
Sbjct: 30 KLAIFGRAGVGKSA---LVVRFLTKRFIWEYDPTLESTYRHQATIDDEVV 76
>1aut_C Activated protein C; serine proteinase, plasma calcium binding,
glycoprotein, HYD hydrolase inhibitor complex, blood
clotting; HET: 0G6; 2.80A {Homo sapiens} SCOP: b.47.1.2
PDB: 3f6u_H*
Length = 250
Score = 28.0 bits (63), Expect = 9.0
Identities = 5/32 (15%), Positives = 11/32 (34%)
Query: 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVIL 517
K +GE+ ++ + I V +
Sbjct: 45 DESKKLLVRLGEYDLRRWEKWELDLDIKEVFV 76
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 27.7 bits (62), Expect = 9.4
Identities = 8/27 (29%), Positives = 12/27 (44%), Gaps = 3/27 (11%)
Query: 388 KIGLVGRSGAGKSTINNLLLRFYDIKY 414
++ L+G G GKS L F +
Sbjct: 39 RVVLIGEQGVGKS---TLANIFAGVHD 62
>1azz_A Collagenase; complex (serine protease/inhibitor), serine protease,
inhibitor, complex, protease-substrate interactions,
collagen; 2.30A {Celuca pugilator} SCOP: b.47.1.2
Length = 226
Score = 27.9 bits (63), Expect = 9.5
Identities = 6/31 (19%), Positives = 9/31 (29%)
Query: 486 HGRKGYDAHVGEHGIKLSGGQRQRIAIARVI 516
G D +G H I+ + I
Sbjct: 44 DGAGFVDVVLGAHNIREDEATQVTIQSTDFT 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.326 0.141 0.411
Gapped
Lambda K H
0.267 0.0529 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 9,371,224
Number of extensions: 593345
Number of successful extensions: 2241
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2088
Number of HSP's successfully gapped: 254
Length of query: 604
Length of database: 6,701,793
Length adjustment: 99
Effective length of query: 505
Effective length of database: 3,937,614
Effective search space: 1988495070
Effective search space used: 1988495070
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 60 (27.4 bits)