Query psy13351
Match_columns 837
No_of_seqs 633 out of 4876
Neff 7.5
Searched_HMMs 29240
Date Fri Aug 16 17:13:02 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13351.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13351hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3bbn_B Ribosomal protein S2; s 100.0 6.3E-69 2.2E-73 549.4 18.7 218 1-218 9-226 (231)
2 2vqe_B 30S ribosomal protein S 100.0 8.1E-69 2.8E-73 554.9 15.8 218 1-218 10-227 (256)
3 3r8n_B 30S ribosomal protein S 100.0 1.3E-69 4.5E-74 550.5 6.8 217 1-217 1-217 (218)
4 1dd5_A Ribosome recycling fact 100.0 6.2E-56 2.1E-60 436.7 22.7 184 654-837 2-185 (185)
5 4gfq_A Ribosome-recycling fact 100.0 4.1E-56 1.4E-60 442.5 21.7 186 652-837 24-209 (209)
6 1ise_A Ribosome recycling fact 100.0 6.6E-56 2.3E-60 436.5 21.9 184 654-837 2-185 (185)
7 1is1_A Ribosome recycling fact 100.0 9.2E-56 3.1E-60 436.2 22.7 184 654-837 2-185 (185)
8 1wqg_A Ribosome recycling fact 100.0 9.2E-56 3.1E-60 436.1 22.4 184 654-837 2-185 (185)
9 1eh1_A Ribosome recycling fact 100.0 7.9E-56 2.7E-60 435.9 19.6 184 653-836 2-185 (185)
10 1ge9_A Ribosome recycling fact 100.0 5.6E-54 1.9E-58 422.5 21.2 180 654-837 5-184 (184)
11 3bch_A 40S ribosomal protein S 100.0 5.2E-54 1.8E-58 440.0 12.5 170 1-219 51-221 (253)
12 1vi6_A 30S ribosomal protein S 100.0 6.3E-54 2.2E-58 430.0 12.2 169 1-219 16-185 (208)
13 2xzm_B RPS0E; ribosome, transl 100.0 3.9E-53 1.3E-57 433.5 13.7 170 1-219 13-184 (241)
14 3j20_B 30S ribosomal protein S 100.0 7E-53 2.4E-57 421.2 14.3 169 1-219 12-181 (202)
15 3u5c_A 40S ribosomal protein S 100.0 7.1E-53 2.4E-57 431.3 12.8 170 1-219 17-187 (252)
16 2zkq_b 40S ribosomal protein S 100.0 7.9E-53 2.7E-57 440.2 13.1 170 1-219 18-188 (295)
17 3iz6_A 40S ribosomal protein S 100.0 8.2E-52 2.8E-56 428.5 13.9 170 1-219 22-192 (305)
18 1xb2_B EF-TS, elongation facto 100.0 1.1E-50 3.9E-55 428.1 20.7 190 215-405 4-231 (291)
19 3avx_A Elongation factor TS, e 100.0 1.3E-48 4.4E-53 473.6 13.1 211 215-440 5-215 (1289)
20 1aip_C EF-TS, elongation facto 100.0 1.5E-45 5.2E-50 362.5 15.9 145 216-360 4-196 (196)
21 3ek6_A Uridylate kinase; UMPK 100.0 3.1E-37 1.1E-41 323.8 19.6 233 414-648 9-241 (243)
22 4a7w_A Uridylate kinase; trans 100.0 3.1E-36 1.1E-40 315.8 20.3 232 414-647 7-240 (240)
23 3nwy_A Uridylate kinase; allos 100.0 3.9E-36 1.3E-40 319.8 20.4 231 414-647 50-280 (281)
24 1ybd_A Uridylate kinase; alpha 100.0 8.6E-34 3E-38 298.0 19.3 232 415-648 8-239 (239)
25 2jjx_A Uridylate kinase, UMP k 100.0 8.5E-34 2.9E-38 300.6 18.2 234 414-649 12-247 (255)
26 2a1f_A Uridylate kinase; PYRH, 100.0 2E-33 6.7E-38 296.5 19.2 232 415-648 9-240 (247)
27 1z9d_A Uridylate kinase, UK, U 100.0 8.2E-33 2.8E-37 292.6 19.5 233 415-649 8-241 (252)
28 2va1_A Uridylate kinase; UMPK, 100.0 8.9E-33 3E-37 292.8 18.2 231 414-647 24-255 (256)
29 2j4j_A Uridylate kinase; trans 100.0 1.5E-31 5E-36 278.6 17.1 211 417-648 3-225 (226)
30 2brx_A Uridylate kinase; UMP k 100.0 2.4E-31 8.2E-36 279.8 13.4 215 414-648 19-244 (244)
31 2ij9_A Uridylate kinase; struc 100.0 1.8E-29 6.2E-34 261.5 15.9 193 438-647 16-219 (219)
32 3ll9_A Isopentenyl phosphate k 100.0 6.2E-29 2.1E-33 264.8 16.0 228 416-647 4-266 (269)
33 2j5v_A Glutamate 5-kinase; pro 100.0 9E-29 3.1E-33 273.8 15.3 230 415-649 5-258 (367)
34 3ll5_A Gamma-glutamyl kinase r 99.9 3E-28 1E-32 256.7 12.2 221 415-646 4-248 (249)
35 2rd5_A Acetylglutamate kinase- 99.9 1.1E-27 3.6E-32 259.4 16.5 222 415-648 37-298 (298)
36 1wih_A Mitochondrial ribosome 99.9 5.3E-29 1.8E-33 212.3 4.0 82 682-763 1-83 (84)
37 2ako_A Glutamate 5-kinase; str 99.9 1.2E-27 4E-32 253.1 15.2 223 416-647 3-251 (251)
38 2ap9_A NAG kinase, acetylgluta 99.9 9.6E-28 3.3E-32 259.9 14.5 224 415-650 26-292 (299)
39 2v5h_A Acetylglutamate kinase; 99.9 2.4E-27 8.1E-32 258.6 16.1 223 415-649 50-311 (321)
40 2ogx_A Molybdenum storage prot 99.9 3.7E-27 1.3E-31 252.0 15.8 216 416-650 41-273 (276)
41 3lf9_A 4E10_D0_1IS1A_001_C (T1 99.9 9.8E-27 3.3E-31 206.7 15.7 112 654-837 2-113 (121)
42 3d40_A FOMA protein; fosfomyci 99.9 1.2E-27 4.2E-32 257.0 9.5 244 390-649 9-283 (286)
43 2ogx_B Molybdenum storage prot 99.9 2.8E-26 9.7E-31 244.6 17.5 214 416-648 38-269 (270)
44 2bty_A Acetylglutamate kinase; 99.9 1.6E-26 5.4E-31 248.5 15.3 220 415-650 22-281 (282)
45 3k4o_A Isopentenyl phosphate k 99.9 6.9E-27 2.4E-31 248.3 10.8 222 417-649 9-265 (266)
46 2egx_A Putative acetylglutamat 99.9 4.1E-26 1.4E-30 243.4 16.8 203 440-647 13-269 (269)
47 2e9y_A Carbamate kinase; trans 99.9 5.4E-26 1.8E-30 247.7 14.6 226 415-648 5-315 (316)
48 2we5_A Carbamate kinase 1; arg 99.9 4.3E-26 1.5E-30 248.0 13.3 222 416-647 4-309 (310)
49 3ab4_A Aspartokinase; aspartat 99.9 2.9E-24 1E-28 243.2 28.4 279 437-768 15-328 (421)
50 2buf_A Acetylglutamate kinase; 99.9 1.9E-25 6.6E-30 241.8 17.3 220 415-649 27-297 (300)
51 3lhp_S 4E10_D0_1ISEA_004_N (T9 99.9 3.7E-26 1.3E-30 205.2 9.3 90 745-836 33-122 (123)
52 1e19_A Carbamate kinase-like c 99.9 1.5E-25 5E-30 243.9 14.4 224 416-648 4-314 (314)
53 3l76_A Aspartokinase; alloster 99.9 1.4E-24 4.8E-29 254.9 18.6 203 437-649 15-245 (600)
54 1tfe_A Elongation factor TS; 1 99.9 3.5E-25 1.2E-29 211.2 9.6 97 267-363 1-145 (145)
55 3kzf_A Carbamate kinase; argin 99.9 3.7E-24 1.3E-28 228.0 13.5 226 416-649 7-317 (317)
56 1gs5_A Acetylglutamate kinase; 99.9 4.6E-23 1.6E-27 218.7 17.3 203 438-647 17-257 (258)
57 3d2m_A Putative acetylglutamat 99.9 3.7E-23 1.3E-27 237.3 17.8 219 415-651 44-306 (456)
58 4axs_A Carbamate kinase; oxido 99.9 4.9E-23 1.7E-27 223.3 16.3 225 413-647 23-331 (332)
59 3l86_A Acetylglutamate kinase; 99.9 2.5E-23 8.7E-28 221.2 13.6 204 415-648 37-278 (279)
60 3zzh_A Acetylglutamate kinase; 99.9 4.7E-23 1.6E-27 221.6 13.3 201 441-650 64-303 (307)
61 3c1m_A Probable aspartokinase; 99.9 3.7E-22 1.3E-26 228.9 16.8 162 479-649 118-301 (473)
62 2cdq_A Aspartokinase; aspartat 99.9 6.6E-22 2.3E-26 227.1 18.8 267 479-754 136-466 (510)
63 4ab7_A Protein Arg5,6, mitocho 99.9 6.4E-22 2.2E-26 223.2 14.3 215 415-649 49-302 (464)
64 3s6g_A N-acetylglutamate kinas 99.9 1.2E-21 4.2E-26 221.4 13.4 203 441-650 74-312 (460)
65 2j0w_A Lysine-sensitive aspart 99.9 4.8E-21 1.7E-25 217.5 16.7 263 481-755 109-432 (449)
66 3tvi_A Aspartokinase; structur 99.8 4.8E-21 1.6E-25 216.5 14.0 256 483-756 109-423 (446)
