Query psy13351
Match_columns 837
No_of_seqs 633 out of 4876
Neff 7.5
Searched_HMMs 46136
Date Fri Aug 16 17:12:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13351.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13351hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0052 RpsB Ribosomal protein 100.0 2.8E-73 6.2E-78 571.8 19.9 218 1-219 9-226 (252)
2 PRK12311 rpsB 30S ribosomal pr 100.0 1.2E-66 2.5E-71 557.1 21.2 218 1-218 4-221 (326)
3 TIGR01011 rpsB_bact ribosomal 100.0 1.6E-65 3.5E-70 528.6 21.1 217 1-217 7-223 (225)
4 PRK05299 rpsB 30S ribosomal pr 100.0 3.6E-65 7.9E-70 534.4 20.9 218 1-218 9-226 (258)
5 CHL00067 rps2 ribosomal protei 100.0 3.7E-63 8E-68 512.7 21.0 217 1-217 13-229 (230)
6 PF00318 Ribosomal_S2: Ribosom 100.0 1.1E-58 2.5E-63 476.0 17.9 211 1-217 1-211 (211)
7 COG0233 Frr Ribosome recycling 100.0 2.8E-56 6.1E-61 431.1 20.2 184 654-837 4-187 (187)
8 cd01425 RPS2 Ribosomal protein 100.0 2.3E-56 4.9E-61 453.1 20.1 193 1-215 1-193 (193)
9 COG0264 Tsf Translation elonga 100.0 5.9E-56 1.3E-60 457.2 20.9 221 215-442 5-231 (296)
10 TIGR01012 Sa_S2_E_A ribosomal 100.0 3E-54 6.4E-59 430.0 16.1 168 1-218 9-177 (196)
11 TIGR00116 tsf translation elon 100.0 4.3E-53 9.4E-58 446.5 22.2 218 215-440 4-224 (290)
12 PRK09377 tsf elongation factor 100.0 5E-53 1.1E-57 446.1 22.4 218 215-440 5-224 (290)
13 PRK00083 frr ribosome recyclin 100.0 1.5E-52 3.2E-57 417.6 21.8 183 655-837 3-185 (185)
14 PRK04020 rps2P 30S ribosomal p 100.0 3.2E-53 6.9E-58 425.1 15.9 169 1-219 15-184 (204)
15 TIGR00496 frr ribosome recycli 100.0 2.4E-51 5.3E-56 405.7 20.5 175 663-837 2-176 (176)
16 PTZ00254 40S ribosomal protein 100.0 4.5E-52 9.7E-57 425.4 14.9 169 1-218 18-187 (249)
17 cd00520 RRF Ribosome recycling 100.0 5.4E-50 1.2E-54 399.0 21.0 178 658-835 2-179 (179)
18 KOG0832|consensus 100.0 4E-51 8.7E-56 401.7 12.2 190 1-218 53-242 (251)
19 PF01765 RRF: Ribosome recycli 100.0 2.7E-44 5.8E-49 355.5 19.4 165 671-835 1-165 (165)
20 PRK12332 tsf elongation factor 100.0 5.7E-41 1.2E-45 336.6 16.0 146 216-361 5-198 (198)
21 CHL00098 tsf elongation factor 100.0 4E-40 8.6E-45 330.1 15.1 147 217-363 3-198 (200)
22 KOG4759|consensus 100.0 1.3E-39 2.8E-44 328.9 18.0 182 654-837 81-263 (263)
23 COG0528 PyrH Uridylate kinase 100.0 9.6E-39 2.1E-43 320.9 18.2 233 414-648 5-238 (238)
24 KOG1071|consensus 100.0 8.8E-39 1.9E-43 328.7 16.4 187 215-401 46-281 (340)
25 PRK14556 pyrH uridylate kinase 100.0 3.3E-37 7.1E-42 319.7 20.2 234 413-648 14-248 (249)
26 PF00889 EF_TS: Elongation fac 100.0 4.4E-35 9.5E-40 301.7 15.8 166 267-440 1-171 (221)
27 PRK14558 pyrH uridylate kinase 100.0 2.5E-34 5.4E-39 301.5 20.6 228 416-648 2-230 (231)
28 PRK00358 pyrH uridylate kinase 100.0 3.1E-34 6.6E-39 301.1 19.8 230 416-647 2-231 (231)
29 cd04239 AAK_UMPK-like AAK_UMPK 100.0 9.9E-34 2.2E-38 296.6 20.6 228 417-647 2-229 (229)
30 PRK14557 pyrH uridylate kinase 100.0 9.5E-34 2.1E-38 297.5 17.8 237 413-651 3-241 (247)
31 cd04254 AAK_UMPK-PyrH-Ec UMP k 100.0 1.5E-33 3.4E-38 295.3 19.3 229 417-647 3-231 (231)
32 TIGR02075 pyrH_bact uridylate 100.0 2.1E-33 4.4E-38 294.6 19.2 231 415-647 2-233 (233)
33 COG0263 ProB Glutamate 5-kinas 100.0 1.2E-30 2.7E-35 275.3 17.0 230 414-650 6-261 (369)
34 cd04253 AAK_UMPK-PyrH-Pf AAK_U 100.0 9.2E-29 2E-33 257.6 17.0 209 417-647 2-221 (221)
35 TIGR02076 pyrH_arch uridylate 100.0 2.6E-28 5.6E-33 254.4 18.9 209 418-647 2-221 (221)
36 PRK12314 gamma-glutamyl kinase 100.0 4.4E-28 9.6E-33 258.5 18.1 230 415-649 10-265 (266)
37 PTZ00489 glutamate 5-kinase; P 100.0 5.4E-28 1.2E-32 255.9 17.7 228 414-649 8-260 (264)
38 PRK13402 gamma-glutamyl kinase 100.0 6.7E-28 1.5E-32 266.2 17.6 230 414-649 5-258 (368)
39 cd04256 AAK_P5CS_ProBA AAK_P5C 100.0 6.9E-28 1.5E-32 258.5 17.0 231 413-647 7-284 (284)
40 KOG0830|consensus 100.0 3E-28 6.5E-33 241.4 11.8 156 16-218 2-158 (254)
41 cd04242 AAK_G5K_ProB AAK_G5K_P 99.9 3.3E-27 7.2E-32 250.6 19.0 226 417-647 2-251 (251)
42 cd02115 AAK Amino Acid Kinases 99.9 2.4E-27 5.1E-32 251.7 16.7 207 439-646 13-248 (248)
43 PRK05429 gamma-glutamyl kinase 99.9 3.9E-27 8.4E-32 262.5 19.0 232 414-649 8-262 (372)
44 TIGR01027 proB glutamate 5-kin 99.9 4.3E-27 9.2E-32 261.1 18.3 229 416-649 2-254 (363)
45 cd04241 AAK_FomA-like AAK_FomA 99.9 4.1E-27 8.8E-32 250.5 14.8 221 417-646 2-252 (252)
46 cd04261 AAK_AKii-LysC-BS AAK_A 99.9 1E-26 2.3E-31 245.2 17.2 201 437-647 13-239 (239)
47 cd04255 AAK_UMPK-MosAB AAK_UMP 99.9 4.4E-26 9.5E-31 241.6 19.6 212 417-647 33-262 (262)
48 cd04246 AAK_AK-DapG-like AAK_A 99.9 4.3E-26 9.2E-31 240.6 18.7 201 437-647 13-239 (239)
49 COG1608 Predicted archaeal kin 99.9 1E-26 2.3E-31 233.6 13.1 223 418-647 4-251 (252)
50 PRK08841 aspartate kinase; Val 99.9 3.6E-25 7.8E-30 247.9 23.6 205 435-649 13-243 (392)
51 COG0527 LysC Aspartokinases [A 99.9 1.2E-24 2.7E-29 245.4 24.4 322 436-773 14-444 (447)
52 cd04234 AAK_AK AAK_AK: Amino A 99.9 6.6E-25 1.4E-29 229.5 18.5 192 437-647 13-227 (227)
53 cd04260 AAK_AKi-DapG-BS AAK_AK 99.9 8E-25 1.7E-29 231.3 17.5 201 437-647 13-244 (244)
54 PRK06635 aspartate kinase; Rev 99.9 3.1E-24 6.8E-29 243.8 23.3 266 437-756 15-312 (404)
55 cd04235 AAK_CK AAK_CK: Carbama 99.9 7.2E-25 1.6E-29 234.8 16.1 223 417-647 2-308 (308)
56 TIGR00746 arcC carbamate kinas 99.9 1.3E-24 2.7E-29 234.4 17.6 224 416-647 2-309 (310)
57 PRK14058 acetylglutamate/acety 99.9 1.6E-24 3.6E-29 232.0 16.4 200 443-648 16-267 (268)
58 COG0548 ArgB Acetylglutamate k 99.9 4.4E-24 9.6E-29 222.1 19.0 214 431-648 10-265 (265)
59 KOG1154|consensus 99.9 5.7E-25 1.2E-29 218.0 10.8 233 413-649 8-276 (285)
60 TIGR00656 asp_kin_monofn aspar 99.9 6.5E-24 1.4E-28 241.0 19.9 203 437-649 14-244 (401)
61 TIGR01092 P5CS delta l-pyrroli 99.9 5.6E-24 1.2E-28 255.4 19.6 235 414-652 7-279 (715)
62 PRK07431 aspartate kinase; Pro 99.9 7.1E-23 1.5E-27 242.8 25.0 325 436-773 14-409 (587)
63 PRK12353 putative amino acid k 99.9 2.4E-23 5.2E-28 226.4 16.7 226 415-648 3-314 (314)
64 PRK08210 aspartate kinase I; R 99.9 1.8E-23 3.9E-28 237.2 16.2 202 438-649 16-248 (403)
65 CHL00202 argB acetylglutamate 99.9 5E-23 1.1E-27 222.0 18.7 207 438-647 38-283 (284)
66 PLN02512 acetylglutamate kinas 99.9 8.6E-23 1.9E-27 222.3 19.7 207 439-648 63-309 (309)
67 PLN02418 delta-1-pyrroline-5-c 99.9 5.5E-23 1.2E-27 246.3 19.5 233 414-651 15-286 (718)
68 PRK12454 carbamate kinase-like 99.9 4E-23 8.6E-28 220.9 16.3 225 416-648 4-313 (313)
69 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.9 1.1E-22 2.3E-27 219.5 16.5 218 416-646 16-279 (279)
70 cd04244 AAK_AK-LysC-like AAK_A 99.9 2.2E-22 4.8E-27 217.7 18.9 155 484-647 119-298 (298)
71 PRK00942 acetylglutamate kinas 99.9 5.3E-23 1.1E-27 222.4 14.1 219 415-649 24-283 (283)
72 cd04259 AAK_AK-DapDC AAK_AK-Da 99.9 4.8E-22 1E-26 214.2 19.3 203 436-647 12-295 (295)
73 PRK12686 carbamate kinase; Rev 99.9 3E-22 6.5E-27 214.7 15.2 224 416-647 4-311 (312)
74 TIGR00657 asp_kinases aspartat 99.9 8.9E-22 1.9E-26 225.8 19.0 312 435-756 12-425 (441)
75 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.9 3.6E-22 7.9E-27 212.5 14.4 192 442-646 14-257 (257)
76 cd04238 AAK_NAGK-like AAK_NAGK 99.9 5E-22 1.1E-26 211.8 14.9 201 439-646 14-256 (256)
77 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.9 4.2E-22 9.1E-27 211.8 13.9 200 439-646 14-252 (252)
78 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.9 1.8E-21 3.9E-26 209.9 18.7 155 484-647 118-294 (294)
79 cd04243 AAK_AK-HSDH-like AAK_A 99.9 3.2E-21 7E-26 207.8 18.3 155 484-647 117-293 (293)
80 PRK06291 aspartate kinase; Pro 99.9 4E-21 8.7E-26 221.1 19.5 159 482-649 121-304 (465)
81 cd04240 AAK_UC AAK_UC: Unchara 99.9 1.7E-21 3.7E-26 199.7 12.7 180 441-646 12-203 (203)
82 PF00696 AA_kinase: Amino acid 99.9 7.8E-22 1.7E-26 208.6 10.6 201 417-626 3-242 (242)
83 cd04245 AAK_AKiii-YclM-BS AAK_ 99.9 5.9E-21 1.3E-25 204.7 17.3 159 480-647 109-288 (288)
84 PRK08373 aspartate kinase; Val 99.9 1.2E-20 2.6E-25 206.2 19.7 157 482-649 101-280 (341)
85 PLN02551 aspartokinase 99.9 5.5E-20 1.2E-24 212.1 25.8 227 480-759 162-416 (521)
86 cd04258 AAK_AKiii-LysC-EC AAK_ 99.9 1.2E-20 2.5E-25 202.7 18.5 158 481-647 111-292 (292)
87 PRK12352 putative carbamate ki 99.8 1.8E-20 3.9E-25 202.5 18.6 225 416-648 4-315 (316)
88 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.8 1.6E-20 3.5E-25 202.5 17.9 157 484-649 126-306 (306)
89 TIGR02078 AspKin_pair Pyrococc 99.8 2E-20 4.3E-25 203.4 16.2 141 499-649 108-271 (327)
90 PRK09034 aspartate kinase; Rev 99.8 3.8E-20 8.3E-25 212.1 19.2 266 482-756 111-434 (454)
91 PRK12354 carbamate kinase; Rev 99.8 1.4E-20 3.1E-25 200.8 14.2 224 417-649 3-301 (307)
92 PRK09084 aspartate kinase III; 99.8 3.6E-20 7.7E-25 211.8 18.3 157 483-649 109-290 (448)
93 TIGR00761 argB acetylglutamate 99.8 1.3E-20 2.8E-25 197.9 12.9 178 441-624 15-230 (231)
94 PRK09411 carbamate kinase; Rev 99.8 5.3E-20 1.2E-24 194.7 17.4 216 424-647 9-296 (297)
95 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.8 7.6E-20 1.7E-24 196.7 14.1 214 415-646 19-280 (280)
96 PRK09436 thrA bifunctional asp 99.8 2.3E-18 5E-23 209.7 27.4 157 484-649 120-298 (819)
97 PRK05925 aspartate kinase; Pro 99.8 3.2E-19 6.9E-24 202.3 17.4 158 483-649 102-281 (440)
98 PRK05279 N-acetylglutamate syn 99.8 1.4E-19 3.1E-24 207.8 14.3 217 415-649 26-292 (441)
99 cd04252 AAK_NAGK-fArgBP AAK_NA 99.8 2.6E-19 5.6E-24 189.6 14.9 196 441-646 14-248 (248)
100 PRK09466 metL bifunctional asp 99.8 3.4E-19 7.4E-24 215.2 17.2 156 484-648 123-300 (810)
101 TIGR01890 N-Ac-Glu-synth amino 99.8 1.8E-18 3.9E-23 197.8 18.9 218 415-650 18-281 (429)
102 cd04236 AAK_NAGS-Urea AAK_NAGS 99.8 1.3E-18 2.8E-23 184.4 15.4 195 436-646 48-271 (271)
103 PRK09181 aspartate kinase; Val 99.8 1E-17 2.2E-22 191.7 23.4 225 479-757 135-377 (475)
104 COG0549 ArcC Carbamate kinase 99.8 2.2E-18 4.8E-23 177.1 15.3 219 424-648 8-312 (312)
105 PRK08961 bifunctional aspartat 99.8 2.3E-18 4.9E-23 211.9 15.4 152 489-649 125-306 (861)
106 cd04248 AAK_AK-Ectoine AAK_AK- 99.7 1.8E-17 3.9E-22 176.4 16.0 159 479-647 129-304 (304)
107 KOG0456|consensus 99.7 5.2E-16 1.1E-20 164.0 16.1 277 432-778 158-462 (559)
108 PRK04531 acetylglutamate kinas 99.7 7.7E-16 1.7E-20 172.3 15.9 191 415-650 37-251 (398)
109 COG2054 Uncharacterized archae 99.6 4.1E-15 9E-20 142.9 14.4 173 455-648 26-210 (212)
110 PLN02825 amino-acid N-acetyltr 99.6 7.6E-14 1.6E-18 160.2 20.0 202 440-649 33-365 (515)
111 PF00889 EF_TS: Elongation fac 99.4 5.9E-13 1.3E-17 137.7 7.8 90 261-360 83-221 (221)
112 COG0264 Tsf Translation elonga 99.4 1.4E-12 3.1E-17 136.1 8.7 82 269-363 151-280 (296)
113 TIGR00116 tsf translation elon 99.3 2.3E-12 5E-17 137.2 9.5 88 261-362 138-274 (290)
114 PRK09377 tsf elongation factor 99.3 8.3E-12 1.8E-16 133.1 9.9 155 175-362 70-274 (290)
115 CHL00098 tsf elongation factor 99.2 2.4E-11 5.2E-16 122.8 5.4 82 353-440 49-141 (200)
116 PRK12332 tsf elongation factor 99.1 1.6E-10 3.6E-15 116.8 6.8 82 353-440 52-143 (198)
117 KOG2436|consensus 98.0 1.9E-05 4.2E-10 88.2 9.4 147 437-583 107-288 (520)
118 PF00627 UBA: UBA/TS-N domain; 97.3 0.00025 5.5E-09 52.0 3.2 33 218-251 5-37 (37)
119 PRK05441 murQ N-acetylmuramic 96.8 0.023 5E-07 62.1 15.0 195 35-254 41-274 (299)
120 PRK12570 N-acetylmuramic acid- 96.5 0.075 1.6E-06 58.0 16.1 193 36-253 38-269 (296)
121 cd05007 SIS_Etherase N-acetylm 96.0 0.046 1E-06 58.5 10.9 188 36-248 29-255 (257)
122 TIGR00274 N-acetylmuramic acid 95.9 0.19 4.1E-06 54.8 15.1 192 35-254 36-269 (291)
123 PRK06369 nac nascent polypepti 95.3 0.013 2.8E-07 54.0 2.8 73 173-253 42-114 (115)
124 TIGR00264 alpha-NAC-related pr 95.0 0.016 3.4E-07 53.2 2.6 73 171-253 44-116 (116)
125 KOG1071|consensus 94.9 0.0052 1.1E-07 65.3 -1.1 91 261-360 211-332 (340)
126 smart00165 UBA Ubiquitin assoc 94.8 0.031 6.7E-07 40.8 3.2 26 226-251 11-36 (37)
127 cd00194 UBA Ubiquitin Associat 94.5 0.04 8.7E-07 40.4 3.2 27 226-252 11-37 (38)
128 COG1308 EGD2 Transcription fac 87.4 0.52 1.1E-05 43.7 3.1 35 218-252 87-121 (122)
129 PF14555 UBA_4: UBA-like domai 87.3 0.52 1.1E-05 35.7 2.6 36 218-253 3-38 (43)
130 COG2103 Predicted sugar phosph 84.9 13 0.00028 39.5 12.0 195 35-253 39-271 (298)
131 PF13580 SIS_2: SIS domain; PD 83.5 13 0.00028 35.6 11.0 115 39-179 18-137 (138)
132 PRK00414 gmhA phosphoheptose i 81.9 29 0.00064 35.3 13.4 128 38-196 26-164 (192)
133 TIGR03127 RuMP_HxlB 6-phospho 81.3 14 0.0003 36.9 10.7 38 148-185 71-112 (179)
134 cd05006 SIS_GmhA Phosphoheptos 79.4 20 0.00044 35.7 11.2 46 148-193 100-151 (177)
135 PRK13938 phosphoheptose isomer 78.2 19 0.00041 36.9 10.5 133 36-196 25-166 (196)
136 COG0279 GmhA Phosphoheptose is 78.0 77 0.0017 31.5 13.9 134 36-196 21-164 (176)
137 PRK10892 D-arabinose 5-phospha 74.8 32 0.00069 38.0 12.1 45 148-192 93-143 (326)
138 PRK10886 DnaA initiator-associ 74.6 38 0.00083 34.7 11.6 31 39-69 24-54 (196)
139 PRK11557 putative DNA-binding 73.9 29 0.00063 37.3 11.3 46 148-193 174-225 (278)
140 PF10087 DUF2325: Uncharacteri 71.2 16 0.00035 32.7 7.1 77 58-178 1-81 (97)
141 PRK15482 transcriptional regul 70.8 47 0.001 35.9 12.0 45 149-193 182-232 (285)
142 PRK02947 hypothetical protein; 69.9 46 0.001 35.3 11.4 31 39-69 23-53 (246)
143 PF03943 TAP_C: TAP C-terminal 68.9 3 6.4E-05 33.0 1.5 36 218-253 3-38 (51)
144 cd05005 SIS_PHI Hexulose-6-pho 66.3 35 0.00077 34.1 9.2 49 148-196 74-130 (179)
145 smart00804 TAP_C C-terminal do 64.4 8.1 0.00018 32.0 3.3 37 217-253 14-50 (63)
146 PRK13936 phosphoheptose isomer 63.7 1.4E+02 0.003 30.5 13.1 51 148-198 110-169 (197)
147 PF12732 YtxH: YtxH-like prote 62.4 57 0.0012 27.7 8.4 33 754-786 20-52 (74)
148 COG1778 Low specificity phosph 61.1 8.3 0.00018 37.8 3.2 56 570-634 11-66 (170)
149 PF12685 SpoIIIAH: SpoIIIAH-li 59.4 36 0.00077 34.9 7.8 63 768-830 83-147 (196)
150 PRK11337 DNA-binding transcrip 58.3 1.1E+02 0.0024 33.1 11.9 46 148-193 186-237 (292)
151 PF13528 Glyco_trans_1_3: Glyc 57.8 56 0.0012 35.5 9.7 114 41-185 14-127 (318)
152 PF13433 Peripla_BP_5: Peripla 57.8 22 0.00048 39.9 6.3 49 56-105 133-187 (363)
153 cd05009 SIS_GlmS_GlmD_2 SIS (S 56.1 78 0.0017 30.2 9.4 67 148-214 60-135 (153)
154 cd06295 PBP1_CelR Ligand bindi 55.5 20 0.00044 37.8 5.6 47 148-195 63-109 (275)
155 COG4008 Predicted metal-bindin 54.4 14 0.00029 34.5 3.3 28 227-255 125-152 (153)
156 PF08938 HBS1_N: HBS1 N-termin 54.3 5.5 0.00012 34.5 0.7 34 229-262 45-78 (79)
157 PRK11382 frlB fructoselysine-6 54.2 1.7E+02 0.0037 32.6 12.8 94 149-249 92-192 (340)
158 PRK11302 DNA-binding transcrip 51.9 1E+02 0.0023 33.0 10.5 47 148-194 174-225 (284)
159 CHL00118 atpG ATP synthase CF0 51.9 77 0.0017 31.1 8.5 75 760-834 52-127 (156)
160 PRK13937 phosphoheptose isomer 50.5 2.4E+02 0.0052 28.4 12.2 31 39-69 21-51 (188)
161 TIGR02726 phenyl_P_delta pheny 50.4 26 0.00056 35.0 5.0 59 570-638 10-69 (169)
162 PRK06904 replicative DNA helic 49.6 1.3E+02 0.0028 35.3 11.3 73 18-95 210-289 (472)
163 PRK15408 autoinducer 2-binding 47.6 4.3E+02 0.0094 29.3 16.8 44 148-192 79-124 (336)
164 PRK08006 replicative DNA helic 47.3 2E+02 0.0043 33.8 12.3 75 17-96 212-292 (471)
165 PRK11070 ssDNA exonuclease Rec 47.1 1.3E+02 0.0028 36.2 10.9 105 34-183 48-161 (575)
166 cd05710 SIS_1 A subgroup of th 46.9 35 0.00076 31.7 5.0 50 148-197 46-101 (120)
167 PF02845 CUE: CUE domain; Int 46.7 27 0.00058 26.1 3.4 34 220-253 6-40 (42)
168 PRK08506 replicative DNA helic 46.1 94 0.002 36.4 9.5 84 17-106 180-271 (472)
169 PF04413 Glycos_transf_N: 3-De 45.9 91 0.002 31.6 8.2 91 40-178 32-124 (186)
170 PRK10780 periplasmic chaperone 45.2 2E+02 0.0044 28.4 10.4 87 748-834 25-117 (165)
171 PRK13454 F0F1 ATP synthase sub 43.4 1.2E+02 0.0025 30.7 8.5 26 769-794 81-106 (181)
172 PF01380 SIS: SIS domain SIS d 42.9 45 0.00098 30.8 5.2 49 150-198 54-110 (131)
173 cd06294 PBP1_ycjW_transcriptio 42.5 50 0.0011 34.5 6.0 60 148-211 59-119 (270)
174 PRK01919 tatB sec-independent 42.5 2.1E+02 0.0046 28.5 9.6 67 759-834 22-88 (169)
175 PF04007 DUF354: Protein of un 41.3 1.7E+02 0.0037 32.6 10.1 32 149-183 83-114 (335)
176 PRK13461 F0F1 ATP synthase sub 41.2 1.4E+02 0.0031 29.2 8.6 74 760-834 36-110 (159)
177 PRK08404 V-type ATP synthase s 41.2 2.5E+02 0.0054 25.6 9.4 60 763-832 2-61 (103)
178 PRK08674 bifunctional phosphog 41.0 38 0.00081 37.8 4.9 63 148-211 77-150 (337)
179 cd05013 SIS_RpiR RpiR-like pro 40.9 68 0.0015 29.7 6.1 48 148-195 59-112 (139)
180 PRK14101 bifunctional glucokin 40.8 2.8E+02 0.0061 33.8 12.8 48 148-195 514-566 (638)
181 PRK08840 replicative DNA helic 40.0 2.9E+02 0.0064 32.3 12.2 75 17-96 205-285 (464)
182 PF03480 SBP_bac_7: Bacterial 39.8 1.3E+02 0.0027 32.5 8.7 64 756-822 218-285 (286)
183 PRK00331 glucosamine--fructose 39.8 55 0.0012 39.6 6.5 98 148-250 335-447 (604)
184 TIGR01470 cysG_Nterm siroheme 39.5 64 0.0014 33.3 6.0 41 150-194 70-112 (205)
185 PLN02372 violaxanthin de-epoxi 39.3 1.4E+02 0.0029 33.9 8.6 72 722-793 327-405 (455)
186 PRK07004 replicative DNA helic 39.1 2.2E+02 0.0048 33.2 11.1 151 18-186 202-378 (460)
187 cd06278 PBP1_LacI_like_2 Ligan 38.9 46 0.001 34.6 5.1 60 148-211 53-112 (266)
188 PRK05759 F0F1 ATP synthase sub 38.4 1.7E+02 0.0036 28.5 8.6 31 804-834 79-109 (156)
189 PRK08475 F0F1 ATP synthase sub 38.4 1.7E+02 0.0036 29.2 8.6 74 760-833 52-126 (167)
190 PRK13455 F0F1 ATP synthase sub 38.3 1.6E+02 0.0034 29.7 8.6 75 760-834 57-132 (184)
191 PRK14472 F0F1 ATP synthase sub 38.2 1.6E+02 0.0035 29.4 8.6 50 775-834 74-123 (175)
192 PRK14473 F0F1 ATP synthase sub 38.1 1.7E+02 0.0036 28.9 8.6 29 806-834 85-113 (164)
193 PRK07353 F0F1 ATP synthase sub 37.7 1.8E+02 0.0039 27.7 8.6 62 773-834 48-110 (140)
194 PLN02335 anthranilate synthase 37.5 88 0.0019 32.7 6.7 38 51-88 13-50 (222)
195 PRK13608 diacylglycerol glucos 37.4 1.1E+02 0.0023 34.8 8.0 34 148-182 103-136 (391)
196 TIGR00441 gmhA phosphoheptose 37.2 94 0.002 30.3 6.6 49 148-196 78-132 (154)
197 KOG1970|consensus 36.9 3.3E+02 0.0071 32.5 11.4 191 54-254 107-319 (634)
198 PRK14475 F0F1 ATP synthase sub 36.5 1.8E+02 0.0039 28.8 8.5 75 760-834 40-115 (167)
199 TIGR01135 glmS glucosamine--fr 35.9 98 0.0021 37.5 7.8 98 148-250 337-449 (607)
200 PRK06569 F0F1 ATP synthase sub 35.7 2.9E+02 0.0062 27.3 9.4 54 769-828 67-120 (155)
201 PRK13460 F0F1 ATP synthase sub 35.6 1.9E+02 0.0041 28.9 8.6 28 807-834 94-121 (173)
202 PRK06231 F0F1 ATP synthase sub 35.2 1.9E+02 0.004 29.9 8.6 22 804-825 134-155 (205)
203 cd06271 PBP1_AglR_RafR_like Li 35.2 70 0.0015 33.3 5.8 58 148-209 58-115 (268)
204 PF03437 BtpA: BtpA family; I 34.9 1.3E+02 0.0028 32.3 7.5 85 560-649 134-233 (254)
205 PTZ00295 glucosamine-fructose- 34.7 93 0.002 38.0 7.3 47 149-195 369-421 (640)
206 PF06518 DUF1104: Protein of u 34.6 1.4E+02 0.0031 26.8 6.5 60 758-823 23-83 (93)
207 PF07442 Ponericin: Ponericin; 34.4 36 0.00079 23.0 2.0 19 244-262 6-26 (29)
208 PF09851 SHOCT: Short C-termin 34.2 57 0.0012 22.9 3.2 26 787-812 4-29 (31)
209 PRK09174 F0F1 ATP synthase sub 34.2 2E+02 0.0043 29.7 8.6 58 772-829 106-164 (204)
210 PRK07352 F0F1 ATP synthase sub 34.1 2.1E+02 0.0045 28.6 8.6 77 757-834 47-124 (174)
211 PRK13428 F0F1 ATP synthase sub 34.0 1.5E+02 0.0033 34.4 8.6 74 761-834 32-106 (445)
212 PRK14471 F0F1 ATP synthase sub 33.9 2.1E+02 0.0046 28.1 8.6 25 809-833 88-112 (164)
213 cd06299 PBP1_LacI_like_13 Liga 33.8 72 0.0016 33.2 5.5 58 148-209 54-111 (265)
214 PF00430 ATP-synt_B: ATP synth 33.8 1.3E+02 0.0029 28.0 6.9 72 763-834 43-115 (132)
215 KOG0100|consensus 33.4 3.2E+02 0.007 31.0 10.2 113 703-816 454-609 (663)
216 PRK05892 nucleoside diphosphat 33.2 2.4E+02 0.0053 27.8 8.7 68 755-830 6-73 (158)
217 PRK13453 F0F1 ATP synthase sub 33.2 2.2E+02 0.0047 28.4 8.6 22 773-794 72-93 (173)
218 PF08285 DPM3: Dolichol-phosph 33.1 28 0.0006 31.1 1.8 29 229-257 62-90 (91)
219 cd05014 SIS_Kpsf KpsF-like pro 33.0 80 0.0017 29.2 5.1 47 148-194 46-98 (128)
220 TIGR00587 nfo apurinic endonuc 32.8 1.4E+02 0.003 32.1 7.6 74 705-778 26-99 (274)
221 TIGR01461 greB transcription e 32.7 1.7E+02 0.0036 28.9 7.4 69 755-830 3-71 (156)
222 cd06273 PBP1_GntR_like_1 This 32.6 88 0.0019 32.6 6.0 60 148-211 54-113 (268)
223 PRK11543 gutQ D-arabinose 5-ph 32.1 2E+02 0.0043 31.5 8.8 45 148-192 88-138 (321)
224 TIGR00661 MJ1255 conserved hyp 32.1 3.2E+02 0.007 29.9 10.5 29 149-180 93-121 (321)
225 PF06925 MGDG_synth: Monogalac 32.0 89 0.0019 30.8 5.5 40 148-187 88-133 (169)
226 cd06283 PBP1_RegR_EndR_KdgR_li 31.6 84 0.0018 32.6 5.6 59 148-210 54-112 (267)
227 PRK08476 F0F1 ATP synthase sub 31.5 2.7E+02 0.0058 26.8 8.5 11 778-788 66-76 (141)
228 cd06270 PBP1_GalS_like Ligand 31.5 64 0.0014 33.8 4.7 60 148-211 54-113 (268)
229 PF03449 GreA_GreB_N: Transcri 31.3 3.3E+02 0.0071 23.3 8.0 66 757-830 6-72 (74)
230 CHL00019 atpF ATP synthase CF0 31.2 2.4E+02 0.0052 28.4 8.6 24 808-831 103-126 (184)
231 PRK06774 para-aminobenzoate sy 31.1 1.4E+02 0.0031 30.1 7.0 30 149-179 43-79 (191)
232 COG0707 MurG UDP-N-acetylgluco 31.1 1.3E+02 0.0027 34.0 7.1 111 42-186 14-127 (357)
233 cd05017 SIS_PGI_PMI_1 The memb 30.8 50 0.0011 30.6 3.3 53 148-201 42-105 (119)
234 cd05008 SIS_GlmS_GlmD_1 SIS (S 30.7 55 0.0012 30.3 3.6 38 148-185 45-86 (126)
235 cd06325 PBP1_ABC_uncharacteriz 30.7 2.1E+02 0.0045 30.0 8.5 58 150-207 185-247 (281)
236 PRK06568 F0F1 ATP synthase sub 30.5 2.9E+02 0.0063 27.2 8.6 51 770-830 55-105 (154)
237 PF03938 OmpH: Outer membrane 30.3 4.1E+02 0.0089 25.6 9.9 78 748-825 18-98 (158)
238 smart00546 CUE Domain that may 30.2 66 0.0014 24.1 3.2 26 228-253 16-41 (43)
239 COG1058 CinA Predicted nucleot 30.1 1.8E+02 0.004 31.1 7.7 71 494-569 22-92 (255)
240 TIGR01144 ATP_synt_b ATP synth 30.1 2.8E+02 0.0061 26.6 8.6 62 773-834 38-100 (147)
241 cd06267 PBP1_LacI_sugar_bindin 29.6 1E+02 0.0022 31.6 5.8 60 148-211 54-113 (264)
242 cd06314 PBP1_tmGBP Periplasmic 29.6 2.1E+02 0.0046 29.9 8.4 61 148-213 54-117 (271)
243 PF05008 V-SNARE: Vesicle tran 29.5 1.9E+02 0.0041 24.6 6.4 34 754-787 15-48 (79)
244 COG4069 Uncharacterized protei 29.3 50 0.0011 35.5 3.2 35 150-184 267-301 (367)
245 cd06274 PBP1_FruR Ligand bindi 29.1 1.1E+02 0.0025 31.8 6.1 60 148-211 54-113 (264)
246 PTZ00394 glucosamine-fructose- 29.0 1.3E+02 0.0027 37.1 7.1 100 149-254 401-515 (670)
247 cd06289 PBP1_MalI_like Ligand- 28.8 3.4E+02 0.0075 27.9 9.8 59 148-210 54-113 (268)
248 PRK13454 F0F1 ATP synthase sub 28.7 2.9E+02 0.0062 27.9 8.6 75 760-834 61-136 (181)
249 KOG0944|consensus 28.7 45 0.00098 39.8 3.0 28 227-254 646-673 (763)
250 PF03179 V-ATPase_G: Vacuolar 28.7 4.4E+02 0.0095 23.8 9.4 67 761-833 26-92 (105)
251 CHL00118 atpG ATP synthase CF0 28.6 2.6E+02 0.0057 27.3 8.1 72 763-834 66-138 (156)
252 PF07946 DUF1682: Protein of u 28.5 1.8E+02 0.0038 32.3 7.6 53 761-813 263-315 (321)
253 cd06320 PBP1_allose_binding Pe 28.3 2.5E+02 0.0054 29.4 8.6 60 149-212 57-118 (275)
254 cd06306 PBP1_TorT-like TorT-li 28.1 99 0.0022 32.5 5.5 63 148-213 56-119 (268)
255 PF10740 DUF2529: Protein of u 27.8 2.8E+02 0.006 27.8 7.9 39 149-187 81-124 (172)
256 TIGR03590 PseG pseudaminic aci 27.6 6.2E+02 0.013 27.2 11.6 49 149-197 80-128 (279)
257 PRK09165 replicative DNA helic 27.3 6.4E+02 0.014 29.8 12.4 87 18-106 206-311 (497)
258 PRK05636 replicative DNA helic 27.1 6.2E+02 0.013 30.0 12.2 82 8-96 246-333 (505)
259 TIGR02637 RhaS rhamnose ABC tr 26.8 2.6E+02 0.0056 29.9 8.6 34 148-182 55-90 (302)
260 TIGR02919 accessory Sec system 26.8 3.7E+02 0.0081 31.2 10.1 47 150-196 348-397 (438)
261 PTZ00372 endonuclease 4-like p 26.8 1.5E+02 0.0033 34.1 6.7 72 705-777 156-228 (413)
262 PRK05595 replicative DNA helic 26.7 6.9E+02 0.015 28.9 12.5 83 17-104 189-279 (444)
263 KOG1664|consensus 26.7 2.3E+02 0.005 29.1 7.1 55 775-835 9-63 (220)
264 cd06302 PBP1_LsrB_Quorum_Sensi 26.5 3.2E+02 0.007 29.2 9.2 63 148-212 55-119 (298)
265 PRK14474 F0F1 ATP synthase sub 26.4 3E+02 0.0065 29.4 8.6 61 773-833 48-109 (250)
266 TIGR02302 aProt_lowcomp conser 26.3 3.1E+02 0.0068 34.5 9.8 70 757-828 474-548 (851)
267 PRK14472 F0F1 ATP synthase sub 26.1 3.4E+02 0.0074 27.0 8.6 24 769-792 75-98 (175)
268 TIGR01670 YrbI-phosphatas 3-de 25.9 1.4E+02 0.003 29.1 5.6 60 570-639 4-64 (154)
269 PRK09174 F0F1 ATP synthase sub 25.8 5.4E+02 0.012 26.5 10.1 75 760-834 83-158 (204)
270 PF04026 SpoVG: SpoVG; InterP 25.8 2.8E+02 0.0061 24.4 6.8 74 691-777 5-84 (84)
271 PF06972 DUF1296: Protein of u 25.5 78 0.0017 25.8 2.9 36 219-254 9-45 (60)
272 TIGR03321 alt_F1F0_F0_B altern 25.4 3.1E+02 0.0068 29.0 8.6 25 808-832 84-108 (246)
273 PRK03669 mannosyl-3-phosphogly 25.3 1E+02 0.0022 32.9 5.0 29 610-638 31-59 (271)
274 COG0449 GlmS Glucosamine 6-pho 25.2 1.6E+02 0.0035 35.3 6.8 94 151-249 332-440 (597)
275 KOG2561|consensus 25.2 79 0.0017 36.1 3.9 75 188-262 251-349 (568)
276 PRK09173 F0F1 ATP synthase sub 25.2 3.7E+02 0.0079 26.3 8.5 20 773-792 56-75 (159)
277 TIGR03088 stp2 sugar transfera 24.8 4.1E+02 0.0089 29.3 9.9 38 149-187 272-310 (374)
278 PRK01885 greB transcription el 24.7 2.9E+02 0.0063 27.2 7.6 66 756-829 6-72 (157)
279 PRK05670 anthranilate synthase 24.6 1.3E+02 0.0029 30.2 5.4 30 59-88 2-31 (189)
280 COG1879 RbsB ABC-type sugar tr 24.3 1.9E+02 0.0041 31.5 7.0 125 148-315 90-218 (322)
281 cd06300 PBP1_ABC_sugar_binding 24.3 1.2E+02 0.0026 31.8 5.2 58 148-209 59-118 (272)
282 COG3524 KpsE Capsule polysacch 24.1 4.5E+02 0.0098 28.8 9.1 73 715-802 142-214 (372)
283 PRK13453 F0F1 ATP synthase sub 24.0 4E+02 0.0087 26.5 8.6 75 760-834 48-123 (173)
284 COG1638 DctP TRAP-type C4-dica 23.9 4.2E+02 0.0091 29.5 9.5 103 713-822 207-314 (332)
285 cd06308 PBP1_sensor_kinase_lik 23.9 1.6E+02 0.0035 30.8 6.1 60 148-211 55-117 (270)
286 PRK06749 replicative DNA helic 23.7 6.1E+02 0.013 29.3 11.1 82 19-106 176-267 (428)
287 KOG0225|consensus 23.6 1.3E+02 0.0028 33.3 5.1 58 755-825 297-355 (394)
288 cd06318 PBP1_ABC_sugar_binding 23.3 1.2E+02 0.0027 31.8 5.2 59 148-210 54-116 (282)
289 cd06297 PBP1_LacI_like_12 Liga 23.3 2.5E+02 0.0055 29.3 7.5 59 148-212 54-112 (269)
290 PRK12446 undecaprenyldiphospho 23.3 2.4E+02 0.0053 31.5 7.7 34 149-183 91-124 (352)
291 cd06277 PBP1_LacI_like_1 Ligan 23.2 1.3E+02 0.0027 31.5 5.1 57 148-209 57-113 (268)
292 PF01497 Peripla_BP_2: Peripla 23.2 1.3E+02 0.0028 30.9 5.1 36 149-184 60-95 (238)
293 PF00244 14-3-3: 14-3-3 protei 23.2 1.7E+02 0.0036 31.0 5.9 73 754-826 31-104 (236)
294 cd06305 PBP1_methylthioribose_ 23.2 1.1E+02 0.0023 32.0 4.6 60 148-211 54-115 (273)
295 TIGR01481 ccpA catabolite cont 23.1 4.1E+02 0.0089 28.7 9.3 125 45-209 164-306 (329)
296 cd06279 PBP1_LacI_like_3 Ligan 23.0 1.4E+02 0.003 31.7 5.4 59 148-211 55-113 (283)
297 PRK06231 F0F1 ATP synthase sub 23.0 3.5E+02 0.0076 27.9 8.1 75 759-834 78-153 (205)
298 TIGR01685 MDP-1 magnesium-depe 23.0 1.3E+02 0.0029 30.1 4.9 68 12-80 11-84 (174)
299 TIGR02609 doc_partner putative 22.6 2E+02 0.0043 24.5 5.2 38 746-783 35-72 (74)
300 cd06301 PBP1_rhizopine_binding 22.6 4.9E+02 0.011 27.0 9.5 59 148-210 55-117 (272)
301 PRK14089 ipid-A-disaccharide s 22.5 1E+02 0.0022 34.5 4.4 32 148-179 75-109 (347)
302 cd06292 PBP1_LacI_like_10 Liga 22.3 1.2E+02 0.0027 31.6 4.9 60 148-211 54-119 (273)
303 CHL00019 atpF ATP synthase CF0 22.3 3.7E+02 0.0081 27.0 8.1 65 769-833 74-139 (184)
304 TIGR00315 cdhB CO dehydrogenas 22.1 7.8E+02 0.017 24.4 10.1 56 22-88 5-63 (162)
305 PRK05412 putative nucleotide-b 22.0 83 0.0018 31.0 3.0 80 660-753 51-131 (161)
306 PRK07352 F0F1 ATP synthase sub 22.0 3.9E+02 0.0085 26.6 8.1 70 764-833 64-134 (174)
307 PRK07765 para-aminobenzoate sy 21.8 2.6E+02 0.0055 29.0 6.9 32 149-180 46-84 (214)
308 PRK07649 para-aminobenzoate/an 21.7 2.3E+02 0.005 28.9 6.4 25 59-83 2-26 (195)
309 PF15605 Toxin_52: Putative to 21.7 3.5E+02 0.0076 24.7 6.5 50 774-828 53-102 (103)
310 PRK11009 aphA acid phosphatase 21.7 9.1E+02 0.02 25.5 11.1 37 45-81 119-157 (237)
311 cd06285 PBP1_LacI_like_7 Ligan 21.6 3E+02 0.0066 28.5 7.7 58 148-211 54-111 (265)
312 PF13801 Metal_resist: Heavy-m 21.6 5.8E+02 0.013 22.7 11.3 70 755-828 40-112 (125)
313 cd06317 PBP1_ABC_sugar_binding 21.4 1.5E+02 0.0033 30.8 5.3 35 148-183 55-91 (275)
314 PRK00025 lpxB lipid-A-disaccha 21.1 3E+02 0.0065 30.6 7.9 30 149-178 85-115 (380)
315 cd06304 PBP1_BmpA_like Peripla 21.1 6.7E+02 0.014 26.0 10.2 46 149-194 179-228 (260)
316 cd06272 PBP1_hexuronate_repres 20.9 1.6E+02 0.0035 30.5 5.4 59 148-211 50-108 (261)
317 PF00430 ATP-synt_B: ATP synth 20.7 3.8E+02 0.0082 24.9 7.3 73 762-834 31-104 (132)
318 PRK05748 replicative DNA helic 20.6 9.1E+02 0.02 27.9 11.9 74 18-96 192-271 (448)
319 PF03808 Glyco_tran_WecB: Glyc 20.5 6.9E+02 0.015 24.7 9.5 30 148-178 100-131 (172)
320 PF12614 RRF_GI: Ribosome recy 20.4 3.5E+02 0.0077 25.7 6.6 45 748-792 3-47 (128)
321 PRK13259 regulatory protein Sp 20.3 6.4E+02 0.014 22.7 8.7 76 691-779 5-86 (94)
322 PRK13460 F0F1 ATP synthase sub 20.3 4.5E+02 0.0097 26.1 8.1 61 770-830 67-128 (173)
323 TIGR00215 lpxB lipid-A-disacch 20.2 2.8E+02 0.006 31.4 7.4 29 149-178 89-119 (385)
No 1
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-73 Score=571.82 Aligned_cols=218 Identities=51% Similarity=0.849 Sum_probs=215.5
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||+||+||||++++|||+|+||||+.|||+|||||.+|+.+|+.|++++..++.++|+|||||||++++++|+++|++||
T Consensus 9 lLeAGvHfGhqtr~wnpkm~~fIf~~RngihIIDL~kT~~~l~~A~~~v~~~~~~~g~ILfVgTK~~a~~~V~~~A~r~g 88 (252)
T COG0052 9 LLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLERLREAYKFLRRIAANGGKILFVGTKKQAQEPVKEFAERTG 88 (252)
T ss_pred HHHcCccccccccccCCcccccceeecCCcEEEEHHHHHHHHHHHHHHHHHHHcCCCEEEEEechHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+|||||||+||++++++|++++.+..++ |+.|+|||.+.+.|+.+||+++|||||+|+++||++||+||..
T Consensus 89 ~~yV~~RwLgG~LTN~~ti~~si~rl~~lE~~~~~~-~~~~tKkE~l~l~re~~kL~k~lgGIk~m~~~Pd~l~ViDp~~ 167 (252)
T COG0052 89 AYYVNGRWLGGMLTNFKTIRKSIKRLKELEKMEEDG-FDGLTKKEALMLTRELEKLEKSLGGIKDMKGLPDVLFVIDPRK 167 (252)
T ss_pred CceecCcccCccccCchhHHHHHHHHHHHHHHhhcc-cccccHHHHHHHHHHHHHHHHhhcchhhccCCCCEEEEeCCcH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
|++||+||+++||||||+|||||||+.||||||||||+++|+.|++|+|++||++|+.-
T Consensus 168 e~iAv~EA~klgIPVvAlvDTn~dpd~VD~~IP~Ndda~rsi~Li~~~lA~ai~e~r~~ 226 (252)
T COG0052 168 EKIAVKEANKLGIPVVALVDTNCDPDGVDYVIPGNDDAIRSIALIYWLLARAILEGRGG 226 (252)
T ss_pred hHHHHHHHHHcCCCEEEEecCCCCCccCceeecCCChHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999863
No 2
>PRK12311 rpsB 30S ribosomal protein S2/unknown domain fusion protein; Provisional
Probab=100.00 E-value=1.2e-66 Score=557.07 Aligned_cols=218 Identities=48% Similarity=0.827 Sum_probs=215.9
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||++|+||||++++|||+|+|||||.|||+|||||.+|+.+|++||++|.+++.++|+||||||+++++++|+++|++||
T Consensus 4 Ll~agvH~Gh~~~~wnpkM~~yIyg~R~gihIIDL~kT~~~L~~A~~~i~~~~~~gg~iLfVgTk~~~~~~V~~~A~~~g 83 (326)
T PRK12311 4 LLEAGVHFGHQSHRWNPKMAPYIFGTRNNIHIIDLAQTVPLLHRALQAVSDTVAKGGRVLFVGTKRQAQDAVADAAKRSA 83 (326)
T ss_pred HHhCCeecccCCCCCCCcccCceecccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+|||||||+|+++++++|+.++.+...+.|+.|+|||.+.+.|+.+||+++|+|+++|+++||+|||+||..
T Consensus 84 ~~yV~~RWlgG~LTN~~ti~~si~~l~~l~~~~~~~~~~~~~kke~~~~~r~~~kl~k~l~Gi~~m~~~Pd~viv~d~~~ 163 (326)
T PRK12311 84 QYFVNSRWLGGTLTNWKTISGSIQRLRKLDEVLSSGEANGYTKKERLTLQRERDKLDRALGGIKDMGGLPDLLFVIDTNK 163 (326)
T ss_pred CeeeCCeecCcccCCHHHHHHHHHHHHHHHHHhhcCccccCCHHHHHHHHHHHHHHHHhccchhhcccCCCEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
|++||+||+++||||||||||||||++|||||||||||++|++|++++|+++|++|+.
T Consensus 164 e~~AI~EA~kl~IPvIaivDTn~dp~~IdypIP~NDds~~si~li~~~la~ai~~g~~ 221 (326)
T PRK12311 164 EDIAIQEAQRLGIPVAAIVDTNCDPDGITYPVPGNDDAGRAIALYCDLIARAAIDGIS 221 (326)
T ss_pred chHHHHHHHHcCCCEEEEeeCCCCccccceeecCCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999985
No 3
>TIGR01011 rpsB_bact ribosomal protein S2, bacterial type. TIGR01012 describes the archaeal and cytosolic forms.
Probab=100.00 E-value=1.6e-65 Score=528.56 Aligned_cols=217 Identities=53% Similarity=0.897 Sum_probs=214.8
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
|+++|+||||++++|||+|+|||||+|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|+++|+++|
T Consensus 7 ll~ag~H~Gh~~~~wnp~m~~yIyg~r~g~~IIdL~~T~~~L~~A~~~i~~~~~~~g~iLfV~tk~~~~~~v~~~a~~~~ 86 (225)
T TIGR01011 7 LLEAGVHFGHQTRRWNPKMKPFIFGERNGIHIIDLQKTLQLLKEAYNFVKDVAANGGKILFVGTKKQAKEIIKEEAERCG 86 (225)
T ss_pred HHHcCcccccccCcCCcccccceeeeeCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||.++++++++|++++.+.+++.|+.++|||.+.+.|+.+||+++|+|+++|+++||+|||+||.+
T Consensus 87 ~~yv~~rWlgG~LTN~~~i~~~i~~l~~l~~~~~~~~f~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~vii~d~~~ 166 (225)
T TIGR01011 87 MFYVNQRWLGGMLTNFKTIRKSIKKLKKLEKMEEDGTFDDLTKKEALMLSREKEKLEKSLGGIKDMKKLPDLLFVIDPVK 166 (225)
T ss_pred CcccCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHhccCccccccCCCEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~ 217 (837)
|++|++||.++||||||+|||||||++|||||||||||.+|++|++++|++||++|+
T Consensus 167 ~~~ai~Ea~~l~IP~I~ivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~g~ 223 (225)
T TIGR01011 167 EKIAVAEARKLGIPVVAIVDTNCDPDLVDYPIPGNDDAIRSIRLLTNLIADAVLEGK 223 (225)
T ss_pred cHHHHHHHHHcCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999996
No 4
>PRK05299 rpsB 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=3.6e-65 Score=534.36 Aligned_cols=218 Identities=55% Similarity=0.950 Sum_probs=215.5
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||++|+||||++++|||+|+|||||.|+|+|||||.+|+.+|++||++|+.++.++|+||||||+++++++|+++|++||
T Consensus 9 Ll~agvH~Gh~~~~wnp~m~~yIyg~r~gi~IIdL~kT~~~L~~A~~~i~~~~~~~g~iLfVgTk~~~~~~V~~~A~~~~ 88 (258)
T PRK05299 9 LLEAGVHFGHQTRRWNPKMKPYIFGERNGIHIIDLQKTVPMLDEAYNFVRDVAANGGKILFVGTKKQAQEAIAEEAERCG 88 (258)
T ss_pred HHhcCcccccccCcCCCccccceecccCCeEEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEECcHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||+++++++++|++++.+...+.|+.++|||.+.+.|+++||+++|+|+++|+++||+|||+||..
T Consensus 89 ~~yv~~rWlgG~LTN~~ti~~~i~~l~~l~~~~~~~~~~~~~kke~~~~~k~~~kl~k~~~Gi~~m~~~Pd~iii~d~~~ 168 (258)
T PRK05299 89 MPYVNHRWLGGMLTNFKTIRKSIKRLKELEKMEEDGTFEKLTKKEALMLTRELEKLEKSLGGIKDMGGLPDALFVVDPNK 168 (258)
T ss_pred CeeeCCeecCeeccCHHHHHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHHHHHhccCccccccCCCEEEEeCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
|++|++||.++||||||||||||||++|||||||||||++|++|++++|++||++|+.
T Consensus 169 ~~~ai~Ea~kl~IPiIaivDTn~dp~~IdypIP~Ndds~~si~li~~~l~~ai~~g~~ 226 (258)
T PRK05299 169 EHIAVKEARKLGIPVVAIVDTNCDPDGVDYPIPGNDDAIRSIKLYTSKIADAILEGRQ 226 (258)
T ss_pred cHHHHHHHHHhCCCEEEEeeCCCCCcccceeeecCCchHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999999985
No 5
>CHL00067 rps2 ribosomal protein S2
Probab=100.00 E-value=3.7e-63 Score=512.65 Aligned_cols=217 Identities=43% Similarity=0.726 Sum_probs=214.5
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||++|+||||++++|||+|+|||||.|+|+|||||++|+.+|++||++++.+++++|+||||||+++++++|+++|+++|
T Consensus 13 Ll~a~~h~Gh~~~~~np~m~~yIyg~r~g~~IIdl~~T~~~L~~A~~~i~~i~~~~g~ILfV~t~~~~~~~v~~~a~~~~ 92 (230)
T CHL00067 13 MLEAGVHFGHQTRKWNPKMAPYIYAERNGIHIINLVQTARFLSEACDLVFDAASKGKKFLFVGTKKQAADLVASAAIRAR 92 (230)
T ss_pred HHhcCeEeccCcCcCCCchhhhhhcccCCcEEEcHHHHHHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||.++++++++|++++.....+.|..++|||.+.+.|++.||+++|+|+++|+++||+|||+||..
T Consensus 93 ~~yv~~rWigG~LTN~~~i~~~i~~~~~l~~~~~~~~~~~~~kk~~~~~~~~~~kl~k~~~Gi~~m~~~P~~iiv~d~~~ 172 (230)
T CHL00067 93 CHYVNKRWLGGMLTNWSTTKTRLQKLRDLRMEEKTGLFNRLPKKEAAILKRQLSRLEKYLGGIKYMTKLPDIVIIIDQQE 172 (230)
T ss_pred CcCccCcccCCcccCHHHHHHHHHHHHHHHHHhhccchhcccHhHHHHHHHHHHHHHHhhccccccccCCCEEEEeCCcc
Confidence 99999999999999999999999999999998899999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~ 217 (837)
|++|++||.++||||||||||||||++|||||||||||.+|++|++++|++||.+|+
T Consensus 173 ~~~ai~Ea~~l~IPvIaivDTn~~p~~idypIP~Ndds~~si~li~~~l~~ai~~G~ 229 (230)
T CHL00067 173 EYTALRECRKLGIPTISILDTNCDPDLADIPIPANDDAIASIKLILNKLTTAICEGR 229 (230)
T ss_pred cHHHHHHHHHcCCCEEEEEeCCCCccccceeeecCCchHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999999999999999999999999999999999999996
No 6
>PF00318 Ribosomal_S2: Ribosomal protein S2; InterPro: IPR001865 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal S2 proteins have been shown to belong to a family that includes 40S ribosomal subunit 40kDa proteins, putative laminin-binding proteins, NAB-1 protein and 29.3kDa protein from Haloarcula marismortui [, ]. The laminin-receptor proteins are thus predicted to be the eukaryotic homologue of the eubacterial S2 risosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2QNH_c 3MR8_B 3PYS_B 3MS0_B 3PYN_B 1VOZ_B 2OW8_c 3PYQ_B 3D5C_B 3PYU_B ....
Probab=100.00 E-value=1.1e-58 Score=475.96 Aligned_cols=211 Identities=49% Similarity=0.796 Sum_probs=202.2
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
|+++|+|+||++++|||+|+|||||.|+|+|||||++|+.+|++|+++|.+++.++|+||||||+++++++|+++|+++|
T Consensus 1 Ll~a~~HlG~~~~~~n~~m~~yI~g~r~g~~IidL~kT~~~L~~A~~~i~~i~~~~~~ILfV~t~~~~~~~v~~~a~~~~ 80 (211)
T PF00318_consen 1 LLKAGVHLGHKKSRWNPKMKPYIYGKRNGIHIIDLEKTLEQLRKALKFIKSIAKNGGKILFVGTKPQASKIVKKFAKRTG 80 (211)
T ss_dssp HHHHTTTSCBSSSSSSGGGGGGEEEEETTEEEETHHHHHHHHHHHHHHHHHHHTTTGGEEEEECSTTHHHHHHHHHHHHT
T ss_pred CcccceecCCCcCCCCCCcccceecccCceEEEEHHHHHHHHHHHHHHHHHhhcCCCeEEEEEcchHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++|+++||+||+||||.++++++.+|++++.... ++||+...+.++++|++++|+|+++|+++||+||++||.+
T Consensus 81 ~~yi~~rWi~G~LTN~~~i~~~i~~l~~l~~~~~------~~kk~~~~~~~~~~kl~k~~~Gi~~l~~~P~~vii~~~~~ 154 (211)
T PF00318_consen 81 SFYINERWIGGTLTNWKTIKKSIKKLKKLEKLFK------LTKKENAKLKKKYQKLKKYFGGIKNLKKLPDLVIILDPNK 154 (211)
T ss_dssp CEEEESS-STTTTTTTTHCHHHHHHHHHHHHHTT------SSHHHHHHHHHHHHHHHHHCTTTTTCSSSBSEEEESSTTT
T ss_pred CCccCceecCcccCcHHHHHHHHHHHHHHHHhhh------ccchhhhhhHHHHHHhhhhhHhhhcccccCcEEEEecccc
Confidence 9999999999999999999999999999876554 8999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~ 217 (837)
|++|++||.++||||||+|||||||+.+||||||||||..|++|++++|++||++|+
T Consensus 155 ~~~~i~Ea~~l~IP~i~i~Dtn~~~~~i~ypIp~N~~s~~si~~i~~~l~~ai~~g~ 211 (211)
T PF00318_consen 155 NKNAIREANKLNIPTIAIVDTNCNPSLIDYPIPANDDSIKSIYLILNLLAKAILEGK 211 (211)
T ss_dssp THHHHHHHHHTTS-EEEEESTTS-GTTSSEEEES-SSSHHHHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHhcCceEEEeecCCCCccccceEeecCCccHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999986
No 7
>COG0233 Frr Ribosome recycling factor [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=2.8e-56 Score=431.06 Aligned_cols=184 Identities=47% Similarity=0.738 Sum_probs=181.8
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|.|+|||.++||+|||+||+|++|+|+|+|||++++++|++|
T Consensus 4 ~~~i~~~~e~kM~k~~e~l~~~l~~iRTGRanp~lld~i~VeyYG~~tPl~qvAsIsvpe~r~l~I~p~Dks~~~~Ieka 83 (187)
T COG0233 4 INEILKDAEEKMEKALEALKNELSKIRTGRANPSLLDRITVEYYGSPTPLNQLASISVPEARTLVIKPFDKSMVKAIEKA 83 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHhcceeeeecCCCCcHHHHhhccCCCcceEEeecCccchHHHHHHH
Confidence 56889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|+.|||||||.+||+.|||++|+||+|||++|+|.+|+++|++|++||||||++++++||+.|++.||||+.++++++||
T Consensus 84 I~~snLglnP~~dG~~IRv~~P~lTeErRkelvK~~k~~~EeakvaiRniRrda~d~iKK~~K~~~isEDe~k~~e~~iQ 163 (187)
T COG0233 84 ILASNLGLNPNNDGNVIRVPLPPLTEERRKELVKVAKKYAEEAKVAVRNIRRDANDKIKKLEKDKEISEDEVKKAEEEIQ 163 (187)
T ss_pred HHHcCCCCCcCcCCCeEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||++++.||||||+|
T Consensus 164 KlTd~yi~~iD~~~~~KEkEim~v 187 (187)
T COG0233 164 KLTDEYIKKIDELLKDKEKEIMEV 187 (187)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 8
>cd01425 RPS2 Ribosomal protein S2 (RPS2), involved in formation of the translation initiation complex, where it might contact the messenger RNA and several components of the ribosome. It has been shown that in Escherichia coli RPS2 is essential for the binding of ribosomal protein S1 to the 30s ribosomal subunit. In humans, most likely in all vertebrates, and perhaps in all metazoans, the protein also functions as the 67 kDa laminin receptor (LAMR1 or 67LR), which is formed from a 37 kDa precursor, and is overexpressed in many tumors. 67LR is a cell surface receptor which interacts with a variety of ligands, laminin-1 and others. It is assumed that the ligand interactions are mediated via the conserved C-terminus, which becomes extracellular as the protein undergoes conformational changes which are not well understood. Specifically, a conserved palindromic motif, LMWWML, may participate in the interactions. 67LR plays essential roles in the adhesion of cells to the basement membrane an
Probab=100.00 E-value=2.3e-56 Score=453.05 Aligned_cols=193 Identities=50% Similarity=0.818 Sum_probs=187.1
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
|+++|+|+||++++|||+|+|||||+|+|+|||||++|+.+|++|++++.+++.++|+||||||+++++++|+++|+++|
T Consensus 1 ll~ag~h~G~~~~~wnp~m~~yiyg~r~~~~Iidl~~T~~~L~~A~~~i~~i~~~~g~iLfV~t~~~~~~~v~~~a~~~~ 80 (193)
T cd01425 1 LLEAGVHLGHKTRRWNPKMKPYIYGERNGIHIIDLEKTLEKLRLALNFIANIAAKGGKILFVGTKPQAQRAVKKFAERTG 80 (193)
T ss_pred CCccceEeCCCcCCCCccchhheecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++|+++||+||+||||.++++++.++++++. .|++++|+|+++|.++||+||++||..
T Consensus 81 ~~~i~~rw~~G~LTN~~~~~~~~~~~~~~~~----------------------~~~~k~~~g~~~~~~~Pdlviv~~~~~ 138 (193)
T cd01425 81 SFYVNGRWLGGTLTNWKTIRKSIKRLKKLEK----------------------EKLEKNLGGIKDMFRLPDLVIVLDPRK 138 (193)
T ss_pred CeeecCeecCCcCCCHHHHHHHHHHHHHHHH----------------------HHHHHhcccccccccCCCEEEEeCCcc
Confidence 9999999999999999999999998877532 678999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLD 215 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~ 215 (837)
|++|++||.++||||||+|||||||++|||||||||||.+|++|++++|++|+++
T Consensus 139 ~~~ai~Ea~~l~IP~I~i~Dtn~~~~~i~ypIP~Nd~s~~si~li~~~l~~ai~~ 193 (193)
T cd01425 139 EHQAIREASKLGIPVIAIVDTNCDPDLIDYPIPANDDSIRSIALILWLLARAILE 193 (193)
T ss_pred chHHHHHHHHcCCCEEEEecCCCCCccceEEeecCCchHHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999999864
No 9
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=5.9e-56 Score=457.18 Aligned_cols=221 Identities=43% Similarity=0.618 Sum_probs=205.3
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEe--CCEEEEEEEecCCch
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDF 292 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~--~~~g~iveln~etdf 292 (837)
...+||+||++||++|||||+||.|+|||+|+|++|||++|+++|+||++|+|+||+|.+|++ ++.|+|||+||||||
T Consensus 5 ta~~VKeLRe~TgAGMmdCKkAL~E~~Gd~EkAie~LR~kG~akA~KKa~R~AaEGli~~~~~~~~~~av~vEvN~ETDF 84 (296)
T COG0264 5 TAALVKELREKTGAGMMDCKKALEEANGDIEKAIEWLREKGIAKAAKKAGRIAAEGLIAAKVDGDGKKAVLVEVNCETDF 84 (296)
T ss_pred cHHHHHHHHHHhCCcHHHHHHHHHHcCCCHHHHHHHHHHhchHhhhhhcCcchhcceEEEEEcCCCcEEEEEEEeccccc
Confidence 456899999999999999999999999999999999999999999999999999999999996 569999999999999
Q ss_pred hccchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCC-eEEEEeeC-Ce
Q psy13351 293 VAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN-NLISYLHD-NK 370 (837)
Q Consensus 293 va~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~-~i~~Y~H~-~~ 370 (837)
||+|+.|++|+++|+.++++..|.+++++...++.+ +.||++.+.++++++||||++|||..++.+. .+++|+|+ ||
T Consensus 85 VAkN~~F~~l~~~ia~~~l~~~~~~ve~l~~~~~~~-~~tv~e~~~~~~AkIGENi~lRR~~~~~~~~~~v~~Y~H~~gr 163 (296)
T COG0264 85 VAKNAEFQELANKIAKAALEKKPADVEELKAAFEPG-GKTVEEEIAALIAKIGENISLRRFAVLEAGDGVVGSYLHGNGR 163 (296)
T ss_pred eeCChhHHHHHHHHHHHHHHhCcccHHHHHhhhccc-CccHHHHHHHHHHHhccceeEEEEEEeecCcccEEEEEeCCCc
Confidence 999999999999999999999999999999888864 6799999999999999999999999999877 59999999 79
Q ss_pred EEEEEEecC--CChhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccCCCccccccchh
Q psy13351 371 IGVIVEYNG--DNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIK 442 (837)
Q Consensus 371 ~~~~v~~~~--~~~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g~~~~i~~~~i~ 442 (837)
|||||.+++ ..+.+|+++||||||++|.||++++||++++++|++++..++ ...|+|..+.+++++
T Consensus 164 iGVlv~~~~~~~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~------~~~gKP~~i~eKiVe 231 (296)
T COG0264 164 IGVLVALKGGAADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQL------KAEGKPENIVEKIVE 231 (296)
T ss_pred EEEEEEEeccchHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHH------HhcCChHHHHHHHHh
Confidence 999999998 566899999999999999999999999999999999988875 234788776666544
No 10
>TIGR01012 Sa_S2_E_A ribosomal protein Sa(cytosolic)/S2(archaeal). TIGR01011 describes the related protein of organelles and bacteria.
Probab=100.00 E-value=3e-54 Score=429.95 Aligned_cols=168 Identities=24% Similarity=0.357 Sum_probs=161.0
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ .|||+|+|||||+| ||+|||||++|+.+|++|++++.+++ +|+||||||+++++.+|+++|++|
T Consensus 9 ll~agvH~Gh~--~~np~M~~yI~~~r~~gi~IIdL~kT~~~L~~A~~~i~~i~--~~~ILfVgtk~~~~~~V~~~A~~~ 84 (196)
T TIGR01012 9 YLAAGVHIGTQ--NKTKDMEKFIYKVRSDGLYVLDLRKTDERLRVAAKFLVRIE--PEDILVVSARIYGQKPVLKFAKVT 84 (196)
T ss_pred HHhCCeecCCC--cCCCCCccceeeecCCCCEEEcHHHHHHHHHHHHHHHHHhh--CCeEEEEecCHHHHHHHHHHHHHh
Confidence 68999999999 69999999999999 79999999999999999999999997 999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++|+++||+||+||||.+- .| ++||+|||+||.
T Consensus 85 g~~~v~~RWlgGtLTN~~~~-----------------~~-----------------------------~~Pdlliv~dp~ 118 (196)
T TIGR01012 85 GARAIAGRFTPGTFTNPMQK-----------------AF-----------------------------REPEVVVVTDPR 118 (196)
T ss_pred CCceECCeeCCCCCCCcccc-----------------cc-----------------------------CCCCEEEEECCc
Confidence 99999999999999999730 01 599999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
.|++||+||.++||||||||||||||++|||||||||||.+|++|++|+|+++|++++.
T Consensus 119 ~~~~Av~EA~~l~IP~Iai~DTn~dp~~vdypIP~Ndds~~Si~li~~lla~ail~~~g 177 (196)
T TIGR01012 119 ADHQALKEASEVGIPIVALCDTDNPLRYVDLVIPTNNKGRHSLALIYWLLAREILRMRG 177 (196)
T ss_pred cccHHHHHHHHcCCCEEEEeeCCCCCccCCEEECCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999985
No 11
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=100.00 E-value=4.3e-53 Score=446.49 Aligned_cols=218 Identities=37% Similarity=0.542 Sum_probs=199.3
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEeCCEEEEEEEecCCchhc
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 294 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~~~~g~iveln~etdfva 294 (837)
...++|+||++||+||++||+||.++|||+|+|++|||++|+++|+||++|.|+||+|++|++++.|+||||||||||||
T Consensus 4 sa~~IK~LRe~Tgagm~dCKkAL~e~~gDiekAi~~LRkkG~akA~Kk~~R~a~EG~V~~~~~~~~~~ivElncETDFVA 83 (290)
T TIGR00116 4 TAQLVKELRERTGAGMMDCKKALTEANGDFEKAIKNLRESGIAKAAKKADRVAAEGVIVLKSDGNKAVIVEVNSETDFVA 83 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhHHHHhcccccCCcEEEEEEcCCEEEEEEEecCCcccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeC-CeEEEEeeC-CeEE
Q psy13351 295 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTN-NNLISYLHD-NKIG 372 (837)
Q Consensus 295 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g-~~i~~Y~H~-~~~~ 372 (837)
||+.|++|+++|++++++.++.+++++.+..+. ++.|| |.+.+.++++||||+|+||.++..+ +.+++|+|+ ||||
T Consensus 84 rne~F~~l~~~ia~~~~~~~~~~~e~l~~~~~~-~~~tv-d~i~~~~a~iGEnI~lrR~~~~~~~~~~v~~Y~H~~gkig 161 (290)
T TIGR00116 84 KNAGFKEFANKLLDELKANKITTLEELQAQELE-NREKV-EYLAALAAKIGENINLRRVAVLEGDSNVIGSYLHAGARIG 161 (290)
T ss_pred CChHHHHHHHHHHHHHHhcCCCCHHHHhhcccc-CCCcH-HHHHHHHHHhccceEEEEEEEEecCCCcEEEEEcCCCcEE
Confidence 999999999999999999999999998887664 45699 9999999999999999999999853 479999996 6999
Q ss_pred EEEEecCC-ChhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccCCCccccccc
Q psy13351 373 VIVEYNGD-NESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 373 ~~v~~~~~-~~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g~~~~i~~~~ 440 (837)
+||.+++. ++++|++||||||||+|.||++++||++++++|++++..++.. +|+|..+.+++
T Consensus 162 vlv~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~vie~Erei~~~~~~~------~gKP~~i~eKI 224 (290)
T TIGR00116 162 VLVALKGKADEELAKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTDQAEL------SGKPKEIAEKM 224 (290)
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCccCchhhCCHHHHHHHHHHHHHHHHh------cCCcHHHHHHH
Confidence 99999985 4578999999999999999999999999999999998888533 47886555544
No 12
>PRK09377 tsf elongation factor Ts; Provisional
Probab=100.00 E-value=5e-53 Score=446.05 Aligned_cols=218 Identities=42% Similarity=0.611 Sum_probs=201.7
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEeCCEEEEEEEecCCchhc
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 294 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~~~~g~iveln~etdfva 294 (837)
...++|+||++||+||++||+||.++|||+|+|++|||++|.++|+||++|.|+||+|+++++++.|+||||||||||||
T Consensus 5 s~~~IK~LR~~Tgagm~dCKkAL~e~~gD~ekAi~~Lrk~G~akA~Kk~~R~a~EG~I~~~~~~~~~~~vElncETDFVA 84 (290)
T PRK09377 5 TAALVKELRERTGAGMMDCKKALTEADGDIEKAIEWLRKKGLAKAAKKAGRVAAEGLVAAKVDGNKGVLVEVNSETDFVA 84 (290)
T ss_pred CHHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhchhhHHHhcCccccceEEEEEeCCCEEEEEEEecCCcccc
Confidence 34578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEee-CCeEEEEeeC-CeEE
Q psy13351 295 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKT-NNNLISYLHD-NKIG 372 (837)
Q Consensus 295 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~-g~~i~~Y~H~-~~~~ 372 (837)
||+.|++|+++|+.++++..|.+++++.+..+ ++.||+|.+.+.++++||||+|+||.+++. |+.+++|+|+ ||||
T Consensus 85 rne~F~~l~~~i~~~~l~~~~~~~e~ll~~~~--~g~tv~d~i~~~~~~iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkig 162 (290)
T PRK09377 85 KNEDFQALANEVAEAALAAKPADVEALLALKL--DGGTVEEARTELIAKIGENISLRRFARLEKDGGVVGSYLHGGGRIG 162 (290)
T ss_pred CChHHHHHHHHHHHHHHhcCCCCHHHHHhccc--cCCcHHHHHHHHHHHhcCceEEEEEEEEeecCCEEEEEEcCCCcEE
Confidence 99999999999999999999999999877666 357999999999999999999999999974 6789999998 5999
Q ss_pred EEEEecCCChhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccCCCccccccc
Q psy13351 373 VIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 373 ~~v~~~~~~~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g~~~~i~~~~ 440 (837)
+||.+++.++++|++||||||||+|.||++++||++++++|++++..++.. .|+|..+.+++
T Consensus 163 vlV~~~~~~~~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~E~~i~~~~~~~------~gKP~~i~eKI 224 (290)
T PRK09377 163 VLVALEGGDEELAKDIAMHIAAMNPEYLSREDVPAEVVEKEREIAKEQAKE------EGKPEEIVEKI 224 (290)
T ss_pred EEEEEccCcHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHHHh------cCChHHHHHHH
Confidence 999999988889999999999999999999999999999999998888633 37776555544
No 13
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=100.00 E-value=1.5e-52 Score=417.62 Aligned_cols=183 Identities=48% Similarity=0.729 Sum_probs=180.4
Q ss_pred hhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHH
Q psy13351 655 SDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAI 734 (837)
Q Consensus 655 ~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI 734 (837)
++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+++|+|++++|++|+|+|||++++++|++||
T Consensus 3 ~~~~~~~~~~m~kai~~l~~~l~~irtGra~p~lld~I~V~~yg~~~pL~~lA~Isv~~~~~l~I~p~D~~~i~~I~kAI 82 (185)
T PRK00083 3 NEILKDAEERMEKAVEALKRELAKIRTGRANPSLLDGIKVDYYGSPTPLNQVASISVPEARTLLIQPWDKSMLKAIEKAI 82 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHcCCeEEEECCCCccHHHceeeecCCCCEEEEEeCCHhHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHH
Q psy13351 735 NEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQK 814 (837)
Q Consensus 735 ~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~ 814 (837)
++||||+||+.||++||||||+||+|+|++++|.||+++|++|++||||||++++++|+++|++.+|||+.++++++||+
T Consensus 83 ~~s~lgl~P~~dg~~Iri~iP~lT~E~R~elvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~e~eiQk 162 (185)
T PRK00083 83 RASDLGLNPSNDGTVIRLPIPPLTEERRKELVKQVKKEAEEAKVAIRNIRRDANDKLKKLEKDKEISEDELKRAEDEIQK 162 (185)
T ss_pred HHCCCCCCcccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 815 LTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 815 l~~~~~~~id~~~~~kekei~~~ 837 (837)
+||+|++++|+++++||||||+|
T Consensus 163 ltd~~i~~id~~~~~Kekeim~v 185 (185)
T PRK00083 163 LTDKYIKKIDELLAAKEKEIMEV 185 (185)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999986
No 14
>PRK04020 rps2P 30S ribosomal protein S2; Provisional
Probab=100.00 E-value=3.2e-53 Score=425.14 Aligned_cols=169 Identities=26% Similarity=0.400 Sum_probs=160.1
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ .|||+|+|||||.| +|+|||||++|+.+|++||++|..+ ++|+||||||+++++.+|+++|+++
T Consensus 15 ll~ag~H~Gh~--~~np~Mk~yIyg~r~~gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ILfVgTk~~~~~~v~k~A~~~ 90 (204)
T PRK04020 15 YLAAGVHIGTQ--QKTKDMERFIYRVRPDGLYVLDVRKTDERIRIAAKFLSRY--EPEKILVVSSRQYGQKPVQKFAEVV 90 (204)
T ss_pred HHhCCeEcCCC--cCCCCCcccEeeecCCCCEEEcHHHHHHHHHHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 68999999999 47999999999999 6999999999999999999999997 6899999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++|+++||+||+||||+. + ++ .+||+||++||.
T Consensus 91 g~~~v~~RWlgG~LTN~~~-----~---------------------------------~~--------~~Pdliiv~dp~ 124 (204)
T PRK04020 91 GAKAITGRFIPGTLTNPSL-----K---------------------------------GY--------IEPDVVVVTDPR 124 (204)
T ss_pred CCeeecCccCCCcCcCcch-----h---------------------------------cc--------CCCCEEEEECCc
Confidence 9999999999999999972 0 00 399999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||.++||||||||||||||++|||||||||||++|++|++|+|+++|++++..