67 3s6k_A Acetylglutamate kinase; 99.8 2.4E-21 8.1E-26 219.3 3.8 203 441-650 77-315 (467)
68 2cp9_A EF-TS, EF-TSMT, elongat 99.5 8.3E-15 2.8E-19 117.9 4.1 55 216-270 10-64 (64)
69 1xb2_B EF-TS, elongation facto 99.4 7.4E-13 2.5E-17 140.0 8.3 110 244-363 140-278 (291)
70 1tfe_A Elongation factor TS; 1 99.3 1.9E-12 6.6E-17 123.3 5.9 74 361-440 5-88 (145)
71 1aip_C EF-TS, elongation facto 99.2 1.7E-11 5.8E-16 120.9 6.7 77 359-441 57-143 (196)
72 3avx_A Elongation factor TS, e 98.9 1.7E-09 5.7E-14 132.7 8.7 86 262-363 134-266 (1289)
73 1nri_A Hypothetical protein HI 96.2 0.009 3.1E-07 64.1 8.4 105 148-252 139-281 (306)
74 1z96_A DNA-damage, UBA-domain 95.7 0.0074 2.5E-07 43.9 3.5 32 219-251 8-39 (40)
75 1wj7_A Hypothetical protein (R 95.3 0.0092 3.1E-07 52.6 3.3 38 218-255 42-79 (104)
76 2g3q_A Protein YBL047C; endocy 94.9 0.018 6.3E-07 42.6 3.4 34 219-253 8-41 (43)
77 1wgn_A UBAP1, ubiquitin associ 94.3 0.026 8.8E-07 44.4 2.9 29 226-254 29-57 (63)
78 2bwb_A Ubiquitin-like protein 93.7 0.052 1.8E-06 40.8 3.5 33 219-252 11-44 (46)
79 1ify_A HHR23A, UV excision rep 93.5 0.035 1.2E-06 42.3 2.4 33 220-253 13-45 (49)
80 2knz_A Ubiquilin-4; cytoplasm, 93.5 0.052 1.8E-06 42.1 3.4 35 219-254 15-50 (53)
81 2dna_A Unnamed protein product 93.4 0.054 1.9E-06 43.9 3.4 36 219-254 23-58 (67)
82 2jy5_A Ubiquilin-1; UBA, alter 93.2 0.064 2.2E-06 41.4 3.4 33 219-252 16-49 (52)
83 1wji_A Tudor domain containing 93.0 0.082 2.8E-06 42.6 3.9 35 219-254 13-47 (63)
84 1wr1_B Ubiquitin-like protein 92.9 0.07 2.4E-06 42.1 3.4 35 218-253 20-55 (58)
85 2dah_A Ubiquilin-3; UBA domain 92.8 0.077 2.6E-06 41.3 3.4 36 219-255 13-49 (54)
86 2dak_A Ubiquitin carboxyl-term 92.6 0.061 2.1E-06 43.3 2.7 34 220-254 14-47 (63)
87 2cpw_A CBL-interacting protein 91.9 0.11 3.8E-06 41.9 3.4 34 219-253 23-57 (64)
88 4ae4_A Ubiquitin-associated pr 91.8 0.1 3.5E-06 47.5 3.4 29 226-254 86-114 (118)
89 2crn_A Ubash3A protein; compac 91.6 0.13 4.3E-06 41.6 3.4 35 219-254 13-48 (64)
90 1whc_A RSGI RUH-027, UBA/UBX 3 91.2 0.14 4.8E-06 41.3 3.3 35 219-254 13-48 (64)
91 1vg5_A RSGI RUH-014, rhomboid 91.2 0.14 4.8E-06 42.4 3.4 28 226-253 39-66 (73)
92 1vej_A Riken cDNA 4931431F19; 91.2 0.14 4.9E-06 42.4 3.4 35 218-253 32-67 (74)
93 2yva_A DNAA initiator-associat 91.1 1.7 5.8E-05 42.5 12.0 66 148-213 108-186 (196)
94 2dai_A Ubadc1, ubiquitin assoc 90.7 0.17 5.6E-06 43.1 3.4 35 219-254 33-67 (83)
95 2dag_A Ubiquitin carboxyl-term 90.7 0.17 5.8E-06 42.1 3.4 36 219-255 13-49 (74)
96 1wiv_A UBP14, ubiquitin-specif 90.5 0.18 6.2E-06 41.8 3.4 35 219-254 33-67 (73)
97 1tr8_A Conserved protein (MTH1 90.3 0.12 4.1E-06 45.7 2.3 58 187-251 44-101 (102)
98 1veg_A NEDD8 ultimate buster-1 89.2 0.26 9E-06 41.7 3.5 29 226-254 39-67 (83)
99 2ekk_A UBA domain from E3 ubiq 88.9 0.24 8.2E-06 37.2 2.7 27 226-253 19-45 (47)
100 2dkl_A Trinucleotide repeat co 88.8 0.28 9.6E-06 41.9 3.4 34 220-254 26-59 (85)
101 2cwb_A Chimera of immunoglobul 87.9 0.38 1.3E-05 42.8 3.8 37 218-254 69-105 (108)
102 2d9s_A CBL E3 ubiquitin protei 87.5 0.53 1.8E-05 36.0 3.8 30 226-255 19-48 (53)
103 2ooa_A E3 ubiquitin-protein li 86.9 0.61 2.1E-05 35.5 3.8 29 226-254 21-49 (52)
104 1vek_A UBP14, ubiquitin-specif 86.5 0.47 1.6E-05 40.4 3.4 34 220-254 34-68 (84)
105 1dv0_A DNA repair protein HHR2 85.4 0.38 1.3E-05 36.2 2.1 27 226-252 14-40 (47)
106 4ae4_A Ubiquitin-associated pr 85.1 0.54 1.8E-05 42.7 3.3 30 226-255 18-47 (118)
107 2lbc_A Ubiquitin carboxyl-term 83.4 0.71 2.4E-05 42.4 3.4 34 219-253 82-115 (126)
108 1x92_A APC5045, phosphoheptose 82.5 10 0.00035 36.9 11.9 50 148-197 112-170 (199)
109 2lbc_A Ubiquitin carboxyl-term 82.2 0.95 3.2E-05 41.6 3.8 30 226-255 13-43 (126)
110 2oo9_A E3 ubiquitin-protein li 82.0 1.4 4.8E-05 32.5 3.7 30 226-255 14-43 (46)
111 3e21_A HFAF1, FAS-associated f 81.5 0.71 2.4E-05 34.3 2.1 33 217-249 7-40 (45)
112 1m3s_A Hypothetical protein YC 81.5 5.4 0.00018 38.5 9.3 50 148-197 78-135 (186)
113 3sho_A Transcriptional regulat 80.9 6.4 0.00022 37.9 9.6 65 149-213 87-163 (187)
114 2i2w_A Phosphoheptose isomeras 80.4 7 0.00024 38.7 9.9 47 148-194 130-182 (212)
115 1vim_A Hypothetical protein AF 79.8 4.5 0.00015 39.8 8.1 49 148-196 88-144 (200)
116 4hhu_A OR280; engineered prote 79.2 26 0.00089 31.0 11.6 132 619-776 2-150 (170)
117 2xbl_A Phosphoheptose isomeras 78.8 22 0.00076 34.3 12.9 50 148-197 115-172 (198)
118 1tk9_A Phosphoheptose isomeras 78.7 16 0.00055 35.0 11.7 50 148-197 109-166 (188)
119 3onj_A T-snare VTI1; helix, HA 76.9 7.5 0.00026 33.8 7.6 57 754-817 24-94 (97)
120 3trj_A Phosphoheptose isomeras 76.8 20 0.00067 35.2 11.8 117 40-184 30-153 (201)
121 2cos_A Serine/threonine protei 76.2 2.1 7.3E-05 32.7 3.3 30 226-255 19-49 (54)
122 1jeo_A MJ1247, hypothetical pr 75.2 10 0.00036 36.2 9.1 34 149-182 82-119 (180)
123 2juj_A E3 ubiquitin-protein li 75.0 2.2 7.5E-05 32.7 3.1 30 226-255 17-46 (56)
124 3fxa_A SIS domain protein; str 74.8 5 0.00017 39.4 6.8 48 148-195 91-146 (201)
125 1vdl_A Ubiquitin carboxyl-term 73.9 2.3 7.9E-05 34.6 3.1 37 218-254 27-64 (80)
126 3lay_A Zinc resistance-associa 73.5 30 0.001 33.4 11.6 77 756-833 67-143 (175)
127 1oai_A Nuclear RNA export fact 73.2 2.7 9.3E-05 33.1 3.4 37 217-253 9-45 (59)
128 2lva_A Ubiquitin carboxyl-term 75.3 0.72 2.5E-05 41.4 0.0 40 218-257 21-61 (129)
129 2jp7_A MRNA export factor MEX6 70.6 2.6 9E-05 33.0 2.7 38 217-254 8-45 (57)
130 1v92_A NSFL1 cofactor P47; 3-h 70.3 2.8 9.4E-05 31.0 2.7 36 218-253 8-43 (46)
131 2dam_A ETEA protein; KIAA0887, 67.9 3.1 0.00011 33.7 2.7 36 218-253 21-57 (67)
132 3etn_A Putative phosphosugar i 67.6 24 0.00083 35.0 10.1 38 148-185 105-148 (220)
133 3s2u_A UDP-N-acetylglucosamine 67.5 25 0.00085 37.8 10.9 36 149-185 92-127 (365)
134 3tuf_A Stage III sporulation p 67.4 18 0.00063 35.4 8.6 61 770-830 82-144 (197)
135 2cp8_A NEXT to BRCA1 gene 1 pr 67.1 3.3 0.00011 32.0 2.5 35 220-254 14-48 (54)
136 2dal_A Protein KIAA0794; FAS a 65.5 3.7 0.00013 32.6 2.7 37 218-254 18-54 (62)
137 3jx9_A Putative phosphoheptose 62.1 24 0.0008 34.0 8.2 28 40-67 22-49 (170)
138 1otr_A Protein CUE2; protein-p 61.5 5.4 0.00018 30.2 2.8 28 227-254 17-44 (49)
139 2dzl_A Protein FAM100B; UBA-li 57.4 5.5 0.00019 32.1 2.4 36 218-253 20-55 (66)
140 4dbg_B Ring finger protein 31; 53.1 11 0.00036 35.7 3.8 39 218-256 105-143 (162)
141 3fxb_A Trap dicarboxylate tran 52.9 43 0.0015 35.5 9.3 69 756-824 236-307 (326)
142 1oqy_A HHR23A, UV excision rep 52.7 4 0.00014 44.5 1.1 95 219-325 172-267 (368)
143 2fqm_A Phosphoprotein, P prote 48.0 24 0.00081 28.2 4.5 32 746-777 16-48 (75)
144 2a3n_A Putative glucosamine-fr 45.0 77 0.0026 33.8 9.9 51 148-198 101-159 (355)
145 4dci_A Uncharacterized protein 43.2 2E+02 0.007 26.8 11.0 75 756-832 21-95 (150)
146 1l6x_B Minimized B-domain of p 42.2 15 0.0005 25.2 2.1 20 752-771 13-32 (34)
147 2zj3_A Glucosamine--fructose-6 42.0 19 0.00065 39.1 4.5 37 148-184 106-146 (375)
148 3eua_A Putative fructose-amino 41.2 65 0.0022 34.1 8.5 99 149-254 74-182 (329)
149 2kl8_A OR15; structural genomi 40.9 23 0.00078 27.9 3.4 36 741-776 33-68 (85)
150 1j5x_A Glucosamine-6-phosphate 40.4 42 0.0014 35.8 6.8 47 150-196 101-155 (342)
151 1pjq_A CYSG, siroheme synthase 38.1 1.3E+02 0.0045 33.3 10.7 24 55-78 11-34 (457)
152 4hhu_A OR280; engineered prote 38.1 68 0.0023 28.4 6.4 62 717-778 3-71 (170)
153 3k9o_A Ubiquitin-conjugating e 36.9 21 0.00072 35.2 3.4 27 226-252 173-199 (201)
154 3cvj_A Putative phosphoheptose 36.6 91 0.0031 31.1 8.4 30 40-69 26-55 (243)
155 1wgl_A TOLL-interacting protei 36.0 15 0.00053 28.8 1.8 26 228-253 23-48 (59)
156 1vcs_A Vesicle transport throu 34.7 45 0.0015 29.1 4.8 32 755-786 29-60 (102)
157 3gv0_A Transcriptional regulat 34.3 49 0.0017 33.6 6.0 60 148-211 65-124 (288)
158 3ewi_A N-acylneuraminate cytid 34.0 42 0.0014 31.9 4.9 58 569-638 11-69 (168)
159 4hwg_A UDP-N-acetylglucosamine 33.7 1.6E+02 0.0056 31.6 10.4 33 149-182 94-126 (385)
160 2pfz_A Putative exported prote 32.7 2E+02 0.0069 29.6 10.5 68 756-823 219-287 (301)
161 2aml_A SIS domain protein; 469 32.5 83 0.0028 33.9 7.7 37 148-184 96-137 (373)
162 3u65_B TP33 protein; tetratric 32.2 1.3E+02 0.0044 31.7 9.0 68 756-823 239-307 (328)
163 2xhz_A KDSD, YRBH, arabinose 5 31.6 71 0.0024 30.1 6.3 38 148-185 95-136 (183)
164 3fkj_A Putative phosphosugar i 31.5 1E+02 0.0034 32.9 8.0 100 148-254 88-200 (347)
165 3g68_A Putative phosphosugar i 31.4 1.3E+02 0.0043 32.2 8.8 47 149-195 82-134 (352)
166 2nrr_A Uvrabc system protein C 30.7 25 0.00087 33.3 2.6 33 148-180 78-113 (159)
167 3jy6_A Transcriptional regulat 30.6 76 0.0026 31.8 6.7 59 148-211 62-120 (276)
168 4a1f_A DNAB helicase, replicat 30.5 1.4E+02 0.0047 31.9 8.8 55 35-95 57-112 (338)
169 3h5t_A Transcriptional regulat 30.1 3E+02 0.01 28.6 11.7 60 148-211 127-186 (366)
170 1k1e_A Deoxy-D-mannose-octulos 28.8 42 0.0014 31.7 4.0 59 570-638 11-70 (180)
171 2p9j_A Hypothetical protein AQ 28.8 45 0.0015 30.6 4.2 59 570-638 12-71 (162)
172 2p4v_A Transcription elongatio 28.1 1.5E+02 0.0052 27.8 7.7 67 757-830 6-72 (158)
173 3dfz_A SIRC, precorrin-2 dehyd 27.5 59 0.002 32.5 4.9 41 150-195 92-134 (223)
174 3l49_A ABC sugar (ribose) tran 27.2 1.1E+02 0.0037 30.8 7.1 62 149-210 191-264 (291)
175 3g1w_A Sugar ABC transporter; 27.1 2.9E+02 0.01 27.6 10.6 59 149-211 61-122 (305)
176 1gmj_A ATPase inhibitor; coile 27.1 2.8E+02 0.0095 23.2 8.9 35 773-814 35-69 (84)
177 3qk7_A Transcriptional regulat 26.1 76 0.0026 32.2 5.7 60 148-211 64-123 (294)
178 3gbv_A Putative LACI-family tr 26.0 77 0.0026 32.0 5.7 61 148-212 68-131 (304)
179 4e81_A Chaperone protein DNAK; 26.0 3.1E+02 0.011 27.0 10.0 60 756-817 118-186 (219)
180 2nrt_A Uvrabc system protein C 25.8 47 0.0016 33.2 3.8 57 148-205 83-145 (220)
181 1moq_A Glucosamine 6-phosphate 25.6 89 0.003 33.5 6.3 37 148-184 98-139 (368)
182 3kbq_A Protein TA0487; structu 25.3 1.6E+02 0.0056 28.0 7.4 70 493-569 23-94 (172)
183 3k6g_A Telomeric repeat-bindin 24.9 59 0.002 28.2 3.6 36 218-253 16-51 (111)
184 3lft_A Uncharacterized protein 24.5 1.2E+02 0.004 30.9 6.8 58 149-209 186-251 (295)
185 2dhy_A CUE domain-containing p 23.9 46 0.0016 26.8 2.6 34 220-253 23-57 (67)
186 2poc_A D-fructose-6- PH, isome 23.0 40 0.0014 36.4 2.9 36 149-184 97-136 (367)
187 3bbl_A Regulatory protein of L 22.9 95 0.0033 31.3 5.7 60 148-211 63-122 (287)
188 3huu_A Transcription regulator 22.5 87 0.003 31.9 5.3 60 148-211 82-141 (305)
189 2pfy_A Putative exported prote 22.2 2.5E+02 0.0087 28.7 9.0 68 756-823 220-288 (301)
190 3o74_A Fructose transport syst 21.9 1E+02 0.0034 30.6 5.5 60 148-211 57-117 (272)
191 1zda_A Mini protein A domain, 21.6 22 0.00076 25.0 0.3 19 752-770 18-36 (38)
192 3d8u_A PURR transcriptional re 21.5 91 0.0031 31.0 5.1 60 148-211 58-117 (275)
193 3uug_A Multiple sugar-binding 21.4 3.3E+02 0.011 27.6 9.7 60 149-211 59-121 (330)
194 1j1e_C Troponin I, TNI; THIN f 21.4 5.5E+02 0.019 24.6 10.2 37 756-792 10-50 (180)
195 3c65_A Uvrabc system protein C 21.4 73 0.0025 32.0 4.2 46 129-180 68-117 (226)
196 2xci_A KDO-transferase, 3-deox 20.9 3E+02 0.01 29.1 9.5 44 39-83 209-252 (374)
197 3egc_A Putative ribose operon 20.8 80 0.0027 31.8 4.6 60 148-211 63-122 (291)
198 2hzl_A Trap-T family sorbitol/ 20.8 3.9E+02 0.013 28.2 10.3 64 756-822 256-323 (365)
199 2fep_A Catabolite control prot 20.6 1E+02 0.0035 31.1 5.4 60 148-211 71-130 (289)
200 3ihp_A Ubiquitin carboxyl-term 20.4 52 0.0018 39.8 3.4 29 226-254 730-758 (854)
201 3qk7_A Transcriptional regulat 20.2 3.1E+02 0.011 27.4 9.1 63 148-210 186-259 (294)
202 2qh8_A Uncharacterized protein 20.0 1.3E+02 0.0044 30.7 6.0 91 149-244 193-290 (302)
203 2qyw_A Vesicle transport throu 20.0 2.2E+02 0.0074 24.6 6.5 33 755-787 39-72 (102)
No 1
>3bbn_B Ribosomal protein S2; small ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea} SCOP: i.1.1.1
Probab=100.00 E-value=6.3e-69 Score=549.38 Aligned_cols=218 Identities=38% Similarity=0.652 Sum_probs=215.6
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||+||+||||++++|||+|+|||||+|||+|||||++|+.+|++||++|.++++++|+||||||+++++++|+++|++||
T Consensus 9 lL~agvH~Gh~t~~wnpkM~~yIy~~RngihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~g 88 (231)
T 3bbn_B 9 MMEAGVHFGHGTRKWNPRMSPYISAKCKGIHIINLTRTARFLSEACDLVFDASSRGKQFLIVGTKNKAADSVARAAIRAR 88 (231)
T ss_dssp HHHTSSSSCCCSSCCCGGGGGGEEEEETTEEEECHHHHHHHTHHHHHHSHHHHTTTCCEEEECCCTTTHHHHHHHHHHHT
T ss_pred HHHhCeEecCCcCcCCcccccceecccCCcEEeeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHHHHHHHHhC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||.|+++++++|++++.+...+.|+.++|||.+.+.|+++||+++|+|+++|+++||+|||+||..