T Consensus 125 ~~~~AI~EA~kl~IP~IaivDTn~dp~~VdypIP~Ndds~~SI~li~~ll~~aIl~~kg~ 184 (204)
T PRK04020 125 GDAQAVKEAIEVGIPVVALCDTDNLTSNVDLVIPTNNKGRKALALVYWLLAREILRERGE 184 (204)
T ss_pred ccHHHHHHHHHhCCCEEEEEeCCCCcccCceeECCCCchHHHHHHHHHHHHHHHHHhhCc
Confidence 999999999999999999999999999999999999999999999999999999999843
No 15
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=100.00 E-value=2.4e-51 Score=405.67 Aligned_cols=175 Identities=46% Similarity=0.731 Sum_probs=173.2
Q ss_pred HhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCcc
Q psy13351 663 QKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLN 742 (837)
Q Consensus 663 ~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~ 742 (837)
++|++++++|+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|.|+|||++++++|++||++||||+|
T Consensus 2 ~~M~k~i~~~~~~l~~irtGra~p~ild~I~V~~yg~~~pL~~lA~vsv~~~~~l~I~p~D~~~~~~I~kAI~~s~lgln 81 (176)
T TIGR00496 2 ERMDKSIQALKRELSKIRTGRANPSLLDRILVEYYGAPTPLRQLASVTVPDARTLVIQPFDKSNINAIEKAIQRSDLGLN 81 (176)
T ss_pred chHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEecCChhhHHHHHHHHHHCCCCCC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHH
Q psy13351 743 PTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILE 822 (837)
Q Consensus 743 p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~ 822 (837)
|+.||++||||||+||+|+|++++|.+|+.+|++|++||||||++++++|+++|++.+|||+.++++++||++||+|+++
T Consensus 82 P~~dg~~Iri~iP~lT~E~RkelvK~~k~~~E~aKv~iRniRr~~~~~iKk~~k~~~iseD~~k~~~~~iQkltd~~i~~ 161 (176)
T TIGR00496 82 PNNDGSVIRVNFPPLTEERRKELVKHAKKIAEQAKVAVRNVRRDANDKVKKLEKDKEISEDEERRLQEEIQKLTDEYIKK 161 (176)
T ss_pred cccCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcC
Q psy13351 823 INQLLINKEKEILTL 837 (837)
Q Consensus 823 id~~~~~kekei~~~ 837 (837)
+|+++++||||||+|
T Consensus 162 id~~~~~Kekeim~v 176 (176)
T TIGR00496 162 IDEILKDKEKELMEV 176 (176)
T ss_pred HHHHHHHHHHHHhcC
Confidence 999999999999986
No 16
>PTZ00254 40S ribosomal protein SA; Provisional
Probab=100.00 E-value=4.5e-52 Score=425.43 Aligned_cols=169 Identities=25% Similarity=0.364 Sum_probs=160.8
Q ss_pred CceeceeeccccCCCCCCCcCcccce-eCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGH-RNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~-r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||++|+||||+ +|||+|+|||||+ |+|+|||||.+|+.+|++|+++|..+ .+++.|||||||++++.+|+++|.++
T Consensus 18 lL~agvHlG~~--~~np~M~~YIy~~r~dGi~IIdL~kT~~~L~~Aa~~i~~i-~~~~~Il~Vstr~~~~~~V~k~A~~t 94 (249)
T PTZ00254 18 MLACKCHIGTK--NLENAMKKYVYKRTKEGVHIINLAKTWEKLKLAARVIAAI-ENPADVVVVSSRPYGQRAVLKFAQYT 94 (249)
T ss_pred HHhcCceeccC--cCCCcccccEecccCCCCEEEcHHHHHHHHHHHHHHHHHH-hCCCcEEEEEcCHHHHHHHHHHHHHh
Confidence 68999999985 8999999999997 59999999999999999999999998 67999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+||+||||.+- .| ++||+|||+||.
T Consensus 95 g~~~i~~Rw~pGtlTN~~~~-----------------~f-----------------------------~~P~llIV~Dp~ 128 (249)
T PTZ00254 95 GASAIAGRFTPGTFTNQIQK-----------------KF-----------------------------MEPRLLIVTDPR 128 (249)
T ss_pred CCeEECCcccCCCCCCcccc-----------------cc-----------------------------CCCCEEEEeCCC
Confidence 99999999999999999640 11 599999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
.|++||+||+++||||||||||||||++|||||||||||++||+|++|+|+++|+++++
T Consensus 129 ~d~qAI~EA~~lnIPvIal~DTds~p~~VDy~IP~Ndds~~SI~li~~lLar~Vl~~rG 187 (249)
T PTZ00254 129 TDHQAIREASYVNIPVIALCDTDSPLEYVDIAIPCNNRGKESIALMYWLLAREVLRLRG 187 (249)
T ss_pred cchHHHHHHHHhCCCEEEEecCCCCcccCceeeCCCCchHHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999999999999986
No 17
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=100.00 E-value=5.4e-50 Score=399.02 Aligned_cols=178 Identities=49% Similarity=0.724 Sum_probs=175.7
Q ss_pred hhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhc
Q psy13351 658 KKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEA 737 (837)
Q Consensus 658 ~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s 737 (837)
+.+++++|++++++|+++|+++|+||+||++||+|+|+|||+++||+++|+|+++++++|+|+|||++++++|++||++|
T Consensus 2 ~~~~~~~m~k~i~~~~~~l~~irtGrasp~lld~I~V~~yg~~~pL~~lA~Vsv~~~~~l~I~p~D~~~i~~I~kAI~~s 81 (179)
T cd00520 2 LKEAKEKMEKSLEALKEELNKIRTGRANPALLDSITVEYYGAPTPLNQLASISVPEPRTIVINPFDKSAIKAIEKAILNS 81 (179)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEeecchhhHHHHHHHHHHC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHH
Q psy13351 738 NLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTD 817 (837)
Q Consensus 738 ~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~ 817 (837)
|||+||++||++|+||||+||+|+|++++|.||+.+|++|++|||+||++++++|++++++.+|||+.++++++||++||
T Consensus 82 ~l~l~P~~dg~~iri~iP~lT~E~R~~lvK~~k~~~E~~Kv~iRniR~~~~~~lKk~~k~~~iseD~~k~~~~~iqkltd 161 (179)
T cd00520 82 DLGLNPNNDGAVIRVNLPPLTEERRKELVKDAKKIAEEAKVAIRNIRRDANDKIKKLEKEKEISEDEVKKAEEDLQKLTD 161 (179)
T ss_pred CCCCCcCcCCCEEEecCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhh
Q psy13351 818 KFILEINQLLINKEKEIL 835 (837)
Q Consensus 818 ~~~~~id~~~~~kekei~ 835 (837)
+|++++|++++.||||||
T Consensus 162 ~~i~~id~~~~~Kekeim 179 (179)
T cd00520 162 EYIKKIDELLKSKEKELL 179 (179)
T ss_pred HHHHHHHHHHHHHHHhhC
Confidence 999999999999999997
No 18
>KOG0832|consensus
Probab=100.00 E-value=4e-51 Score=401.70 Aligned_cols=190 Identities=35% Similarity=0.634 Sum_probs=172.0
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
|+.||+||||+++.|||.|+|||||+|+|+|||||++|..+|++|++|+.+++..+|.||||||++.....|..+|++++
T Consensus 53 L~~agvHlGh~t~~wn~~m~pyiyG~R~Gi~IIdLdqT~~~Lr~A~~fVa~vA~r~GiILFv~tn~~~~~~ve~aA~r~~ 132 (251)
T KOG0832|consen 53 LFNAGVHLGHKTGKWNPRMKPYIYGKRLGIHIIDLDQTASYLRRALNFVAHVAHRGGIILFVGTNNGFKDLVERAARRAG 132 (251)
T ss_pred HHhccccccccccccCcccchhhcccccCcEEEecHHHHHHHHHHHHHHHHHHhcCCeEEEEecCcchHHHHHHHHHHhc
Confidence 67899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++|++.+|.||+||||.++...+.+ .|..++++- +| ..+.-||+|||+||.+
T Consensus 133 gy~~~~~w~~G~lTN~~~l~g~~~~-----------~~~~~pd~~-------------~f----~~t~~~D~vvvln~~e 184 (251)
T KOG0832|consen 133 GYSHNRKWLGGLLTNARELFGALVR-----------KFLSLPDAL-------------CF----LPTLTPDLVVVLNPEE 184 (251)
T ss_pred Cceeeeeeccceeecchhhcccccc-----------cccCCCcce-------------ee----cccCCcceeEecCccc
Confidence 9999999999999999987544332 222222211 11 1234679999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
++.|+.||.+++||||||+||||+|+++||||||||||+.|+.|+++++..|+.+|+.
T Consensus 185 ~~sAilEA~K~~IPTIgIVDtN~~P~liTYpVPaNDDs~~sv~f~~~l~k~ai~~g~~ 242 (251)
T KOG0832|consen 185 NHSAILEAAKMAIPTIGIVDTNCNPELITYPVPANDDSPASVEFILNLLKRAIARGKQ 242 (251)
T ss_pred ccHHHHHHHHhCCCeEEEecCCCCccceeeccCCCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999974
No 19
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=100.00 E-value=2.7e-44 Score=355.46 Aligned_cols=165 Identities=48% Similarity=0.713 Sum_probs=160.6
Q ss_pred HHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCccceecCCee
Q psy13351 671 ILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNII 750 (837)
Q Consensus 671 ~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~~~~~i 750 (837)
||+++|+++|+||+||++||+|+|++||+.+||+++|+|+++++++|+|+|||++++++|++||++|+||+||+.||+.|
T Consensus 1 ~~~~~l~~ir~gr~~p~~ld~i~V~~~g~~~~L~~lA~V~~~~~~~l~I~~~d~~~i~~I~kAI~~s~l~l~p~~d~~~i 80 (165)
T PF01765_consen 1 HFKEELSKIRTGRANPAILDNIKVEYYGSKVPLNELAQVSVKDPRTLVITPYDPSLIKAIEKAIQKSNLNLNPQNDGNTI 80 (165)
T ss_dssp HHHHHHHTSSSSSSSGGGGTTSEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTHHHHHHHHHHHTTSSSEEEEETTEE
T ss_pred ChHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEeccccchHHHHHHHHHCCCCCCcccCCcEE
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 751 YVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830 (837)
Q Consensus 751 ~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 830 (837)
+|+||+||+|+|++++|.||+.+|+||++||++|+++++++|++++++.+|+|+.++++++||++||+|++++|++++.|
T Consensus 81 ~v~iP~~T~E~R~~l~k~~k~~~E~~k~~iR~iR~~~~~~lkk~~~~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 160 (165)
T PF01765_consen 81 RVPIPPPTEERRKELVKQAKKIAEEAKVSIRNIRRDAMKKLKKLKKSKEISEDDIKKLEKEIQKLTDKYIKKIDELLKKK 160 (165)
T ss_dssp EEE--SSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhhhh
Q psy13351 831 EKEIL 835 (837)
Q Consensus 831 ekei~ 835 (837)
|||||
T Consensus 161 ekell 165 (165)
T PF01765_consen 161 EKELL 165 (165)
T ss_dssp HHHHC
T ss_pred HHhhC
Confidence 99998
No 20
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=100.00 E-value=5.7e-41 Score=336.63 Aligned_cols=146 Identities=46% Similarity=0.636 Sum_probs=139.4
Q ss_pred ccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEe--CCEEEEEEEecCCchh
Q psy13351 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFV 293 (837)
Q Consensus 216 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~--~~~g~iveln~etdfv 293 (837)
..++|+||++||+||++||+||.+++||+|+|++|||++|+++|+||++|.|+||+|++|+| ++.|+|||||||||||
T Consensus 5 a~~ik~LR~~tga~~~~ck~AL~~~~gd~~~A~~~lr~~g~~~a~kk~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFV 84 (198)
T PRK12332 5 AKLVKELREKTGAGMMDCKKALEEANGDMEKAIEWLREKGLAKAAKKAGRVAAEGLVGSYIHTGGRIGVLVELNCETDFV 84 (198)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhccccccCceEEEEEecCCCEEEEEEEeccCCcc
Confidence 45789999999999999999999999999999999999999999999999999999999999 8999999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhcCCCChhh----------------------------------------------hhccccc
Q psy13351 294 AKNNEFIKFSKKIAKLITENTPINLDQ----------------------------------------------LNNLKIK 327 (837)
Q Consensus 294 a~n~~f~~la~~ia~~iaa~~p~~~~~----------------------------------------------l~q~~i~ 327 (837)
|||+.|++|+++||||||+++|.+++. +.|+|+.
T Consensus 85 a~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~~~gKP~~i~ekiv~Grl~K~~~E~~Ll~Q~fv~ 164 (198)
T PRK12332 85 ARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQALNEGKPENIVEKIVEGRIEKFYKEVCLLEQPFIK 164 (198)
T ss_pred ccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhHHHHHHHhhhhhhcCcccC
Confidence 999999999999999999999976543 5789999
Q ss_pred CCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCe
Q psy13351 328 NNLLTVDEKCKELISRIGENIKIRRFKLFKTNNN 361 (837)
Q Consensus 328 d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~ 361 (837)
|++.||+|++.+.++++||||+|+||.||++|||
T Consensus 165 d~~~TV~e~l~e~~a~iGEnI~V~rF~R~evGeg 198 (198)
T PRK12332 165 DPSKTVEDLIKEAIAKIGENIVVRRFARFELGEG 198 (198)
T ss_pred CCCccHHHHHHHHHHHhCCCeEEEEEEEEEcCCC
Confidence 8889999999999999999999999999999985
No 21
>CHL00098 tsf elongation factor Ts
Probab=100.00 E-value=4e-40 Score=330.13 Aligned_cols=147 Identities=45% Similarity=0.590 Sum_probs=140.2
Q ss_pred cchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEe--CCEEEEEEEecCCchhc
Q psy13351 217 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFVA 294 (837)
Q Consensus 217 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~--~~~g~iveln~etdfva 294 (837)
.++|+||++||+||++||+||.++|||+|+|++|||++|+++|+||++|.|++|+|++|+| +++|||||+||||||||
T Consensus 3 ~~ik~LR~~Tgag~~dck~AL~e~~gd~~~A~~~Lr~~g~~~a~kk~~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfVA 82 (200)
T CHL00098 3 ELVKELRDKTGAGMMDCKKALQEANGDFEKALESLRQKGLASANKKSTRITTEGLIESYIHTGGKLGVLVEINCETDFVA 82 (200)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHhhhhHHHHhhccccccCeEEEEEecCCCEEEEEEEecCccccc
Confidence 4689999999999999999999999999999999999999999999999999999999999 79999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhc-CCCChhh----------------------------------------------hhccccc
Q psy13351 295 KNNEFIKFSKKIAKLITEN-TPINLDQ----------------------------------------------LNNLKIK 327 (837)
Q Consensus 295 ~n~~f~~la~~ia~~iaa~-~p~~~~~----------------------------------------------l~q~~i~ 327 (837)
||+.|++||++|||||||+ +|.+++. ++|+|++
T Consensus 83 rn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~~~~gKp~~i~ekiv~Grl~k~~~e~~LLeQ~fv~ 162 (200)
T CHL00098 83 RREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKDDLQNKPEEIKEKIVEGRIKKRLKELSLLDQPFIR 162 (200)
T ss_pred ccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHhhHHHHHHHHhhhhcCcccC
Confidence 9999999999999999999 6876543 7899999
Q ss_pred CCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 328 NNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 328 d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
|++.||+|++++.++++||||+|+||.||++|||+.
T Consensus 163 D~~~TV~~~l~e~~akiGeni~V~rF~R~~vGegie 198 (200)
T CHL00098 163 DQSITVEELIKQNIAKLGENIQIRRFARFTLGEGEE 198 (200)
T ss_pred CCCccHHHHHHHHHHhcCCCcEEEEEEEEEecCCcc
Confidence 999999999999999999999999999999999863
No 22
>KOG4759|consensus
Probab=100.00 E-value=1.3e-39 Score=328.92 Aligned_cols=182 Identities=40% Similarity=0.558 Sum_probs=175.7
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCC-cccHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKK 732 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d-~~~~~~I~k 732 (837)
...+..++.++|+++++.|+++|.++++||++|.+||+|.|+++|.++||++||+||.++|++|+|+||| |..+++|++
T Consensus 81 ~~~~~~~~~sqmek~ie~lke~~~k~~~gr~~~~~~d~I~vk~~g~~~~L~~IA~vS~K~p~~ilIn~~d~p~~ikai~k 160 (263)
T KOG4759|consen 81 ENAVEAKANSQMEKTIEALKEDFNKIRQGRFNPGMLDKIVVKANGPKRPLNEIAQVSLKGPQTILINPFDFPVDIKAILK 160 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCChhhhhheeeecCCCcccHHHHHHHhcCCCceEEEecccCchHHHHHHH
Confidence 3567789999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHH
Q psy13351 733 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI 812 (837)
Q Consensus 733 aI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~i 812 (837)
||.+|+||+||++||.+|+|++||+|.|+|++|+|.+++++|++|++||++|++++++++|.++. +++|+++++++++
T Consensus 161 AI~~S~lnltP~~dg~~l~vsiP~~T~E~Re~laK~~~~~~ee~K~slr~ir~~~~kk~~k~~~~--~~~D~vkkae~~l 238 (263)
T KOG4759|consen 161 AIEASGLNLTPNLDGTVLRVSIPPVTKESREKLAKVLKRYFEEYKQSLRKIRTKSIKKSKKNKKS--LSEDEVKKAEAEL 238 (263)
T ss_pred HHHhCCCCCCcCCCCcEEEecCCCcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc--CChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998877553 9999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 813 QKLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 813 q~l~~~~~~~id~~~~~kekei~~~ 837 (837)
|+++|+|++++|++++.||||||..
T Consensus 239 ~~l~k~~v~~ld~llkskeKellk~ 263 (263)
T KOG4759|consen 239 QKLAKDAVNKLDDLLKSKEKELLKQ 263 (263)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999863
No 23
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.6e-39 Score=320.93 Aligned_cols=233 Identities=50% Similarity=0.796 Sum_probs=222.3
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
++|+++|+ +|+.+..+.+..+|++.+++++++|+++.+.|+++.||+|||+.++++.....++++...|+++|+++++
T Consensus 5 ~~rillkL--sGe~l~g~~~~gid~~~i~~~a~~i~~~~~~g~eV~iVvGGGni~Rg~~~~~~g~~r~~~D~mGmlaTvm 82 (238)
T COG0528 5 YMRILLKL--SGEALAGEQGFGIDPEVLDRIANEIKELVDLGVEVAVVVGGGNIARGYIGAAAGMDRVTADYMGMLATVM 82 (238)
T ss_pred eEEEEEEe--ecceecCCCCCCCCHHHHHHHHHHHHHHHhcCcEEEEEECCCHHHHhHHHHHcCCchhhhhHHHHHHHHH
Confidence 46778887 7887777677889999999999999999999999999999999999999988899999999999999999
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
|+.+|.+.|...|++++.+++..+..+..+++.+...++++.|.|+|++|+.|+|++|+|+.|+++|..++||.++..|+
T Consensus 83 Nal~L~~aL~~~~~~~~v~sai~~~~~~e~~~~~~A~~~l~~grVvIf~gGtg~P~fTTDt~AALrA~ei~ad~ll~atn 162 (238)
T COG0528 83 NALALQDALERLGVDTRVQSAIAMPQVAEPYSRREAIRHLEKGRVVIFGGGTGNPGFTTDTAAALRAEEIEADVLLKATN 162 (238)
T ss_pred HHHHHHHHHHhcCCcceecccccCccccCccCHHHHHHHHHcCCEEEEeCCCCCCCCchHHHHHHHHHHhCCcEEEEecc
Confidence 99999999999999999999999988889999999999999999999999999999999999999999999999999995
Q ss_pred -cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 574 -VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 574 -VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||++||+.+|+|++++++||.|+.+.+..++|++|+.+|+++++|++++|+.+++++.+++.|+..||+|.+
T Consensus 163 ~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~gT~V~~ 238 (238)
T COG0528 163 KVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEVGTIVEP 238 (238)
T ss_pred CCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCCceEecC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999863
No 24
>KOG1071|consensus
Probab=100.00 E-value=8.8e-39 Score=328.69 Aligned_cols=187 Identities=33% Similarity=0.487 Sum_probs=164.6
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhh----hhhhhcccccCCCeeEEEEeCCEEEEEEEecCC
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGK----KILNISNRNAKDGVIAIYISEKVGSLVEINCET 290 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~----~a~kk~~r~~~eG~i~~y~~~~~g~iveln~et 290 (837)
+..++|+||++||++|++||+||+|+|||+..|.+||+|++++ +|+|+++|.|+||+|++|+|+..+|||||||||
T Consensus 46 ~~allk~LR~kTgas~~ncKkALee~~gDl~~A~~~L~k~aqk~g~~~A~K~~sR~t~eGlIgv~~~~~r~vlvElNCET 125 (340)
T KOG1071|consen 46 SKALLKKLREKTGASMVNCKKALEECGGDLVLAEEWLHKKAQKEGWSKAAKKASRTTKEGLIGVLQEDGRTVLVELNCET 125 (340)
T ss_pred cHHHHHHHHHHcCCcHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhhhHHhhhcccccccceeEEEEeCCeEEEEEeeccc
Confidence 4456899999999999999999999999999999999999654 699999999999999999997777999999999
Q ss_pred chhccchHHHHHHHHHHHHHHh------cCCCChh-------------------hhhcccccCCCccHHHHHHHHHHhhC
Q psy13351 291 DFVAKNNEFIKFSKKIAKLITE------NTPINLD-------------------QLNNLKIKNNLLTVDEKCKELISRIG 345 (837)
Q Consensus 291 dfva~n~~f~~la~~ia~~iaa------~~p~~~~-------------------~l~q~~i~d~~~tv~~~~~~~~~~~g 345 (837)
||||||+.|+.|+.+||+.+++ .+|..++ .+.+.+..+++.|++|.+++.++++|
T Consensus 126 DFVARn~~Fq~Lv~~iA~~~l~~~~~~~~~~s~~s~e~~l~~~~~g~kl~~~~~~l~~~~d~~gkvsl~d~l~~~i~~~G 205 (340)
T KOG1071|consen 126 DFVARNDIFQDLVDQIALSVLAHCQTLKTKHSSYSKEKELEMDGRGFKLSESLSLLPNLPDVEGKVSLKDQLALAIGKLG 205 (340)
T ss_pred chhhccchHHHHHHHHHHHHHHhhhhcccChhhhhhhhhccccchHHHhhHHHhhccCCCCcccceeHHHHHHHHHHHhc
Confidence 9999999999999999999887 2333222 15677777788899999999999999
Q ss_pred CceEEEEEEEEeeCCe--EEEEeeC------------CeEEEEEEecCCCh------hHHHHHHhhhhccCccccC
Q psy13351 346 ENIKIRRFKLFKTNNN--LISYLHD------------NKIGVIVEYNGDNE------SAVKDVAMHIAAMKPIALS 401 (837)
Q Consensus 346 e~i~l~rf~~~~~g~~--i~~Y~H~------------~~~~~~v~~~~~~~------~~~~~iamhi~a~~p~~l~ 401 (837)
||++++||.+|+.+++ +++|.|+ |++|++|+++...+ .+++.|+.||++|+|..+.
T Consensus 206 ENvkvrR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~~~~~~~~~i~q~ivgm~p~s~~ 281 (340)
T KOG1071|consen 206 ENVKVRRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLTSLEDVAKQICQHIVGMSPESVG 281 (340)
T ss_pred cceEEeEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhhhHHHHHHHHHHHhhccChhhhc
Confidence 9999999999998664 9999995 37899998866443 4789999999999999887
No 25
>PRK14556 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=3.3e-37 Score=319.65 Aligned_cols=234 Identities=44% Similarity=0.680 Sum_probs=218.2
Q ss_pred HHHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccc-cCCCcchHHHHHHHHH
Q psy13351 413 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-QNIDRSTADYMGMLAT 491 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-~~~~~~~~~~~~~~~~ 491 (837)
.++|+++|+ +|+++..++...++++.+.+++++|+++.+.|+++.||+|||+.+++..... .++++...|+++|+++
T Consensus 14 ~~~rvllKl--sGe~l~~~~~~~~d~~~~~~~a~~i~~~~~~g~~i~iVvGGGni~Rg~~~~~~~~~~r~~~D~~GmlaT 91 (249)
T PRK14556 14 KLKRILLKL--SGESLSADQGFGINVESAQPIINQIKTLTNFGVELALVVGGGNILRGGRANFGNKIRRATADSMGMIAT 91 (249)
T ss_pred hhCEEEEEE--ehhhCcCCCCCCcCHHHHHHHHHHHHHHHhCCcEEEEEECCCHHHhCchhhccCCCchhhhhHHHHHHH
Confidence 367889997 7887776677789999999999999999999999999999999999855553 4688999999999999
Q ss_pred HHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEe
Q psy13351 492 IINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 492 ~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liil 571 (837)
.+|+.+|.++|...|++++.+++.....+.++++.+.+.++++.|.|||+.|+.|+|++|+|++|+++|..++||.|+++
T Consensus 92 ~iNal~l~~~l~~~~~~~~v~sa~~~~~~~e~~~~~~~~~~l~~g~vvi~~gg~G~p~~StD~lAallA~~l~Ad~Lii~ 171 (249)
T PRK14556 92 MINALALRDMLISEGVDAEVFSAKGVDGLLKVASAHEFNQELAKGRVLIFAGGTGNPFVTTDTTASLRAVEIGADALLKA 171 (249)
T ss_pred HHHHHHHHHHHHHcCCCeEEeeccccCcCCCCCCHHHHHHHHhCCCEEEEECCCCCCcCCcHHHHHHHHHHcCCCEEEEE
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
||||||||+||+.+|+|++++++++.+..+.+..++|+.|++.|.++|+|++|+|+.+|++|.+++.|+.+||+|.-
T Consensus 172 TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~GT~i~~ 248 (249)
T PRK14556 172 TTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYGTWVTL 248 (249)
T ss_pred eCCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCceEEEe
Confidence 99999999999999999999999999888777788999999999999999999999999999999999999999963
No 26
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....
Probab=100.00 E-value=4.4e-35 Score=301.66 Aligned_cols=166 Identities=42% Similarity=0.672 Sum_probs=142.0
Q ss_pred cCCCeeEEEEeCCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCC
Q psy13351 267 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGE 346 (837)
Q Consensus 267 ~~eG~i~~y~~~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge 346 (837)
|+||+|+++++++.|+||||||||||||||++|++|+++||.+++...+.+++++.+..+.+ .||+|.+.++++++||
T Consensus 1 a~EG~V~~~v~~~~a~~vElncETDFVArn~~F~~l~~~ia~~~~~~~~~~~~~l~~~~~~~--~tv~d~i~~~i~~igE 78 (221)
T PF00889_consen 1 AAEGLVGIAVSGDKAAMVELNCETDFVARNEEFQNLAKEIADAALENKASDVEELLALPLAS--KTVKDAIAELIAKIGE 78 (221)
T ss_dssp --EEEEEEEEETTEEEEEEEEESSHHHHTSHHHHHHHHHHHHHHHCTTEESHHHHHHSB--S--SHHHHHHHHHHHHH-S
T ss_pred CCceEEEEEEeCCcEEEEEEEccccceecCHHHHHHHHHHHHHHHHhCCCCHHHHHhccccc--ccHHHHHHHHHHHhCC
Confidence 57999999999888999999999999999999999999999999988889999988877765 7999999999999999
Q ss_pred ceEEEEEEEEee-CCeEEEEeeC-CeEEEEEEecCCCh---hHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHH
Q psy13351 347 NIKIRRFKLFKT-NNNLISYLHD-NKIGVIVEYNGDNE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKA 421 (837)
Q Consensus 347 ~i~l~rf~~~~~-g~~i~~Y~H~-~~~~~~v~~~~~~~---~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~ 421 (837)
||+|+||.+++. ++.+++|+|+ ||+|+||.+++.++ ++|++||||||||+|.||++++||++++++|++++..++
T Consensus 79 nI~l~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~~~~ak~iAmhIaA~~P~~l~~~~vp~~~~~~E~~i~~~~~ 158 (221)
T PF00889_consen 79 NIQLRRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSAKEFAKDIAMHIAAMNPKYLSEEDVPAEVLEKEKEIAKEQA 158 (221)
T ss_dssp -EEEEEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGGHHHHHHHHHHHHHH--SBSSCTGS-CCHHHHHHHHHHHHH
T ss_pred CEEEeEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchHHHHHHHHHHHHhhhCccccCcccCCHHHHHHHHHHHHHHh
Confidence 999999999987 4679999999 89999999999887 799999999999999999999999999999999988886
Q ss_pred hhhhhhhccCCCccccccc
Q psy13351 422 QQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 422 ~~~gs~~~~g~~~~i~~~~ 440 (837)
.. .|+|..+.+++
T Consensus 159 ~~------~gKpe~i~ekI 171 (221)
T PF00889_consen 159 KA------EGKPENIIEKI 171 (221)
T ss_dssp HT------TTS-HHHHHHH
T ss_pred hc------cCCcHHHHHHH
Confidence 43 37777665554
No 27
>PRK14558 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=2.5e-34 Score=301.47 Aligned_cols=228 Identities=41% Similarity=0.664 Sum_probs=197.6
Q ss_pred HHHHHHhhhhhhhccCC-CccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~-~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
|+++| .|+++++++ +..++.+.+++++++|+++++.|++++||||||+.+++... .++++...+.+++..+.++
T Consensus 2 riviK---lGgs~lt~~~~~~~~~~~i~~la~~i~~~~~~g~~viiV~GgGs~~~g~~~--~~~~~~~~d~ig~~~~~ln 76 (231)
T PRK14558 2 RVLLK---LSGEALSGEGEKGFDPERVNYLVNEIKSVVEYGFKIGIVIGAGNLFRGVEL--KELSPTRADQIGMLGTVIN 76 (231)
T ss_pred eEEEE---eeHHHccCCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEECccHHHHHHhc--cCCChHHHHHHHHHHHHHH
Confidence 56788 555666554 56799999999999999999999999999999987665332 2445556788888777778
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
+.++..+|..+|++++.+++........+.+.+.+..+++.|.|||++|+.|.+..++|++|+++|..|+||.+++||||
T Consensus 77 ~~~~~~~l~~~gi~a~~~~~~~~~~~~~~~~~~~i~~ll~~g~vpV~~G~~~~~~~~~D~~a~~lA~~l~a~~l~~~tdV 156 (231)
T PRK14558 77 ALYLKDIFEKSGLKAVIVSQIVNLPSVEPINYDDIELYFRAGYIVIFAGGTSNPFFTTDTAAALRAVEMKADILIKATKV 156 (231)
T ss_pred HHHHHHHHHHcCCCeEEeccccccchhhhhhHHHHHHHHHCCCEEEEECCCCCCCCCcHHHHHHHHHHcCCCEEEEEecC
Confidence 88889999999999988876432211234457788999999999999999888999999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||+||+.+|+|+++++++++|+.+.|..++|+.|+++|.++|++++|+||.+|+++.+++.|+.+||+|.+
T Consensus 157 dGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~ 230 (231)
T PRK14558 157 DGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVGTLVVP 230 (231)
T ss_pred CeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCcEEeCC
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999976
No 28
>PRK00358 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=3.1e-34 Score=301.10 Aligned_cols=230 Identities=52% Similarity=0.834 Sum_probs=199.5
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINS 495 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 495 (837)
++|+|. +|+.+...++..++.+.+++++++|+++++.|+++|||||||+.++++.....+++...++..+++++.+++
T Consensus 2 ~iViK~--GGs~l~~~~~~~~~~~~i~~~~~~i~~~~~~g~~vvlV~gGG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~ 79 (231)
T PRK00358 2 RVLLKL--SGEALAGEKGFGIDPEVLDRIAEEIKEVVELGVEVAIVVGGGNIFRGYIGAAAGMDRATADYMGMLATVMNA 79 (231)
T ss_pred eEEEEe--ccceecCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHhhcCCChhhHHHHHHHHHHHHH
Confidence 356784 455444445667899999999999999999999999999999888876532234555678999999998999
Q ss_pred HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccC
Q psy13351 496 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 575 (837)
Q Consensus 496 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVd 575 (837)
.+|+..|..+|+++..+++...+....++..+.+.+++++|.|||++|+.|+++.++|++|+++|..|+||+|+++||||
T Consensus 80 ~ll~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~~~~~l~~g~vPVv~g~~~~~~~ssD~~A~~lA~~l~A~~li~~tdVd 159 (231)
T PRK00358 80 LALQDALERAGVDTRVQSAIPMPQVAEPYIRRRAIRHLEKGRVVIFAAGTGNPFFTTDTAAALRAEEIGADVLLKATNVD 159 (231)
T ss_pred HHHHHHHHHcCCCeEEechhhcccccCcccHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeeCcC
Confidence 89999999999999876665554444455567788999999999999988888899999999999999999999999999
Q ss_pred ccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 576 GIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 576 GVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||++||+.+|+|++|++++++|+.+.|++++|++|+++|.++|++++|+||.+|+++.++++|+..||+|.
T Consensus 160 GVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T PRK00358 160 GVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIGTLVS 231 (231)
T ss_pred ceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCCEEeC
Confidence 999999999999999999999998777888999999999999999999999999999999999999999984
No 29
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=100.00 E-value=9.9e-34 Score=296.63 Aligned_cols=228 Identities=50% Similarity=0.821 Sum_probs=205.2
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 496 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (837)
+|+| .|++.++++...++.+.+++++++|+++.+.|++++||||||..+.++.....++++..++++++.++.+++.
T Consensus 2 iViK---iGGs~l~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvvV~ggG~~a~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 78 (229)
T cd04239 2 IVLK---LSGEALAGEGGGIDPEVLKEIAREIKEVVDLGVEVAIVVGGGNIARGYIAAARGMPRATADYIGMLATVMNAL 78 (229)
T ss_pred EEEE---ECcceecCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCChHHhhHHHhhcCCChhhHHHHHHHHHHHHHH
Confidence 4677 5555665655589999999999999999889999999999998877766655566667789999999999999
Q ss_pred HHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccCc
Q psy13351 497 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG 576 (837)
Q Consensus 497 ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVdG 576 (837)
+|+.+|..+|+++..+++.++......++.+.+..+++.|.|||++|+.|.+..++|++|+++|..|+||+|+++|||||
T Consensus 79 l~~~~l~~~Gi~a~~~~~~~~~~~~~~~~~~~l~~~l~~g~ipVi~g~~g~~~~~sD~~A~~lA~~l~a~~li~~tdVdG 158 (229)
T cd04239 79 ALQDALEKLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRIVIFGGGTGNPGFTTDTAAALRAEEIGADVLLKATNVDG 158 (229)
T ss_pred HHHHHHHHcCCCEEEeCHHHHhhhhccccHHHHHHHHhCCCEEEEeCccCCCCCCcHHHHHHHHHHcCCCEEEEEECCCc
Confidence 99999999999999999988766656677888999999999999999989998999999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 577 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 577 Vy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||+||+.+|+|++|++++++|+.+..++++|++|++++.++|++++|+||..|+++.++++|+..||+|.
T Consensus 159 vy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i~ 229 (229)
T cd04239 159 VYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVGTLIE 229 (229)
T ss_pred ccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCCeEeC
Confidence 99999999999999999999999887779999999999999999999999999999999999998999983
No 30
>PRK14557 pyrH uridylate kinase; Provisional
Probab=100.00 E-value=9.5e-34 Score=297.51 Aligned_cols=237 Identities=39% Similarity=0.637 Sum_probs=205.3
Q ss_pred HHHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHH
Q psy13351 413 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI 492 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ 492 (837)
.++++++|+ +|+++...+...++.+.+++++++|+++.+.|++++||||||+.+++......++++..+|.++++++.
T Consensus 3 ~~~riViKl--GG~al~~~~~~~~~~~~i~~~a~~i~~~~~~g~~vvVVvGgGn~~rg~~a~~~~~~~~~~D~ig~~g~~ 80 (247)
T PRK14557 3 PYKRVLIKL--SGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTI 80 (247)
T ss_pred cccEEEEEe--CceeECCCCCCCcCHHHHHHHHHHHHHHHHcCCeEEEEECCcHHHHHHHHHhcCCChHHHHHHHHHHHH
Confidence 356788896 777776555567888999999999999999999999999999877743333345677788999999999
Q ss_pred HHHHHHHHHHHHc-CCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEe
Q psy13351 493 INSLALFDILNKS-GIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 493 ~~~~ll~~~L~~~-gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liil 571 (837)
+++.++..+|... +..+..++...+.....++....+...+++|.|||++|+.|.|++|+|++|+++|..++||+|+++
T Consensus 81 lna~ll~~~l~~~~~~~~~i~t~~~~~~~~~~~~~~~~~~~l~~g~VvV~~G~~g~~~~stD~lAallA~~l~Ad~li~~ 160 (247)
T PRK14557 81 INSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVA 160 (247)
T ss_pred HHHHHHHHHHHhhhCCceeEEeccccccccchhhHHHHHHHHhCCCEEEEECCcCCCccChHHHHHHHHHHhCCCEEEEe
Confidence 9999999999874 666666666666555566666677888999999999999999999999999999999999999999
Q ss_pred -eccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEee
Q psy13351 572 -TKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 572 -TDVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~ 650 (837)
||||||||+||+.+|+|++|+++++.|+...+..++++.|+++|.++|++++|+||.+|++|.++++|+.+||+|.+.+
T Consensus 161 ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~GT~i~~~~ 240 (247)
T PRK14557 161 KQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDDA 240 (247)
T ss_pred cCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCCcEEEecCc
Confidence 5999999999999999999999999888666667889999999999999999999999999999999999999999875
Q ss_pred e
Q psy13351 651 I 651 (837)
Q Consensus 651 ~ 651 (837)
.
T Consensus 241 ~ 241 (247)
T PRK14557 241 S 241 (247)
T ss_pred c
Confidence 4
No 31
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=100.00 E-value=1.5e-33 Score=295.32 Aligned_cols=229 Identities=54% Similarity=0.873 Sum_probs=201.0
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSL 496 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (837)
+++|+ +||.+...+|..++.+.+++++++|+++...|+++|||||||+.+++......+......++++++.+..++.
T Consensus 3 iViKl--GGs~itdk~~~~~~~~~i~~~a~~i~~~~~~~~~~viVhGgG~~~~~~~~~~~~~~~~~~d~~g~~~~~~n~~ 80 (231)
T cd04254 3 VLLKL--SGEALAGENGFGIDPEVLNRIAREIKEVVDLGVEVAIVVGGGNIFRGASAAEAGMDRATADYMGMLATVINAL 80 (231)
T ss_pred EEEEe--CceEECCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCCcccccchhhhcCCCchhhhHHHHHHHHHHHH
Confidence 56775 6666655567789999999999999999888899999999998754433333344444567888888888888
Q ss_pred HHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccCc
Q psy13351 497 ALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDG 576 (837)
Q Consensus 497 ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVdG 576 (837)
+++..|...|++++.+++.+.......++.+.+..+++.|.|||++|+.|.+.+++|++|+++|..|+||+++++|||||
T Consensus 81 ll~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~l~~~l~~g~ipV~~g~~G~~~~~~D~~a~~lA~~l~a~~l~~~tdVdG 160 (231)
T cd04254 81 ALQDALESLGVKTRVMSAIPMQGVAEPYIRRRAIRHLEKGRVVIFAGGTGNPFFTTDTAAALRAIEINADVILKATKVDG 160 (231)
T ss_pred HHHHHHHHcCCCeEEEcHHHhhhhhcccCHHHHHHHHHCCCEEEEECCcCCCCCCcHHHHHHHHHHcCCCEEEEEeCCCE
Confidence 99999999999999999988644445577899999999999999999989999999999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 577 IYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 577 Vy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
||++||+.+|+++++++++++++.+.|..++|++|++.|.++|++++|+||.+|++|.++|+|+.+||+|+
T Consensus 161 vy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~GT~i~ 231 (231)
T cd04254 161 VYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVGTLIS 231 (231)
T ss_pred EEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCCEEeC
Confidence 99999999999999999999999888888999999999999999999999999999999999999999984
No 32
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=100.00 E-value=2.1e-33 Score=294.64 Aligned_cols=231 Identities=57% Similarity=0.845 Sum_probs=202.6
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+|+ +|+++..+++..++.+.+++++++|+++...|+++|||||||+.+.++.....+.+...+++++++.++++
T Consensus 2 ~~iViKl--GGs~i~~~~~~~~~~~~i~~~a~~i~~~~~~~~~vviV~G~Gs~~~~~~a~~~~~~~~~~d~~g~~~~~l~ 79 (233)
T TIGR02075 2 KRVLLKL--SGEALAGESGFGIDPDRLNRIANEIKELVKMGIEVGIVIGGGNIFRGVSAKELGIDRVTADYMGMLATVIN 79 (233)
T ss_pred CEEEEEe--ChhhcCCCCCCCCCHHHHHHHHHHHHHHHhCCCeEEEEECCCHHHHHHHHHhcCCCCccHHHHHHHHHHHH
Confidence 3567885 56665554566789999999999999998889999999999987666543333455555789999999999
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec-
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK- 573 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD- 573 (837)
+.+|+.+|..+|++++.+++.+.......+..+.+..++++|.|||+.|+.|.+.+++|++|+++|..|+||+|+++||
T Consensus 80 ~~l~~~~L~~~Gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VpV~~g~~g~~~~s~D~~a~~lA~~l~a~~li~~td~ 159 (233)
T TIGR02075 80 GLALRDALEKLGVKTRVLSAISMPQICESYIRRKAIKHLEKGKVVIFSGGTGNPFFTTDTAAALRAIEINADVILKGTNG 159 (233)
T ss_pred HHHHHHHHHhCCCCcEEeccccCCCCccccCHHHHHHHHHCCCEEEEECCCCCCCCCchHHHHHHHHHcCCCEEEEeecc
Confidence 9999999999999999999988763333466788999999999999999988999999999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|+++++++++++|+.+.|...+|++|+++|.++|++++|+||.+|++|.++++|+.+||+|+
T Consensus 160 VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~GT~i~ 233 (233)
T TIGR02075 160 VDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGIGTLVS 233 (233)
T ss_pred cCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCCCEEeC
Confidence 99999999999999999999999998887778899999999999999999999999999999999999999984
No 33
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.97 E-value=1.2e-30 Score=275.34 Aligned_cols=230 Identities=18% Similarity=0.197 Sum_probs=190.6
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+| +||+.++...+.++...++.++++|+.|+..|++||||+||. .+.+.......-.|..+...|++++.+
T Consensus 6 ~~riVvK---iGSs~Lt~~~g~l~~~~l~~l~~~ia~L~~~G~eVilVSSGA-iaaG~~~Lg~~~rp~~l~~kQA~AAVG 81 (369)
T COG0263 6 ARRIVVK---IGSSSLTDGTGGLDRSKLEELVRQVAALHKAGHEVVLVSSGA-IAAGRTRLGLPKRPKTLAEKQAAAAVG 81 (369)
T ss_pred ceEEEEE---ECcceeeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEccch-hhhChhhcCCCCCCcchHHHHHHHHhC
Confidence 4678999 788888888889999999999999999999999999997772 222333332223456778899999999
Q ss_pred HHHHHHHH---HHHcCCce--eEeehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCCCCCC--------cchHHHHHH
Q psy13351 494 NSLALFDI---LNKSGIIS--HVMSAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIGNPFF--------TTDTTAALR 559 (837)
Q Consensus 494 ~~~ll~~~---L~~~gi~a--~~l~~~~~~~~~~~~~-~~~i~~ll~~g~VPVv~G~~G~~~~--------s~D~lAa~l 559 (837)
|..+|..| |..+|+.. +.++..++....+..| ...+..+++.|.||||.. |+.+ .||++|+.+
T Consensus 82 Q~~Lm~~y~~~f~~~g~~v~QiLLTr~D~~~r~ry~Nar~Tl~~Ll~~gvVPIINE---NDtva~~EikfGDND~LsA~V 158 (369)
T COG0263 82 QVRLMQLYEELFARYGIKVGQILLTRDDFSDRRRYLNARNTLSALLELGVVPIINE---NDTVATEEIKFGDNDTLSALV 158 (369)
T ss_pred HHHHHHHHHHHHHhcCCeeeEEEeehhhhhhHHHHHHHHHHHHHHHHCCceeeecC---CCceeeeeeeecCCchHHHHH
Confidence 99999988 88888876 5666666655444344 357888999999999943 2221 199999999
Q ss_pred HHHcCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEc
Q psy13351 560 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSI 627 (837)
Q Consensus 560 A~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng 627 (837)
|.+++||.|++||||||+||+||+.+|+|++|++++. +|+.. +|||.+|+.|+++|.++|++++|++|
T Consensus 159 A~lv~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g 238 (369)
T COG0263 159 AILVGADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASG 238 (369)
T ss_pred HHHhCCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecC
Confidence 9999999999999999999999999999999999863 34443 68999999999999999999999999
Q ss_pred cCcchHHHHHcCCccceEEEEee
Q psy13351 628 IKSGALKRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 628 ~~~~~i~~al~Ge~~GT~I~~~~ 650 (837)
..|+.+.+++.|+..||+|.|..
T Consensus 239 ~~~~~i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 239 SKPDVILDALEGEAVGTLFEPQA 261 (369)
T ss_pred CCcchHHHHHhCCCCccEEecCC
Confidence 99999999999999999999763
No 34
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.96 E-value=9.2e-29 Score=257.64 Aligned_cols=209 Identities=26% Similarity=0.390 Sum_probs=175.1
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccccc--CCCcchHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIIN 494 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+ +|| ++.++. +.+.+++++++|+++.. |++++||||||+.++.+..... +.+...++++++.++.++
T Consensus 2 iViKl--GGs-~l~~~~---~~~~i~~~~~~i~~~~~-~~~iiiV~GgG~~a~~~~~~~~~~~~~~~~~d~~g~~~~~ln 74 (221)
T cd04253 2 IVISL--GGS-VLAPEK---DADFIKEYANVLRKISD-GHKVAVVVGGGRLAREYISVARKLGASEAFLDEIGIMATRLN 74 (221)
T ss_pred EEEEe--ccc-eeCCCC---ChHHHHHHHHHHHHHhC-CCEEEEEECCCHHHHHHHHHHHHcCCCHHHHHHhcCHHHHHH
Confidence 46774 455 444433 77889999999998765 7899999999988877654432 344456789999999999
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
+.++...+. .|++++.+ +.+.+.++++.|.|||++|+. |++|+|++|+++|..|+||.|+++|||
T Consensus 75 ~~~~~~~l~-~~~~~~~~------------~~~~~~~~l~~g~vpv~~G~~--~~~s~D~~a~~lA~~l~a~~li~~tdV 139 (221)
T cd04253 75 ARLLIAALG-DAYPPVPT------------SYEEALEAMFTGKIVVMGGTE--PGQSTDAVAALLAERLGADLLINATNV 139 (221)
T ss_pred HHHHHHHHh-cCCCcCCC------------CHHHHHHHHHcCCeEEEECCC--CCCccHHHHHHHHHHcCCCEEEEEeCC
Confidence 998887776 67765432 356677889999999999985 578999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHHh--------cc-ccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceE
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVISK--------KL-EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 645 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~~--------G~-~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~ 645 (837)
||||++||+.+|++++|++++++|+.+. |+ +++|++|++++.++|++++|+||.+|++|.++++|+.+||+
T Consensus 140 dGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~~~l~g~~~GT~ 219 (221)
T cd04253 140 DGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLERALKGEFVGTI 219 (221)
T ss_pred CeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCeE
Confidence 9999999999999999999999888762 33 68899999999999999999999999999999999999999
Q ss_pred EE
Q psy13351 646 VY 647 (837)
Q Consensus 646 I~ 647 (837)
|.
T Consensus 220 I~ 221 (221)
T cd04253 220 IE 221 (221)
T ss_pred eC
Confidence 83
No 35
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.96 E-value=2.6e-28 Score=254.43 Aligned_cols=209 Identities=26% Similarity=0.397 Sum_probs=175.6
Q ss_pred HHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccccc--CCCcchHHHHHHHHHHHHH
Q psy13351 418 VLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQ--NIDRSTADYMGMLATIINS 495 (837)
Q Consensus 418 v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~ 495 (837)
++| .|+++++++. +.+.+++++++|+++.++ ++++||||||+.++.+..... +.+....+++++..+.+++
T Consensus 2 ViK---lGGs~l~~~~---~~~~i~~i~~~i~~~~~~-~~viiV~ggG~~a~~~~~~~~~~~~~~~~~~~~g~~~~~ln~ 74 (221)
T TIGR02076 2 VIS---LGGSVLSPEI---DAEFIKEFANILRKLSDE-HKVGVVVGGGKTARRYIGVARELGASETFLDEIGIDATRLNA 74 (221)
T ss_pred EEE---echhhcCCCC---CHHHHHHHHHHHHHHHhC-CeEEEEECCcHHHHHHHHHHHHcCCCHHHHHHhhhHHHHHHH
Confidence 456 4445555543 788999999999998876 899999999988877654432 3355567899999999999
Q ss_pred HHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccC
Q psy13351 496 LALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVD 575 (837)
Q Consensus 496 ~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVd 575 (837)
.++...|...+++++.. +.....+++..|.+||++|+. |++|+|++|+++|.+++||+|+++||||
T Consensus 75 ~~l~~ll~~~~~~~~~~------------~~~~~~~~l~~g~ipv~~G~~--~~~s~D~~A~~lA~~l~A~~li~ltdVd 140 (221)
T TIGR02076 75 MLLIAALGDDAYPKVPE------------NFEEALEAMSLGKIVVMGGTH--PGHTTDAVAALLAEFSKADLLINATNVD 140 (221)
T ss_pred HHHHHHHHhcCCCCcCC------------CHHHHHHHHHcCCEEEEcCCC--CCCCcHHHHHHHHHHcCCCEEEEEeCCC
Confidence 98888887777776542 234456778999999999974 7899999999999999999999999999
Q ss_pred ccccCCCCCCCCceeccccCHHHHHHh--------c-cccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEE
Q psy13351 576 GIYNSDPNKCLSAIIYKKITFDEVISK--------K-LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646 (837)
Q Consensus 576 GVy~~dP~~~~~a~~I~~is~~e~~~~--------G-~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I 646 (837)
|||++||+.+|++++|++++++|+.+. | +|.+|++|++++.+.|++++|+||..|+++.+++.|+..||+|
T Consensus 141 Gvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~GT~i 220 (221)
T TIGR02076 141 GVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLEKVLKGEHVGTII 220 (221)
T ss_pred cccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHHHHHCCCCCCeEe
Confidence 999999999999999999999887661 3 5688999999999999999999999999999999999999998
Q ss_pred E
Q psy13351 647 Y 647 (837)
Q Consensus 647 ~ 647 (837)
.
T Consensus 221 ~ 221 (221)
T TIGR02076 221 E 221 (221)
T ss_pred C
Confidence 3
No 36
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.96 E-value=4.4e-28 Score=258.49 Aligned_cols=230 Identities=17% Similarity=0.211 Sum_probs=172.5
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
+++|+| .|++.++++...++.+.+++++++|+++++.|+++|||+|| |...+...... . .+......+++++.+
T Consensus 10 ~~iViK---~Ggs~l~~~~~~~~~~~i~~~~~~I~~~~~~g~~vvlV~Sga~~~g~~~l~~~-~-~~~~~~~~~a~aa~G 84 (266)
T PRK12314 10 KRIVIK---VGSSTLSYENGKINLERIEQLVFVISDLMNKGKEVILVSSGAIGAGLTKLKLD-K-RPTSLAEKQALAAVG 84 (266)
T ss_pred CEEEEE---eCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeeCcccccceeeccc-c-CCCCHHHHHHHHHHh
Confidence 467889 56666666667899999999999999999999999998555 44443333222 1 122233344444444
Q ss_pred H---HHHHHHHHHHcCCce--eEeehhchhhh-hhccchHHHHHHHhCCCEEEEeCC-----CC--CCCCcchHHHHHHH
Q psy13351 494 N---SLALFDILNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGG-----IG--NPFFTTDTTAALRA 560 (837)
Q Consensus 494 ~---~~ll~~~L~~~gi~a--~~l~~~~~~~~-~~~~~~~~i~~ll~~g~VPVv~G~-----~G--~~~~s~D~lAa~lA 560 (837)
+ ..++..+|..+|+++ +.++..++... ........+..+++.|+|||+++. .+ ....++|++|+++|
T Consensus 85 q~~l~~~~~~~~~~~g~~~~q~llT~~~~~~~~~~~~~~~~l~~ll~~g~IPVv~~nd~v~~~~~~~~~~~~D~~Aa~lA 164 (266)
T PRK12314 85 QPELMSLYSKFFAEYGIVVAQILLTRDDFDSPKSRANVKNTFESLLELGILPIVNENDAVATDEIDTKFGDNDRLSAIVA 164 (266)
T ss_pred HHHHHHHHHHHHHHcCCeEEEEEEecccccchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeccccceecchHHHHHHHH
Confidence 3 445556699999987 23333333221 111235678889999999999851 11 11345999999999
Q ss_pred HHcCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEcc
Q psy13351 561 AEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSII 628 (837)
Q Consensus 561 ~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~ 628 (837)
.+|+||.|+|+|||||||++||+.+|+|++|+.+++ .+..+ +|+|++|+.|+..|.++|++++|+||+
T Consensus 165 ~~l~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~ 244 (266)
T PRK12314 165 KLVKADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGF 244 (266)
T ss_pred HHhCCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCC
Confidence 999999999999999999999999999999999875 43333 368999999999999999999999999
Q ss_pred CcchHHHHHcCCccceEEEEe
Q psy13351 629 KSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 629 ~~~~i~~al~Ge~~GT~I~~~ 649 (837)
+|+.|.+++.|+.+||+|.|.
T Consensus 245 ~~~~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 245 NPSDILDFLEGESIGTLFAPK 265 (266)
T ss_pred CchHHHHHHcCCCCceEEccC
Confidence 999999999999999999763
No 37
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.95 E-value=5.4e-28 Score=255.95 Aligned_cols=228 Identities=20% Similarity=0.288 Sum_probs=177.1
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+| .|+++++++. .++...+..++++++++++ ++++||||||| .++++... ++........+++++.+
T Consensus 8 ~~riVIK---lG~Svit~~~-~~~~~~~~~l~~~i~~l~~-~~~vilVssGa-va~g~~~~--~~~~~~~~~~qa~aaiG 79 (264)
T PTZ00489 8 VKRIVVK---VGSSILVDNQ-EIAAHRIEALCRFIADLQT-KYEVILVTSGA-VAAGYTKK--EMDKSYVPNKQALASMG 79 (264)
T ss_pred CCEEEEE---eccceeeCCC-CcCHHHHHHHHHHHHHHhc-CCeEEEEecCh-HhcChhhc--CCCccccHHHHHHHHhC
Confidence 5678999 6777776643 5778889999999999976 79999998776 55555422 23334445667777777
Q ss_pred HHHHHHHH---HHHcCCceeEee--hhchhhhhh-ccchHHHHHHHhCCCEEEEeCCCCCCC----C-cchHHHHHHHHH
Q psy13351 494 NSLALFDI---LNKSGIISHVMS--AISIEKFLE-SYIPLNAIKYLEEGKVVIFAGGIGNPF----F-TTDTTAALRAAE 562 (837)
Q Consensus 494 ~~~ll~~~---L~~~gi~a~~l~--~~~~~~~~~-~~~~~~i~~ll~~g~VPVv~G~~G~~~----~-s~D~lAa~lA~~ 562 (837)
+..+|..| |..+|+.+..+. ..++..... ....+.+..+|++|.|||++|....+. + ++|++|+++|..
T Consensus 80 q~~L~~~y~~~f~~~~~~~aqiLlt~~d~~~~~~~~n~~~~l~~lL~~g~VPIinend~~~~~e~~~gdnD~lAa~lA~~ 159 (264)
T PTZ00489 80 QPLLMHMYYTELQKHGILCAQMLLAAYDLDSRKRTINAHNTIEVLISHKVIPIINENDATALHELVFGDNDRLSALVAHH 159 (264)
T ss_pred HHHHHHHHHHHHHhCCCeEEEeeeeccccccchhhHHHHHHHHHHHHCCCEEEECCCCCcccceeEeCChHHHHHHHHHH
Confidence 77777666 888999874333 333322211 123567889999999999987332222 2 699999999999
Q ss_pred cCCcEEEEeeccCccccCCCCCCCCcee---ccccCHHHHHH---------hccccchHHHHHHHHhCCCCEEEEEccCc
Q psy13351 563 IKAEIILKATKVDGIYNSDPNKCLSAII---YKKITFDEVIS---------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS 630 (837)
Q Consensus 563 L~Ad~liilTDVdGVy~~dP~~~~~a~~---I~~is~~e~~~---------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~ 630 (837)
++||+|+++|||||||++||+.+|+|++ +++++.+++.. +|||.+|+.|+..|.++|++++|++|.+|
T Consensus 160 l~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~ 239 (264)
T PTZ00489 160 FKADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHL 239 (264)
T ss_pred hCCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCc
Confidence 9999999999999999999999999988 67788765521 79999999999999999999999999999
Q ss_pred chHHHHHcCC--ccceEEEEe
Q psy13351 631 GALKRVIEGK--NEGTLVYEI 649 (837)
Q Consensus 631 ~~i~~al~Ge--~~GT~I~~~ 649 (837)
+.|.+++.|+ ..||+|.|.
T Consensus 240 ~~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 240 EKARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred hHHHHHHcCCCCCCceEEeec
Confidence 9999999875 379999874
No 38
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.95 E-value=6.7e-28 Score=266.18 Aligned_cols=230 Identities=18% Similarity=0.231 Sum_probs=175.8
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+| .|++.+++....++++.+.+++++|+++++.|+++||||||| .+.+...... .........+++++.+
T Consensus 5 ~kriVIK---iGgs~L~~~~~~l~~~~i~~la~~I~~l~~~G~~vvlVsSGa-va~G~~~l~~-~~~~~~~~~qalaavG 79 (368)
T PRK13402 5 WKRIVVK---VGSSLLTPHHQGCSSHYLLGLVQQIVYLKDQGHQVVLVSSGA-VAAGYHKLGF-IDRPSVPEKQAMAAAG 79 (368)
T ss_pred CcEEEEE---EchhhccCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCh-hhcCccccCC-CCCCCccHHHHHHHhh
Confidence 3578999 566666666678999999999999999999999999999997 2222221110 1111233445555555
Q ss_pred HHHH---HHHHHHHcCCceeEe--ehhchhhhhhcc--chHHHHHHHhCCCEEEEeCCCCC-----CCCcchHHHHHHHH
Q psy13351 494 NSLA---LFDILNKSGIISHVM--SAISIEKFLESY--IPLNAIKYLEEGKVVIFAGGIGN-----PFFTTDTTAALRAA 561 (837)
Q Consensus 494 ~~~l---l~~~L~~~gi~a~~l--~~~~~~~~~~~~--~~~~i~~ll~~g~VPVv~G~~G~-----~~~s~D~lAa~lA~ 561 (837)
+..+ +...|..+|+++..+ +..++... ..+ -...+..+|+.|.|||++++... ...++|++|+++|.
T Consensus 80 q~~l~~~~~~~f~~~g~~~aqvLlT~~d~~~~-~~y~n~~~~l~~LL~~g~IPIinenD~v~~~el~~GdnD~lAa~vA~ 158 (368)
T PRK13402 80 QGLLMATWSKLFLSHGFPAAQLLLTHGDLRDR-ERYINIRNTINVLLERGILPIINENDAVTTDRLKVGDNDNLSAMVAA 158 (368)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEecchhhhH-HHHHHHHHHHHHHHHCCcEEEEeCCCcEeecccccCChHHHHHHHHH
Confidence 5444 445599999998654 44443211 112 13678889999999999852111 11348999999999
Q ss_pred HcCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEccC
Q psy13351 562 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIK 629 (837)
Q Consensus 562 ~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~ 629 (837)
+++||.|+++|||||||++||+.+|++++|+++++ +++.. +|+|.+|+.|+..|.++|++++|+|+..
T Consensus 159 ~l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~ 238 (368)
T PRK13402 159 LADADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFT 238 (368)
T ss_pred HhCCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCC
Confidence 99999999999999999999999999999999985 45432 6789999999999999999999999999
Q ss_pred cchHHHHHcCCccceEEEEe
Q psy13351 630 SGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 630 ~~~i~~al~Ge~~GT~I~~~ 649 (837)
|+.|.+++.|+..||+|.+.
T Consensus 239 ~~~l~~~l~g~~~GT~i~~~ 258 (368)
T PRK13402 239 ADIFNQLLKGQNPGTYFTPE 258 (368)
T ss_pred chHHHHHhcCCCCceEEecC
Confidence 99999999999999999886
No 39
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.95 E-value=6.9e-28 Score=258.53 Aligned_cols=231 Identities=17% Similarity=0.155 Sum_probs=179.8
Q ss_pred HHHHHHHHHhhhhhhhccCCCc-cccccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccc-----------cCC-
Q psy13351 413 EYSLAVLKAQQLGEALMKGDAY-NINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI-----------QNI- 478 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~~~-~i~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~-----------~~~- 478 (837)
+.+++|+| .||++++.+.. .++.+.+.+++++|++|++.|+++|||+|| |...+.+.... .+.
T Consensus 7 ~~~~iVvK---iGss~lt~~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVssGAv~~G~~~l~~~~~~~~~~~~~~~g~~ 83 (284)
T cd04256 7 HAKRIVVK---LGSAVVTREDECGLALGRLASIVEQVSELQSQGREVILVTSGAVAFGKQRLRHEILLSSSMRQTLKSGQ 83 (284)
T ss_pred cCCEEEEE---eCchhccCCCCCccCHHHHHHHHHHHHHHHHCCCEEEEEeeCcHHhChHHhhhccccccchhhhccccc
Confidence 35778999 67787766544 799999999999999999999999966666 33333322211 111
Q ss_pred ---CcchHHHHHHHHHHHHHHHHHHH---HHHcCCce--eEeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCC---
Q psy13351 479 ---DRSTADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIG--- 546 (837)
Q Consensus 479 ---~~~~~~~~~~~~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~-~~~~~~~~i~~ll~~g~VPVv~G~~G--- 546 (837)
.+..+...+++++.++..+|..| |..+|+++ +.++..++... ........+..+|+.|+|||++|+..
T Consensus 84 ~~~~~~~~~~~qa~aa~gq~~L~~~y~~~f~~~~~~~~q~llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVi~~nD~v~~ 163 (284)
T cd04256 84 LKDMPQMELDGRACAAVGQSGLMALYEAMFTQYGITVAQVLVTKPDFYDEQTRRNLNGTLEELLRLNIIPIINTNDAVSP 163 (284)
T ss_pred ccCCcchhHHHHHHHHcccHHHHHHHHHHHHHcCCcHHHeeeeccccccHHHHHHHHHHHHHHHHCCCEEEEeCCCcccc
Confidence 24556667888888888888886 88888876 23333333221 11223567888999999999996221
Q ss_pred -----------CCCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH----------hccc
Q psy13351 547 -----------NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLE 605 (837)
Q Consensus 547 -----------~~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~----------~G~~ 605 (837)
+..+++|++|+++|..++||.|+++|||||||++||+ .|++++|++++..+... +|+|
T Consensus 164 ~~~~~~~~~~~~~i~d~D~lAa~lA~~l~Ad~Li~lTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM 242 (284)
T cd04256 164 PPEPDEDLQGVISIKDNDSLAARLAVELKADLLILLSDVDGLYDGPPG-SDDAKLIHTFYPGDQQSITFGTKSRVGTGGM 242 (284)
T ss_pred cccccccccccccccChHHHHHHHHHHcCCCEEEEEeCCCeeecCCCC-CCCCeEcccccHhHHHHhhcccccCcccCCc
Confidence 1235799999999999999999999999999999996 69999999998766532 6889
Q ss_pred cchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 606 IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 606 v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
.+|+.|+..|.++|++++|++|..|++|.+++.|+.+||+|.
T Consensus 243 ~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~~~l~G~~~GT~~~ 284 (284)
T cd04256 243 EAKVKAALWALQGGTSVVITNGMAGDVITKILEGKKVGTFFT 284 (284)
T ss_pred HHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHcCCCCCEEeC
Confidence 999999999999999999999999999999999999999983
No 40
>KOG0830|consensus
Probab=99.95 E-value=3e-28 Score=241.42 Aligned_cols=156 Identities=22% Similarity=0.295 Sum_probs=148.7
Q ss_pred CCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCC
Q psy13351 16 NPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT 94 (837)
Q Consensus 16 np~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LT 94 (837)
|.+|.+|+|+.| +|+|||||.+||+.|..|++.|..+ .|++.|..+++++.++.+|.|||..+|...|.+|++||+||
T Consensus 2 ~~~~~~y~~~~~~d~~~i~~~~~twekl~~aar~i~ai-enp~dv~v~ssr~~gqravlkfa~~tgatpiag~ftpg~ft 80 (254)
T KOG0830|consen 2 NFQMEQYIYKRRSDGIYIINLGRTWEKLLLAARAIVAI-ENPADVSVISSRNTGQRAVLKFAAATGATPIAGRFTPGTFT 80 (254)
T ss_pred CcccccccccccCCceEEeeccccHHHHHHHHHHHhhc-cCccceEEEccCCcchhHHHHHHHhhCCCcccccccccccc
Confidence 678999999998 7999999999999999999999998 89999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcchHHHHHhhcCCC
Q psy13351 95 NFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIP 174 (837)
Q Consensus 95 N~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP 174 (837)
|..+- .| +.|.++||+||+.|++++.|++..|+|
T Consensus 81 n~iq~-----------------~f-----------------------------~epr~lvvtdpr~d~q~~~E~s~~n~p 114 (254)
T KOG0830|consen 81 NQIQA-----------------AF-----------------------------REPRLLVVTDPRADHQPLTEASYVNLP 114 (254)
T ss_pred hHHHH-----------------hh-----------------------------cCCceeeecCcccccchhhhhhhcCCc
Confidence 97641 12 699999999999999999999999999
Q ss_pred EEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 175 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 175 ~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
||+|||||+...++|+.|||||++.+||.+++|+|++.+++.+.
T Consensus 115 ~ialcnTDSpL~~VDIAIPcNNKG~hSVgl~ww~LareVLrmrg 158 (254)
T KOG0830|consen 115 TIALCNTDSPLCYVDIAIPCNNKGAHSVGVMWWMLAREVLRMRG 158 (254)
T ss_pred eEEEecCCCccceeeeeeecCCCCcccchhhhhhhhHHHHHHHh
Confidence 99999999999999999999999999999999999999999884
No 41
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.95 E-value=3.3e-27 Score=250.56 Aligned_cols=226 Identities=19% Similarity=0.221 Sum_probs=168.1
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcc-hhhhcccccccCCCcchHHH-HHHHHHHH-
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NICRGISNKIQNIDRSTADY-MGMLATII- 493 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 493 (837)
+|+| .|++.++++...++.+.+.+++++|+++++.|+++||||||| ...+......... ..+.. ..+++.++
T Consensus 2 iViK---~GGs~i~~~~~~~~~~~i~~~~~~i~~~~~~~~~viiV~sg~~~~g~~~~~~~~~~--~~~~~~~~~~~~Gq~ 76 (251)
T cd04242 2 IVVK---VGSSLLTDEDGGLDLGRLASLVEQIAELRNQGKEVILVSSGAVAAGRQRLGLEKRP--KTLPEKQALAAVGQS 76 (251)
T ss_pred EEEE---eCCCeeeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEecCchhhChhhhccCcCC--CchhHHHHHHHHhHH
Confidence 4677 445555554444688999999999999999999999999873 4333222221111 12222 23333333
Q ss_pred -HHHHHHHHHHHcCCceeE--eehhchhhhhhc-cchHHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHHcC
Q psy13351 494 -NSLALFDILNKSGIISHV--MSAISIEKFLES-YIPLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAEIK 564 (837)
Q Consensus 494 -~~~ll~~~L~~~gi~a~~--l~~~~~~~~~~~-~~~~~i~~ll~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~L~ 564 (837)
...++..+|..+|+++.. ++..++...... ...+.+..+++.|+|||+++... ....++|++|+++|.+|+
T Consensus 77 ~l~~~~~~~l~~~Gi~~~q~l~t~~~~~~~~~~~~~~~~i~~ll~~g~iPVv~~~d~v~~~~~~~~~~D~~A~~lA~~l~ 156 (251)
T cd04242 77 LLMALYEQLFAQYGIKVAQILLTRDDFEDRKRYLNARNTLETLLELGVIPIINENDTVATEEIRFGDNDRLSALVAGLVN 156 (251)
T ss_pred HHHHHHHHHHHHcCCeEEEEEEehhHhcchHHHHHHHHHHHHHHHCCCEEEEcCCCCeeeeccccCChHHHHHHHHHHcC
Confidence 344567779999999854 333333211111 12467888899999999985211 123469999999999999
Q ss_pred CcEEEEeeccCccccCCCCCCCCceeccccC--HHHHHH----------hccccchHHHHHHHHhCCCCEEEEEccCcch
Q psy13351 565 AEIILKATKVDGIYNSDPNKCLSAIIYKKIT--FDEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGA 632 (837)
Q Consensus 565 Ad~liilTDVdGVy~~dP~~~~~a~~I~~is--~~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~ 632 (837)
||+|+|+|||||||++||+.+|++++|++++ ++++.+ .|+|.+|+.|+..+.++|++++|+||..|++
T Consensus 157 Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~~ 236 (251)
T cd04242 157 ADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPDV 236 (251)
T ss_pred CCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCCH
Confidence 9999999999999999999999999999999 777654 4778889999999999999999999999999
Q ss_pred HHHHHcCCccceEEE
Q psy13351 633 LKRVIEGKNEGTLVY 647 (837)
Q Consensus 633 i~~al~Ge~~GT~I~ 647 (837)
+.+++.|+..||+|.
T Consensus 237 i~~~l~g~~~GT~i~ 251 (251)
T cd04242 237 LLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHcCCCCCeEeC
Confidence 999999999999983
No 42
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.95 E-value=2.4e-27 Score=251.73 Aligned_cols=207 Identities=23% Similarity=0.297 Sum_probs=174.2
Q ss_pred cchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---------ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Q psy13351 439 SIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---------IQNIDRSTADYMGMLATIINSLALFDILNKSGIIS 509 (837)
Q Consensus 439 ~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a 509 (837)
+.+++++++|+.+.+.|+++|||||||.....+... ....+....+.+...+.+.++.+++++|..+|+++
T Consensus 13 ~~~~~~~~~i~~l~~~~~~~viV~ggg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~a 92 (248)
T cd02115 13 ERLRNLARILVKLASEGGRVVVVHGAGPQITDELLAHGELLGYARGLRITDRETDALAAMGEGMSNLLIAAALEQHGIKA 92 (248)
T ss_pred HHHHHHHHHHHHHHhcCCCEEEEECCCCCcCHHHHHHHHhhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 678999999999988899999999998444332211 11233445566666667778999999999999999
Q ss_pred eEeehhchhh---------hhhccchHHHHHHHhCCCEEEEeCCCCCC--------CCcchHHHHHHHHHcCCcEEEEee
Q psy13351 510 HVMSAISIEK---------FLESYIPLNAIKYLEEGKVVIFAGGIGNP--------FFTTDTTAALRAAEIKAEIILKAT 572 (837)
Q Consensus 510 ~~l~~~~~~~---------~~~~~~~~~i~~ll~~g~VPVv~G~~G~~--------~~s~D~lAa~lA~~L~Ad~liilT 572 (837)
..+++.+... ....++.+.+..+++.|.|||++|+.+.+ ..++|++|+.+|.+|+||+|+++|
T Consensus 93 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~l~~~~ipVv~g~~~~~~~~~~~~~~~~sD~~A~~lA~~l~A~~li~~t 172 (248)
T cd02115 93 VPLDLTQAGFASPNQGHVGKITKVSTDRLKSLLENGILPILSGFGGTDEKETGTLGRGGSDSTAALLAAALKADRLVILT 172 (248)
T ss_pred EEEchHHcCeEeCCCCCcccceeeCHHHHHHHHhCCcEEEecCeEeccCCceeeecCCCHHHHHHHHHHHcCCCEEEEEe
Confidence 9999876522 23455788999999999999999965432 466999999999999999999999
Q ss_pred ccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEE
Q psy13351 573 KVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646 (837)
Q Consensus 573 DVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I 646 (837)
||||||++||+.+|++++|++++++|+.+ .|+|+.|+.|+..+.++|++++|+|+.+|+.+ +++.++..||+|
T Consensus 173 dV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~~~GT~I 248 (248)
T cd02115 173 DVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPDGGGTLI 248 (248)
T ss_pred cCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCCCCCCCC
Confidence 99999999999999999999999987766 68899999999999999999999999999999 999999999986
No 43
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.95 E-value=3.9e-27 Score=262.50 Aligned_cols=232 Identities=22% Similarity=0.248 Sum_probs=176.8
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+| .|++.++++++.++++.+.+++++|+++++.|+++||||||+ ...+.........+..+...+++++.+
T Consensus 8 ~~~iVIK---iGGs~l~~~~~~l~~~~i~~la~~I~~l~~~g~~vViV~sGa-i~~g~~~l~l~~~~~~~~~~qa~aavG 83 (372)
T PRK05429 8 ARRIVVK---VGSSLLTGGGGGLDRARIAELARQIAALRAAGHEVVLVSSGA-VAAGRERLGLPERPKTLAEKQAAAAVG 83 (372)
T ss_pred CCEEEEE---eChhhccCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEcccH-hhhhHhhcCCCCCCCchHHHHHHHHHh
Confidence 3567899 566666667778999999999999999999999999999884 212111111011122333445555444
Q ss_pred HHH---HHHHHHHHcCCceeEe--ehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHH
Q psy13351 494 NSL---ALFDILNKSGIISHVM--SAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAE 562 (837)
Q Consensus 494 ~~~---ll~~~L~~~gi~a~~l--~~~~~~~~~~~~~-~~~i~~ll~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~ 562 (837)
+.. .+..+|..+|+++..+ +..++.......+ ...+..+++.|+|||+++... ....++|++|+++|.+
T Consensus 84 q~~L~~~~~~~l~~~gi~~~qil~t~~d~~~~~~~ln~~~~i~~Ll~~g~IPVi~~nd~v~~~~l~~gd~D~~Aa~lA~~ 163 (372)
T PRK05429 84 QSRLMQAYEELFARYGITVAQILLTRDDLEDRERYLNARNTLRTLLELGVVPIINENDTVATDEIKFGDNDTLSALVANL 163 (372)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEEeehhHhhhhhHhhhHHHHHHHHHHCCCEEEEcCCCccceecccccChHHHHHHHHHH
Confidence 444 4556699999998664 4444432222223 467888899999999985211 1235699999999999
Q ss_pred cCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEccCc
Q psy13351 563 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS 630 (837)
Q Consensus 563 L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~ 630 (837)
|+||.|+|+|||||||++||+.+|++++|+++++ +++.+ .|+|.+|+.|+..|.++|++++|+||..|
T Consensus 164 l~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~ 243 (372)
T PRK05429 164 VEADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREP 243 (372)
T ss_pred cCCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCc
Confidence 9999999999999999999999999999999986 44433 57799999999999999999999999999
Q ss_pred chHHHHHcCCccceEEEEe
Q psy13351 631 GALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 631 ~~i~~al~Ge~~GT~I~~~ 649 (837)
+++.+++.|+..||+|.+.
T Consensus 244 ~~l~~~l~g~~~GT~i~~~ 262 (372)
T PRK05429 244 DVLLRLLAGEAVGTLFLPQ 262 (372)
T ss_pred cHHHHHhcCCCCCEEEeeC
Confidence 9999999999999999986
No 44
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.95 E-value=4.3e-27 Score=261.11 Aligned_cols=229 Identities=20% Similarity=0.199 Sum_probs=173.2
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhh-hcccccccCCCcchHHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNIC-RGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
++|+| .|++.++++...++.+.+..++++|+++++.|+++|||||||..+ +...... -.+..+...+++++.++
T Consensus 2 riVIK---iGgs~l~~~~~~~~~~~i~~la~~I~~l~~~g~~vvlV~sG~~~~g~~~lg~~--~~~~~l~~~qa~aa~Gq 76 (363)
T TIGR01027 2 RIVVK---VGSSSLTGSSGSLDRSHIAELVEQVAALHAAGHEVVIVSSGAIAAGFEALGLP--ERPKTLAEKQALAAVGQ 76 (363)
T ss_pred eEEEE---eccceEeCCCCCcCHHHHHHHHHHHHHHHHCCCeEEEEeCcHHhcCccccCCC--CCccchHHHHHHHHhCh
Confidence 45778 566666665555999999999999999999999999999997332 2222221 12233444555555555
Q ss_pred HHHHH---HHHHHcCCceeEe--ehhchhhhhhccch-HHHHHHHhCCCEEEEeCCC-----CCCCCcchHHHHHHHHHc
Q psy13351 495 SLALF---DILNKSGIISHVM--SAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGI-----GNPFFTTDTTAALRAAEI 563 (837)
Q Consensus 495 ~~ll~---~~L~~~gi~a~~l--~~~~~~~~~~~~~~-~~i~~ll~~g~VPVv~G~~-----G~~~~s~D~lAa~lA~~L 563 (837)
..++. ..|..+|+++..+ +..++.......+. ..+..+++.|.|||++... +....++|++|+++|.++
T Consensus 77 ~~l~~~~~~~l~~~Gi~~aqillt~~d~~~~~~~lna~~~i~~Ll~~g~iPVi~end~v~~~~l~~gd~D~lAa~lA~~l 156 (363)
T TIGR01027 77 VRLMQLYEQLFSQYGIKVAQILLTRADFSDRERYLNARNTLEALLELGVVPIINENDTVATEEIKFGDNDTLSALVAILV 156 (363)
T ss_pred HHHHHHHHHHHHHcCCeEEEEEEeccchhhHHHHHHHHHHHHHHHhCCCEEEEeCCCceeeeecCcCChHHHHHHHHHHc
Confidence 55444 5599999997332 33333222122222 6778889999999998321 122346999999999999
Q ss_pred CCcEEEEeeccCccccCCCCCCCCceeccccCHH--HHHH----------hccccchHHHHHHHHhCCCCEEEEEccCcc
Q psy13351 564 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD--EVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG 631 (837)
Q Consensus 564 ~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~--e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~ 631 (837)
+||.|+|+|||||||++||+.+|+|++|+++++. ++.. .|+|.+|+.|+..|.++|++++|+|+..|+
T Consensus 157 ~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~ 236 (363)
T TIGR01027 157 GADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPE 236 (363)
T ss_pred CCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 9999999999999999999999999999999853 2221 577999999999999999999999999999
Q ss_pred hHHHHHcCCccceEEEEe
Q psy13351 632 ALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 632 ~i~~al~Ge~~GT~I~~~ 649 (837)
++.+++.|+.+||+|.+.