T Consensus 89 ~~yv~~rWlgG~LTN~~ti~~~i~~~~~l~~~~~~g~~~~l~Kke~~~~~r~~~kl~k~lgGik~m~~~Pdll~v~Dp~~ 168 (231)
T 3bbn_B 89 CHYVNKKWLGGMLTNWSTTETRLHKFRDLRMEQTAGRLARLPKRDAAVVKRQLSHLQTYLGGIKYMTGLPDIVIIVDQQE 168 (231)
T ss_dssp CEECCSSCCSCSSSCHHHHHHHHHHHHHHHHSTTSTTTTTSCHHHHHHHHHHHHHHTTSTTSTTSCCSCCSEEEESCTTT
T ss_pred CccccccccCCCCcCHHHHHHHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHhhhcccccccCCCEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
|++||+||.++||||||+|||||||++|||||||||||.+|+.|++++|++||++|+.
T Consensus 169 e~~ai~EA~~l~IPvIaivDTn~dp~~Vdy~IP~Ndds~~si~li~~~la~ai~~g~~ 226 (231)
T 3bbn_B 169 EYTALRECITLGIPTICLIDTNCNPDLADISIPANDDAIASIRLILTKLVFAICEGRS 226 (231)
T ss_dssp THHHHHHHHTTTCCEEECCCSSSCCSSCSEECCCCSSSHHHHHHHHHHHHHHHHHTSS
T ss_pred ccHHHHHHHHhCCCEEEEecCCCCccceeEEeeCCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999975
No 2
>2vqe_B 30S ribosomal protein S2; tRNA-binding, rRNA-binding, metal-binding, zinc-finger, translation; HET: TM2 PAR; 2.5A {Thermus thermophilus} SCOP: c.23.15.1 PDB: 1gix_E* 1hnw_B* 1hnx_B* 1hnz_B* 1hr0_B 1ibk_B* 1ibl_B* 1ibm_B 1j5e_B 1jgo_E* 1jgp_E* 1jgq_E* 1ml5_E* 1n32_B* 1n33_B* 1n34_B 1n36_B 1xmo_B* 1xmq_B* 1xnq_B* ...
Probab=100.00 E-value=8.1e-69 Score=554.94 Aligned_cols=218 Identities=45% Similarity=0.813 Sum_probs=215.9
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||+||+||||++++|||+|+|||||+|||+|||||++|+.+|++||++|..++.++|+||||||+++++.+|+++|++||
T Consensus 10 LL~AgvH~Gh~t~~wnpkM~~YIyg~RngihIIdL~kT~~~L~~A~~~i~~~a~~gg~iLfVgTk~~a~~~V~~~A~~~g 89 (256)
T 2vqe_B 10 LLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTILFVGTKKQAQDIVRMEAERAG 89 (256)
T ss_dssp TTCSSTTCCCBSSSCCGGGSTTEEEEETTEEEECHHHHHHHHHHHHHHHHHHHTTTCCEEEECCSSSSTTTTTTTTTSSS
T ss_pred HHHcCeeeccCcCCCCCccccceecccCCeEEEeHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHHhC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||+|++++|++|++++.+...|.|+.|+|||.+.+.|+++||+++|+|+++|+++||+|||+||..
T Consensus 90 ~~yv~~RWlgG~LTN~~ti~~~i~~l~~le~~~~~g~f~~l~Kke~~~~~r~~~kL~k~lgGik~m~~~Pdll~V~Dp~~ 169 (256)
T 2vqe_B 90 MPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEERPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTK 169 (256)
T ss_dssp CCEECSCCCTTTTTTHHHHHHHHHHHHHHHHHTTSTTSSCSCHHHHTTHHHHHHHHHHHSTTGGGCSSCCSEEEESCTTT
T ss_pred CeeecCeeCCCcccCHHHHHHHHHHHHHHHHHhhcCccccccHHHHHHHHHHHHHHHHhhcCccccccCCCEEEEeCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~ 218 (837)
|++||+||.++||||||||||||||++|||||||||||.+|+.|++|+|++||++|+.
T Consensus 170 e~~Ai~EA~~l~IPvIaivDTn~dp~~VdypIP~NDds~~sI~Li~~~la~ai~~g~~ 227 (256)
T 2vqe_B 170 EAIAVREARKLFIPVIALADTDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQARG 227 (256)
T ss_dssp THHHHHHHHHTTCCCEECCCTTSCGGGCSEECCSCSSCHHHHHHHHHHHHHHHHTTTS
T ss_pred chHHHHHHHHcCCCEEEEecCCCCchhcceEeecCCchHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999985
No 3
>3r8n_B 30S ribosomal protein S2; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_B 3fih_B* 3j18_B* 2wwl_B 3oar_B 3oaq_B 3ofb_B 3ofa_B 3ofp_B 3ofx_B 3ofy_B 3ofo_B 3r8o_B 4a2i_B 4gd1_B 4gd2_B 3i1m_B 1vs7_B* 3e1a_B 3e1c_B ...
Probab=100.00 E-value=1.3e-69 Score=550.53 Aligned_cols=217 Identities=48% Similarity=0.874 Sum_probs=215.2
Q ss_pred CceeceeeccccCCCCCCCcCcccceeCCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcC
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAG 80 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~ 80 (837)
||+||+||||++++|||+|+|||||+|||+|||||++|+.+|++||++|..++.++|+||||||+++++++|.++|++||
T Consensus 1 lL~AgvH~Gh~~~~wnp~M~~yIy~~R~gihIIdL~kT~~~L~~A~~~i~~~~~~~~~iLfVgTk~~~~~~V~~~A~~~g 80 (218)
T 3r8n_B 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKILFVGTKRAASEAVKDAALSCD 80 (218)
T ss_dssp CCCCSSCSCCCSSCCCGGGGGGBCCCTTSSCCBCTTTSGGGTTTHHHHHHHHHHTTCCCCEECCCTTTTTTTTTHHHHSS
T ss_pred CccccccccCCCCCCCCCcccccccccCCceEEcHHHHHHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHHHHHHHHHcC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCC
Q psy13351 81 MPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGY 160 (837)
Q Consensus 81 ~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~ 160 (837)
++||++||+||+||||.|+++++++|++++.+.+++.|+.|+|||.+.+.|+++||+++|+|+++|+++||+|||+||..
T Consensus 81 ~~yv~~rWlgG~LTN~~ti~~~i~~l~~le~~~~~~~f~~l~Kke~~~~~re~~kl~k~lgGik~m~~~Pdllvv~Dp~~ 160 (218)
T 3r8n_B 81 QFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDKLTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADH 160 (218)
T ss_dssp CCEECSSCCSSSSTTTTTTHHHHHHHHHHHTTTSSSSCSSSCTTTTTTTHHHHHHHHSSSSSSSSCSSCCCSCEEEETGG
T ss_pred CeeECCccCCCCccCHHHHHHHHHHHHHHHHHHhcchhhhccHHHHHHHHHHHHHHHHhhccccccccCCCeEEecCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhccc
Q psy13351 161 HKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217 (837)
Q Consensus 161 ~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~ 217 (837)
|++||+||.++||||||+|||||||++|||||||||||.+|+.|++++|++||++|+
T Consensus 161 e~~ai~Ea~~l~IP~IalvDTn~~p~~Vdy~IP~Ndds~~si~Li~~~la~ai~~g~ 217 (218)
T 3r8n_B 161 EHIAIKEANNLGIPVFAIVDTNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGR 217 (218)
T ss_dssp GHHHHHHHHHHTCCCEEECCSSSCCSSCSEECCSCSSSHHHHHHHHHHHHHHHSCSC
T ss_pred ccHHHHHHHHhCCCEEEEEeCcCCCcccceEeecCCccHHHHHHHHHHHHHHHHhhc
Confidence 999999999999999999999999999999999999999999999999999999996
No 4
>1dd5_A Ribosome recycling factor; three-helix bundle, beta-alpha-beta sandwich; 2.55A {Thermotoga maritima} SCOP: d.67.3.1 PDB: 1t1m_C
Probab=100.00 E-value=6.2e-56 Score=436.71 Aligned_cols=184 Identities=37% Similarity=0.600 Sum_probs=181.1
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 2 ~~~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 81 (185)
T 1dd5_A 2 VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISEERTLVIKPWDKSVLSLIEKA 81 (185)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEECSTTEEEEEESSTTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCcccHHHceeeecCCCCEEEEEecCHhHHHHHHHH
Confidence 35688899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++|||||||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++||
T Consensus 82 I~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQ 161 (185)
T 1dd5_A 82 INASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIVEEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQ 161 (185)
T ss_dssp HHHSSSCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||+++++||||||+|
T Consensus 162 kltd~~i~~id~~~~~KEkEim~v 185 (185)
T 1dd5_A 162 KLTDEFIEKLDEVFEIKKEEIMEF 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 5
>4gfq_A Ribosome-recycling factor; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.65A {Bacillus anthracis}
Probab=100.00 E-value=4.1e-56 Score=442.45 Aligned_cols=186 Identities=39% Similarity=0.607 Sum_probs=183.3
Q ss_pred hhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHH
Q psy13351 652 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIK 731 (837)
Q Consensus 652 ~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ 731 (837)
..+++++++++++|++++++|+.+|+++|||||||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|+
T Consensus 24 ~m~~~il~~a~ekM~kaie~lk~el~~iRtGRA~p~lLd~I~VdyYG~~tPL~qvA~Isvpe~rtl~I~p~D~s~i~~Ie 103 (209)
T 4gfq_A 24 AMGQQVLKFSNEKMEKAVAAYSRELATVRAGRASASVLDKVQVDYYGAPTPVVQLANITVPEARLLVIQPYDKTSIGDIE 103 (209)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTCCSBSCCGGGGTTCEEESSSCEEEGGGGEEEEEEETTEEEEEESSGGGHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCHHHhCCeEEeeCCCccchhhhheeecCCCCEEEEecCcHhhHHHHH
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHH
Q psy13351 732 KAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYD 811 (837)
Q Consensus 732 kaI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~ 811 (837)
+||++||||+||++||+.||||||+||+|||++|+|.||+.+|+||++||||||++++.+|+++|++++|||+.++++++
T Consensus 104 kAI~~S~LglnP~~dG~~Iri~iP~LTeErRkelvK~ak~~~E~aKvaIRniRrda~~~lKk~~K~~~isEDe~k~~e~e 183 (209)
T 4gfq_A 104 KAILKADLGLNPSNDGTVIRIAFPALTEERRRDLVKVVKKYAEEAKVAVRNVRRDGNDDLKKLEKAGEITEDDLRGYTED 183 (209)
T ss_dssp HHHHHHTSSCCCEECSSCEEEECCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCcCCCceeeeCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 812 IQKLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 812 iq~l~~~~~~~id~~~~~kekei~~~ 837 (837)
||++||+|+++||+++++||||||+|
T Consensus 184 iQklTd~~i~~iD~~l~~KEkEim~V 209 (209)
T 4gfq_A 184 IQKETDKYIAKVDEIAKNKEKEIMEV 209 (209)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 99999999999999999999999987
No 6
>1ise_A Ribosome recycling factor; translation; 2.20A {Escherichia coli} SCOP: d.67.3.1 PDB: 1ek8_A* 1zn0_A 1zn1_A 2rdo_8
Probab=100.00 E-value=6.6e-56 Score=436.49 Aligned_cols=184 Identities=40% Similarity=0.663 Sum_probs=181.2
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 2 ~~~~~~~~~~~M~k~ie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 81 (185)
T 1ise_A 2 ISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVEDSRTLKINVFDRSMSPAVEKA 81 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEeccCHhHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++||||+||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++||
T Consensus 82 I~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQ 161 (185)
T 1ise_A 82 IMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGEAEQARVAVRNVGRDANDKVKALLKDKEISEDDDRRSQDDVQ 161 (185)
T ss_dssp HHTTCTTCCCEESSSEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||+++++||||||+|
T Consensus 162 kltd~~i~~id~~~~~KEkEim~v 185 (185)
T 1ise_A 162 KLTDAAIKKIEAALADKEAELMQF 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 7
>1is1_A Ribosome recycling factor; translation; 2.20A {Vibrio parahaemolyticus} SCOP: d.67.3.1 PDB: 3r8n_Y
Probab=100.00 E-value=9.2e-56 Score=436.15 Aligned_cols=184 Identities=43% Similarity=0.696 Sum_probs=181.4
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 2 ~~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 81 (185)
T 1is1_A 2 INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAEDARTLAITVFDKELTQKVEKA 81 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCSSCCGGGGTTCEEEETTEEEEGGGTEEEEEEETTEEEEEESSTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEEecCHhHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++|||||||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++||
T Consensus 82 I~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQ 161 (185)
T 1is1_A 82 IMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEAEGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQ 161 (185)
T ss_dssp HHHTTSSCCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||+++++||||||+|
T Consensus 162 kltd~~i~~id~~~~~KEkEim~v 185 (185)
T 1is1_A 162 KLTDVAVKKIDEVLAAKEKELMEV 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 8
>1wqg_A Ribosome recycling factor; translation factor, triple-helix bundle, protein synthesis, translation; 2.15A {Mycobacterium tuberculosis} SCOP: d.67.3.1 PDB: 1wqf_A 1wqh_A
Probab=100.00 E-value=9.2e-56 Score=436.15 Aligned_cols=184 Identities=35% Similarity=0.583 Sum_probs=181.2
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 2 ~~~~~~~~~~~M~kai~~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 81 (185)
T 1wqg_A 2 IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPEARLVVIKPYEANQLRAIETA 81 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCGGGGTTCEEEETTEEEEGGGSEEEEEEETTEEEEEESSGGGHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCcccHHHceeeecCCCCEEEEEeCCHhHHHHHHHH
Confidence 35688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++||||+||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++||
T Consensus 82 I~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~iQ 161 (185)
T 1wqg_A 82 IRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKGEEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLD 161 (185)
T ss_dssp HHHSTTCCCCEECSSCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHH
T ss_pred HHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||+++++||||||+|
T Consensus 162 kltd~~i~~id~~~~~KEkEim~v 185 (185)
T 1wqg_A 162 KTTHQYVTQIDELVKHKEGELLEV 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 9
>1eh1_A Ribosome recycling factor; translation, hinge variability; 2.60A {Thermus thermophilus} SCOP: d.67.3.1 PDB: 2qbe_6 2qbg_6 2qbi_6* 2qbk_6* 2v46_Y* 2v48_Y* 2z4l_6* 2z4n_6* 3j0d_J 3j0e_G
Probab=100.00 E-value=7.9e-56 Score=435.94 Aligned_cols=184 Identities=39% Similarity=0.649 Sum_probs=181.2
Q ss_pred hhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHH
Q psy13351 653 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKK 732 (837)
Q Consensus 653 v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~k 732 (837)
.+++++.+++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++
T Consensus 2 ~~~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~~pL~qvA~Isv~~~r~l~I~p~D~~~i~~Iek 81 (185)
T 1eh1_A 2 TLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTAPDPRTLVVQSWDQNALKAIEK 81 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHTSCCSSCCSGGGTSCEEEETTEEEEGGGTCEEECSSTTEEEEECSSHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEeCCCCccHHHceeeecCCCCEEEEecCCHhHHHHHHH
Confidence 45778999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHH
Q psy13351 733 AINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDI 812 (837)
Q Consensus 733 aI~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~i 812 (837)
||++|||||||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++|++++|||+.++++++|
T Consensus 82 AI~~SdLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~K~~~iseD~~k~~e~~i 161 (185)
T 1eh1_A 82 AIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQYAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEI 161 (185)
T ss_dssp HHSSSTTCCCEEEETTEEEEECCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhc
Q psy13351 813 QKLTDKFILEINQLLINKEKEILT 836 (837)
Q Consensus 813 q~l~~~~~~~id~~~~~kekei~~ 836 (837)
|++||+|+++||+++++||||||+
T Consensus 162 Qkltd~~i~~id~~~~~KEkEim~ 185 (185)
T 1eh1_A 162 QKITDEFIAKADQLAEKKEQEILG 185 (185)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999996
No 10
>1ge9_A Ribosome recycling factor; three-helix bundle; NMR {Aquifex aeolicus} SCOP: d.67.3.1
Probab=100.00 E-value=5.6e-54 Score=422.46 Aligned_cols=180 Identities=39% Similarity=0.653 Sum_probs=176.7
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++++++++++|++++++|+++|+++||||+||++||+|+|+|||+++||+|||+|++|++|||+|+|||++++++|++|
T Consensus 5 ~~~~~~~~~~~M~kaie~lk~~l~~iRtGRa~p~lld~I~V~yyG~~tpL~qvA~Isv~~~r~l~I~p~D~~~i~~IekA 84 (184)
T 1ge9_A 5 LEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTISVPEHNQIVIQVWDQNAVPAIEKA 84 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCCTTTCSCCCEESSSCEECTTTTCEEECSSSSEEEEECSSSSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHhCCeEEEECCCCccHHHceeeecCCCCEEEEEecCHHHHHHHHHH
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|++ |||+||++||+.|||+||+||+|||++|+|.||+.+|++|++|||+||++++++|+++ + +|||+.++++++||
T Consensus 85 I~~-dLglnP~~dG~~Iri~iP~lTeErRkelvK~~k~~~E~aKvaiRniRrda~~~lKk~~--k-iseD~~k~~e~~iQ 160 (184)
T 1ge9_A 85 IRE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLHKITEEARVRVRNVRREAKEMIEELE--G-ISEDEKKRALERLQ 160 (184)
T ss_dssp HHH-HHCSCCEEETTEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHST--T-CCHHHHHHHHHHHH
T ss_pred HHh-CCCCCcccCCCEEEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--C-CChhHHHHHHHHHH
Confidence 999 9999999999999999999999999999999999999999999999999999999986 5 99999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|++++|+++++||||||+|
T Consensus 161 kltd~~i~~id~~~~~KEkEim~v 184 (184)
T 1ge9_A 161 KLTDKYIDEINKLMEAKEKEIMSV 184 (184)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcC
Confidence 999999999999999999999986
No 11
>3bch_A 40S ribosomal protein SA; laminin receptor, P40 ribosomal protein, acetylation, cytoplasm, phosphorylation, polymorphism; 2.15A {Homo sapiens}
Probab=100.00 E-value=5.2e-54 Score=439.96 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=162.3
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ +|||+|+|||||+| ||+|||||++|+.+|++|+++|. .+.++|+|||||||++++.+|+++|++|
T Consensus 51 LL~AgvH~Gh~--~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~-~~~~~~~iLfVgTk~~aq~~V~~~A~~~ 127 (253)
T 3bch_A 51 FLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIV-AIENPADVSVISSRNTGQRAVLKFAAAT 127 (253)
T ss_dssp HHHHTTTBCCS--CCCGGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHH-TCSSGGGEEEEECSHHHHHHHHHHHHHH
T ss_pred HHHcCEEecCC--cCCccccccEEeecCCCcEEEeHHHHHHHHHHHHHHHH-HHhCCCeEEEEeCCHHHHHHHHHHHHHh
Confidence 68999999995 89999999999999 99999999999999999999999 6789999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+||+||||.+. .| ++||+|||+||.