T Consensus 237 ~l~~~l~g~~~GT~i~~~ 254 (363)
T TIGR01027 237 KIADALEGAPVGTLFHAQ 254 (363)
T ss_pred HHHHHhcCCCCcEEEeeC
Confidence 999999999999999986
No 45
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.94 E-value=4.1e-27 Score=250.49 Aligned_cols=221 Identities=19% Similarity=0.217 Sum_probs=173.9
Q ss_pred HHHHHhhhhhhhccC--CCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---cc---CCCcchHHHHHH
Q psy13351 417 AVLKAQQLGEALMKG--DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ---NIDRSTADYMGM 488 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g--~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~---~~~~~~~~~~~~ 488 (837)
+++| .|++++++ .+..++.+.++++++++++++ |+++|||||||+..+..... .. ..++..+...++
T Consensus 2 iVIK---iGGs~l~~~~~~~~~~~~~l~~l~~~l~~l~--g~~vvlVhGgg~~~~~~~~~~g~~~g~~~~~~~~l~~~~~ 76 (252)
T cd04241 2 IILK---LGGSVITDKDRPETIREENLERIARELAEAI--DEKLVLVHGGGSFGHPKAKEYGLPDGDGSFSAEGVAETHE 76 (252)
T ss_pred EEEE---EeceEEEcCCCCCccCHHHHHHHHHHHHhcc--CCCEEEEECCCcccCHHHHHhCCCcCCCchhhhhHHHHHH
Confidence 3567 55555644 356799999999999999887 99999999998655432221 11 113344555555
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEeehhchhh----hhhccchHHHHHHHhCCCEEEEeCCCC------CCCCcchHHHHH
Q psy13351 489 LATIINSLALFDILNKSGIISHVMSAISIEK----FLESYIPLNAIKYLEEGKVVIFAGGIG------NPFFTTDTTAAL 558 (837)
Q Consensus 489 ~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----~~~~~~~~~i~~ll~~g~VPVv~G~~G------~~~~s~D~lAa~ 558 (837)
.... .+..+.++|..+|+++.++++.++.. ....++.+.+..+++.|.|||++|..+ ..++++|++|+.
T Consensus 77 ~~~~-ln~~~~~~l~~~g~~a~~l~~~~~~~~~~g~~~~~~~~~l~~ll~~g~iPVi~~~~~~~~~~~~~~~~~D~~A~~ 155 (252)
T cd04241 77 AMLE-LNSIVVDALLEAGVPAVSVPPSSFFVTENGRIVSFDLEVIKELLDRGFVPVLHGDVVLDEGGGITILSGDDIVVE 155 (252)
T ss_pred HHHH-HHHHHHHHHHHCCCCeEEEChHHeEEecCCeeeeecHHHHHHHHhCCCEEEEcCCeEecCCCCeEEeChHHHHHH
Confidence 4433 34467788999999999999987522 244567899999999999999987322 124579999999
Q ss_pred HHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH------------hccccchHHHHHHHHhCCCCEEEEE
Q psy13351 559 RAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS------------KKLEIMDSTAFSFCRDQKLPIRVFS 626 (837)
Q Consensus 559 lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~------------~G~~v~~~~Aa~~a~~~gi~v~I~n 626 (837)
+|..|+||+|+++|||||||++|| |++++|++++++++.+ .|+|..++.|+..+.++|++++|++
T Consensus 156 lA~~l~A~~li~ltdv~Gv~~~~P---~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~ 232 (252)
T cd04241 156 LAKALKPERVIFLTDVDGVYDKPP---PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFN 232 (252)
T ss_pred HHHHcCCCEEEEEeCCCeeECCCC---CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEe
Confidence 999999999999999999999999 8899999998744322 4789999999999999999999999
Q ss_pred ccCcchHHHHHcCCccceEE
Q psy13351 627 IIKSGALKRVIEGKNEGTLV 646 (837)
Q Consensus 627 g~~~~~i~~al~Ge~~GT~I 646 (837)
|..|+.+.+++.|+.+||+|
T Consensus 233 g~~~~~l~~~l~g~~~GT~i 252 (252)
T cd04241 233 GDKPENLYRALLGNFIGTRI 252 (252)
T ss_pred CCCHHHHHHHHcCCCCceEC
Confidence 99999999999999999986
No 46
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.94 E-value=1e-26 Score=245.18 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=160.4
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI----QNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+++.+++++++|..+.+.|+++|||||| |.....+.... ...+...++.+.......+..+++.+|..+|+++++
T Consensus 13 ~~~~~~~~~~~i~~l~~~g~~~vvV~sg~g~~~~~l~~~~~~~~~~~~~~~~~~i~a~Ge~~~~~l~~~~l~~~g~~a~~ 92 (239)
T cd04261 13 SIERIKRVAERIKKRKKKGNQVVVVVSAMGGTTDELIELAKEISPRPPARELDVLLSTGEQVSIALLAMALNRLGIKAIS 92 (239)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 4578999999999999899999999998 42222222111 112333444443333445777789999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC------CC---cchHHHHHHHHHcCCcEEEEeec
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FF---TTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~------~~---s~D~lAa~lA~~L~Ad~liilTD 573 (837)
+++.+.... +...+.+.+..+++.|.|||++|+.|.+ .+ ++|++|+.+|.+|+||.+++|||
T Consensus 93 l~~~~~~l~~~~~~~~~~i~~~~~~~l~~ll~~~~ipVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~lii~td 172 (239)
T cd04261 93 LTGWQAGILTDGHHGKARIIDIDPDRIRELLEEGDVVIVAGFQGINEDGDITTLGRGGSDTSAVALAAALGADRCEIYTD 172 (239)
T ss_pred echhhCCEEecCCCCcceechhhHHHHHHHHHcCCeEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEeC
Confidence 999875321 1223568899999999999999975532 12 59999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|+++++++++++|+.+ .|.+++|+.|+.+|.++|+|++|.|+.+|+ .||+|+
T Consensus 173 V~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~----------~gt~i~ 239 (239)
T cd04261 173 VDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE----------PGTLIT 239 (239)
T ss_pred CCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC----------CCcEeC
Confidence 9999999999999999999999998877 789999999999999999999999999872 699984
No 47
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.94 E-value=4.4e-26 Score=241.62 Aligned_cols=212 Identities=21% Similarity=0.295 Sum_probs=168.9
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc--ccccCCCcchHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++| .|+++++++. .+.++++|++|+++.. |++++||||||+.++.+. ....+++....+..++.+++++
T Consensus 33 ~ViK---iGGSvitdk~----~~~i~~la~~i~~~~~-~~~vilV~GGG~~~r~~~~~~~~~g~~~~~~~~~~~aa~~ln 104 (262)
T cd04255 33 NVVK---IGGQSIIDRG----AEAVLPLVEEIVALRP-EHKLLILTGGGTRARHVYSIGLDLGMPTGVLAKLGASVSEQN 104 (262)
T ss_pred EEEE---eccceecCCc----HHHHHHHHHHHHHHhC-CCcEEEEECCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Confidence 5788 6777776653 3689999999999876 689999999998886544 2233566667788888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC------------CCCCcchHHHHHHHHH
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------------NPFFTTDTTAALRAAE 562 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G------------~~~~s~D~lAa~lA~~ 562 (837)
+.++...|..+|++++. ..+...+..+|+.|+|||++|+.+ .+++++|++|+++|..
T Consensus 105 ~lv~~~~l~~~g~~~i~-----------~~~~~~l~~lL~~g~vPVi~g~~~~~~~~i~~~~g~~~~~~~D~~Aa~lA~~ 173 (262)
T cd04255 105 AEMLATLLAKHGGSKVG-----------HGDLLQLPTFLKAGRAPVISGMPPYGLWEHPAEEGRIPPHRTDVGAFLLAEV 173 (262)
T ss_pred HHHHHHHHHHcCCCccc-----------cccHHHHHHHHHCCCeEEEeCCcCCCeeeecCCCccCCCCCcHHHHHHHHHH
Confidence 88777778888887631 123346889999999999999742 4677899999999999
Q ss_pred cCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHHh--ccccchHHHHHHHH--hCCCCEEEEEccCcchHHHHHc
Q psy13351 563 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK--KLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIE 638 (837)
Q Consensus 563 L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~~--G~~v~~~~Aa~~a~--~~gi~v~I~ng~~~~~i~~al~ 638 (837)
++||.|+++|||||||++||+.+|++++|++++++++.+. +...++..+...++ +..++++|+||..|+++.+++.
T Consensus 174 l~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~ 253 (262)
T cd04255 174 IGARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALR 253 (262)
T ss_pred hCCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHc
Confidence 9999999999999999999999999999999999887663 22234444444444 2236999999999999999999
Q ss_pred CCccceEEE
Q psy13351 639 GKNEGTLVY 647 (837)
Q Consensus 639 Ge~~GT~I~ 647 (837)
|+.+||+|.
T Consensus 254 g~~~GT~i~ 262 (262)
T cd04255 254 GEHVGTIIR 262 (262)
T ss_pred CCCCceEeC
Confidence 999999983
No 48
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.94 E-value=4.3e-26 Score=240.62 Aligned_cols=201 Identities=25% Similarity=0.333 Sum_probs=161.4
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccc---c-CCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI---Q-NIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+++.+++++++|+.+.+.|++++||||| |.....+.... . ..+...++.+.++....++.+++.+|..+|+++++
T Consensus 13 ~~~~~~~~~~~i~~l~~~g~~~viV~sg~g~~~~~ll~~~~~~~~~~~~~~~~~i~~~Ge~~~~~~~~~~l~~~g~~a~~ 92 (239)
T cd04246 13 DIERIKRVAERIKKAVKKGYQVVVVVSAMGGTTDELIGLAKEVSPRPSPRELDMLLSTGEQISAALLAMALNRLGIKAIS 92 (239)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEECCCCchHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEE
Confidence 4578999999999998889999999996 43322222211 1 11344455554444556788899999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C---cchHHHHHHHHHcCCcEEEEeec
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~---~---s~D~lAa~lA~~L~Ad~liilTD 573 (837)
+++.+.... +...+.+.+..++++|.|||++|+.|.+ . + ++|++|+.+|.+|+||+|+++||
T Consensus 93 l~~~~~~l~~~~~~~~~~~~~~~~~~l~~ll~~g~ipVi~g~~~~~~~g~~~~l~~g~~D~~A~~lA~~l~A~~li~~td 172 (239)
T cd04246 93 LTGWQAGILTDDHHGNARIIDIDPKRILEALEEGDVVVVAGFQGVNEDGEITTLGRGGSDTTAVALAAALKADRCEIYTD 172 (239)
T ss_pred eccccCCEEecCCCCceeechhhHHHHHHHHhcCCEEEEcCccccCCCCCEEecCCCChHHHHHHHHHHcCCCEEEEEEC
Confidence 988875221 2233568899999999999999975421 1 2 48999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|+++++++++++|+.+ .|.+++|+.|+++|.++|+|++|.|+++|+ .||+|+
T Consensus 173 V~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~----------~gt~i~ 239 (239)
T cd04246 173 VDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN----------PGTLIT 239 (239)
T ss_pred CCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC----------CCcEeC
Confidence 9999999999999999999999998876 789999999999999999999999998872 699984
No 49
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.94 E-value=1e-26 Score=233.56 Aligned_cols=223 Identities=22% Similarity=0.282 Sum_probs=170.6
Q ss_pred HHHHhhhhhhhccC--CCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCC-------CcchHHHHHH
Q psy13351 418 VLKAQQLGEALMKG--DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNI-------DRSTADYMGM 488 (837)
Q Consensus 418 v~k~~~~gs~~~~g--~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~-------~~~~~~~~~~ 488 (837)
++| .|+++++. .|..++++.++++|++|+. ..-.++|||||||++.+...... ++ ++.-.....
T Consensus 4 IlK---lGGSvITdK~~p~t~r~~~l~ria~eI~~--~~~~~livVHGgGSFGHp~Ak~~-~~~~~~~~~s~~G~~~~~- 76 (252)
T COG1608 4 ILK---LGGSVITDKDKPRTVREDRLRRIAREISN--GKPEKLIVVHGGGSFGHPAAKEF-GLEGLKNYLSPLGFSLTH- 76 (252)
T ss_pred EEE---ecceeeecCCCcchhhHHHHHHHHHHHhc--CCcccEEEEecCccccCHHHHHh-CccccccccCccchHHHH-
Confidence 566 34445544 5778999999999999985 11136889999997665433321 21 111112222
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEeehhchhhh--hhccc-hHHHHHHHhCCCEEEEeC------CCCCCCCcchHHHHHH
Q psy13351 489 LATIINSLALFDILNKSGIISHVMSAISIEKF--LESYI-PLNAIKYLEEGKVVIFAG------GIGNPFFTTDTTAALR 559 (837)
Q Consensus 489 ~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~--~~~~~-~~~i~~ll~~g~VPVv~G------~~G~~~~s~D~lAa~l 559 (837)
.++..-+..++..|.++|++++...|.++... ...+. .+.+.++++.|+|||++| ..|...+|+|.++.+|
T Consensus 77 ~am~~L~~~V~~~l~~~Gv~av~~~P~s~~~~~gr~~~~~l~~i~~~l~~gfvPvl~GDVv~d~~~g~~IiSGDdIv~~L 156 (252)
T COG1608 77 LAMLELNSIVVDALLDAGVRAVSVVPISFSTFNGRILYTYLEAIKDALEKGFVPVLYGDVVPDDDNGYEIISGDDIVLHL 156 (252)
T ss_pred HHHHHHHHHHHHHHHhcCCccccccCcceeecCCceeechHHHHHHHHHcCCEeeeecceEEcCCCceEEEeccHHHHHH
Confidence 22333455677889999999987667665211 11233 678899999999999999 2345578999999999
Q ss_pred HHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCCCEEEEEccCcch
Q psy13351 560 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGA 632 (837)
Q Consensus 560 A~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~ 632 (837)
|..|++|+++|+|||||||+.||...|+++.++++....... +|||.-|+.++....+.+.+++++||.+|++
T Consensus 157 A~~l~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~n 236 (252)
T COG1608 157 AKELKPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVALGGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPEN 236 (252)
T ss_pred HHHhCCCEEEEEecCCceecCCCCcCccccchhhhhhhhhhcCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHH
Confidence 999999999999999999999999999999999887643332 7899999999988889999999999999999
Q ss_pred HHHHHcCCccceEEE
Q psy13351 633 LKRVIEGKNEGTLVY 647 (837)
Q Consensus 633 i~~al~Ge~~GT~I~ 647 (837)
|.++|+|+.+||+|.
T Consensus 237 i~~~l~G~~vGT~I~ 251 (252)
T COG1608 237 IYRALRGENVGTRID 251 (252)
T ss_pred HHHHhcCCCCceEec
Confidence 999999999999985
No 50
>PRK08841 aspartate kinase; Validated
Probab=99.93 E-value=3.6e-25 Score=247.89 Aligned_cols=205 Identities=21% Similarity=0.267 Sum_probs=163.8
Q ss_pred cccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccccccC-CCcchHHHHHHHHHHHHHHHHHHHHHHcCCce
Q psy13351 435 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQN-IDRSTADYMGMLATIINSLALFDILNKSGIIS 509 (837)
Q Consensus 435 ~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a 509 (837)
.-+.+.+++++++|+.+.+.|+++||||||| +.+.+....... .++.+++.+...+...+..+++.+|+..|+++
T Consensus 13 v~~~~~i~~va~~I~~~~~~g~~vvvVvSa~~~~td~ll~~~~~~~~~~~~~~~d~l~s~GE~~s~~lla~~L~~~Gi~a 92 (392)
T PRK08841 13 VGSIERIQTVAEHIIKAKNDGNQVVVVVSAMAGETNRLLGLAKQVDSVPTARELDVLLSAGEQVSMALLAMTLNKLGYAA 92 (392)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCEEEEECCCchHHHHHHHhhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCe
Confidence 3456789999999999999999999999984 333332221111 12334444444444457888999999999999
Q ss_pred eEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEe
Q psy13351 510 HVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 510 ~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~~------s~D~lAa~lA~~L~Ad~liil 571 (837)
+++++.+.... +...+.+.+..+++.|.|||++||.|.. .+ .+|++|+.+|..|+||.+++|
T Consensus 93 ~~l~~~~~~i~t~~~~~~~~i~~~~~~~i~~ll~~~~vpVv~Gf~g~~~~g~~ttlgrggsD~tAa~lA~~L~Ad~l~i~ 172 (392)
T PRK08841 93 RSLTGAQANIVTDNQHNDATIKHIDTSTITELLEQDQIVIVAGFQGRNENGDITTLGRGGSDTTAVALAGALNADECQIF 172 (392)
T ss_pred EEEehhHcCEEecCCCCCceechhhHHHHHHHHhCCCEEEEeCCcccCCCCCEEEeCCCChHHHHHHHHHHcCCCEEEEE
Confidence 99999885321 2224467888999999999999987631 22 389999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||||++||+.+|+|+++++++++|+.+ .|++++|+.|+++|.++|+|++|.|++++ ..||+|..
T Consensus 173 TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~----------~~GT~I~~ 242 (392)
T PRK08841 173 TDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV----------GEGTLIKG 242 (392)
T ss_pred eCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCC----------CCCeEEEe
Confidence 999999999999999999999999998876 79999999999999999999999999875 35999965
Q ss_pred e
Q psy13351 649 I 649 (837)
Q Consensus 649 ~ 649 (837)
+
T Consensus 243 ~ 243 (392)
T PRK08841 243 E 243 (392)
T ss_pred c
Confidence 4
No 51
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.93 E-value=1.2e-24 Score=245.42 Aligned_cols=322 Identities=17% Similarity=0.207 Sum_probs=219.2
Q ss_pred ccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccc--------------------cccCC-------------
Q psy13351 436 INSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISN--------------------KIQNI------------- 478 (837)
Q Consensus 436 i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~--------------------~~~~~------------- 478 (837)
-+.+.+.+.++.+.+..+.|+++|+|++++ +.+..+.. .....
T Consensus 14 a~~e~i~~va~iv~~~~~~g~~vVVVvSA~~~vTd~Lv~~a~~~~~~~~~~~~~~~~~~~~el~~~~~~~~~~~~~~~~~ 93 (447)
T COG0527 14 ADAERILRVADIVKEDSEEGVKVVVVVSAMGGVTDLLVALAEGAESGRDAVAEQRHRDIASELILDPFIAARLAEVIAEF 93 (447)
T ss_pred CCHHHHHHHHHHHHhhhhcCCcEEEEECCCCCchHHHHHHHhhcccccchhHHHHHHHHHHHHhhcchhhhhHhhhHhhh
Confidence 456789999999999888899999999984 22222221 00011
Q ss_pred -------------CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHH-HHHHHhC
Q psy13351 479 -------------DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLN-AIKYLEE 535 (837)
Q Consensus 479 -------------~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~-i~~ll~~ 535 (837)
++...|.+...+...++.+|+.+|+..|+++..+++.+.+.. +.....+. +..+++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~D~ilS~GE~~Sa~lla~~L~~~Gv~A~~~~~~~~~i~t~~~~~~a~i~~~~~~~~l~~~~~~ 173 (447)
T COG0527 94 KKVLLGIALLGEVSPRERDELLSLGERLSAALLAAALNALGVDARSLDGRQAGIATDSNHGNARILDEDSERRLLRLLEE 173 (447)
T ss_pred hHHhhhhhhccCCCHHHHHHHHhhchHHHHHHHHHHHHhCCCceEEEchHHceeeecCcccccccchhhhhhhHHHHhcC
Confidence 223344444444445899999999999999999999876332 21223445 7788999
Q ss_pred CCEEEEeCCCCCCC---Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hc
Q psy13351 536 GKVVIFAGGIGNPF---FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KK 603 (837)
Q Consensus 536 g~VPVv~G~~G~~~---~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G 603 (837)
|.|||++||+|... ++ +|++|++||.+|+||++.||||||||||+||+..|+|++|+++||+|+.+ .|
T Consensus 174 ~~v~Vv~GF~G~~~~G~~tTLGRGGSD~SA~~laa~l~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~G 253 (447)
T COG0527 174 GKVPVVAGFQGINEDGETTTLGRGGSDYSAAALAAALGADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLG 253 (447)
T ss_pred CcEEEecCceeecCCCCEEEeCCCcHHHHHHHHHHHcCCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCC
Confidence 99999999988542 22 99999999999999999999999999999999999999999999999988 89
Q ss_pred cccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeee---hhh------hhh--hhhHHHhHHHHHHHH
Q psy13351 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI---MII------SDI--KKNTKQKMLNTIKIL 672 (837)
Q Consensus 604 ~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~---~v~------~~i--~~~~~~~m~~~i~~~ 672 (837)
++++||.|+++|.+++||++|.|.++|+ ..||+|+++.. ..+ +.+ +.-....|....-.+
T Consensus 254 AkVLHprav~pa~~~~Ip~~i~~t~~p~---------~~GTlI~~~~~~~~~~v~gIa~~~~~~~i~v~~~~~~~~~g~~ 324 (447)
T COG0527 254 AKVLHPRAVEPAMRSGIPLRIKNTFNPD---------APGTLITAETESDEPVVKGIALDDNVALITVSGPGMNGMVGFA 324 (447)
T ss_pred chhcCHHHHHHHHhcCCcEEEEecCCCC---------CCceEEecCCcCCCCceEEEEeCCCeEEEEEEccCccccccHH
Confidence 9999999999999999999999999984 47999998721 111 100 111112233333334
Q ss_pred HHHHHhhhcCCCCcccc------ceeEEEecccccc-------------------cceeeeeeccCCceEEEecCCcccH
Q psy13351 673 KENLKKVRTGRANIGML------DNIQVKYHEHLTK-------------------LLKIANITLFNSHTISIQPFEKEMS 727 (837)
Q Consensus 673 ~~~l~~irtgr~~p~~l------d~i~V~~~g~~~~-------------------L~~lA~v~~~~~~~l~i~~~d~~~~ 727 (837)
.+-|.-+.-...++.++ +++...+.+...+ -.++|-|++-+..+- -.+...
T Consensus 325 a~vf~~l~~~~i~v~~I~q~~~~~~i~~~v~~~~~~~a~~~l~~~~~~~~~~v~~~~~~a~vsiVG~gm~----~~~gva 400 (447)
T COG0527 325 ARVFGILAEAGINVDLITQSISEVSISFTVPESDAPRALRALLEEKLELLAEVEVEEGLALVSIVGAGMR----SNPGVA 400 (447)
T ss_pred HHHHHHHHHcCCcEEEEEeccCCCeEEEEEchhhHHHHHHHHHHHHhhhcceEEeeCCeeEEEEEccccc----cCcCHH
Confidence 44455555556666666 2223323332221 113333333332211 136688
Q ss_pred HHHHHHHHhcCCCccceec-CCeeEEeCCCCCHHHHHHHHHHHHHHH
Q psy13351 728 SIIKKAINEANLGLNPTIQ-GNIIYVSIPPLTKERREEIVKLIKNIT 773 (837)
Q Consensus 728 ~~I~kaI~~s~l~~~p~~~-~~~i~v~iP~~T~E~R~~l~k~~k~~~ 773 (837)
..+.+|+.+.++|+--... .-.|.+.|+ ++..++.++.+.+.+
T Consensus 401 a~~f~aL~~~~ini~~issSe~~Is~vV~---~~~~~~av~~LH~~~ 444 (447)
T COG0527 401 ARIFQALAEENINIIMISSSEISISFVVD---EKDAEKAVRALHEAF 444 (447)
T ss_pred HHHHHHHHhCCCcEEEEEcCCceEEEEEc---cHHHHHHHHHHHHHH
Confidence 8999999988888777653 456666664 444555555555443
No 52
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.93 E-value=6.6e-25 Score=229.50 Aligned_cols=192 Identities=23% Similarity=0.276 Sum_probs=155.3
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCcchh-hhcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehh
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI 515 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~ 515 (837)
+++.+++++++|+.+ +.|+++|||||||.. ...+.... .+..+....+..+++.+|..+|+++..+++.
T Consensus 13 ~~~~~~~~~~~i~~l-~~g~~vvvV~Sg~~~~t~~l~~~~---------~~~s~Ge~~~~~l~~~~l~~~Gi~a~~l~~~ 82 (227)
T cd04234 13 SAERIKRVADIIKAY-EKGNRVVVVVSAMGGVTDLLIELA---------LLLSFGERLSARLLAAALRDRGIKARSLDAR 82 (227)
T ss_pred CHHHHHHHHHHHHHh-hcCCCEEEEEcCCCcccHHHHHHH---------HHHHHHHHHHHHHHHHHHHHCCCCeEEeCHH
Confidence 346899999999999 889999999998522 11111110 2222333346788899999999999999998
Q ss_pred chhhh---------hhccchHHHHHHHhC-CCEEEEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEeeccCc
Q psy13351 516 SIEKF---------LESYIPLNAIKYLEE-GKVVIFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKATKVDG 576 (837)
Q Consensus 516 ~~~~~---------~~~~~~~~i~~ll~~-g~VPVv~G~~G~~---~~------s~D~lAa~lA~~L~Ad~liilTDVdG 576 (837)
++... ....+.+.+..+++. |.|||++|+.|.+ .+ ++|++|+.+|.+|+||+|+++|||||
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~vpVv~g~i~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tdV~G 162 (227)
T cd04234 83 QAGITTDDNHGAARIIEISYERLKELLAEIGKVPVVTGFIGRNEDGEITTLGRGGSDYSAAALAAALGADEVEIWTDVDG 162 (227)
T ss_pred HCCEEcCCccchhhHHHHHHHHHHHHHhhCCCEEEecCceecCCCCCEEEeeCCCcHHHHHHHHHHhCCCEEEEEECCCc
Confidence 76322 334467889999999 9999999975532 22 38999999999999999999999999
Q ss_pred cccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 577 IYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 577 Vy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||+||+.+|+++++++++++|+.+ .|++++|+.|+++|.++|+|++|.|+.+|+ ..||+|.
T Consensus 163 vy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~---------~~gT~I~ 227 (227)
T cd04234 163 IYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE---------APGTLIT 227 (227)
T ss_pred cCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------CCCCEeC
Confidence 9999999999999999999998877 688999999999999999999999999874 4599984
No 53
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.92 E-value=8e-25 Score=231.30 Aligned_cols=201 Identities=23% Similarity=0.341 Sum_probs=157.0
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-----chhh----hcccc-cccCCCcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-----GNIC----RGISN-KIQNIDRSTADYMGMLATIINSLALFDILNKSG 506 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-----G~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~g 506 (837)
+++.+++++++|+.+.+.|++++||||| |... .+... .....++..++.+.+......+.+++.+|..+|
T Consensus 13 ~~~~~~~~~~~I~~~~~~g~~~vvV~sa~g~~G~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~Ge~~~~~~~~~~l~~~G 92 (244)
T cd04260 13 TKERREQVAKKVKQAVDEGYKPVVVVSAMGRKGDPYATDTLINLVYAENSDISPRELDLLMSCGEIISAVVLTSTLRAQG 92 (244)
T ss_pred CHHHHHHHHHHHHHHHHCCCCeEEEEECCCCCCCchHHHHHHHHHHhhcCCCCHHHHHHHHHHhHHHHHHHHHHHHHhCC
Confidence 4566899999999999999988888753 3211 11111 011233444455544344456668999999999
Q ss_pred CceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCC---CC---C---cchHHHHHHHHHcCCcEE
Q psy13351 507 IISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGN---PF---F---TTDTTAALRAAEIKAEII 568 (837)
Q Consensus 507 i~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~---~~---~---s~D~lAa~lA~~L~Ad~l 568 (837)
++++.+++.+...+ +..++.+.+..+++.|.|||++|+.|. .. + ++|++|+.+|.+|+||++
T Consensus 93 i~a~~l~~~~~~lit~~~~~~~~v~~~~~~~l~~ll~~g~VPVv~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l 172 (244)
T cd04260 93 LKAVALTGAQAGILTDDNYSNAKIIKVNPKKILSALKEGDVVVVAGFQGVTEDGEVTTLGRGGSDTTAAALGAALNAEYV 172 (244)
T ss_pred CCeEEechHHcCEEecCCCCceeeeccCHHHHHHHHhCCCEEEecCCcccCCCCCEEEeCCCchHHHHHHHHHHcCCCEE
Confidence 99999998765321 234567889999999999999997442 11 2 489999999999999999
Q ss_pred EEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceE
Q psy13351 569 LKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTL 645 (837)
Q Consensus 569 iilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~ 645 (837)
++||||||||++||+.+|++++|++++++|+.+ .|.+++|+.|++.|.++|+|++|.|+++|+ .||+
T Consensus 173 ~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~----------~gt~ 242 (244)
T cd04260 173 EIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN----------PGTL 242 (244)
T ss_pred EEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC----------CCCE
Confidence 999999999999999999999999999988877 788999999999999999999999998762 5999
Q ss_pred EE
Q psy13351 646 VY 647 (837)
Q Consensus 646 I~ 647 (837)
|+
T Consensus 243 i~ 244 (244)
T cd04260 243 IT 244 (244)
T ss_pred eC
Confidence 84
No 54
>PRK06635 aspartate kinase; Reviewed
Probab=99.92 E-value=3.1e-24 Score=243.78 Aligned_cols=266 Identities=22% Similarity=0.290 Sum_probs=198.1
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCcc-hhhhccccccc---C-CCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGGG-NICRGISNKIQ---N-IDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGGG-~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+++.+++++++|..+.+.|++++|||||| .....+..... . .+...++.+.+++...++.+++.+|..+|+++++
T Consensus 15 ~~~~~~~~~~~i~~~~~~g~~~vvV~sg~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~l~~~g~~a~~ 94 (404)
T PRK06635 15 DVERIKRVAERVKAEVEAGHQVVVVVSAMGGTTDELLDLAKEVSPLPDPRELDMLLSTGEQVSVALLAMALQSLGVKARS 94 (404)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCcHHHHHHHHHHhccCCCHHHHHHHhhhhHHHHHHHHHHHHHhCCCCeEE
Confidence 46789999999999988899999999974 22221111111 1 1334445444444456788899999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C---cchHHHHHHHHHcCCcEEEEeec
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~---~---s~D~lAa~lA~~L~Ad~liilTD 573 (837)
+++.++... +...+.+.+..+++.|.|||++|+.|.+ . + ++|++|+++|..|+||.+++|||
T Consensus 95 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~ipVi~g~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~~~tD 174 (404)
T PRK06635 95 FTGWQAGIITDSAHGKARITDIDPSRIREALDEGDVVVVAGFQGVDEDGEITTLGRGGSDTTAVALAAALKADECEIYTD 174 (404)
T ss_pred eChhhCCEEecCCCCceEeeecCHHHHHHHHhCCCEEEecCccEeCCCCCEEecCCCChHHHHHHHHHHhCCCEEEEEEc
Confidence 998876322 2234678899999999999999976633 1 2 48999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEee
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~ 650 (837)
|||||++||+.+|+++++++++++|+.+ .|++++++.|+.++.++|+|++|.|++++ ..||+|.++.
T Consensus 175 V~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~----------~~gT~i~~~~ 244 (404)
T PRK06635 175 VDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD----------NPGTLITGEE 244 (404)
T ss_pred CCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC----------CCCCEEeeCC
Confidence 9999999999999999999999998877 78999999999999999999999999864 3599997642
Q ss_pred ehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHH
Q psy13351 651 IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSII 730 (837)
Q Consensus 651 ~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I 730 (837)
. ..| ....+..|. -..+++.|++.+ -+-.+..+..|
T Consensus 245 ~-----------~~~-------------------~~~~i~~I~--------~~~~v~~Isv~g------~~~~~g~l~~i 280 (404)
T PRK06635 245 E-----------EIM-------------------EQPVVTGIA--------FDKDEAKVTVVG------VPDKPGIAAQI 280 (404)
T ss_pred c-----------ccc-------------------ccCceEEEE--------ecCCeEEEEECC------CCCCccHHHHH
Confidence 1 000 001111221 245677777755 13457788999
Q ss_pred HHHHHhcCCCccceecC------CeeEEeCCC
Q psy13351 731 KKAINEANLGLNPTIQG------NIIYVSIPP 756 (837)
Q Consensus 731 ~kaI~~s~l~~~p~~~~------~~i~v~iP~ 756 (837)
-+++.++++++.-...+ ..+.+.+|.
T Consensus 281 ~~~L~~~~I~i~~is~s~~~~~~~~is~~v~~ 312 (404)
T PRK06635 281 FGALAEANINVDMIVQNVSEDGKTDITFTVPR 312 (404)
T ss_pred HHHHHHcCCeEEEEEecCCCCCceeEEEEEcH
Confidence 99999888877655332 467777754
No 55
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.92 E-value=7.2e-25 Score=234.78 Aligned_cols=223 Identities=22% Similarity=0.261 Sum_probs=167.1
Q ss_pred HHHHHhhhhhhhccCC---CccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccccccCCCcchHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGD---AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGML 489 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~---~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~ 489 (837)
+++++ +|.++...+ ....+.+.++..+++|+++.+.|++++||||+| +.+++........++.+++.+.+.
T Consensus 2 ivial--gGnal~~~~~~~~~~~q~~~~~~~a~~i~~l~~~g~~vvi~hGnGPqvG~i~~~~~~~~~~~~~~pld~~~a~ 79 (308)
T cd04235 2 IVVAL--GGNALLRRGEPGTAEEQRENVKIAAKALADLIKNGHEVVITHGNGPQVGNLLLQNEAAAEKVPAYPLDVCGAM 79 (308)
T ss_pred EEEEe--cHHHhCCCCCCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCcchhcch
Confidence 45565 677776544 356888899999999999999999999999998 777765544323345556666666
Q ss_pred HHHHHHHHHHHH----HHHcCCceeEeehhchh-----------------hh----------------------------
Q psy13351 490 ATIINSLALFDI----LNKSGIISHVMSAISIE-----------------KF---------------------------- 520 (837)
Q Consensus 490 ~~~~~~~ll~~~----L~~~gi~a~~l~~~~~~-----------------~~---------------------------- 520 (837)
.+|+.+++|+.+ |...|++....+..+.. .+
T Consensus 80 ~~G~ig~~~~~al~~~l~~~~~~~~v~t~~t~~~V~~~dpaf~~ptKpiG~~y~~~~a~~~~~~~g~~~~~d~~~g~rrv 159 (308)
T cd04235 80 SQGMIGYMLQQALDNELPKRGIDKPVVTLVTQVVVDANDPAFKNPTKPIGPFYSEEEAEELAAEKGWTFKEDAGRGYRRV 159 (308)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCCceEEEEeEEEEcCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEeCCCCceee
Confidence 666666655444 67777766444332210 00
Q ss_pred ------hhccchHHHHHHHhCCCEEEEeCCCCCCCCc-------------chHHHHHHHHHcCCcEEEEeeccCccccCC
Q psy13351 521 ------LESYIPLNAIKYLEEGKVVIFAGGIGNPFFT-------------TDTTAALRAAEIKAEIILKATKVDGIYNSD 581 (837)
Q Consensus 521 ------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s-------------~D~lAa~lA~~L~Ad~liilTDVdGVy~~d 581 (837)
..-++.+.+..+++.|+|||++|+.|+|.++ +|++|+++|..|+||.|+++|||||||+++
T Consensus 160 V~SP~P~~iv~~~~I~~Ll~~g~IpI~~GggGiPv~~~~~~~~gveaVid~D~~AallA~~l~Ad~LiilTdVdGVy~~~ 239 (308)
T cd04235 160 VPSPKPKDIVEIEAIKTLVDNGVIVIAAGGGGIPVVREGGGLKGVEAVIDKDLASALLAEEINADLLVILTDVDNVYINF 239 (308)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEECCCccCEEEcCCceeeeeeccCccHHHHHHHHHcCCCEEEEEecCCeEECCC
Confidence 0112356788899999999999988877543 499999999999999999999999999976
Q ss_pred CCCCCCceeccccCHHHHHH--------hccccchHHHHH-HHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 582 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFS-FCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 582 P~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~-~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
| .|++++|++++++++.+ .|+|.+|+.|+. ++.+.+.+++|++ ++++.++|.|+ .||+|.
T Consensus 240 ~--~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~aL~G~-~GT~I~ 308 (308)
T cd04235 240 G--KPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAALEGK-AGTVIV 308 (308)
T ss_pred C--CCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHHHCCC-CCeEEC
Confidence 5 48999999999988765 478999998774 5555567788865 67799999998 799983
No 56
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.92 E-value=1.3e-24 Score=234.37 Aligned_cols=224 Identities=21% Similarity=0.241 Sum_probs=167.5
Q ss_pred HHHHHHhhhhhhhccCC-Cc--cccccchhhhhhhhHHhhhcCceEEEEeCcchh----hhcccccccCCCcchHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGD-AY--NINSSIIKNIISEISEIVSCGIELAIVIGGGNI----CRGISNKIQNIDRSTADYMGM 488 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~-~~--~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~----~~~~~~~~~~~~~~~~~~~~~ 488 (837)
|+|+|+ +|+++...+ .. .++...++.+|++|++|.+.|++++||||||.. ..+........++.+++.+.+
T Consensus 2 riVikl--GgnaL~~~g~~~~~~~~~~~i~~~a~~ia~l~~~g~~vviv~gngpqvG~~~l~~~~~~~~~~~~p~~~~~A 79 (310)
T TIGR00746 2 RVVVAL--GGNALLQRGEKGSAEAQRDNVRQTAPQIAKLIKRGYELVITHGNGPQVGNLLLQNQAADSEVPAMPLDVLGA 79 (310)
T ss_pred eEEEEE--CHHHhCCCCCCCCcchhHHHHHHHHHHHHHHHHCCCEEEEEECChHHHHHHHhccccccccCCCCcchHHHH
Confidence 567785 566665432 32 466889999999999999999999999999733 333222222344556788888
Q ss_pred HHHHHHHHHHHHHHH----HcCCce--------eEeehhc--hhhhh---------------------------------
Q psy13351 489 LATIINSLALFDILN----KSGIIS--------HVMSAIS--IEKFL--------------------------------- 521 (837)
Q Consensus 489 ~~~~~~~~ll~~~L~----~~gi~a--------~~l~~~~--~~~~~--------------------------------- 521 (837)
..+++.+++++.+|. .+|++. +.++..| +....
T Consensus 80 ~~qg~lg~~~~~~l~~~l~~~g~~~~v~~~vtqv~v~~~D~af~~p~k~ig~~y~~~~a~~~~~~~~~~~~~d~~~~~rr 159 (310)
T TIGR00746 80 MSQGMIGYMLQQALNNELPKRGMEKPVATVLTQTIVDPKDPAFQNPTKPIGPFYTEEEAKRLAAEKGWIVKEDAGRGWRR 159 (310)
T ss_pred hhHHHHHHHHHHHHHHHHHhcCCCccceEEEEEEEECCCcccccCCCCcCCCCcCHHHHHHHHHHcCCeEeecCCCcceE
Confidence 888888888877766 777433 3333333 21110
Q ss_pred --------hccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeeccCccccC
Q psy13351 522 --------ESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYNS 580 (837)
Q Consensus 522 --------~~~~~~~i~~ll~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~ 580 (837)
..++.+.+..+|+.|.++|.+|+.|.|. +++|++|+++|..|+||+|+++|||||||++
T Consensus 160 vv~sp~p~~iv~~~~I~~LL~~G~iVI~~ggggiPvi~e~~~~~g~e~~id~D~lAa~lA~~l~AD~LIiLTDVdGVy~~ 239 (310)
T TIGR00746 160 VVPSPRPKDIVEAETIKTLVENGVIVISSGGGGVPVVLEGAELKGVEAVIDKDLASEKLAEEVNADILVILTDVDAVYIN 239 (310)
T ss_pred eecCCCchhhccHHHHHHHHHCCCEEEeCCCCCcCEEecCCeEEeeEecCCHHHHHHHHHHHhCCCEEEEEeCCCceeCC
Confidence 1134568889999999777776666553 2699999999999999999999999999997
Q ss_pred CCCCCCCceeccccCHHHHHH--------hccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 581 DPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 581 dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++ .|++++|++++.+|+.. .|+|.+|+.|| +++.+.+.+++|++ ++++.++|.|+ .||+|.
T Consensus 240 ~~--~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~l~G~-~GT~I~ 309 (310)
T TIGR00746 240 YG--KPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEALEGK-AGTRVT 309 (310)
T ss_pred CC--CCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHHHCCC-CCcEEe
Confidence 43 58899999999988765 38899999888 66666778899986 67899999999 999996
No 57
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.92 E-value=1.6e-24 Score=231.96 Aligned_cols=200 Identities=17% Similarity=0.228 Sum_probs=161.2
Q ss_pred hhhhhhHHhhhcCceEEEEeCcchhhhcccccc---------------cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13351 443 NIISEISEIVSCGIELAIVIGGGNICRGISNKI---------------QNIDRSTADYMGMLATIINSLALFDILNKSGI 507 (837)
Q Consensus 443 ~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 507 (837)
+++.+|+.+.+.|.++|||||||.......... +-.++.+++.+.+... ..+..+.+.|.++|+
T Consensus 16 ~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~g~~~rvt~~~~l~~~~~a~~-~ln~~lv~~L~~~Gv 94 (268)
T PRK14058 16 DALIDVASLWADGERVVLVHGGSDEVNELLERLGIEPRFVTSPSGVTSRYTDRETLEVFIMAMA-LINKQLVERLQSLGV 94 (268)
T ss_pred HHHHHHHHHHHCCCCEEEEeCCHHHHHHHHHHcCCCceEEeCCCCCceEeCCHHHHHHHHHHHH-HHHHHHHHHHHhCCC
Confidence 568999999889999999999985544322211 1125556666665555 555556679999999
Q ss_pred ceeEeehhchhhh--------------------------hhccchHHHHHHHhCCCEEEEeCCC----CCC-CCcchHHH
Q psy13351 508 ISHVMSAISIEKF--------------------------LESYIPLNAIKYLEEGKVVIFAGGI----GNP-FFTTDTTA 556 (837)
Q Consensus 508 ~a~~l~~~~~~~~--------------------------~~~~~~~~i~~ll~~g~VPVv~G~~----G~~-~~s~D~lA 556 (837)
+++++++.+.+.+ +..++.+.+..++++|.|||++|.. |.. ++++|++|
T Consensus 95 ~a~~l~~~~~~l~~~~~~~~~~~~~~g~~~~~d~g~~g~v~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~~i~~D~~A 174 (268)
T PRK14058 95 NAVGLSGLDGGLLEGKRKKAVRVVEEGKKKIIRGDYTGKIEEVNTDLLKLLLKAGYLPVVAPPALSEEGEPLNVDGDRAA 174 (268)
T ss_pred CccccCcccCCEEEEEEecccccccCCcceeccCCceeEEEEECHHHHHHHHHCCCEEEEeCceECCCCcEEecCHHHHH
Confidence 9999999875221 2346788999999999999999832 122 35799999
Q ss_pred HHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hccccchHHHHHHHHhCCC-CEEEEEccCc
Q psy13351 557 ALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIKS 630 (837)
Q Consensus 557 a~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~~ 630 (837)
+.+|.+|+||+|+|+|||||||++||+ ++++|++++.+|+.+ .|+|..|+.|+..+.++|+ +++|++|..|
T Consensus 175 ~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~ 251 (268)
T PRK14058 175 AAIAGALKAEALVLLSDVPGLLRDPPD---EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVD 251 (268)
T ss_pred HHHHHHcCCCEEEEEeCChhhccCCCC---CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCc
Confidence 999999999999999999999999884 478999999887765 6999999999999999999 7999999999
Q ss_pred chHHHHHcCCccceEEEE
Q psy13351 631 GALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 631 ~~i~~al~Ge~~GT~I~~ 648 (837)
+++.++|.|+ ||+|.+
T Consensus 252 ~~l~~~l~G~--GT~I~~ 267 (268)
T PRK14058 252 DPISAALAGE--GTVIVN 267 (268)
T ss_pred chHHHHhCCC--ceEEec
Confidence 9999999886 999975
No 58
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.92 E-value=4.4e-24 Score=222.09 Aligned_cols=214 Identities=19% Similarity=0.184 Sum_probs=177.1
Q ss_pred CCCccccccchhhhhhhhHHhhhcCceEEEEeCcchh---hhccccccc-------CCCcchHHHHHHHHHHHHHHHHHH
Q psy13351 431 GDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI---CRGISNKIQ-------NIDRSTADYMGMLATIINSLALFD 500 (837)
Q Consensus 431 g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~---~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~ll~~ 500 (837)
|+....+++..++++++|+.|+..|.++|||||||.. .+....... -.++.+++...++..+..+..+++
T Consensus 10 GG~~~~~~~l~~~~~~di~lL~~~G~~~VvVHGggp~I~~~l~~~gie~~f~~glRvTd~~tlevv~mvl~G~vNk~iva 89 (265)
T COG0548 10 GGSAMEDENLLEAFASDIALLKSVGIRPVVVHGGGPQIDEMLAKLGIEPEFVKGLRVTDAETLEVVEMVLGGTVNKEIVA 89 (265)
T ss_pred CceeecCchHHHHHHHHHHHHHHCCCcEEEEeCCchHHHHHHHHcCCCCeeeCCEEcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4444566778999999999999999999999999933 332223222 237888999999999898999999
Q ss_pred HHHHcCCceeEeehhchhhh------------------hhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHH
Q psy13351 501 ILNKSGIISHVMSAISIEKF------------------LESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAA 557 (837)
Q Consensus 501 ~L~~~gi~a~~l~~~~~~~~------------------~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa 557 (837)
.|+.+|..++++++.|.+.+ +..++++.+..++++|+|||+++. .|.. ++++|++|+
T Consensus 90 ~l~~~g~~avGlsg~Dg~li~A~~~~~~~~id~g~vG~i~~Vn~~~i~~ll~~~~IpViapia~~~~G~~~NvnaD~~A~ 169 (265)
T COG0548 90 RLSKHGGQAVGLSGVDGNLVTAKKLDVDDGVDLGYVGEIRKVNPELIERLLDNGAIPVIAPIAVDEDGETLNVNADTAAG 169 (265)
T ss_pred HHHHhCCcceeeeecCCCEEEEEEcccccccccceeeeEEEECHHHHHHHHhCCCceEEecceECCCCcEEeeCHHHHHH
Confidence 99999999999999885221 456789999999999999999982 2222 467999999
Q ss_pred HHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCC-CEEEEEccC
Q psy13351 558 LRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIK 629 (837)
Q Consensus 558 ~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~ 629 (837)
.+|.+|+|++|+++|||+|||+++|+ | .++++++.+++.+ .|+|++++.+|..|.+.|+ +++|+||..
T Consensus 170 ~iA~aLkAekLi~ltdv~Gvl~~~~~--~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~ 245 (265)
T COG0548 170 ALAAALKAEKLILLTDVPGVLDDKGD--P--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRV 245 (265)
T ss_pred HHHHHcCCCeEEEEeCCcccccCCCC--c--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCC
Confidence 99999999999999999999998775 3 6888888877765 5899999999999999999 699999999
Q ss_pred cchHHH-HHcCCccceEEEE
Q psy13351 630 SGALKR-VIEGKNEGTLVYE 648 (837)
Q Consensus 630 ~~~i~~-al~Ge~~GT~I~~ 648 (837)
|+.+.. ++.+..+||.|.+
T Consensus 246 ~~~ll~eLFt~~giGT~i~~ 265 (265)
T COG0548 246 PHSLLLELFTRDGIGTMIVR 265 (265)
T ss_pred cchHHHHHhcCCCcceEecC
Confidence 999665 6778889999863
No 59
>KOG1154|consensus
Probab=99.92 E-value=5.7e-25 Score=217.96 Aligned_cols=233 Identities=19% Similarity=0.198 Sum_probs=175.2
Q ss_pred HHHHHHHHHhhhhhhhccCC-CccccccchhhhhhhhHHhhhcCceEEEEeCcc-hhhh---ccccccc-----C-CCcc
Q psy13351 413 EYSLAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGG-NICR---GISNKIQ-----N-IDRS 481 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~-~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG-~~~~---~~~~~~~-----~-~~~~ 481 (837)
...++|+| .||++.+++ .......++..+++++.+|+..|+++++|+||| ...+ .+..... . -++.
T Consensus 8 ka~rIVVK---LGSavit~e~~~~laLgrla~IVEqV~~L~~~G~evilVSSGaVA~G~qrLr~~~~~s~s~r~~l~~~~ 84 (285)
T KOG1154|consen 8 KAYRIVVK---LGSAVITREDTCGLALGRLASIVEQVSELQRMGREVILVSSGAVAFGRQRLRQELLPSSSMRQTLKPQS 84 (285)
T ss_pred cceEEEEE---ecceEEECCCCccchHHHHHHHHHHHHHHHhcCceEEEEecchhhhhHHHhhhhhccchhHHHhhCCcc
Confidence 34578899 677888664 456888999999999999999999999999996 2221 1111110 0 1334
Q ss_pred hHHHHHHHHHHHHHHHHHHH---HHHcCCce--eEeehhchhhhhhccc-hHHHHHHHhCCCEEEEeCCCCC-----CCC
Q psy13351 482 TADYMGMLATIINSLALFDI---LNKSGIIS--HVMSAISIEKFLESYI-PLNAIKYLEEGKVVIFAGGIGN-----PFF 550 (837)
Q Consensus 482 ~~~~~~~~~~~~~~~ll~~~---L~~~gi~a--~~l~~~~~~~~~~~~~-~~~i~~ll~~g~VPVv~G~~G~-----~~~ 550 (837)
.+...+++++.+++.+|+-| |..+|+.. +.++-.|+..-....+ ...+.++|..|.|||+...... ++-
T Consensus 85 ~l~e~rA~AAvGQ~~Lmalye~lF~Qy~~~iAQvLvT~~Di~d~~~r~Nl~~Ti~eLL~m~viPIvNeNDavs~~~~~~~ 164 (285)
T KOG1154|consen 85 ELAEKRACAAVGQSGLMALYETLFTQYGITIAQVLVTRNDILDEQQRKNLQNTISELLSMNVIPIVNENDAVSPREIPFG 164 (285)
T ss_pred chhhHHHHHHhCcchHHHHHHHHHHHhccchheeeecCcchhhHHHHHHHHHHHHHHHhCCceeeecCCCccCCcccccC
Confidence 56777788888888888877 88888875 4444444432211112 3478899999999999642211 111
Q ss_pred ---cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHH-H----------hccccchHHHHHHHH
Q psy13351 551 ---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFCR 616 (837)
Q Consensus 551 ---s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~-~----------~G~~v~~~~Aa~~a~ 616 (837)
.||++||.+|.+++||+|+++|||||+||.+|.. ..+++++..+..+-. . +|||-.|+.||..|.
T Consensus 165 D~~dNDsLsA~laaei~ADlLilLsDVdglYt~PPd~-~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~ 243 (285)
T KOG1154|consen 165 DSSDNDSLAAILAAEIKADLLILLSDVDGLYTGPPDA-DPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNAL 243 (285)
T ss_pred CCCcccHHHHHHHHHhccCEEEEEecccccccCCCCC-CcceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHh
Confidence 1999999999999999999999999999966653 457788777654332 1 689999999999999
Q ss_pred hCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 617 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 617 ~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
..|++++|+||..|++|.+++.|..+||.|...
T Consensus 244 ~~Gv~viI~~g~~p~~I~~iv~g~kvgt~f~~~ 276 (285)
T KOG1154|consen 244 NAGVSVIITNGDAPENITDIVEGKKVGTFFEQL 276 (285)
T ss_pred cCCceEEEeCCCChHHHHHHHhhhhhhhhhhhc
Confidence 999999999999999999999999999999754
No 60
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.91 E-value=6.5e-24 Score=240.98 Aligned_cols=203 Identities=22% Similarity=0.255 Sum_probs=162.5
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCcch-hhhcccccc-----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGGGN-ICRGISNKI-----QNIDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGGG~-~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++.+++++++|+.+.+.|++++||||||. ....+.... ...+....+.+..++...++.+++.+|..+|++++
T Consensus 14 ~~~~i~~~~~~i~~~~~~g~~~vvV~sg~~~~t~~l~~~~~~~~~~~~~~~~~~~i~~~Ge~~s~~~~~~~l~~~g~~a~ 93 (401)
T TIGR00656 14 SGERIKNAARIVLKEKKEGHKVVVVVSAMSGVTDALVEISEKAIRDAITPRERDELVSHGERLSSALFSGALRDLGVKAI 93 (401)
T ss_pred CHHHHHHHHHHHHHHHHcCCCEEEEEeCCCCChHHHHHHHHHHhccCCChHHHHHHhhHHHHHHHHHHHHHHHhCCCceE
Confidence 457899999999999889999999999962 211111111 11233334555555555678999999999999999
Q ss_pred Eeehhchhhh---------hhccch-HHHHHHHhCCCEEEEeCCCCCC--C-C------cchHHHHHHHHHcCCcEEEEe
Q psy13351 511 VMSAISIEKF---------LESYIP-LNAIKYLEEGKVVIFAGGIGNP--F-F------TTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 511 ~l~~~~~~~~---------~~~~~~-~~i~~ll~~g~VPVv~G~~G~~--~-~------s~D~lAa~lA~~L~Ad~liil 571 (837)
.+++.+.... +...+. +.+..+++.|.|||++|+.|.. + . .+|++|+.+|..|+||.+++|
T Consensus 94 ~l~~~~~~~~t~~~~~~~~~~~~~~~~~l~~~l~~~~vpVi~g~~~~~~~g~~~~lgrg~sD~~A~~lA~~l~A~~l~i~ 173 (401)
T TIGR00656 94 WLDGGEAGIITDDNFGNAKIDIIATEERLLPLLEEGIIVVVAGFQGATEKGYTTTLGRGGSDYTAALLAAALKADRVDIY 173 (401)
T ss_pred EeccccceEEeCCCCCceEeeecchHHHHHHHHhCCCEEEecCcceeCCCCCEeecCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 9987765211 222334 7899999999999999976521 2 1 279999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||||++||+.+|+++++++++++|+.+ .|++++|+.|+.+|.++++|++|.|+++|+ .||+|.+
T Consensus 174 tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~----------~gT~I~~ 243 (401)
T TIGR00656 174 TDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE----------EGTLITN 243 (401)
T ss_pred ECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC----------CCeEEEe
Confidence 999999999999999999999999999987 799999999999999999999999999873 4999975
Q ss_pred e
Q psy13351 649 I 649 (837)
Q Consensus 649 ~ 649 (837)
.
T Consensus 244 ~ 244 (401)
T TIGR00656 244 S 244 (401)
T ss_pred C
Confidence 4
No 61
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.91 E-value=5.6e-24 Score=255.40 Aligned_cols=235 Identities=18% Similarity=0.186 Sum_probs=179.0
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCc-chhhhccccccc----C----CCcchHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQ----N----IDRSTAD 484 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~----~----~~~~~~~ 484 (837)
.+++|+| .||++++.+.+.++.+.+.+++++|+++++.|+++|||+|| |...+....... + -.+....
T Consensus 7 ~~~iViK---iGss~lt~~~~~~~~~~l~~l~~~i~~l~~~g~~vilVsSGA~a~G~~~~~~~~~~~~~~~~~~~~~~~~ 83 (715)
T TIGR01092 7 VKRIVVK---VGTAVVTRGDGRLALGRLGSICEQLSELNSDGREVILVTSGAVAFGRQRLRHRILVNSSFADLQKPQPEL 83 (715)
T ss_pred CCEEEEE---eCcceeECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEccchHHhchHHhccchhccccccccCCCCchH
Confidence 4678999 67777777677899999999999999999999999997776 333333222211 0 1234455
Q ss_pred HHHHHHHHHHHHHHHHH---HHHcCCcee--Eeehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCCCC----------
Q psy13351 485 YMGMLATIINSLALFDI---LNKSGIISH--VMSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP---------- 548 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~---L~~~gi~a~--~l~~~~~~~~-~~~~~~~~i~~ll~~g~VPVv~G~~G~~---------- 548 (837)
..+++++.+++.++..| |..+++.+. .++..++... ........+..+|+.|.|||+++.....
T Consensus 84 ~~qa~aa~gq~~L~~~y~~~f~~~~i~~aQ~Llt~~d~~~~~~~~~~~~~l~~lL~~g~iPVin~nD~V~~~~~~~~~~~ 163 (715)
T TIGR01092 84 DGKACAAVGQSGLMALYETMFTQLDITAAQILVTDLDFRDEQFRRQLNETVHELLRMNVVPVVNENDAVSTRAAPYSDSQ 163 (715)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCeeEEEEechhhcccHHHHHHHHHHHHHHHHCCCEEEEcCCCccccccccccccc
Confidence 67777777777777665 777787763 2333332221 1122356888999999999998622111
Q ss_pred --CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHH-H----------hccccchHHHHHHH
Q psy13351 549 --FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-S----------KKLEIMDSTAFSFC 615 (837)
Q Consensus 549 --~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~-~----------~G~~v~~~~Aa~~a 615 (837)
++++|++|+++|.+++||+|+++|||||||++||+ +|++++|++++..+.. . +|||..|+.|+..|
T Consensus 164 g~~~d~D~lAa~lA~~l~Ad~LiilTDVdGVy~~dP~-~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a 242 (715)
T TIGR01092 164 GIFWDNDSLAALLALELKADLLILLSDVEGLYDGPPS-DDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWA 242 (715)
T ss_pred ceecchHHHHHHHHHHcCCCEEEEEeCCCeeeCCCCC-CCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHH
Confidence 35699999999999999999999999999999996 6999999988754322 1 58899999999999
Q ss_pred HhCCCCEEEEEccCcchHHHHHcCCccceEEEEeeeh
Q psy13351 616 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIM 652 (837)
Q Consensus 616 ~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~~ 652 (837)
.++|++++|+||..|+.|.+++.|+..||+|.++.+|
T Consensus 243 ~~~gi~v~I~~g~~~~~l~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 243 AYGGTPVIIASGTAPKNITKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred HHCCCeEEEeCCCCcchHHHHhcCCCCceEecccchh
Confidence 9999999999999999999999999999999887544
No 62
>PRK07431 aspartate kinase; Provisional
Probab=99.91 E-value=7.1e-23 Score=242.78 Aligned_cols=325 Identities=18% Similarity=0.206 Sum_probs=214.3
Q ss_pred ccccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccccCC-CcchHHHHHHHHH-HH--HHHHHHHHHHHcCCcee
Q psy13351 436 INSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKIQNI-DRSTADYMGMLAT-II--NSLALFDILNKSGIISH 510 (837)
Q Consensus 436 i~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~--~~~ll~~~L~~~gi~a~ 510 (837)
.+++.++++++.|+.+.+.|+++|||||| |.....+......+ ++...+...++.+ |+ +..+++.+|..+|++++
T Consensus 14 ~~~~~i~~~a~~I~~~~~~g~~vvvV~sa~g~~t~~l~~~~~~~t~~~~~~~~~~~ls~Ge~~s~~l~~~~l~~~gi~a~ 93 (587)
T PRK07431 14 GSVERIQAVAQRIARTKEAGNDVVVVVSAMGKTTDELVKLAKEISSNPPRREMDMLLSTGEQVSIALLSMALHELGQPAI 93 (587)
T ss_pred CCHHHHHHHHHHHHHHHHCCCCEEEEECCCCchhHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHCCCCeE
Confidence 57789999999999998899999999996 54433322221111 2223333444444 33 56677788999999999
Q ss_pred Eeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCCC-----Cc------chHHHHHHHHHcCCcEEEE
Q psy13351 511 VMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-----FT------TDTTAALRAAEIKAEIILK 570 (837)
Q Consensus 511 ~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~-----~s------~D~lAa~lA~~L~Ad~lii 570 (837)
++++.++... +...+.+.+..+++.|.|||++|+.|... .+ +|++|+++|..|+||++++
T Consensus 94 ~l~~~~~~~~~~~~~~~~~i~~~~~~~l~~~l~~g~vpVv~g~~g~~~~~~g~~~~lgrggsD~~A~~lA~~l~A~~l~i 173 (587)
T PRK07431 94 SLTGAQVGIVTESEHGRARILEIKTDRIQRHLDAGKVVVVAGFQGISLSSNLEITTLGRGGSDTSAVALAAALGADACEI 173 (587)
T ss_pred EechhHcCeEecCCCCceeeeeccHHHHHHHHhCCCeEEecCCcCCCCCCCCCEeecCCCchHHHHHHHHHHcCCCEEEE
Confidence 9999876322 22335678999999999999999766421 22 7999999999999999999
Q ss_pred eeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 571 ATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 571 lTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
||||||||++||+.+|++++|++++++|+.+ .|.+++|+.|+++|.++|+|++|.|++. +..||+|.
T Consensus 174 ~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~----------~~~GT~i~ 243 (587)
T PRK07431 174 YTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS----------DAPGTLVT 243 (587)
T ss_pred EeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC----------CCCCeEEE
Confidence 9999999999999999999999999999877 6889999999999999999999999873 23699998
Q ss_pred Eeeehh-----------------hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccc---------eeEEEeccccc
Q psy13351 648 EIYIMI-----------------ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLD---------NIQVKYHEHLT 701 (837)
Q Consensus 648 ~~~~~v-----------------~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld---------~i~V~~~g~~~ 701 (837)
+..... .+++..-.-..|......+.+=|..+.....++.++. ++.+-......
T Consensus 244 ~~~~~~~~~~~~~~~~~i~gi~~~~~~a~itl~~~~~~~g~~a~if~~l~~~~I~v~~i~qs~~~~~~~~isf~i~~~d~ 323 (587)
T PRK07431 244 SPPPRPRSLGGLELGKPVDGVELDEDQAKVALLRVPDRPGIAAQLFEELAAQGVNVDLIIQSIHEGNSNDIAFTVAENEL 323 (587)
T ss_pred eCCcccccccchhcccccceEEEecCceEEEEecCCCcccHHHHHHHHHHHcCCcEEEEEeccCCCCCccEEEEEeHHHH
Confidence 652110 0110000001222222333333444444566666662 33333322211
Q ss_pred c-----cc----ee--eeeeccCC-ceEEEecC----CcccHHHHHHHHHhcCCCccce-ecCCeeEEeCCCCCHHHHHH
Q psy13351 702 K-----LL----KI--ANITLFNS-HTISIQPF----EKEMSSIIKKAINEANLGLNPT-IQGNIIYVSIPPLTKERREE 764 (837)
Q Consensus 702 ~-----L~----~l--A~v~~~~~-~~l~i~~~----d~~~~~~I~kaI~~s~l~~~p~-~~~~~i~v~iP~~T~E~R~~ 764 (837)
+ |+ ++ .+|++.+. ..+.|.-. .+.....+..|+.+.+.++--. ..+..|.+.+|. +..++
T Consensus 324 ~~~~~~l~~l~~~~~~~~i~~~~~~a~IsvvG~gm~~~~gi~~ki~~aL~~~~I~i~~i~sSe~~Is~vv~~---~d~~~ 400 (587)
T PRK07431 324 KKAEAVAEAIAPALGGAEVLVETNVAKLSISGAGMMGRPGIAAKMFDTLAEAGINIRMISTSEVKVSCVIDA---EDGDK 400 (587)
T ss_pred HHHHHHHHHHHHHcCCCcEEEeCCeEEEEEECCCcccCccHHHHHHHHHHHCCCcEEEEEcCCCEEEEEEcH---HHHHH
Confidence 1 11 11 23444332 22222221 3677888889998776665433 345677777764 44556
Q ss_pred HHHHHHHHH
Q psy13351 765 IVKLIKNIT 773 (837)
Q Consensus 765 l~k~~k~~~ 773 (837)
.++.+++.+
T Consensus 401 av~~Lh~~f 409 (587)
T PRK07431 401 ALRAVCEAF 409 (587)
T ss_pred HHHHHHHHh
Confidence 666666555
No 63
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.90 E-value=2.4e-23 Score=226.39 Aligned_cols=226 Identities=22% Similarity=0.216 Sum_probs=158.1
Q ss_pred HHHHHHHhhhhhhhccC-CCccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccccc---CCCcchHHHH
Q psy13351 415 SLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ---NIDRSTADYM 486 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g-~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~---~~~~~~~~~~ 486 (837)
+++|+|+ +|+++..+ ++..++.+.+.+++++|+.+.+.|+++||||||| +..++...... ..+....+..
T Consensus 3 ~~iVIkl--GG~~L~~~~~~~~~~~~~i~~la~~Ia~l~~~G~~vvlV~Gg~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 80 (314)
T PRK12353 3 KKIVVAL--GGNALGSTPEEATAQLEAVKKTAKSLVDLIEEGHEVVITHGNGPQVGNILLAQEAAASEKNKVPAMPLDVC 80 (314)
T ss_pred cEEEEEE--CHHHhCCCCCCCcccHHHHHHHHHHHHHHHHCCCEEEEEeCCchHhCHHHhcCccccccCCCCCCchhHHH
Confidence 4578884 44444432 2345899999999999999999999999999995 44333222210 1112223333
Q ss_pred HHHHHHHHHH----HHHHHHHHcCCce--------eEeehhchh--h-------h------------------------h
Q psy13351 487 GMLATIINSL----ALFDILNKSGIIS--------HVMSAISIE--K-------F------------------------L 521 (837)
Q Consensus 487 ~~~~~~~~~~----ll~~~L~~~gi~a--------~~l~~~~~~--~-------~------------------------~ 521 (837)
.+...++.+. .+...|..+|+.. +.+++.+.. . + .
T Consensus 81 ~a~~qg~l~~~l~~~~~~~l~~~~~~~~~~~~v~q~ll~~~d~~f~~~~~p~g~~~~~~~~~~~~~~~g~~~~~~~~~~~ 160 (314)
T PRK12353 81 GAMSQGYIGYHLQNALRNELLKRGIDKPVATVVTQVVVDANDPAFKNPTKPIGPFYTEEEAEKLAKEKGYTFKEDAGRGY 160 (314)
T ss_pred HHHHhHHHHHHHHHHHHHHHHhcCCCcccceEEEEEEEcCCcccccCCCccccccccHHHHHHhhhhcCceeeecCCcee
Confidence 3334443333 3344477766522 111222100 0 0 0
Q ss_pred ----------hccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeeccCccc
Q psy13351 522 ----------ESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIY 578 (837)
Q Consensus 522 ----------~~~~~~~i~~ll~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~L~Ad~liilTDVdGVy 578 (837)
..++.+.+..+|+.|.|||++|+.|.|. +++|++|+++|.+|+||+|+++|||||||
T Consensus 161 r~~v~sp~p~~~v~~~~i~~lL~~g~IpV~~g~gg~Pi~~~~~~~~~~~~~~d~D~lAa~lA~~l~Ad~Li~lTdvdGVy 240 (314)
T PRK12353 161 RRVVPSPKPVDIVEIEAIKTLVDAGQVVIAAGGGGIPVIREGGGLKGVEAVIDKDFASAKLAELVDADLLIILTAVDKVY 240 (314)
T ss_pred EeccCCCCccccccHHHHHHHHHCCCEEEEcCCCCCCEEEeCCceeeeeEecCHHHHHHHHHHHhCCCEEEEEeCCcccc
Confidence 0134688999999999999998765553 34699999999999999999999999999
Q ss_pred cCCCCCCCCceeccccCHHHHHH--------hccccchHHHHHHHH--hCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 579 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 579 ~~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~--~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
++|| .|++++|++++++++.+ .|+|.+|+.|+..+. +.|++++|++ ++++.++++|+ .||+|.|
T Consensus 241 ~~~~--~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~~l~g~-~GT~i~~ 314 (314)
T PRK12353 241 INFG--KPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKEALEGK-AGTVIVK 314 (314)
T ss_pred CCCC--CCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHHHhCCC-CCeEecC
Confidence 9766 38999999999877654 478999999886655 7799999996 67889999998 8999964
No 64
>PRK08210 aspartate kinase I; Reviewed
Probab=99.90 E-value=1.8e-23 Score=237.21 Aligned_cols=202 Identities=24% Similarity=0.376 Sum_probs=158.2
Q ss_pred ccchhhhhhhhHHhhhcCceEEEEeCc-ch----hh----hccccc-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13351 438 SSIIKNIISEISEIVSCGIELAIVIGG-GN----IC----RGISNK-IQNIDRSTADYMGMLATIINSLALFDILNKSGI 507 (837)
Q Consensus 438 ~~~i~~la~~I~~l~~~G~~vVIVhGG-G~----~~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 507 (837)
++.+.+++++|+.+.+.|++++||||| |. .. .+.... ....++..++.+..++....+.+++.+|..+|+
T Consensus 16 ~~~~~~~~~~i~~~~~~g~~~vvV~sa~g~~G~~~~t~~l~~~~~~~~~~~~~~~~~~l~~~Ge~~s~~~~~~~l~~~Gi 95 (403)
T PRK08210 16 EERRKMAVNKIKKALKEGYKVVVVVSAMGRKGDPYATDTLLSLVGEEFSEISKREQDLLMSCGEIISSVVFSNMLNENGI 95 (403)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEEeCCCCCCCCCccHHHHHHHHHhccCCChHHHHHHHhHhHHHHHHHHHHHHHhCCC
Confidence 355889999999999999999988865 21 11 111110 112234445554444444467789999999999
Q ss_pred ceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C---C---cchHHHHHHHHHcCCcEEE
Q psy13351 508 ISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F---F---TTDTTAALRAAEIKAEIIL 569 (837)
Q Consensus 508 ~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~---~---s~D~lAa~lA~~L~Ad~li 569 (837)
+++++++.+.... +...+.+.+..+++.|.|||++|+.|.. . + ++|++|+.+|.+|+||+++
T Consensus 96 ~a~~l~~~~~~~~t~~~~~~~~v~~~~~~~l~~~l~~~~vpVi~G~~~~~~~g~~~~l~rg~sD~~A~~lA~~l~A~~l~ 175 (403)
T PRK08210 96 KAVALTGGQAGIITDDNFTNAKIIEVNPDRILEALEEGDVVVVAGFQGVTENGDITTLGRGGSDTTAAALGVALKAEYVD 175 (403)
T ss_pred CeEEechHHccEEccCCCCceeeehhhHHHHHHHHhcCCEEEeeCeeecCCCCCEEEeCCCchHHHHHHHHHHcCCCEEE
Confidence 9999998765321 2334678899999999999999975422 1 2 4899999999999999999
Q ss_pred EeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEE
Q psy13351 570 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646 (837)
Q Consensus 570 ilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I 646 (837)
+||||||||++||+.+|++++|++++++|+.+ .|.+++|+.|+++|.++++|++|.|++++ ..||+|
T Consensus 176 i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~----------~~gT~I 245 (403)
T PRK08210 176 IYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSD----------SPGTLI 245 (403)
T ss_pred EEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCC----------cCCcEE
Confidence 99999999999999999999999999998877 79999999999999999999999999864 249999
Q ss_pred EEe
Q psy13351 647 YEI 649 (837)
Q Consensus 647 ~~~ 649 (837)
.++
T Consensus 246 ~~~ 248 (403)
T PRK08210 246 TSL 248 (403)
T ss_pred Eec
Confidence 764
No 65
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.90 E-value=5e-23 Score=221.96 Aligned_cols=207 Identities=17% Similarity=0.155 Sum_probs=166.7
Q ss_pred ccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---c----cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13351 438 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---I----QN---IDRSTADYMGMLATIINSLALFDILNKSGI 507 (837)
Q Consensus 438 ~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~----~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 507 (837)
+...+.++++|+.|...|.++|||||||+........ . .+ .++..++...++.++..+..+.+.|..+|+
T Consensus 38 ~~l~~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~rvT~~~~l~~~~~~l~g~ln~~lv~~L~~~Gv 117 (284)
T CHL00202 38 LILKADIIKDILFLSCIGLKIVVVHGGGPEINFWLKQLNISPKFWNGIRVTDKVTMEIVEMVLAGKVNKDLVGSINANGG 117 (284)
T ss_pred cchHHHHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHCCCCCEeECCcccCCHHHHHHHHHHHhhHHHHHHHHHHHhCCC
Confidence 3456689999999999999999999999554332211 1 12 255667788888888888889999999999
Q ss_pred ceeEeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcE
Q psy13351 508 ISHVMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEI 567 (837)
Q Consensus 508 ~a~~l~~~~~~~~---------------~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~L~Ad~ 567 (837)
+++++++.+.+.+ +..++.+.+..+++.|.|||++|. .|.. ++++|++|+.+|..|+||+
T Consensus 118 ~av~l~~~d~~~i~a~~~~~~d~~~~G~i~~v~~~~i~~ll~~g~iPVi~~~~~~~~g~~~ni~~D~~A~~lA~~l~Ad~ 197 (284)
T CHL00202 118 KAVGLCGKDANLIVARASDKKDLGLVGEIQQVDPQLIDMLLEKNYIPVIASVAADHDGQTYNINADVVAGEIAAKLNAEK 197 (284)
T ss_pred CeeeeeeccCCEEEEEeCCCcccccceeEEecCHHHHHHHHHCCCEEEECCCccCCCCcEEecCHHHHHHHHHHHhCCCE
Confidence 9999999875311 345678999999999999999983 1222 4679999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCCC-EEEEEccCcch-HHHHHc
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGA-LKRVIE 638 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi~-v~I~ng~~~~~-i~~al~ 638 (837)
|+|+|||||||+++. +| .++|++++++|+.+ .|+|..|+.|+..+.++|++ ++|++|..|+. +.+++.
T Consensus 198 li~lTdv~Gv~~~~~--d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el~~ 274 (284)
T CHL00202 198 LILLTDTPGILADIN--DP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEILT 274 (284)
T ss_pred EEEEeCChhhcCCCC--CC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHhc
Confidence 999999999998532 12 37899999877655 58999999999999999986 78999999987 578999
Q ss_pred CCccceEEE
Q psy13351 639 GKNEGTLVY 647 (837)
Q Consensus 639 Ge~~GT~I~ 647 (837)
++..||+|.
T Consensus 275 ~~g~GT~i~ 283 (284)
T CHL00202 275 EKGIGSMLV 283 (284)
T ss_pred CCCCceEEe
Confidence 999999985
No 66
>PLN02512 acetylglutamate kinase
Probab=99.90 E-value=8.6e-23 Score=222.35 Aligned_cols=207 Identities=17% Similarity=0.181 Sum_probs=165.7
Q ss_pred cchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---cc----cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy13351 439 SIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KI----QN---IDRSTADYMGMLATIINSLALFDILNKSGII 508 (837)
Q Consensus 439 ~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~----~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~ 508 (837)
+....++++|+.+...|.++|||||||.....+.. .. .+ .++..++.+.++..+..+..+.+.|.++|++
T Consensus 63 ~~~~~~~~di~~l~~~g~~iVlVHGgG~~i~~~~~~~gi~~~~~~G~rvT~~~~lei~~~~l~g~ln~~lv~~L~~~Gv~ 142 (309)
T PLN02512 63 ELKAGVIRDLVLLSCVGLRPVLVHGGGPEINSWLKKVGIEPQFKNGLRVTDAETMEVVEMVLVGKVNKSLVSLINKAGGT 142 (309)
T ss_pred hHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCCcCCCCCcCCCHHHHHHHHHHHhhHHHHHHHHHHHHcCCC
Confidence 35567888888888889999999999965443222 11 11 2455566777777777888899999999999
Q ss_pred eeEeehhchh----------------hhhhccchHHHHHHHhCCCEEEEeCCC----CC-CCCcchHHHHHHHHHcCCcE
Q psy13351 509 SHVMSAISIE----------------KFLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTTAALRAAEIKAEI 567 (837)
Q Consensus 509 a~~l~~~~~~----------------~~~~~~~~~~i~~ll~~g~VPVv~G~~----G~-~~~s~D~lAa~lA~~L~Ad~ 567 (837)
++++++.+.+ ..+..++.+.+..+++.|.|||++|.. |. .++++|++|+++|..|+||+
T Consensus 143 av~l~g~d~~~i~a~~~~~~~~~~~~G~i~~v~~~~i~~lL~~g~IPVi~~~~~d~~g~~~~i~~D~~A~~lA~~L~Ad~ 222 (309)
T PLN02512 143 AVGLSGKDGRLLRARPSPNSADLGFVGEVTRVDPTVLRPLVDDGHIPVIATVAADEDGQAYNINADTAAGEIAAALGAEK 222 (309)
T ss_pred eEEeehhhCCEEEEEEcCcCccccccceeeecCHHHHHHHHhCCCEEEEeCceECCCCCEeccCHHHHHHHHHHHcCCCE
Confidence 9999998742 013456789999999999999999831 11 13579999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCCC-EEEEEccCcchHH-HHHc
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLP-IRVFSIIKSGALK-RVIE 638 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi~-v~I~ng~~~~~i~-~al~ 638 (837)
|+|+|||||||+++| +++++|++++++|+.+ .|+|..|+.++..+.+.|++ ++|++|..|+.+. +++.
T Consensus 223 li~lTdV~GV~~~~~---~~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l~~ 299 (309)
T PLN02512 223 LILLTDVAGVLEDKD---DPGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEILT 299 (309)
T ss_pred EEEEeCCcceeCCCC---CCcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHHhc
Confidence 999999999999864 3478999999887755 68999999999888889995 8999999998865 6788
Q ss_pred CCccceEEEE
Q psy13351 639 GKNEGTLVYE 648 (837)
Q Consensus 639 Ge~~GT~I~~ 648 (837)
++..||+|.+
T Consensus 300 ~~~~GT~I~~ 309 (309)
T PLN02512 300 DEGAGTMITG 309 (309)
T ss_pred CCCCeeEEeC
Confidence 8889999974
No 67
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.90 E-value=5.5e-23 Score=246.31 Aligned_cols=233 Identities=18% Similarity=0.215 Sum_probs=174.3
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCc----chhhhcccccccC----C--CcchH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGG----GNICRGISNKIQN----I--DRSTA 483 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGG----G~~~~~~~~~~~~----~--~~~~~ 483 (837)
.+++|+| .|++.+.+..+.++...+.+++++|+++++.|+++|||+|| |....++...... + +....
T Consensus 15 ~~~iViK---~G~ssl~~~~~~~~~~~i~~l~~~i~~l~~~g~~vvlVsSga~~~g~~~l~~~~~~~~~~~~~~~~~~~~ 91 (718)
T PLN02418 15 VKRVVIK---VGTAVVTRDDGRLALGRLGALCEQIKELNSDGYEVILVSSGAVGVGRQRLRYRRLVNSSFADLQKPQMEL 91 (718)
T ss_pred CCEEEEE---eCCCeecCCCCCccHHHHHHHHHHHHHHHHCCCEEEEEecchHHHHHHHHhhhhhhhcccccCCCCcchH
Confidence 4578899 56666766667899999999999999999999999999998 4444433322111 1 22233
Q ss_pred HHHHHHHHHHHHH---HHHHHHHHcCCceeE--eehhchhhh-hhccchHHHHHHHhCCCEEEEeCCCCCC---------
Q psy13351 484 DYMGMLATIINSL---ALFDILNKSGIISHV--MSAISIEKF-LESYIPLNAIKYLEEGKVVIFAGGIGNP--------- 548 (837)
Q Consensus 484 ~~~~~~~~~~~~~---ll~~~L~~~gi~a~~--l~~~~~~~~-~~~~~~~~i~~ll~~g~VPVv~G~~G~~--------- 548 (837)
+. +++++.++.. ++..+|..+|+++.. ++..++... ........+..+|+.|.|||+++.....