T Consensus 128 g~~yv~~RWlgG~LTN~~~~-----------------~f-----------------------------~~PdlliV~Dp~ 161 (253)
T 3bch_A 128 GATPIAGRFTPGTFTNQIQA-----------------AF-----------------------------REPRLLVVTDPR 161 (253)
T ss_dssp CCEEEESCCCTTTTTCCSCS-----------------TT-----------------------------CSCSEEEESCTT
T ss_pred CCeeecceecCCcccCcccc-----------------cc-----------------------------CCCCEEEEECCC
Confidence 99999999999999999852 11 589999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||.++||||||||||||||++|||||||||||.+||.|++|+|++||++|+..
T Consensus 162 ~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~Ndds~~SI~Li~~lla~aIl~grg~ 221 (253)
T 3bch_A 162 ADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGT 221 (253)
T ss_dssp TTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred ccchHHHHHHHhCCCEEEEEcCCCCcccCceEeecCCcchhhHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999863
No 12
>1vi6_A 30S ribosomal protein S2P; structural genomics, ribosome; 1.95A {Archaeoglobus fulgidus} SCOP: c.23.15.1 PDB: 1vi5_A
Probab=100.00 E-value=6.3e-54 Score=430.01 Aligned_cols=169 Identities=25% Similarity=0.414 Sum_probs=160.9
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+++ ||+|+|||||+| ||+|||||++|+.+|++|+++|..+ ++|+|||||||++++++|+++|++|
T Consensus 16 lL~AgvH~Gh~~~--npkM~~YIy~~R~~gihIIdL~kT~~~L~~A~~~i~~i--~~~~iLfVgTk~~~~~~V~~~A~~~ 91 (208)
T 1vi6_A 16 YLAAGVHIGTQIK--TGDMKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSRY--EPSKILLVAARQYAHKPVQMFSKVV 91 (208)
T ss_dssp HHHHTTTBCCSCC--CTTTGGGEEEECTTSCEEECHHHHHHHHHHHHHHHTTS--CGGGEEEEECSGGGHHHHHHHHHHH
T ss_pred HHhcCeEEcCCcC--CCCccceEEeeeCCCcEEEcHHHHHHHHHHHHHHHHhc--CCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 6899999999965 999999999999 9999999999999999999999999 8999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++|+++||+||+||||+. ..| ++||++||+||.
T Consensus 92 g~~~v~~rwlgG~LTN~~~-----------------~~f-----------------------------~~PdlliV~Dp~ 125 (208)
T 1vi6_A 92 GSDYIVGRFIPGTLTNPML-----------------SEY-----------------------------REPEVVFVNDPA 125 (208)
T ss_dssp CCEEEESSCCTTTTTCTTS-----------------TTC-----------------------------CCCSEEEESCTT
T ss_pred CCeeecCEECCCcccChhh-----------------Hhh-----------------------------CCCCEEEEECCC
Confidence 9999999999999999972 001 489999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||.++||||||+|||||||++|||||||||||.+|+.|++|+|++||++|+..
T Consensus 126 ~e~~ai~EA~~l~IPvIalvDTn~~p~~Vd~~IP~Ndds~~SI~Li~~~la~ail~grg~ 185 (208)
T 1vi6_A 126 IDKQAVSEATAVGIPVVALCDSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIRGQ 185 (208)
T ss_dssp TTHHHHHHHHHTTCCEEEEECTTCCCTTCSEEEESCCSCHHHHHHHHHHHHHHHHHHHTC
T ss_pred cchhHHHHHHHhCCCEEEEeCCCCCccccCEEEeCCCCchhHHHHHHHHHHHHHHHHhCC
Confidence 999999999999999999999999999999999999999999999999999999999853
No 13
>2xzm_B RPS0E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_B
Probab=100.00 E-value=3.9e-53 Score=433.48 Aligned_cols=170 Identities=25% Similarity=0.278 Sum_probs=162.0
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ +|||+|+|||||+| ||+|||||++|+.+|++|+++|.. +.++|+|||||||++++.+|+++|++|
T Consensus 13 lL~AgvH~G~~--~wnpkM~~YIy~~R~nGihIIdL~kT~~~L~~A~~~i~~-i~~~~~iLfVgtk~~~~~~V~~~A~~~ 89 (241)
T 2xzm_B 13 LLASNCHQATI--NLNNQMKRYISHKGVNGIHYINIEETWQKIKLAARVIAA-VQHPEDVMVVCSRIYGQRAAIKFAGYT 89 (241)
T ss_dssp HHHTTTTEECS--CCCGGGTTTEEEECSSSCEEECHHHHHHHHHHHHHHHHH-CSSGGGEEEECCSHHHHHHHHHHHHHH
T ss_pred HHhcCeEeccC--cCCCCCcccEeeeeCCCcEEEeHHHHHHHHHHHHHHHHH-HhCCCeEEEEECCHHHHHHHHHHHHHh
Confidence 68999999984 89999999999999 999999999999999999999999 588999999999999999999999999
Q ss_pred CCCcc-cCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecC
Q psy13351 80 GMPFI-DQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDV 158 (837)
Q Consensus 80 ~~~~v-~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~ 158 (837)
|++|+ ++||+||+||||++ +.| ++||+|||+||
T Consensus 90 g~~yv~~~RWlgG~LTN~~t-----------------~~~-----------------------------~~PdlliV~Dp 123 (241)
T 2xzm_B 90 HCKSTSSSRWTPGTLTNYQT-----------------LKY-----------------------------EEPRVLIVTDP 123 (241)
T ss_dssp TCBCCCCSSCCTTTTTCTTC-----------------TTC-----------------------------CCCSEEEESCT
T ss_pred CCEEeccccccCCcccCccc-----------------ccc-----------------------------CCCCEEEEECC
Confidence 99999 99999999999985 111 58999999999
Q ss_pred CCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 159 GYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 159 ~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
..|++||+||.++||||||||||||||++|||||||||||.+|+.|++++|++||++|+..
T Consensus 124 ~~e~~ai~EA~~l~IPvIalvDTn~~p~~VDy~IP~Ndds~~SI~Li~~~la~ail~~rg~ 184 (241)
T 2xzm_B 124 RSDFQAIKEASYVNIPVIALCDSDSPLAYVDVVIPCNNRSTESISMIYWMIAREVKILRGE 184 (241)
T ss_dssp TTTHHHHHHHTTTTCCEEECCCSSSCCTTCCEECCSCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred CcchHHHHHHHHhCCCEEEEecCCCCcccccEEEeCCCcccchHHHHHHHHHHHHHHhhCc
Confidence 9999999999999999999999999999999999999999999999999999999999863
No 14
>3j20_B 30S ribosomal protein S2P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=7e-53 Score=421.22 Aligned_cols=169 Identities=24% Similarity=0.370 Sum_probs=160.5
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||++ |||+|+|||||+| ||+|||||++|+.+|++|+++|..+ ++|+|||||||++++.+|.++|+++
T Consensus 12 lL~AgvH~Gh~~--~np~M~~YIy~~r~~Gi~IIdL~kT~~~L~~A~~~i~~~--~~~~ilfV~tk~~~~~~V~k~A~~~ 87 (202)
T 3j20_B 12 YLAAGVHIGTQQ--KTKDMKKFIYRVRQDGLYVLDVRKTDERLKVAGKFLAKF--EPQSILAVSVRLYGQKPVKKFGEVT 87 (202)
T ss_dssp HHHHTCSBCCSC--CCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHHHS--CSSCEEEECCCTTTHHHHHHHHHHH
T ss_pred HHhcCccccCCc--CCCCccccEeeeeCCCCEEECHHHHHHHHHHHHHHHHhh--CCCeEEEEecChHHHHHHHHHHHHH
Confidence 589999999995 6999999999999 8999999999999999999999987 7899999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++|+++||+||+||||.. ..| ++||++||+||.
T Consensus 88 g~~~v~~rw~gG~lTN~~~-----------------~~~-----------------------------~~Pdllvv~Dp~ 121 (202)
T 3j20_B 88 GARAIPGRFLPGTMTNPAV-----------------KNF-----------------------------FEPDVLIVTDPR 121 (202)
T ss_dssp SCCCCCSSCCSSSSSCSSS-----------------SSC-----------------------------CCCSEEEESCTT
T ss_pred CCceeCceecCCCcccHhH-----------------Hhc-----------------------------cCCCeEEEeCCc
Confidence 9999999999999999962 001 499999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++|++||+++||||||+|||||||++|||||||||||.+|+.|++|+|+++|++|+..
T Consensus 122 ~d~~ai~EA~~l~IP~Ial~DTn~~p~~Vd~~IP~Ndds~~Si~Li~~~la~avl~~rg~ 181 (202)
T 3j20_B 122 ADHQAMREAVEIGIPIVALVDTENLLSYVDLAIPTNNKGRKALALIYWILAREILYNRGE 181 (202)
T ss_dssp TSHHHHHHHHHHTCCEEEEECTTCCCTTCCEEEECCCSSHHHHHHHHHHHHHHHHHHHTS
T ss_pred cchHHHHHHHHcCCCEEEEEcCCCCccccCEEEeCCCCcHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 15
>3u5c_A 40S ribosomal protein S0-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_A 3o30_A 3o2z_A 3u5g_A 3jyv_B* 1s1h_B
Probab=100.00 E-value=7.1e-53 Score=431.35 Aligned_cols=170 Identities=24% Similarity=0.347 Sum_probs=162.2
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||+||+||||+ +|||+|+|||||+| ||+|||||.+|+.+|++|+++|..+ .++++|||||||++++.+|.++|+++
T Consensus 17 lL~AGvH~G~~--~wnpkM~~YIy~~R~nGIhIIdL~kT~~~L~~A~~~i~~i-~~~~~vlfVgTk~~~q~~V~k~A~~~ 93 (252)
T 3u5c_A 17 LLAANTHLGAR--NVQVHQEPYVFNARPDGVHVINVGKTWEKLVLAARIIAAI-PNPEDVVAISSRTFGQRAVLKFAAHT 93 (252)
T ss_dssp HHHHTTTEECS--SCCCTTCCCEEEEETTTEEEECHHHHHHHHHHHHHHHTTS-SSGGGEEEEECSHHHHHHHHHHHHHS
T ss_pred HHHCCeeccCC--cCCcCchhheecccCCCcEEecHHHHHHHHHHHHHHHHHH-hcCCEEEEEeCCcHHHHHHHHHHHHh
Confidence 68999999976 89999999999999 8999999999999999999999987 68999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+||+||||++. .| ++||+|||+||.