T Consensus 92 ~~-qa~aa~Gq~~l~~~~~~~f~~~g~~~~qillT~~~~~~~~~~~~~~~~l~~ll~~g~iPVv~~nd~v~~~~~~~~~~ 170 (718)
T PLN02418 92 DG-KACAAVGQSELMALYDTLFSQLDVTASQLLVTDSDFRDPDFRKQLSETVESLLDLRVIPIFNENDAVSTRRAPYEDS 170 (718)
T ss_pred HH-HHHHHhhHHHHHHHHHHHHHHcCCeEEEEEecHhHhcchhHhHhHHHHHHHHHHCCCEEEEcCCCCccccccccccc
Confidence 43 4444444444 445559999997743 222333211 1122357888999999999998732111
Q ss_pred --CC-cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHH----H-------hccccchHHHHHH
Q psy13351 549 --FF-TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI----S-------KKLEIMDSTAFSF 614 (837)
Q Consensus 549 --~~-s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~----~-------~G~~v~~~~Aa~~ 614 (837)
.+ .+|++|+++|..++||.|+|+|||||||++||+ +|++++|++++..+.. . .|+|.+|+.|+..
T Consensus 171 ~~~~~d~D~~A~~lA~~l~Ad~li~~TdVdGvy~~~p~-~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~ 249 (718)
T PLN02418 171 SGIFWDNDSLAALLALELKADLLILLSDVEGLYTGPPS-DPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVN 249 (718)
T ss_pred cCeecCcHHHHHHHHHHcCCCEEEEeecCCeeecCCCC-CCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHH
Confidence 22 499999999999999999999999999999997 5899999998653321 1 6899999999999
Q ss_pred HHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeee
Q psy13351 615 CRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI 651 (837)
Q Consensus 615 a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~ 651 (837)
|.++|++++|+||..|+.+.+++.|+.+||+|.+..+
T Consensus 250 a~~~Gi~v~I~~g~~~~~l~~~l~g~~~GT~i~~~~~ 286 (718)
T PLN02418 250 AASAGIPVVITSGYALDNIRKVLRGERVGTLFHQDAH 286 (718)
T ss_pred HHHCCCcEEEeCCCCcchHHHHhcCCCCceEeccccc
Confidence 9999999999999999999999999999999988633
No 68
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.90 E-value=4e-23 Score=220.90 Aligned_cols=225 Identities=21% Similarity=0.238 Sum_probs=170.3
Q ss_pred HHHHHHhhhhhhhccCCCccccc---cchhhhhhhhHHhhhcCceEEEEeCcch----hhhccccccc-CCCcchHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINS---SIIKNIISEISEIVSCGIELAIVIGGGN----ICRGISNKIQ-NIDRSTADYMG 487 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~---~~i~~la~~I~~l~~~G~~vVIVhGGG~----~~~~~~~~~~-~~~~~~~~~~~ 487 (837)
++|+.+ +|.++...+.....+ +.++..|++|+++.+.|++++|+||+|+ .+++...... +.++.+++.+.
T Consensus 4 ~ivval--gGnAl~~~~~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGpQVG~i~~~~~~~~~~~~~~~pld~~~ 81 (313)
T PRK12454 4 RIVIAL--GGNALLQPGEKGTAENQMKNVRKTAKQIADLIEEGYEVVITHGNGPQVGNLLLQMDAAKDVGIPPFPLDVAG 81 (313)
T ss_pred eEEEEe--ChHHhCCCCCCCcchHHHHHHHHHHHHHHHHHHcCCEEEEEECCChHHHHHHHHHHHhcccCCCCCccchhh
Confidence 566776 777777544322222 4899999999999999999999999974 5555333332 36778899999
Q ss_pred HHHHHHHHHHHHHH----HHHcCCceeEeehhch-----------------hhh--------------------------
Q psy13351 488 MLATIINSLALFDI----LNKSGIISHVMSAISI-----------------EKF-------------------------- 520 (837)
Q Consensus 488 ~~~~~~~~~ll~~~----L~~~gi~a~~l~~~~~-----------------~~~-------------------------- 520 (837)
+...|+.+++|+.+ |...|++....+..+. +.+
T Consensus 82 a~sqG~igy~l~~al~~~l~~~g~~~~v~t~~tq~~Vd~~Dpaf~~PtKpiG~~y~~~~a~~~~~~~g~~~~~d~g~g~R 161 (313)
T PRK12454 82 AMTQGWIGYMIQQALRNELAKRGIEKQVATIVTQVIVDKNDPAFQNPTKPVGPFYDEEEAKKLAKEKGWIVKEDAGRGWR 161 (313)
T ss_pred hhhhHHHHHHHHHHHHHHHHhcCCCCceEEEEEEEEECCCCccccCCCCCcCCCcCHHHHHHHHHHcCCEEEEcCCCceE
Confidence 99999988887766 6777765533332211 000
Q ss_pred --------hhccchHHHHHHHhCCCEEEEeCCCCCCCC-------------cchHHHHHHHHHcCCcEEEEeeccCcccc
Q psy13351 521 --------LESYIPLNAIKYLEEGKVVIFAGGIGNPFF-------------TTDTTAALRAAEIKAEIILKATKVDGIYN 579 (837)
Q Consensus 521 --------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~-------------s~D~lAa~lA~~L~Ad~liilTDVdGVy~ 579 (837)
...++.+.+..+|+.|.|||++|+.|.|.+ ++|++|+++|..|+||+|+|+|||||||+
T Consensus 162 rvV~SP~P~~ive~~aI~~LLe~G~IvI~~GgGGiPV~~~~g~~~gveaViD~D~aAa~LA~~L~AD~LIiLTdVdGVy~ 241 (313)
T PRK12454 162 RVVPSPDPLGIVEIEVIKALVENGFIVIASGGGGIPVIEEDGELKGVEAVIDKDLASELLAEELNADIFIILTDVEKVYL 241 (313)
T ss_pred EEeCCCCCccccCHHHHHHHHHCCCEEEEeCCCccceEcCCCcEEeeeeecCccHHHHHHHHHcCCCEEEEEeCCceeeC
Confidence 112346788999999999999998777653 25999999999999999999999999998
Q ss_pred CCCCCCCCceeccccCHHHHHH--------hccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 580 SDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 580 ~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
+++ .|++++|++++.+|+.+ .|+|.+|+.|+ +++.+.+.+++|++ ++++.++|.|+ .||+|.+
T Consensus 242 ~~~--~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~aL~G~-~GT~I~~ 313 (313)
T PRK12454 242 NYG--KPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVEALEGK-TGTRIIP 313 (313)
T ss_pred CCC--CCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHHHHCCC-CCeEeCC
Confidence 743 47899999999988755 47899999888 55566667888874 66799999998 8999964
No 69
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.89 E-value=1.1e-22 Score=219.46 Aligned_cols=218 Identities=20% Similarity=0.224 Sum_probs=166.8
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---c----cC---CCcchHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---I----QN---IDRSTADY 485 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~----~~---~~~~~~~~ 485 (837)
.+|+|. .|+. .++ ++..++++++++.+...|.++|||||||.....+... . .+ .++..++.
T Consensus 16 ~~ViKl--GGs~-i~~------~~~~~~~~~~i~~l~~~g~~~ViVhG~g~~~~~~l~~~g~~~~~~~g~r~t~~~~~~~ 86 (279)
T cd04250 16 TVVIKY--GGNA-MKD------EELKESFARDIVLLKYVGINPVVVHGGGPEINEMLKKLGIESEFVNGLRVTDEETMEI 86 (279)
T ss_pred EEEEEE--ChHH-hcC------ccHHHHHHHHHHHHHHCCCCEEEEcCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHH
Confidence 567784 3443 222 2356678888888888899999999998554332211 1 11 23334455
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------------hhccchHHHHHHHhCCCEEEEeCC
Q psy13351 486 MGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------------LESYIPLNAIKYLEEGKVVIFAGG 544 (837)
Q Consensus 486 ~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------------~~~~~~~~i~~ll~~g~VPVv~G~ 544 (837)
..++.++..+..+++.|.+.|++++++++.+.+.+ +..++.+.+..+++.|.|||++|.
T Consensus 87 ~~~~~~g~ln~~l~~~L~~~Gv~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~i~~ll~~g~IPVi~~~ 166 (279)
T cd04250 87 VEMVLVGKVNKEIVSLINRAGGKAVGLSGKDGNLIKAKKKDATVIEEIIDLGFVGEVTEVNPELLETLLEAGYIPVIAPV 166 (279)
T ss_pred HHHHHcCchHHHHHHHHHHcCCCcceeecCCCCEEEEEECcccccCCCcccCcccceEEEcHHHHHHHHHCCCeEEEcCC
Confidence 55554455666678999999999999999864211 344678899999999999999983
Q ss_pred CCC--C----CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHH
Q psy13351 545 IGN--P----FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTA 611 (837)
Q Consensus 545 ~G~--~----~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~A 611 (837)
+. . ++++|++|+++|..|+||.|+++|||||||++||+ ++++|++++++|+.+ .|+|..++.+
T Consensus 167 -~~~~~g~~~~~~~D~~A~~lA~~l~A~~li~ltdv~Gv~~~~p~---~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~ 242 (279)
T cd04250 167 -GVGEDGETYNINADTAAGAIAAALKAEKLILLTDVAGVLDDPND---PGSLISEISLKEAEELIADGIISGGMIPKVEA 242 (279)
T ss_pred -ccCCCCcEEEeCHHHHHHHHHHHhCCCEEEEEECCcccccCCCC---CccccccCCHHHHHHHHHcCCCCCchHHHHHH
Confidence 32 1 24699999999999999999999999999999984 478999999887755 6899999999
Q ss_pred HHHHHhCCCC-EEEEEccCcch-HHHHHcCCccceEE
Q psy13351 612 FSFCRDQKLP-IRVFSIIKSGA-LKRVIEGKNEGTLV 646 (837)
Q Consensus 612 a~~a~~~gi~-v~I~ng~~~~~-i~~al~Ge~~GT~I 646 (837)
|..+.++|++ ++|+||..|++ +.+++.++..||+|
T Consensus 243 a~~a~~~g~~~v~I~~g~~~~~ll~~~~~~~~~GT~i 279 (279)
T cd04250 243 CIEALEGGVKAAHIIDGRVPHSLLLEIFTDEGIGTMI 279 (279)
T ss_pred HHHHHHhCCCEEEEeCCCCCchHHHHHhcCCCCccCC
Confidence 9998888886 99999999986 57888888899985
No 70
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.89 E-value=2.2e-22 Score=217.70 Aligned_cols=155 Identities=19% Similarity=0.319 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhh-------------ccchHHHHHHHhCCCEEEEeCCCCCC--
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLE-------------SYIPLNAIKYLEEGKVVIFAGGIGNP-- 548 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~-------------~~~~~~i~~ll~~g~VPVv~G~~G~~-- 548 (837)
+.+...+..+++.+++.+|+.+|++++++++.++..... ......+..+++.|.|||++||.|..
T Consensus 119 d~i~s~GE~lSa~lla~~L~~~Gi~a~~l~~~~~~i~t~~~~~~a~~~~~~~~~i~~~l~~ll~~~~vpVv~Gfig~~~~ 198 (298)
T cd04244 119 DYIVSFGERLSAPIFSAALRSLGIKARALDGGEAGIITDDNFGNARPLPATYERVRKRLLPMLEDGKIPVVTGFIGATED 198 (298)
T ss_pred hHhccHhHHHHHHHHHHHHHhCCCCeEEEcHHHcceeecCcccccccchhHHHHHHHHHHHHhhcCCEEEEeCccccCCC
Confidence 444444455589999999999999999999987632100 00112345567889999999986632
Q ss_pred C----C---cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhC
Q psy13351 549 F----F---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ 618 (837)
Q Consensus 549 ~----~---s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~ 618 (837)
+ + .+|++|+.+|.+|+|+.+++||||||||++||+.+|+++++++++++|+.+ +|++++|+.|+.+|.++
T Consensus 199 g~~ttlgRggsD~~A~~~A~~l~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~ 278 (298)
T cd04244 199 GAITTLGRGGSDYSATIIGAALDADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEK 278 (298)
T ss_pred CCEEEecCCChHHHHHHHHHHcCCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHc
Confidence 1 1 389999999999999999999999999999999999999999999999987 69999999999999999
Q ss_pred CCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 619 KLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 619 gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||++|.|+++|+ ..||+|+
T Consensus 279 ~Ipi~i~n~~~p~---------~~GT~I~ 298 (298)
T cd04244 279 GIPVRVKNTFNPE---------APGTLIT 298 (298)
T ss_pred CCcEEEeeCCCCC---------CCCCEeC
Confidence 9999999999984 5799984
No 71
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.89 E-value=5.3e-23 Score=222.36 Aligned_cols=219 Identities=20% Similarity=0.193 Sum_probs=168.5
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---c----cC---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---I----QN---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~----~~---~~~~~~~ 484 (837)
+.+|+|. |++.++.+ +.+.+++++|+.+.+.|.++|||||||......... . .+ .++..++
T Consensus 24 ~~iViK~---GGs~l~~~------~~~~~l~~~i~~l~~~g~~vVlVhGgg~~~~~~~~~~g~~~~~~~g~~~t~~~~l~ 94 (283)
T PRK00942 24 KTIVIKY---GGNAMTDE------ELKEAFARDIVLLKQVGINPVVVHGGGPQIDELLKKLGIESEFVNGLRVTDAETME 94 (283)
T ss_pred CeEEEEE---ChHHhcCc------chHHHHHHHHHHHHHCCCCEEEEeCChHHHHHHHHHCCCCcEeeCCEecCCHHHHH
Confidence 3567884 44433332 457789999999989999999999998544332221 1 01 1334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh----------------hhccchHHHHHHHhCCCEEEEeCCCCCC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF----------------LESYIPLNAIKYLEEGKVVIFAGGIGNP 548 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~----------------~~~~~~~~i~~ll~~g~VPVv~G~~G~~ 548 (837)
...++.++..+..+.+.|..+|++++++++.+.+.+ +..++.+.+..+++.|.|||+++. |.+
T Consensus 95 ~~~~a~~G~l~~~i~~~L~~~Gv~a~~l~~~~~~~~ta~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~vpVv~~~-~~~ 173 (283)
T PRK00942 95 VVEMVLAGKVNKELVSLINKHGGKAVGLSGKDGGLITAKKLEEDEDLGFVGEVTPVNPALLEALLEAGYIPVISPI-GVG 173 (283)
T ss_pred HHHHHHcCchHHHHHHHHHhCCCCccceeeccCCEEEEEECCCCCCCccccceEEECHHHHHHHHHCCCEEEEcCc-EEC
Confidence 555555455566677899999999999998765221 345678999999999999999972 221
Q ss_pred ------CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHH
Q psy13351 549 ------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC 615 (837)
Q Consensus 549 ------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a 615 (837)
++++|++|+.+|..|+||+|+|+|||||||++ ++++|++++++|+.+ .|+|..++.++..+
T Consensus 174 ~~g~~~~l~~D~~A~~lA~~l~A~~li~~tdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~ 247 (283)
T PRK00942 174 EDGETYNINADTAAGAIAAALGAEKLILLTDVPGVLDD------KGQLISELTASEAEELIEDGVITGGMIPKVEAALDA 247 (283)
T ss_pred CCCcEEEECHHHHHHHHHHHcCCCEEEEEECCcccccC------CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHH
Confidence 35699999999999999999999999999986 478999999887755 58899999999888
Q ss_pred HhCCC-CEEEEEccCcch-HHHHHcCCccceEEEEe
Q psy13351 616 RDQKL-PIRVFSIIKSGA-LKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 616 ~~~gi-~v~I~ng~~~~~-i~~al~Ge~~GT~I~~~ 649 (837)
.++|+ +++|++|..|++ +.+++.|+.+||+|.++
T Consensus 248 ~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 283 (283)
T PRK00942 248 ARGGVRSVHIIDGRVPHALLLELFTDEGIGTMIVPD 283 (283)
T ss_pred HHhCCCEEEEeCCCCCchHHHHHhcCCCcceEEecC
Confidence 88887 599999999998 88999999999999863
No 72
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.89 E-value=4.8e-22 Score=214.17 Aligned_cols=203 Identities=19% Similarity=0.229 Sum_probs=154.2
Q ss_pred ccccchhhhhhhhHHhhhcCceEEEEeCc--c--hhhhccccc-------------------------------------
Q psy13351 436 INSSIIKNIISEISEIVSCGIELAIVIGG--G--NICRGISNK------------------------------------- 474 (837)
Q Consensus 436 i~~~~i~~la~~I~~l~~~G~~vVIVhGG--G--~~~~~~~~~------------------------------------- 474 (837)
-+.+.++++++.|..-.+.|.++++|+|+ | +........
T Consensus 12 ~~~~~~~~v~~ii~~~~~~~~~~vVVVSA~~gvTd~L~~~~~~a~~~~~~~~l~~i~~~~~~~~~~L~~~~~~~i~~~~~ 91 (295)
T cd04259 12 SSRARWDTIAKLAQKHLNTGGQPLIVCSALSGISNKLEALIDQALLDEHHSLFNAIQSRHLNLAEQLEVDADALLANDLA 91 (295)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCEEEEEeCCCCCchHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Confidence 45667888888887655567789999997 5 111100000
Q ss_pred -----------ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh----------------hccchH
Q psy13351 475 -----------IQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL----------------ESYIPL 527 (837)
Q Consensus 475 -----------~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~----------------~~~~~~ 527 (837)
....++...+.+...+..+++.+++.+|+..|+++..+.+.++.... ......
T Consensus 92 ~l~~~l~~~~~~~~~~~~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~a~v~~~~~~~ 171 (295)
T cd04259 92 QLQRWLTGISLLKQASPRTRAEVLALGELMSTRLGAAYLEAQGLKVKWLDARELLTATPTLGGETMNYLSARCESEYADA 171 (295)
T ss_pred HHHHHHHHhhhhccCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEcHHHheeecccccccccccccceehhhhhHH
Confidence 00123333444444445558999999999999999999987752111 111234
Q ss_pred HHHHHHhC-CCEEEEeCCCCCC--C-C------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHH
Q psy13351 528 NAIKYLEE-GKVVIFAGGIGNP--F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD 597 (837)
Q Consensus 528 ~i~~ll~~-g~VPVv~G~~G~~--~-~------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~ 597 (837)
.+...+.. +.|||++||.|.. + + .+|++|+.+|.+|+||.+++||||||||++||+.+|+++++++++++
T Consensus 172 ~l~~~l~~~~~v~Vv~GFig~~~~G~~ttLGrggsD~tA~~lA~~l~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ 251 (295)
T cd04259 172 LLQKRLADGAQLIITQGFIARNAHGETVLLGRGGSDTSAAYFAAKLQAARCEIWTDVPGLFTANPHEVPHARLLKRLDYD 251 (295)
T ss_pred HHHHHHhcCCceeEeCCceeeCCCCCEEEECCCChHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEeceeCHH
Confidence 56666665 6799999998733 2 1 29999999999999999999999999999999999999999999999
Q ss_pred HHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 598 EVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 598 e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|+.+ .|++++|+.|+.+|.++|+|++|.|+++|+ ..||+|+
T Consensus 252 ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~---------~~GT~I~ 295 (295)
T cd04259 252 EAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPE---------LSGTLIT 295 (295)
T ss_pred HHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCC---------CCCcEeC
Confidence 9877 699999999999999999999999999884 5799984
No 73
>PRK12686 carbamate kinase; Reviewed
Probab=99.88 E-value=3e-22 Score=214.71 Aligned_cols=224 Identities=17% Similarity=0.201 Sum_probs=166.2
Q ss_pred HHHHHHhhhhhhhccCC-CccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccccc-CCCcchHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGD-AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDRSTADYMGML 489 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~-~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~~~~~~~~~~~~~ 489 (837)
++|+++ +|.++...+ ......+.++..|++|+.|.+.|+++||+||+| +.++....... ..++.+++.+.+.
T Consensus 4 ~iVial--GGnAl~~~~~~~~~q~~~~~~~a~~ia~l~~~g~~~vi~HGnGPQVg~~~~~~~~~~~~~~~~~pl~~~~a~ 81 (312)
T PRK12686 4 KIVIAL--GGNAILQTEATAEAQQTAVREAAQHLVDLIEAGHDIVITHGNGPQVGNLLLQQAESNSNKVPAMPLDTCVAM 81 (312)
T ss_pred EEEEEc--ChHhhCCCCCChHHHHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHHhccccCCCCCChhhhhhh
Confidence 456665 666666433 234455688999999999999999999999998 33332222222 3578899999999
Q ss_pred HHHHHHHHHHHH----HHHcCCce--e------Eeehhch-------------------------hh-h-----------
Q psy13351 490 ATIINSLALFDI----LNKSGIIS--H------VMSAISI-------------------------EK-F----------- 520 (837)
Q Consensus 490 ~~~~~~~ll~~~----L~~~gi~a--~------~l~~~~~-------------------------~~-~----------- 520 (837)
..|..+++|+.. |...+... + .++..+. +. +
T Consensus 82 sqg~iGy~~~q~l~~~l~~r~~~~~v~~vvtqv~Vd~~d~af~~ptk~ig~~~~~~~a~~~~~~~g~~~~~d~~~G~rrv 161 (312)
T PRK12686 82 SQGMIGYWLQNALNNELTERGIDKPVITLVTQVEVDKDDPAFANPTKPIGPFYTEEEAKQQAEQPGSTFKEDAGRGYRRV 161 (312)
T ss_pred ccchhhHHHHHHHHHHHHhcCCCCCceEEEEEEEECCCChhhcCCCCCccCccCHHHHHHHHHHcCCcccccCCCCeEEe
Confidence 999999988877 44444322 1 1111110 00 0
Q ss_pred h------hccchHHHHHHHhCCCEEEEeCCCCCC-------------CCcchHHHHHHHHHcCCcEEEEeeccCccccCC
Q psy13351 521 L------ESYIPLNAIKYLEEGKVVIFAGGIGNP-------------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSD 581 (837)
Q Consensus 521 ~------~~~~~~~i~~ll~~g~VPVv~G~~G~~-------------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~d 581 (837)
+ .-++.+.+..++++|+|||.+|+.|.| .+++|++|++||..|+||+|+|+|||||||++
T Consensus 162 V~sP~P~~ive~~~I~~Ll~~G~IpI~~GgggIPVv~~~~~~~gv~avid~D~~Aa~LA~~L~Ad~LIiLTDVdGVy~~- 240 (312)
T PRK12686 162 VPSPKPQEIIEHDTIRTLVDGGNIVIACGGGGIPVIRDDNTLKGVEAVIDKDFASEKLAEQIDADLLIILTGVENVFIN- 240 (312)
T ss_pred eCCCCCccccCHHHHHHHHHCCCEEEEeCCCCCCeEecCCcEEeeecccCccHHHHHHHHHcCCCEEEEEeCchhhccC-
Confidence 1 115678899999999999998875533 13579999999999999999999999999995
Q ss_pred CCCCCCceeccccCHHHHHH--------hccccchHHHHHHHHhC--CCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 582 PNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQ--KLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 582 P~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~~~--gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|. .|++++|++++.+++.. .|+|.+|+.|+..+.+. |.+++|++ ++.+.++|.|+ .||+|.
T Consensus 241 ~~-~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~~aL~G~-~GT~I~ 311 (312)
T PRK12686 241 FN-KPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAKEALAGN-AGTHIT 311 (312)
T ss_pred CC-CCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHHHHhCCC-CCeEEe
Confidence 43 48899999999888755 48999999988887753 56788876 67788999998 899985
No 74
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.88 E-value=8.9e-22 Score=225.82 Aligned_cols=312 Identities=17% Similarity=0.193 Sum_probs=205.0
Q ss_pred cccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccccc-CCCc-----------------------------
Q psy13351 435 NINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ-NIDR----------------------------- 480 (837)
Q Consensus 435 ~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~-~~~~----------------------------- 480 (837)
.-+.+.+.++++.|......|+++|+||||+ +.+........ ....
T Consensus 12 v~~~~~~~~v~~~i~~~~~~~~~~vvVvSA~~~~Td~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~~~~~~ 91 (441)
T TIGR00657 12 VGNAERIRRVAKIVLKEKKKGNQVVVVVSAMAGVTDALVELAEQASPGPSKEFLEKIREKHIEILERLIPQAIAEELKRL 91 (441)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 3456788999999998777889999999983 11111110000 0000
Q ss_pred ---------chHHHHHHHHHH--HHHHHHHHHHHHcCCceeEeehhchhhh----------hhccchHHHHHHHhCCCEE
Q psy13351 481 ---------STADYMGMLATI--INSLALFDILNKSGIISHVMSAISIEKF----------LESYIPLNAIKYLEEGKVV 539 (837)
Q Consensus 481 ---------~~~~~~~~~~~~--~~~~ll~~~L~~~gi~a~~l~~~~~~~~----------~~~~~~~~i~~ll~~g~VP 539 (837)
.......+++.| .++.+++.+|+.+|++++++++.+.... ....+.+.+..+++.|.||
T Consensus 92 ~~~~~~~~~~~~~~d~ils~GE~~s~~l~~~~l~~~Gi~a~~l~~~~~~l~t~~~~~~~~~~~~~~~~~l~~~l~~~~vp 171 (441)
T TIGR00657 92 LDAELVLEEKPREMDRILSFGERLSAALLSAALEELGVKAVSLLGGEAGILTDSNFGRARVIIEILTERLEPLLEEGIIP 171 (441)
T ss_pred HHHHHhhhcCcchHhheecHHHHHHHHHHHHHHHhCCCCCEEEEcCcceEEecCCCCceeecHhhhHHHHHHHHhcCCEE
Confidence 011122333434 4788899999999999999999875321 3445678899999999999
Q ss_pred EEeCCCCCC---CC------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccc
Q psy13351 540 IFAGGIGNP---FF------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIM 607 (837)
Q Consensus 540 Vv~G~~G~~---~~------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~ 607 (837)
|++|+.|.+ .. .+|++|+.+|.+|+||.|++||||||||++||+.+|+++++++++++|+.+ .|++++
T Consensus 172 Vv~G~~g~~~~g~~~~lgrggsD~~A~~lA~~l~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~ 251 (441)
T TIGR00657 172 VVAGFQGATEKGETTTLGRGGSDYTAALLAAALKADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVL 251 (441)
T ss_pred EEeCcEeeCCCCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCccc
Confidence 999975522 11 279999999999999999999999999999999999999999999998877 789999
Q ss_pred hHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeee----hhh------hhh--hhhHHHhHHHHHHHHHHH
Q psy13351 608 DSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI----MII------SDI--KKNTKQKMLNTIKILKEN 675 (837)
Q Consensus 608 ~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~----~v~------~~i--~~~~~~~m~~~i~~~~~~ 675 (837)
|+.|+.+|.++++|++|.|+.+|+ ..||+|.+... ..+ +.+ +.-.-..|.. ...+.+=
T Consensus 252 ~~~a~~~~~~~~i~i~i~~~~~~~---------~~GT~I~~~~~~~~~~~i~~It~~~~v~~Isv~g~~~~~-~g~la~i 321 (441)
T TIGR00657 252 HPRTLEPAMRAKIPIVVKSTFNPE---------APGTLIVASTKEMEEPIVKGLSLDRNQARVTVSGLGMKG-PGFLARV 321 (441)
T ss_pred CHHHHHHHHHcCCeEEEecCCCCC---------CCceEEEeCCCccccCccceEEEeCCEEEEEEECCCCCC-ccHHHHH
Confidence 999999999999999999999873 46999986521 100 111 0000011221 1222222
Q ss_pred HHhhhcCCCCccccc------eeEEEecccccc-----------cceeeeeeccCC-ceEEEe---cC-CcccHHHHHHH
Q psy13351 676 LKKVRTGRANIGMLD------NIQVKYHEHLTK-----------LLKIANITLFNS-HTISIQ---PF-EKEMSSIIKKA 733 (837)
Q Consensus 676 l~~irtgr~~p~~ld------~i~V~~~g~~~~-----------L~~lA~v~~~~~-~~l~i~---~~-d~~~~~~I~ka 733 (837)
|..+..-..++.++. ++.+-....... ...+..|++.++ ..+.|. .+ .+.....|.++
T Consensus 322 f~~L~~~~I~I~~i~q~~se~sIs~~I~~~~~~~a~~~L~~~~~~~~~~~I~~~~~~a~VsvvG~~~~~~~g~~a~if~~ 401 (441)
T TIGR00657 322 FGALAEAGINVDLITQSSSETSISFTVDKEDADQAKTLLKSELNLSALSSVEVEKGLAKVSLVGAGMKSAPGVASKIFEA 401 (441)
T ss_pred HHHHHHcCCeEEEEEecCCCceEEEEEEHHHHHHHHHHHHHHHHhcCcceEEEcCCeEEEEEEcCCCCCCCchHHHHHHH
Confidence 333333334444442 233333222111 123344555443 223331 12 47888899999
Q ss_pred HHhcCCCccce-ecCCeeEEeCCC
Q psy13351 734 INEANLGLNPT-IQGNIIYVSIPP 756 (837)
Q Consensus 734 I~~s~l~~~p~-~~~~~i~v~iP~ 756 (837)
+.+.++++.-. ..+..|.+.++.
T Consensus 402 La~~~Inv~~i~~se~~Is~vV~~ 425 (441)
T TIGR00657 402 LAQNGINIEMISSSEINISFVVDE 425 (441)
T ss_pred HHHCCCCEEEEEecCCcEEEEEeH
Confidence 98887777555 355678888864
No 75
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.88 E-value=3.6e-22 Score=212.47 Aligned_cols=192 Identities=19% Similarity=0.231 Sum_probs=152.8
Q ss_pred hhhhhhhHHhhhcCceEEEEeCcchhhhccccc---cc-------C-----CCcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13351 442 KNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ-------N-----IDRSTADYMGMLATIINSLALFDILNKSG 506 (837)
Q Consensus 442 ~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~-------~-----~~~~~~~~~~~~~~~~~~~ll~~~L~~~g 506 (837)
++++++|+.+ |.++|||||||+........ .. + .++.+++.+.++. +..+..+.+.|.++|
T Consensus 14 ~~~~~~i~~l---g~~~VlVHGgg~~i~~~~~~~gi~~~~~~~~~G~~~Rvt~~~~l~~~~~a~-~~ln~~iv~~L~~~G 89 (257)
T cd04251 14 DKVIDDIANF---GERLIVVHGGGNYVNEYLKRLGVEPKFVTSPSGIRSRYTDKETLEVFVMVM-GLINKKIVARLHSLG 89 (257)
T ss_pred HHHHHHHHHc---CCCEEEECCCHHHHHHHHHHcCCCcEEEeCCCCCccccCCHHHHHHHHHHH-HHHHHHHHHHHHhCC
Confidence 5789999987 88999999999554332211 11 2 2555666667666 555666788999999
Q ss_pred CceeEeehhchhh--------------------------hhhccchHHHHHHHhCCCEEEEeCCC----CC-CCCcchHH
Q psy13351 507 IISHVMSAISIEK--------------------------FLESYIPLNAIKYLEEGKVVIFAGGI----GN-PFFTTDTT 555 (837)
Q Consensus 507 i~a~~l~~~~~~~--------------------------~~~~~~~~~i~~ll~~g~VPVv~G~~----G~-~~~s~D~l 555 (837)
++++++++.+.+. .+..++.+.+..+++.|+|||++++. |. .++++|++
T Consensus 90 i~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~G~v~~v~~~~i~~ll~~g~vpVi~~~~~~~~G~~~~i~~D~~ 169 (257)
T cd04251 90 VKAVGLTGLDGRLLEAKRKEIVRVNERGRKMIIRGGYTGKVEKVNSDLIEALLDAGYLPVVSPVAYSEEGEPLNVDGDRA 169 (257)
T ss_pred CCceecccccCCEEEEEEeecccccccCcccccCCcceEEEEEEcHHHHHHHHhCCCeEEEeCcEECCCCcEEecCHHHH
Confidence 9999999977521 13456789999999999999998742 11 24679999
Q ss_pred HHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hccccchHHHHHHHHhCCC-CEEEEEccC
Q psy13351 556 AALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFSFCRDQKL-PIRVFSIIK 629 (837)
Q Consensus 556 Aa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~ 629 (837)
|+.+|..|+||+|+|+|||||||++ ++++++++++|+.+ .|+|..|+.++..+.++|+ +++|++|..
T Consensus 170 A~~lA~~L~A~~li~~tdv~Gv~~~-------~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~ 242 (257)
T cd04251 170 AAAIAAALKAERLILLTDVEGLYLD-------GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARA 242 (257)
T ss_pred HHHHHHHcCCCEEEEEeCChhheeC-------CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCC
Confidence 9999999999999999999999963 67899999877755 5999999999999999988 578899999
Q ss_pred cchHHHHHcCCccceEE
Q psy13351 630 SGALKRVIEGKNEGTLV 646 (837)
Q Consensus 630 ~~~i~~al~Ge~~GT~I 646 (837)
|+++.++|.|+ ||+|
T Consensus 243 ~~~l~~~l~g~--gT~i 257 (257)
T cd04251 243 DSPISSALNGG--GTVI 257 (257)
T ss_pred ccHHHHHHcCC--CcCC
Confidence 99999999985 9975
No 76
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.87 E-value=5e-22 Score=211.83 Aligned_cols=201 Identities=19% Similarity=0.183 Sum_probs=157.9
Q ss_pred cchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccc-------cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCc
Q psy13351 439 SIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI-------QN---IDRSTADYMGMLATIINSLALFDILNKSGII 508 (837)
Q Consensus 439 ~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~-------~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~ 508 (837)
+.+.+++++|+.+...|.++|||||||.......... .+ .++..++...++.++..+..+.++|..+|++
T Consensus 14 ~~~~~~~~~i~~l~~~g~~~VlVhG~g~~~~~~~~~~~~~~~~~~~~r~t~~~~l~~~~~a~~g~ln~~i~~~L~~~Gv~ 93 (256)
T cd04238 14 ELKEAFADDIVLLKQVGINPVIVHGGGPEINELLKRLGIESEFVNGLRVTDKETMEIVEMVLAGKVNKELVSLLNRAGGK 93 (256)
T ss_pred cHHHHHHHHHHHHHHCCCCEEEECCCcHHHHHHHHHCCCCCEeECCeecCCHHHHHHHHHHHcCchHHHHHHHHHhCCCC
Confidence 3677899999988888999999999985543322211 01 1344455555554355666678999999999
Q ss_pred eeEeehhchhh-----------------hhhccchHHHHHHHhCCCEEEEeCCCCC--C----CCcchHHHHHHHHHcCC
Q psy13351 509 SHVMSAISIEK-----------------FLESYIPLNAIKYLEEGKVVIFAGGIGN--P----FFTTDTTAALRAAEIKA 565 (837)
Q Consensus 509 a~~l~~~~~~~-----------------~~~~~~~~~i~~ll~~g~VPVv~G~~G~--~----~~s~D~lAa~lA~~L~A 565 (837)
++++++.+.+. .+..++.+.+..+++.|.|||++|. |. . ++++|++|+++|..|+|
T Consensus 94 a~~l~~~~~~~~~~~~~~~~~~~~~~~g~i~~i~~~~l~~ll~~g~ipVv~~~-~~~~~g~~~~~~~D~~A~~lA~~l~a 172 (256)
T cd04238 94 AVGLSGKDGGLIKAEKKEEKDIDLGFVGEVTEVNPELLETLLEAGYIPVIAPI-AVDEDGETYNVNADTAAGAIAAALKA 172 (256)
T ss_pred CCCcccccCCEEEEEECCCCCCCcccccceEEECHHHHHHHHHCCCEEEECCc-EECCCCcEEEECHHHHHHHHHHHcCC
Confidence 99999987521 1345678999999999999999972 21 1 34599999999999999
Q ss_pred cEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCC-CEEEEEccCcchHHHHH
Q psy13351 566 EIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVI 637 (837)
Q Consensus 566 d~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al 637 (837)
|.|+|+|||||||++ +++++++++++|+.+ .|+|..++.++..+.+.|+ +++|++|..|++|.++|
T Consensus 173 ~~li~ltdv~Gv~~~------~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l 246 (256)
T cd04238 173 EKLILLTDVPGVLDD------PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLEL 246 (256)
T ss_pred CEEEEEeCCccccCC------CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHH
Confidence 999999999999987 268999999877654 5889999999988888776 69999999999999999
Q ss_pred cC-CccceEE
Q psy13351 638 EG-KNEGTLV 646 (837)
Q Consensus 638 ~G-e~~GT~I 646 (837)
.| +..||+|
T Consensus 247 ~~~~~~GT~i 256 (256)
T cd04238 247 FTDEGIGTMI 256 (256)
T ss_pred hcCCCCCCCC
Confidence 98 5689976
No 77
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.87 E-value=4.2e-22 Score=211.83 Aligned_cols=200 Identities=18% Similarity=0.179 Sum_probs=149.6
Q ss_pred cchhhhhhhhHHhhh-cCceEEEEeCcchhhhccc---cccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Q psy13351 439 SIIKNIISEISEIVS-CGIELAIVIGGGNICRGIS---NKIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGI 507 (837)
Q Consensus 439 ~~i~~la~~I~~l~~-~G~~vVIVhGGG~~~~~~~---~~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi 507 (837)
+.+++++++|+.+.. .|.++|||||||....... .... + .+...++...++..+..+..+.+.+.++|+
T Consensus 14 ~~~~~~~~~i~~~~~~~~~~iVlVhGgg~~~~~~~~~~g~~~~~~~g~rvt~~~~l~~~~~~~~~~~n~~lv~~l~~~Gv 93 (252)
T cd04249 14 AALEQLFSALSEYQQQHNRQLVIVHGGGCVVDELLKKLNFPSEKKNGLRVTPKEQIPYITGALAGTANKQLMAQAIKAGL 93 (252)
T ss_pred hhHHHHHHHHHHHHHhCCCCEEEECCCCHHHHHHHHHcCCCCEEECCEecCCHHHHHHHHHHHcCcccHHHHHHHHhCCC
Confidence 568889999998754 5789999999995532211 1111 1 234455555444444444555566668999
Q ss_pred ceeEeehhchhhh--------------hhccchHHHHHHHhCCCEEEEeCCCCC------CCCcchHHHHHHHHHcCCcE
Q psy13351 508 ISHVMSAISIEKF--------------LESYIPLNAIKYLEEGKVVIFAGGIGN------PFFTTDTTAALRAAEIKAEI 567 (837)
Q Consensus 508 ~a~~l~~~~~~~~--------------~~~~~~~~i~~ll~~g~VPVv~G~~G~------~~~s~D~lAa~lA~~L~Ad~ 567 (837)
+++++++.+.+.+ +..++.+.+..+++.|.|||++|. |. .++++|++|+++|..|+||
T Consensus 94 ~a~~l~~~~~~~~~~~~~~~~~~~~G~v~~i~~~~l~~ll~~g~ipVi~~~-g~~~~g~~~~~~~D~~A~~lA~~l~A~- 171 (252)
T cd04249 94 KPVGLSLADGGMTAVTQLDPELGAVGKATANDPSLLNDLLKAGFLPIISSI-GADDQGQLMNVNADQAATAIAQLLNAD- 171 (252)
T ss_pred CceeeeccCCCEEEEEEcCCCCCcccceEEEcHHHHHHHHHCCCEEEECCC-EECCCCCEeeecHHHHHHHHHHHcCCC-
Confidence 9999999865211 345678999999999999999972 21 2466999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHH-HhCCCCEEEEEccCcchHHHHHcC
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFC-RDQKLPIRVFSIIKSGALKRVIEG 639 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a-~~~gi~v~I~ng~~~~~i~~al~G 639 (837)
++++|||||||++|| ++|++++.+|+.+ .|+|..++.++..+ ...+++++|++|..|+.+.+++.|
T Consensus 172 ~i~ltdv~Gv~~~~~------~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l~g 245 (252)
T cd04249 172 LVLLSDVSGVLDADK------QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALLAG 245 (252)
T ss_pred EEEEeCCcccCCCCC------cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHHcC
Confidence 679999999998765 5788888777654 47788888766554 555689999999999999999999
Q ss_pred CccceEE
Q psy13351 640 KNEGTLV 646 (837)
Q Consensus 640 e~~GT~I 646 (837)
+.+||+|
T Consensus 246 ~~~GT~I 252 (252)
T cd04249 246 EPVGTKI 252 (252)
T ss_pred CCCCcCC
Confidence 9999986
No 78
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.87 E-value=1.8e-21 Score=209.86 Aligned_cols=155 Identities=21% Similarity=0.281 Sum_probs=128.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhC-CCEEEEeCCCCCC--CCc
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEE-GKVVIFAGGIGNP--FFT 551 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~-g~VPVv~G~~G~~--~~s 551 (837)
+.+...+..+++.+|+.+|...|+++..+++.++-.. ........+..++.. +.|||++||.|.. +.+
T Consensus 118 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~l~~~~~~~~~v~Vv~Gfig~~~~G~~ 197 (294)
T cd04257 118 AKVLSFGERLSARLLSALLNQQGLDAAWIDARELIVTDGGYLNAVVDIELSKERIKAWFSSNGKVIVVTGFIASNPQGET 197 (294)
T ss_pred hhheeHHHHHHHHHHHHHHHhCCCCeEEEchHHeeEecCCCCceEechHhhHHHHHHHHhcCCCEEEecCcccCCCCCCE
Confidence 3333344445899999999999999999998775110 111224566666665 8999999988732 222
Q ss_pred -------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 552 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 -------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+++|..|+||.+++||||||||++||+.+|+|++++.++++|+.+ .|.+++++.|+.+|.++|+|
T Consensus 198 ttlGRGGSD~~A~~lA~~l~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ip 277 (294)
T cd04257 198 TTLGRNGSDYSAAILAALLDADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIP 277 (294)
T ss_pred EECCCCchHHHHHHHHHHhCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCC
Confidence 79999999999999999999999999999999999999999999999887 79999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|.|+++|+ ..||+|.
T Consensus 278 i~i~~~~~p~---------~~GT~I~ 294 (294)
T cd04257 278 ILIKNTFNPE---------APGTLIS 294 (294)
T ss_pred EEEeeCCCCC---------CCCCEeC
Confidence 9999999884 5799984
No 79
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.87 E-value=3.2e-21 Score=207.79 Aligned_cols=155 Identities=25% Similarity=0.296 Sum_probs=128.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh-----hhcc----chHHHHHHHhC-CCEEEEeCCCCCC--CCc
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF-----LESY----IPLNAIKYLEE-GKVVIFAGGIGNP--FFT 551 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~-----~~~~----~~~~i~~ll~~-g~VPVv~G~~G~~--~~s 551 (837)
+.+...+..+++.+++.+|...|+++..+++.++-.. .... ....+..++.. +.|||++||.|.. +.+
T Consensus 117 d~ils~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~s~~~~~~~~~~~~~v~Vv~Gfig~~~~G~~ 196 (293)
T cd04243 117 AEVLSFGELLSSRLMSAYLQEQGLPAAWLDARELLLTDDGFLNAVVDLKLSKERLAQLLAEHGKVVVTQGFIASNEDGET 196 (293)
T ss_pred hHheeHHHHHHHHHHHHHHHhCCCCcEEEcHHHeEEecCCCCcchhhhHHHHHHHHHHHhcCCCEEEecCccccCCCCCE
Confidence 4444444445899999999999999999998765110 0011 13467777776 8999999988632 222
Q ss_pred -------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 552 -------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 -------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+++|..|+||.+++||||||||++||+.+|+|+++++++++|+.+ .|.+++|+.|+.+|.++|+|
T Consensus 197 ttLGRggsD~~A~~~a~~l~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~ 276 (293)
T cd04243 197 TTLGRGGSDYSAALLAALLDAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIP 276 (293)
T ss_pred EEeCCCCcHHHHHHHHHHcCCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCc
Confidence 69999999999999999999999999999999999999999999999887 79999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|.|+++|+ ..||+|+
T Consensus 277 i~i~~~~~p~---------~~GT~I~ 293 (293)
T cd04243 277 IFIKNTFNPE---------APGTLIS 293 (293)
T ss_pred EEEecCCCCC---------CCCCEeC
Confidence 9999999984 5799984
No 80
>PRK06291 aspartate kinase; Provisional
Probab=99.86 E-value=4e-21 Score=221.14 Aligned_cols=159 Identities=22% Similarity=0.296 Sum_probs=131.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh---------h----ccchHHHHHHHhCCCEEEEeCCCCCC
Q psy13351 482 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL---------E----SYIPLNAIKYLEEGKVVIFAGGIGNP 548 (837)
Q Consensus 482 ~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~---------~----~~~~~~i~~ll~~g~VPVv~G~~G~~ 548 (837)
..|.+...+..+++.+|+.+|+..|++++++++.+++.+. . ......+..+++.|.|||++||.|..
T Consensus 121 ~~d~i~s~GE~~Sa~l~~~~L~~~Gi~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~ll~~~~vpVv~Gfig~~ 200 (465)
T PRK06291 121 SRDYILSFGERLSAPILSGALRDLGIKSVALTGGEAGIITDSNFGNARPLPKTYERVKERLEPLLKEGVIPVVTGFIGET 200 (465)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhCCCCeEEEchHHCcEEecCCCCceeechhhHHHHHHHHHHHhhcCcEEEEeCcEEcC
Confidence 3444444445558999999999999999999998763210 0 11123566678899999999976532
Q ss_pred ---C---C---cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHH
Q psy13351 549 ---F---F---TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR 616 (837)
Q Consensus 549 ---~---~---s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~ 616 (837)
. + .+|++|+++|..|+||.+++||||||||++||+.+|+++++++++++|+.+ .|++++||.|+.+|.
T Consensus 201 ~~g~~~tlgrggsD~~A~~~A~~l~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~ 280 (465)
T PRK06291 201 EEGIITTLGRGGSDYSAAIIGAALDADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAM 280 (465)
T ss_pred CCCCEEEecCCChHHHHHHHHHhcCCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHH
Confidence 1 2 389999999999999999999999999999999999999999999999887 699999999999999
Q ss_pred hCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 617 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 617 ~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|+|++|.|+++|+ +.||+|.++
T Consensus 281 ~~~i~i~i~~~~~~~---------~~gt~i~~~ 304 (465)
T PRK06291 281 EKGIPVRVKNTFNPE---------FPGTLITSD 304 (465)
T ss_pred HcCCcEEEecCCCCC---------CCceEEEec
Confidence 999999999999884 579999864
No 81
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.86 E-value=1.7e-21 Score=199.72 Aligned_cols=180 Identities=21% Similarity=0.250 Sum_probs=142.8
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhccccc--ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchh
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGISNK--IQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIE 518 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~ 518 (837)
+..+.+.+..+. |++++||.|||++++.+... ..++++...|+++++++.+++++|+..+...+
T Consensus 12 ~~~~~~~l~~~~--~~~v~iV~GGG~~A~~~r~~~~~~g~~~~~ad~mgilat~~na~~l~~~~~~~~------------ 77 (203)
T cd04240 12 AVRLLRWLKTLS--GGGVVIVPGGGPFADVVRRYQERKGLSDAAAHWMAILAMEQYGYLLADLEPRLV------------ 77 (203)
T ss_pred HHHHHHHHHhcc--CCCEEEEcCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHhccCCccc------------
Confidence 444555555442 88999999999985544433 44789999999999999999998764332221
Q ss_pred hhhhccchHHHHHHHhCCCEEEEeCC--------CCC-CCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCce
Q psy13351 519 KFLESYIPLNAIKYLEEGKVVIFAGG--------IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAI 589 (837)
Q Consensus 519 ~~~~~~~~~~i~~ll~~g~VPVv~G~--------~G~-~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~ 589 (837)
..+...+..++..|.+||+.+. .+. .++|+|++|+++|..|+|++|+++|||||||++| ++
T Consensus 78 ----~~~~~~~~~~~~~g~ipV~~P~~~~~~~~~~~~~~~~ttD~lAa~lA~~l~A~~Li~ltdVdGVy~~d------a~ 147 (203)
T cd04240 78 ----ARTLAELTDVLERGKIAILLPYRLLLDTDPLPHSWEVTSDSIAAWLAKKLGAKRLVIVTDVDGIYEKD------GK 147 (203)
T ss_pred ----cCCHHHHHHHHHCCCcEEEeCchhhcccCCCCcccccCHHHHHHHHHHHcCCCEEEEEeCCccccCCC------Cc
Confidence 1234567788999999999873 111 2478999999999999999999999999999864 78
Q ss_pred eccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCC-ccceEE
Q psy13351 590 IYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLV 646 (837)
Q Consensus 590 ~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge-~~GT~I 646 (837)
++++++..++.. ...+|..+++.+.++|++++|+||..|+++.+++.|+ .+||+|
T Consensus 148 ~i~~i~~~e~~~--~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT~I 203 (203)
T cd04240 148 LVNEIAAAELLG--ETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGTRI 203 (203)
T ss_pred CccccCHHHhCC--CCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCCCC
Confidence 999999887653 4456777788899999999999999999999999998 789975
No 82
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.86 E-value=7.8e-22 Score=208.64 Aligned_cols=201 Identities=20% Similarity=0.285 Sum_probs=147.0
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCC-----------cchHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNID-----------RSTADY 485 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~-----------~~~~~~ 485 (837)
+|+|. |++.+.+.+ ++ +.+++++|+.+.+.|+++|||||||.....+.... +.. ......
T Consensus 3 ~ViK~---GGs~l~~~~----~~-~~~~~~~i~~l~~~g~~vvvV~g~g~~~~~~~~~~-~~~~~~~~~~r~~~~~~~~~ 73 (242)
T PF00696_consen 3 IVIKL---GGSSLTDKD----EE-LRELADDIALLSQLGIKVVVVHGGGSFTDELLEKY-GIEPKFVDGSRVTDIETGLI 73 (242)
T ss_dssp EEEEE----HHGHSSHS----HH-HHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHC-THTTSEETHHCHBHHHHHHH
T ss_pred EEEEE---CchhhCCch----HH-HHHHHHHHHHHHhCCCeEEEEECChhhcCchHHhc-cCCcccchhhhhhhhhhhHH
Confidence 45673 444443332 35 99999999999999999999999986555443331 111 111222
Q ss_pred HHHHHHHHHHH-----HHHHHHHHcCCceeEeehhchhhhh-----hccchHHHHHHHhCCCEEEEeCCCC-----C---
Q psy13351 486 MGMLATIINSL-----ALFDILNKSGIISHVMSAISIEKFL-----ESYIPLNAIKYLEEGKVVIFAGGIG-----N--- 547 (837)
Q Consensus 486 ~~~~~~~~~~~-----ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~~~~~i~~ll~~g~VPVv~G~~G-----~--- 547 (837)
....+....+. .+.+.+..++.+++.+.+.+.+... ..++.+.+..+++.|.|||++|+.+ .
T Consensus 74 ~~~~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~ipVv~g~~~~~~~g~~~~ 153 (242)
T PF00696_consen 74 ITMAAAAELNRDALLDEIVSAGERLGAHAVGLSLSDGGISAAKRDAREVDKEAIRELLEQGIIPVVSGFAGIDDDGEVTT 153 (242)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCTHHEEEHHHTGGTEEEEEEESSEEHHHHHHHHHHTTSEEEEESEEEEETTSTEEE
T ss_pred HHHHHhhccccchhHHHHHHhhhhhhHHHHhhhhhcccchhhhhhhhhhHHHHHHHHHHCCCEEEEeCCcccCCCCCccc
Confidence 22222222222 5666788899988888777753321 2356789999999999999999542 1
Q ss_pred -CCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH--------hccc-cchHHHHHHHHh
Q psy13351 548 -PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLE-IMDSTAFSFCRD 617 (837)
Q Consensus 548 -~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~--------~G~~-v~~~~Aa~~a~~ 617 (837)
...++|++|+++|.+|+|+.|+|+|||||||++||+.+|+++++++++++|+.+ .|+| +.++.|.+.+++
T Consensus 154 ~~~~~sD~~A~~lA~~l~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~ 233 (242)
T PF00696_consen 154 LGNVSSDYIAALLAAALGADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEE 233 (242)
T ss_dssp EEEETHHHHHHHHHHHTTCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhCchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHc
Confidence 245699999999999999999999999999999999999999999999998876 3444 555667788888
Q ss_pred CCCCEEEEE
Q psy13351 618 QKLPIRVFS 626 (837)
Q Consensus 618 ~gi~v~I~n 626 (837)
++++++|+|
T Consensus 234 ~~~~v~I~n 242 (242)
T PF00696_consen 234 GGIPVHIIN 242 (242)
T ss_dssp TTSEEEEEE
T ss_pred CCCcEEEeC
Confidence 899999986
No 83
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.86 E-value=5.9e-21 Score=204.66 Aligned_cols=159 Identities=18% Similarity=0.212 Sum_probs=136.6
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCCC-
Q psy13351 480 RSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNPF- 549 (837)
Q Consensus 480 ~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~- 549 (837)
+...+.+...+..+++.+|+.+|+..|+++..+++.+++.. +.....+.+.+.+..+.|||++||.|.+.
T Consensus 109 ~~~~d~i~s~GE~lSa~ll~~~L~~~Gi~a~~ld~~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~ 188 (288)
T cd04245 109 DYLLDALKARGEYLNAQLMAAYLNYQGIDARYVIPKDAGLVVTDEPGNAQILPESYQKIKKLRDSDEKLVIPGFYGYSKN 188 (288)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHCCCCeEEEcHHHCceeecCCccccccchhhHHHHHHHHhCCCEEEEeCccccCCC
Confidence 44556666666667899999999999999999999887322 11124567888888899999999988541
Q ss_pred --------CcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhC
Q psy13351 550 --------FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ 618 (837)
Q Consensus 550 --------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~ 618 (837)
-++|+.|+.+|.+|+||.+.+||||||||++||+.+|+|+.+++++|+|+.+ +|++++|+.|+.+|.++
T Consensus 189 G~~ttLgRggSD~tAal~A~~l~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~ 268 (288)
T cd04245 189 GDIKTFSRGGSDITGAILARGFQADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEA 268 (288)
T ss_pred CCEEEcCCCchHHHHHHHHHHcCCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHC
Confidence 2499999999999999999999999999999999999999999999999988 79999999999999999
Q ss_pred CCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 619 KLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 619 gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|++|.|.++|+ ..||+|.
T Consensus 269 ~Ipi~v~n~~~p~---------~~GT~I~ 288 (288)
T cd04245 269 GIPINIKNTNHPE---------APGTLIV 288 (288)
T ss_pred CCcEEEeeCCCCC---------CCCceeC
Confidence 9999999999885 5799984
No 84
>PRK08373 aspartate kinase; Validated
Probab=99.86 E-value=1.2e-20 Score=206.18 Aligned_cols=157 Identities=24% Similarity=0.288 Sum_probs=131.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh------------hhccchHHHHHHHhCCCEEEEeCCCCCC-
Q psy13351 482 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNP- 548 (837)
Q Consensus 482 ~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~------------~~~~~~~~i~~ll~~g~VPVv~G~~G~~- 548 (837)
..|.+...+...++.+++.+|...|+++..+++.++-.. ....+.+.+..+++.|.|||++|+.|+.
T Consensus 101 ~~D~ils~GE~lSa~lla~~L~~~Gi~a~~l~~~~~i~t~~~~~~a~i~~~~s~~~~~~l~~~l~~g~VpVv~Gf~g~~~ 180 (341)
T PRK08373 101 LRDYILSFGERLSAVLFAEALENEGIKGKVVDPWEILEAKGSFGNAFIDIKKSKRNVKILYELLERGRVPVVPGFIGNLN 180 (341)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCceEEEeHHHheeecCCccceeechhhhhhhHHHHHHHHhCCcEEEEeCCccCCC
Confidence 345555555556899999999999999999999765110 0113446788889999999999988742
Q ss_pred C-C------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhC
Q psy13351 549 F-F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ 618 (837)
Q Consensus 549 ~-~------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~ 618 (837)
+ . ++|++|+.+|..|+|+.+++||||||||++||+.+|+|+++++++++|+.+ .|++++++.|.++|.+
T Consensus 181 G~~ttLGRGGSD~tA~~lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~- 259 (341)
T PRK08373 181 GFRATLGRGGSDYSAVALGVLLNAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG- 259 (341)
T ss_pred CeEEEcCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-
Confidence 2 1 279999999999999999999999999999999999999999999999987 7999999999999999
Q ss_pred CCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 619 KLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 619 gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|++|.|.++| ..||+|.++
T Consensus 260 ~Ipi~v~~t~~~----------~~GT~I~~~ 280 (341)
T PRK08373 260 KIPIIFGRTRDW----------RMGTLVSNE 280 (341)
T ss_pred CCcEEEecCCCC----------CCCcEEecC
Confidence 999999998775 359999764
No 85
>PLN02551 aspartokinase
Probab=99.86 E-value=5.5e-20 Score=212.14 Aligned_cols=227 Identities=18% Similarity=0.243 Sum_probs=164.3
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHH-----hCCCEEEEeCCC
Q psy13351 480 RSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYL-----EEGKVVIFAGGI 545 (837)
Q Consensus 480 ~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll-----~~g~VPVv~G~~ 545 (837)
+...|.+...+..+++.+|+.+|+..|+++..+++.+++.+ +.......+...+ ..+.|||++||.
T Consensus 162 ~~~~d~ils~GE~lSa~lla~~L~~~Gi~a~~lda~~~gi~t~~~~~~a~i~~~~~~~l~~~l~~~~~~~~~v~Vv~GFi 241 (521)
T PLN02551 162 PRTRDYLVSFGERMSTRIFAAYLNKIGVKARQYDAFDIGFITTDDFTNADILEATYPAVAKRLHGDWIDDPAVPVVTGFL 241 (521)
T ss_pred hHHHHHHHhHHHHHHHHHHHHHHHHCCCCcEEechHHcceEecCCCCccchhhhhHHHHHHHHHhhhccCCeEEEEcCcc
Confidence 33344444445555899999999999999999999887322 1122233343433 356899999998
Q ss_pred CCC---C-Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHH
Q psy13351 546 GNP---F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAF 612 (837)
Q Consensus 546 G~~---~-~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa 612 (837)
|.. + ++ +|+.|+.+|.+|+|+.+.+||||||||++||+..|+|+++++++|+|+.+ +|++++||.|.
T Consensus 242 g~~~~~G~~ttLGRGGSD~sA~~la~~L~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai 321 (521)
T PLN02551 242 GKGWKTGAITTLGRGGSDLTATTIGKALGLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSM 321 (521)
T ss_pred ccCCCCCcEEecCCChHHHHHHHHHHHcCCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHH
Confidence 843 2 22 99999999999999999999999999999999999999999999999988 79999999999
Q ss_pred HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeeehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCcccccee
Q psy13351 613 SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNI 692 (837)
Q Consensus 613 ~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i 692 (837)
.+|++++||++|.|.++|+ ..||+|.++..+ +...+..|
T Consensus 322 ~pa~~~~Ipi~vknt~~p~---------~~GT~I~~~~~~--------------------------------~~~~v~~I 360 (521)
T PLN02551 322 RPAREGDIPVRVKNSYNPT---------APGTLITKTRDM--------------------------------SKAVLTSI 360 (521)
T ss_pred HHHHHCCceEEEEecCCCC---------CCCcEEeccccc--------------------------------CCCcccce
Confidence 9999999999999999873 579999653200 00001111
Q ss_pred EEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCcccee-cCCeeEEeCCCCCH
Q psy13351 693 QVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTI-QGNIIYVSIPPLTK 759 (837)
Q Consensus 693 ~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~-~~~~i~v~iP~~T~ 759 (837)
.-.++++.|++.+..++- .+.....|..++.+.+.++.-.. ....|.+.+++-..
T Consensus 361 --------t~~~~v~li~i~~~~m~~----~~g~~arvf~~l~~~~I~Vd~IssSe~sIs~~v~~~~~ 416 (521)
T PLN02551 361 --------VLKRNVTMLDIVSTRMLG----QYGFLAKVFSTFEDLGISVDVVATSEVSISLTLDPSKL 416 (521)
T ss_pred --------ecCCCeEEEEEecCCCCC----cccHHHHHHHHHHHcCCcEEEEeccCCEEEEEEehhHh
Confidence 112444555544433222 35667788888888877655443 34678888877443
No 86
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.85 E-value=1.2e-20 Score=202.74 Aligned_cols=158 Identities=26% Similarity=0.303 Sum_probs=129.2
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh-----hcc----chHHHHH---HHhCCCEEEEeCCCCCC
Q psy13351 481 STADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL-----ESY----IPLNAIK---YLEEGKVVIFAGGIGNP 548 (837)
Q Consensus 481 ~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~----~~~~i~~---ll~~g~VPVv~G~~G~~ 548 (837)
...+.+...+..+++.+|+.+|+..|+++..+++.++-... ... ....+.. .+..+.|||++||.|.+
T Consensus 111 ~~~d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~ 190 (292)
T cd04258 111 ASRDELLSFGERMSSLLFSEALREQGVPAEWFDVRTVLRTDSRFGRAAPDLNALAELAAKLLKPLLAGTVVVTQGFIGST 190 (292)
T ss_pred HhHhHhhhHHHHHHHHHHHHHHHhCCCCeEEEchHHeEEecCCCccccccHHHHHHHHHHHHHHhhcCCEEEECCccccC
Confidence 34566666666678999999999999999999997761110 011 1111222 23467999999998854
Q ss_pred --C-Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHH
Q psy13351 549 --F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR 616 (837)
Q Consensus 549 --~-~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~ 616 (837)
+ ++ +|++|+++|.+|+|+.+++||||||||++||+.+|+|++++.++|+|+.+ .|++++||.|..+|.
T Consensus 191 ~~G~~ttLGrggsD~~a~~~a~~l~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~ 270 (292)
T cd04258 191 EKGRTTTLGRGGSDYSAALLAEALHAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAI 270 (292)
T ss_pred CCCCEEecCCCchHHHHHHHHHHcCCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHH
Confidence 2 22 79999999999999999999999999999999999999999999999988 799999999999999
Q ss_pred hCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 617 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 617 ~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++++|++|.|.++|+ ..||+|+
T Consensus 271 ~~~ipi~i~~~~~p~---------~~GT~I~ 292 (292)
T cd04258 271 RKNIPVFVGSSKDPE---------AGGTLIT 292 (292)
T ss_pred HcCCcEEEEeCCCCC---------CCCceeC
Confidence 999999999999884 5799984
No 87
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.85 E-value=1.8e-20 Score=202.50 Aligned_cols=225 Identities=17% Similarity=0.151 Sum_probs=158.0
Q ss_pred HHHHHHhhhhhhhccC-CCccc--cccchhhhhhhhHHhhhcCceEEEEeCcchh---hhcccccc---cCCCcchHHHH
Q psy13351 416 LAVLKAQQLGEALMKG-DAYNI--NSSIIKNIISEISEIVSCGIELAIVIGGGNI---CRGISNKI---QNIDRSTADYM 486 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g-~~~~i--~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~---~~~~~~~~---~~~~~~~~~~~ 486 (837)
++|+++ .|.++... -...+ ..+.+.+++++|+.|...|+++|||||||.. .+...... .+++..+++.+
T Consensus 4 ~iVI~l--GGnAl~~~~~~~~~~~~~~~~~~~a~dia~l~~~G~~lVivHG~GPqI~~~l~~~~~~~~~~g~rvt~~~~~ 81 (316)
T PRK12352 4 LVVVAI--GGNSIIKDNASQSIEHQAEAVKAVADTVLEMLASDYDIVLTHGNGPQVGLDLRRAEIAHEREGLPLTPLANC 81 (316)
T ss_pred EEEEEE--ChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHcCcccccCCCCCCCHHHH
Confidence 467775 55555432 11122 3357899999999999999999999999822 22112221 23456666645
Q ss_pred HHHHHHH----HHHHHHHHHHHcCCce-------eEeehhchhh------------------------------------
Q psy13351 487 GMLATII----NSLALFDILNKSGIIS-------HVMSAISIEK------------------------------------ 519 (837)
Q Consensus 487 ~~~~~~~----~~~ll~~~L~~~gi~a-------~~l~~~~~~~------------------------------------ 519 (837)
.....+. ....|...|..+|..+ +.+++.|...
T Consensus 82 v~~~~g~i~~~i~~~L~~~l~~~g~~~~~~vvt~v~vs~~D~~f~~~~kpiG~~y~~~~a~~~~~~~~~~~~~~d~g~G~ 161 (316)
T PRK12352 82 VADTQGGIGYLIQQALNNRLARHGEKKAVTVVTQVEVDKNDPGFAHPTKPIGAFFSESQRDELQKANPDWRFVEDAGRGY 161 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCeeEEEEEEEECCCCccccCCcccccCcccHHHHHHHhhhcCCceEeecCCCCe
Confidence 5545543 3444566677777443 4445332210
Q ss_pred --------hhhccchHHHHHHHhCCCEEEEeCCCCCCC--------------CcchHHHHHHHHHcCCcEEEEeeccCcc
Q psy13351 520 --------FLESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGI 577 (837)
Q Consensus 520 --------~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~--------------~s~D~lAa~lA~~L~Ad~liilTDVdGV 577 (837)
.++.++.+.|..+++.|+|||.+|+.|.|. +++|++|+.+|.+|+||+|+|+||||||
T Consensus 162 rrvv~sp~pv~~V~~~~I~~ll~~g~iVi~~ggggiPv~~~~~g~~~n~~~nInaD~aAa~iA~aL~AdkLI~LTDV~GV 241 (316)
T PRK12352 162 RRVVASPEPKRIVEAPAIKALIQQGFVVIGAGGGGIPVVRTDAGDYQSVDAVIDKDLSTALLAREIHADILVITTGVEKV 241 (316)
T ss_pred EEecCCCCCceEEcHHHHHHHHHCCCEEEecCCCCCCEEeCCCCCccCceeeecHHHHHHHHHHHhCCCEEEEEeCchhh
Confidence 034567889999999999966665444331 4489999999999999999999999999
Q ss_pred ccCCCCCCCCceeccccCHHHHHH--------hccccchHHHHHHHHhCCC-CEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 578 YNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 578 y~~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|+++|+ |++++|++++..|+.+ .|+|.+|+.||..+.+.|+ +++|++ ++.+.++|.|+ .||+|..
T Consensus 242 ~~d~~~--~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~al~g~-~GT~I~~ 315 (316)
T PRK12352 242 CIHFGK--PQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAALRGE-TGTHIIK 315 (316)
T ss_pred ccCCCC--CCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHHHcCC-CCeEEEe
Confidence 988764 6788999999988755 3789999998865555555 788885 77799999998 8999974
No 88
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.85 E-value=1.6e-20 Score=202.51 Aligned_cols=157 Identities=22% Similarity=0.296 Sum_probs=125.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhh-------ccc---hHHHHHHHh--CCCEEEEeCCCCCC--C
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLE-------SYI---PLNAIKYLE--EGKVVIFAGGIGNP--F 549 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~-------~~~---~~~i~~ll~--~g~VPVv~G~~G~~--~ 549 (837)
+.+...+..+++.+|+.+|++.|+++..+++.++-.... .+. .+.+...+. .+.|||++||.|.. +
T Consensus 126 d~i~s~GE~lSa~l~a~~L~~~Gi~a~~ld~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~GFig~~~~G 205 (306)
T cd04247 126 DLVISTGEKLSCRFMAAVLRDRGVDAEYVDLSHIVDLDFSIEALDQTFYDELAQVLGEKITACENRVPVVTGFFGNVPGG 205 (306)
T ss_pred HHHhhHHHHHHHHHHHHHHHhCCCCeEEEcHHHheecCCCccccccchhHHHHHHHHHHhhccCCceEEeeccEecCCCC
Confidence 344444444589999999999999999999877621100 111 111222222 57899999998843 2
Q ss_pred -Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCC
Q psy13351 550 -FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQK 619 (837)
Q Consensus 550 -~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~g 619 (837)
.+ +|++|+++|..|+|+.+++||||||||++||+.+|+|++|++++|+|+.+ +|++++||.|+.+|.+++
T Consensus 206 ~~ttLGRgGsD~~A~~la~~l~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~ 285 (306)
T cd04247 206 LLSQIGRGYTDLCAALCAVGLNADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKAR 285 (306)
T ss_pred CeEEeCCCchHHHHHHHHHHcCCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcC
Confidence 22 99999999999999999999999999999999999999999999999988 699999999999999999
Q ss_pred CCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 620 LPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 620 i~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
||++|.|.++|+ ..||+|.|.
T Consensus 286 Ipi~i~nt~~P~---------~~GT~I~~~ 306 (306)
T cd04247 286 IPIRIKNVENPR---------GEGTVIYPD 306 (306)
T ss_pred CcEEEecCCCCC---------CCCcEEcCC
Confidence 999999999884 579999763
No 89
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.84 E-value=2e-20 Score=203.35 Aligned_cols=141 Identities=19% Similarity=0.235 Sum_probs=116.0
Q ss_pred HHHHHHcCCceeEeehhchhhh------------hhccchHHHHHHHhCCCEEEEeCCCCCC-C-C------cchHHHHH
Q psy13351 499 FDILNKSGIISHVMSAISIEKF------------LESYIPLNAIKYLEEGKVVIFAGGIGNP-F-F------TTDTTAAL 558 (837)
Q Consensus 499 ~~~L~~~gi~a~~l~~~~~~~~------------~~~~~~~~i~~ll~~g~VPVv~G~~G~~-~-~------s~D~lAa~ 558 (837)
++.|-..|+++..+++.++-.. ....+.+.+..+++.|.|||++|+.|+. + . ++|++|+.
T Consensus 108 Sa~Lla~gi~a~~vd~~~~i~t~~~~~~a~~~~~~~~~~~~~l~~~l~~g~IpVv~Gf~~~~~G~~ttlGRGgSD~~Aa~ 187 (327)
T TIGR02078 108 SAVIFAEGINGKVVDPWDIFFAKGDFGNAFIDIKKSKRNAKILYEVLESGKIPVIPGFYGNLNGYRVTLGRGGSDYSAVA 187 (327)
T ss_pred HHHHHHccCCcEEEcHHHHhccCCcCCceeechhhhHhhHHHHHHHHhCCcEEEEeCCccCCCCeEEEcCCCChHHHHHH
Confidence 3333345889999888765111 1123456777888999999999987743 1 1 38999999
Q ss_pred HHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHH
Q psy13351 559 RAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR 635 (837)
Q Consensus 559 lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~ 635 (837)
+|..|+||.+++||||||||++||+.+|+|+++++++++|+.+ .|++++|+.|+++|.++|+|++|.|.++|+
T Consensus 188 lA~~L~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~---- 263 (327)
T TIGR02078 188 LGVLLNSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR---- 263 (327)
T ss_pred HHHhcCCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC----
Confidence 9999999999999999999999999999999999999999876 677899999999999999999999998762
Q ss_pred HHcCCccceEEEEe
Q psy13351 636 VIEGKNEGTLVYEI 649 (837)
Q Consensus 636 al~Ge~~GT~I~~~ 649 (837)
.||+|+..
T Consensus 264 ------~GT~I~~~ 271 (327)
T TIGR02078 264 ------MGTLISNR 271 (327)
T ss_pred ------CCcEEecC
Confidence 59999754
No 90
>PRK09034 aspartate kinase; Reviewed
Probab=99.84 E-value=3.8e-20 Score=212.07 Aligned_cols=266 Identities=17% Similarity=0.173 Sum_probs=180.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC--C-
Q psy13351 482 TADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP--F- 549 (837)
Q Consensus 482 ~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~--~- 549 (837)
..|.+...+..+++.+|+.+|+..|+++..+++.+++.. +.......+..++..+.|||++||.|.. +
T Consensus 111 ~~d~l~s~GE~~S~~l~a~~L~~~g~~a~~~~~~~~~~~t~~~~~~a~i~~~~~~~~~~~~~~~~v~Vv~GFig~~~~g~ 190 (454)
T PRK09034 111 LLDAFKARGEDLNAKLIAAYLNYEGIPARYVDPKEAGIIVTDEPGNAQVLPESYDNLKKLRDRDEKLVIPGFFGVTKDGQ 190 (454)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcEEEchHHceEEecCCcCceeEcHhhHHHHHHHHhcCCEEEecCccccCCCCC
Confidence 344444444555899999999999999999999887332 1112345666666678899999998732 2
Q ss_pred C------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCC
Q psy13351 550 F------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL 620 (837)
Q Consensus 550 ~------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi 620 (837)
+ .+|+.|+.+|.+|+||.+.+||||||||++||+.+|+|+++++++|+|+.+ .|.+++||.|+.+|.++++
T Consensus 191 ~ttlgRggSD~tA~~la~~l~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~I 270 (454)
T PRK09034 191 IVTFSRGGSDITGAILARGVKADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGI 270 (454)
T ss_pred EEecCCCcHHHHHHHHHHHcCCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCC
Confidence 1 299999999999999999999999999999999999999999999999988 7999999999999999999
Q ss_pred CEEEEEccCcchHHHHHcCCccceEEEEeee----hhh------hhhh-hhHHH-hHHHHHHHHHHHHHhhhcCCCCccc
Q psy13351 621 PIRVFSIIKSGALKRVIEGKNEGTLVYEIYI----MII------SDIK-KNTKQ-KMLNTIKILKENLKKVRTGRANIGM 688 (837)
Q Consensus 621 ~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~----~v~------~~i~-~~~~~-~m~~~i~~~~~~l~~irtgr~~p~~ 688 (837)
|++|.|.++|+ ..||+|..... ..+ +.+. -.+.. .|......+.+=|.-+.....++.+
T Consensus 271 pi~v~~~~~p~---------~~GT~I~~~~~~~~~~~Vk~It~~~~i~~Itv~~~~~~~~~g~~a~if~~la~~~I~Vd~ 341 (454)
T PRK09034 271 PINIKNTNNPE---------DPGTLIVPDRDNKNKNPITGIAGDKGFTSIYISKYLMNREVGFGRKVLQILEDHGISYEH 341 (454)
T ss_pred CEEEEcCCCCC---------CCccEEEeccccCccccceEEEecCCEEEEEEccCCCCCCccHHHHHHHHHHHcCCeEEE
Confidence 99999998873 56999986521 111 1110 01111 1333334444444445555666666
Q ss_pred cce----eEEEecccccc-------cce------eeeeeccCC-ceEEEe---c-CCcccHHHHHHHHHhcCCCcccee-
Q psy13351 689 LDN----IQVKYHEHLTK-------LLK------IANITLFNS-HTISIQ---P-FEKEMSSIIKKAINEANLGLNPTI- 745 (837)
Q Consensus 689 ld~----i~V~~~g~~~~-------L~~------lA~v~~~~~-~~l~i~---~-~d~~~~~~I~kaI~~s~l~~~p~~- 745 (837)
+.. +.+-....... +.+ ...|++.+. ..+.|. . -++.....+..++.+.++++.-..
T Consensus 342 i~ss~~sis~~v~~~~~~~a~~~~l~~el~~~~~~~~I~~~~~va~VsivG~g~~~~~gv~arif~aL~~~~InV~mIsq 421 (454)
T PRK09034 342 MPSGIDDLSIIIRERQLTPKKEDEILAEIKQELNPDELEIEHDLAIIMVVGEGMRQTVGVAAKITKALAEANINIQMINQ 421 (454)
T ss_pred EcCCCcEEEEEEeHHHhhHHHHHHHHHHHHHhhCCceEEEeCCEEEEEEECCCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 633 44333322110 111 133444432 223331 1 246788889999987777664332
Q ss_pred --cCCeeEEeCCC
Q psy13351 746 --QGNIIYVSIPP 756 (837)
Q Consensus 746 --~~~~i~v~iP~ 756 (837)
....|.+.+|.
T Consensus 422 ~~Se~~Is~vV~~ 434 (454)
T PRK09034 422 GSSEISIMFGVKN 434 (454)
T ss_pred cCCcceEEEEEcH
Confidence 34567777765
No 91
>PRK12354 carbamate kinase; Reviewed
Probab=99.84 E-value=1.4e-20 Score=200.82 Aligned_cols=224 Identities=22% Similarity=0.198 Sum_probs=159.6
Q ss_pred HHHHHhhhhhhhccC-CCcccc--ccchhhhhhhhHHhhhcCceEEEEeCcchh-h--hcccccccCCCcchHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKG-DAYNIN--SSIIKNIISEISEIVSCGIELAIVIGGGNI-C--RGISNKIQNIDRSTADYMGMLA 490 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g-~~~~i~--~~~i~~la~~I~~l~~~G~~vVIVhGGG~~-~--~~~~~~~~~~~~~~~~~~~~~~ 490 (837)
+|+++ +|+++... .+.... .+.++..|++|+++.+ ||++||+||+|.. . +.........++.+++.+.+..
T Consensus 3 iVial--GGnal~~~~~~~~~~~~~~~v~~~a~~ia~~~~-~~~vvi~HGnGpqvG~~~~~~~~~~~~~~~pl~~~~a~s 79 (307)
T PRK12354 3 IVVAL--GGNALLRRGEPLTAENQRANIRIAAEQIAKIAR-EHELVIVHGNGPQVGLLALQNAAYKDVTPYPLDVLGAET 79 (307)
T ss_pred EEEEe--ccHHhCCCCCCcCHHHHHHHHHHHHHHHHHHhC-CCeEEEEeCCccHHhHHHHHHHHhcCCCCCCcchhcccc
Confidence 35554 56666543 344555 3489999999999988 9999999999854 1 1111111122567888888888
Q ss_pred HHHHHHHHHHHHHHcC----CceeE----eehhc---------hhh---------------------------------h
Q psy13351 491 TIINSLALFDILNKSG----IISHV----MSAIS---------IEK---------------------------------F 520 (837)
Q Consensus 491 ~~~~~~ll~~~L~~~g----i~a~~----l~~~~---------~~~---------------------------------~ 520 (837)
.++.+++++..|.+.= +..+. +...+ ++. .
T Consensus 80 qg~iGy~l~q~l~~~l~~~~v~tivtq~~Vd~~dpAf~~ptKpiG~~y~~~~a~~~~~e~g~~~~~dg~g~rrVv~SP~P 159 (307)
T PRK12354 80 EGMIGYMLEQELGNLLPERPVATLLTQVEVDANDPAFANPTKPIGPVYDEAEAERLAAEKGWTIKPDGDYFRRVVPSPRP 159 (307)
T ss_pred cchHHHHHHHHHHHHhcCCcceEEEEEEEEcCCCCccCCCCCCcCcccCHHHHHHHHHhcCCEEeecCCceEEEecCCCC
Confidence 8888888877753321 21111 11110 100 0
Q ss_pred hhccchHHHHHHHhCCCEEEEeCCCCCCC--------------CcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCC
Q psy13351 521 LESYIPLNAIKYLEEGKVVIFAGGIGNPF--------------FTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL 586 (837)
Q Consensus 521 ~~~~~~~~i~~ll~~g~VPVv~G~~G~~~--------------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~ 586 (837)
...++.+.+..++++|+|||.+|+.|.|. +++|++|++||..|+||.|+|+|||||||++++ .|
T Consensus 160 ~~ive~~~I~~Ll~~g~ivIa~GGGGIPV~~~~~~~~~gv~aViD~D~~Aa~LA~~l~Ad~LiiLTdVdGVy~~~~--~p 237 (307)
T PRK12354 160 KRIVEIRPIRWLLEKGHLVICAGGGGIPVVYDADGKLHGVEAVIDKDLAAALLAEQLDADLLLILTDVDAVYLDWG--KP 237 (307)
T ss_pred cceeCHHHHHHHHHCCCEEEEeCCCccCeEecCCCceeeeeecCCccHHHHHHHHHcCCCEEEEEeCCcceecCCC--CC
Confidence 11246788999999999988887666541 347999999999999999999999999999865 47
Q ss_pred CceeccccCHHHHHH----hccccchHHHHH-HHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 587 SAIIYKKITFDEVIS----KKLEIMDSTAFS-FCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 587 ~a~~I~~is~~e~~~----~G~~v~~~~Aa~-~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++++|++++.+++.+ .|+|.+|+.|+. ++.+.+.+++|. .++.+.++|.|+ .||+|.+.