T Consensus 94 g~~~v~~rwlgGtLTN~~t~-----------------~f-----------------------------~~PdllvV~Dp~ 127 (252)
T 3u5c_A 94 GATPIAGRFTPGSFTNYITR-----------------SF-----------------------------KEPRLVIVTDPR 127 (252)
T ss_dssp SCEEEESCCCTTSSSCTTST-----------------TC-----------------------------CCCSEEEESCTT
T ss_pred CCceecCcccCCcccChhhh-----------------hc-----------------------------cCCceEEEeCCc
Confidence 99999999999999999851 11 599999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||+++||||||||||||||++|||||||||||.+|+.|++|+|+++|+++++.
T Consensus 128 ~d~~ai~EA~~l~IP~Ial~DTn~~p~~VD~~IP~Ndds~~SI~Li~~~La~aVl~~rg~ 187 (252)
T 3u5c_A 128 SDAQAIKEASYVNIPVIALTDLDSPSEFVDVAIPCNNRGKHSIGLIWYLLAREVLRLRGA 187 (252)
T ss_dssp TTHHHHHHHHTTTCCEEEEECTTCCCTTCSSEEECCTTSTTHHHHHHHHHHHHHHSSSSS
T ss_pred cchHHHHHHHHcCCCEEEEEcCCCCcccCCEEEeCCCCCcchHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999864
No 16
>2zkq_b 40S ribosomal protein SA; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=100.00 E-value=7.9e-53 Score=440.25 Aligned_cols=170 Identities=23% Similarity=0.309 Sum_probs=161.4
Q ss_pred CceeceeeccccCCCCCCCcCccccee-CCeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r-~g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||++|+||||+ +|||+|+|||||+| ||+|||||.+|+.+|++|+++|. .+.++++|||||||++++.+|+++|++|
T Consensus 18 LL~AgvH~Gh~--~wnpkM~~YIyg~R~nGIhIIdL~kT~~~L~~A~~~i~-~i~~~~~ILfVgTk~~aq~~V~k~A~~~ 94 (295)
T 2zkq_b 18 FLAAGTHLGGT--NLDFQMEQYIYKRKSDGIYIINLKRTWEKLLLAARAIV-AIENPADVSVISSRNTGQRAVLKFAAAT 94 (295)
T ss_dssp HHHHTTTBCCS--CCCTGGGGGEEEECTTSCEEECHHHHHHHHHHHHHHHH-HSSCGGGEEEEECSHHHHHHHHHHHHHH
T ss_pred HHhcCEEecCC--cCCccccceEEeecCCCCEEEeHHHHHHHHHHHHHHHH-HHhCCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 68999999995 89999999999999 99999999999999999999999 6689999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+||+||||++. .| ++||+|||+||.
T Consensus 95 g~~yv~~RWlgG~LTN~~t~-----------------~f-----------------------------~~PdlliV~Dp~ 128 (295)
T 2zkq_b 95 GATPIAGRFTPGTFTNQIQA-----------------AF-----------------------------REPRLLVVTDPR 128 (295)
T ss_dssp CCEEEESSCCCC-CCCTTCS-----------------SC-----------------------------CCCSEEEESCTT
T ss_pred CCceecceEecccccCcccc-----------------cc-----------------------------cCCCeEEEeCCC
Confidence 99999999999999999852 11 589999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||+++||||||||||||||++|||||||||||.+||.|++++|+++|++|+..
T Consensus 129 ~e~~AI~EA~~lgIPvIalvDTn~dp~~VDy~IP~Ndds~~SI~Li~~lla~aIl~~rg~ 188 (295)
T 2zkq_b 129 ADHQPLTEASYVNLPTIALCNTDSPLRYVDIAIPCNNKGAHSVGLMWWMLAREVLRMRGT 188 (295)
T ss_dssp TTHHHHHHHHHHTCCEEEEECTTCCCTTCSEEEESCSSCHHHHHHHHHHHHHHHHHCCSS
T ss_pred cchhHHHHHHHhCCCEEEEecCCCCcccCCEEEeCCCCccchHHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999999999999999999999999999863
No 17
>3iz6_A 40S ribosomal protein SA (S2P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=100.00 E-value=8.2e-52 Score=428.50 Aligned_cols=170 Identities=25% Similarity=0.297 Sum_probs=162.3
Q ss_pred CceeceeeccccCCCCCCCcCcccceeC-CeeEeeHHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHc
Q psy13351 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRN-KIHIINLEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRA 79 (837)
Q Consensus 1 ll~a~~h~G~~~~~wnp~m~~~i~g~r~-g~~Iinl~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~ 79 (837)
||++|+||||+ +|||+|++||||+|+ |+|||||++|+.+|++|+++|..+ .++++|||||||++++.+|.++|++|
T Consensus 22 LLaAGvH~Gt~--~wNpkM~pYIyg~RndGIhIIdL~kT~e~L~~Aa~~I~~i-~~~~~ILfVgTk~~aq~aV~k~A~~t 98 (305)
T 3iz6_A 22 MLAADVHLGTK--NCDFQMERYVYKRRTDGIYIINLGKTWEKLQLAARVIVAI-ENPQDIIVQSARPYGQRAVLKFAQYT 98 (305)
T ss_dssp HHHHHHSSCBS--CCCTTTTTSCCEEETTTEEECCHHHHHHHHHHHHHHHHHT-TSSCCEEEECCSHHHHHHHHHHHHHH
T ss_pred HHHcCeeccCC--cCCcCccccEEeeecCCceEECHHHHHHHHHHHHHHHHHH-hCCCeEEEEeCcHHHHHHHHHHHHHh
Confidence 68999999976 899999999999996 999999999999999999999997 78999999999999999999999999
Q ss_pred CCCcccCcccCCCCCChHHHHHHHHHHHHHHHHhccCccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCC
Q psy13351 80 GMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVG 159 (837)
Q Consensus 80 ~~~~v~~rw~~G~LTN~~~i~~~i~~~~~~~~~~~~~~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~ 159 (837)
|++||++||+|||||||++. .| ++||+|||+||+
T Consensus 99 G~~yV~~RWlgGtLTN~~t~-----------------~f-----------------------------~ePdllvV~Dp~ 132 (305)
T 3iz6_A 99 GAHAIAGRHTPGTFTNQLQT-----------------SF-----------------------------SEPRLLILTDPR 132 (305)
T ss_dssp TCEEECSCCCTTTTTTTTTS-----------------CS-----------------------------SCCSEEEESCTT
T ss_pred CCccccCcccCCcccCcccc-----------------cc-----------------------------cCCceeEEeCcc
Confidence 99999999999999999862 11 599999999999
Q ss_pred CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchhhhhcccch
Q psy13351 160 YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTV 219 (837)
Q Consensus 160 ~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v 219 (837)
.|++||+||+++||||||||||||||++|||||||||||.+||.|++++|+++|++++..