T Consensus 238 ~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~---~~~~l~~al~G~-~GT~I~~~ 301 (307)
T PRK12354 238 TQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIG---SLEDIQAILAGE-AGTRISPE 301 (307)
T ss_pred CCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEEC---CHHHHHHHHCCC-CceEEecC
Confidence 899999999988876 689999999884 455556567764 356789999997 79999874
No 92
>PRK09084 aspartate kinase III; Validated
Probab=99.84 E-value=3.6e-20 Score=211.80 Aligned_cols=157 Identities=22% Similarity=0.271 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhc-----c--------chHHHHHHHhCCCEEEEeCCCCCC-
Q psy13351 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLES-----Y--------IPLNAIKYLEEGKVVIFAGGIGNP- 548 (837)
Q Consensus 483 ~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~-----~--------~~~~i~~ll~~g~VPVv~G~~G~~- 548 (837)
.+.+...+..+++.+++.+|...|+++..+++.++-..... . ....+.++++.+ |||++||.|..
T Consensus 109 ~d~i~s~GE~lSa~l~~~~L~~~Gi~a~~l~~~~~i~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~Vv~Gf~g~~~ 187 (448)
T PRK09084 109 TDELVSHGELMSTLLFVELLRERGVQAEWFDVRKVMRTDDRFGRAEPDVAALAELAQEQLLPLLAEG-VVVTQGFIGSDE 187 (448)
T ss_pred hhhhhhHHHHHHHHHHHHHHHhCCCCcEEEchHHeEEecCCCCcccccHHHHHHHHHHHHHHhhcCC-cEEecCeeecCC
Confidence 34444444445899999999999999999998775111000 0 113445556777 99999987742
Q ss_pred -CC-------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHh
Q psy13351 549 -FF-------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRD 617 (837)
Q Consensus 549 -~~-------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~ 617 (837)
+. .+|++|+++|..|+||.+++|||||||||+||+.+|+|+++++++|+|+.+ .|++++||.+..+|.+
T Consensus 188 ~G~~ttLgRggSD~~a~~~a~~l~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~ 267 (448)
T PRK09084 188 KGRTTTLGRGGSDYSAALLAEALNASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVR 267 (448)
T ss_pred CCCEeecCCCchHHHHHHHHHHcCCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHH
Confidence 21 289999999999999999999999999999999999999999999999988 7999999999999999
Q ss_pred CCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 618 QKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 618 ~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
+++|++|.|+.+|+ ..||+|.+.
T Consensus 268 ~~i~i~i~~~~~~~---------~~GT~I~~~ 290 (448)
T PRK09084 268 SNIPVFVGSSKDPE---------AGGTWICND 290 (448)
T ss_pred cCCcEEEEeCCCCC---------CCceEEecC
Confidence 99999999999884 479999754
No 93
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=99.84 E-value=1.3e-20 Score=197.95 Aligned_cols=178 Identities=21% Similarity=0.197 Sum_probs=138.3
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhcc---cccc----cC---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKI----QN---IDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~---~~~~----~~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+.+++++|+.+++.|.++|||||||...... .... .+ .++..++...++..+..+..+.+.|..+|++++
T Consensus 15 ~~~~~~~i~~l~~~g~~~VlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~~~~~~~~~~g~~~~~i~~~L~~~G~~a~ 94 (231)
T TIGR00761 15 LEAFASDIAFLRAVGIKPVIVHGGGPEINELLEALGIPPEFKNGLRVTDKETLEVVEMVLIGQVNKELVALLNKHGINAI 94 (231)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHcCCCCEecCCCccCCHHHHHHHHHHHhcchHHHHHHHHHhCCCCcc
Confidence 8899999999999999999999998443221 1111 11 233444555555554555667779999999999
Q ss_pred Eeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeCCCCCC------CCcchHHHHHHHHHcCCcEEE
Q psy13351 511 VMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAGGIGNP------FFTTDTTAALRAAEIKAEIIL 569 (837)
Q Consensus 511 ~l~~~~~~~~---------------~~~~~~~~i~~ll~~g~VPVv~G~~G~~------~~s~D~lAa~lA~~L~Ad~li 569 (837)
++++.+.+.+ +..++.+.+..++++|+|||++|. |.+ ++++|++|+.+|..|+||+|+
T Consensus 95 ~l~~~~~~~it~~~~~~~~~~~~g~i~~i~~~~i~~~l~~g~IPVi~~~-~~~~~g~~~~l~sD~~A~~lA~~l~A~~li 173 (231)
T TIGR00761 95 GLTGGDGQLFTARSLDKEDLGYVGEIKKVNKALLEALLKAGYIPVISSL-ALTAEGQALNVNADTAAGALAAALGAEKLV 173 (231)
T ss_pred cccCCCCCEEEEEECCCccCCcccceEEEcHHHHHHHHHCCCeEEECCC-ccCCCCcEEEeCHHHHHHHHHHHcCCCEEE
Confidence 9988864221 344678899999999999999983 321 356999999999999999999
Q ss_pred EeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHhCCCCEEE
Q psy13351 570 KATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRDQKLPIRV 624 (837)
Q Consensus 570 ilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I 624 (837)
|+|||||||++||+ ++|++++++|+.+ .|+|..|+.++..|.+.|++.+.
T Consensus 174 ~ltdv~Gv~~~d~~-----~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v~ 230 (231)
T TIGR00761 174 LLTDVPGILNGDGQ-----SLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSVH 230 (231)
T ss_pred EEECCCCeecCCCC-----eeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEEE
Confidence 99999999999873 6899999877655 58999999999999999997553
No 94
>PRK09411 carbamate kinase; Reviewed
Probab=99.84 E-value=5.3e-20 Score=194.66 Aligned_cols=216 Identities=21% Similarity=0.230 Sum_probs=163.7
Q ss_pred hhhhhccC-CCcccccc--chhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccccccCCCcchHHHHHHHHHHHHHH
Q psy13351 424 LGEALMKG-DAYNINSS--IIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGMLATIINSL 496 (837)
Q Consensus 424 ~gs~~~~g-~~~~i~~~--~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 496 (837)
+|.++... .+.....+ .++..|+.|+.+.+. |++||+||.| ......... ...++.+++.+++...|+.++
T Consensus 9 GGNAl~~~g~~~~~~~q~~~v~~~a~~ia~l~~~-~~~vitHGNGPQVG~l~~~~~~~-~~~~~~pld~~~a~sqG~iGy 86 (297)
T PRK09411 9 GGNALLQRGEALTAENQYRNIASAVPALARLARS-YRLAIVHGNGPQVGLLALQNLAW-KEVEPYPLDVLVAESQGMIGY 86 (297)
T ss_pred CchhhcCCCCCcCHHHHHHHHHHHHHHHHHHHHc-CCEEEEeCCccHHHHHHHHHHhh-cCCCCCCchhhhhhcccHHHH
Confidence 55555542 23344444 788899999999887 9999999986 444432222 233788999999999999999
Q ss_pred HHHHHHHHcCCceeEe--------ehhch---------h---------------------------h------hhhccch
Q psy13351 497 ALFDILNKSGIISHVM--------SAISI---------E---------------------------K------FLESYIP 526 (837)
Q Consensus 497 ll~~~L~~~gi~a~~l--------~~~~~---------~---------------------------~------~~~~~~~ 526 (837)
+|+..|.+.++..-.. ++.|- + . ....++.
T Consensus 87 ~l~q~l~~~~~~~~v~t~~Tq~~Vd~~DpaF~~PtKpiG~~y~~e~a~~l~~e~g~~~~~dg~g~rrVVpSP~P~~iVe~ 166 (297)
T PRK09411 87 MLAQSLSAQPQMPPVTTVLTRIEVSPDDPAFLQPEKFIGPVYQPEEQEALEAAYGWQMKRDGKYLRRVVASPQPRKILDS 166 (297)
T ss_pred HHHHHHHHcCCCCCeEEEEEEEEECCCCccccCCCCccCCccCHHHHHHHHHhcCCEEEecCCceEEEccCCCCcceECH
Confidence 9999998887543111 11110 0 0 0133577
Q ss_pred HHHHHHHhCCCEEEEeCCCCCC----------CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCH
Q psy13351 527 LNAIKYLEEGKVVIFAGGIGNP----------FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF 596 (837)
Q Consensus 527 ~~i~~ll~~g~VPVv~G~~G~~----------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~ 596 (837)
+.|..++++|.|||.+|+.|.| ++++|++|+.||..|+||+|+|+|||||||++++ .|++++|++++.
T Consensus 167 ~~I~~Ll~~G~IVI~~gGGGIPV~~~~~G~e~vIDkD~~Aa~LA~~L~Ad~LIiLTDVdGV~~n~~--~p~~~~I~~it~ 244 (297)
T PRK09411 167 EAIELLLKEGHVVICSGGGGVPVTEDGAGSEAVIDKDLAAALLAEQINADGLVILTDADAVYENWG--TPQQRAIRHATP 244 (297)
T ss_pred HHHHHHHHCCCEEEecCCCCCCeEEcCCCeEEecCHHHHHHHHHHHhCCCEEEEEeCchhhccCCC--CCCCcCCCCcCH
Confidence 8999999999998888765544 2459999999999999999999999999998764 478899999999
Q ss_pred HHHHH----hccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 597 DEVIS----KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 597 ~e~~~----~G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
+++.. .|+|.+|+.|+ +++.+.|.+++|.+ ++.+.+++.|+ .||+|.
T Consensus 245 ~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~-~GT~I~ 296 (297)
T PRK09411 245 DELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE-AGTCIS 296 (297)
T ss_pred HHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC-CCeEEe
Confidence 88865 68999999987 66676777887753 66788999998 799985
No 95
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.82 E-value=7.6e-20 Score=196.71 Aligned_cols=214 Identities=18% Similarity=0.162 Sum_probs=158.8
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc---cccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~~----~---~~~~~~~ 484 (837)
+++++|+ .|+++. + +.+++++++|+.+.+.|+++|||||||.....+. .... + .++..++
T Consensus 19 ~~~VIKl--GG~ai~-~-------~~l~~~~~~ia~l~~~g~~~ViVHGggp~i~~~~~~~gi~~~~~~G~RvT~~~~l~ 88 (280)
T cd04237 19 KTFVIAF--GGEAVA-H-------PNFDNIVHDIALLHSLGIRLVLVHGARPQIDQRLAERGLEPRYHRGLRITDAAALE 88 (280)
T ss_pred CEEEEEE--ChHHhc-C-------chHHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCccccCCcCcCCHHHHH
Confidence 4678884 444432 1 2457899999999999999999999994443322 1211 1 2556667
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehh-----chh------------------hhhhccchHHHHHHHhCCCEEEE
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAI-----SIE------------------KFLESYIPLNAIKYLEEGKVVIF 541 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~-----~~~------------------~~~~~~~~~~i~~ll~~g~VPVv 541 (837)
...++ .+..+..+.+.|+. |++++++++. +.. ..+..++.+.+..++++|++||+
T Consensus 89 ~~~~~-~g~v~~~l~~~l~~-~~~a~~~~~~~~~~~~~~~v~~~~~~~~~~~~~g~~G~v~~v~~~~i~~lL~~g~ipv~ 166 (280)
T cd04237 89 CVKEA-AGAVRLEIEALLSM-GLPNSPMAGARIRVVSGNFVTARPLGVVDGVDFGHTGEVRRIDADAIRRQLDQGSIVLL 166 (280)
T ss_pred HHHHH-HHHHHHHHHHHHHh-hccccCcCCCceEEecCeEEEEEECCcccCceEeeeccEEEEcHHHHHHHHHCCCEEEE
Confidence 76666 46677778888855 8877654321 110 01344688999999999999999
Q ss_pred eCCC----CCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH--------hccccch
Q psy13351 542 AGGI----GNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLEIMD 608 (837)
Q Consensus 542 ~G~~----G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~ 608 (837)
++.. |.. ++++|.+|+.||..|+|++|+|+|||||||++ +++++++++.+++.+ .|+|.+|
T Consensus 167 ~~~g~~~~g~~lnvnaD~~A~~LA~~L~a~klv~ltdv~GV~~~------~~~~i~~i~~~e~~~l~~~~~~~~ggM~~K 240 (280)
T cd04237 167 SPLGYSPTGEVFNLSMEDVATAVAIALKADKLIFLTDGPGLLDD------DGELIRELTAQEAEALLETGALLTNDTARL 240 (280)
T ss_pred CCceECCCCCEEeeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCccccCCHHHHHHHHHcCCCCCCCHHHH
Confidence 8721 111 46799999999999999999999999999974 357889998766654 4889999
Q ss_pred HHHHHHHHhCCC-CEEEEEccCcchHHHHHc-CCccceEE
Q psy13351 609 STAFSFCRDQKL-PIRVFSIIKSGALKRVIE-GKNEGTLV 646 (837)
Q Consensus 609 ~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al~-Ge~~GT~I 646 (837)
++++..+.+.|+ +++|+++..|+.+...|. .+..||+|
T Consensus 241 v~~a~~a~~~Gv~~v~I~~~~~~~~ll~elft~~g~GT~i 280 (280)
T cd04237 241 LQAAIEACRGGVPRVHLISYAEDGALLLELFTRDGVGTLI 280 (280)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCHHHHHHhcCCCCCCcC
Confidence 999999899999 799999999999887554 55689975
No 96
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.81 E-value=2.3e-18 Score=209.66 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=127.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------hhccchHHHHHHH-hCCCEEEEeCCCCCC--C-C
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------LESYIPLNAIKYL-EEGKVVIFAGGIGNP--F-F 550 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~~~~~~~~i~~ll-~~g~VPVv~G~~G~~--~-~ 550 (837)
+.+...+..+++.+|+.+|.+.|+++..+++.++-.. ........+.+++ +.+.|||++||.|.. + .
T Consensus 120 d~i~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~i~t~~~~~~~~~~~~~~~~~i~~~~~~~~~v~Vv~Gfig~~~~G~~ 199 (819)
T PRK09436 120 AAIISRGERLSIAIMAAVLEARGHDVTVIDPRELLLADGHYLESTVDIAESTRRIAASFIPADHVILMPGFTAGNEKGEL 199 (819)
T ss_pred hheeeHHHHHHHHHHHHHHHhCCCCeEEECHHHeEEecCCCCCceechHhhHHHHHHHHhcCCcEEEecCcccCCCCCCE
Confidence 3333344445789999999999999999988765111 0112234555554 468999999987732 1 1
Q ss_pred c------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 551 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 551 s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+ +|++|+++|..|+||.+++|||||||||+||+.+|+|++|++++|+|+.+ .|.+++|+.|+.+|.++|+|
T Consensus 200 ttlGRgGSD~~A~~~A~~l~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ip 279 (819)
T PRK09436 200 VTLGRNGSDYSAAILAACLDADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIP 279 (819)
T ss_pred EEeCCCCchHHHHHHHHHcCCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCce
Confidence 1 89999999999999999999999999999999999999999999999987 69999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|.|+++|+ ..||+|+.+
T Consensus 280 i~i~n~~~p~---------~~GT~I~~~ 298 (819)
T PRK09436 280 CLIKNTFNPQ---------APGTLIGAE 298 (819)
T ss_pred EEEccCCCCC---------CCceEEEec
Confidence 9999999884 469999764
No 97
>PRK05925 aspartate kinase; Provisional
Probab=99.81 E-value=3.2e-19 Score=202.29 Aligned_cols=158 Identities=21% Similarity=0.194 Sum_probs=126.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh-----hccchH----HHHH-HHhCCCEEEEeCCCCCC--C-
Q psy13351 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL-----ESYIPL----NAIK-YLEEGKVVIFAGGIGNP--F- 549 (837)
Q Consensus 483 ~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~-----~~~~~~----~i~~-ll~~g~VPVv~G~~G~~--~- 549 (837)
.+.+...+..+++.+|+.+|+..|+++..+++.++-... ...+.. .+.. .+..+.|||++||.|.. +
T Consensus 102 ~d~i~s~GE~~Sa~l~a~~L~~~Gi~a~~ld~~~~i~t~~~~~~a~~~~~~~~~~~~~~~~~~~~v~Vv~GF~g~~~~G~ 181 (440)
T PRK05925 102 QARILAIGEDISASLICAYCCTYVLPLEFLEARQVILTDDQYLRAVPDLALMQTAWHELALQEDAIYIMQGFIGANSSGK 181 (440)
T ss_pred hhhheehhHHHHHHHHHHHHHhCCCCeEEEcHHHhEeecCCccccccCHHHHHHHHHHhhccCCcEEEecCcceeCCCCC
Confidence 344444444458999999999999999999997751110 011112 2222 34567899999998742 2
Q ss_pred Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCC
Q psy13351 550 FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKL 620 (837)
Q Consensus 550 ~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi 620 (837)
++ ||++|+++|.+|+||.+++|||||||||+||+.+|+|++|++++++|+.+ .|..+.++.++++|.++|+
T Consensus 182 ~ttLgrGgsD~~AallA~~l~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~I 261 (440)
T PRK05925 182 TTVLGRGGSDFSASLIAELCKAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGI 261 (440)
T ss_pred EEEeccCcHHHHHHHHHHHcCCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCC
Confidence 11 99999999999999999999999999999999999999999999999877 6899999999999999999
Q ss_pred CEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 621 PIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 621 ~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
|++|.|+++|+ +.||+|.+.
T Consensus 262 pi~I~~~~~p~---------~~GT~i~~~ 281 (440)
T PRK05925 262 PIFVTSTFDVT---------KGGTWIYAS 281 (440)
T ss_pred cEEEecCCCCC---------CCccEEecC
Confidence 99999999985 479999763
No 98
>PRK05279 N-acetylglutamate synthase; Validated
Probab=99.81 E-value=1.4e-19 Score=207.79 Aligned_cols=217 Identities=18% Similarity=0.159 Sum_probs=162.1
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc---cccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~~----~---~~~~~~~ 484 (837)
+++|+|. +|+++ .. +.+++++.+|+.+.+.|.++|||||||.....+. .... + .++..++
T Consensus 26 ~~~VIk~--GG~~l-~~-------~~~~~~~~~i~~l~~~g~~~VlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~ 95 (441)
T PRK05279 26 KTFVIML--GGEAI-AH-------GNFSNIVHDIALLHSLGIRLVLVHGARPQIEEQLAARGIEPRYHKGLRVTDAAALE 95 (441)
T ss_pred CEEEEEE--Cchhc-cC-------hhHHHHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHcCCCceecCCcccCCHHHHH
Confidence 4678884 34433 22 1357899999999999999999999994433222 1111 1 2556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhch-----h------------------hhhhccchHHHHHHHhCCCEEEE
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISI-----E------------------KFLESYIPLNAIKYLEEGKVVIF 541 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~-----~------------------~~~~~~~~~~i~~ll~~g~VPVv 541 (837)
...++ .+..+..+.+.|+. |++++++++.++ . ..+..++.+.+..++++|+|||+
T Consensus 96 ~~~~~-~g~v~~~l~~~l~~-g~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~v~~v~~~~i~~ll~~g~ipV~ 173 (441)
T PRK05279 96 CVKQA-AGELRLDIEARLSM-GLPNTPMAGAHIRVVSGNFVTARPLGVDDGVDYQHTGEVRRIDAEAIRRQLDSGAIVLL 173 (441)
T ss_pred HHHHH-HHHHHHHHHHHHhc-cCCCCcccCCcceEeeccEEEEEECCCCCCccccceeeEEEEeHHHHHHHHHCCCeEEE
Confidence 77776 46778888888854 888877544321 0 01334678999999999999999
Q ss_pred eCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH----------hcccc
Q psy13351 542 AGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEI 606 (837)
Q Consensus 542 ~G~----~G~-~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~----------~G~~v 606 (837)
++. .|. -++++|++|+.||..|+||+|+|+|||||||++ ++++|++++.+++.+ .|+|.
T Consensus 174 ~~i~~~~~g~~~ni~~D~~a~~lA~~l~a~~lv~ltdv~GV~~~------~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~ 247 (441)
T PRK05279 174 SPLGYSPTGESFNLTMEEVATQVAIALKADKLIFFTESQGVLDE------DGELIRELSPNEAQALLEALEDGDYNSGTA 247 (441)
T ss_pred CCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCCCccCC------CCchhhhCCHHHHHHHHhhhhcCCCCccHH
Confidence 762 121 146899999999999999999999999999953 367889998766543 48999
Q ss_pred chHHHHHHHHhCCC-CEEEEEccCcchHHHHHcCC-ccceEEEEe
Q psy13351 607 MDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGK-NEGTLVYEI 649 (837)
Q Consensus 607 ~~~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al~Ge-~~GT~I~~~ 649 (837)
.|+.++..+.+.|+ +++|+++..|+++...|.++ ..||+|+++
T Consensus 248 ~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 248 RFLRAAVKACRGGVRRSHLISYAEDGALLQELFTRDGIGTMIVME 292 (441)
T ss_pred HHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHhcCCCCceEEecC
Confidence 99999888888899 79999999999999887765 479999986
No 99
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=99.81 E-value=2.6e-19 Score=189.60 Aligned_cols=196 Identities=15% Similarity=0.159 Sum_probs=146.3
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++++++|+.|...|.++|||||||........ ... + .++..++...++.. ..+..+.+.|.++|++++
T Consensus 14 l~~~~~di~~l~~~g~~~VlVHGgg~~i~~~~~~~gi~~~~~~g~RvT~~~~l~~v~~al~-~vn~~iv~~l~~~g~~a~ 92 (248)
T cd04252 14 LDELAASLSFLQHVGLYPIVVHGAGPQLNEELEAAGVEPEYVDGLRVTDPETLAVARKVFL-EENLKLVEALERNGARAR 92 (248)
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCHHHHHHHHHcCCCcEeeCCcccCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCcc
Confidence 788999999998889999999999955443332 221 1 25566677776655 566678888999999999
Q ss_pred Eeehhchh------------hhhhccchHHHHHHHhCCCEEEEeCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 511 VMSAISIE------------KFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 511 ~l~~~~~~------------~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~-~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
++++..+. ..+..++.+.+..+|+.|+|||++|. .|. -++++|.+|+.+|..|+|++|+|+||
T Consensus 93 ~l~~~~~~a~~~~~~d~g~~G~v~~i~~~~i~~~L~~g~IPVi~p~~~~~~g~~~nvnaD~~A~~lA~aL~a~kli~ltd 172 (248)
T cd04252 93 PITSGVFEAEYLDKDKYGLVGKITGVNKAPIEAAIRAGYLPILTSLAETPSGQLLNVNADVAAGELARVLEPLKIVFLNE 172 (248)
T ss_pred cccCceEEEEECcCccCCccCceeeECHHHHHHHHHCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCeEEEEEC
Confidence 98874221 01345788999999999999999982 221 24679999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHH-HH---HH----hccccchHHHHHHHHhC--C-CCEEEEEccCcchHHHHHcC-Cc
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFD-EV---IS----KKLEIMDSTAFSFCRDQ--K-LPIRVFSIIKSGALKRVIEG-KN 641 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~-e~---~~----~G~~v~~~~Aa~~a~~~--g-i~v~I~ng~~~~~i~~al~G-e~ 641 (837)
|||||++ +.++|++++.. +. .+ +|+|..|+.++..+.+. + ..++|++ ++.+...|.+ +.
T Consensus 173 v~GV~~~------~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll~elf~~~g 243 (248)
T cd04252 173 TGGLLDG------TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQKELFTHSG 243 (248)
T ss_pred CcccCCC------CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHHHHHhcCCC
Confidence 9999975 24678888753 33 22 68999999988888776 3 3566665 5677665554 45
Q ss_pred cceEE
Q psy13351 642 EGTLV 646 (837)
Q Consensus 642 ~GT~I 646 (837)
.||+|
T Consensus 244 ~GT~i 248 (248)
T cd04252 244 AGTLI 248 (248)
T ss_pred CCccC
Confidence 89975
No 100
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.80 E-value=3.4e-19 Score=215.18 Aligned_cols=156 Identities=17% Similarity=0.176 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh--------hhccchHHHHHHHhC--CCEEEEeCCCCCC--C-C
Q psy13351 484 DYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF--------LESYIPLNAIKYLEE--GKVVIFAGGIGNP--F-F 550 (837)
Q Consensus 484 ~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~--------~~~~~~~~i~~ll~~--g~VPVv~G~~G~~--~-~ 550 (837)
|.+...+..+++.+|+.+|+..|+++..+++.++-.. ........+..++.. +.|||++||+|.. + +
T Consensus 123 d~ils~GE~~Sa~lla~~L~~~G~~a~~ld~~~~i~~~~~~~~~i~~~~~~~~l~~~~~~~~~~v~Vv~GF~g~~~~G~~ 202 (810)
T PRK09466 123 AEVVGHGEVWSARLMAALLNQQGLPAAWLDARSFLRAERAAQPQVDEGLSYPLLQQLLAQHPGKRLVVTGFISRNEAGET 202 (810)
T ss_pred hheecHHHHHHHHHHHHHHHhCCCCcEEEcHHHheecCCCCCcccchhhhHHHHHHHHhccCCeEEEeeCccccCCCCCE
Confidence 3333344445799999999999999999998775111 111134567776654 3899999998743 2 2
Q ss_pred c------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 551 T------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 551 s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+ +|++|+.+|..|+|+.+.+||||||||++||+.+|+|++|++++|+|+.+ +|++++||.|.++|.+++||
T Consensus 203 ttLGRGGSD~tA~~la~~l~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ip 282 (810)
T PRK09466 203 VLLGRNGSDYSATLIGALAGVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDID 282 (810)
T ss_pred EEcCCChHHHHHHHHHHHcCCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCe
Confidence 2 89999999999999999999999999999999999999999999999988 89999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
++|.|.++|+ ..||+|..
T Consensus 283 i~V~ntf~p~---------~~GT~I~~ 300 (810)
T PRK09466 283 LQLRCSYQPE---------QGSTRIER 300 (810)
T ss_pred EEEecCCCCC---------CCceEEec
Confidence 9999999874 57999975
No 101
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=99.79 E-value=1.8e-18 Score=197.78 Aligned_cols=218 Identities=19% Similarity=0.198 Sum_probs=160.5
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcc---ccccc-------CCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKIQ-------NIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~---~~~~~-------~~~~~~~~ 484 (837)
+.+|+| .|++.+.+ +.+.+++++|+.|...|.++|||||||.....+ ..... -.++..++
T Consensus 18 ~~~ViK---~GG~~~~~-------~~~~~~~~~i~~l~~~g~~~vlVHGgg~~i~~~~~~~g~~~~~~~G~RvT~~~~l~ 87 (429)
T TIGR01890 18 KTFVVG---LGGELVEG-------GNLGNIVADIALLHSLGVRLVLVHGARPQIERILAARGRTPHYHRGLRVTDEASLE 87 (429)
T ss_pred CEEEEE---EChhhccC-------ccHHHHHHHHHHHHHCCCcEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHH
Confidence 456788 44443322 123589999999999999999999999443322 22221 23677778
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeE-----eehhchh----------------hh--hhccchHHHHHHHhCCCEEEE
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHV-----MSAISIE----------------KF--LESYIPLNAIKYLEEGKVVIF 541 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~-----l~~~~~~----------------~~--~~~~~~~~i~~ll~~g~VPVv 541 (837)
...++ ++..+..|++.|... +++++ +++.+.+ .. +..++.+.+..+++.|+|||+
T Consensus 88 ~~~~~-~g~vn~~l~~~l~~~-~~~~~~~~~~l~~~dg~~~~a~~~~~~~~~~~g~~G~v~~v~~~~l~~ll~~g~ipvi 165 (429)
T TIGR01890 88 QAQQA-AGTLRLAIEARLSMS-LSNTPMAGSRLPVVSGNFVTARPIGVIEGVDYEHTGVIRKIDTEGIRRQLDAGSIVLL 165 (429)
T ss_pred HHHHH-hChHHHHHHHHHHhc-CCcccccccCceEccceEEEEEECCCCcCccccccceEEEEcHHHHHHHHHCCCeEEE
Confidence 88876 777778888888776 44333 3443321 11 345688999999999999999
Q ss_pred eC-CC---CC-CCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hcc-ccchHH
Q psy13351 542 AG-GI---GN-PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKL-EIMDST 610 (837)
Q Consensus 542 ~G-~~---G~-~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~-~v~~~~ 610 (837)
++ +. |. -++++|++|+.||.+|+|++|+|+|||||||++ ++++|++++.+++.+ .|+ |..++.
T Consensus 166 ~pi~~~~~g~~~nvnaD~~A~~lA~al~a~kli~ltdv~Gv~~~------~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~ 239 (429)
T TIGR01890 166 SPLGHSPTGETFNLDMEDVATSVAISLKADKLIYFTLSPGISDP------DGTLAAELSPQEVESLAERLGSETTRRLLS 239 (429)
T ss_pred CCcccCCCCCEEEeCHHHHHHHHHHHcCCCEEEEEeCCCcccCC------CCCCcccCCHHHHHHHHHhccCCCcHHHHH
Confidence 87 22 21 257799999999999999999999999999964 256889998766644 244 589999
Q ss_pred HHHHHHhCCC-CEEEEEccCcchHHHHH-cCCccceEEEEee
Q psy13351 611 AFSFCRDQKL-PIRVFSIIKSGALKRVI-EGKNEGTLVYEIY 650 (837)
Q Consensus 611 Aa~~a~~~gi-~v~I~ng~~~~~i~~al-~Ge~~GT~I~~~~ 650 (837)
++..|.+.|+ +++|++|..|+.+...| ..+..||+|+.+.
T Consensus 240 ~a~~a~~~gv~~v~i~~g~~~~~l~~el~~~~g~GT~i~~d~ 281 (429)
T TIGR01890 240 AAVKACRGGVHRSHIVSYAEDGSLLQELFTRDGIGTSISKEA 281 (429)
T ss_pred HHHHHHHcCCCeEEEECCCCCcHHHHHHhcCCCCcceEeccc
Confidence 9999999996 68999999999988766 4566899999863
No 102
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=99.79 E-value=1.3e-18 Score=184.43 Aligned_cols=195 Identities=11% Similarity=0.074 Sum_probs=149.4
Q ss_pred ccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehh
Q psy13351 436 INSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI 515 (837)
Q Consensus 436 i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~ 515 (837)
.+++.++.+++.|+.|...|.++|||||||........ . .......++.. ..+..|+..|+.+|++++++++.
T Consensus 48 ~~~~~~~~l~~dla~L~~lGl~~VlVHGggp~i~~~l~-~-----~~~~~~~~v~~-~~n~~Lv~~L~~~G~~A~gl~g~ 120 (271)
T cd04236 48 RSLEMVQSLSFGLAFLQRMDMKLLVVMGLSAPDGTNMS-D-----LELQAARSRLV-KDCKTLVEALQANSAAAHPLFSG 120 (271)
T ss_pred cCchhHHHHHHHHHHHHHCCCeEEEEeCCChHHhhhhc-C-----CcchheehhHH-HHHHHHHHHHHhCCCCeeeecCc
Confidence 35678899999999999999999999999965443222 1 11222333333 45677888999999999999886
Q ss_pred ch----------h--hhhhccchHHHHHHHhCCCEEEEeCC----CCC-CCCcchHHHHHHHHHcCCcEEEEeeccCccc
Q psy13351 516 SI----------E--KFLESYIPLNAIKYLEEGKVVIFAGG----IGN-PFFTTDTTAALRAAEIKAEIILKATKVDGIY 578 (837)
Q Consensus 516 ~~----------~--~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~-~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy 578 (837)
.. + ..+..++.+.+..+++.|.|||+++. .|. -++++|++|+.+|.+|+|++|+|+|||+|||
T Consensus 121 ~~~i~a~~~~d~g~vG~V~~Vd~~~I~~lL~~g~IPVisplg~~~~G~~~NiNaD~~A~~lA~aL~A~KLIfltd~~GV~ 200 (271)
T cd04236 121 ESVLQAEEPEPGASKGPSVSVDTELLQWCLGSGHIPLVCPIGETSSGRSVSLDSSEVTTAIAKALQPIKVIFLNRSGGLR 200 (271)
T ss_pred cceEEEEEcccCCccceEEEECHHHHHHHHhCCCeEEECCceECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcceE
Confidence 31 0 01355789999999999999999981 111 1467999999999999999999999999999
Q ss_pred cCCCCCCCCceeccccCH-HHHHH-------hccc---cchHHHHHHHHhCCCCEEEEEccCcchH-HHHHcCCccceEE
Q psy13351 579 NSDPNKCLSAIIYKKITF-DEVIS-------KKLE---IMDSTAFSFCRDQKLPIRVFSIIKSGAL-KRVIEGKNEGTLV 646 (837)
Q Consensus 579 ~~dP~~~~~a~~I~~is~-~e~~~-------~G~~---v~~~~Aa~~a~~~gi~v~I~ng~~~~~i-~~al~Ge~~GT~I 646 (837)
+++ .++|++++. +|+.+ .||| +.++.++.-+...|++|+|++ |+.+ .+++.....||+|
T Consensus 201 ~~~------g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll~elft~~g~GT~~ 271 (271)
T cd04236 201 DQK------HKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLLTELFSHKGSGTLF 271 (271)
T ss_pred CCC------CCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHHHHHhccCCCCCcC
Confidence 742 468888884 55543 6888 888889988899999988886 5554 4577777789986
No 103
>PRK09181 aspartate kinase; Validated
Probab=99.78 E-value=1e-17 Score=191.67 Aligned_cols=225 Identities=12% Similarity=0.120 Sum_probs=160.5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHh----CCCEEEEeCCCCCCC--Cc-
Q psy13351 479 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNPF--FT- 551 (837)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~----~g~VPVv~G~~G~~~--~s- 551 (837)
++...|.+...+..+++.+|+.+|...|+++..+++..............+...+. .+.|||++||.|.+. ++
T Consensus 135 ~~~~~D~l~s~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~i~~~l~~~~~~~~v~Vv~GF~~~~~G~itT 214 (475)
T PRK09181 135 LLTVREMLASIGEAHSAFNTALLLQNRGVNARFVDLTGWDDDDPLTLDERIKKAFKDIDVTKELPIVTGYAKCKEGLMRT 214 (475)
T ss_pred ChhHhHHHhhHhHHHHHHHHHHHHHhCCCCeEEeccccccCCcccchHHHHHHHHhhhccCCcEEEecCCcCCCCCCEEe
Confidence 44455555555555689999999999999999866533211111113456666665 478999999875432 22
Q ss_pred -----chHHHHHHHHHcCCcEEEEeeccCccccCCCCCC--CCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 552 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 -----~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~--~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+.+|.+|+||.+.+||||+ ||++||+.. |+|++|++++|+|+.+ +|++++||.|.++|.+++||
T Consensus 215 LGRGGSDyTAailAa~L~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ip 293 (475)
T PRK09181 215 FDRGYSEMTFSRIAVLTGADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP 293 (475)
T ss_pred cCCChHHHHHHHHHHHcCCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCe
Confidence 999999999999999999999997 999999999 6999999999999988 79999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEEEeeehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEeccccc
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLT 701 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~ 701 (837)
++|.|.++|+ ..||+|.++..+. + . .++.- .
T Consensus 294 i~V~nt~~p~---------~~GT~I~~~~~~~----------------------------~----~---~ik~I-----t 324 (475)
T PRK09181 294 LRIKNTFEPE---------HPGTLITKDYVSE----------------------------Q----P---RVEII-----A 324 (475)
T ss_pred EEEecCCCCC---------CCCeEEecCcccc----------------------------c----c---cceeE-----e
Confidence 9999999874 5799997531100 0 0 01110 1
Q ss_pred ccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCcccee-cCCeeEEeCCCC
Q psy13351 702 KLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTI-QGNIIYVSIPPL 757 (837)
Q Consensus 702 ~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~-~~~~i~v~iP~~ 757 (837)
-...++.|++.+..++- .+.....|..++.+.+.++.-+. ....|.+.++.-
T Consensus 325 ~~~~~~~i~i~~~~~~~----~~g~~~~if~~l~~~~i~v~~i~ss~~sis~~v~~~ 377 (475)
T PRK09181 325 GSDKVFALEVFDQDMVG----EDGYDLEILEILTRHKVSYISKATNANTITHYLWGS 377 (475)
T ss_pred ccCCEEEEEEcCCCCCC----cchHHHHHHHHHHHcCCeEEEEEecCcEEEEEEcCC
Confidence 12245666555443222 35566677788887776665443 235777777664
No 104
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=99.78 E-value=2.2e-18 Score=177.07 Aligned_cols=219 Identities=23% Similarity=0.288 Sum_probs=166.1
Q ss_pred hhhhhccCCC---ccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccc--ccCCCcchHHHHHHHHHHHH
Q psy13351 424 LGEALMKGDA---YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNK--IQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 424 ~gs~~~~g~~---~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 494 (837)
+|.++..+++ .....+.++..+++|+.+.++|+++||.||.| ..+.+.... ..+.++.+++.++++..++.
T Consensus 8 GGNAll~~g~~~tae~Q~~~v~~ta~~i~~l~~~g~e~VitHGNGPQVG~l~lq~~aa~~~~~~p~~PLd~~~AmsQG~I 87 (312)
T COG0549 8 GGNALLQRGEPLTAEAQYEAVKITAEQIADLIASGYEVVITHGNGPQVGLLLLQNEAADSEKGVPAYPLDVLVAMSQGMI 87 (312)
T ss_pred cchhhcCCCCCCCHHHHHHHHHHHHHHHHHHHhcCCeEEEEcCCCchHHHHHHHhhhhccccCCCCccHHHHhHhhhhHH
Confidence 5566665433 33456678899999999999999999999986 444432221 23467789999999999999
Q ss_pred HHHHHHH----HHHcCCc---eeEee-----hhch---------h----------------------------hh-----
Q psy13351 495 SLALFDI----LNKSGII---SHVMS-----AISI---------E----------------------------KF----- 520 (837)
Q Consensus 495 ~~ll~~~----L~~~gi~---a~~l~-----~~~~---------~----------------------------~~----- 520 (837)
+++|+.. |...|+. +..++ ..|- + .+
T Consensus 88 Gy~l~qal~n~l~~~~~~~~v~tvvTqv~VD~nDPAF~nPtKpIGpfY~~eea~~l~~~~gw~~keD~~rG~RRVVpSP~ 167 (312)
T COG0549 88 GYMLQQALRNELPRRGLEKPVVTVVTQVEVDANDPAFLNPTKPIGPFYSEEEAEELAKEYGWVFKEDAGRGYRRVVPSPK 167 (312)
T ss_pred HHHHHHHHHHHHhhcCCCCceeEEEEEEEEcCCCccccCCCCCCCCCcCHHHHHHHHhhcCcEEEecCCCCeeEecCCCC
Confidence 9998877 4555642 11111 1110 0 00
Q ss_pred -hhccchHHHHHHHhCCCEEEEeCCCCCCCC-------------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCC
Q psy13351 521 -LESYIPLNAIKYLEEGKVVIFAGGIGNPFF-------------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCL 586 (837)
Q Consensus 521 -~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~-------------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~ 586 (837)
.+-+..+.|..++++|.++|.+|+.|.|.+ .-|..|+.||..++||.|+|+||||+||-...+ |
T Consensus 168 P~~IvE~~~Ik~L~~~g~vVI~~GGGGIPVv~~~~~~~GVeAVIDKDlasalLA~~i~AD~liILTdVd~Vy~n~gk--p 245 (312)
T COG0549 168 PVRIVEAEAIKALLESGHVVIAAGGGGIPVVEEGAGLQGVEAVIDKDLASALLAEQIDADLLIILTDVDAVYVNFGK--P 245 (312)
T ss_pred CccchhHHHHHHHHhCCCEEEEeCCCCcceEecCCCcceeeEEEccHHHHHHHHHHhcCCEEEEEeccchheecCCC--c
Confidence 112356789999999999999998887742 279999999999999999999999999999876 7
Q ss_pred CceeccccCHHHHHH--------hccccchHHH-HHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 587 SAIIYKKITFDEVIS--------KKLEIMDSTA-FSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 587 ~a~~I~~is~~e~~~--------~G~~v~~~~A-a~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
+.+.|++++.+|+.+ -|+|.+|++| +.++++.|.+.+|.+ .+++.++|.|+ .||.|++
T Consensus 246 ~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~l~g~-~GT~I~~ 312 (312)
T COG0549 246 NQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAALEGK-AGTVIVP 312 (312)
T ss_pred cchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHHhccC-CCcEecC
Confidence 889999999999765 5889999975 578888888888875 45688899997 7999964
No 105
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.77 E-value=2.3e-18 Score=211.95 Aligned_cols=152 Identities=20% Similarity=0.268 Sum_probs=124.2
Q ss_pred HHHHHHHHHHHHHHHHcCCceeEeehhchhhhhh-------------c----cchHHHHHHHhCC-CEEEEeCCCCCC--
Q psy13351 489 LATIINSLALFDILNKSGIISHVMSAISIEKFLE-------------S----YIPLNAIKYLEEG-KVVIFAGGIGNP-- 548 (837)
Q Consensus 489 ~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~-------------~----~~~~~i~~ll~~g-~VPVv~G~~G~~-- 548 (837)
.+..+++.+|+.+|++.|+++..+++.++..... . .+...+..++..+ .|||++||.|..
T Consensus 125 ~GE~lSa~lla~~L~~~Gi~a~~ld~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~Vv~Gf~g~~~~ 204 (861)
T PRK08961 125 QGELLSTTLGAAYLEASGLDMGWLDAREWLTALPQPNQSEWSQYLSVSCQWQSDPALRERFAAQPAQVLITQGFIARNAD 204 (861)
T ss_pred ehHHHHHHHHHHHHHhCCCCcEEEcHHHhEeecCccccccccccccceecHhhHHHHHHHHhccCCeEEEeCCcceeCCC
Confidence 3344578899999999999999999876521100 0 1223444555554 599999998743
Q ss_pred C-Cc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhC
Q psy13351 549 F-FT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQ 618 (837)
Q Consensus 549 ~-~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~ 618 (837)
+ ++ +|++|+.+|..|+||.+++|||||||||+||+.+|+|++|++++++|+.+ .|++++|+.|+++|.++
T Consensus 205 g~~ttLgrggsD~~A~~iA~~l~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~ 284 (861)
T PRK08961 205 GGTALLGRGGSDTSAAYFAAKLGASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDA 284 (861)
T ss_pred CCEEEEeCCchHHHHHHHHHHcCCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHC
Confidence 2 11 99999999999999999999999999999999999999999999999876 79999999999999999
Q ss_pred CCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 619 KLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 619 gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
|||++|.|+.+|+ ..||+|.++
T Consensus 285 ~i~i~v~~~~~~~---------~~gT~I~~~ 306 (861)
T PRK08961 285 GIPMAILDTERPD---------LSGTSIDGD 306 (861)
T ss_pred CCCEEEEeCCCCC---------CCccEEeCC
Confidence 9999999998873 469999754
No 106
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.75 E-value=1.8e-17 Score=176.36 Aligned_cols=159 Identities=13% Similarity=0.120 Sum_probs=127.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHh----CCCEEEEeCCCCCC-C-Cc-
Q psy13351 479 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLE----EGKVVIFAGGIGNP-F-FT- 551 (837)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~----~g~VPVv~G~~G~~-~-~s- 551 (837)
.+...+.+...+...++.+++.+|+..|+++..++...............+.+.+. .+.|||++||.+.. + ++
T Consensus 129 ~~~~rd~l~S~GE~~Sa~l~a~~L~~~Gi~A~~vD~~~~~~~~~~t~~~~i~~~~~~~~~~~~v~IvtGF~~~~~G~itT 208 (304)
T cd04248 129 LLAARELLASLGEAHSAFNTALLLQNRGVNARFVDLSGWRDSGDMTLDERISEAFRDIDPRDELPIVTGYAKCAEGLMRE 208 (304)
T ss_pred CHHHHHHHhhhCHHHHHHHHHHHHHHCCCCeEEECcccccccCCCCcHHHHHHHHHhhccCCcEEEeCCccCCCCCCEEE
Confidence 45566666666666689999999999999998855443221101112344444444 57899999986533 1 22
Q ss_pred -----chHHHHHHHHHcCCcEEEEeeccCccccCCCCCC--CCceeccccCHHHHHH---hccccchHHHHHHHHhCCCC
Q psy13351 552 -----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKC--LSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 -----~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~--~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|+.|+.+|.+|+|+.+.|||||+ ||++||+.+ |+|+.|++++|+|+.+ .|++++||.|+++|.+++||
T Consensus 209 LGRGGSDyTAs~iAa~l~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IP 287 (304)
T cd04248 209 FDRGYSEMTFSRIAVLTGASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIP 287 (304)
T ss_pred cCCCcHHHHHHHHHHHcCCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCe
Confidence 999999999999999999999996 999999999 6899999999999988 79999999999999999999
Q ss_pred EEEEEccCcchHHHHHcCCccceEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|.|.++|+ ..||+|+
T Consensus 288 i~Vkntf~P~---------~~GTlIt 304 (304)
T cd04248 288 LRVKNTFEPD---------HPGTLIT 304 (304)
T ss_pred EEEecCCCCC---------CCCceeC
Confidence 9999999884 5799984
No 107
>KOG0456|consensus
Probab=99.68 E-value=5.2e-16 Score=163.96 Aligned_cols=277 Identities=17% Similarity=0.259 Sum_probs=194.1
Q ss_pred CCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 432 DAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 432 ~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
....+++.++..+.+.+.++.+. .....+++..+.|+...++..++.++++++|+..|.++..
T Consensus 158 ~e~~~d~~v~~~~le~leq~Lk~-----------------i~mm~Elt~RTrD~lvs~GE~lS~rf~aA~lnd~G~kar~ 220 (559)
T KOG0456|consen 158 HELIVDPAVIAKLLEGLEQLLKG-----------------IAMMKELTLRTRDYLVSFGECLSTRFFAAYLNDIGHKARQ 220 (559)
T ss_pred HHhccCHHHHHHHHHHHHHHHHH-----------------HHHHHhcchhhhhHhhhhhhHHHHHHHHHHHHhcCcccee
Confidence 44456677777777776665431 1122355778889988888889999999999999999988
Q ss_pred eehhchhhhhh----------ccchHHHHHH----HhCCCEEEEeCCCCC--CC--Cc------chHHHHHHHHHcCCcE
Q psy13351 512 MSAISIEKFLE----------SYIPLNAIKY----LEEGKVVIFAGGIGN--PF--FT------TDTTAALRAAEIKAEI 567 (837)
Q Consensus 512 l~~~~~~~~~~----------~~~~~~i~~l----l~~g~VPVv~G~~G~--~~--~s------~D~lAa~lA~~L~Ad~ 567 (837)
+..+.++.... .+-+.....+ ...+.|||+.||.|. |. ++ +|..|+.+|.+|++|.
T Consensus 221 ~D~~~I~~~~~d~~t~~d~~~a~~~av~k~~~~~~aken~VPVvTGf~Gk~~~tg~lt~lGRG~sDl~At~i~~al~~~E 300 (559)
T KOG0456|consen 221 YDAFEIGFITTDDFTNDDILEATYPAVSKLLSGDWAKENAVPVVTGFLGKGWPTGALTTLGRGGSDLTATTIGKALGLDE 300 (559)
T ss_pred echhheeccccccccchhHHHHHHHHHHHhcccccccCCccceEeeccccCccccceecccCCchhhHHHHHHHHcCchh
Confidence 87766533211 1111111111 235799999998773 21 22 8999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccce
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 644 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT 644 (837)
+-+|.|||||+|+||++.|.|++++.++++|+.+ +|..++||...+.+.+..||+.|-|..+|- .+||
T Consensus 301 iQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~---------~~GT 371 (559)
T KOG0456|consen 301 IQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPT---------APGT 371 (559)
T ss_pred hhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCC---------CCce
Confidence 9999999999999999999999999999999988 899999999999999999999999999883 5799
Q ss_pred EEEEeeehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCc
Q psy13351 645 LVYEIYIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEK 724 (837)
Q Consensus 645 ~I~~~~~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~ 724 (837)
+|.|+..|. ..|-.+.-+=++|.+ +.+-+.|++.=.
T Consensus 372 vI~~d~~m~--------------------------k~~~TsI~lK~nv~m--------------ldI~Str~l~q~---- 407 (559)
T KOG0456|consen 372 VITPDRDMS--------------------------KAGLTSIVLKRNVTM--------------LDIASTRMLGQH---- 407 (559)
T ss_pred Eeccchhhh--------------------------hccceEEEEeccEEE--------------EEecccchhhhh----
Confidence 999863211 112222222233332 111122222211
Q ss_pred ccHHHHHHHHHhcCCCcccee-cCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13351 725 EMSSIIKKAINEANLGLNPTI-QGNIIYVSIPPLTKERREEIVKLIKNITEETKI 778 (837)
Q Consensus 725 ~~~~~I~kaI~~s~l~~~p~~-~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~ 778 (837)
..+..|..-+.+-++-+.... ..-.|...+|+..-..|+-+.+...+..|+-+.
T Consensus 408 GFLAkvFti~ek~~isVDvvaTSEV~iSltL~~~~~~sreliq~~l~~a~eeL~k 462 (559)
T KOG0456|consen 408 GFLAKVFTIFEKLGISVDVVATSEVSISLTLDPSKLDSRELIQGELDQAVEELEK 462 (559)
T ss_pred hHHHHHHHHHHHhCcEEEEEEeeeEEEEEecChhhhhhHHHHHhhHHHHHHHHHH
Confidence 234455443443344444443 445899999999999999888888877777543
No 108
>PRK04531 acetylglutamate kinase; Provisional
Probab=99.66 E-value=7.7e-16 Score=172.30 Aligned_cols=191 Identities=17% Similarity=0.172 Sum_probs=136.1
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc---cccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~~----~---~~~~~~~ 484 (837)
+.+|+| .|++.+.+ .++.++++|+.|...|.++|||||||....... +... + .++.+++
T Consensus 37 ~~~VIK---iGG~~l~~--------~~~~l~~dla~L~~~G~~~VlVHGggpqI~~~l~~~gie~~~v~G~RVTd~~tl~ 105 (398)
T PRK04531 37 RFAVIK---VGGAVLRD--------DLEALASSLSFLQEVGLTPIVVHGAGPQLDAELDAAGIEKETVNGLRVTSPEALA 105 (398)
T ss_pred cEEEEE---EChHHhhc--------CHHHHHHHHHHHHHCCCcEEEEECCCHHHHHHHHHcCCCcEEECCEecCCHHHHH
Confidence 456778 44444322 258899999999999999999999994433222 2211 1 3556666
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHH
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALR 559 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~l 559 (837)
...++.. ..+.-|+.. +..+++.|.|||+++. .|.. ++++|.+|+.+
T Consensus 106 vv~~~l~-~vn~~lv~~---------------------------I~~~L~~g~IPVlsplg~~~~G~~~NvnaD~vA~~L 157 (398)
T PRK04531 106 IVRKVFQ-RSNLDLVEA---------------------------VESSLRAGSIPVIASLGETPSGQILNINADVAANEL 157 (398)
T ss_pred HHHHHHH-HHHHHHHHH---------------------------HHHHHHCCCEEEEeCcEECCCCcEEEECHHHHHHHH
Confidence 6666554 222222221 6778999999999772 1222 46799999999
Q ss_pred HHHcCCcEEEEeeccCccccCCCCCCCCceeccccCH-HHHHH-------hccccchHHHHHHHHhCCCCEEEEEccCcc
Q psy13351 560 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF-DEVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG 631 (837)
Q Consensus 560 A~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~-~e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~ 631 (837)
|..|+|++|+++|||+|||+.+ +++|+.++. ++... .|+|..++.++..|.+...++.++++..|+
T Consensus 158 A~aL~a~KLIfltdv~GV~d~~------g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~ 231 (398)
T PRK04531 158 VSALQPYKIIFLTGTGGLLDAD------GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPS 231 (398)
T ss_pred HHHcCCCEEEEEECCCCccCCC------CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCC
Confidence 9999999999999999999743 567888875 33322 589999999988887654467777888899
Q ss_pred hHHHHHcCC-ccceEEEEee
Q psy13351 632 ALKRVIEGK-NEGTLVYEIY 650 (837)
Q Consensus 632 ~i~~al~Ge-~~GT~I~~~~ 650 (837)
++...|.++ ..||+|...+
T Consensus 232 ~Ll~eLft~~G~GT~I~~g~ 251 (398)
T PRK04531 232 DLAKELFTHKGSGTLVRRGE 251 (398)
T ss_pred HHHHHHccCCCCCeEEecCC
Confidence 998877655 5799999764
No 109
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.63 E-value=4.1e-15 Score=142.89 Aligned_cols=173 Identities=20% Similarity=0.211 Sum_probs=134.4
Q ss_pred CceEEEEeCcchhhh--cccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHH
Q psy13351 455 GIELAIVIGGGNICR--GISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKY 532 (837)
Q Consensus 455 G~~vVIVhGGG~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~l 532 (837)
+.++++|.|||.++. .......+++....+++.+.++...+.++++....+....+. .+ +..
T Consensus 26 ~~~i~iVpGGg~FAd~VR~id~~~~lSdsasHwmAI~~Md~~G~~lad~~~~~~~~tv~-ep---------------~~~ 89 (212)
T COG2054 26 QRSILIVPGGGIFADLVRKIDEEFGLSDSASHWMAITAMDQYGFYLADLASRFVTDTVT-EP---------------EDG 89 (212)
T ss_pred cceEEEecCchHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHhhhcccccceee-ch---------------hhc
Confidence 347999999995543 344455678889999999999998999888776554422110 11 112
Q ss_pred HhCCCEEEEeCC----CC-----CCCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHHhc
Q psy13351 533 LEEGKVVIFAGG----IG-----NPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 603 (837)
Q Consensus 533 l~~g~VPVv~G~----~G-----~~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~~G 603 (837)
...+..||+-+. .- ...+|+|++|.++|.+++|..+++.|||||||+.+|+ ++++++|+..++.. |
T Consensus 90 i~~~~~aVLLPyrlLr~~DplpHSW~VTSDsis~~Ia~~~~~~~vv~aTDVdGI~~~~~~----~kLv~eI~A~dl~~-~ 164 (212)
T COG2054 90 IKPDAKAVLLPYRLLRKTDPLPHSWEVTSDSISVWIAAKAGATEVVKATDVDGIYEEDPK----GKLVREIRASDLKT-G 164 (212)
T ss_pred cCcccceEeeehHhhhcCCCCCcceeecccHHHHHHHHHcCCcEEEEEecCCcccccCCc----chhhhhhhHhhccc-C
Confidence 333455555431 00 1247799999999999999999999999999998764 48999999998866 7
Q ss_pred cccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCc-cceEEEE
Q psy13351 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKN-EGTLVYE 648 (837)
Q Consensus 604 ~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~-~GT~I~~ 648 (837)
--..|+..-+++.+.++.++++||.+|+++..++.|++ +||+|++
T Consensus 165 ~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T~Ivg 210 (212)
T COG2054 165 ETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGTLIVG 210 (212)
T ss_pred cccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceEEEeC
Confidence 78899999999999999999999999999999999976 5999986
No 110
>PLN02825 amino-acid N-acetyltransferase
Probab=99.57 E-value=7.6e-14 Score=160.16 Aligned_cols=202 Identities=17% Similarity=0.150 Sum_probs=146.9
Q ss_pred chhhhhhhhHHhhhcCceEEEEeCcchhh---hccccccc----C---CCcchHHHHHHHHHHHHHHHHHHH--------
Q psy13351 440 IIKNIISEISEIVSCGIELAIVIGGGNIC---RGISNKIQ----N---IDRSTADYMGMLATIINSLALFDI-------- 501 (837)
Q Consensus 440 ~i~~la~~I~~l~~~G~~vVIVhGGG~~~---~~~~~~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~-------- 501 (837)
.+.+++.+|+.|...|.++|||||||... ........ + .++.+++.. +.+.+..+..+.+.
T Consensus 33 ~~~~l~~DialL~~lGi~~VlVHGggpqI~~~l~~~gi~~~f~~G~RVTd~~~L~~~-~~~~G~v~~~i~a~Ls~~~~v~ 111 (515)
T PLN02825 33 HLDNILQDISLLHGLGIKFVLVPGTHVQIDKLLAERGREPKYVGAYRITDSAALQAS-MEAAGKIRVMIEAKLSPGPSIP 111 (515)
T ss_pred hHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHcCCCceeeCCcccCCHHHHHHH-HHHHHHHHHHHHHhhccccchh
Confidence 57889999999999999999999999332 22222221 1 266667664 66677766666664
Q ss_pred -HHHcCCce----eEeehhchhhh------------------hhccchHHHHHHHhCCCEEEEeC-C---CCCC-CCcch
Q psy13351 502 -LNKSGIIS----HVMSAISIEKF------------------LESYIPLNAIKYLEEGKVVIFAG-G---IGNP-FFTTD 553 (837)
Q Consensus 502 -L~~~gi~a----~~l~~~~~~~~------------------~~~~~~~~i~~ll~~g~VPVv~G-~---~G~~-~~s~D 553 (837)
|..+|+++ +++++.+.+.+ ++.++.+.|..+|+.|.|||+++ + .|.. ++++|
T Consensus 112 ~l~~~G~~a~~~~~gl~~~~Gn~v~a~~~gv~dgvD~g~vG~V~~Vd~~~i~~~L~~g~Ipvisplg~s~~Ge~~NinaD 191 (515)
T PLN02825 112 NLRRHGDNSRWHEVGVSVASGNFLAAKRRGVVNGVDFGATGEVKKIDVSRIKERLDSNCIVLLSNLGYSSSGEVLNCNTY 191 (515)
T ss_pred HHHhcCCCCccccCceEeccCcEEEEEECCCCcCccccceeeEEEEcHHHHHHHHhCCCeEEECCceECCCCCEEeeCHH
Confidence 48888887 67766654111 45678999999999999999998 2 2222 46799
Q ss_pred HHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hc---------c--------------c--
Q psy13351 554 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KK---------L--------------E-- 605 (837)
Q Consensus 554 ~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G---------~--------------~-- 605 (837)
.+|+.+|.+|+||+|||+|||+ +++.+ .++|++++.+|+.+ .+ . .
T Consensus 192 ~vA~avA~aL~A~KLI~ltd~~-~~~~~------g~li~~l~~~e~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (515)
T PLN02825 192 EVATACALAIGADKLICIVDGP-ILDEN------GRLIRFMTLEEADMLIRKRAKQSEIAANYVKAVGGEDYSYSLGLDS 264 (515)
T ss_pred HHHHHHHHHcCCCeEEEEeCcc-eecCC------CCCcCcCCHHHHHHHHHhhhhcchhhhhhhhhcccccccccccccc
Confidence 9999999999999999999977 55432 45777777665543 11 0 0
Q ss_pred ------------------------------c-------------------------chHHHHHHHHhCCCC-EEEEEccC
Q psy13351 606 ------------------------------I-------------------------MDSTAFSFCRDQKLP-IRVFSIIK 629 (837)
Q Consensus 606 ------------------------------v-------------------------~~~~Aa~~a~~~gi~-v~I~ng~~ 629 (837)
. .++.+|-.|.+.|++ ++++++..
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~a~~~gv~r~hl~~~~~ 344 (515)
T PLN02825 265 VNTTPFNNNGRGFWGSGSATDSFQNGVGFDNGNGLSGEQGFAIGGEERLSRLNGYLSELAAAAFVCRGGVQRVHLLDGTI 344 (515)
T ss_pred ccccccccccccccccccccccccccccccCcccccccccccccchhhchhhhhHHHHHHHHHHHHHcCCCeEEeccCCC
Confidence 0 014567777788995 99999999
Q ss_pred cchHH-HHHcCCccceEEEEe
Q psy13351 630 SGALK-RVIEGKNEGTLVYEI 649 (837)
Q Consensus 630 ~~~i~-~al~Ge~~GT~I~~~ 649 (837)
.+.+. .++.-+.+||.|..+
T Consensus 345 ~gall~elft~dg~gt~i~~~ 365 (515)
T PLN02825 345 EGVLLLELFTRDGMGTMIASD 365 (515)
T ss_pred CchHHHHhhccCCceeEeccC
Confidence 88876 567778899999987
No 111
>PF00889 EF_TS: Elongation factor TS; InterPro: IPR014039 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome [, , ]. EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. Elongation factor EF1B (also known as EF-Ts or EF-1beta/gamma/delta) is a nucleotide exchange factor that is required to regenerate EF1A from its inactive form (EF1A-GDP) to its active form (EF1A-GTP). EF1A is then ready to interact with a new aminoacyl-tRNA to begin the cycle again. EF1B is more complex in eukaryotes than in bacteria, and can consist of three subunits: EF1B-alpha (or EF-1beta), EF1B-gamma (or EF-1gamma) and EF1B-beta (or EF-1delta) []. This entry represents the C-terminal dimerisation domain found primarily in EF-Tu (EF1A) proteins from bacteria, mitochondria and chloroplasts. More information about these proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0003746 translation elongation factor activity, 0006414 translational elongation, 0005622 intracellular; PDB: 1XB2_B 3AVU_A 3AVW_A 3AGQ_A 3AGP_A 3AVT_A 3AVY_A 3AVX_A 3AVV_A 1TFE_A ....
Probab=99.38 E-value=5.9e-13 Score=137.72 Aligned_cols=90 Identities=28% Similarity=0.399 Sum_probs=73.2
Q ss_pred hhccccc-CCCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh-----------------
Q psy13351 261 NISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------------- 320 (837)
Q Consensus 261 kk~~r~~-~eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~----------------- 320 (837)
+++.++. .+|.+++|+| ||+|+||+++++++.. ++++++|||||+|++|.+++.
T Consensus 83 ~r~~~~~~~~~~v~~Y~H~~gkig~lV~~~~~~~~~------~~~ak~iAmhIaA~~P~~l~~~~vp~~~~~~E~~i~~~ 156 (221)
T PF00889_consen 83 RRAARISAPNGFVGSYVHNNGKIGVLVALEGDNDSA------KEFAKDIAMHIAAMNPKYLSEEDVPAEVLEKEKEIAKE 156 (221)
T ss_dssp EEEEEEE-TTSEEEEEEET-TTEEEEEEEET-SHGG------HHHHHHHHHHHHHH--SBSSCTGS-CCHHHHHHHHHHH
T ss_pred eEEEEEeccCCEEEEEECCCCcEEEEEEEEcCcchH------HHHHHHHHHHHhhhCccccCcccCCHHHHHHHHHHHHH
Confidence 4444444 4899999999 7999999999998864 689999999999999976543
Q ss_pred -----------------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCC
Q psy13351 321 -----------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN 360 (837)
Q Consensus 321 -----------------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~ 360 (837)
++|+|++|+++||+|++++..+. |+|.+|+||++||
T Consensus 157 ~~~~~gKpe~i~ekIv~Gkl~k~~~e~~Ll~Q~fv~D~~~tV~~~l~~~~~~----i~v~~F~R~~vGE 221 (221)
T PF00889_consen 157 QAKAEGKPENIIEKIVEGKLKKFYKENCLLEQPFVKDPKKTVKQYLKEVGKE----IKVVGFVRFEVGE 221 (221)
T ss_dssp HHHTTTS-HHHHHHHHHHHHHHHHHHCBTCCSBETTETTSBHHHHHHCTTHH-----EEEEEEEEETTT
T ss_pred HhhccCCcHHHHHHHhhhhHhheehheeecCCCccCCCCccHHHHHHhcCCC----cEEEEEEEEecCC
Confidence 78999999999999998876555 8999999999986
No 112
>COG0264 Tsf Translation elongation factor Ts [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=1.4e-12 Score=136.07 Aligned_cols=82 Identities=28% Similarity=0.411 Sum_probs=72.9
Q ss_pred CCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh--------------------------
Q psy13351 269 DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ-------------------------- 320 (837)
Q Consensus 269 eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~-------------------------- 320 (837)
+|.+++|+| +++||||++++. + ...++|++|||||||++|.+++.
T Consensus 151 ~~~v~~Y~H~~griGVlv~~~~~-~------~~~~~ak~iAMHiAA~~P~~ls~~dV~~e~v~~Er~i~~~~~~~~gKP~ 223 (296)
T COG0264 151 DGVVGSYLHGNGRIGVLVALKGG-A------ADEELAKDIAMHIAAMNPQYLSREDVPAEVVEKEREIFLAQLKAEGKPE 223 (296)
T ss_pred cccEEEEEeCCCcEEEEEEEecc-c------hHHHHHHHHHHHHHhcCCccCChhhCCHHHHHHHHHHHHHHHHhcCChH
Confidence 478999999 689999999997 3 35689999999999999987654
Q ss_pred --------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 321 --------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 321 --------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
|+|+|++|+++||++++++. ++++.+|+||++|+||.
T Consensus 224 ~i~eKiVeGr~~Kf~~E~~Ll~Q~fV~d~~~TV~~~lke~------~~~v~~FvR~evGegie 280 (296)
T COG0264 224 NIVEKIVEGRMNKFLAEVCLLEQPFVKDPKKTVEQLLKEA------NAKVTEFVRFEVGEGIE 280 (296)
T ss_pred HHHHHHHhHHHHHHHHHHhhccCceecCcchhHHHHHHhc------CceeeeeeeeeccCCce
Confidence 78999999999999999876 78999999999999984
No 113
>TIGR00116 tsf translation elongation factor Ts. This protein is found in Bacteria, mitochondria, and chloroplasts.
Probab=99.34 E-value=2.3e-12 Score=137.24 Aligned_cols=88 Identities=24% Similarity=0.346 Sum_probs=74.0
Q ss_pred hhcccccC-CCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh-----------------
Q psy13351 261 NISNRNAK-DGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ----------------- 320 (837)
Q Consensus 261 kk~~r~~~-eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~----------------- 320 (837)
++..++.. +|.+++|+| |++||||++++++|. +|+++|||||||++|.+++.
T Consensus 138 rR~~~~~~~~~~v~~Y~H~~gkigvlv~~~~~~~~--------~~ak~iAmhIaA~~P~~l~~~~vp~~vie~Erei~~~ 209 (290)
T TIGR00116 138 RRVAVLEGDSNVIGSYLHAGARIGVLVALKGKADE--------ELAKHIAMHVAASKPQFIDPDDVSAEVVKKERQIQTD 209 (290)
T ss_pred EEEEEEecCCCcEEEEEcCCCcEEEEEEEecCchH--------HHHHHHHHHHHhcCCccCchhhCCHHHHHHHHHHHHH
Confidence 34444443 379999999 799999999997662 58999999999999986544
Q ss_pred -----------------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeE
Q psy13351 321 -----------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 362 (837)
Q Consensus 321 -----------------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i 362 (837)
|+|+|++|+++||.|++++ .+++|.+|+||++|+|+
T Consensus 210 ~~~~~gKP~~i~eKIv~Grl~Kf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~~~v~~F~R~~vGegi 274 (290)
T TIGR00116 210 QAELSGKPKEIAEKMVEGRMKKFLAEISLLGQKFVMDPSKTVGQFLKE------KNAKVTEFIRFEVGEGI 274 (290)
T ss_pred HHHhcCCcHHHHHHHhhhHHHHHhhhceeeecccccCCccCHHHHHHH------cCCEEEEEEEEEecCCc
Confidence 7899999999999999986 35899999999999985
No 114
>PRK09377 tsf elongation factor Ts; Provisional
Probab=99.29 E-value=8.3e-12 Score=133.05 Aligned_cols=155 Identities=25% Similarity=0.293 Sum_probs=101.4
Q ss_pred EEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 175 IIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 175 ~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.-+++.-||.+++|. ++..+..|.-.+. .+++.... ....+..++-. .+..+..++..+.-+
T Consensus 70 ~~~~vElncETDFVA-------rne~F~~l~~~i~-~~~l~~~~---------~~~e~ll~~~~-~g~tv~d~i~~~~~~ 131 (290)
T PRK09377 70 KGVLVEVNSETDFVA-------KNEDFQALANEVA-EAALAAKP---------ADVEALLALKL-DGGTVEEARTELIAK 131 (290)
T ss_pred EEEEEEEecCCcccc-------CChHHHHHHHHHH-HHHHhcCC---------CCHHHHHhccc-cCCcHHHHHHHHHHH
Confidence 457777888777663 4444555544333 33333211 12221111111 233555555444433
Q ss_pred hh-hhhhhhccccc-CCCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh----------
Q psy13351 255 LG-KKILNISNRNA-KDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ---------- 320 (837)
Q Consensus 255 g~-~~a~kk~~r~~-~eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~---------- 320 (837)
=. .-.-+|..++. ++|.|+.|+| |++||||+++++++ +|+++|||||+|++|.+++.
T Consensus 132 iGEnI~l~R~~~~~~~~~~i~~Y~H~~gkigvlV~~~~~~~---------~~ak~iAMhIaA~~P~~l~~~~vp~~~i~~ 202 (290)
T PRK09377 132 IGENISLRRFARLEKDGGVVGSYLHGGGRIGVLVALEGGDE---------ELAKDIAMHIAAMNPEYLSREDVPAEVVEK 202 (290)
T ss_pred hcCceEEEEEEEEeecCCEEEEEEcCCCcEEEEEEEccCcH---------HHHHHHHHHHHhcCCccCChhhCCHHHHHH
Confidence 11 11123444443 4789999999 79999999998642 58999999999999976543
Q ss_pred ------------------------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeE
Q psy13351 321 ------------------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNL 362 (837)
Q Consensus 321 ------------------------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i 362 (837)
|+|+|++|++.||+|++++ .+++|.+|+||++||++
T Consensus 203 E~~i~~~~~~~~gKP~~i~eKIv~Grl~Kf~~e~~Ll~Q~fi~D~~~tV~~~l~~------~~i~v~~F~R~evGe~~ 274 (290)
T PRK09377 203 EREIAKEQAKEEGKPEEIVEKIVEGRLNKFLKEVVLLEQPFVKDPKKTVGQLLKE------AGAKVVGFVRFEVGEGI 274 (290)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHhHHHHHHhhhceeccCcccCCCCcCHHHHHHH------cCCEEEEEEEEEecCcc
Confidence 7899999999999999986 36899999999999975
No 115
>CHL00098 tsf elongation factor Ts
Probab=99.17 E-value=2.4e-11 Score=122.76 Aligned_cols=82 Identities=30% Similarity=0.433 Sum_probs=66.6
Q ss_pred EEEEeeCCeEEEEeeC-CeEEEEEEecCCCh---------hHHHHHHhhhhcc-CccccCcCcCchHHHHHHHHHHHHHH
Q psy13351 353 FKLFKTNNNLISYLHD-NKIGVIVEYNGDNE---------SAVKDVAMHIAAM-KPIALSSDQIPKKIIEKEYSLAVLKA 421 (837)
Q Consensus 353 f~~~~~g~~i~~Y~H~-~~~~~~v~~~~~~~---------~~~~~iamhi~a~-~p~~l~~~~vp~~~~~~ek~~~v~k~ 421 (837)
..|...++.+++|+|. +++||||++++..+ ++|++|||||||| +|.||++++||++++++|++++..++
T Consensus 49 ~~r~~~eG~V~~yiH~~gk~gvlVeln~ETDfVArn~~F~~la~~IAmhiaA~p~p~~l~~~~vp~~~i~~E~~i~~~~~ 128 (200)
T CHL00098 49 STRITTEGLIESYIHTGGKLGVLVEINCETDFVARREEFQKLAKNIAMQIAACPNVKYVSLEDIPEEIINLEKKIESEKD 128 (200)
T ss_pred hccccccCeEEEEEecCCCEEEEEEEecCcccccccHHHHHHHHHHHHHHHcCCCCeEecHHHCCHHHHHHHHHHHHHHH
Confidence 3454445679999996 69999999987532 5789999999999 79999999999999999999988886
Q ss_pred hhhhhhhccCCCccccccc
Q psy13351 422 QQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 422 ~~~gs~~~~g~~~~i~~~~ 440 (837)
.. .|+|..+-+++
T Consensus 129 ~~------~gKp~~i~eki 141 (200)
T CHL00098 129 DL------QNKPEEIKEKI 141 (200)
T ss_pred Hh------cCCcHHHHHHH
Confidence 33 37887665554
No 116
>PRK12332 tsf elongation factor Ts; Reviewed
Probab=99.07 E-value=1.6e-10 Score=116.81 Aligned_cols=82 Identities=35% Similarity=0.509 Sum_probs=65.5
Q ss_pred EEEEeeCCeEEEEeeC-CeEEEEEEecCC------Ch---hHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHh
Q psy13351 353 FKLFKTNNNLISYLHD-NKIGVIVEYNGD------NE---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQ 422 (837)
Q Consensus 353 f~~~~~g~~i~~Y~H~-~~~~~~v~~~~~------~~---~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~ 422 (837)
.-|....+-+++|+|. |+.|+||++... ++ .+|++||||||||+|.||++++||++++++|++++..++.
T Consensus 52 ~~r~~~eG~i~~~i~~~~~~~~lve~n~ETDFVa~n~~F~~lak~iamhIaA~~P~~l~~~~v~~~~i~~E~~i~~~~~~ 131 (198)
T PRK12332 52 AGRVAAEGLVGSYIHTGGRIGVLVELNCETDFVARTEEFKELAKDIAMQIAAANPEYVSREDVPAEVIEKEKEIYRAQAL 131 (198)
T ss_pred ccccccCceEEEEEecCCCEEEEEEEeccCCccccCHHHHHHHHHHHHHHHhhCCccCChhhCCHHHHHHHHHHHHHHHH
Confidence 4455555669999996 799999987654 33 4799999999999999999999999999999999888863
Q ss_pred hhhhhhccCCCccccccc
Q psy13351 423 QLGEALMKGDAYNINSSI 440 (837)
Q Consensus 423 ~~gs~~~~g~~~~i~~~~ 440 (837)
. .|+|..+.+++
T Consensus 132 ~------~gKP~~i~eki 143 (198)
T PRK12332 132 N------EGKPENIVEKI 143 (198)
T ss_pred h------cCCcHHHHHHH
Confidence 3 37776555544
No 117
>KOG2436|consensus
Probab=98.00 E-value=1.9e-05 Score=88.23 Aligned_cols=147 Identities=13% Similarity=0.096 Sum_probs=101.0
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCcchhhhc---cccccc----CC---CcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGGGNICRG---ISNKIQ----NI---DRSTADYMGMLATIINSLALFDILNKSG 506 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~---~~~~~~----~~---~~~~~~~~~~~~~~~~~~ll~~~L~~~g 506 (837)
.....+.++..++.+...|..+|||||+|....+ ...... +. ++..+...-....++++.-+...|+++|
T Consensus 107 ~t~~~~sl~s~lafl~h~gl~pIvv~g~~~qin~~l~~~~ie~~y~~~~RvTda~t~q~~~~~~~~E~n~~lv~nL~~~g 186 (520)
T KOG2436|consen 107 STSLLHSLASDLAFLHHVGLRPIVVPGTQPQINRLLAERGIEPEYVDGYRVTDAHTLQAAKESVSLEANLNLVINLSQLG 186 (520)
T ss_pred ccchHHHHHHHHHHHhcCCceEEEecCccHHHHHHHHHcCCCcccccceecccHHHHHHhhhcchhhhhhHHHHHHHHhh
Confidence 5666788889999999999999999999833222 222221 11 3333333333344555555777788888
Q ss_pred CceeEeehhchh--------------------hhhhccchHHHHHHHhCCCEEEEeC----CCCC-CCCcchHHHHHHHH
Q psy13351 507 IISHVMSAISIE--------------------KFLESYIPLNAIKYLEEGKVVIFAG----GIGN-PFFTTDTTAALRAA 561 (837)
Q Consensus 507 i~a~~l~~~~~~--------------------~~~~~~~~~~i~~ll~~g~VPVv~G----~~G~-~~~s~D~lAa~lA~ 561 (837)
-.+++.++.... .-+..++.+.+..+++.|.+|++.. .-|. -++++|+.|..+|.
T Consensus 187 ~~ar~~s~g~~v~~~f~a~~~~v~d~~~y~~~gei~~vd~d~i~~l~~~G~mp~L~sla~TaSGqvlnvNa~~~a~elA~ 266 (520)
T KOG2436|consen 187 TRARPSSSGVRVGNFFPADRNGVLDGEDYGLVGEIKKVDVDRIRHLLDAGSMPLLRSLAATASGQVLNVNADEVAGELAL 266 (520)
T ss_pred ceeccccccccccceeecccccccccceeeeecccceechhhhhhhhhCCCchhehhhcccCccceEEeeHHHHhhHHHh
Confidence 887776654221 0145568899999999999999875 1222 13669999999999
Q ss_pred HcCCcEEEEeeccCccccCCCC
Q psy13351 562 EIKAEIILKATKVDGIYNSDPN 583 (837)
Q Consensus 562 ~L~Ad~liilTDVdGVy~~dP~ 583 (837)
.|+|+.+++++|+.-+...+|+
T Consensus 267 ~L~~~kli~l~d~g~~l~e~ge 288 (520)
T KOG2436|consen 267 ALGPDKLILLMDKGRILKENGE 288 (520)
T ss_pred ccCcceeEEecccccccccCcc
Confidence 9999999999998445555554
No 118
>PF00627 UBA: UBA/TS-N domain; InterPro: IPR000449 UBA domains are a commonly occurring sequence motif of approximately 45 amino acid residues that are found in diverse proteins involved in the ubiquitin/proteasome pathway, DNA excision-repair, and cell signalling via protein kinases []. The human homologue of yeast Rad23A is one example of a nucleotide excision-repair protein that contains both an internal and a C-terminal UBA domain. The solution structure of human Rad23A UBA(2) showed that the domain forms a compact three-helix bundle []. Comparison of the structures of UBA(1) and UBA(2) reveals that both form very similar folds and have a conserved large hydrophobic surface patch which may be a common protein-interacting surface present in diverse UBA domains. Evidence that ubiquitin binds to UBA domains leads to the prediction that the hydrophobic surface patch of UBA domains interacts with the hydrophobic surface on the five-stranded beta-sheet of ubiquitin []. This domain is similar in sequence to the N-terminal domain of translation elongation factor EF1B (or EF-Ts) from bacteria, mitochondria and chloroplasts. More information about EF1B (EF-Ts) proteins can be found at Protein of the Month: Elongation Factors [].; GO: 0005515 protein binding; PDB: 2DAI_A 2OO9_C 2JUJ_A 1WHC_A 1YLA_A 2O25_B 3K9O_A 3K9P_A 3F92_A 3E46_A ....
Probab=97.26 E-value=0.00025 Score=52.02 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=29.2
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
.+++|+.. |++..+|++||..++||++.|++||
T Consensus 5 ~v~~L~~m-Gf~~~~~~~AL~~~~~nve~A~~~L 37 (37)
T PF00627_consen 5 KVQQLMEM-GFSREQAREALRACNGNVERAVDWL 37 (37)
T ss_dssp HHHHHHHH-TS-HHHHHHHHHHTTTSHHHHHHHH
T ss_pred HHHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHhC
Confidence 46677877 9999999999999999999999998
No 119
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.84 E-value=0.023 Score=62.15 Aligned_cols=195 Identities=17% Similarity=0.119 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCCC-hHHHHHHHHHHHHHHHHh
Q psy13351 35 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTN-FKTIKTSIQRLKEMDLFI 113 (837)
Q Consensus 35 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LTN-~~~i~~~i~~~~~~~~~~ 113 (837)
+...+..+.++...+.....++|+|.|+|......-.+..++....-+-+.-.++.|.+.. +..+...+.
T Consensus 41 v~~~l~~I~~av~~~~~~l~~ggrI~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~iiagG~~a~~~a~e--------- 111 (299)
T PRK05441 41 VEKALPQIAAAVDAAAAALRQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVVGLIAGGEKALTKAVE--------- 111 (299)
T ss_pred HHHhHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHHHHHHHhCcCccCCCchhceeeecCCcHHHHhccc---------
Confidence 4556777888888888888999999999999887766665554432222222234443321 121111100
Q ss_pred ccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC----CcchHHHHHhhcCCCEEEEecCCCCC--Cc
Q psy13351 114 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DG 187 (837)
Q Consensus 114 ~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~l~Dtn~~~--~~ 187 (837)
..++.. .-....+.- .++ ..-|++|++... +-..+++.|+..|.|+|+|++...+| ..
T Consensus 112 ---~~ed~~-----------~~~~~~l~~-~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tI~IT~~~~s~La~~ 175 (299)
T PRK05441 112 ---GAEDDA-----------ELGAADLKA-INL-TAKDVVVGIAASGRTPYVIGALEYARERGALTIGISCNPGSPLSKE 175 (299)
T ss_pred ---ccCChH-----------HHHHHHHHh-cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHh
Confidence 000000 000001100 011 367888888654 23457789999999999998644333 24
Q ss_pred ceEEccCCC-----------cchhhhhhhhhhchhhhhccc---------------------chhhhhcccCCChHHHHH
Q psy13351 188 INYVIPGND-----------DSAKSIALYTKGIVDAFLDAK---------------------TVGELRSKTLAPIMECKK 235 (837)
Q Consensus 188 i~ypIP~N~-----------~s~~si~~~~~~l~~ai~~g~---------------------~v~~lr~~t~~~~~~~k~ 235 (837)
.||+|.... .+..+..+++++|+..+..-. .++=+...||++..+|.+
T Consensus 176 aD~~I~~~~g~E~~~~st~~~s~taqk~iLn~lst~~~~~~gkv~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~ 255 (299)
T PRK05441 176 ADIAIEVVVGPEVLTGSTRMKAGTAQKLVLNMISTGVMIRLGKVYGNLMVDVKATNEKLVDRAVRIVMEATGVSREEAEA 255 (299)
T ss_pred CCEEEEcCCCCccccccccccchhHHHHHHHHHHHHHHHHccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHCcCHHHHHH
Confidence 677664432 244567777888777543222 112234457999999999
Q ss_pred HHHHhhccHHHHHHHHHHH
Q psy13351 236 ALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 236 al~~~~~d~~~A~~~Lr~~ 254 (837)
+|.+++|++..|+-.+...
T Consensus 256 ~l~~~~~~vk~a~~~~~~~ 274 (299)
T PRK05441 256 ALEAADGSVKLAIVMILTG 274 (299)
T ss_pred HHHHhCCCcHHHHHHHHhC
Confidence 9999999999999877653
No 120
>PRK12570 N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=96.52 E-value=0.075 Score=58.04 Aligned_cols=193 Identities=18% Similarity=0.158 Sum_probs=113.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCC-CCCChHHHHHHHHHHHHHHHHhc
Q psy13351 36 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGG-LLTNFKTIKTSIQRLKEMDLFIT 114 (837)
Q Consensus 36 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G-~LTN~~~i~~~i~~~~~~~~~~~ 114 (837)
......|..+...+....+++|+|.++|....+.-.+...+....-+-+....+.| ++..+..+...+.
T Consensus 38 ~~~~~~I~~a~~~~~~~l~~ggrl~~~GaG~Sg~la~~dA~e~~~tf~~~~~~~~~~iagg~~a~~~a~~---------- 107 (296)
T PRK12570 38 EKVLPQIAQAVDKIVAAFKKGGRLIYMGAGTSGRLGVLDASECPPTFSVSPEMVIGLIAGGPEAMFTAVE---------- 107 (296)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCeEEEECCchhHHHHHHHHHhCcchhcCCcccceeeeecCchHhhhccc----------
Confidence 34556788888888888899999999999987765545443333222221111222 2223332211100
Q ss_pred cCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC--Ccc
Q psy13351 115 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DGI 188 (837)
Q Consensus 115 ~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~--~~i 188 (837)
+ ..++ +.+ +.+ .+.. . .+ ..-|++|++....+. .+++.|+..|.|+|+|+....+| +..
T Consensus 108 -~-~ed~---~~~-~~~---~l~a-~----~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~s~La~~a 172 (296)
T PRK12570 108 -G-AEDD---PEL-GAQ---DLKA-I----GL-TADDVVVGIAASGRTPYVIGALEYAKQIGATTIALSCNPDSPIAKIA 172 (296)
T ss_pred -c-cCCc---HHH-HHH---HHHH-c----CC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence 0 0000 000 000 0111 0 11 356899888765444 57899999999999998654433 346
Q ss_pred eEEccC---CC--------cchhhhhhhhhhchhhhhc--cc-----ch------hhhh--------cccCCChHHHHHH
Q psy13351 189 NYVIPG---ND--------DSAKSIALYTKGIVDAFLD--AK-----TV------GELR--------SKTLAPIMECKKA 236 (837)
Q Consensus 189 ~ypIP~---N~--------~s~~si~~~~~~l~~ai~~--g~-----~v------~~lr--------~~t~~~~~~~k~a 236 (837)
||+|.. .. .+..+..+++++|+..+.. |+ +| .+|+ +-||++..+|.++
T Consensus 173 D~~I~~~~g~E~~~~st~~~s~taqk~vLd~L~t~~~~r~Gk~~~n~mvd~~~~n~kl~~Ra~~i~~~~~~~~~~~a~~~ 252 (296)
T PRK12570 173 DIAISPVVGPEVLTGSTRLKSGTAQKMVLNMLSTASMIRLGKSYQNLMVDVKATNEKLVARAVRIVMQATGCSEDEAKEL 252 (296)
T ss_pred CEEEeeCcCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhcCeEEEeecchHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 777742 22 2456777888888775432 22 11 2333 3479999999999
Q ss_pred HHHhhccHHHHHHHHHH
Q psy13351 237 LIEANGKLSKAEEILRI 253 (837)
Q Consensus 237 l~~~~~d~~~A~~~Lr~ 253 (837)
|.+++|++.-|+-.+..
T Consensus 253 l~~~~~~vk~ai~~~~~ 269 (296)
T PRK12570 253 LKESDNDVKLAILMILT 269 (296)
T ss_pred HHHhCCccHHHHHHHHh
Confidence 99999999988886655
No 121
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=96.01 E-value=0.046 Score=58.50 Aligned_cols=188 Identities=19% Similarity=0.140 Sum_probs=107.9
Q ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCC-ChHHHHHHHHHHHHHHHHhc
Q psy13351 36 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT-NFKTIKTSIQRLKEMDLFIT 114 (837)
Q Consensus 36 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LT-N~~~i~~~i~~~~~~~~~~~ 114 (837)
.+.+..|.+|+..+....+++|++.|+|......-.+...++...-+-....++.|.+. .+..+...+..
T Consensus 29 ~~~l~~I~~av~~~~~~l~~ggrl~~~GaGtSg~la~~da~e~~~tfg~~~~~v~~~iagg~~a~~~a~~~--------- 99 (257)
T cd05007 29 EAALPQIARAVDAAAERLRAGGRLIYVGAGTSGRLGVLDASELPPTFGTPPERVVGLIAGGEPALTRAVEG--------- 99 (257)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEEcCcHHHHHHHHHHHhccccccCCcccceEEEeCCHHHHHhhccc---------
Confidence 34456788888888888899999999999988776655444443222221123333332 22222111100
Q ss_pred cCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC----CcchHHHHHhhcCCCEEEEecCCCCC--Ccc
Q psy13351 115 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGI 188 (837)
Q Consensus 115 ~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i 188 (837)
..+. ... . ...+.. .++ ..-|++|++... .-..+++.|++.|.|+|+|+....+| ...
T Consensus 100 ---~edd---~~~-~---~~~l~a-----~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~I~It~~~~s~L~~~a 163 (257)
T cd05007 100 ---AEDD---EEA-G---AADLQA-----INL-TERDVVIGIAASGRTPYVLGALRYARARGALTIGIACNPGSPLLQLA 163 (257)
T ss_pred ---cCCh---HHH-H---HHHHHH-----cCC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhHHhC
Confidence 0000 000 0 000111 011 467888888644 33456789999999999998554333 135
Q ss_pred eEEccCCC-----------cchhhhhhhhhhchhhhhc--cc-----ch------hhh--------hcccCCChHHHHHH
Q psy13351 189 NYVIPGND-----------DSAKSIALYTKGIVDAFLD--AK-----TV------GEL--------RSKTLAPIMECKKA 236 (837)
Q Consensus 189 ~ypIP~N~-----------~s~~si~~~~~~l~~ai~~--g~-----~v------~~l--------r~~t~~~~~~~k~a 236 (837)
|++|.... .+..+..+++++|...+.. |+ ++ .+| .+-||++..+|.++
T Consensus 164 D~~I~~~~g~E~~~~st~~~s~~aqk~vLn~L~t~~~~~~g~v~~n~mvd~~~~n~kl~~ra~~i~~~~~~~~~~~a~~~ 243 (257)
T cd05007 164 DIAIALITGPEVVAGSTRLKAGTAQKLALNMLSTAVMIRLGKVYGNLMVDVRATNEKLRERAIRIVMEATGVSRDEAEAA 243 (257)
T ss_pred CEEEEcCCCCccccCccccccHHHHHHHHHHHHHHHHHHcchHHHHHHHHhhcCHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 66664432 2445677788877764433 22 11 123 34478999999999
Q ss_pred HHHhhccHHHHH
Q psy13351 237 LIEANGKLSKAE 248 (837)
Q Consensus 237 l~~~~~d~~~A~ 248 (837)
|.+++|++..|+
T Consensus 244 l~~~~~~~k~a~ 255 (257)
T cd05007 244 LEQAGGDVKTAI 255 (257)
T ss_pred HHHhCCCceeee
Confidence 999999887665
No 122
>TIGR00274 N-acetylmuramic acid 6-phosphate etherase. This protein, MurQ, is involved in recycling components of the bacterial murein sacculus turned over during cell growth. The cell wall metabolite anhydro-N-acetylmuramic acid (anhMurNAc) is converted by a kinase, AnmK, to MurNAc-phosphate, then converted to N-acetylglucosamine-phosphate by this etherase, called MurQ. This family of proteins is similar to the C-terminal half of a number of vertebrate glucokinase regulator proteins and contains a Prosite pattern which is shared by this group of proteins in a region of local similarity.
Probab=95.88 E-value=0.19 Score=54.77 Aligned_cols=192 Identities=15% Similarity=0.112 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHH---HcCCCcccCcccCCCC-CChHHHHHHHHHHHHHH
Q psy13351 35 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAV---RAGMPFIDQRWLGGLL-TNFKTIKTSIQRLKEMD 110 (837)
Q Consensus 35 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~---~~~~~~v~~rw~~G~L-TN~~~i~~~i~~~~~~~ 110 (837)
+...+..+.+|...+....+++|+|.|+|......-.+...++ +.|..+. .+.|.+ ..+..+.....-
T Consensus 36 v~~~l~~I~~av~~~~~~l~~gGrl~~~G~G~Sg~l~~~DA~e~~~t~g~~~~---~~~~~iaGg~~a~~~~~e~----- 107 (291)
T TIGR00274 36 IESVLPDIAAAVEQIVQAFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSPE---LVKGIIAGGECAILHAVEG----- 107 (291)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCEEEEECCcHHHHHHHHHHHHhhhhcCCCHH---HhhHHhcCChHHHhccchh-----
Confidence 3445667788888888877899999999998766543443322 2232110 111111 111111101000
Q ss_pred HHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC-
Q psy13351 111 LFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP- 185 (837)
Q Consensus 111 ~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~- 185 (837)
+.+.+. .-..-+.. .++ ..-|++|++...-+ ..+++.|++.|.|+|+|+....++
T Consensus 108 -------~Ed~~~-------~~~~dl~~-----~~l-~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~tIaIT~~~~s~L 167 (291)
T TIGR00274 108 -------AEDSTE-------AGANDLQN-----IHL-TKNDVVVGIAASGRTPYVIAGLQYARSLGALTISIACNPKSAA 167 (291)
T ss_pred -------hhcchH-------HHHHHHHh-----cCC-CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChh
Confidence 000000 00000111 112 35688888865433 356789999999999997533222
Q ss_pred -CcceEEccCC-----------Ccchhhhhhhhhhchhhh--hccc-----ch------hhh--------hcccCCChHH
Q psy13351 186 -DGINYVIPGN-----------DDSAKSIALYTKGIVDAF--LDAK-----TV------GEL--------RSKTLAPIME 232 (837)
Q Consensus 186 -~~i~ypIP~N-----------~~s~~si~~~~~~l~~ai--~~g~-----~v------~~l--------r~~t~~~~~~ 232 (837)
+..|++|+.. -.|.-+..+++++|+..+ ..|+ +| .+| .+-|+++..+
T Consensus 168 a~~aD~~I~~~~g~E~~~~st~~~s~~aqk~iLd~L~t~~~~~~gk~~~n~mvd~~~~N~kl~~Ra~~i~~~~~~~~~~~ 247 (291)
T TIGR00274 168 SEIADIAIETIVGPEILTGSSRLKAGTAQKMVLNMLSTASMIKLGKVYENLMVDVQASNEKLKARAVRIVRQATDCNKEL 247 (291)
T ss_pred HHhCCEEEecCCCCccccccchhhHHHHHHHHHHHHHHHHHHhcchhhcCeEEeeecccHHHHHHHHHHHHHHhCcCHHH
Confidence 3466666542 134566667778777754 3333 11 123 3448999999
Q ss_pred HHHHHHHhhccHHHHHHHHHHH
Q psy13351 233 CKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 233 ~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
|.++|.+++|++.-|+-.+...
T Consensus 248 a~~~l~~~~~~vk~Ai~~~~~~ 269 (291)
T TIGR00274 248 AEQTLLAADQNVKLAIVMILST 269 (291)
T ss_pred HHHHHHHhCCCcHHHHHHHHhC
Confidence 9999999999999999876653
No 123
>PRK06369 nac nascent polypeptide-associated complex protein; Reviewed
Probab=95.29 E-value=0.013 Score=53.97 Aligned_cols=73 Identities=26% Similarity=0.276 Sum_probs=53.1
Q ss_pred CCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 173 IPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 173 IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
=|-|...++... -+|.|.|-..-.....- ...-.....|+.++++|+++..+|++||.++|||+-.|+-+|.
T Consensus 42 ~P~V~~m~~~g~---~tY~I~Ge~~~e~~~~~-----~~~~i~~edI~lv~~q~gvs~~~A~~AL~~~~gDl~~AI~~L~ 113 (115)
T PRK06369 42 NPQVTVMDAQGQ---KTYQIVGEPEEVEKEAE-----KEVEIPEEDIELVAEQTGVSEEEARKALEEANGDLAEAILKLS 113 (115)
T ss_pred CCeEEEEecCCC---cEEEEEeccEEeecccc-----ccCCCCHHHHHHHHHHHCcCHHHHHHHHHHcCCcHHHHHHHHh
Confidence 366666666433 67888887544321110 0123455678889999999999999999999999999999997
Q ss_pred H
Q psy13351 253 I 253 (837)
Q Consensus 253 ~ 253 (837)
+
T Consensus 114 ~ 114 (115)
T PRK06369 114 S 114 (115)
T ss_pred c
Confidence 5
No 124
>TIGR00264 alpha-NAC-related protein. This hypothetical protein is found so far only in the Archaea. Its C-terminal domain of about 40 amino acids is homologous to the C-termini of the nascent polypeptide-associated complex alpha chain (alpha-NAC) and its yeast ortholog Egd2p and to the huntingtin-interacting protein HYPK. It shows weaker similarity, possibly through shared structural constraints rather than through homology, with the amino-terminal domain of elongation factor Ts. Alpha-NAC plays a role in preventing nascent polypeptides from binding inappropriately to membrane-targeting apparatus during translation, but is also active as a transcription regulator.
Probab=95.05 E-value=0.016 Score=53.22 Aligned_cols=73 Identities=21% Similarity=0.249 Sum_probs=55.1
Q ss_pred cCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHH
Q psy13351 171 LNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEI 250 (837)
Q Consensus 171 l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~ 250 (837)
..-|.|.+.+.-- .-+|-|-|...... +. ...-.....|+.++++|+++..+|++||.++|||+-.|+-+
T Consensus 44 f~~p~V~~m~~~G---~~tYqI~G~~~~~~-~~------~~~~i~~eDI~lV~eq~gvs~e~A~~AL~~~~gDl~~AI~~ 113 (116)
T TIGR00264 44 FENPKVQVMDILG---VKTYQITGKPKKEK-VE------EEEEITEDDIELVMKQCNVSKEEARRALEECGGDLAEAIMK 113 (116)
T ss_pred EecCeeEEEecCC---cEEEEEecccEEee-cc------cccCCCHHHHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHH
Confidence 5678888887753 37888888765321 00 00124556788899999999999999999999999999999
Q ss_pred HHH
Q psy13351 251 LRI 253 (837)
Q Consensus 251 Lr~ 253 (837)
|.+
T Consensus 114 L~~ 116 (116)
T TIGR00264 114 LEE 116 (116)
T ss_pred hhC
Confidence 864
No 125
>KOG1071|consensus
Probab=94.88 E-value=0.0052 Score=65.34 Aligned_cols=91 Identities=19% Similarity=0.266 Sum_probs=71.3
Q ss_pred hhccccc--CCCeeEEEEe-------------CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChh------
Q psy13351 261 NISNRNA--KDGVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLD------ 319 (837)
Q Consensus 261 kk~~r~~--~eG~i~~y~~-------------~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~------ 319 (837)
+|+-+.. ..+.++.|.| |++++||.+|.....++ .+..+++.|+.|++.|.|..+.
T Consensus 211 rR~~~~ka~~g~~l~~y~H~A~q~agt~~l~~g~~~alvAi~~~~s~~~---~~~~~~~~i~q~ivgm~p~s~~e~~k~e 287 (340)
T KOG1071|consen 211 RRAACMKAPSGTYLGSYSHGAPQSAGTHKLPLGEYGALVAINSVSSQLT---SLEDVAKQICQHIVGMSPESVGESLKDE 287 (340)
T ss_pred eEEEEEecCCCceEEeeecCCCCCccccccccccchhhhhhhhccchhh---hHHHHHHHHHHHhhccChhhhccccccc
Confidence 4444443 2456899998 36788888887665443 4677999999999999997665
Q ss_pred ----------hhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCC
Q psy13351 320 ----------QLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNN 360 (837)
Q Consensus 320 ----------~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~ 360 (837)
-+.|+|+-|+.+||.+++. +-|.+|..|+||++|+
T Consensus 288 ~~~~~e~et~ll~q~~lld~~itv~~~l~------~~~~~V~DfvR~E~Ge 332 (340)
T KOG1071|consen 288 PGQGAEAETALLSQPSLLDPSITVKEYLD------PHNVSVVDFVRFEVGE 332 (340)
T ss_pred ccccccchhhheecHhhcCchhhHHHHhc------cCCcchHHHHHHHhcc
Confidence 1779999999999988887 6678899999999997
No 126
>smart00165 UBA Ubiquitin associated domain. Present in Rad23, SNF1-like kinases. The newly-found UBA in p62 is known to bind ubiquitin.
Probab=94.80 E-value=0.031 Score=40.79 Aligned_cols=26 Identities=38% Similarity=0.328 Sum_probs=24.7
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
.|.+..+|+.||..++||+++|++||
T Consensus 11 mGf~~~~a~~aL~~~~~d~~~A~~~L 36 (37)
T smart00165 11 MGFSREEALKALRAANGNVERAAEYL 36 (37)
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHH
Confidence 48999999999999999999999998
No 127
>cd00194 UBA Ubiquitin Associated domain. The UBA domain is a commonly occurring sequence motif in some members of the ubiquitination pathway, UV excision repair proteins, and certain protein kinases. Although its specific role is so far unknown, it has been suggested that UBA domains are involved in conferring protein target specificity. The domain, a compact three helix bundle, has a conserved GFP-loop and the proline is thought to be critical for binding. The UBA domain is distinct from the conserved three helical domain seen in the N-terminus of EF-TS and eukaryotic NAC proteins.
Probab=94.53 E-value=0.04 Score=40.43 Aligned_cols=27 Identities=30% Similarity=0.213 Sum_probs=25.5
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
.|.+..+|..||..++||+++|++||.
T Consensus 11 mGf~~~~~~~AL~~~~~d~~~A~~~L~ 37 (38)
T cd00194 11 MGFSREEARKALRATNNNVERAVEWLL 37 (38)
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHh
Confidence 588999999999999999999999985
No 128
>COG1308 EGD2 Transcription factor homologous to NACalpha-BTF3 [Transcription]
Probab=87.42 E-value=0.52 Score=43.72 Aligned_cols=35 Identities=29% Similarity=0.206 Sum_probs=30.1
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
.|+-.-++|+++..++++||+++|||+-.|+--|.
T Consensus 87 DIkLV~eQa~VsreeA~kAL~e~~GDlaeAIm~L~ 121 (122)
T COG1308 87 DIKLVMEQAGVSREEAIKALEEAGGDLAEAIMKLT 121 (122)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcHHHHHHHhc
Confidence 35555678999999999999999999999997764
No 129
>PF14555 UBA_4: UBA-like domain; PDB: 2DAL_A 3BQ3_A 2L4E_A 2L4F_A 2DZL_A 2L2D_A 2DAM_A 1V92_A 3E21_A.
Probab=87.35 E-value=0.52 Score=35.71 Aligned_cols=36 Identities=19% Similarity=-0.049 Sum_probs=28.6
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+.++..-||++...|...|+.+|||++.|++.-=.
T Consensus 3 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Av~~y~~ 38 (43)
T PF14555_consen 3 KIAQFMSITGADEDVAIQYLEANNWDLEAAVNAYFD 38 (43)
T ss_dssp HHHHHHHHH-SSHHHHHHHHHHTTT-HHHHHHHHHH
T ss_pred HHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 356677789999999999999999999999986543
No 130
>COG2103 Predicted sugar phosphate isomerase [General function prediction only]
Probab=84.86 E-value=13 Score=39.47 Aligned_cols=195 Identities=17% Similarity=0.141 Sum_probs=120.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhc
Q psy13351 35 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFIT 114 (837)
Q Consensus 35 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~ 114 (837)
.++.+..+..|...+..-.++||+..++|-....+--|...++-..-|-+...-+=|.+--=.. .+.+. .+..+
T Consensus 39 V~~alp~Ia~Av~~~~~~l~~GGRLiY~GAGTSGRLGvlDAsEcPPTfgv~~e~ViglIAGG~~---A~~~a--vEGaE- 112 (298)
T COG2103 39 VEAALPQIAAAVDIIAAALKQGGRLIYIGAGTSGRLGVLDASECPPTFGVPPELVIGLIAGGEE---AILKA--VEGAE- 112 (298)
T ss_pred HHHHhHHHHHHHHHHHHHHHcCCeEEEEcCCcccchhccchhhCCCCcCCChhHeeeeecCCHH---HHHHh--hcCcc-
Confidence 4677888889999999999999999999999988877776665444333333333333332221 11110 11000
Q ss_pred cCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEec----CCCcchHHHHHhhcCCCEEEE-ecCCCCCC-cc
Q psy13351 115 NGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIID----VGYHKGAVSEAIKLNIPIIGV-VDTNHSPD-GI 188 (837)
Q Consensus 115 ~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~----~~~~~~ai~Ea~~l~IP~i~l-~Dtn~~~~-~i 188 (837)
+-.+- -+ .-+++ + ++ ..-|+||=+- ..+=.-++++|++.|..+|+| |+-++..+ ..
T Consensus 113 -----D~~~~-----g~--~dl~~-~-~l----t~~DvvvgIaASGrTPYvigal~yAr~~Ga~Ti~iacNp~s~i~~~A 174 (298)
T COG2103 113 -----DDEEL-----GE--ADLKN-I-GL----TAKDVVVGIAASGRTPYVIGALEYARQRGATTIGIACNPGSAISRIA 174 (298)
T ss_pred -----ccHHH-----HH--HHHHH-c-CC----CcCCEEEEEecCCCCchhhHHHHHHHhcCCeEEEeecCCCchhhhhc
Confidence 00000 00 00100 0 11 3456666553 234456889999999999999 67776544 36
Q ss_pred eEEccC---------C--Ccchhhhhhhhhhchhhhh--ccc-------------------chhhhhcccCCChHHHHHH
Q psy13351 189 NYVIPG---------N--DDSAKSIALYTKGIVDAFL--DAK-------------------TVGELRSKTLAPIMECKKA 236 (837)
Q Consensus 189 ~ypIP~---------N--~~s~~si~~~~~~l~~ai~--~g~-------------------~v~~lr~~t~~~~~~~k~a 236 (837)
||+|-- . =++-.+-.+++|+|+.+.. -|+ .++=+.+.|++...++..+
T Consensus 175 d~~I~~~vGPEvltGSTRlKaGTAQKlvLNMlST~~Mi~lGKvy~NlMVDv~atN~KL~dRa~RIv~~aT~~~~~~A~~~ 254 (298)
T COG2103 175 DIAIEPVVGPEVLTGSTRLKAGTAQKLVLNMLSTGVMIKLGKVYGNLMVDVKATNEKLRDRAVRIVMEATGCSAEEAEAL 254 (298)
T ss_pred CcceeeccCccccccccccccchHHHHHHHHHHHHHHHHhcccccceEEEeecchHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 676632 2 2455677889999987543 232 2222334589999999999
Q ss_pred HHHhhccHHHHHHHHHH
Q psy13351 237 LIEANGKLSKAEEILRI 253 (837)
Q Consensus 237 l~~~~~d~~~A~~~Lr~ 253 (837)
|.+++++..-|+-.+..
T Consensus 255 L~~~~~~vK~AIvm~~~ 271 (298)
T COG2103 255 LEEAGGNVKLAIVMLLT 271 (298)
T ss_pred HHHcCCccHhHHHHHHh
Confidence 99999999999877655
No 131
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=83.48 E-value=13 Score=35.62 Aligned_cols=115 Identities=18% Similarity=0.158 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcc-cCCCCCChHHHHHHHHHHHHHHHHhccCc
Q psy13351 39 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGLLTNFKTIKTSIQRLKEMDLFITNGS 117 (837)
Q Consensus 39 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~LTN~~~i~~~i~~~~~~~~~~~~~~ 117 (837)
...+.+|...+.....++|+|.++|+....... ..++.+.+..+-.+++ .+.+.-+-...... -..++ ....
T Consensus 18 ~~~i~~aa~~i~~~~~~gg~i~~~G~G~S~~~a-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~---~~~~ 90 (138)
T PF13580_consen 18 AEAIEKAADLIAEALRNGGRIFVCGNGHSAAIA-SHFAADLGGLFGVNRILLPAIALNDDALTAI---SNDLE---YDEG 90 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--EEEEESTHHHHHH-HHHHHHHHCHSSSTSSS-SEEETTSTHHHHH---HHHTT---GGGT
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCchhhhHH-HHHHHHHhcCcCCCcccccccccccchHhhh---hcccc---hhhH
Confidence 577899999999999999999999998775443 3344444333333344 33322221100000 00110 1111
Q ss_pred cccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC-Ccch---HHHHHhhcCCCEEEEe
Q psy13351 118 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG-YHKG---AVSEAIKLNIPIIGVV 179 (837)
Q Consensus 118 ~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~-~~~~---ai~Ea~~l~IP~i~l~ 179 (837)
| -+ .+...+.+ +.-|++|+++.. ++.. |+++|++.|.+||+|.
T Consensus 91 ~-----------~~---~~~~~~~~-----~~gDvli~iS~SG~s~~vi~a~~~Ak~~G~~vIalT 137 (138)
T PF13580_consen 91 F-----------AR---QLLALYDI-----RPGDVLIVISNSGNSPNVIEAAEEAKERGMKVIALT 137 (138)
T ss_dssp H-----------HH---HHHHHTT-------TT-EEEEEESSS-SHHHHHHHHHHHHTT-EEEEEE
T ss_pred H-----------HH---HHHHHcCC-----CCCCEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 1 11 12222221 578999998764 3333 5689999999999985
No 132
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=81.90 E-value=29 Score=35.32 Aligned_cols=128 Identities=11% Similarity=0.029 Sum_probs=68.7
Q ss_pred HHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcc-cCCC----CCChHHHHHHHHHHHHHHHH
Q psy13351 38 TLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW-LGGL----LTNFKTIKTSIQRLKEMDLF 112 (837)
Q Consensus 38 T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw-~~G~----LTN~~~i~~~i~~~~~~~~~ 112 (837)
-...|.+|+..|.....++++|.|+|......-. +.++......| +| .+|. ++++..+.. +
T Consensus 26 ~~~~i~~a~~~i~~al~~~~rI~i~G~G~S~~~A-~~~a~~l~~~~---~~~r~g~~~~~~~d~~~~~~-------~--- 91 (192)
T PRK00414 26 NIHAIQRAAVLIADSFKAGGKVLSCGNGGSHCDA-MHFAEELTGRY---RENRPGYPAIAISDVSHLSC-------V--- 91 (192)
T ss_pred hHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHhcccc---cCCCCCceEEecCcHHHHhh-------h---
Confidence 3467899999999999999999999987754322 22332221101 11 1111 133221100 0
Q ss_pred hccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--C
Q psy13351 113 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--D 186 (837)
Q Consensus 113 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~ 186 (837)
.....+ ...+.+... .+-+..|++|+++..-+ ..+++.|+..|+|+|+|+....+| +
T Consensus 92 ~~d~~~-----------~~~~~~~~~------~~~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~l~~ 154 (192)
T PRK00414 92 SNDFGY-----------DYVFSRYVE------AVGREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGKMAG 154 (192)
T ss_pred hccCCH-----------HHHHHHHHH------HhCCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHH
Confidence 000000 000011111 11257789998875432 256788899999999998765443 2
Q ss_pred cceEEccCCC
Q psy13351 187 GINYVIPGND 196 (837)
Q Consensus 187 ~i~ypIP~N~ 196 (837)
..|+.|....
T Consensus 155 ~ad~~l~~~~ 164 (192)
T PRK00414 155 LADIEIRVPH 164 (192)
T ss_pred hCCEEEEeCC
Confidence 4566665555
No 133
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=81.27 E-value=14 Score=36.92 Aligned_cols=38 Identities=11% Similarity=0.086 Sum_probs=28.0
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP 185 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~ 185 (837)
...|++|+++-..+ ..+++.|+..|+|||+|+|...+|
T Consensus 71 ~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~ 112 (179)
T TIGR03127 71 KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPEST 112 (179)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCc
Confidence 46688888864422 345677899999999999977655
No 134
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=79.40 E-value=20 Score=35.72 Aligned_cols=46 Identities=13% Similarity=0.020 Sum_probs=32.4
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCCC--cceEEcc
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 193 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~ypIP 193 (837)
+..|++|+++...+ ..+++.|+..|+|||+|++...+|- ..|+.|.
T Consensus 100 ~~~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD~~l~ 151 (177)
T cd05006 100 QPGDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELADIEIH 151 (177)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEE
Confidence 56799998875433 3567889999999999998765442 2444443
No 135
>PRK13938 phosphoheptose isomerase; Provisional
Probab=78.25 E-value=19 Score=36.94 Aligned_cols=133 Identities=14% Similarity=0.102 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCc-ccC--CCCCChHHHHHHHHHHHHHHHH
Q psy13351 36 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQR-WLG--GLLTNFKTIKTSIQRLKEMDLF 112 (837)
Q Consensus 36 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~r-w~~--G~LTN~~~i~~~i~~~~~~~~~ 112 (837)
......+..++..+.....++++|+++|....+.-. +.++.+....|-.+| =+| ....+-..+...
T Consensus 25 ~~~~~~~~~~a~~~~~~l~~g~rI~i~G~G~S~~~A-~~fa~~L~~~~~~~r~~lg~~~l~~~~~~~~a~---------- 93 (196)
T PRK13938 25 RVLLEAARAIGDRLIAGYRAGARVFMCGNGGSAADA-QHFAAELTGHLIFDRPPLGAEALHANSSHLTAV---------- 93 (196)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHH-HHHHHHcCCCccCCcCccceEEEeCChHHHHHh----------
Confidence 345566777778877778999999999988765443 334433322222111 011 111111000000
Q ss_pred hccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--C
Q psy13351 113 ITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--D 186 (837)
Q Consensus 113 ~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~ 186 (837)
..+..+. +. ..+.+. ..-...|++|+++...+ ..+++.|+..|+|+|+|++...+| +
T Consensus 94 ~nd~~~~-----~~---------~~~~~~---~~~~~~DllI~iS~SG~t~~vi~a~~~Ak~~G~~vI~iT~~~~s~La~ 156 (196)
T PRK13938 94 ANDYDYD-----TV---------FARALE---GSARPGDTLFAISTSGNSMSVLRAAKTARELGVTVVAMTGESGGQLAE 156 (196)
T ss_pred hccccHH-----HH---------HHHHHH---hcCCCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCChhhh
Confidence 0000000 00 011111 12367899999976533 356788999999999999765544 2
Q ss_pred cceEEccCCC
Q psy13351 187 GINYVIPGND 196 (837)
Q Consensus 187 ~i~ypIP~N~ 196 (837)
..|+.|...+
T Consensus 157 ~aD~~l~v~~ 166 (196)
T PRK13938 157 FADFLINVPS 166 (196)
T ss_pred hCCEEEEeCC
Confidence 3566554333
No 136
>COG0279 GmhA Phosphoheptose isomerase [Carbohydrate transport and metabolism]
Probab=78.02 E-value=77 Score=31.54 Aligned_cols=134 Identities=16% Similarity=0.165 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCC-CC-ChHHHHHHHHHHHHHHHHh
Q psy13351 36 EKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGL-LT-NFKTIKTSIQRLKEMDLFI 113 (837)
Q Consensus 36 ~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~-LT-N~~~i~~~i~~~~~~~~~~ 113 (837)
+.-...+.+|...+..-..+|++||..|+.-.+.+.-.-.++.+|-|....+-+|+. || |...+..--
T Consensus 21 ~~l~~~I~~aa~~i~~~l~~G~Kvl~cGNGgSaadAqHfaael~gRf~~eR~~lpaIaLt~dsS~lTai~---------- 90 (176)
T COG0279 21 EALIEAIERAAQLLVQSLLNGNKVLACGNGGSAADAQHFAAELTGRFEKERPSLPAIALSTDSSVLTAIA---------- 90 (176)
T ss_pred HHhHHHHHHHHHHHHHHHHcCCEEEEECCCcchhhHHHHHHHHhhHHHhcCCCCCeeEeecccHHHhhhh----------
Confidence 445677888889998888999999999999987777666677788777666667764 44 655432211
Q ss_pred ccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCC----CC
Q psy13351 114 TNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNH----SP 185 (837)
Q Consensus 114 ~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~----~~ 185 (837)
++|...+ .|.|+.+- +.+.-|+++=+.+.-|. .|++.|..+++-||++.-.|. ..
T Consensus 91 -----NDy~yd~--vFsRqveA----------~g~~GDvLigISTSGNS~nVl~Ai~~Ak~~gm~vI~ltG~~GG~~~~~ 153 (176)
T COG0279 91 -----NDYGYDE--VFSRQVEA----------LGQPGDVLIGISTSGNSKNVLKAIEAAKEKGMTVIALTGKDGGKLAGL 153 (176)
T ss_pred -----ccccHHH--HHHHHHHh----------cCCCCCEEEEEeCCCCCHHHHHHHHHHHHcCCEEEEEecCCCcccccc
Confidence 2232222 23343322 23677888888776544 467889999999999975543 22
Q ss_pred CcceEEccCCC
Q psy13351 186 DGINYVIPGND 196 (837)
Q Consensus 186 ~~i~ypIP~N~ 196 (837)
..+.+.||..+
T Consensus 154 ~D~~i~VPs~~ 164 (176)
T COG0279 154 LDVEIRVPSTD 164 (176)
T ss_pred cceEEecCCCc
Confidence 23555667763
No 137
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=74.83 E-value=32 Score=38.01 Aligned_cols=45 Identities=13% Similarity=0.191 Sum_probs=31.3
Q ss_pred CCCCEEEEecCC----CcchHHHHHhhcCCCEEEEecCCCCCC--cceEEc
Q psy13351 148 IIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSPD--GINYVI 192 (837)
Q Consensus 148 ~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~ypI 192 (837)
...|++|+++.. +=..+++.|+..|+|||+|++...+|- ..||.+
T Consensus 93 ~~~d~~I~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~ad~~l 143 (326)
T PRK10892 93 TPQDVVIAISNSGESSEILALIPVLKRLHVPLICITGRPESSMARAADIHL 143 (326)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCcccccCCEEE
Confidence 356888888654 333567899999999999998764442 345544
No 138
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=74.62 E-value=38 Score=34.69 Aligned_cols=31 Identities=16% Similarity=0.093 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEecchhhH
Q psy13351 39 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQAR 69 (837)
Q Consensus 39 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~ 69 (837)
...|.+|+..+.....++++|+|+|....+.
T Consensus 24 ~~~i~~a~~~l~~~l~~~~rI~~~G~GgSa~ 54 (196)
T PRK10886 24 PDAISRAAMTLVQSLLNGNKILCCGNGTSAA 54 (196)
T ss_pred HHHHHHHHHHHHHHHHcCCEEEEEECcHHHH
Confidence 4778999999999999999999999887543
No 139
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=73.92 E-value=29 Score=37.31 Aligned_cols=46 Identities=11% Similarity=0.124 Sum_probs=34.5
Q ss_pred CCCCEEEEecCCCc-c---hHHHHHhhcCCCEEEEecCCCCCC--cceEEcc
Q psy13351 148 IIPDAIFIIDVGYH-K---GAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 193 (837)
Q Consensus 148 ~~P~~vii~~~~~~-~---~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~ypIP 193 (837)
...|++|+++...+ . .+++.|...|+|||+|+|...+|- ..|+.++
T Consensus 174 ~~~Dv~I~iS~sg~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad~~l~ 225 (278)
T PRK11557 174 SPDDLLLAISYSGERRELNLAADEALRVGAKVLAITGFTPNALQQRASHCLY 225 (278)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCCEEEE
Confidence 47889998875533 2 578899999999999999876553 4566664
No 140
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=71.18 E-value=16 Score=32.73 Aligned_cols=77 Identities=18% Similarity=0.141 Sum_probs=48.4
Q ss_pred eEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHH
Q psy13351 58 TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLN 137 (837)
Q Consensus 58 ~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~ 137 (837)
+||+||.......-++..+++.|...+ |. |-=.++..-.. ++.
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~---~h-g~~~~~~~~~~---------------------------------~l~ 43 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLI---HH-GRDGGDEKKAS---------------------------------RLP 43 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEE---EE-ecCCCCccchh---------------------------------HHH
Confidence 478999988777788888888888764 44 22222111000 011
Q ss_pred HhhccccCCCCCCCEEEEecCCCcch----HHHHHhhcCCCEEEE
Q psy13351 138 RVIGGIKNMNIIPDAIFIIDVGYHKG----AVSEAIKLNIPIIGV 178 (837)
Q Consensus 138 ~~~~g~~~~~~~P~~vii~~~~~~~~----ai~Ea~~l~IP~i~l 178 (837)
. .-..+|+||++--.-++. +-++|.+.+||++-.
T Consensus 44 ~-------~i~~aD~VIv~t~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 44 S-------KIKKADLVIVFTDYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred H-------hcCCCCEEEEEeCCcChHHHHHHHHHHHHcCCcEEEE
Confidence 1 125899999885555444 447788899998754
No 141
>PRK15482 transcriptional regulator MurR; Provisional
Probab=70.76 E-value=47 Score=35.94 Aligned_cols=45 Identities=16% Similarity=0.106 Sum_probs=31.8
Q ss_pred CCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCCC--cceEEcc
Q psy13351 149 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 193 (837)
Q Consensus 149 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~ypIP 193 (837)
.-|++|+++-..+ ..+++.|...|.|||+|+|...+|- ..|+.|+
T Consensus 182 ~~Dv~i~iS~sg~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad~~l~ 232 (285)
T PRK15482 182 KGDVQIAISYSGSKKEIVLCAEAARKQGATVIAITSLADSPLRRLAHFTLD 232 (285)
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCCEEEE
Confidence 5588888864433 3566888899999999999876553 3555544
No 142
>PRK02947 hypothetical protein; Provisional
Probab=69.92 E-value=46 Score=35.34 Aligned_cols=31 Identities=23% Similarity=0.103 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEecchhhH
Q psy13351 39 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQAR 69 (837)
Q Consensus 39 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~ 69 (837)
...|.+|+..+.....++++|.|+|......
T Consensus 23 ~e~i~~aa~lla~~i~~a~~I~i~G~G~S~~ 53 (246)
T PRK02947 23 AEAIEKAADLIADSIRNGGLIYVFGTGHSHI 53 (246)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEcCcHHHH
Confidence 3568899999999889999999999987544
No 143
>PF03943 TAP_C: TAP C-terminal domain; InterPro: IPR005637 This entry contains the NXF family of shuttling transport receptors for nuclear export of mRNA, which include: vertebrate mRNA export factor TAP or nuclear RNA export factor 1 (NXF1). Caenorhabditis elegans nuclear RNA export factor 1 (nxf-1). yeast mRNA export factor MEX67. Members of the NXF family have a modular structure. A nuclear localization sequence and a noncanonical RNA recognition motif (RRM) (see PDOC00030 from PROSITEDOC) followed by four LRR repeats are located in its N-terminal half. The C-terminal half contains a NTF2 domain (see PDOC50177 from PROSITEDOC) followed by a second domain, TAP-C. The TAP-C domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate nuclear shuttling [,]. The Tap-C domain is made of four alpha helices packed against each other. The arrangement of helices 1, 2 and 3 is similar to that seen in a UBA fold. and is joined to the next module by flexible 12-residue Pro-rich linker [, ].; GO: 0051028 mRNA transport, 0005634 nucleus; PDB: 1OAI_A 1GO5_A 2KHH_A 2JP7_A.
Probab=68.86 E-value=3 Score=32.96 Aligned_cols=36 Identities=19% Similarity=0.107 Sum_probs=30.5
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
+|.++...||-...=|.+-|++++||++.|+....+
T Consensus 3 mv~~~s~~Tgmn~~~s~~CL~~n~Wd~~~A~~~F~~ 38 (51)
T PF03943_consen 3 MVQQFSQQTGMNLEWSQKCLEENNWDYERALQNFEE 38 (51)
T ss_dssp HHHHHHHHCSS-CCHHHHHHHHTTT-CCHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 466788889999999999999999999999998876
No 144
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=66.30 E-value=35 Score=34.06 Aligned_cols=49 Identities=20% Similarity=0.148 Sum_probs=33.7
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCCC--c--ceEEccCCC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--G--INYVIPGND 196 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~~--~--i~ypIP~N~ 196 (837)
..-|++|+++...+ ..+++.|+..|+|+|+|+|+..+|- . +.+.+|.+.
T Consensus 74 ~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la~~ad~~l~~~~~~ 130 (179)
T cd05005 74 GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLAKLADVVVVIPAAT 130 (179)
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEeCCcc
Confidence 36688888865422 3467888999999999999876553 2 344556544
No 145
>smart00804 TAP_C C-terminal domain of vertebrate Tap protein. The vertebrate Tap protein is a member of the NXF family of shuttling transport receptors for the nuclear export of mRNA. Its most C-terminal domain is important for binding to FG repeat-containing nuclear pore proteins (FG-nucleoporins) and is sufficient to mediate shuttling. This domain forms a compact four-helix fold related to that of a UBA domain.
Probab=64.42 E-value=8.1 Score=31.98 Aligned_cols=37 Identities=14% Similarity=0.030 Sum_probs=32.3
Q ss_pred cchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 217 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 217 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.++.++...||-...=|.+.|+++|||++.|+.-..+
T Consensus 14 ~~v~~~~~~Tgmn~~~s~~cLe~~~Wd~~~Al~~F~~ 50 (63)
T smart00804 14 EMVQAFSAQTGMNAEYSQMCLEDNNWDYERALKNFTE 50 (63)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 3466778889999999999999999999999988776
No 146
>PRK13936 phosphoheptose isomerase; Provisional
Probab=63.75 E-value=1.4e+02 Score=30.48 Aligned_cols=51 Identities=10% Similarity=0.128 Sum_probs=34.2
Q ss_pred CCCCEEEEecCCCcch----HHHHHhhcCCCEEEEecCCCCC-Cc----ceEEccCCCcc
Q psy13351 148 IIPDAIFIIDVGYHKG----AVSEAIKLNIPIIGVVDTNHSP-DG----INYVIPGNDDS 198 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~----ai~Ea~~l~IP~i~l~Dtn~~~-~~----i~ypIP~N~~s 198 (837)
+.-|++|+++...+.. +++.|+..|+|+|+|++.+.+| .. .|+.|....+.
T Consensus 110 ~~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad~~l~v~~~~ 169 (197)
T PRK13936 110 QPGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPEDVEIRVPAER 169 (197)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCCEEEEeCCCc
Confidence 4678888887553333 5788999999999999855432 22 45555554433
No 147
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria. Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.
Probab=62.40 E-value=57 Score=27.67 Aligned_cols=33 Identities=18% Similarity=0.301 Sum_probs=22.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 754 IPPLTKERREEIVKLIKNITEETKISIRKIRRD 786 (837)
Q Consensus 754 iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~ 786 (837)
-|+.-+|.|+++...+.++.++.+....+++..
T Consensus 20 aP~sG~e~R~~l~~~~~~~~~~~~~~~~~~~~~ 52 (74)
T PF12732_consen 20 APKSGKETREKLKDKAEDLKDKAKDLYEEAKEK 52 (74)
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 477788888888887776666665555554443
No 148
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=61.09 E-value=8.3 Score=37.75 Aligned_cols=56 Identities=13% Similarity=0.206 Sum_probs=33.9
Q ss_pred EeeccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHH
Q psy13351 570 KATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALK 634 (837)
Q Consensus 570 ilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~ 634 (837)
+.+|||||+|+ ++ +.=.-.-+++..+ -+.|=..++...++|+++.|+.|++...+.
T Consensus 11 li~DVDGvLTD-G~------ly~~~~Gee~KaF--nv~DG~Gik~l~~~Gi~vAIITGr~s~ive 66 (170)
T COG1778 11 LILDVDGVLTD-GK------LYYDENGEEIKAF--NVRDGHGIKLLLKSGIKVAIITGRDSPIVE 66 (170)
T ss_pred EEEeccceeec-Ce------EEEcCCCceeeee--eccCcHHHHHHHHcCCeEEEEeCCCCHHHH
Confidence 36799999985 22 2211111222111 123334677888999999999999865554
No 149
>PF12685 SpoIIIAH: SpoIIIAH-like protein; InterPro: IPR024232 Stage III sporulation protein AH (SpoIIIAH) is a protein that is involved in forespore engulfment. It forms a channel with SpoIIIAH that is open on the forespore end and closed (or gated) on the mother cell end. This allows sigma-E-directed gene expression in the mother-cell compartment of the sporangium to trigger the activation of sigma-G forespore-specific gene expression by a pathway of intercellular signaling. This family of proteins is found in bacteria, archaea and eukaryotes and so must have a wider function than in sporulation. Proteins in this family are typically between 174 and 223 amino acids in length.; PDB: 3UZ0_A 3TUF_A.
Probab=59.38 E-value=36 Score=34.87 Aligned_cols=63 Identities=27% Similarity=0.311 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHH--HHHHHHHHH
Q psy13351 768 LIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFIL--EINQLLINK 830 (837)
Q Consensus 768 ~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~--~id~~~~~k 830 (837)
....++.++|-..-..|.+.++.++....+...|++..+.+.+++.+|++...+ .|+.++++|
T Consensus 83 ~~~~~f~~~rl~Re~~r~~~~e~L~~ii~~~~~s~~~k~~A~~~~~~l~~~~~kE~~iE~llkak 147 (196)
T PF12685_consen 83 SGSDYFAEARLEREQSRSKQIETLKEIINNENASEEEKKEAQDKLLELTEKMEKEMEIENLLKAK 147 (196)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHT-TTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 334579999999999999999999999999999999999999999999987665 466666655
No 150
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=58.29 E-value=1.1e+02 Score=33.13 Aligned_cols=46 Identities=28% Similarity=0.275 Sum_probs=32.3
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCCC--cceEEcc
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIP 193 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~ypIP 193 (837)
...|++|+++...+ ..+++.|...|+|||+|+|...+|- ..|+.|+
T Consensus 186 ~~~Dl~I~iS~sG~t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad~~l~ 237 (292)
T PRK11337 186 QEGDVVLVVSHSGRTSDVIEAVELAKKNGAKIICITNSYHSPIAKLADYVIC 237 (292)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCCEEEE
Confidence 46788888864432 3456788899999999999887663 3455443
No 151
>PF13528 Glyco_trans_1_3: Glycosyl transferase family 1
Probab=57.85 E-value=56 Score=35.48 Aligned_cols=114 Identities=17% Similarity=0.189 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCcccc
Q psy13351 41 MYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120 (837)
Q Consensus 41 ~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~ 120 (837)
++.|+..++..+ + +-.+.|+...+.. ..+..........-+.-.+..|.+-.|.++........
T Consensus 14 H~~R~~~la~~L-r-g~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------- 77 (318)
T PF13528_consen 14 HASRCLALARAL-R-GHEVTFITSGPAP-EFLKPRFPVREIPGLGPIQENGRLDRWKTVRNNIRWLA------------- 77 (318)
T ss_pred HHHHHHHHHHHH-c-cCceEEEEcCCcH-HHhccccCEEEccCceEeccCCccchHHHHHHHHHhhH-------------
Confidence 456677777777 3 5668887777554 33322111111111111234455555665544432110
Q ss_pred CChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCC
Q psy13351 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSP 185 (837)
Q Consensus 121 ~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~ 185 (837)
.+.+...++.+.+.. ..||+|| +| .+..+..-|...|||+|++.|-...+
T Consensus 78 -------~~~~~~~~~~~~l~~-----~~pDlVI-sD--~~~~~~~aa~~~giP~i~i~~~~~~~ 127 (318)
T PF13528_consen 78 -------RLARRIRREIRWLRE-----FRPDLVI-SD--FYPLAALAARRAGIPVIVISNQYWFL 127 (318)
T ss_pred -------HHHHHHHHHHHHHHh-----cCCCEEE-Ec--ChHHHHHHHHhcCCCEEEEEehHHcc
Confidence 112222223333322 2699775 55 34456788899999999998776543
No 152
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=57.85 E-value=22 Score=39.91 Aligned_cols=49 Identities=22% Similarity=0.407 Sum_probs=36.6
Q ss_pred C-CeEEEEecch----hhHHHHHHHHHHcCCCcccCcccC-CCCCChHHHHHHHHH
Q psy13351 56 K-GTLLFVGTKR----QARGVIANEAVRAGMPFIDQRWLG-GLLTNFKTIKTSIQR 105 (837)
Q Consensus 56 ~-~~iLfv~t~~----~~~~~v~~~a~~~~~~~v~~rw~~-G~LTN~~~i~~~i~~ 105 (837)
| +++.|||++- ..+.+++.+....|..-+.++++| |. |+|..+-..|+.
T Consensus 133 G~~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~-td~~~ii~~I~~ 187 (363)
T PF13433_consen 133 GAKRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGA-TDFDPIIAEIKA 187 (363)
T ss_dssp --SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-H-HHHHHHHHHHHH
T ss_pred CCceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCc-hhHHHHHHHHHh
Confidence 6 8999999997 578888888888899999999988 44 888876444443
No 153
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=56.12 E-value=78 Score=30.16 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=37.5
Q ss_pred CCCCEEEEecCCCc-----chHHHHHhhcCCCEEEEecCCCCCCcceE--EccCCCc--chhhhhhhhhhchhhhh
Q psy13351 148 IIPDAIFIIDVGYH-----KGAVSEAIKLNIPIIGVVDTNHSPDGINY--VIPGNDD--SAKSIALYTKGIVDAFL 214 (837)
Q Consensus 148 ~~P~~vii~~~~~~-----~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~y--pIP~N~~--s~~si~~~~~~l~~ai~ 214 (837)
...+++|++++..+ ..+++.+.+.+.|+|+|.+.+.+....|+ .+|.-.+ ++-..-+.+++|+..+.
T Consensus 60 ~~~~~vi~is~~g~t~~~~~~~~~~~~~~~~~vi~it~~~~s~~~~d~~i~~~~~~~~~~~~~~~~~~q~la~~~a 135 (153)
T cd05009 60 DEGTPVIFLAPEDRLEEKLESLIKEVKARGAKVIVITDDGDAKDLADVVIRVPATVEELSPLLYIVPLQLLAYHLA 135 (153)
T ss_pred cCCCcEEEEecCChhHHHHHHHHHHHHHcCCEEEEEecCCcccccCCeEEECCCCchhHHHHHHHHHHHHHHHHHH
Confidence 34566777764322 24778888999999999876543333444 3443222 23333334455555444
No 154
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=55.54 E-value=20 Score=37.81 Aligned_cols=47 Identities=13% Similarity=0.089 Sum_probs=34.3
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCC
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGN 195 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N 195 (837)
..||.+|+.++..+..+++++...|||+|.+ |++.+.....|.-+-|
T Consensus 63 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~d~ 109 (275)
T cd06295 63 GRADGVILIGQHDQDPLPERLAETGLPFVVW-GRPLPGQPYCYVGSDN 109 (275)
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCccCCCCCCEEEECc
Confidence 4799999987766667789999999999966 7765444455554443
No 155
>COG4008 Predicted metal-binding transcription factor [Transcription]
Probab=54.40 E-value=14 Score=34.48 Aligned_cols=28 Identities=39% Similarity=0.453 Sum_probs=25.7
Q ss_pred CCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 227 LAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 227 ~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
..+..++++||+++| |+..|.+.||.++
T Consensus 125 ~v~~eeAr~aleeag-Dl~~A~k~l~~~~ 152 (153)
T COG4008 125 FVTPEEAREALEEAG-DLRTAMKILRMKS 152 (153)
T ss_pred cCCHHHHHHHHHHcC-CHHHHHHHHHHhc
Confidence 478899999999999 9999999999875
No 156
>PF08938 HBS1_N: HBS1 N-terminus; InterPro: IPR015033 This domain is found in various eukaryotic HBS1-like proteins. ; PDB: 1UFZ_A 3IZQ_1.
Probab=54.29 E-value=5.5 Score=34.49 Aligned_cols=34 Identities=29% Similarity=0.161 Sum_probs=26.3
Q ss_pred ChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhh
Q psy13351 229 PIMECKKALIEANGKLSKAEEILRIKLGKKILNI 262 (837)
Q Consensus 229 ~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk 262 (837)
+-.+-++||-.++.|+++|+.||+++..++..|+
T Consensus 45 ~e~~i~eal~~~~fDvekAl~~Ll~~~~~~~~~~ 78 (79)
T PF08938_consen 45 PEEQIKEALWHYYFDVEKALDYLLSKFKKKKPKK 78 (79)
T ss_dssp -CCHHHHHHHHTTT-CCHHHHHHHHCCHSSS---
T ss_pred CHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCC
Confidence 7788999999999999999999999876655544
No 157
>PRK11382 frlB fructoselysine-6-P-deglycase; Provisional
Probab=54.19 E-value=1.7e+02 Score=32.61 Aligned_cols=94 Identities=15% Similarity=0.038 Sum_probs=52.8
Q ss_pred CCCEEEEecCC----CcchHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCCcchhhhh-hhhhhchhhhhcccchhh
Q psy13351 149 IPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAKSIA-LYTKGIVDAFLDAKTVGE 221 (837)
Q Consensus 149 ~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~~s~~si~-~~~~~l~~ai~~g~~v~~ 221 (837)
.-+++|+++.. +-..+++.|+..|.|||+|++...+| +..||.|+.+-....... +.+..+.-+...+..
T Consensus 92 ~~~lvI~iS~SGeT~e~i~al~~ak~~Ga~~I~IT~~~~S~L~~~ad~~l~~~ag~~~~~~~~~~~~~~~~~~~~~~--- 168 (340)
T PRK11382 92 DRCAVIGVSDYGKTEEVIKALELGRACGALTAAFTKRADSPITSAAEFSIDYQADCIWEIHLLLCYSVVLEMITRLA--- 168 (340)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChHHHhCCEEEEeCCCchHHHHHHHHHHHHHHHHhcCC---
Confidence 34677777543 23456788888899999998775555 468888888743311111 111122112211110
Q ss_pred hhcccCCChHHHHHHHHHhhccHHHHHH
Q psy13351 222 LRSKTLAPIMECKKALIEANGKLSKAEE 249 (837)
Q Consensus 222 lr~~t~~~~~~~k~al~~~~~d~~~A~~ 249 (837)
......++.++|.....-++++++
T Consensus 169 ----~~~~~~~~~~~l~~l~~~i~~~~~ 192 (340)
T PRK11382 169 ----PNAEIGKIKNDLKQLPNALGHLVR 192 (340)
T ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 112345666777777766666665
No 158
>PRK11302 DNA-binding transcriptional regulator HexR; Provisional
Probab=51.92 E-value=1e+02 Score=32.99 Aligned_cols=47 Identities=9% Similarity=-0.011 Sum_probs=31.6
Q ss_pred CCCCEEEEecCCC----cchHHHHHhhcCCCEEEEecCCCCCC-cceEEccC
Q psy13351 148 IIPDAIFIIDVGY----HKGAVSEAIKLNIPIIGVVDTNHSPD-GINYVIPG 194 (837)
Q Consensus 148 ~~P~~vii~~~~~----~~~ai~Ea~~l~IP~i~l~Dtn~~~~-~i~ypIP~ 194 (837)
..-|++|+++... -..+++.|...|.|||+|++.+++.. ..|+.|+.
T Consensus 174 ~~~D~vI~iS~sG~t~~~~~~~~~ak~~g~~vI~IT~~~s~l~~~ad~~l~~ 225 (284)
T PRK11302 174 SDGDVVVLISHTGRTKSLVELAQLARENGATVIAITSAGSPLAREATLALTL 225 (284)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEECCCCChhHHhCCEEEec
Confidence 3568888886442 23466889999999999998554332 34565543
No 159
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=51.91 E-value=77 Score=31.09 Aligned_cols=75 Identities=15% Similarity=0.170 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 760 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 760 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
+.|++.+..--..+++.+......+.++.+.+++.++.. .+-++-....++..+.+.++.-++++.+.+..+++|
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i 127 (156)
T CHL00118 52 DERKEYIRKNLTKASEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQL 127 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444466666655555555555555543311 233333444555555555555555555555555544
No 160
>PRK13937 phosphoheptose isomerase; Provisional
Probab=50.49 E-value=2.4e+02 Score=28.43 Aligned_cols=31 Identities=19% Similarity=0.204 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEecchhhH
Q psy13351 39 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQAR 69 (837)
Q Consensus 39 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~ 69 (837)
...|..|+.-+.....++++|.|+|......
T Consensus 21 ~~~l~~aa~~i~~~l~~a~rI~i~G~G~S~~ 51 (188)
T PRK13937 21 LEAIAKVAEALIEALANGGKILLCGNGGSAA 51 (188)
T ss_pred HHHHHHHHHHHHHHHHCCCEEEEEeCcHhHH
Confidence 4678888888888889999999999988654
No 161
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=50.39 E-value=26 Score=35.00 Aligned_cols=59 Identities=19% Similarity=0.191 Sum_probs=38.6
Q ss_pred EeeccCccccCCCC-CCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHc
Q psy13351 570 KATKVDGIYNSDPN-KCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 638 (837)
Q Consensus 570 ilTDVdGVy~~dP~-~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~ 638 (837)
+..|||||+|++-- ..+++......+ ..|..++..+.+.|+++.|+++.....+...+.
T Consensus 10 ~v~d~dGv~tdg~~~~~~~g~~~~~~~----------~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~ 69 (169)
T TIGR02726 10 VILDVDGVMTDGRIVINDEGIESRNFD----------IKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAE 69 (169)
T ss_pred EEEeCceeeECCeEEEcCCCcEEEEEe----------cchHHHHHHHHHCCCEEEEEECCCcHHHHHHHH
Confidence 36799999986411 112333333332 346678889899999999998877666666654
No 162
>PRK06904 replicative DNA helicase; Validated
Probab=49.65 E-value=1.3e+02 Score=35.30 Aligned_cols=73 Identities=14% Similarity=0.109 Sum_probs=47.8
Q ss_pred CCcCcccceeCCeeEe-----eHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHH-HHcCCCcccCcccCC
Q psy13351 18 KMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLGG 91 (837)
Q Consensus 18 ~m~~~i~g~r~g~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~G 91 (837)
.+..++.|.+.|--|+ ..-||...|.-|.+.... ++..++|++.--...+++..+. ..++..+ .++..|
T Consensus 210 ~LD~~t~Gl~~G~LiiIaarPg~GKTafalnia~~~a~~---~g~~Vl~fSlEMs~~ql~~Rlla~~s~v~~--~~i~~g 284 (472)
T PRK06904 210 DLDKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAMA---SEKPVLVFSLEMPAEQIMMRMLASLSRVDQ--TKIRTG 284 (472)
T ss_pred HHHHHHhccCCCcEEEEEeCCCCChHHHHHHHHHHHHHh---cCCeEEEEeccCCHHHHHHHHHHhhCCCCH--HHhccC
Confidence 3444566777664444 678998887777665432 4678999988888877777654 3445443 246667
Q ss_pred -CCCC
Q psy13351 92 -LLTN 95 (837)
Q Consensus 92 -~LTN 95 (837)
.||+
T Consensus 285 ~~l~~ 289 (472)
T PRK06904 285 QNLDQ 289 (472)
T ss_pred CCCCH
Confidence 7875
No 163
>PRK15408 autoinducer 2-binding protein lsrB; Provisional
Probab=47.56 E-value=4.3e+02 Score=29.26 Aligned_cols=44 Identities=20% Similarity=0.286 Sum_probs=30.6
Q ss_pred CCCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCCCCCcceEEc
Q psy13351 148 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVI 192 (837)
Q Consensus 148 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypI 192 (837)
+-+|.|++.....+ ..++++|...|||+|.+ |++.+++...+-|
T Consensus 79 ~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~-d~~~~~~~~~~~V 124 (336)
T PRK15408 79 QGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTW-DSDTKPECRSYYI 124 (336)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEe-CCCCCCccceEEE
Confidence 47898888744444 57899999999999985 5554444444444
No 164
>PRK08006 replicative DNA helicase; Provisional
Probab=47.27 E-value=2e+02 Score=33.77 Aligned_cols=75 Identities=12% Similarity=0.116 Sum_probs=49.6
Q ss_pred CCCcCcccceeCCeeEe-----eHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHH-cCCCcccCcccC
Q psy13351 17 PKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVR-AGMPFIDQRWLG 90 (837)
Q Consensus 17 p~m~~~i~g~r~g~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~-~~~~~v~~rw~~ 90 (837)
+.+..++-|.+.|--|+ ..-||...|.-|.++.. .++..++|++.--....++..+... ++..+ .++..
T Consensus 212 ~~LD~~~~Gl~~G~LiiIaarPgmGKTafalnia~~~a~---~~g~~V~~fSlEM~~~ql~~Rlla~~~~v~~--~~i~~ 286 (471)
T PRK08006 212 DDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLCENAAM---LQDKPVLIFSLEMPGEQIMMRMLASLSRVDQ--TRIRT 286 (471)
T ss_pred HHHHHhhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---hcCCeEEEEeccCCHHHHHHHHHHHhcCCCH--HHhhc
Confidence 45556677877764444 67899998888777643 2467899998877777777665433 44433 24556
Q ss_pred CCCCCh
Q psy13351 91 GLLTNF 96 (837)
Q Consensus 91 G~LTN~ 96 (837)
|.||+.
T Consensus 287 ~~l~~~ 292 (471)
T PRK08006 287 GQLDDE 292 (471)
T ss_pred CCCCHH
Confidence 888853
No 165
>PRK11070 ssDNA exonuclease RecJ; Provisional
Probab=47.09 E-value=1.3e+02 Score=36.22 Aligned_cols=105 Identities=18% Similarity=0.223 Sum_probs=71.3
Q ss_pred eHHHHHHHHHHHHHHHHHhccCCCeEEEEecch----hhHHHHHHHHHHcCC----CcccCcccCCCCCChHHHHHHHHH
Q psy13351 34 NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKR----QARGVIANEAVRAGM----PFIDQRWLGGLLTNFKTIKTSIQR 105 (837)
Q Consensus 34 nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~----~~~~~v~~~a~~~~~----~~v~~rw~~G~LTN~~~i~~~i~~ 105 (837)
|+ ..+.-+.+|...|.....++.+|+++|--. .+..++.++..+.|. +||-+|...|-=-|...+ .+
T Consensus 48 ~P-~~l~~m~~a~~ri~~ai~~~e~I~I~gDyD~DGitstail~~~L~~~g~~~~~~~IP~R~~eGYGl~~~~i----~~ 122 (575)
T PRK11070 48 PW-QQLSGIEKAVELLYNALREGTRIIVVGDFDADGATSTALSVLALRSLGCSNVDYLVPNRFEDGYGLSPEVV----DQ 122 (575)
T ss_pred Ch-HHhhCHHHHHHHHHHHHHCCCEEEEEEecCccHHHHHHHHHHHHHHcCCCceEEEeCCCCcCCCCCCHHHH----HH
Confidence 44 456778889999988889999999998766 456666777788876 456555544432332211 11
Q ss_pred HHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC-CcchHHHHHhhcCCCEEEEecCCC
Q psy13351 106 LKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG-YHKGAVSEAIKLNIPIIGVVDTNH 183 (837)
Q Consensus 106 ~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~-~~~~ai~Ea~~l~IP~i~l~Dtn~ 183 (837)
+. ..-++++|.+|.. .+..++..|+.+||.||- +|=..
T Consensus 123 ------------------------------~~---------~~~~~LiItvD~Gi~~~e~i~~a~~~gidvIV-tDHH~ 161 (575)
T PRK11070 123 ------------------------------AH---------ARGAQLIVTVDNGISSHAGVAHAHALGIPVLV-TDHHL 161 (575)
T ss_pred ------------------------------HH---------hcCCCEEEEEcCCcCCHHHHHHHHHCCCCEEE-ECCCC
Confidence 11 1246789999876 667799999999999874 46543
No 166
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=46.85 E-value=35 Score=31.74 Aligned_cols=50 Identities=20% Similarity=0.216 Sum_probs=35.1
Q ss_pred CCCCEEEEecCC----CcchHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCCc
Q psy13351 148 IIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDD 197 (837)
Q Consensus 148 ~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~~ 197 (837)
...|++|+++.. +-..+++.|+..|.|+|+|++...+| +..|+.++....
T Consensus 46 ~~~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~~~~ 101 (120)
T cd05710 46 TEKSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLADYVIVYGFE 101 (120)
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCCEEEEccCC
Confidence 356888888654 33456788889999999999876554 235666665544
No 167
>PF02845 CUE: CUE domain; InterPro: IPR003892 This domain may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two proteins of the IL-1 signal transduction pathway, tollip and TAB2.; GO: 0005515 protein binding; PDB: 2EKF_A 1OTR_A 1P3Q_Q 1MN3_A 1WGL_A 2EJS_A 2DAE_A 2DHY_A 2DI0_A.
Probab=46.73 E-value=27 Score=26.15 Aligned_cols=34 Identities=18% Similarity=0.055 Sum_probs=25.6
Q ss_pred hhhhccc-CCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 220 GELRSKT-LAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 220 ~~lr~~t-~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
..|++.. ..+...-+.+|.+++||+|.|++.|-+
T Consensus 6 ~~L~~mFP~~~~~~I~~~L~~~~~~ve~ai~~LL~ 40 (42)
T PF02845_consen 6 QQLQEMFPDLDREVIEAVLQANNGDVEAAIDALLE 40 (42)
T ss_dssp HHHHHHSSSS-HHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 3344433 467788899999999999999998854
No 168
>PRK08506 replicative DNA helicase; Provisional
Probab=46.08 E-value=94 Score=36.43 Aligned_cols=84 Identities=15% Similarity=0.274 Sum_probs=55.0
Q ss_pred CCCcCcccceeCC-eeEe----eHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHH-HHcCCCcccCcccC
Q psy13351 17 PKMSSYIFGHRNK-IHII----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLG 90 (837)
Q Consensus 17 p~m~~~i~g~r~g-~~Ii----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~ 90 (837)
+.+..++-|.+.| +.|| ..-||...+.-|.+.+ .++.+++|++.--...+++..+. ..++..+ +++..
T Consensus 180 ~~LD~~~~G~~~G~LivIaarpg~GKT~fal~ia~~~~----~~g~~V~~fSlEMs~~ql~~Rlla~~s~v~~--~~i~~ 253 (472)
T PRK08506 180 VELNKMTKGFNKGDLIIIAARPSMGKTTLCLNMALKAL----NQDKGVAFFSLEMPAEQLMLRMLSAKTSIPL--QNLRT 253 (472)
T ss_pred HHHHhhcCCCCCCceEEEEcCCCCChHHHHHHHHHHHH----hcCCcEEEEeCcCCHHHHHHHHHHHhcCCCH--HHHhc
Confidence 3455566677776 4444 6789999998888754 46788999988887777777664 3455543 34667
Q ss_pred CCCCC--hHHHHHHHHHH
Q psy13351 91 GLLTN--FKTIKTSIQRL 106 (837)
Q Consensus 91 G~LTN--~~~i~~~i~~~ 106 (837)
|.|+. |..+.....++
T Consensus 254 ~~l~~~e~~~~~~a~~~l 271 (472)
T PRK08506 254 GDLDDDEWERLSDACDEL 271 (472)
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 88875 44443444333
No 169
>PF04413 Glycos_transf_N: 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase); InterPro: IPR007507 This is a domain found in proteins that transfer activated sugars to a variety of substrates, including glycogen, fructose-6-phosphate and lipopolysaccharides. Proteins bearing this domain transfer UDP, ADP, GDP or CMP linked sugars. This region is flanked at the N terminus by a signal peptide and at the C terminus by a glycosyl transferase group 1 domain (IPR001296 from INTERPRO). The eukaryotic glycogen synthases may be distant members of this bacterial family [].; GO: 0005529 sugar binding, 0016740 transferase activity, 0005975 carbohydrate metabolic process; PDB: 2XCI_A 2XCU_B.
Probab=45.86 E-value=91 Score=31.58 Aligned_cols=91 Identities=18% Similarity=0.181 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHhccC--CCeEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCc
Q psy13351 40 YMYEKAIRYIYQLGFS--KGTLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGS 117 (837)
Q Consensus 40 ~~L~~a~~~i~~~~~~--~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~ 117 (837)
-.+.-|..++..+..+ +-+||+-.+.+.+....++.... -+...++| +-.+..+++.+.++
T Consensus 32 GE~~a~~~Li~~l~~~~p~~~illT~~T~tg~~~~~~~~~~----~v~~~~~P--~D~~~~~~rfl~~~----------- 94 (186)
T PF04413_consen 32 GEVNAARPLIKRLRKQRPDLRILLTTTTPTGREMARKLLPD----RVDVQYLP--LDFPWAVRRFLDHW----------- 94 (186)
T ss_dssp HHHHHHHHHHHHHTT---TS-EEEEES-CCHHHHHHGG-GG----G-SEEE-----SSHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEecCCchHHHHHHhCCC----CeEEEEeC--ccCHHHHHHHHHHh-----------
Confidence 3445667777777665 56677766666666554433211 22233455 22333332332221
Q ss_pred cccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcchHHHHHhhcCCCEEEE
Q psy13351 118 IRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGV 178 (837)
Q Consensus 118 ~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l 178 (837)
.|+++|++...-=...+++|.+.|||++-+
T Consensus 95 -------------------------------~P~~~i~~EtElWPnll~~a~~~~ip~~Lv 124 (186)
T PF04413_consen 95 -------------------------------RPDLLIWVETELWPNLLREAKRRGIPVVLV 124 (186)
T ss_dssp ---------------------------------SEEEEES----HHHHHH-----S-EEEE
T ss_pred -------------------------------CCCEEEEEccccCHHHHHHHhhcCCCEEEE
Confidence 799999998888889999999999998755
No 170
>PRK10780 periplasmic chaperone; Provisional
Probab=45.23 E-value=2e+02 Score=28.39 Aligned_cols=87 Identities=14% Similarity=0.235 Sum_probs=58.1
Q ss_pred CeeEEeCCCCCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHH
Q psy13351 748 NIIYVSIPPLTKE--RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEIN 824 (837)
Q Consensus 748 ~~i~v~iP~~T~E--~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id 824 (837)
..-.|.+..+-.+ ..+..-+.+.+.+......+...+.+..+...++.+++ .+|+++....+++|+.....|-.+..
T Consensus 25 KIg~Vd~q~il~~~p~~k~~~~~le~~~~~~q~el~~~~~elq~~~~~~q~~~~~ms~~~~~~~~~el~~~~~~~q~~~~ 104 (165)
T PRK10780 25 KIAIVNMGSIFQQVPQRTGVSKQLENEFKGRASELQRMETDLQAKMQKLQRDGSTMKGSDRTKLEKDVMAQRQTFSQKAQ 104 (165)
T ss_pred CeEEeeHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444443222 24555677778888888899999999888888886654 58999988888888777666655554
Q ss_pred ---HHHHHHHhhh
Q psy13351 825 ---QLLINKEKEI 834 (837)
Q Consensus 825 ---~~~~~kekei 834 (837)
+-+..++.|+
T Consensus 105 ~~qq~~~~~~~e~ 117 (165)
T PRK10780 105 AFEQDRRRRSNEE 117 (165)
T ss_pred HHHHHHHHHHHHH
Confidence 2333444444
No 171
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=43.36 E-value=1.2e+02 Score=30.70 Aligned_cols=26 Identities=4% Similarity=0.079 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13351 769 IKNITEETKISIRKIRRDSNENLKKL 794 (837)
Q Consensus 769 ~k~~~e~~k~~iR~iR~~~~~~~kk~ 794 (837)
+.+.-+++...+++.|.++.+.+.+.
T Consensus 81 A~~~~~eye~~L~~Ar~EA~~ii~~A 106 (181)
T PRK13454 81 AVEAEKAYNKALADARAEAQRIVAET 106 (181)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444445555555554444443
No 172
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=42.90 E-value=45 Score=30.85 Aligned_cols=49 Identities=24% Similarity=0.303 Sum_probs=32.8
Q ss_pred CCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCCC----cceEEccCCCcc
Q psy13351 150 PDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD----GINYVIPGNDDS 198 (837)
Q Consensus 150 P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~~----~i~ypIP~N~~s 198 (837)
=|++|+++...+ ...+++|++.|.|+|+|++...+|- .+.+.+|.++..
T Consensus 54 ~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 54 DDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLADIVLYIPTGEES 110 (131)
T ss_dssp TEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSSEEEEEESSCGS
T ss_pred cceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCCEEEEecCCCcc
Confidence 366777764432 3456888999999999998765442 245666666655
No 173
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.54 E-value=50 Score=34.52 Aligned_cols=60 Identities=12% Similarity=0.119 Sum_probs=38.9
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCC-CcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~-~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
..+|.+|+..+..+...+.++...+||+|.+ |++... ..+.|.-+ |...+.+.....|.+
T Consensus 59 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~~v~~---d~~~~g~~~~~~l~~ 119 (270)
T cd06294 59 KRVDGFILLYSREDDPIIDYLKEEKFPFVVI-GKPEDDKENITYVDN---DNIQAGYDATEYLIK 119 (270)
T ss_pred cCcCEEEEecCcCCcHHHHHHHhcCCCEEEE-CCCCCCCCCCCeEEE---CcHHHHHHHHHHHHH
Confidence 3689999987666667789999999999987 544332 23444333 445555555555543
No 174
>PRK01919 tatB sec-independent translocase; Provisional
Probab=42.45 E-value=2.1e+02 Score=28.49 Aligned_cols=67 Identities=12% Similarity=0.223 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 759 KERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 759 ~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
.|+-=++++.+-+..-++|..+.+++.+..+++ ..||.++..+++|+..++.-..+.+-+..-++++
T Consensus 22 PekLP~~aRtlGk~i~k~Rr~~~d~K~ev~~E~---------e~dElrk~~~~~e~~~~~v~~si~~~~~~~~~~~ 88 (169)
T PRK01919 22 PERLPRVARTAGALFGRAQRYINDVKAEVSREI---------ELDELRKMKTDFESAARDVENTIHDNLSEHESDL 88 (169)
T ss_pred chHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 344556666666666677776666666655443 2366666666666666666666666666655554
No 175
>PF04007 DUF354: Protein of unknown function (DUF354); InterPro: IPR007152 Members of this family are around 350 amino acids in length. They are found in archaea and some bacteria and have no known function.
Probab=41.30 E-value=1.7e+02 Score=32.64 Aligned_cols=32 Identities=34% Similarity=0.395 Sum_probs=25.8
Q ss_pred CCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCC
Q psy13351 149 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNH 183 (837)
Q Consensus 149 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~ 183 (837)
.||+++-.. ...|.+=|.-+|||+|.++||..
T Consensus 83 ~pDv~is~~---s~~a~~va~~lgiP~I~f~D~e~ 114 (335)
T PF04007_consen 83 KPDVAISFG---SPEAARVAFGLGIPSIVFNDTEH 114 (335)
T ss_pred CCCEEEecC---cHHHHHHHHHhCCCeEEEecCch
Confidence 799888543 35677788999999999999854
No 176
>PRK13461 F0F1 ATP synthase subunit B; Provisional
Probab=41.17 E-value=1.4e+02 Score=29.20 Aligned_cols=74 Identities=14% Similarity=0.179 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 760 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 760 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
+|++.+.+. -..+++.+......+.++...+...++.. .+-++-....++..+.+.++.-++++.+.+..+++|
T Consensus 36 ~R~~~I~~~-l~~A~~~~~eA~~~~~e~~~~l~~a~~ea~~ii~~a~~~a~~~~~~i~~~A~~ea~~~~~~a~~~i 110 (159)
T PRK13461 36 SRQSEIDNK-IEKADEDQKKARELKLKNERELKNAKEEGKKIVEEYKSKAENVYEEIVKEAHEEADLIIERAKLEA 110 (159)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344333333 33345555555555555544444443211 123333444555555556666666666655555444
No 177
>PRK08404 V-type ATP synthase subunit H; Validated
Probab=41.16 E-value=2.5e+02 Score=25.63 Aligned_cols=60 Identities=22% Similarity=0.293 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13351 763 EEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 832 (837)
Q Consensus 763 ~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kek 832 (837)
++.++.+|+.=+++...|++.|+++..-+..... ..++..+.+.++--.+.+.++....+
T Consensus 2 ~e~i~~ik~aE~~~e~~L~~A~~Ea~~Ii~~Ak~----------~A~k~~~eii~eA~~eA~~ile~Ak~ 61 (103)
T PRK08404 2 EDVIKEIVKAEKEAEERIEKAKEEAKKIIRKAKE----------EAKKIEEEIIKKAEEEAQKLIEKKKK 61 (103)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777777888888888777665554422 33444444444444444444444333
No 178
>PRK08674 bifunctional phosphoglucose/phosphomannose isomerase; Validated
Probab=40.99 E-value=38 Score=37.76 Aligned_cols=63 Identities=13% Similarity=0.171 Sum_probs=43.4
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCCCc-------ceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPDG-------INYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~~~-------i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
...|++|+++..-+ ..+++.|...|+|+|+|++. +.... ..++||++.-+..|..+++..+..
T Consensus 77 ~~~dlvI~iS~SG~T~e~~~a~~~a~~~ga~vIaIT~~-~~L~~~a~~~~~~~i~ip~~~~~r~s~~~ll~~l~~ 150 (337)
T PRK08674 77 DEKTLVIAVSYSGNTEETLSAVEQALKRGAKIIAITSG-GKLKEMAKEHGLPVIIVPGGYQPRAALGYLFTPLLK 150 (337)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHCCCeEEEECCC-chHHHHHHhcCCeEEEeCCCCcchhhHHHHHHHHHH
Confidence 35678888865433 35678999999999999963 33322 278889888777776666655543
No 179
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=40.85 E-value=68 Score=29.72 Aligned_cols=48 Identities=19% Similarity=0.167 Sum_probs=33.4
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCCC--cceEEccCC
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPGN 195 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~ypIP~N 195 (837)
...|++|+++...+. .+++.|+..|+|+|+|.+...++- ..|+.|+..
T Consensus 59 ~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d~~i~~~ 112 (139)
T cd05013 59 TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLAKLADIVLLVS 112 (139)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcCEEEEcC
Confidence 357889988876443 366889999999999998665432 355555443
No 180
>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional
Probab=40.77 E-value=2.8e+02 Score=33.84 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=33.4
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC-CcceEEccCC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGN 195 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~-~~i~ypIP~N 195 (837)
...|++|+++...+ ..+++.|...|+|||+|+|.+++. ...|+.+|..
T Consensus 514 ~~~DvvI~iS~sG~t~e~i~~~~~Ak~~Ga~vIaIT~~~spLa~~aD~~L~~~ 566 (638)
T PRK14101 514 GKGDVIVAVSKSGRAPELLRVLDVAMQAGAKVIAITSSNTPLAKRATVALETD 566 (638)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEcCCCChhHhhCCEEEEcC
Confidence 45688888865433 356788889999999999975433 2456766653
No 181
>PRK08840 replicative DNA helicase; Provisional
Probab=40.01 E-value=2.9e+02 Score=32.28 Aligned_cols=75 Identities=12% Similarity=0.077 Sum_probs=50.4
Q ss_pred CCCcCcccceeCCeeEe-----eHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHH-HHcCCCcccCcccC
Q psy13351 17 PKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLG 90 (837)
Q Consensus 17 p~m~~~i~g~r~g~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~ 90 (837)
+.+..++-|.+.|-.|+ ..-||...|.-|.+... .++..++|++.--...+++..+. ..++..+ .++..
T Consensus 205 ~~LD~~~~G~~~g~LiviaarPg~GKTafalnia~~~a~---~~~~~v~~fSlEMs~~ql~~Rlla~~s~v~~--~~i~~ 279 (464)
T PRK08840 205 TDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAM---DQDKPVLIFSLEMPAEQLMMRMLASLSRVDQ--TKIRT 279 (464)
T ss_pred HHHHHhhcCCCCCceEEEEeCCCCchHHHHHHHHHHHHH---hCCCeEEEEeccCCHHHHHHHHHHhhCCCCH--HHHhc
Confidence 34555666777664444 77899988877776642 34678999988877777777654 4455443 35677
Q ss_pred CCCCCh
Q psy13351 91 GLLTNF 96 (837)
Q Consensus 91 G~LTN~ 96 (837)
|.||+.
T Consensus 280 ~~l~~~ 285 (464)
T PRK08840 280 GQLDDE 285 (464)
T ss_pred CCCCHH
Confidence 888853
No 182
>PF03480 SBP_bac_7: Bacterial extracellular solute-binding protein, family 7; InterPro: IPR018389 This family of proteins are involved in binding extracellular solutes for transport across the bacterial cytoplasmic membrane. This family includes a C4-dicarboxylate-binding protein DctP [, ] and the sialic acid-binding protein SiaP. The structure of the SiaP receptor has revealed an overall topology similar to ATP binding cassette ESR (extracytoplasmic solute receptors) proteins []. Upon binding of sialic acid, SiaP undergoes domain closure about a hinge region and kinking of an alpha-helix hinge component [].; GO: 0006810 transport, 0030288 outer membrane-bounded periplasmic space; PDB: 2HZK_C 2HZL_B 2HPG_C 2XWI_A 2XWK_A 2WX9_A 2CEY_A 2WYP_A 3B50_A 2CEX_B ....
Probab=39.84 E-value=1.3e+02 Score=32.49 Aligned_cols=64 Identities=14% Similarity=0.122 Sum_probs=51.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCCchhhHhHHHHHHHHHHHHHHH
Q psy13351 756 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK----ILSVDNEYRAQYDIQKLTDKFILE 822 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~----~~s~D~~~~~~~~iq~l~~~~~~~ 822 (837)
.|++|.|+.+.+.+.+........++....++.+.+.+ .+ .+|+++..+..+..+.+.+++.++
T Consensus 218 ~L~~e~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~G~~v~~~s~~~~~~~~~~~~~~~~e~~~~ 285 (286)
T PF03480_consen 218 SLPDEDQEALDDAADEAEARAREYYEAEDEEALKELEE---NGVTVVELSDEELAAWREAAAPVWEEFFEE 285 (286)
T ss_dssp HS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TT-EEEEGCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CcCEEeCCCHHHHHHHHHHHHHHHHHHhhc
Confidence 37899999999999999999998888888888776665 33 259999999999999999885543
No 183
>PRK00331 glucosamine--fructose-6-phosphate aminotransferase; Reviewed
Probab=39.78 E-value=55 Score=39.62 Aligned_cols=98 Identities=10% Similarity=0.027 Sum_probs=55.5
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCCc---------chhhhhhhhhhchhh
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDD---------SAKSIALYTKGIVDA 212 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~~---------s~~si~~~~~~l~~a 212 (837)
...|++|+++..-+ ..+++.|+..|+|||+|++...+| ...|+.|+.+.. +..+.-+++.+|.-.
T Consensus 335 ~~~dlvI~iS~SG~T~e~i~a~~~ak~~ga~~IaIT~~~~S~La~~aD~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~ 414 (604)
T PRK00331 335 SPKTLVIAISQSGETADTLAALRLAKELGAKTLAICNVPGSTIARESDAVLYTHAGPEIGVASTKAFTAQLAVLYLLALA 414 (604)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCcEEEecCcCccchhhhHHHHHHHHHHHHHHHH
Confidence 45678888865433 346788888999999999865544 346777765532 222222333333332
Q ss_pred hhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHH
Q psy13351 213 FLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEI 250 (837)
Q Consensus 213 i~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~ 250 (837)
+...+ ...+.....++.++|.+....++++++.
T Consensus 415 ~~~~~-----g~~~~~~~~~~~~~l~~l~~~~~~~~~~ 447 (604)
T PRK00331 415 LAKAR-----GTLSAEEEADLVHELRELPALIEQVLDL 447 (604)
T ss_pred HHHHc-----CCCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 21111 1112233456677777777677777553
No 184
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=39.48 E-value=64 Score=33.25 Aligned_cols=41 Identities=12% Similarity=0.306 Sum_probs=26.5
Q ss_pred CCEEEEe--cCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccC
Q psy13351 150 PDAIFII--DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPG 194 (837)
Q Consensus 150 P~~vii~--~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~ 194 (837)
.++||+. |+.-|..+..+|...|||+ |.-.+|++-||..|+
T Consensus 70 ~~lVi~at~d~~ln~~i~~~a~~~~ilv----n~~d~~e~~~f~~pa 112 (205)
T TIGR01470 70 AFLVIAATDDEELNRRVAHAARARGVPV----NVVDDPELCSFIFPS 112 (205)
T ss_pred cEEEEECCCCHHHHHHHHHHHHHcCCEE----EECCCcccCeEEEee
Confidence 4555443 2234578899999999995 333456666666664
No 185
>PLN02372 violaxanthin de-epoxidase
Probab=39.32 E-value=1.4e+02 Score=33.95 Aligned_cols=72 Identities=17% Similarity=0.284 Sum_probs=49.7
Q ss_pred CCcccHHHHHHHHHhcCCCcccee-cCCe------eEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13351 722 FEKEMSSIIKKAINEANLGLNPTI-QGNI------IYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKK 793 (837)
Q Consensus 722 ~d~~~~~~I~kaI~~s~l~~~p~~-~~~~------i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk 793 (837)
|+++.++.+++|..+.++.+.--. ..++ +--.+++--+|--+.++|.+....++--..++.+|+..++.++.
T Consensus 327 lP~~~~p~L~~Aa~kvG~df~~F~~tDNsCgpep~l~~~l~~~~e~~e~~i~~e~~~~~~e~~~~v~~~~~~~~~~~~~ 405 (455)
T PLN02372 327 LPESIVPELEKAAKKVGRDFSDFVRTDNTCGPEPPLLERLEKDVEEGEKTIVKEARQIEEELEKEVEKLGKEEESLFKR 405 (455)
T ss_pred CChhhhHHHHHHHHHcCCCHHHheeeCCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457899999999998888776542 2221 11122233345556677887777888888889999888877776
No 186
>PRK07004 replicative DNA helicase; Provisional
Probab=39.11 E-value=2.2e+02 Score=33.21 Aligned_cols=151 Identities=17% Similarity=0.194 Sum_probs=82.6
Q ss_pred CCcCcccceeCCeeEe-----eHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHH-HHcCCCcccCcccCC
Q psy13351 18 KMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLGG 91 (837)
Q Consensus 18 ~m~~~i~g~r~g~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~G 91 (837)
.+...+-|.+.|--|+ ..-||...+.-|.+... .++..++|++.--....++..+. ..++..+ .++..|
T Consensus 202 ~LD~~t~G~~~g~liviaarpg~GKT~~al~ia~~~a~---~~~~~v~~fSlEM~~~ql~~R~la~~~~v~~--~~i~~g 276 (460)
T PRK07004 202 DLDRMTSGMHGGELIIVAGRPSMGKTAFSMNIGEYVAV---EYGLPVAVFSMEMPGTQLAMRMLGSVGRLDQ--HRMRTG 276 (460)
T ss_pred HhcccccCCCCCceEEEEeCCCCCccHHHHHHHHHHHH---HcCCeEEEEeCCCCHHHHHHHHHHhhcCCCH--HHHhcC
Confidence 3444555666663333 67789887776665542 34778999988888877777764 3444332 345678
Q ss_pred CCCC--hHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecC------C---C
Q psy13351 92 LLTN--FKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDV------G---Y 160 (837)
Q Consensus 92 ~LTN--~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~------~---~ 160 (837)
.||. |..+...+.++... .-.++..+.-....+..+..++.+..++ +++| |+|- . .
T Consensus 277 ~l~~~e~~~~~~a~~~l~~~-----~l~I~d~~~~~~~~i~~~~r~l~~~~~~-------~~lv-iIDYLql~~~~~~~~ 343 (460)
T PRK07004 277 RLTDEDWPKLTHAVQKMSEA-----QLFIDETGGLNPMELRSRARRLARQCGK-------LGLI-IIDYLQLMSGSSQGE 343 (460)
T ss_pred CCCHHHHHHHHHHHHHHhcC-----CEEEECCCCCCHHHHHHHHHHHHHhCCC-------CCEE-EEChhhhccCCCCCC
Confidence 8874 44444444443221 1122333322233344445556554433 3443 3431 1 1
Q ss_pred cch-HH--------HHHhhcCCCEEEEecCCCCCC
Q psy13351 161 HKG-AV--------SEAIKLNIPIIGVVDTNHSPD 186 (837)
Q Consensus 161 ~~~-ai--------~Ea~~l~IP~i~l~Dtn~~~~ 186 (837)
++. .+ .=|..++||||+++=.|-...
T Consensus 344 ~r~~ei~~Isr~LK~lAkel~ipVi~lsQLnR~~e 378 (460)
T PRK07004 344 NRATEISEISRSLKSLAKELDVPVIALSQLNRGLE 378 (460)
T ss_pred cHHHHHHHHHHHHHHHHHHhCCeEEEEeccChhhh
Confidence 111 22 225678999999997776543
No 187
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=38.88 E-value=46 Score=34.62 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=39.2
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+-+|.+|+.....+...++++...|||+|.+ |++.+...++|..+ |...+.+..+..|.+
T Consensus 53 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~---d~~~~g~~~~~~l~~ 112 (266)
T cd06278 53 YRVDGVIVTSGTLSSELAEECRRNGIPVVLI-NRYVDGPGVDAVCS---DNYEAGRLAAELLLA 112 (266)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhcCCCEEEE-CCccCCCCCCEEEE---ChHHHHHHHHHHHHH
Confidence 4789888876655666788999999999997 55544445566444 334444555555543
No 188
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=38.45 E-value=1.7e+02 Score=28.48 Aligned_cols=31 Identities=19% Similarity=0.150 Sum_probs=15.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 804 NEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 804 ~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
-....+...+++.++.-.+++.+.+..+++|
T Consensus 79 a~~ea~~~~~~~~~~a~~ea~~~~~~a~~~i 109 (156)
T PRK05759 79 AKKRAAQIIEEAKAEAEAEAARIKAQAQAEI 109 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334445555555555555555555444443
No 189
>PRK08475 F0F1 ATP synthase subunit B; Validated
Probab=38.36 E-value=1.7e+02 Score=29.15 Aligned_cols=74 Identities=14% Similarity=0.102 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13351 760 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833 (837)
Q Consensus 760 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 833 (837)
+.|++.++.--..+++.+......+.++.+.++...+.. .+-++-....++..+.+.++.-.+++.+.+..+.+
T Consensus 52 ~~R~~~I~~~l~~Ae~~~~ea~~~~~e~e~~L~~Ar~eA~~Ii~~A~~eAe~~~~~ii~~A~~ea~~~~~~a~~~ 126 (167)
T PRK08475 52 KSRINKISKRLEEIQEKLKESKEKKEDALKKLEEAKEKAELIVETAKKEAYILTQKIEKQTKDDIENLIKSFEEL 126 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333455555555555555554444443211 13333344445555555555555555555544443
No 190
>PRK13455 F0F1 ATP synthase subunit B; Provisional
Probab=38.31 E-value=1.6e+02 Score=29.74 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 760 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 760 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
|.|++-+..--..+|+.+......+.++.+.+.+..... .+-++-....++..+++.++-..+++.+.+..+++|
T Consensus 57 ~~R~~~I~~~l~~Ae~~~~eA~~~l~e~e~~L~~A~~ea~~Ii~~A~~~a~~~~e~~~~~a~~ea~~~~~~A~~~I 132 (184)
T PRK13455 57 DKRAEGIRSELEEARALREEAQTLLASYERKQREVQEQADRIVAAAKDEAQAAAEQAKADLEASIARRLAAAEDQI 132 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433333355555555555555554444442211 122232333444444555555555555555554443
No 191
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=38.23 E-value=1.6e+02 Score=29.36 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 775 ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 775 ~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
+++..+.+.|.++.+-+... ....++..+.+.++--++++.+.+..+.+|
T Consensus 74 e~e~~L~~a~~ea~~ii~~A----------~~~a~~~~~~~~~~A~~ea~~~~~~a~~~I 123 (175)
T PRK14472 74 KNRELLAKADAEADKIIREG----------KEYAEKLRAEITEKAHTEAKKMIASAKEEI 123 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555555555444433 233344444444444444444444444433
No 192
>PRK14473 F0F1 ATP synthase subunit B; Provisional
Probab=38.11 E-value=1.7e+02 Score=28.88 Aligned_cols=29 Identities=10% Similarity=0.048 Sum_probs=14.1
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 806 YRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 806 ~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
...++..+.+.++.-++++.+.+..+++|
T Consensus 85 ~~a~~~~~~~l~~A~~ea~~~~~~a~~~I 113 (164)
T PRK14473 85 ERARAQEAEIIAQARREAEKIKEEARAQA 113 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444555555555555555444443
No 193
>PRK07353 F0F1 ATP synthase subunit B'; Validated
Probab=37.74 E-value=1.8e+02 Score=27.66 Aligned_cols=62 Identities=15% Similarity=0.085 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 773 TEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 773 ~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
+++.+...-....++.+.+....... .+-++-....++..+.+.++--++++.+.+..+.+|
T Consensus 48 Ae~~~~ea~~~~~~~e~~L~~a~~ea~~i~~~a~~~a~~~~~~~~~~a~~ea~~~~~~a~~~i 110 (140)
T PRK07353 48 AKERLAEAEKLEAQYEQQLASARKQAQAVIAEAEAEADKLAAEALAEAQAEAQASKEKARREI 110 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444432211 233344444555555555555555555555555444
No 194
>PLN02335 anthranilate synthase
Probab=37.51 E-value=88 Score=32.68 Aligned_cols=38 Identities=11% Similarity=0.036 Sum_probs=26.5
Q ss_pred HhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCcc
Q psy13351 51 QLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQRW 88 (837)
Q Consensus 51 ~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw 88 (837)
+-..++++||+|....+...-+.......|.....-+|
T Consensus 13 ~~~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~ 50 (222)
T PLN02335 13 NSSKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRN 50 (222)
T ss_pred cccCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEEC
Confidence 33567889999988777776677777777765544333
No 195
>PRK13608 diacylglycerol glucosyltransferase; Provisional
Probab=37.41 E-value=1.1e+02 Score=34.76 Aligned_cols=34 Identities=26% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCC
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTN 182 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn 182 (837)
..||+|+.+-|......++.+..++||++.+ -||
T Consensus 103 ~kPDvVi~~~p~~~~~~l~~~~~~~iP~~~v-~td 136 (391)
T PRK13608 103 EKPDLILLTFPTPVMSVLTEQFNINIPVATV-MTD 136 (391)
T ss_pred hCcCEEEECCcHHHHHHHHHhcCCCCCEEEE-eCC
Confidence 4899999988866555566777889999765 344
No 196
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=37.22 E-value=94 Score=30.29 Aligned_cols=49 Identities=10% Similarity=-0.000 Sum_probs=33.4
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCCC--cceEEccCCC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPGND 196 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~ypIP~N~ 196 (837)
+..|++|+++...+ ..+++.|+..|+|+|+|++...+|- ..|+.|...+
T Consensus 78 ~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~~s~l~~~ad~~l~~~~ 132 (154)
T TIGR00441 78 QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKDGGKMAGLADIELRVPH 132 (154)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCCEEEEeCC
Confidence 46788888875433 3566888999999999998654332 3555555444
No 197
>KOG1970|consensus
Probab=36.94 E-value=3.3e+02 Score=32.47 Aligned_cols=191 Identities=12% Similarity=0.083 Sum_probs=90.6
Q ss_pred cCCCeEEEEecchh--hHHHHHHHHHHcCCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhH
Q psy13351 54 FSKGTLLFVGTKRQ--ARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYR 131 (837)
Q Consensus 54 ~~~~~iLfv~t~~~--~~~~v~~~a~~~~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~ 131 (837)
..+++||.+..... -...|+-+|+..|..|+ .|..++.+-|...-.+-..+.. ...++.+.--|.+....
T Consensus 107 ~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~--Ew~Npi~~~~~~~~h~~t~~~~------~~~~s~L~~fesFler~ 178 (634)
T KOG1970|consen 107 KLGSRILLLTGPSGCGKSTTVKVLSKELGYQLI--EWSNPINLKEPENLHNETSFLM------FPYQSQLAVFESFLLRA 178 (634)
T ss_pred CCCceEEEEeCCCCCCchhHHHHHHHhhCceee--eecCCccccccccccccchhcc------cchhhHHHHHHHHHHHH
Confidence 34678999877764 55678889999988776 5998888777642111000000 00001111101111100
Q ss_pred HHHHHHHhhccccCCCCCCCEEEEecCC-C----cchHHHHHhhc-----CCCEEEEe-cCCCCCCcceEEccCCCcc--
Q psy13351 132 KQMKLNRVIGGIKNMNIIPDAIFIIDVG-Y----HKGAVSEAIKL-----NIPIIGVV-DTNHSPDGINYVIPGNDDS-- 198 (837)
Q Consensus 132 ~~~kl~~~~~g~~~~~~~P~~vii~~~~-~----~~~ai~Ea~~l-----~IP~i~l~-Dtn~~~~~i~ypIP~N~~s-- 198 (837)
.|.-.-..+-.++..-|.+++|-|-. . +....+|+..+ .+|+|=++ |+.++-....|-...+|-.
T Consensus 179 --~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~ 256 (634)
T KOG1970|consen 179 --TKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVLRLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEE 256 (634)
T ss_pred --HhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHHHHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhc
Confidence 11111122224556678888887732 2 33455555443 67865443 4443222222222222110
Q ss_pred hhhhhhhhhhchhhhhcccchhhhhcc----cC---CChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 199 AKSIALYTKGIVDAFLDAKTVGELRSK----TL---APIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 199 ~~si~~~~~~l~~ai~~g~~v~~lr~~----t~---~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.+...+-||=++..+....+..-+|.+ ++ -..++...--++++||+.-||.-|+=.
T Consensus 257 ~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~~i~~~s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 257 PRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVELICQGSGGDIRSAINSLQLS 319 (634)
T ss_pred cCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHHHHHHhcCccHHHHHhHhhhh
Confidence 011122233344444333332222221 11 113344444578899999999999865
No 198
>PRK14475 F0F1 ATP synthase subunit B; Provisional
Probab=36.48 E-value=1.8e+02 Score=28.81 Aligned_cols=75 Identities=8% Similarity=0.049 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 760 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 760 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
|.|++-+..--..+|+.|...-..+.++.+.+....... .+-++-....++..+.+.++--++.+.+.+..+.+|
T Consensus 40 e~R~~~I~~~l~~Ae~~k~eAe~~~~~~e~~L~~A~~ea~~Ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I 115 (167)
T PRK14475 40 DAYAAKIQAELDEAQRLREEAQALLADVKAEREEAERQAAAMLAAAKADARRMEAEAKEKLEEQIKRRAEMAERKI 115 (167)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444433333355555555555555555554443211 133333344455555555555556666666555554
No 199
>TIGR01135 glmS glucosamine--fructose-6-phosphate aminotransferase (isomerizing). The member from Methanococcus jannaschii contains an intein.
Probab=35.93 E-value=98 Score=37.49 Aligned_cols=98 Identities=9% Similarity=0.004 Sum_probs=53.6
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCCc---------chhhhhhhhhhchhh
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDD---------SAKSIALYTKGIVDA 212 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~~---------s~~si~~~~~~l~~a 212 (837)
...|++|+++..-+ ..+++.|+..|+|+|+|++...+| ...||.|+.+.. +..+.-+++.+|+..
T Consensus 337 ~~~dlvI~iS~SG~T~e~v~a~~~ak~~ga~~IaIT~~~~S~La~~ad~~l~~~~~~e~~~~~tks~~s~l~~l~lL~~~ 416 (607)
T TIGR01135 337 DKDTLVIAISQSGETADTLAALRLAKELGAKTLGICNVPGSTLVRESDHTLYTRAGPEIGVASTKAFTTQLTVLYLLALK 416 (607)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCChHHhhcCceEEecCCCccchhhhHHHHHHHHHHHHHHHH
Confidence 45678888865433 346788888899999998865444 346666665431 222222333333333
Q ss_pred hhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHH
Q psy13351 213 FLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEI 250 (837)
Q Consensus 213 i~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~ 250 (837)
+..... ..+.....++.++|.+....++++++.
T Consensus 417 l~~~~g-----~~~~~~~~~~~~~l~~l~~~~~~~~~~ 449 (607)
T TIGR01135 417 LAKARG-----TLSAEEEAELVDGLRRLPALVEQVLKL 449 (607)
T ss_pred HHHHcC-----CCCHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 221110 011123445666776666666666553
No 200
>PRK06569 F0F1 ATP synthase subunit B'; Validated
Probab=35.72 E-value=2.9e+02 Score=27.30 Aligned_cols=54 Identities=13% Similarity=0.204 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy13351 769 IKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 828 (837)
Q Consensus 769 ~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~ 828 (837)
..+...++|...+.||.++.+.+..- .+.+.+.++.++-++.++-++++..+.+
T Consensus 67 ye~~L~~Ar~eA~~I~~e~~~~~~a~------~~~~~~~~ea~L~~~~~~~~~~~~~~~~ 120 (155)
T PRK06569 67 YNEEIDKTNTEIDRLKKEKIDSLESE------FLIKKKNLEQDLKNSINQNIEDINLAAK 120 (155)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444555555555555544421 4667777888888888888877766554
No 201
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=35.62 E-value=1.9e+02 Score=28.85 Aligned_cols=28 Identities=25% Similarity=0.048 Sum_probs=14.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 807 RAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 807 ~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
..++..+.+.++--++++.+.+..+.+|
T Consensus 94 ea~~~~~~~~~~A~~ea~~~~~~a~~~i 121 (173)
T PRK13460 94 DALKLKNKLLEETNNEVKAQKDQAVKEI 121 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555444
No 202
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=35.21 E-value=1.9e+02 Score=29.92 Aligned_cols=22 Identities=18% Similarity=0.030 Sum_probs=9.5
Q ss_pred hhHhHHHHHHHHHHHHHHHHHH
Q psy13351 804 NEYRAQYDIQKLTDKFILEINQ 825 (837)
Q Consensus 804 ~~~~~~~~iq~l~~~~~~~id~ 825 (837)
....++++.+++..+.-.+++.
T Consensus 134 i~~~A~~eae~ii~~A~~~Ie~ 155 (205)
T PRK06231 134 LEKEANRQANLIIFQARQEIEK 155 (205)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444443
No 203
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=35.19 E-value=70 Score=33.25 Aligned_cols=58 Identities=12% Similarity=0.092 Sum_probs=36.7
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhc
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 209 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l 209 (837)
+.+|.+|+..+..+...+.++...+||+|.+ |+.......+|.-+ |...+.+.....|
T Consensus 58 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~l 115 (268)
T cd06271 58 GLVDGVIISRTRPDDPRVALLLERGFPFVTH-GRTELGDPHPWVDF---DNEAAAYQAVRRL 115 (268)
T ss_pred CCCCEEEEecCCCCChHHHHHHhcCCCEEEE-CCcCCCCCCCeEee---CcHHHHHHHHHHH
Confidence 3689899876655556678899999999976 65543334444433 3344445444444
No 204
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=34.94 E-value=1.3e+02 Score=32.27 Aligned_cols=85 Identities=15% Similarity=0.083 Sum_probs=50.9
Q ss_pred HHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH--------hc---cccchHHHHHHHHh-CCCCEEEEEc
Q psy13351 560 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS--------KK---LEIMDSTAFSFCRD-QKLPIRVFSI 627 (837)
Q Consensus 560 A~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~--------~G---~~v~~~~Aa~~a~~-~gi~v~I~ng 627 (837)
=..|+|+ +-++.||.-=+... - ..+.+.+...+-+.. +| |..+++.-+..+++ .+.|+++-+|
T Consensus 134 R~~l~a~-v~ilaDV~~kh~~~-l---~~~~~~~~~~~a~~~~~aDaviVtG~~TG~~~~~~~l~~vr~~~~~PVlvGSG 208 (254)
T PF03437_consen 134 RKRLGAD-VKILADVHVKHSSP-L---ATRDLEEAAKDAVERGGADAVIVTGKATGEPPDPEKLKRVREAVPVPVLVGSG 208 (254)
T ss_pred HHHcCCC-eEEEeeechhhccc-C---CCCCHHHHHHHHHHhcCCCEEEECCcccCCCCCHHHHHHHHhcCCCCEEEecC
Confidence 4678999 88899987544321 0 011122221111111 22 23455554444443 4589999999
Q ss_pred cCcchHHHHHc---CCccceEEEEe
Q psy13351 628 IKSGALKRVIE---GKNEGTLVYEI 649 (837)
Q Consensus 628 ~~~~~i~~al~---Ge~~GT~I~~~ 649 (837)
-.++|+.+.|. |--+||.|..+
T Consensus 209 vt~~Ni~~~l~~ADG~IVGS~~K~~ 233 (254)
T PF03437_consen 209 VTPENIAEYLSYADGAIVGSYFKKD 233 (254)
T ss_pred CCHHHHHHHHHhCCEEEEeeeeeeC
Confidence 99999998875 55579999865
No 205
>PTZ00295 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=34.66 E-value=93 Score=37.97 Aligned_cols=47 Identities=26% Similarity=0.191 Sum_probs=33.9
Q ss_pred CCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceEEccCC
Q psy13351 149 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGN 195 (837)
Q Consensus 149 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N 195 (837)
..|++|+++..-+ ..+++.|+..|+|||+|++...+| +..|+.|+.+
T Consensus 369 ~~~lvI~ISqSGeT~d~i~al~~ak~~Ga~~IaITn~~~S~La~~ad~~l~~~ 421 (640)
T PTZ00295 369 EDAGVIFISQSGETLDVVRALNLADELNLPKISVVNTVGSLIARSTDCGVYLN 421 (640)
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCCEEEEECCCCChhHHhcCEEEEeC
Confidence 4578888865433 457788899999999999876555 4577777653
No 206
>PF06518 DUF1104: Protein of unknown function (DUF1104); InterPro: IPR009488 This family consists of several hypothetical proteins of unknown function which appear to be found exclusively in Helicobacter pylori.; PDB: 2XRH_A.
Probab=34.63 E-value=1.4e+02 Score=26.77 Aligned_cols=60 Identities=25% Similarity=0.382 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHH
Q psy13351 758 TKERREEIVKLIKNITE-ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEI 823 (837)
Q Consensus 758 T~E~R~~l~k~~k~~~e-~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~i 823 (837)
=.+.+-|+-|+++++-. +++.--+..++.+.+.+.+ +|..|.+...++|.+-..+.++.+
T Consensus 23 ~~dy~~Ei~KR~~~m~~~~~k~f~~~~~~~~~kn~~~------ms~~e~~k~~~ev~k~~~~~~~~m 83 (93)
T PF06518_consen 23 VPDYKMEIHKRLKKMKEKEAKDFKKQFKEAARKNLSK------MSVEERKKRREEVRKALEKRIKKM 83 (93)
T ss_dssp HHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHTT------S-HHHHHHHHHHHHHHHHHT----
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHHHHHHHHHhc
Confidence 35889999999998877 7777777777777655544 588888888888887777755544
No 207
>PF07442 Ponericin: Ponericin; InterPro: IPR010002 This family contains a number of ponericin peptides (approximately 30 residues long) from the venom of the predatory ant Pachycondyla goeldii (Ponerine ant). These peptides exhibit antibacterial and insecticidal properties, and may adopt an amphipathic alpha-helical structure in polar environments such as cell membranes [].; GO: 0005576 extracellular region
Probab=34.41 E-value=36 Score=22.97 Aligned_cols=19 Identities=37% Similarity=0.065 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHh--hhhhhhh
Q psy13351 244 LSKAEEILRIKL--GKKILNI 262 (837)
Q Consensus 244 ~~~A~~~Lr~~g--~~~a~kk 262 (837)
+.+|-+||+++| +.||+-+
T Consensus 6 ~k~~~~wlkkkgpgi~kaal~ 26 (29)
T PF07442_consen 6 LKKAGEWLKKKGPGILKAALK 26 (29)
T ss_pred HHHHHHHHHhcCchHHHHHHH
Confidence 467889999995 6777644
No 208
>PF09851 SHOCT: Short C-terminal domain; InterPro: IPR018649 This family of hypothetical prokaryotic proteins has no known function.
Probab=34.19 E-value=57 Score=22.86 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=20.9
Q ss_pred HHHHHHhhhhcCCCCchhhHhHHHHH
Q psy13351 787 SNENLKKLLKNKILSVDNEYRAQYDI 812 (837)
Q Consensus 787 ~~~~~kk~~k~~~~s~D~~~~~~~~i 812 (837)
.+..++.+..+|.||+++..+..++|
T Consensus 4 ~L~~L~~l~~~G~IseeEy~~~k~~l 29 (31)
T PF09851_consen 4 RLEKLKELYDKGEISEEEYEQKKARL 29 (31)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 45677888888999999998877765
No 209
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=34.19 E-value=2e+02 Score=29.70 Aligned_cols=58 Identities=5% Similarity=-0.003 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 772 ITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLIN 829 (837)
Q Consensus 772 ~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~ 829 (837)
..++++..|...|.++.+-+....+.. ...+.....++++++++.++--++|+..-..
T Consensus 106 ~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I~~ek~~ 164 (204)
T PRK09174 106 AVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARIAAIKAK 164 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555554444332211 1223334444444444444444444443333
No 210
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=34.05 E-value=2.1e+02 Score=28.55 Aligned_cols=77 Identities=18% Similarity=0.277 Sum_probs=32.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 757 LTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 757 ~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
+=.+|++.+.+.... +++.+...-....++...+.+..+.. .+-++-....++..+.+.++--++++.+.+..+.+|
T Consensus 47 ~l~~R~~~I~~~l~~-A~~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i 124 (174)
T PRK07352 47 ILEERREAILQALKE-AEERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADL 124 (174)
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555544443332 44444444444444444443332211 122233334444455555555555555555544443
No 211
>PRK13428 F0F1 ATP synthase subunit delta; Provisional
Probab=33.96 E-value=1.5e+02 Score=34.42 Aligned_cols=74 Identities=7% Similarity=0.088 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 761 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 761 ~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
.|++.++.--..+|+++..+...+.++.+.+.+.+++. .|-++-....++..+.+.++--++++.+.+..+++|
T Consensus 32 ~R~~~I~~~L~eAe~a~~ea~~~~~~~e~~L~~Ak~ea~~Ii~~A~~~A~~~~~~~~~~A~~ea~~i~~~a~~~I 106 (445)
T PRK13428 32 ARQDTVRQQLAESATAADRLAEADQAHTKAVEDAKAEAARVVEEAREDAERIAEQLRAQADAEAERIKVQGARQV 106 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444466666666666666655555553322 233444444555555555555555666555555444
No 212
>PRK14471 F0F1 ATP synthase subunit B; Provisional
Probab=33.90 E-value=2.1e+02 Score=28.11 Aligned_cols=25 Identities=8% Similarity=0.113 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13351 809 QYDIQKLTDKFILEINQLLINKEKE 833 (837)
Q Consensus 809 ~~~iq~l~~~~~~~id~~~~~keke 833 (837)
++..+.+.++--++++.+.+..+.+
T Consensus 88 ~~~~~~~~~~A~~ea~~~~~~a~~~ 112 (164)
T PRK14471 88 EKMIADAKEEAQVEGDKMIEQAKAS 112 (164)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444433
No 213
>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans
Probab=33.83 E-value=72 Score=33.23 Aligned_cols=58 Identities=16% Similarity=0.228 Sum_probs=36.5
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhc
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 209 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l 209 (837)
+-+|.+|+..+..+...++++...+||+|.+ |++.....+.|..+ | ...+....+..|
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~l~~~~ipvV~~-~~~~~~~~~~~v~~-d--~~~~~~~~~~~l 111 (265)
T cd06299 54 QRVDGIIVVPHEQSAEQLEDLLKRGIPVVFV-DREITGSPIPFVTS-D--PQPGMTEAVSLL 111 (265)
T ss_pred cCCCEEEEcCCCCChHHHHHHHhCCCCEEEE-ecccCCCCCCEEEE-C--cHHHHHHHHHHH
Confidence 4788888886655666789999999999976 55433333455443 2 234444444444
No 214
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=33.76 E-value=1.3e+02 Score=28.01 Aligned_cols=72 Identities=15% Similarity=0.178 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 763 EEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 763 ~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
++..+.+....+++...+.+.|.++.+-++...... .+-+.-....+++++.+.++...+++..-+...+++
T Consensus 43 ~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i~~e~~~a~~~l 115 (132)
T PF00430_consen 43 EELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEIEQEKEKAKKEL 115 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455666666666677777776665555443221 123344445556666666666666555544444443
No 215
>KOG0100|consensus
Probab=33.44 E-value=3.2e+02 Score=31.04 Aligned_cols=113 Identities=21% Similarity=0.256 Sum_probs=65.9
Q ss_pred cceeeeeeccCCceEEEecCC--cccHHHHHHHHHhcCC-CccceecC--------------------------C--eeE
Q psy13351 703 LLKIANITLFNSHTISIQPFE--KEMSSIIKKAINEANL-GLNPTIQG--------------------------N--IIY 751 (837)
Q Consensus 703 L~~lA~v~~~~~~~l~i~~~d--~~~~~~I~kaI~~s~l-~~~p~~~~--------------------------~--~i~ 751 (837)
=+|+=+....+..|+.|++|+ ..+.++- .-+-+-+| |+.|..-| + .|.
T Consensus 454 KSQvFsTa~DnQ~tV~I~vyEGER~mtkdn-~lLGkFdltGipPAPRGvpqIEVtFevDangiL~VsAeDKgtg~~~kit 532 (663)
T KOG0100|consen 454 KSQVFSTAQDNQPTVTIQVYEGERPMTKDN-HLLGKFDLTGIPPAPRGVPQIEVTFEVDANGILQVSAEDKGTGKKEKIT 532 (663)
T ss_pred ccceeeecccCCceEEEEEeeccccccccc-cccccccccCCCCCCCCCccEEEEEEEccCceEEEEeeccCCCCcceEE
Confidence 557777777788888888885 4444432 11222222 33332211 1 222
Q ss_pred Ee--CCCCCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhc-----CCCCchhhHhHHHHHHHHH
Q psy13351 752 VS--IPPLTKERREEIVKLIKNITEETKI-----SIRKIRRDSNENLKKLLKN-----KILSVDNEYRAQYDIQKLT 816 (837)
Q Consensus 752 v~--iP~~T~E~R~~l~k~~k~~~e~~k~-----~iR~iR~~~~~~~kk~~k~-----~~~s~D~~~~~~~~iq~l~ 816 (837)
|. =-++|+|.-+.+++.|.+++|+-|. .-||-=..+--.+|....+ +.+++||...++.-++...
T Consensus 533 ItNd~~rLt~EdIerMv~eAekFAeeDk~~KekieaRN~LE~YayslKnqi~dkekLg~Kl~~edKe~~e~av~e~~ 609 (663)
T KOG0100|consen 533 ITNDKGRLTPEDIERMVNEAEKFAEEDKKLKEKIEARNELESYAYSLKNQIGDKEKLGGKLSDEDKETIEDAVEEAL 609 (663)
T ss_pred EecCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHhHHHHHHHHHHhhhccCchhHhcccCChhHHHHHHHHHHHHH
Confidence 22 2469999999999999999987553 4454444444444443222 2478888777666655443
No 216
>PRK05892 nucleoside diphosphate kinase regulator; Provisional
Probab=33.20 E-value=2.4e+02 Score=27.79 Aligned_cols=68 Identities=13% Similarity=0.003 Sum_probs=53.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 755 PPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830 (837)
Q Consensus 755 P~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 830 (837)
..||+|-.+.|...+..+- ..|.+..+.++.....+.+||.-.+..-++=|...+..|..++..++..
T Consensus 6 ~~lT~eg~~~L~~EL~~L~--------~~r~~i~~~i~~Ar~~GDlsENaey~aak~~q~~~e~RI~~L~~~L~~A 73 (158)
T PRK05892 6 KGLAPAARDHLEAELARLR--------ARRDRLAVEVNDRGMIGDHGDQAEAIQRADELARLDDRINELDRRLRTG 73 (158)
T ss_pred CccCHHHHHHHHHHHHHHH--------HHhHHHHHHHHHHHhCCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3699999998888777652 2355555556655566779999999999999999999999999998854
No 217
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=33.17 E-value=2.2e+02 Score=28.43 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=11.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q psy13351 773 TEETKISIRKIRRDSNENLKKL 794 (837)
Q Consensus 773 ~e~~k~~iR~iR~~~~~~~kk~ 794 (837)
-++++..+++.|.++.+-+...
T Consensus 72 ~~e~e~~l~~a~~ea~~ii~~a 93 (173)
T PRK13453 72 EEENKQKLKETQEEVQKILEDA 93 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3345556666666655544444
No 218
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=33.14 E-value=28 Score=31.10 Aligned_cols=29 Identities=24% Similarity=0.260 Sum_probs=26.4
Q ss_pred ChHHHHHHHHHhhccHHHHHHHHHHHhhh
Q psy13351 229 PIMECKKALIEANGKLSKAEEILRIKLGK 257 (837)
Q Consensus 229 ~~~~~k~al~~~~~d~~~A~~~Lr~~g~~ 257 (837)
.+-||.+|-+|--.++++|.+-||+||..
T Consensus 62 tFnDcpeA~~eL~~eI~eAK~dLr~kGv~ 90 (91)
T PF08285_consen 62 TFNDCPEAAKELQKEIKEAKADLRKKGVD 90 (91)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 56789999999999999999999999963
No 219
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=32.98 E-value=80 Score=29.21 Aligned_cols=47 Identities=15% Similarity=0.089 Sum_probs=33.0
Q ss_pred CCCCEEEEecCC----CcchHHHHHhhcCCCEEEEecCCCCCC--cceEEccC
Q psy13351 148 IIPDAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSPD--GINYVIPG 194 (837)
Q Consensus 148 ~~P~~vii~~~~----~~~~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~ypIP~ 194 (837)
..-|++|+++-. +-..+++.|+..|+|||+|++...+|- ..|+.|+.
T Consensus 46 ~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad~~l~~ 98 (128)
T cd05014 46 TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLAKLSDVVLDL 98 (128)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchhhhCCEEEEC
Confidence 466888888643 234577899999999999998765442 35665543
No 220
>TIGR00587 nfo apurinic endonuclease (APN1). All proteins in this family for which functions are known are 5' AP endonculeases that are used in base excision repair and the repair of abasic sites in DNA.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=32.82 E-value=1.4e+02 Score=32.11 Aligned_cols=74 Identities=9% Similarity=0.071 Sum_probs=58.6
Q ss_pred eeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13351 705 KIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 778 (837)
Q Consensus 705 ~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~ 778 (837)
+-.|+-+.+|+.+.-.++++.....+.++..+.++.+.+..-.....+.+-.+.+|.|+.-++..++..+.|+.
T Consensus 26 ~~~qif~~~P~~w~~~~~~~~~~~~~~~~~~~~~~~~~~i~~Hapy~iNlas~~~~~r~~sv~~~~~~i~~A~~ 99 (274)
T TIGR00587 26 TAFMFFLKSPRWWRRPMLEEEVIDWFKAALETNKNLSQIVLVHAPYLINLASPDEEKEEKSLDVLDEELKRCEL 99 (274)
T ss_pred CEEEEEecCccccCCCCCCHHHHHHHHHHHHHcCCCCcceeccCCeeeecCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 45677888998888777888888888888888888877765444344888889999999999998888877665
No 221
>TIGR01461 greB transcription elongation factor GreB. The GreA and GreB transcription elongation factors enable to continuation of RNA transcription past template-encoded arresting sites. Among the Proteobacteria, distinct clades of GreA and GreB are found. GreB differs functionally in that it releases larger oligonucleotides. This model describes proteobacterial GreB.
Probab=32.68 E-value=1.7e+02 Score=28.89 Aligned_cols=69 Identities=14% Similarity=0.108 Sum_probs=52.2
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 755 PPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830 (837)
Q Consensus 755 P~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 830 (837)
+.||+|-.+.|.+.+..+-. .-|.+..+.|+.....+.+||+..+.+-++-|...+..+..++..++..
T Consensus 3 ~~lT~~G~~~L~~El~~L~~-------~~r~~~~~~i~~Ar~~GDlsENaeY~aak~~~~~le~rI~~L~~~L~~A 71 (156)
T TIGR01461 3 PLITPEGYEKLKQELNYLWR-------EERPEVTQKVTWAASLGDRSENADYQYGKKRLREIDRRVRFLTKRLENL 71 (156)
T ss_pred cccCHHHHHHHHHHHHHHHh-------cccHHHHHHHHHHHHcCCcchhhhhHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 46899999988877766421 2344445555555556779999999999999999999999999988753
No 222
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=32.59 E-value=88 Score=32.62 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=39.8
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
..+|.+|++.+..+...++++...+||+|.+ |+..+...+.|... |...+.......|.+
T Consensus 54 ~~vdgiii~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~v~~---d~~~~~~~~~~~l~~ 113 (268)
T cd06273 54 RGVDGLALIGLDHSPALLDLLARRGVPYVAT-WNYSPDSPYPCVGF---DNREAGRLAARHLIA 113 (268)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-cCCCCCCCCCEEEe---ChHHHHHHHHHHHHH
Confidence 3679999987766778889999999999997 44333333445433 445555655555544
No 223
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=32.08 E-value=2e+02 Score=31.55 Aligned_cols=45 Identities=13% Similarity=0.144 Sum_probs=32.0
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCCC--cceEEc
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--GINYVI 192 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~ypI 192 (837)
...|++|+++-..+ ..+++.|+..|+|||+|.+...+|- ..||.+
T Consensus 88 ~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vI~iT~~~~s~la~~ad~~l 138 (321)
T PRK11543 88 ESRDVMLFISYSGGAKELDLIIPRLEDKSIALLAMTGKPTSPLGLAAKAVL 138 (321)
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEE
Confidence 46788988875433 3466889999999999998765442 245544
No 224
>TIGR00661 MJ1255 conserved hypothetical protein. This model represents nearly the full length of MJ1255 from Methanococcus jannaschii and of an unpublished protein from Vibrio cholerae, as well as the C-terminal half of a protein from Methanobacterium thermoautotrophicum. A small region (~50 amino acids) within the domain appears related to a family of sugar transferases.
Probab=32.06 E-value=3.2e+02 Score=29.85 Aligned_cols=29 Identities=31% Similarity=0.444 Sum_probs=22.8
Q ss_pred CCCEEEEecCCCcchHHHHHhhcCCCEEEEec
Q psy13351 149 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180 (837)
Q Consensus 149 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~D 180 (837)
.||+||.. .+..+..-|..++||+|.+.+
T Consensus 93 ~pDlVi~d---~~~~~~~aA~~~~iP~i~i~~ 121 (321)
T TIGR00661 93 NPDLIISD---FEYSTVVAAKLLKIPVICISN 121 (321)
T ss_pred CCCEEEEC---CchHHHHHHHhcCCCEEEEec
Confidence 79987644 444557789999999999976
No 225
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=32.02 E-value=89 Score=30.84 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=28.6
Q ss_pred CCCCEEEEecCCCcch---HHHHHhhc-CCCEEEEe-cCCC-CCCc
Q psy13351 148 IIPDAIFIIDVGYHKG---AVSEAIKL-NIPIIGVV-DTNH-SPDG 187 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~---ai~Ea~~l-~IP~i~l~-Dtn~-~~~~ 187 (837)
..||+||.+-|-.... .+++...+ ++|+++++ |-++ .+.+
T Consensus 88 ~~PD~IIsThp~~~~~~l~~lk~~~~~~~~p~~tvvTD~~~~H~~W 133 (169)
T PF06925_consen 88 FQPDLIISTHPFPAQVPLSRLKRRGRLPNIPVVTVVTDFDTVHPFW 133 (169)
T ss_pred cCCCEEEECCcchhhhHHHHHHHhhcccCCcEEEEEcCCCCCCcCe
Confidence 4999999999975555 25677777 89998776 5543 4444
No 226
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=31.62 E-value=84 Score=32.64 Aligned_cols=59 Identities=17% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhch
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 210 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~ 210 (837)
.-+|.+|+..+..+..+++++...+||+|.+ |++.+...+.|.- .|..++-+..+..|.
T Consensus 54 ~~~dgiii~~~~~~~~~l~~~~~~~ipvV~~-~~~~~~~~~~~v~---~d~~~~g~~~~~~l~ 112 (267)
T cd06283 54 YQVDGLIVNPTGNNKELYQRLAKNGKPVVLV-DRKIPELGVDTVT---LDNYEAAKEAVDHLI 112 (267)
T ss_pred cCcCEEEEeCCCCChHHHHHHhcCCCCEEEE-cCCCCCCCCCEEE---eccHHHHHHHHHHHH
Confidence 4679898887665666789999999999997 5544333344433 233555566655554
No 227
>PRK08476 F0F1 ATP synthase subunit B'; Validated
Probab=31.52 E-value=2.7e+02 Score=26.85 Aligned_cols=11 Identities=18% Similarity=0.480 Sum_probs=4.5
Q ss_pred HHHHHHHHHHH
Q psy13351 778 ISIRKIRRDSN 788 (837)
Q Consensus 778 ~~iR~iR~~~~ 788 (837)
..+++.|.++.
T Consensus 66 ~~l~~Ar~eA~ 76 (141)
T PRK08476 66 TILKNAREEAN 76 (141)
T ss_pred HHHHHHHHHHH
Confidence 34444444433
No 228
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=31.51 E-value=64 Score=33.76 Aligned_cols=60 Identities=12% Similarity=0.067 Sum_probs=38.7
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+..+..+...++++...|||+|.+ |++.+....++. ..|...+.+.....|..
T Consensus 54 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v---~~d~~~~~~~~~~~l~~ 113 (268)
T cd06270 54 RRCDALILHSKALSDDELIELAAQVPPLVLI-NRHIPGLADRCI---WLDNEQGGYLATEHLIE 113 (268)
T ss_pred cCCCEEEEecCCCCHHHHHHHhhCCCCEEEE-eccCCCCCCCeE---EECcHHHHHHHHHHHHH
Confidence 4789999886554444489999999999988 554433233332 24556666666666544
No 229
>PF03449 GreA_GreB_N: Transcription elongation factor, N-terminal; InterPro: IPR022691 Bacterial proteins greA and greB are necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. Arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked DNA/RNA/ polymerase ternary complexes. Cleavage of the nascent transcript by cleavage factors, such as greA or greB, allows the resumption of elongation from the new 3' terminus [, ]. Escherichia coli GreA and GreB are sequence homologues and have homologues in every known bacterial genome []. GreA induces cleavage two or three nucleotides behind the terminus and can only prevent the formation of arrested complexes while greB releases longer sequences up to eighteen nucleotides in length and can rescue preexisting arrested complexes. These functional differences correlate with a distinctive structural feature, the distribution of positively charged residues on one face of the N-terminal coiled coil. Remarkably, despite close functional similarity, the prokaryotic Gre factors have no sequence or structural similarity with eukaryotic TFIIS. ; GO: 0003677 DNA binding, 0032784 regulation of transcription elongation, DNA-dependent; PDB: 1GRJ_A 2EUL_C 3AOH_Y 3AOI_X 2F23_A 2ETN_C 2P4V_B.
Probab=31.32 E-value=3.3e+02 Score=23.27 Aligned_cols=66 Identities=23% Similarity=0.289 Sum_probs=51.0
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 757 LTKERREEIVKLIKNITEETKISIRK-IRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830 (837)
Q Consensus 757 ~T~E~R~~l~k~~k~~~e~~k~~iR~-iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 830 (837)
+|++..+.|.+.+..+ ++ -|-+..+.++.....|.+||+-.+..-++=|...+..|.+++..+...
T Consensus 6 lT~~g~~~L~~EL~~L--------~~~~rpe~~~~i~~Ar~~GDlsENaeY~aAke~q~~le~rI~~Le~~l~~a 72 (74)
T PF03449_consen 6 LTPEGYEKLQAELEHL--------KNVERPEIAEEIAEAREQGDLSENAEYHAAKERQAFLEARIRELEERLARA 72 (74)
T ss_dssp EEHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHCCSSSTSSHHHHHHHHHHHHHHHHHHHHHHHHHHE
T ss_pred cCHHHHHHHHHHHHHH--------HHhhhHHHHHHHHHHHHcCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 6788877777666553 33 334555666666677889999999999999999999999999988753
No 230
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=31.19 E-value=2.4e+02 Score=28.38 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 808 AQYDIQKLTDKFILEINQLLINKE 831 (837)
Q Consensus 808 ~~~~iq~l~~~~~~~id~~~~~ke 831 (837)
+++..+.+.++--++++.+.+..+
T Consensus 103 ae~~~~~il~~A~~ea~~~~~~a~ 126 (184)
T CHL00019 103 IEREKENLINQAKEDLERLENYKN 126 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444333
No 231
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=31.10 E-value=1.4e+02 Score=30.07 Aligned_cols=30 Identities=20% Similarity=0.361 Sum_probs=18.9
Q ss_pred CCCEEEEec----CCCc---chHHHHHhhcCCCEEEEe
Q psy13351 149 IPDAIFIID----VGYH---KGAVSEAIKLNIPIIGVV 179 (837)
Q Consensus 149 ~P~~vii~~----~~~~---~~ai~Ea~~l~IP~i~l~ 179 (837)
.||.||+.. |.++ ...+++ ...++|+.|||
T Consensus 43 ~~~~iilsgGP~~~~~~~~~~~~i~~-~~~~~PiLGIC 79 (191)
T PRK06774 43 APSHLVISPGPCTPNEAGISLAVIRH-FADKLPILGVC 79 (191)
T ss_pred CCCeEEEcCCCCChHhCCCchHHHHH-hcCCCCEEEEC
Confidence 688888773 2222 233443 45689999997
No 232
>COG0707 MurG UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase [Cell envelope biogenesis, outer membrane]
Probab=31.07 E-value=1.3e+02 Score=33.99 Aligned_cols=111 Identities=17% Similarity=0.096 Sum_probs=64.0
Q ss_pred HHHHHHHHHHhccCCC-eEEEEecchhhHHHHHHHHHHcCCCcccCcccCCCCC--ChHHHHHHHHHHHHHHHHhccCcc
Q psy13351 42 YEKAIRYIYQLGFSKG-TLLFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLT--NFKTIKTSIQRLKEMDLFITNGSI 118 (837)
Q Consensus 42 L~~a~~~i~~~~~~~~-~iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw~~G~LT--N~~~i~~~i~~~~~~~~~~~~~~~ 118 (837)
+.-|.-+...+..++- ++.+++|.......+.+.. ..--+++.-.|+++... |++.. ++.++
T Consensus 14 v~pAlAl~~~l~~~g~~~v~~~~~~~~~e~~l~~~~-~~~~~~I~~~~~~~~~~~~~~~~~---~~~~~----------- 78 (357)
T COG0707 14 VFPALALAEELAKRGWEQVIVLGTGDGLEAFLVKQY-GIEFELIPSGGLRRKGSLKLLKAP---FKLLK----------- 78 (357)
T ss_pred hhHHHHHHHHHHhhCccEEEEecccccceeeecccc-CceEEEEecccccccCcHHHHHHH---HHHHH-----------
Confidence 3445566666656555 6888888887655544433 22223454444443222 22221 11111
Q ss_pred ccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCC
Q psy13351 119 RKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPD 186 (837)
Q Consensus 119 ~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~ 186 (837)
-.++..++-+. ..||+||-+...---.+...|..++||++- ..+|.-|.
T Consensus 79 ----------~~~~a~~il~~--------~kPd~vig~Ggyvs~P~~~Aa~~~~iPv~i-hEqn~~~G 127 (357)
T COG0707 79 ----------GVLQARKILKK--------LKPDVVIGTGGYVSGPVGIAAKLLGIPVII-HEQNAVPG 127 (357)
T ss_pred ----------HHHHHHHHHHH--------cCCCEEEecCCccccHHHHHHHhCCCCEEE-EecCCCcc
Confidence 11122223333 289999999988888999999999999875 46666554
No 233
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=30.77 E-value=50 Score=30.56 Aligned_cols=53 Identities=11% Similarity=0.031 Sum_probs=35.6
Q ss_pred CCCCEEEEecCCC----cchHHHHHhhcCCCEEEEecCCCCCC-c------ceEEccCCCcchhh
Q psy13351 148 IIPDAIFIIDVGY----HKGAVSEAIKLNIPIIGVVDTNHSPD-G------INYVIPGNDDSAKS 201 (837)
Q Consensus 148 ~~P~~vii~~~~~----~~~ai~Ea~~l~IP~i~l~Dtn~~~~-~------i~ypIP~N~~s~~s 201 (837)
...|++|+++..- -..+++.|...|+|+|+|++ +.+.. . ..+++|.+...+-|
T Consensus 42 ~~~dl~I~iS~SG~t~e~i~~~~~a~~~g~~iI~IT~-~~~l~~~~~~~~~~~~~~p~~~~~r~s 105 (119)
T cd05017 42 DRKTLVIAVSYSGNTEETLSAVEQAKERGAKIVAITS-GGKLLEMAREHGVPVIIIPKGLQPRAA 105 (119)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEeC-CchHHHHHHHcCCcEEECCCCCCCcee
Confidence 4668888887553 23466788889999999985 33222 1 34778887765544
No 234
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=30.72 E-value=55 Score=30.25 Aligned_cols=38 Identities=11% Similarity=0.005 Sum_probs=28.4
Q ss_pred CCCCEEEEecCC-C---cchHHHHHhhcCCCEEEEecCCCCC
Q psy13351 148 IIPDAIFIIDVG-Y---HKGAVSEAIKLNIPIIGVVDTNHSP 185 (837)
Q Consensus 148 ~~P~~vii~~~~-~---~~~ai~Ea~~l~IP~i~l~Dtn~~~ 185 (837)
...|++|++... + -..++++|+..|+|+|+|++...+|
T Consensus 45 ~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~ 86 (126)
T cd05008 45 DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGST 86 (126)
T ss_pred CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCCh
Confidence 467888888644 2 2356789999999999999976554
No 235
>cd06325 PBP1_ABC_uncharacterized_transporter Type I periplasmic ligand-binding domain of uncharacterized ABC-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type transport systems that are predicted to be involved in the uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); its ligand specificity has not been determined experimentally.
Probab=30.70 E-value=2.1e+02 Score=30.02 Aligned_cols=58 Identities=21% Similarity=0.198 Sum_probs=33.8
Q ss_pred CCEEEEecCCCcchHHHHHhh----cCCCEEEEecCC-CCCCcceEEccCCCcchhhhhhhhh
Q psy13351 150 PDAIFIIDVGYHKGAVSEAIK----LNIPIIGVVDTN-HSPDGINYVIPGNDDSAKSIALYTK 207 (837)
Q Consensus 150 P~~vii~~~~~~~~ai~Ea~~----l~IP~i~l~Dtn-~~~~~i~ypIP~N~~s~~si~~~~~ 207 (837)
||.||+.+-..-..+++.+.. .+||++|+-|+. ..|.+.++..|...-...+..++..
T Consensus 185 ~dai~~~~d~~a~~~~~~~~~~~~~~~ipvig~d~~~~~~~~l~tv~~~~~~~G~~a~~~l~~ 247 (281)
T cd06325 185 VDAIYVPTDNTVASAMEAVVKVANEAKIPVIASDDDMVKRGGLATYGIDYYELGRQTGKMAAK 247 (281)
T ss_pred CCEEEEcCchhHHhHHHHHHHHHHHcCCCEEEcCHHHHhCCceEEecCCHHHHHHHHHHHHHH
Confidence 788887754332234444444 379999998775 4555555555544444455554443
No 236
>PRK06568 F0F1 ATP synthase subunit B; Validated
Probab=30.53 E-value=2.9e+02 Score=27.22 Aligned_cols=51 Identities=14% Similarity=0.056 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 770 KNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830 (837)
Q Consensus 770 k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 830 (837)
.++-++++..++..|+++.+-++..+ ...++..++..++-..+++.+.+..
T Consensus 55 ~~l~~e~e~~L~~Ar~EA~~Ii~~A~----------~~a~~~~~ea~~eA~~ea~r~~~~A 105 (154)
T PRK06568 55 ALLFEQTNAQIKKLETLRSQMIEESN----------EVTKKIIQEKTKEIEEFLEHKKSDA 105 (154)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444445544444443332 2334444444444444444444443
No 237
>PF03938 OmpH: Outer membrane protein (OmpH-like); InterPro: IPR005632 This entry includes outer membrane proteins such as OmpH (Skp) among others. OmpH (outer membrane protein H) is a major structural protein of the outer membrane. In Pasteurella multocida it acts as a channel-forming transmembrane porin []. Porins act as molecular sieves to allow the diffusion of small hydrophilic solutes through the outer membrane and also acts as a receptor for bacteriophages and bacteriocins. Porins are highly immunogenic and are conserved in bacterial families, making them attractive vaccine candidates []. The 17kDa protein (Skp, OmpH) of Escherichia coli is a homotrimeric periplasmic chaperone for newly synthesised outer-membrane proteins, the X-ray structure of which has been reported at resolutions of 2.35 A and 2.30 A [, ]. Three hairpin-shaped alpha-helical extensions reach out by approximately 60 A from a trimerisation domain, which is composed of three intersubunit beta-sheets that wind around a central axis. The alpha-helical extensions approach each other at their distal turns, resulting in a fold that resembles a 'three-pronged grasping forcep'. The overall shape of Skp is reminiscent of the cytosolic chaperone prefoldin (IPR009053 from INTERPRO), although it is based on a radically different topology. The peculiar architecture, with apparent plasticity of the prongs and distinct electrostatic and hydrophobic surface properties, supports the recently proposed biochemical mechanism of this chaperone: formation of a Skp(3)-Omp complex protects the outer membrane protein from aggregation during passage through the bacterial periplasm. The ability of Skp to prevent the aggregation of model substrates in vitro is independent of ATP. Skp can interact directly with membrane lipids and lipopolysaccharide. These interactions are needed for efficient Skp-assisted folding of membrane proteins [].; GO: 0051082 unfolded protein binding; PDB: 1SG2_C 1U2M_C.
Probab=30.29 E-value=4.1e+02 Score=25.62 Aligned_cols=78 Identities=14% Similarity=0.179 Sum_probs=51.5
Q ss_pred CeeEEeCCCCCHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHH
Q psy13351 748 NIIYVSIPPLTKER--REEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEIN 824 (837)
Q Consensus 748 ~~i~v~iP~~T~E~--R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id 824 (837)
..-.|.+..+=.++ .+...+..++..++....+...+++..+..+++.+.+ .+|+++....+.+++....++-....
T Consensus 18 kIa~Vd~~~v~~~~~~~k~~~~~l~~~~~~~~~~l~~~~~el~~~~~~l~~~~~~ls~~~~~~~~~~l~~~~~~l~~~~~ 97 (158)
T PF03938_consen 18 KIAVVDVDKVFQESPAGKDAQAKLQEKFKALQKELQAKQKELQKLQQKLQSQKATLSEEERQKRQQELQQKEQELQQFQQ 97 (158)
T ss_dssp CEEEE-HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----SSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cEEEeeHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433333 4556677777788888888888888888877776654 58999888888888877766665444
Q ss_pred H
Q psy13351 825 Q 825 (837)
Q Consensus 825 ~ 825 (837)
.
T Consensus 98 ~ 98 (158)
T PF03938_consen 98 Q 98 (158)
T ss_dssp H
T ss_pred H
Confidence 3
No 238
>smart00546 CUE Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs). CUE domains also occur in two protein of the IL-1 signal transduction pathway, tollip and TAB2. Ponting (Biochem. J.) "Proteins of the Endoplasmic reticulum" (in press)
Probab=30.17 E-value=66 Score=24.08 Aligned_cols=26 Identities=19% Similarity=0.031 Sum_probs=22.2
Q ss_pred CChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 228 APIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 228 ~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+....+..|.+++||++.|++.|-+
T Consensus 16 l~~~~I~~~L~~~~g~ve~~i~~LL~ 41 (43)
T smart00546 16 LDEEVIKAVLEANNGNVEATINNLLE 41 (43)
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 56677889999999999999988754
No 239
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=30.12 E-value=1.8e+02 Score=31.06 Aligned_cols=71 Identities=25% Similarity=0.284 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEE
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIIL 569 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~li 569 (837)
|+..|+..|..+|++...... +++.... ..+.+..+.++-.+.|++|+.|..- .|.++-.+|.+++-++++
T Consensus 22 Na~~la~~L~~~G~~v~~~~~--VgD~~~~-I~~~l~~a~~r~D~vI~tGGLGPT~--DDiT~e~vAka~g~~lv~ 92 (255)
T COG1058 22 NAAFLADELTELGVDLARITT--VGDNPDR-IVEALREASERADVVITTGGLGPTH--DDLTAEAVAKALGRPLVL 92 (255)
T ss_pred hHHHHHHHHHhcCceEEEEEe--cCCCHHH-HHHHHHHHHhCCCEEEECCCcCCCc--cHhHHHHHHHHhCCCccc
Confidence 677789999999998644322 1111111 1245566667788999999887643 788888899999876544
No 240
>TIGR01144 ATP_synt_b ATP synthase, F0 subunit b. This model describes the F1/F0 ATP synthase b subunit in bacteria only. Scoring just below the trusted cutoff are the N-terminal domains of Mycobacterial b/delta fusion proteins and a subunit from an archaeon, Methanosarcina barkeri, in which the ATP synthase homolog differs in architecture and is not experimentally confirmed. This model helps resolve b from the related b' subunit. Within the family is an example from a sodium-translocating rather than proton-translocating ATP synthase.
Probab=30.09 E-value=2.8e+02 Score=26.59 Aligned_cols=62 Identities=13% Similarity=0.086 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 773 TEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 773 ~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
+++.+...-..+.++...+....... .+-++-....++..+.+.++.-++++.+.+..+.+|
T Consensus 38 A~~~~~ea~~~~~e~~~~l~~A~~ea~~i~~~a~~~a~~~~~~~~~~a~~e~~~~~~~a~~~i 100 (147)
T TIGR01144 38 AERAKKEAALAQKKAQVILKEAKDEAQEIIENANKRGSEILEEAKAEAREEREKIKAQARAEI 100 (147)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444332211 122233334445555555555555555555555444
No 241
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=29.65 E-value=1e+02 Score=31.64 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=37.7
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+-||.+++.....+...++++...+||+|++ |+..+...+.|.-+ |...+..+....|.+
T Consensus 54 ~~~d~iii~~~~~~~~~~~~~~~~~ipvv~~-~~~~~~~~~~~v~~---d~~~~g~~~~~~l~~ 113 (264)
T cd06267 54 RRVDGIILAPSRLDDELLEELAALGIPVVLV-DRPLDGLGVDSVGI---DNRAGAYLAVEHLIE 113 (264)
T ss_pred cCcCEEEEecCCcchHHHHHHHHcCCCEEEe-cccccCCCCCEEee---ccHHHHHHHHHHHHH
Confidence 4789998887665555589999999999997 44433223433322 344555555555543
No 242
>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs. Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).
Probab=29.59 E-value=2.1e+02 Score=29.89 Aligned_cols=61 Identities=18% Similarity=0.118 Sum_probs=37.7
Q ss_pred CCCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCCC-CCcceEEccCCCcchhhhhhhhhhchhhh
Q psy13351 148 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHS-PDGINYVIPGNDDSAKSIALYTKGIVDAF 213 (837)
Q Consensus 148 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~~-~~~i~ypIP~N~~s~~si~~~~~~l~~ai 213 (837)
+.+|.+|+.....+ ...+.++.. +||+|.+ |.+.+ ...+.|.- .|...+-+..+..|.+.+
T Consensus 54 ~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~-~~~~~~~~~~~~V~---~D~~~~g~~a~~~l~~~~ 117 (271)
T cd06314 54 EGVDGIAISPIDPKAVIPALNKAAA-GIKLITT-DSDAPDSGRYVYIG---TDNYAAGRTAGEIMKKAL 117 (271)
T ss_pred cCCCEEEEecCChhHhHHHHHHHhc-CCCEEEe-cCCCCccceeEEEc---cChHHHHHHHHHHHHHHc
Confidence 47898888754332 456788888 9999997 44332 22344433 244566666666665543
No 243
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=29.47 E-value=1.9e+02 Score=24.58 Aligned_cols=34 Identities=18% Similarity=0.364 Sum_probs=26.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 754 IPPLTKERREEIVKLIKNITEETKISIRKIRRDS 787 (837)
Q Consensus 754 iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~ 787 (837)
+|+.+.+.|+.+++.+....++|..-|...--++
T Consensus 15 ~~~~~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~ 48 (79)
T PF05008_consen 15 IKNLSGEQRKSLIREIERDLDEAEELLKQMELEV 48 (79)
T ss_dssp GGGS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456668999999999999999999887665443
No 244
>COG4069 Uncharacterized protein conserved in archaea [Function unknown]
Probab=29.34 E-value=50 Score=35.54 Aligned_cols=35 Identities=20% Similarity=0.309 Sum_probs=24.8
Q ss_pred CCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCC
Q psy13351 150 PDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHS 184 (837)
Q Consensus 150 P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~ 184 (837)
.+++|.+.-..-..|-.=-.++|||+|||.|-|||
T Consensus 267 ~~lvvTvGDDTT~vagdIl~RfgipiiGItDgD~D 301 (367)
T COG4069 267 AGLVVTVGDDTTEVAGDILYRFGIPIIGITDGDCD 301 (367)
T ss_pred CceEEEEcCcchhHHHHHHHhcCCcEEecccCChH
Confidence 34555554444445555667899999999999997
No 245
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=29.13 E-value=1.1e+02 Score=31.77 Aligned_cols=60 Identities=17% Similarity=0.229 Sum_probs=38.4
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+-+|.+++.....+...++++...|+|+|.+ |...+.....|... |...+.+.+...|.+
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~ 113 (264)
T cd06274 54 RQVDALIVAGSLPPDDPYYLCQKAGLPVVAL-DRPGDPSRFPSVVS---DNRDGAAELTRELLA 113 (264)
T ss_pred cCCCEEEEcCCCCchHHHHHHHhcCCCEEEe-cCccCCCCCCEEEE---ccHHHHHHHHHHHHH
Confidence 4689898887655555588889999999988 66554334555433 445555555444443
No 246
>PTZ00394 glucosamine-fructose-6-phosphate aminotransferase; Provisional
Probab=29.04 E-value=1.3e+02 Score=37.09 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=55.5
Q ss_pred CCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCC---cch------hhhhhhhhhchhhh
Q psy13351 149 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGND---DSA------KSIALYTKGIVDAF 213 (837)
Q Consensus 149 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~---~s~------~si~~~~~~l~~ai 213 (837)
.-+++|+++..-+ ..|++.|+..|+|||+|++...+| +..||.|+.+. .+. .+.-+++.+++-.+
T Consensus 401 ~~dlvI~ISqSGeT~dtl~Al~~Ak~~Ga~tIaITn~~~S~La~~AD~~l~~~ag~E~~va~Tks~tsql~~l~llal~l 480 (670)
T PTZ00394 401 RDDVCFFVSQSGETADTLMALQLCKEAGAMCVGITNVVGSSISRLTHYAIHLNAGVEVGVASTKAYTSQVVVLTLVALLL 480 (670)
T ss_pred CCCEEEEEECCcCcHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhcCeEEEecccccccccccHhHHHHHHHHHHHHHHH
Confidence 3467888765433 346788899999999998776554 45677776432 222 22112222222222
Q ss_pred hcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 214 LDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 214 ~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
...+. .+ .....+..++|.+...-++++++|.++.
T Consensus 481 a~~~~--~~----~~~~~~l~~~l~~lp~~i~~~l~~~~~~ 515 (670)
T PTZ00394 481 SSDSV--RL----QERRNEIIRGLAELPAAISECLKITHDP 515 (670)
T ss_pred HHhcC--ch----HHHHHHHHHHHHHHHHHHHHHHhhchHH
Confidence 11110 00 1113456667777777888888875543
No 247
>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.78 E-value=3.4e+02 Score=27.93 Aligned_cols=59 Identities=19% Similarity=0.217 Sum_probs=36.4
Q ss_pred CCCCEEEEecCCCcc-hHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhch
Q psy13351 148 IIPDAIFIIDVGYHK-GAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIV 210 (837)
Q Consensus 148 ~~P~~vii~~~~~~~-~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~ 210 (837)
..+|.+|+.....+. .+++++...|||+|.+ |+..+...++|.-+-| ..+.++.+..|.
T Consensus 54 ~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~v~~d~---~~~~~~~~~~l~ 113 (268)
T cd06289 54 HGVAGIILCPAAGTSPDLLKRLAESGIPVVLV-AREVAGAPFDYVGPDN---AAGARLATEHLI 113 (268)
T ss_pred cCCCEEEEeCCCCccHHHHHHHHhcCCCEEEE-eccCCCCCCCEEeecc---hHHHHHHHHHHH
Confidence 468989888654432 3688999999999987 4443333455544433 334555554443
No 248
>PRK13454 F0F1 ATP synthase subunit B'; Provisional
Probab=28.73 E-value=2.9e+02 Score=27.86 Aligned_cols=75 Identities=17% Similarity=0.114 Sum_probs=46.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 760 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 760 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
+.|++.++.--..+++.+......+.++...+.+.++.. .+-++-....++..+.+.++.-.+++.+.+.-+++|
T Consensus 61 ~~R~~~I~~~l~~Ae~~~~eA~~~~~eye~~L~~Ar~EA~~ii~~A~~ea~~~~~~~~~~A~~e~~~~~aea~~~I 136 (181)
T PRK13454 61 AERQGTITNDLAAAEELKQKAVEAEKAYNKALADARAEAQRIVAETRAEIQAELDVAIAKADAEIAAKAAESEKRI 136 (181)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555555556677888888888888777777765432 244444455556666666666666666666555444
No 249
>KOG0944|consensus
Probab=28.71 E-value=45 Score=39.82 Aligned_cols=28 Identities=18% Similarity=0.083 Sum_probs=25.3
Q ss_pred CCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 227 LAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 227 ~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
|...-+|++||.++||+++.|++|+=-.
T Consensus 646 Gf~~~qa~~aL~~~n~nveravDWif~h 673 (763)
T KOG0944|consen 646 GFSRNQAIKALKATNNNVERAVDWIFSH 673 (763)
T ss_pred cCcHHHHHHHHHhcCccHHHHHHHHHhc
Confidence 6778899999999999999999999654
No 250
>PF03179 V-ATPase_G: Vacuolar (H+)-ATPase G subunit; InterPro: IPR005124 This family represents the eukaryotic vacuolar (H+)-ATPase (V-ATPase) G subunit. V-ATPases generate an acidic environment in several intracellular compartments. Correspondingly, they are found as membrane-attached proteins in several organelles. They are also found in the plasma membranes of some specialised cells. V-ATPases consist of peripheral (V1) and membrane integral (V0) heteromultimeric complexes. The G subunit is part of the V1 subunit, but is also thought to be strongly attached to the V0 complex. It may be involved in the coupling of ATP degradation to H+ translocation.; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015992 proton transport, 0016471 vacuolar proton-transporting V-type ATPase complex; PDB: 2KWY_A 2K88_A.
Probab=28.66 E-value=4.4e+02 Score=23.78 Aligned_cols=67 Identities=21% Similarity=0.268 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13351 761 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833 (837)
Q Consensus 761 ~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 833 (837)
.|...+|.|+..++ .-|-..|...-+..+...+. -.-.......+|++-|+..+..+...+.....+
T Consensus 26 ~r~~~lk~Ak~eA~---~ei~~~r~~~e~~~~~~~~~---~~~~~~~~~~~l~~et~~~i~~i~~~~~~~~~~ 92 (105)
T PF03179_consen 26 EREQRLKQAKEEAE---KEIEEFRAEAEEEFKEKEAE---AEGEAEQEAEELEKETEEKIEEIKKSASKNKDK 92 (105)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHH-S---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH---hhccchhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444444444433 33444444444444433221 112234455556666666666666555544433
No 251
>CHL00118 atpG ATP synthase CF0 B' subunit; Validated
Probab=28.57 E-value=2.6e+02 Score=27.33 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 763 EEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 763 ~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
++.-+.+...-++++..+...|.++.+-+....... ...++....++++.+.+.++..++++.--+...+++
T Consensus 66 e~~~~ea~~~~~e~e~~L~~A~~ea~~ii~~A~~~a~~~~~~~~~~A~~ea~~~~~~a~~~i~~ek~~a~~~l 138 (156)
T CHL00118 66 SEILAKANELTKQYEQELSKARKEAQLEITQSQKEAKEIVENELKQAQKYIDSLLNEATKQLEAQKEKALKSL 138 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555544444432221 234566777888888888888888877655554443
No 252
>PF07946 DUF1682: Protein of unknown function (DUF1682); InterPro: IPR012879 The members of this family are all hypothetical eukaryotic proteins of unknown function. One member (Q920S6 from SWISSPROT) is described as being an adipocyte-specific protein, but no evidence of this was found.
Probab=28.54 E-value=1.8e+02 Score=32.32 Aligned_cols=53 Identities=13% Similarity=0.112 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 761 RREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 761 ~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
.|++..+...+..++.|..-+.-|+.-.++-++..+-..+|+++.++.+++-+
T Consensus 263 ~R~~~~~~~~K~~~~~r~E~~~~~k~e~kr~e~~~~~~~lspeeQrK~eeKe~ 315 (321)
T PF07946_consen 263 NREEEEEKILKEAHQERQEEAQEKKEEKKREERERKLSKLSPEEQRKYEEKER 315 (321)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 35555555555555555555544444433333333334567777777665433
No 253
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=28.28 E-value=2.5e+02 Score=29.38 Aligned_cols=60 Identities=20% Similarity=0.218 Sum_probs=34.5
Q ss_pred CCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhh
Q psy13351 149 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDA 212 (837)
Q Consensus 149 ~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~a 212 (837)
.+|.+|+.....+ ...+.++...+||+|.+ |+..+.....|.-+ |..++.......|.+.
T Consensus 57 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~~ 118 (275)
T cd06320 57 GYKGLLFSPISDVNLVPAVERAKKKGIPVVNV-NDKLIPNATAFVGT---DNKANGVRGAEWIIDK 118 (275)
T ss_pred CCCEEEECCCChHHhHHHHHHHHHCCCeEEEE-CCCCCCccceEEec---CcHHHHHHHHHHHHHH
Confidence 5788877532222 24678889999999965 65443333444322 4444555555555444
No 254
>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Probab=28.09 E-value=99 Score=32.54 Aligned_cols=63 Identities=19% Similarity=0.119 Sum_probs=37.8
Q ss_pred CCCCEEEEecCCCcch-HHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhh
Q psy13351 148 IIPDAIFIIDVGYHKG-AVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAF 213 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~-ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai 213 (837)
.-||.+|+.....+.. .+.++...|||+|.+-+...++....|. ..|...+-+.....|.+..
T Consensus 56 ~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~~~~~~~~~~~~V---~~d~~~~g~~~~~~l~~~g 119 (268)
T cd06306 56 WGADAILLGAVSPDGLNEILQQVAASIPVIALVNDINSPDITAKV---GVSWYEMGYQAGEYLAQRH 119 (268)
T ss_pred cCCCEEEEcCCChhhHHHHHHHHHCCCCEEEeccCCCCcceeEEe---cCChHHHHHHHHHHHHHHh
Confidence 4799998875443332 4899999999999883222223223343 2344555566656555544
No 255
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=27.80 E-value=2.8e+02 Score=27.84 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=20.1
Q ss_pred CCCEEEEecCCCcc-hHHHHHh---hcCCCEEEEe-cCCCCCCc
Q psy13351 149 IPDAIFIIDVGYHK-GAVSEAI---KLNIPIIGVV-DTNHSPDG 187 (837)
Q Consensus 149 ~P~~vii~~~~~~~-~ai~Ea~---~l~IP~i~l~-Dtn~~~~~ 187 (837)
.-|-|+++.|..+. .+++-|. ..+||+|++| .....+++
T Consensus 81 ~~DRVllfs~~~~~~e~~~~a~~L~~~gi~~v~Vs~~~~~~~~l 124 (172)
T PF10740_consen 81 ETDRVLLFSPFSTDEEAVALAKQLIEQGIPFVGVSPNKPDEEDL 124 (172)
T ss_dssp TT-EEEEEES-S--HHHHHHHHHHHHHT--EEEEE-SS---TTG
T ss_pred ccceEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEEecCCCCCch
Confidence 55778888887665 5554444 4599999999 33334444
No 256
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=27.56 E-value=6.2e+02 Score=27.17 Aligned_cols=49 Identities=12% Similarity=0.108 Sum_probs=35.9
Q ss_pred CCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCc
Q psy13351 149 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDD 197 (837)
Q Consensus 149 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~ 197 (837)
-||++|+....-+....+-....+.+++.|=|...-+-..|+.|-+|-.
T Consensus 80 ~~d~vV~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~~~D~vin~~~~ 128 (279)
T TIGR03590 80 KFDILIVDHYGLDADWEKLIKEFGRKILVIDDLADRPHDCDLLLDQNLG 128 (279)
T ss_pred CCCEEEEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCcCCCEEEeCCCC
Confidence 6998888877666555555555677888888877666678888888753
No 257
>PRK09165 replicative DNA helicase; Provisional
Probab=27.29 E-value=6.4e+02 Score=29.79 Aligned_cols=87 Identities=15% Similarity=0.192 Sum_probs=56.7
Q ss_pred CCcCcccceeCC-eeEe----eHHHHHHHHHHHHHHHHHhc-----------cCCCeEEEEecchhhHHHHHHH-HHHcC
Q psy13351 18 KMSSYIFGHRNK-IHII----NLEKTLYMYEKAIRYIYQLG-----------FSKGTLLFVGTKRQARGVIANE-AVRAG 80 (837)
Q Consensus 18 ~m~~~i~g~r~g-~~Ii----nl~~T~~~L~~a~~~i~~~~-----------~~~~~iLfv~t~~~~~~~v~~~-a~~~~ 80 (837)
.+...+-|.+.| +.|| ..-||...|.-|.+...... .++.+++|++.--...+++..+ |..++
T Consensus 206 ~LD~~~gG~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlEMs~~ql~~R~la~~s~ 285 (497)
T PRK09165 206 DLDSKLGGLHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLEMSAEQLATRILSEQSE 285 (497)
T ss_pred HHhhhcCCCCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCcCCHHHHHHHHHHHhcC
Confidence 445556677665 3443 67899999988887765431 2478899998888777777765 45566
Q ss_pred CCcccCcccCCCCCC--hHHHHHHHHHH
Q psy13351 81 MPFIDQRWLGGLLTN--FKTIKTSIQRL 106 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN--~~~i~~~i~~~ 106 (837)
..+ .++..|.|++ |..+.....++
T Consensus 286 v~~--~~i~~~~l~~~e~~~l~~a~~~l 311 (497)
T PRK09165 286 ISS--SKIRRGKISEEDFEKLVDASQEL 311 (497)
T ss_pred CCH--HHHhcCCCCHHHHHHHHHHHHHH
Confidence 554 2467888885 44444444333
No 258
>PRK05636 replicative DNA helicase; Provisional
Probab=27.13 E-value=6.2e+02 Score=30.01 Aligned_cols=82 Identities=12% Similarity=0.085 Sum_probs=51.8
Q ss_pred eccccCCCCCCCcCcccceeCCeeEe-----eHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHH-HHHHcCC
Q psy13351 8 FGHQTRFWNPKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIAN-EAVRAGM 81 (837)
Q Consensus 8 ~G~~~~~wnp~m~~~i~g~r~g~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~-~a~~~~~ 81 (837)
.|-.+. -+.+...+.|.+.|-.|+ ..-||...|.-|.+... +++..++|++.--...+++.. .|..++.
T Consensus 246 ~Gi~TG--~~~LD~~t~Gl~~G~Liiiaarpg~GKT~~al~~a~~~a~---~~g~~v~~fSlEMs~~ql~~R~ls~~s~v 320 (505)
T PRK05636 246 TGIPTG--FKDLDDLTNGLRGGQMIIVAARPGVGKSTLALDFMRSASI---KHNKASVIFSLEMSKSEIVMRLLSAEAEV 320 (505)
T ss_pred CceecC--hHHHhhhcCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHH---hCCCeEEEEEeeCCHHHHHHHHHHHhcCC
Confidence 344443 345566777877775555 67899888876665432 346788888776666666554 4555665
Q ss_pred CcccCcccCCCCCCh
Q psy13351 82 PFIDQRWLGGLLTNF 96 (837)
Q Consensus 82 ~~v~~rw~~G~LTN~ 96 (837)
.+ .++..|.||..
T Consensus 321 ~~--~~i~~g~l~~~ 333 (505)
T PRK05636 321 RL--SDMRGGKMDED 333 (505)
T ss_pred CH--HHHhcCCCCHH
Confidence 54 24678888753
No 259
>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein. This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.
Probab=26.81 E-value=2.6e+02 Score=29.91 Aligned_cols=34 Identities=26% Similarity=0.209 Sum_probs=23.8
Q ss_pred CCCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCC
Q psy13351 148 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTN 182 (837)
Q Consensus 148 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn 182 (837)
+-+|.+|+.....+ ..+++++...+||+|.+ |++
T Consensus 55 ~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~-~~~ 90 (302)
T TIGR02637 55 QKVDAIAISANDPDALVPALKKAMKRGIKVVTW-DSG 90 (302)
T ss_pred cCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEe-CCC
Confidence 46898888744322 34578888999999986 443
No 260
>TIGR02919 accessory Sec system glycosyltransferase GtfB. Members of this protein family are found only in Gram-positive bacteria of the Firmicutes lineage, including several species of Staphylococcus, Streptococcus, and Lactobacillus.
Probab=26.79 E-value=3.7e+02 Score=31.17 Aligned_cols=47 Identities=28% Similarity=0.315 Sum_probs=31.5
Q ss_pred CCEEEEecC-CCcchHHHHHhhcCCCEEEEecCCCCCCcce--EEccCCC
Q psy13351 150 PDAIFIIDV-GYHKGAVSEAIKLNIPIIGVVDTNHSPDGIN--YVIPGND 196 (837)
Q Consensus 150 P~~vii~~~-~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~--ypIP~N~ 196 (837)
-|+.+-+|. .+-..++.||...|+|++|+=.|-.++..+. |-+|.++
T Consensus 348 ~dlyLdin~~e~~~~al~eA~~~G~pI~afd~t~~~~~~i~~g~l~~~~~ 397 (438)
T TIGR02919 348 CDIYLDINHGNEILNAVRRAFEYNLLILGFEETAHNRDFIASENIFEHNE 397 (438)
T ss_pred ccEEEEccccccHHHHHHHHHHcCCcEEEEecccCCcccccCCceecCCC
Confidence 344444444 4667899999999999999988765554433 3444443
No 261
>PTZ00372 endonuclease 4-like protein; Provisional
Probab=26.75 E-value=1.5e+02 Score=34.06 Aligned_cols=72 Identities=17% Similarity=0.213 Sum_probs=60.1
Q ss_pred eeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCccceec-CCeeEEeCCCCCHHHHHHHHHHHHHHHHHHH
Q psy13351 705 KIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQ-GNIIYVSIPPLTKERREEIVKLIKNITEETK 777 (837)
Q Consensus 705 ~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~~-~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k 777 (837)
+.-||-+++||.+.-.|+++..+....+++.+.++++.|..- +..+ +.+-.+.+|.|+.-++..+...+.|.
T Consensus 156 ~afqiF~~npr~w~~~~~~~~~~~~f~~~~~~~gi~~~~i~~HapYl-INLASpd~e~rekSv~~~~~eL~rA~ 228 (413)
T PTZ00372 156 QAFALFLKNQRTWNSPPLSDETIDKFKENCKKYNYDPKFILPHGSYL-INLANPDKEKREKSYDAFLDDLQRCE 228 (413)
T ss_pred CEEEEEcCCCccCCCCCCCHHHHHHHHHHHHHcCCCcceEEeecCce-ecCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 677899999999999999999999999999999998777643 3444 88888999999998888877766654
No 262
>PRK05595 replicative DNA helicase; Provisional
Probab=26.73 E-value=6.9e+02 Score=28.91 Aligned_cols=83 Identities=12% Similarity=0.131 Sum_probs=52.2
Q ss_pred CCCcCcccceeCCeeEe-----eHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHH-HHHcCCCcccCcccC
Q psy13351 17 PKMSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANE-AVRAGMPFIDQRWLG 90 (837)
Q Consensus 17 p~m~~~i~g~r~g~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~-a~~~~~~~v~~rw~~ 90 (837)
+.+...+-|.+.|-.++ ..-||...+.-|++... .+|.+++|++.--....++..+ |..++..+- ++..
T Consensus 189 ~~ld~~~~G~~~g~liviaarpg~GKT~~al~ia~~~a~---~~g~~vl~fSlEms~~~l~~R~~a~~~~v~~~--~~~~ 263 (444)
T PRK05595 189 RELDAKTSGFQKGDMILIAARPSMGKTTFALNIAEYAAL---REGKSVAIFSLEMSKEQLAYKLLCSEANVDML--RLRT 263 (444)
T ss_pred HHHHHhcCCCCCCcEEEEEecCCCChHHHHHHHHHHHHH---HcCCcEEEEecCCCHHHHHHHHHHHhcCCCHH--HHhc
Confidence 44555566777774444 67899988888776532 3577899998877666666654 344555542 3556
Q ss_pred CCCCC--hHHHHHHHH
Q psy13351 91 GLLTN--FKTIKTSIQ 104 (837)
Q Consensus 91 G~LTN--~~~i~~~i~ 104 (837)
|.|++ |..+.+...
T Consensus 264 ~~l~~~e~~~~~~~~~ 279 (444)
T PRK05595 264 GNLEDKDWENIARASG 279 (444)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 77775 444444433
No 263
>KOG1664|consensus
Probab=26.72 E-value=2.3e+02 Score=29.08 Aligned_cols=55 Identities=24% Similarity=0.330 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q psy13351 775 ETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEIL 835 (837)
Q Consensus 775 ~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei~ 835 (837)
+-+-.++-||+++.++.+... ++.++.+.+|+ -.|...-..+|++-++.|||++.
T Consensus 9 qi~~M~aFI~qEA~EKA~EI~----~kAeeEfnIEK--~rlV~~q~~kI~~~yekKeKqve 63 (220)
T KOG1664|consen 9 QIKHMVAFIRQEAEEKAKEID----AKAEEEFNIEK--GRLVQEQRLKIMQYYEKKEKQVE 63 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHhh----hhhHHHhhHHH--HHHHHHHHHHHHHHHHHHHHHHH
Confidence 445578899999998887652 46666666665 25666777788888888888763
No 264
>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs. Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p
Probab=26.54 E-value=3.2e+02 Score=29.22 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=38.0
Q ss_pred CCCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhh
Q psy13351 148 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDA 212 (837)
Q Consensus 148 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~a 212 (837)
+.||.+|+..+..+ ..+++++...+||+|.+ |+..+++...++.-+ .|...+.++....|.+.
T Consensus 55 ~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v-~~~~~~~~~~~~~v~-~D~~~~g~~a~~~l~~~ 119 (298)
T cd06302 55 QGVDAIAVVPNDPDALEPVLKKAREAGIKVVTH-DSDVQPDNRDYDIEQ-ADNKAIGETLMDSLAEQ 119 (298)
T ss_pred cCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEE-cCCCCCCcceeEEec-cCHHHHHHHHHHHHHHH
Confidence 46899999865544 46788999999998876 444322112222222 24456666666555544
No 265
>PRK14474 F0F1 ATP synthase subunit B; Provisional
Probab=26.37 E-value=3e+02 Score=29.35 Aligned_cols=61 Identities=8% Similarity=0.023 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13351 773 TEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833 (837)
Q Consensus 773 ~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 833 (837)
+|+.+..--..+.++.+.++...+.. .+-++-....+++.+.+.++--.+++.+.....++
T Consensus 48 Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~A~~eA~~~~~~il~~A~~ea~~~~~~a~~~ 109 (250)
T PRK14474 48 AEQRQQEAGQEAERYRQKQQSLEQQRASFMAQAQEAADEQRQHLLNEAREDVATARDEWLEQ 109 (250)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444333332211 12223333344445555555555555555444433
No 266
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=26.30 E-value=3.1e+02 Score=34.53 Aligned_cols=70 Identities=13% Similarity=0.191 Sum_probs=51.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy13351 757 LTKERREEIVKLIKNITEETKI-----SIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 828 (837)
Q Consensus 757 ~T~E~R~~l~k~~k~~~e~~k~-----~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~ 828 (837)
.|.|.+.+++.....++-..-. +.|++| .+.+.|+...+++ .|++|+.++.+++.+.+++|+..+-+-..
T Consensus 474 ~~~~~l~~v~~~LW~lAl~iEdG~ls~A~~~Lr-~AQ~aL~eAL~~g-AsdeEI~~Lm~eLR~Am~~ym~~LAeq~~ 548 (851)
T TIGR02302 474 RTDDALRDVADNLWSLALGIEDGDLSDAERRLR-AAQDALKDALERG-ASDEEIKQLTDKLRAAMQTYMRQLAQQLR 548 (851)
T ss_pred CCHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHH-HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 7889999999999887753322 334444 3455555554444 79999999999999999999998876544
No 267
>PRK14472 F0F1 ATP synthase subunit B; Provisional
Probab=26.09 E-value=3.4e+02 Score=27.01 Aligned_cols=24 Identities=17% Similarity=0.259 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 769 IKNITEETKISIRKIRRDSNENLK 792 (837)
Q Consensus 769 ~k~~~e~~k~~iR~iR~~~~~~~k 792 (837)
.++..++++.....++.++.....
T Consensus 75 ~e~~L~~a~~ea~~ii~~A~~~a~ 98 (175)
T PRK14472 75 NRELLAKADAEADKIIREGKEYAE 98 (175)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444555555555544444433
No 268
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=25.92 E-value=1.4e+02 Score=29.06 Aligned_cols=60 Identities=10% Similarity=0.063 Sum_probs=37.7
Q ss_pred EeeccCccccCCCC-CCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcC
Q psy13351 570 KATKVDGIYNSDPN-KCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEG 639 (837)
Q Consensus 570 ilTDVdGVy~~dP~-~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~G 639 (837)
+++|+||++..++. ..++.+.+..+.. .+..+++.+.+.|+.+.|+++.........+..
T Consensus 4 ~~~D~Dgtl~~~~~~~~~~~~~~~~~~~----------~~~~~i~~Lk~~G~~i~IvTn~~~~~~~~~l~~ 64 (154)
T TIGR01670 4 LILDVDGVLTDGKIYYTNNGEEIKAFNV----------RDGYGIRCALKSGIEVAIITGRKAKLVEDRCKT 64 (154)
T ss_pred EEEeCceeEEcCeEEECCCCcEEEEEec----------hhHHHHHHHHHCCCEEEEEECCCCHHHHHHHHH
Confidence 57899999876432 2223334444321 112367777888999999988776666666643
No 269
>PRK09174 F0F1 ATP synthase subunit B'; Validated
Probab=25.82 E-value=5.4e+02 Score=26.54 Aligned_cols=75 Identities=11% Similarity=0.047 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 760 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 760 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
|.|++.+..--..+++.|...-..+.++.+.+.+.++.. .+-++-....+++.+...++-.++++.+++..+++|
T Consensus 83 e~R~~~I~~~L~~Ae~~k~eAe~~~~~ye~~L~~Ar~eA~~Ii~~Ar~ea~~~~e~~~~~a~~ea~~~l~~Ae~~I 158 (204)
T PRK09174 83 ETRRDRIAQDLDQAARLKQEADAAVAAYEQELAQARAKAHSIAQAAREAAKAKAEAERAAIEASLEKKLKEAEARI 158 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444445577777777777777777777664422 233333444555555556666666666666666655
No 270
>PF04026 SpoVG: SpoVG; InterPro: IPR007170 This is a stage V sporulation protein G. It is essential for sporulation and specific to stage V sporulation in Bacillus megaterium and Bacillus subtilis []. In B. subtilis, expression decreases after 30-60 minutes of cold shock [].; GO: 0030435 sporulation resulting in formation of a cellular spore; PDB: 2IA9_F 2I9X_B 2I9Z_A.
Probab=25.79 E-value=2.8e+02 Score=24.35 Aligned_cols=74 Identities=28% Similarity=0.344 Sum_probs=42.0
Q ss_pred eeEEEecccccccceeeeeeccCCceEE-EecCCcccHHHHHHHHHhcCCCcc---ce-ecCC-eeEEeCCCCCHHHHHH
Q psy13351 691 NIQVKYHEHLTKLLKIANITLFNSHTIS-IQPFEKEMSSIIKKAINEANLGLN---PT-IQGN-IIYVSIPPLTKERREE 764 (837)
Q Consensus 691 ~i~V~~~g~~~~L~~lA~v~~~~~~~l~-i~~~d~~~~~~I~kaI~~s~l~~~---p~-~~~~-~i~v~iP~~T~E~R~~ 764 (837)
.|+|......-.|+-+|+|+..|.-++. |.+- ++.-|+- |+ ..++ .-+=..=|+|+|.|++
T Consensus 5 dVri~~~~~~~~lka~asV~~dd~f~I~~ikVi-------------eg~~GlFVaMPs~k~~~g~y~Di~~Pitke~Re~ 71 (84)
T PF04026_consen 5 DVRIRKIEPEGKLKAFASVTFDDCFVIHDIKVI-------------EGEKGLFVAMPSRKSKDGEYKDICHPITKEFREQ 71 (84)
T ss_dssp EEEEEETTSSSSEEEEEEEEETTTEEEEEEEEE-------------EETTEEEEE--EEE-TTS-EEESEEESSHHHHHH
T ss_pred EEEEEEecCCCCEEEEEEEEECCEEEEEeEEEE-------------ECCCCcEEECCCcCCCCCCEEEEEEECCHHHHHH
Confidence 4566555555669999999998854443 2221 1222221 22 1222 1111112689999999
Q ss_pred HHHHHHHHHHHHH
Q psy13351 765 IVKLIKNITEETK 777 (837)
Q Consensus 765 l~k~~k~~~e~~k 777 (837)
|-..+-+..+++|
T Consensus 72 i~~aVl~aY~~~~ 84 (84)
T PF04026_consen 72 IEEAVLDAYEEAK 84 (84)
T ss_dssp HHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhcC
Confidence 9999888877764
No 271
>PF06972 DUF1296: Protein of unknown function (DUF1296); InterPro: IPR009719 This family represents a conserved region approximately 60 residues long within a number of plant proteins of unknown function.
Probab=25.46 E-value=78 Score=25.82 Aligned_cols=36 Identities=19% Similarity=0.051 Sum_probs=29.1
Q ss_pred hhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLA-PIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
|..+++-++. +-.+-...|.+||.|-++|.+-|--+
T Consensus 9 VQ~iKEiv~~hse~eIya~L~ecnMDpnea~qrLL~q 45 (60)
T PF06972_consen 9 VQSIKEIVGCHSEEEIYAMLKECNMDPNEAVQRLLSQ 45 (60)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3445666777 88899999999999999999887554
No 272
>TIGR03321 alt_F1F0_F0_B alternate F1F0 ATPase, F0 subunit B. CC and in principle may run in either direction. This model represents the F0 subunit B of this apparent second ATP synthase.
Probab=25.39 E-value=3.1e+02 Score=28.99 Aligned_cols=25 Identities=24% Similarity=0.195 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13351 808 AQYDIQKLTDKFILEINQLLINKEK 832 (837)
Q Consensus 808 ~~~~iq~l~~~~~~~id~~~~~kek 832 (837)
+++.-+++.++--.+++.+.+....
T Consensus 84 A~~~~~~i~~~A~~ea~~~~~~a~~ 108 (246)
T TIGR03321 84 AQAERQRLLDEAREEADEIREKWQE 108 (246)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444443333
No 273
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=25.30 E-value=1e+02 Score=32.94 Aligned_cols=29 Identities=10% Similarity=0.191 Sum_probs=23.5
Q ss_pred HHHHHHHhCCCCEEEEEccCcchHHHHHc
Q psy13351 610 TAFSFCRDQKLPIRVFSIIKSGALKRVIE 638 (837)
Q Consensus 610 ~Aa~~a~~~gi~v~I~ng~~~~~i~~al~ 638 (837)
.|+..+.+.|+++++++|+....+..++.
T Consensus 31 ~ai~~l~~~Gi~~viaTGR~~~~i~~~~~ 59 (271)
T PRK03669 31 PWLTRLREAQVPVILCSSKTAAEMLPLQQ 59 (271)
T ss_pred HHHHHHHHcCCeEEEEcCCCHHHHHHHHH
Confidence 46777888999999999998887766644
No 274
>COG0449 GlmS Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains [Cell envelope biogenesis, outer membrane]
Probab=25.24 E-value=1.6e+02 Score=35.33 Aligned_cols=94 Identities=9% Similarity=-0.021 Sum_probs=61.7
Q ss_pred CEEEEecCC----CcchHHHHHhhcCCCEEEEecCCCCC--CcceEEccCC---------Ccchhhhhhhhhhchhhhhc
Q psy13351 151 DAIFIIDVG----YHKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGN---------DDSAKSIALYTKGIVDAFLD 215 (837)
Q Consensus 151 ~~vii~~~~----~~~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N---------~~s~~si~~~~~~l~~ai~~ 215 (837)
+++|.+++. ....|+++|++.|.|++|+|+...++ +..|++++-+ .+++.+--+.+++|+-.+-.
T Consensus 332 ~L~I~ISQSGETaDTl~ALr~ak~~G~~tlaItNv~gSti~Resd~~l~~~AGpEigVAsTKaftaQl~~L~lLal~~a~ 411 (597)
T COG0449 332 TLVIAISQSGETADTLAALRLAKEQGAKTLAITNVPGSTIARESDHTLLIRAGPEIGVASTKAFTAQVLALYLLALYLAK 411 (597)
T ss_pred cEEEEEccCcccHHHHHHHHHHHHcCCCEEEEEecCCChhhcccceEEEeccCCceeeecchhHHHHHHHHHHHHHHHhH
Confidence 556666554 34578999999999999999876433 4578887765 45555555555555554433
Q ss_pred ccchhhhhcccCCChHHHHHHHHHhhccHHHHHH
Q psy13351 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEE 249 (837)
Q Consensus 216 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~ 249 (837)
.+. ..+......-.++|+..-+.+++++.
T Consensus 412 ~~g-----~i~~~~~~~~~~~L~~lp~~i~~~l~ 440 (597)
T COG0449 412 QRG-----TISEEEERSLIKELQKLPNHIPKVLA 440 (597)
T ss_pred hhC-----ccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 321 22344566677788888777877777
No 275
>KOG2561|consensus
Probab=25.16 E-value=79 Score=36.08 Aligned_cols=75 Identities=15% Similarity=0.128 Sum_probs=53.0
Q ss_pred ceEEccCCCcchhhhhhhhhhchh--hhhcccch-------------hhhh--cc-------cCCChHHHHHHHHHhhcc
Q psy13351 188 INYVIPGNDDSAKSIALYTKGIVD--AFLDAKTV-------------GELR--SK-------TLAPIMECKKALIEANGK 243 (837)
Q Consensus 188 i~ypIP~N~~s~~si~~~~~~l~~--ai~~g~~v-------------~~lr--~~-------t~~~~~~~k~al~~~~~d 243 (837)
--|-|-||+-.-+++.+=+.+|.- +.-+|+.. +++. .. -|....++|-||..++||
T Consensus 251 Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~mGfeesdaRlaLRsc~g~ 330 (568)
T KOG2561|consen 251 RLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGMGFEESDARLALRSCNGD 330 (568)
T ss_pred hhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHcCCCchHHHHHHHhcccc
Confidence 457788988888888877777644 22233311 1111 11 278889999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhh
Q psy13351 244 LSKAEEILRIKLGKKILNI 262 (837)
Q Consensus 244 ~~~A~~~Lr~~g~~~a~kk 262 (837)
++-|++++.++-...|.++
T Consensus 331 Vd~AvqfI~erre~laq~R 349 (568)
T KOG2561|consen 331 VDSAVQFIIERREKLAQKR 349 (568)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999999876666555
No 276
>PRK09173 F0F1 ATP synthase subunit B; Validated
Probab=25.15 E-value=3.7e+02 Score=26.27 Aligned_cols=20 Identities=5% Similarity=0.139 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q psy13351 773 TEETKISIRKIRRDSNENLK 792 (837)
Q Consensus 773 ~e~~k~~iR~iR~~~~~~~k 792 (837)
.++++..+...|.++.+-+.
T Consensus 56 ~~~~e~~L~~A~~ea~~ii~ 75 (159)
T PRK09173 56 LAEYQRKRKEAEKEAADIVA 75 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333
No 277
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=24.79 E-value=4.1e+02 Score=29.28 Aligned_cols=38 Identities=16% Similarity=0.256 Sum_probs=23.9
Q ss_pred CCCEEEEecC-CCcchHHHHHhhcCCCEEEEecCCCCCCc
Q psy13351 149 IPDAIFIIDV-GYHKGAVSEAIKLNIPIIGVVDTNHSPDG 187 (837)
Q Consensus 149 ~P~~vii~~~-~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~ 187 (837)
.-|+++..+- ..-..++-||...|+|+|+ .|....++.
T Consensus 272 ~adi~v~pS~~Eg~~~~~lEAma~G~Pvv~-s~~~g~~e~ 310 (374)
T TIGR03088 272 ALDLFVLPSLAEGISNTILEAMASGLPVIA-TAVGGNPEL 310 (374)
T ss_pred hcCEEEeccccccCchHHHHHHHcCCCEEE-cCCCCcHHH
Confidence 3455544332 1235689999999999998 455444443
No 278
>PRK01885 greB transcription elongation factor GreB; Reviewed
Probab=24.69 E-value=2.9e+02 Score=27.20 Aligned_cols=66 Identities=12% Similarity=0.069 Sum_probs=51.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 756 PLTKERREEIVKLIKNITEETKISIRK-IRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLIN 829 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~k~~iR~-iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~ 829 (837)
.||+|-.+.|.+.+..+ ++ -|.+..+.++.....+.+||+-.+.+-++-|...+..+.+++..++.
T Consensus 6 ~lT~~g~~~L~~EL~~L--------~~~~r~e~~~~i~~Ar~~GDl~ENaeY~aAk~~~~~~e~rI~~L~~~L~~ 72 (157)
T PRK01885 6 YITREGYARLKQELDYL--------WREERPEVTQKVSWAASLGDRSENADYIYGKKRLREIDRRVRFLTKRLEN 72 (157)
T ss_pred ccCHHHHHHHHHHHHHH--------HhhhhHHHHHHHHHHHHcCCcchhhcHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 48999988887776654 22 35555555666556677999999999999999999999999998864
No 279
>PRK05670 anthranilate synthase component II; Provisional
Probab=24.56 E-value=1.3e+02 Score=30.24 Aligned_cols=30 Identities=10% Similarity=0.028 Sum_probs=20.5
Q ss_pred EEEEecchhhHHHHHHHHHHcCCCcccCcc
Q psy13351 59 LLFVGTKRQARGVIANEAVRAGMPFIDQRW 88 (837)
Q Consensus 59 iLfv~t~~~~~~~v~~~a~~~~~~~v~~rw 88 (837)
||+|.+..+....+..+..+.|..+.--+|
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEEC
Confidence 788888887777777777777765543333
No 280
>COG1879 RbsB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=24.29 E-value=1.9e+02 Score=31.48 Aligned_cols=125 Identities=21% Similarity=0.153 Sum_probs=70.2
Q ss_pred CCCCEEEEe--cCCCcchHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCCcchhhhhhhhhhchhhhhcccchhhhh
Q psy13351 148 IIPDAIFII--DVGYHKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELR 223 (837)
Q Consensus 148 ~~P~~vii~--~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr 223 (837)
+-||.|++. |+..-..++++|..-|||||.+ |++.+. ....|.-. |+..+=......+.+..-.+-.+-
T Consensus 90 ~~~daIiv~~~d~~~~~~~v~~a~~aGIpVv~~-d~~~~~~~~~~~~vg~---dn~~~G~~~a~~l~~~~~~~g~v~--- 162 (322)
T COG1879 90 QGVDAIIINPVDPDALTPAVKKAKAAGIPVVTV-DSDIPGPGDRVAYVGS---DNYKAGRLAAEYLAKALGGKGKVV--- 162 (322)
T ss_pred cCCCEEEEcCCChhhhHHHHHHHHHCCCcEEEE-ecCCCCCCceeEEEec---CcHHHHHHHHHHHHHHhCCCCeEE---
Confidence 578999884 7777788999999999999997 444333 23444444 444444444455554443320011
Q ss_pred cccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEeCCEEEEEEEecCCchhccchHHHHHH
Q psy13351 224 SKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFS 303 (837)
Q Consensus 224 ~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~~~~g~iveln~etdfva~n~~f~~la 303 (837)
...|...---...|.+|..++.++..-. .-++....+..| .+.+
T Consensus 163 ---------------~~~g~~~~~~~~~R~~G~~~~l~~~~~~-------------~~v~~~~~~~~~--------~~~a 206 (322)
T COG1879 163 ---------------VLVGSPGNSSAEERVKGFRDALKEHPPD-------------IEVVDVQTGDWD--------RDKA 206 (322)
T ss_pred ---------------EEecCCCCchHHHHHhhHHHHHHhCCCc-------------EEEeeccCCccc--------HHHH
Confidence 1223333334456777777776552211 111222222222 2467
Q ss_pred HHHHHHHHhcCC
Q psy13351 304 KKIAKLITENTP 315 (837)
Q Consensus 304 ~~ia~~iaa~~p 315 (837)
.+++..+.+.+|
T Consensus 207 ~~~~~~~L~~~p 218 (322)
T COG1879 207 LEVMEDLLAANP 218 (322)
T ss_pred HHHHHHHHHhCC
Confidence 788888888888
No 281
>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily. Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.
Probab=24.27 E-value=1.2e+02 Score=31.82 Aligned_cols=58 Identities=21% Similarity=0.123 Sum_probs=34.9
Q ss_pred CCCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhc
Q psy13351 148 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 209 (837)
Q Consensus 148 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l 209 (837)
..+|.+|+.....+ ...+.++...|||+|.+ |+..+...+.|.-+ |...+.+.....|
T Consensus 59 ~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~-~~~~~~~~~~~v~~---d~~~~g~~~~~~l 118 (272)
T cd06300 59 QGVDAIIINPASPTALNPVIEEACEAGIPVVSF-DGTVTTPCAYNVNE---DQAEFGKQGAEWL 118 (272)
T ss_pred cCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEE-ecCCCCCceeEecC---CHHHHHHHHHHHH
Confidence 47899998765433 34678899999999998 44333233444333 3333444444444
No 282
>COG3524 KpsE Capsule polysaccharide export protein [Cell envelope biogenesis, outer membrane]
Probab=24.15 E-value=4.5e+02 Score=28.77 Aligned_cols=73 Identities=19% Similarity=0.344 Sum_probs=50.3
Q ss_pred ceEEEecCCcccHHHHHHHHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13351 715 HTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKL 794 (837)
Q Consensus 715 ~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~ 794 (837)
.++.|+.|||.--+.|-+||.+.+=++ |-.++.--|++.+.-|.....+++..+...|.+..+ -.
T Consensus 142 ~~v~V~aF~p~eaq~Iaqailkqse~l------------IN~Ls~rAr~dt~r~Ae~eV~~~eerv~kAs~~L~~---yr 206 (372)
T COG3524 142 STVNVTAFDPKEAQKIAQAILKQSEKL------------INQLSERARRDTVRFAEEEVQKAEERVKKASNDLTD---YR 206 (372)
T ss_pred eEEEEeecChhhHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH---HH
Confidence 678999999999999999999754221 125667777777777777777777777766655432 22
Q ss_pred hhcCCCCc
Q psy13351 795 LKNKILSV 802 (837)
Q Consensus 795 ~k~~~~s~ 802 (837)
.|++.++.
T Consensus 207 ~kngvfdp 214 (372)
T COG3524 207 IKNGVFDP 214 (372)
T ss_pred hhcCccCh
Confidence 34555543
No 283
>PRK13453 F0F1 ATP synthase subunit B; Provisional
Probab=23.97 E-value=4e+02 Score=26.52 Aligned_cols=75 Identities=16% Similarity=0.271 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 760 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 760 E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
+.|++.+..--..+++.+...-..+.++.+.+....+.. .+-++-....+...+.+.++--++++.+....+.+|
T Consensus 48 ~~R~~~I~~~l~~Ae~~~~eA~~~~~e~e~~l~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~ea~~~~~~A~~~I 123 (173)
T PRK13453 48 DKRERDINRDIDDAEQAKLNAQKLEEENKQKLKETQEEVQKILEDAKVQARQQQEQIIHEANVRANGMIETAQSEI 123 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444466666666666666666666654322 233444444555556666666666666666665554
No 284
>COG1638 DctP TRAP-type C4-dicarboxylate transport system, periplasmic component [Carbohydrate transport and metabolism]
Probab=23.94 E-value=4.2e+02 Score=29.54 Aligned_cols=103 Identities=13% Similarity=0.124 Sum_probs=68.2
Q ss_pred CCceEEEecCCcccHHHHHHHHHhcCCCcccee---cCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 713 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTI---QGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNE 789 (837)
Q Consensus 713 ~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~---~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~ 789 (837)
|++.=....+...-.-.|.|-+...|..+.|.. ....- -.+++|.|+.+.+.+++..+..+..+...-++..+
T Consensus 207 DGqEnp~~~i~~~k~~EVqky~t~tnH~~~~~~~~~s~~~w----~~L~~e~q~il~~aa~e~~~~~~~~~~~~e~~~~e 282 (332)
T COG1638 207 DGQENPLSNIYSAKLYEVQKYLTLTNHIYLPLAVLVSKAFW----DSLPEEDQTILLEAAKEAAEEQRKLVEELEDELLE 282 (332)
T ss_pred ccccCCHHHHhhccHHHHhHHhhhccccccceeeEEcHHHH----hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 443333333334446677788888888888763 22222 37999999999999999999888877777666666
Q ss_pred HHHhhhhcC-CCCchhhHh-HHHHHHHHHHHHHHH
Q psy13351 790 NLKKLLKNK-ILSVDNEYR-AQYDIQKLTDKFILE 822 (837)
Q Consensus 790 ~~kk~~k~~-~~s~D~~~~-~~~~iq~l~~~~~~~ 822 (837)
++|+. + .+-+.+... .++-.+.+.+.|.+.
T Consensus 283 ~lk~~---Gv~v~~~~~~~~~~~~~~~~~~~~~~~ 314 (332)
T COG1638 283 KLKEA---GVEVVEPDAAEAFREAAKPVYDEFAKK 314 (332)
T ss_pred HHHHC---CCEEecCCchHHHHHHHHHHHHHHHhh
Confidence 66543 3 333333333 667777777777777
No 285
>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems. Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.
Probab=23.93 E-value=1.6e+02 Score=30.80 Aligned_cols=60 Identities=22% Similarity=0.132 Sum_probs=35.4
Q ss_pred CCCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCC-CCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNH-SPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~-~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
..||.+|+..+..+ ...+.++...+||+|.+ |+.. +.....|.-+ |...+-+.....|.+
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~ 117 (270)
T cd06308 55 QGVDLLIISPNEAAPLTPVVEEAYRAGIPVILL-DRKILSDKYTAYIGA---DNYEIGRQAGEYIAN 117 (270)
T ss_pred hCCCEEEEecCchhhchHHHHHHHHCCCCEEEe-CCCCCCccceEEeec---CcHHHHHHHHHHHHH
Confidence 46898888754433 45678899999999976 4433 2222233222 444455555555544
No 286
>PRK06749 replicative DNA helicase; Provisional
Probab=23.67 E-value=6.1e+02 Score=29.31 Aligned_cols=82 Identities=7% Similarity=0.142 Sum_probs=50.4
Q ss_pred CcCcccceeCCeeEe-----eHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHH-cCCCcccCccc-C-
Q psy13351 19 MSSYIFGHRNKIHII-----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVR-AGMPFIDQRWL-G- 90 (837)
Q Consensus 19 m~~~i~g~r~g~~Ii-----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~-~~~~~v~~rw~-~- 90 (837)
+...+.|.+.|--|+ ..-||...+.-|.+.. .++..++|++.--....++..+... ++..+ .++. |
T Consensus 176 LD~~t~Gl~~G~LiiIaarPgmGKTafal~ia~~~a----~~g~~v~~fSlEMs~~ql~~R~ls~~~~i~~--~~l~~~~ 249 (428)
T PRK06749 176 LNKMTCGLQEGDFVVLGARPSMGKTAFALNVGLHAA----KSGAAVGLFSLEMSSKQLLKRMASCVGEVSG--GRLKNPK 249 (428)
T ss_pred HHHHhCCCCCCcEEEEEeCCCCCchHHHHHHHHHHH----hcCCCEEEEEeeCCHHHHHHHHHHhccCCCH--HHHhcCc
Confidence 444566777764444 7789999888887775 4577898988777777777666544 33332 1232 2
Q ss_pred CCCC--ChHHHHHHHHHH
Q psy13351 91 GLLT--NFKTIKTSIQRL 106 (837)
Q Consensus 91 G~LT--N~~~i~~~i~~~ 106 (837)
|.|+ .|..+.....++
T Consensus 250 ~~l~~~e~~~~~~a~~~l 267 (428)
T PRK06749 250 HRFAMEDWEKVSKAFAEI 267 (428)
T ss_pred ccCCHHHHHHHHHHHHHH
Confidence 3565 455454444443
No 287
>KOG0225|consensus
Probab=23.62 E-value=1.3e+02 Score=33.25 Aligned_cols=58 Identities=26% Similarity=0.335 Sum_probs=40.1
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCchhhHhHHHHHHHHHHHHHHHHHH
Q psy13351 755 PPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKL-LKNKILSVDNEYRAQYDIQKLTDKFILEINQ 825 (837)
Q Consensus 755 P~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~-~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~ 825 (837)
|-.|=++|+|+-+ +|. -||-+..+|+. ...+..+|+|+|.++++|.+..|+-++..++
T Consensus 297 Pg~sYRtReEiq~------------vR~-kRDPI~~lk~~li~~~late~ELKai~k~irkeVdeav~~A~~ 355 (394)
T KOG0225|consen 297 PGTSYRTREEIQE------------VRQ-KRDPIEGLKKRLIELGLATEEELKAIDKEIRKEVDEAVAFATA 355 (394)
T ss_pred CCcccchHHHHHH------------HHh-ccChHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4456678887643 333 34555556655 3455689999999999999999888776653
No 288
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=23.30 E-value=1.2e+02 Score=31.77 Aligned_cols=59 Identities=22% Similarity=0.177 Sum_probs=35.4
Q ss_pred CCCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCCcchhhhhhhhhhch
Q psy13351 148 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAKSIALYTKGIV 210 (837)
Q Consensus 148 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~~s~~si~~~~~~l~ 210 (837)
..+|.+|+.....+ ...++++...|||+|.+ |+..+. ..++|.-+- ...+.+.....|.
T Consensus 54 ~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~-~~~~~~~~~~~~~v~~d---~~~~g~~~~~~l~ 116 (282)
T cd06318 54 RGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVV-DSSINLEAGVVTQVQSS---NAKNGNLVGEWVV 116 (282)
T ss_pred cCCCEEEEecCCccchHHHHHHHHHCCCCEEEe-cCCCCCCcCeEEEEecC---cHHHHHHHHHHHH
Confidence 47999988754433 34678899999999987 444332 334554443 3344444444443
No 289
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=23.29 E-value=2.5e+02 Score=29.35 Aligned_cols=59 Identities=14% Similarity=0.201 Sum_probs=38.2
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDA 212 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~a 212 (837)
..+|.+|+.....+...+.++...|+|+|.+ |+.. + .+++.- .|...+.+.....|.+.
T Consensus 54 ~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~-~~~~-~-~~~~v~---~d~~~~g~~a~~~L~~~ 112 (269)
T cd06297 54 YLTDGLLLASYDLTERLAERRLPTERPVVLV-DAEN-P-RFDSFY---LDNRLGGRLAGAYLADF 112 (269)
T ss_pred cCCCEEEEecCccChHHHHHHhhcCCCEEEE-ccCC-C-CCCEEE---ECcHHHHHHHHHHHHHh
Confidence 4789999987665667788889999999988 4432 2 233322 25555555555555443
No 290
>PRK12446 undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase; Reviewed
Probab=23.28 E-value=2.4e+02 Score=31.48 Aligned_cols=34 Identities=18% Similarity=0.144 Sum_probs=26.0
Q ss_pred CCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCC
Q psy13351 149 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNH 183 (837)
Q Consensus 149 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~ 183 (837)
.||+|+-+--...-.++.-|..+++|++-. +.|+
T Consensus 91 kPdvvi~~Ggy~s~p~~~aa~~~~~p~~i~-e~n~ 124 (352)
T PRK12446 91 KPDVIFSKGGFVSVPVVIGGWLNRVPVLLH-ESDM 124 (352)
T ss_pred CCCEEEecCchhhHHHHHHHHHcCCCEEEE-CCCC
Confidence 799998876656556789999999998654 4443
No 291
>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.23 E-value=1.3e+02 Score=31.51 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=35.1
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhc
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGI 209 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l 209 (837)
..+|.+|+..+.. ...+.++...+||+|. +|.+.+...+.|.-. |...+.......|
T Consensus 57 ~~vdgiii~~~~~-~~~~~~l~~~~ipvV~-~~~~~~~~~~~~V~~---d~~~~~~~a~~~l 113 (268)
T cd06277 57 GKVDGIILLGGIS-TEYIKEIKELGIPFVL-VDHYIPNEKADCVLT---DNYSGAYAATEYL 113 (268)
T ss_pred CCCCEEEEeCCCC-hHHHHHHhhcCCCEEE-EccCCCCCCCCEEEe---cchHHHHHHHHHH
Confidence 4689999876543 3458888899999995 576654444555332 3344445444433
No 292
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=23.21 E-value=1.3e+02 Score=30.94 Aligned_cols=36 Identities=14% Similarity=0.169 Sum_probs=26.8
Q ss_pred CCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCC
Q psy13351 149 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHS 184 (837)
Q Consensus 149 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~ 184 (837)
.||+||..+.........+....+||++.+-..+..
T Consensus 60 ~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~ 95 (238)
T PF01497_consen 60 KPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPF 95 (238)
T ss_dssp --SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCS
T ss_pred CCCEEEEeccccchHHHHHHhcccceEEEeecccch
Confidence 799999887775677788888999999997555433
No 293
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=23.18 E-value=1.7e+02 Score=30.95 Aligned_cols=73 Identities=21% Similarity=0.209 Sum_probs=44.7
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-hhcCCCCchhhHhHHHHHHHHHHHHHHHHHHH
Q psy13351 754 IPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKL-LKNKILSVDNEYRAQYDIQKLTDKFILEINQL 826 (837)
Q Consensus 754 iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~-~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~ 826 (837)
-|.+|.|-|.-+.-..|.....-|.++|.+..--.+.-.+. .+...+-++-.++++++|..+-++-+.-||..
T Consensus 31 ~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~~i~~yk~kie~EL~~~C~eii~lId~~ 104 (236)
T PF00244_consen 31 NPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVKLIKDYKKKIEDELIDICNEIIRLIDKS 104 (236)
T ss_dssp SS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999999999999999999999876443322110 00001233444556666666666666666653
No 294
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.17 E-value=1.1e+02 Score=32.04 Aligned_cols=60 Identities=23% Similarity=0.232 Sum_probs=35.4
Q ss_pred CCCCEEEEecCCC--cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGY--HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~--~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
..+|.+|+..+.. ....++++...|||+|.+ |++.++..+.+..+ |....-......|.+
T Consensus 54 ~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~-~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~ 115 (273)
T cd06305 54 QKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAF-DVDSDNPKVNNTTQ---DDYSLARLSLDQLVK 115 (273)
T ss_pred cCCCEEEEecCChhhhHHHHHHHHHcCCCEEEe-cCCCCCCccceeee---chHHHHHHHHHHHHH
Confidence 4689998875532 345688999999999976 54433333444333 223444444444433
No 295
>TIGR01481 ccpA catabolite control protein A. Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.
Probab=23.06 E-value=4.1e+02 Score=28.69 Aligned_cols=125 Identities=19% Similarity=0.226 Sum_probs=0.0
Q ss_pred HHHHHHHhccCC-CeEEEEecchhhH-------HHHHHHHHHcCCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccC
Q psy13351 45 AIRYIYQLGFSK-GTLLFVGTKRQAR-------GVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNG 116 (837)
Q Consensus 45 a~~~i~~~~~~~-~~iLfv~t~~~~~-------~~v~~~a~~~~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~ 116 (837)
+.....++..+| ++|.|++...... .-..+..+..|..+....+..|..+ +..-.....++
T Consensus 164 ~~~a~~~L~~~G~~~I~~i~g~~~~~~~~~~R~~Gf~~~l~~~g~~~~~~~~~~~~~~-~~~~~~~~~~l---------- 232 (329)
T TIGR01481 164 TKEAVGELIAKGHKSIAFVGGPLSDSINGEDRLEGYKEALNKAGIQFGEDLVCEGKYS-YDAGYKAFAEL---------- 232 (329)
T ss_pred HHHHHHHHHHCCCCeEEEEecCcccccchHHHHHHHHHHHHHcCCCCCcceEEecCCC-hHHHHHHHHHH----------
Q ss_pred ccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcchHHHHHhhcCC------CEEEEecCC----CCCC
Q psy13351 117 SIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNI------PIIGVVDTN----HSPD 186 (837)
Q Consensus 117 ~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~~l~I------P~i~l~Dtn----~~~~ 186 (837)
+...|+.||+.+..--.-+++.+...|+ -+||+-|+. ..|.
T Consensus 233 -----------------------------l~~~p~ai~~~~d~~A~g~~~al~~~g~~vP~dvsvvgfd~~~~~~~~~p~ 283 (329)
T TIGR01481 233 -----------------------------KGSLPTAVFVASDEMAAGILNAAMDAGIKVPEDLEVITSNNTRLTEMVRPQ 283 (329)
T ss_pred -----------------------------hCCCCCEEEEcCcHHHHHHHHHHHHcCCCCCCceEEEeeCCchHHhhcCCC
Q ss_pred cceEEccCCCcchhhhhhhhhhc
Q psy13351 187 GINYVIPGNDDSAKSIALYTKGI 209 (837)
Q Consensus 187 ~i~ypIP~N~~s~~si~~~~~~l 209 (837)
+.++-.|...=...++.+++..+
T Consensus 284 lttv~~~~~~~g~~Av~~L~~~i 306 (329)
T TIGR01481 284 LSTIIQPLYDIGAVAMRLLTKYM 306 (329)
T ss_pred CcEEecCHHHHHHHHHHHHHHHh
No 296
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=23.04 E-value=1.4e+02 Score=31.69 Aligned_cols=59 Identities=17% Similarity=0.265 Sum_probs=37.6
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
..+|.+|+.....+...++++...|||+|.+ |+..+ ..+.|.-+ |...+-+.....|.+
T Consensus 55 ~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~-~~~~~-~~~~~v~~---d~~~~g~~~~~~L~~ 113 (283)
T cd06279 55 ALVDGFIVYGVPRDDPLVAALLRRGLPVVVV-DQPLP-PGVPSVGI---DDRAAAREAARHLLD 113 (283)
T ss_pred cCCCEEEEeCCCCChHHHHHHHHcCCCEEEE-ecCCC-CCCCEEee---CcHHHHHHHHHHHHH
Confidence 4789888876555556789999999999976 66544 23444333 344455555555544
No 297
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=22.98 E-value=3.5e+02 Score=27.90 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 759 KERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 759 ~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
.+|++.+.+. =..+++.+........++.+.+.+.+... .+-++-...+++..+.+.++--++++.+.++.+.+|
T Consensus 78 ~~R~~~I~~~-L~~Ae~~~~eA~~~l~e~e~~L~~A~~eA~~Ii~~A~~eAe~~~e~i~~~A~~eae~ii~~A~~~I 153 (205)
T PRK06231 78 NKRKELIEAE-INQANELKQQAQQLLENAKQRHENALAQAKEIIDQANYEALQLKSELEKEANRQANLIIFQARQEI 153 (205)
T ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444333 33355555555555555555555443211 233344445555666666677777777777666655
No 298
>TIGR01685 MDP-1 magnesium-dependent phosphatase-1. This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.
Probab=22.97 E-value=1.3e+02 Score=30.10 Aligned_cols=68 Identities=16% Similarity=0.134 Sum_probs=35.3
Q ss_pred cCCCCCCCcCcccce-e--CCee--EeeHHHHHHHH-HHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 12 TRFWNPKMSSYIFGH-R--NKIH--IINLEKTLYMY-EKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 12 ~~~wnp~m~~~i~g~-r--~g~~--Iinl~~T~~~L-~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
...|+|.|-...-+. + +++. +++....-..+ .-+..++..+. +.|.-++|.|++.....++......+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~pGv~elL~~Lk-~~G~~l~I~Sn~~~~~~~~~~L~~~~ 84 (174)
T TIGR01685 11 GTLWDHYMISLLGGPFKPVKQNNSIIIDKSGTEVTLIKEVRDVLQTLK-DAGTYLATASWNDVPEWAYEILGTFE 84 (174)
T ss_pred CCCcCcccccccCCCceeccCCCCeEEeCCCCEEEEcccHHHHHHHHH-HCCCEEEEEeCCCChHHHHHHHHhCC
Confidence 458999998654332 1 2333 55554443333 34455555553 34555566665533334444555554
No 299
>TIGR02609 doc_partner putative addiction module antidote. Members of this protein family are putative addiction module antidote proteins that appear recurringly in two-gene operons with members of the Doc (death-on-curing) family TIGR01550. Members of this family contain a SpoVT/AbrB-like domain (pfam04014). Note that the gene pairs with a member of this family tend to be found on bacterial chromosomes, not on plasmids.
Probab=22.62 E-value=2e+02 Score=24.46 Aligned_cols=38 Identities=5% Similarity=0.051 Sum_probs=29.0
Q ss_pred cCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 746 QGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKI 783 (837)
Q Consensus 746 ~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~i 783 (837)
+++.|.+.-.+.+++..+++.+.+.+..++++..+|.+
T Consensus 35 ~~~~iii~~~~~~~~~~~~~~~~~~~~~~~y~~~l~~L 72 (74)
T TIGR02609 35 EEGGLKLKRFDEGKELEKKMQMAVERAMSKYDEALKEL 72 (74)
T ss_pred ECCEEEEEECCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444334478999999999999999999998864
No 300
>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines. Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.
Probab=22.55 E-value=4.9e+02 Score=26.98 Aligned_cols=59 Identities=24% Similarity=0.266 Sum_probs=35.2
Q ss_pred CCCCEEEEecCCC--cchHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCCcchhhhhhhhhhch
Q psy13351 148 IIPDAIFIIDVGY--HKGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGNDDSAKSIALYTKGIV 210 (837)
Q Consensus 148 ~~P~~vii~~~~~--~~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~~s~~si~~~~~~l~ 210 (837)
..+|.+|+..+.. ....+.++...+||+|.+ |++.+. ..+.|.-+ |...+.+.....|.
T Consensus 55 ~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~-~~~~~~~~~~~~~V~~---d~~~~g~~~~~~l~ 117 (272)
T cd06301 55 QGVDAIIVVPVDTAATAPIVKAANAAGIPLVYV-NRRPENAPKGVAYVGS---DEVVAGRLQAEYVA 117 (272)
T ss_pred cCCCEEEEecCchhhhHHHHHHHHHCCCeEEEe-cCCCCCCCCeeEEEec---ChHHHHHHHHHHHH
Confidence 3688888875443 346788999999999965 554433 34555433 23334444444443
No 301
>PRK14089 ipid-A-disaccharide synthase; Provisional
Probab=22.48 E-value=1e+02 Score=34.55 Aligned_cols=32 Identities=16% Similarity=0.223 Sum_probs=25.8
Q ss_pred CCCCEEEEecCC-CcchHHHHHhhc--CCCEEEEe
Q psy13351 148 IIPDAIFIIDVG-YHKGAVSEAIKL--NIPIIGVV 179 (837)
Q Consensus 148 ~~P~~vii~~~~-~~~~ai~Ea~~l--~IP~i~l~ 179 (837)
..||++|++|-. =|....+.+.+. |||+|-.+
T Consensus 75 ~~pd~~i~iD~p~Fnl~lak~~k~~~~~i~viyyi 109 (347)
T PRK14089 75 KQADKVLLMDSSSFNIPLAKKIKKAYPKKEIIYYI 109 (347)
T ss_pred cCCCEEEEeCCCCCCHHHHHHHHhcCCCCCEEEEE
Confidence 589999999854 566688899998 69987664
No 302
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.35 E-value=1.2e+02 Score=31.60 Aligned_cols=60 Identities=15% Similarity=0.153 Sum_probs=36.6
Q ss_pred CCCCEEEEecCCCc-----chHHHHHhhcCCCEEEEecCCCCC-CcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYH-----KGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~-----~~ai~Ea~~l~IP~i~l~Dtn~~~-~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|++.+..+ ..++.++.+.+||+|.+ |++.+. ..+++... |...+....+..|.+
T Consensus 54 ~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i-~~~~~~~~~~~~V~~---d~~~~~~~~~~~l~~ 119 (273)
T cd06292 54 RGVRGVVFISSLHADTHADHSHYERLAERGLPVVLV-NGRAPPPLKVPHVST---DDALAMRLAVRHLVA 119 (273)
T ss_pred cCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEE-cCCCCCCCCCCEEEE---CcHHHHHHHHHHHHH
Confidence 47899998754322 23488999999999987 554432 22444333 445555555555554
No 303
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=22.31 E-value=3.7e+02 Score=27.00 Aligned_cols=65 Identities=11% Similarity=-0.002 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13351 769 IKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833 (837)
Q Consensus 769 ~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 833 (837)
+.+.-.+++..+...|.++.+.++...+.. ...+.....++++.+.+..+.-..++.--+...++
T Consensus 74 A~~~~~e~e~~L~~A~~ea~~ii~~A~~~ae~~~~~il~~A~~ea~~~~~~a~~~ie~Ek~~a~~~ 139 (184)
T CHL00019 74 AIEKLEKARARLRQAELEADEIRVNGYSEIEREKENLINQAKEDLERLENYKNETIRFEQQRAINQ 139 (184)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344445566666666665555554322 13344555666677766666666666544443333
No 304
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=22.14 E-value=7.8e+02 Score=24.43 Aligned_cols=56 Identities=20% Similarity=0.296 Sum_probs=36.8
Q ss_pred cccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecch---hhHHHHHHHHHHcCCCcccCcc
Q psy13351 22 YIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKR---QARGVIANEAVRAGMPFIDQRW 88 (837)
Q Consensus 22 ~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~---~~~~~v~~~a~~~~~~~v~~rw 88 (837)
.++|.+...-+ ..+.....|++| +.-++++|..- .+.+.+.+++++.|.+.+..-.
T Consensus 5 ~~~g~~~a~~~-~p~~aa~lLk~A----------KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 5 AISGPKHATLV-SPKLVAMMIKRA----------KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred ccCCccccccc-CHHHHHHHHHcC----------CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 45555543322 666655555432 45677778644 6888999999999998887643
No 305
>PRK05412 putative nucleotide-binding protein; Reviewed
Probab=22.03 E-value=83 Score=31.04 Aligned_cols=80 Identities=21% Similarity=0.339 Sum_probs=49.1
Q ss_pred hHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEE-ecCCcccHHHHHHHHHhcC
Q psy13351 660 NTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISI-QPFEKEMSSIIKKAINEAN 738 (837)
Q Consensus 660 ~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i-~~~d~~~~~~I~kaI~~s~ 738 (837)
+-+-+++...+-|...+.+ - ..++..||--+++. ..-..+-+ ++.+ .--|....+.|.++|.++.
T Consensus 51 ~~d~kl~~v~diL~~kl~K--R-~i~~k~ld~~~~e~----~sG~~vrq-------~i~lk~GI~~e~AKkIvK~IKd~k 116 (161)
T PRK05412 51 ESDFQLKQVKDILRSKLIK--R-GIDLKALDYGKVEK----ASGKTVKQ-------EVKLKQGIDQELAKKIVKLIKDSK 116 (161)
T ss_pred CCHHHHHHHHHHHHHHHHH--c-CCCHHHcCCCCccc----cCCCEEEE-------EEehhhccCHHHHHHHHHHHHhcC
Confidence 3444566667777766633 2 23455555322211 11111111 1222 3347788999999999999
Q ss_pred CCccceecCCeeEEe
Q psy13351 739 LGLNPTIQGNIIYVS 753 (837)
Q Consensus 739 l~~~p~~~~~~i~v~ 753 (837)
+-++++..|+.+||+
T Consensus 117 lKVqa~IQGd~vRVt 131 (161)
T PRK05412 117 LKVQAQIQGDQVRVT 131 (161)
T ss_pred CceeEEecCcEEEEe
Confidence 999999999999975
No 306
>PRK07352 F0F1 ATP synthase subunit B; Validated
Probab=21.98 E-value=3.9e+02 Score=26.56 Aligned_cols=70 Identities=9% Similarity=0.084 Sum_probs=36.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13351 764 EIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833 (837)
Q Consensus 764 ~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 833 (837)
+..+.+.+.-++++..+.+.|.++..-+...++.. ..-++....++++++.+.++....|+..-+...++
T Consensus 64 ~~~~ea~~~~~~~~~~L~~a~~ea~~ii~~a~~~a~~~~~~~~~~A~~e~~~~~~~a~~~i~~e~~~a~~~ 134 (174)
T PRK07352 64 ERLRQAAQALAEAQQKLAQAQQEAERIRADAKARAEAIRAEIEKQAIEDMARLKQTAAADLSAEQERVIAQ 134 (174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444455555555555555544444433322 13345556677777777777777666654444333
No 307
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=21.78 E-value=2.6e+02 Score=28.99 Aligned_cols=32 Identities=16% Similarity=0.191 Sum_probs=23.4
Q ss_pred CCCEEEEe----cCC---CcchHHHHHhhcCCCEEEEec
Q psy13351 149 IPDAIFII----DVG---YHKGAVSEAIKLNIPIIGVVD 180 (837)
Q Consensus 149 ~P~~vii~----~~~---~~~~ai~Ea~~l~IP~i~l~D 180 (837)
.+|.||+. +|. .+...+++|...++|+.|||=
T Consensus 46 ~~dgliisGGp~~~~~~~~~~~~i~~~~~~~~PiLGIC~ 84 (214)
T PRK07765 46 QFDGVLLSPGPGTPERAGASIDMVRACAAAGTPLLGVCL 84 (214)
T ss_pred CCCEEEECCCCCChhhcchHHHHHHHHHhCCCCEEEEcc
Confidence 57777776 332 234678899888999999983
No 308
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=21.75 E-value=2.3e+02 Score=28.88 Aligned_cols=25 Identities=8% Similarity=0.022 Sum_probs=15.9
Q ss_pred EEEEecchhhHHHHHHHHHHcCCCc
Q psy13351 59 LLFVGTKRQARGVIANEAVRAGMPF 83 (837)
Q Consensus 59 iLfv~t~~~~~~~v~~~a~~~~~~~ 83 (837)
||+|.+...+..-+.....+.|...
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v 26 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQEL 26 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcE
Confidence 6777777766665555555556544
No 309
>PF15605 Toxin_52: Putative toxin 52
Probab=21.72 E-value=3.5e+02 Score=24.66 Aligned_cols=50 Identities=18% Similarity=0.221 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy13351 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 828 (837)
Q Consensus 774 e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~ 828 (837)
.++-..+||+++. +++..++..+|++...-++.++++.+ .++++|+++|.
T Consensus 53 ~da~~GL~n~~~~----le~~L~np~l~~~~r~~lq~~l~ea~-~~l~kiE~~~~ 102 (103)
T PF15605_consen 53 QDAYRGLVNRKRT----LEGSLKNPNLSGRTRELLQSKLNEAN-NYLDKIEDFFP 102 (103)
T ss_pred HHHHHHHHHHHHH----HHHhcCCCCCchHHHHHHHHHHHHHH-HHHHHHHHHhc
Confidence 3556678887765 45545677788888888999888754 68899998875
No 310
>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional
Probab=21.66 E-value=9.1e+02 Score=25.48 Aligned_cols=37 Identities=14% Similarity=0.032 Sum_probs=24.3
Q ss_pred HHHHHHHhccCCCeEEEEecchh--hHHHHHHHHHHcCC
Q psy13351 45 AIRYIYQLGFSKGTLLFVGTKRQ--ARGVIANEAVRAGM 81 (837)
Q Consensus 45 a~~~i~~~~~~~~~iLfv~t~~~--~~~~v~~~a~~~~~ 81 (837)
|..+|..+..+|-++.||.+|.. .....+.+.+..|.
T Consensus 119 a~elL~~L~~~G~~I~iVTnR~~~k~~~t~~~Llk~~gi 157 (237)
T PRK11009 119 ARQLIDMHVKRGDSIYFITGRTATKTETVSKTLADDFHI 157 (237)
T ss_pred HHHHHHHHHHCCCeEEEEeCCCCcccHHHHHHHHHHcCC
Confidence 67777777777778888888763 33444555555555
No 311
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.60 E-value=3e+02 Score=28.48 Aligned_cols=58 Identities=17% Similarity=0.155 Sum_probs=38.5
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
..+|.+++..+..+...++++...+||+|.+ |.+.+ ...|. ..|...+.+.....|..
T Consensus 54 ~~~dgiii~~~~~~~~~~~~~~~~~iPvv~~-~~~~~--~~~~V---~~d~~~ag~~a~~~L~~ 111 (265)
T cd06285 54 RRVDGLILGDARSDDHFLDELTRRGVPFVLV-LRHAG--TSPAV---TGDDVLGGRLATRHLLD 111 (265)
T ss_pred cCCCEEEEecCCCChHHHHHHHHcCCCEEEE-ccCCC--CCCEE---EeCcHHHHHHHHHHHHH
Confidence 4789999887666667789999999999777 44332 23332 33555666666665544
No 312
>PF13801 Metal_resist: Heavy-metal resistance; PDB: 3EPV_C 2Y3D_A 2Y3H_D 2Y3G_B 2Y3B_A 2Y39_A 3LAY_H.
Probab=21.59 E-value=5.8e+02 Score=22.73 Aligned_cols=70 Identities=17% Similarity=0.202 Sum_probs=42.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHH
Q psy13351 755 PPLTKERREEIVKLIKNITEETKI---SIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLI 828 (837)
Q Consensus 755 P~~T~E~R~~l~k~~k~~~e~~k~---~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~ 828 (837)
..+|+|.++++-+...+...+.+. .+|..|.+. ..+.......++.+..+-+++..+..+.-....+.+-
T Consensus 40 l~Lt~eQ~~~l~~~~~~~~~~~~~~r~~~~~~r~~l----~~ll~~~~~D~~~i~a~~~~~~~~~~~l~~~~~~~~~ 112 (125)
T PF13801_consen 40 LNLTPEQQAKLRALMDEFRQEMRALRQELRAARQEL----RALLAAPPPDEAAIEALLEEIREAQAELRQERLEHLL 112 (125)
T ss_dssp S-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHCCSSS-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 468999999888777766655444 444444444 3333334467777777777777777666665555443
No 313
>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.42 E-value=1.5e+02 Score=30.84 Aligned_cols=35 Identities=17% Similarity=0.204 Sum_probs=25.3
Q ss_pred CCCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCC
Q psy13351 148 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNH 183 (837)
Q Consensus 148 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~ 183 (837)
..+|.+|+.....+ ...+.++...+||+|.+ |+..
T Consensus 55 ~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~-~~~~ 91 (275)
T cd06317 55 QKVDGIILWPTDGQAYIPGLRKAKQAGIPVVIT-NSNI 91 (275)
T ss_pred cCCCEEEEecCCccccHHHHHHHHHCCCcEEEe-CCCC
Confidence 46899988765433 35679999999999955 5543
No 314
>PRK00025 lpxB lipid-A-disaccharide synthase; Reviewed
Probab=21.08 E-value=3e+02 Score=30.60 Aligned_cols=30 Identities=27% Similarity=0.304 Sum_probs=21.6
Q ss_pred CCCEEEEecCC-CcchHHHHHhhcCCCEEEE
Q psy13351 149 IPDAIFIIDVG-YHKGAVSEAIKLNIPIIGV 178 (837)
Q Consensus 149 ~P~~vii~~~~-~~~~ai~Ea~~l~IP~i~l 178 (837)
.||+|++++.. -.......|.+.|||++-.
T Consensus 85 kPdivi~~~~~~~~~~~a~~a~~~~ip~i~~ 115 (380)
T PRK00025 85 PPDVFIGIDAPDFNLRLEKKLRKAGIPTIHY 115 (380)
T ss_pred CCCEEEEeCCCCCCHHHHHHHHHCCCCEEEE
Confidence 79999998732 2334456778889998855
No 315
>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.
Probab=21.05 E-value=6.7e+02 Score=26.02 Aligned_cols=46 Identities=22% Similarity=0.139 Sum_probs=32.5
Q ss_pred CCCEEEEecCCCcchHHHHHhhcCCCEEEEecCC----CCCCcceEEccC
Q psy13351 149 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTN----HSPDGINYVIPG 194 (837)
Q Consensus 149 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn----~~~~~i~ypIP~ 194 (837)
-||.||+.+-.--.-+++++..+|+-+||+-|+. +.|...++-.|.
T Consensus 179 ~~~ai~~~~d~~A~gv~~al~~~gv~vigfD~~~~~~~~~p~lttv~~~~ 228 (260)
T cd06304 179 GADVIFAAAGGTGPGVIQAAKEAGVYAIGVDSDQSALAPDAVLTSAVKNV 228 (260)
T ss_pred CCCEEEEcCCCCchHHHHHHHHcCCEEEeecCchhhhcCccEEEEEEecc
Confidence 4899988877777789999999998888876653 234444444443
No 316
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=20.92 E-value=1.6e+02 Score=30.52 Aligned_cols=59 Identities=19% Similarity=0.149 Sum_probs=37.3
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+-+|.+|+.....+...++++...+||+|.+ |+..+ ..++|.-+ |...+.+..+..|.+
T Consensus 50 ~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~-~~~~~-~~~~~V~~---d~~~~~~~~~~~l~~ 108 (261)
T cd06272 50 NRFDGVIIFGESASDVEYLYKIKLAIPVVSY-GVDYD-LKYPIVNV---DNEKAMELAVLYLAE 108 (261)
T ss_pred cCcCEEEEeCCCCChHHHHHHHHcCCCEEEE-cccCC-CCCCEEEE---ChHHHHHHHHHHHHH
Confidence 4689999887666656678888999999976 55433 23444332 334455555555543
No 317
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=20.71 E-value=3.8e+02 Score=24.89 Aligned_cols=73 Identities=15% Similarity=0.161 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC-CCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy13351 762 REEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK-ILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKEI 834 (837)
Q Consensus 762 R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~-~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kekei 834 (837)
|++-++.--..+++.+...-..+.++.+.++...... .+-++-...+++..+....+.-++++.+....+.+|
T Consensus 31 R~~~I~~~~~~a~~~~~ea~~~~~e~~~~l~~a~~ea~~i~~~a~~~a~~~~~~~~~ea~~~~~~~~~~a~~~i 104 (132)
T PF00430_consen 31 RKAKIQSELEEAEELKEEAEQLLAEYEEKLAEAREEAQEIIEEAKEEAEKEKEEILAEAEKEAERIIEQAEAEI 104 (132)
T ss_dssp -S-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444466666666666667766666664432 133444445556666666666666666666655554
No 318
>PRK05748 replicative DNA helicase; Provisional
Probab=20.59 E-value=9.1e+02 Score=27.92 Aligned_cols=74 Identities=15% Similarity=0.165 Sum_probs=47.7
Q ss_pred CCcCcccceeCC-eeEe----eHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHH-HHcCCCcccCcccCC
Q psy13351 18 KMSSYIFGHRNK-IHII----NLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLGG 91 (837)
Q Consensus 18 ~m~~~i~g~r~g-~~Ii----nl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~G 91 (837)
.+...+.|.+.| ..+| ..-||...+.-|++... .++..++|++.--....++..+. ..++..+ .++..|
T Consensus 192 ~LD~~~~G~~~G~livIaarpg~GKT~~al~ia~~~a~---~~g~~v~~fSlEms~~~l~~R~l~~~~~v~~--~~i~~~ 266 (448)
T PRK05748 192 DLDKMTSGLQPNDLIIVAARPSVGKTAFALNIAQNVAT---KTDKNVAIFSLEMGAESLVMRMLCAEGNIDA--QRLRTG 266 (448)
T ss_pred HHHHhcCCCCCCceEEEEeCCCCCchHHHHHHHHHHHH---hCCCeEEEEeCCCCHHHHHHHHHHHhcCCCH--HHhhcC
Confidence 344556677766 4444 56789888877766532 34778999988888888877774 4444332 235678
Q ss_pred CCCCh
Q psy13351 92 LLTNF 96 (837)
Q Consensus 92 ~LTN~ 96 (837)
.|+..
T Consensus 267 ~l~~~ 271 (448)
T PRK05748 267 QLTDD 271 (448)
T ss_pred CCCHH
Confidence 88753
No 319
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.52 E-value=6.9e+02 Score=24.72 Aligned_cols=30 Identities=13% Similarity=0.115 Sum_probs=23.2
Q ss_pred CCCCEEEEe--cCCCcchHHHHHhhcCCCEEEE
Q psy13351 148 IIPDAIFII--DVGYHKGAVSEAIKLNIPIIGV 178 (837)
Q Consensus 148 ~~P~~vii~--~~~~~~~ai~Ea~~l~IP~i~l 178 (837)
.-||+|++- .|..|..+.+=...++-| +.+
T Consensus 100 ~~pdiv~vglG~PkQE~~~~~~~~~l~~~-v~i 131 (172)
T PF03808_consen 100 SGPDIVFVGLGAPKQERWIARHRQRLPAG-VII 131 (172)
T ss_pred cCCCEEEEECCCCHHHHHHHHHHHHCCCC-EEE
Confidence 489999887 677888888877888888 444
No 320
>PF12614 RRF_GI: Ribosome recycling factor ; InterPro: IPR022253 This family of proteins is found in bacteria and viruses. Proteins in this family are approximately 130 amino acids in length. There are two conserved sequence motifs: LPS and LKR. Overproduction of ribosome recycling factor (RRF) reduces tna operon expression and increases the rate of cleavage of TnaC-tRNA(2)(Pro), relieving the growth inhibition associated with plasmid-mediated tnaC overexpression.
Probab=20.38 E-value=3.5e+02 Score=25.74 Aligned_cols=45 Identities=24% Similarity=0.396 Sum_probs=35.1
Q ss_pred CeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 748 NIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLK 792 (837)
Q Consensus 748 ~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~k 792 (837)
..|.|++|.+=--.=.+-+|++|..+-+..-.+.+|||.-+=.+.
T Consensus 3 ~~i~I~LpSlIHRig~~~~k~~ka~A~q~~CeLKRVRRSRnWql~ 47 (128)
T PF12614_consen 3 EDITIPLPSLIHRIGREAVKQAKALARQHGCELKRVRRSRNWQLS 47 (128)
T ss_pred cceeeccHHHHHHhhHHHHHHHHHHHHHhCchHHHHHHhhhhHHh
Confidence 356677776654444788999999999999999999998765554
No 321
>PRK13259 regulatory protein SpoVG; Reviewed
Probab=20.31 E-value=6.4e+02 Score=22.73 Aligned_cols=76 Identities=21% Similarity=0.317 Sum_probs=43.8
Q ss_pred eeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCcc---ce---ecCCeeEEeCCCCCHHHHHH
Q psy13351 691 NIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLN---PT---IQGNIIYVSIPPLTKERREE 764 (837)
Q Consensus 691 ~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~---p~---~~~~~i~v~iP~~T~E~R~~ 764 (837)
.|+|......-.|+-+|+|+..|. ++|. .++-| . +.-|+- |. .+|..=-|.- |+|.|.|++
T Consensus 5 dVri~~~~~~g~lka~asit~dd~--fvI~-----~ikVi----e-g~~GlFVaMPs~k~~~g~y~DI~~-Pit~e~Re~ 71 (94)
T PRK13259 5 DVRLRKVNTEGRMKAIVSITFDNE--FVVH-----DIRVI----E-GNNGLFIAMPSKRTPDGEFRDIAH-PINSDTREK 71 (94)
T ss_pred EEEEEEeCCCCcEEEEEEEEECCE--EEEe-----eeEEE----E-CCCCeEEECcCcCCCCCcEEEEEc-cCCHHHHHH
Confidence 455554433346899999998883 3332 22222 1 222433 22 2343333333 579999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy13351 765 IVKLIKNITEETKIS 779 (837)
Q Consensus 765 l~k~~k~~~e~~k~~ 779 (837)
|-..+-+..+++...
T Consensus 72 i~~aVl~aY~~~~~~ 86 (94)
T PRK13259 72 IQDAILKEYERVGEE 86 (94)
T ss_pred HHHHHHHHHHHHHhh
Confidence 998887777666543
No 322
>PRK13460 F0F1 ATP synthase subunit B; Provisional
Probab=20.29 E-value=4.5e+02 Score=26.13 Aligned_cols=61 Identities=8% Similarity=0.123 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCC-CCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 770 KNITEETKISIRKIRRDSNENLKKLLKNKI-LSVDNEYRAQYDIQKLTDKFILEINQLLINK 830 (837)
Q Consensus 770 k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~-~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 830 (837)
.+.-++++..+...|.++..-+....++.. .-+.-...++++.+.+.+..-.+++..-+..
T Consensus 67 ~~~~~e~e~~l~~a~~ea~~ii~~A~~ea~~~~~~~~~~A~~ea~~~~~~a~~~ie~e~~~a 128 (173)
T PRK13460 67 EALLKDYEARLNSAKDEANAIVAEAKSDALKLKNKLLEETNNEVKAQKDQAVKEIELAKGKA 128 (173)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444555555555555444433221 3445555566666666666666666544433
No 323
>TIGR00215 lpxB lipid-A-disaccharide synthase. Lipid-A precursor biosynthesis producing lipid A disaccharide in a condensation reaction. transcribed as part of an operon including lpxA
Probab=20.23 E-value=2.8e+02 Score=31.43 Aligned_cols=29 Identities=24% Similarity=0.115 Sum_probs=22.4
Q ss_pred CCCEEEEecCCCcch--HHHHHhhcCCCEEEE
Q psy13351 149 IPDAIFIIDVGYHKG--AVSEAIKLNIPIIGV 178 (837)
Q Consensus 149 ~P~~vii~~~~~~~~--ai~Ea~~l~IP~i~l 178 (837)
.||+||.+|- -.-. ..+-|..+|||+|-.
T Consensus 89 kPd~vi~~g~-~~~~~~~a~aa~~~gip~v~~ 119 (385)
T TIGR00215 89 KPDLLVGIDA-PDFNLTKELKKKDPGIKIIYY 119 (385)
T ss_pred CCCEEEEeCC-CCccHHHHHHHhhCCCCEEEE
Confidence 7999999994 3333 556889999999844
Done!