T Consensus 133 ~d~qAI~EA~~lnIPtIALvDTnsdp~~VDy~IP~NDds~rSI~Li~~lLA~aVl~~rgt 192 (305)
T 3iz6_A 133 TDHQPIKESALGNIPTIAFCDTDSPMRYVDIGIPANNKGKQSIGCLFWLLARMVLQMRGT 192 (305)
T ss_dssp TTHHHHHHHHHHTCCEEEEECTTSCGGGCSEEEESCCSSTHHHHHHHHHHHHHHHHTTSS
T ss_pred cchHHHHHHHHcCCCEEEEEcCCCCccccceEEeCCCCCccHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999999999999863
No 18
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=100.00 E-value=1.1e-50 Score=428.14 Aligned_cols=190 Identities=27% Similarity=0.387 Sum_probs=177.0
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH----HhhhhhhhhcccccCCCeeEEEEeCCEEEEEEEecCC
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI----KLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCET 290 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~----~g~~~a~kk~~r~~~eG~i~~y~~~~~g~iveln~et 290 (837)
...+||+||++||+|||||||||.|+|||+|+|++|||+ +|+++|+||++|.|+||+|++|++++.||||||||||
T Consensus 4 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LR~~a~kkG~akAaKka~R~aaEGlV~~~~~~~~gvlvEvNcET 83 (291)
T 1xb2_B 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAARLHGRKTKEGLIGLLQEGDTTVLVEVNCET 83 (291)
T ss_dssp HHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHTTSCCCEEEEEEEEETTEEEEEEEEESC
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccHHHHHHhccccccceEEEEEEcCCEEEEEEEeccc
Confidence 356799999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred chhccchHHHHHHHHHHHHHHhcCCC-------------ChhhhhcccccCCCcc--HHHHHHHHHHhhCCceEEEEEEE
Q psy13351 291 DFVAKNNEFIKFSKKIAKLITENTPI-------------NLDQLNNLKIKNNLLT--VDEKCKELISRIGENIKIRRFKL 355 (837)
Q Consensus 291 dfva~n~~f~~la~~ia~~iaa~~p~-------------~~~~l~q~~i~d~~~t--v~~~~~~~~~~~ge~i~l~rf~~ 355 (837)
||||||+.|++|+++||+++++.+|. +++++.+..+.+ +.| |+|.+.++++++||||+|+||.+
T Consensus 84 DFVArN~~F~~l~~~ia~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~~~-~~t~tv~d~i~~~ia~iGEni~lrR~~~ 162 (291)
T 1xb2_B 84 DFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTYSKGFLNSSELSELPAGP-EREGSLKDQLALAIGKLGENMILKRAAW 162 (291)
T ss_dssp HHHHTSHHHHHHHHHHHHHHHHHHTTSCCCSSSCEEEEECHHHHHTSBCCS-SSCSBHHHHHHHHHHHHCSCEEEEEEEE
T ss_pred ceeeCCHHHHHHHHHHHHHHHhcCCcccccccccccccCCHHHHhhccccc-CcchhHHHHHHHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999998887 788887776643 346 99999999999999999999999
Q ss_pred EeeC--CeEEEEeeC------------CeEEEEEEecCCC-----hhHHHHHHhhhhccCccccCcCcC
Q psy13351 356 FKTN--NNLISYLHD------------NKIGVIVEYNGDN-----ESAVKDVAMHIAAMKPIALSSDQI 405 (837)
Q Consensus 356 ~~~g--~~i~~Y~H~------------~~~~~~v~~~~~~-----~~~~~~iamhi~a~~p~~l~~~~v 405 (837)
++.+ +.+++|+|+ |||||||.+++.+ ++++++||||||||+|.||++++|
T Consensus 163 ~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~~~l~~~ak~iAmHIaA~~P~~l~~~~v 231 (291)
T 1xb2_B 163 VKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDD 231 (291)
T ss_dssp EECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCGGGCHHHHHHHHHHHHHHCCSBCCCTTS
T ss_pred hcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCccchHHHHHHHHHHHHHhcCCcccCHHHh
Confidence 9854 579999995 5999999999876 789999999999999999999988
No 19
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=100.00 E-value=1.3e-48 Score=473.62 Aligned_cols=211 Identities=37% Similarity=0.558 Sum_probs=196.0
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEeCCEEEEEEEecCCchhc
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYISEKVGSLVEINCETDFVA 294 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~~~~g~iveln~etdfva 294 (837)
...+||+||++||++||||||||+|+|||+|+|++|||++|+++|+||++|.|+||+|++|+|++.||||||||||||||
T Consensus 5 ta~~VKeLRe~TGagmmdCKKAL~e~~GD~ekAie~LRkkG~akAaKka~R~aaEGlv~~~i~~~~g~lvEvNcETDFVA 84 (1289)
T 3avx_A 5 TASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIKAAKKAGNVAADGVIKTKIDGNYGIILEVNCQTDFVA 84 (1289)
T ss_dssp CCSCTHHHHTTTCCCTTTTTTTTTTTTTCHHHHHHHHHTTHHHHHHHHTTSCCCEEEEEEEECSSEEEEEEEEESCHHHH
T ss_pred CHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHhCcchhhHhcCccccCceEEEEEcCCEEEEEEEEcccccee
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHhcCCCChhhhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEEEEeeCCeEEEE
Q psy13351 295 KNNEFIKFSKKIAKLITENTPINLDQLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLISYLHDNKIGVI 374 (837)
Q Consensus 295 ~n~~f~~la~~ia~~iaa~~p~~~~~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~~Y~H~~~~~~~ 374 (837)
||++|++|+++||.++++.+|.+++.+.+. |+|.+.+.++++||||+|+||.+++ ++.+++|+|++|||||
T Consensus 85 kn~~F~~l~~~ia~~~~~~~~~~~e~l~~~--------v~~~~~~~ia~iGEni~lrR~~~~~-~~~v~~Y~Hg~kigvl 155 (1289)
T 3avx_A 85 KDAGFQAFADKVLDAAVAGKITDVEVLKAQ--------FEEERVALVAKIGENINIRRVAALE-GDVLGSYQHGARIGVL 155 (1289)
T ss_dssp TSHHHHHHHHHHHHHHHTTTCCCHHHHHHT--------TSTTTTTTTTTTCSCCEEEEEEEEE-CSEEEEEEETTTEEEE
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCHHHHHHH--------HHHHHHHHHhhhccceEEeEEEEEE-CCEEEEEecCCeEEEE
Confidence 999999999999999999999999988764 5677788999999999999999998 5789999998899999
Q ss_pred EEecCCChhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccCCCccccccc
Q psy13351 375 VEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSI 440 (837)
Q Consensus 375 v~~~~~~~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g~~~~i~~~~ 440 (837)
|++++.++++||+||||||||+|.||++++||++++++|++++..++.. +|+|..+.+++
T Consensus 156 V~~~~~~~~~ak~iAMhIaA~~P~~l~~~~vp~~~ve~E~~i~~~~a~~------~gKPe~i~eKi 215 (1289)
T 3avx_A 156 VAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQ------SGKPKEIAEKM 215 (1289)
T ss_dssp EEEESCCHHHHHHHHHHHHHHCCSBSSTTTSCTTHHHHHHHHHHHHHHH------HTCCHHHHHHH
T ss_pred EEecCCcHHHHHHHHHHHHhcCCeecchhhCCHHHHHHHHHHHHHHHHh------cCCcHHHHHHH
Confidence 9999988899999999999999999999999999999999998888643 36776655543
No 20
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=100.00 E-value=1.5e-45 Score=362.47 Aligned_cols=145 Identities=37% Similarity=0.549 Sum_probs=138.8
Q ss_pred ccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEe--CCEEEEEEEecCCchh
Q psy13351 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS--EKVGSLVEINCETDFV 293 (837)
Q Consensus 216 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~--~~~g~iveln~etdfv 293 (837)
..+||+||++||+||||||+||.|+|||+|+|++|||++|+++|+||++|.|+||+|++|+| ++.|||||||||||||
T Consensus 4 a~~VKeLRe~TGagmmdCKkAL~e~~GD~ekAie~LR~kG~akAaKka~R~aaEGlV~~~i~~~~~~gvlvEvNcETDFV 83 (196)
T 1aip_C 4 MELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADREAREGIIGHYIHHNQRVGVLVELNCETDFV 83 (196)
T ss_dssp HHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHTTSCCCCCEEEEEECTTSSEEEEEEEECSSHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHcCCchhhHhccccccCCeEEEEEecCCCEEEEEEEecCCccc
Confidence 45799999999999999999999999999999999999999999999999999999999997 7899999999999999
Q ss_pred ccchHHHHHHHHHHHHHHhcCCCChhh----------------------------------------------hhccccc
Q psy13351 294 AKNNEFIKFSKKIAKLITENTPINLDQ----------------------------------------------LNNLKIK 327 (837)
Q Consensus 294 a~n~~f~~la~~ia~~iaa~~p~~~~~----------------------------------------------l~q~~i~ 327 (837)
|||+.|++|+++|||||||++|.+++. ++|+|++
T Consensus 84 Arn~~F~~lakdiAMhiAA~~P~~l~~~~vp~~~ve~E~~i~~~~~~~~gKPe~i~eKiveGrl~Kf~~e~~Ll~Q~fvk 163 (196)
T 1aip_C 84 ARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVK 163 (196)
T ss_dssp HTSHHHHHHHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHBTTTSBCTT
T ss_pred cCCHHHHHHHHHHHHHHHHhCCccCChhhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhHhhhhcCCccC
Confidence 999999999999999999999987532 7899999
Q ss_pred CCCccHHHHHHHHHHhhCCceEEEEEEEEeeCC
Q psy13351 328 NNLLTVDEKCKELISRIGENIKIRRFKLFKTNN 360 (837)
Q Consensus 328 d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~ 360 (837)
|+++||+|++++.++++||||+|+||+||++|+
T Consensus 164 d~~~tV~~~l~~~~~~~G~~i~v~~F~R~~vG~ 196 (196)
T 1aip_C 164 DDKVKVKELIQQAIAKIGENIVVRRFCRFELGA 196 (196)
T ss_dssp CTTSBHHHHHHHHHHHHCSCCEEEEEEEEETTC
T ss_pred CCCCCHHHHHHHHHHhcCCCcEEEEEEEEEeCC
Confidence 999999999999999999999999999999983
No 21
>3ek6_A Uridylate kinase; UMPK unique GTP B site, allosteric regulation, ATP-binding, nucleotid binding, pyrimidine biosynthesis, transferase; 2.34A {Xanthomonas campestris PV} SCOP: c.73.1.0 PDB: 3ek5_A
Probab=100.00 E-value=3.1e-37 Score=323.81 Aligned_cols=233 Identities=49% Similarity=0.788 Sum_probs=212.5
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
++++|+|+ +|+++....++.++++.++++|++|+++++.|++++||||||+.++++.....+++....++++++++.+
T Consensus 9 ~~riViKl--GGs~l~~~~~~~~~~~~i~~la~~i~~l~~~G~~vviV~gGG~~~~~~~~~~~g~~~~~~d~~g~l~t~~ 86 (243)
T 3ek6_A 9 YRRILLKL--SGEALMGDGDYGIDPKVINRLAHEVIEAQQAGAQVALVIGGGNIFRGAGLAASGMDRVTGDHMGMLATVI 86 (243)
T ss_dssp CSEEEEEE--CGGGGTTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECSTTTSCSTTTSCSSSCHHHHHHHHHHHHHH
T ss_pred CcEEEEEE--chhhccCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 46789995 5555554456689999999999999999999999999999998876665555577777888999999999
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
|+.+++.+|+..|++++++++.+...+..+++.+.+..+|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+++||
T Consensus 87 N~~~l~~al~~~G~~a~~~~~~~~~~v~~~~~~~~~~~lL~~g~IpVv~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lTd 166 (243)
T 3ek6_A 87 NALAMQDALEKLGAKVRVMSAIKINDVCEDFIRRRAIRHLEKGRIAIFAAGTGNPFFTTDSGAALRAIEIGADLLLKATK 166 (243)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHHTCSEEEEECS
T ss_pred HHHHHHHHHHHcCCCeEEechhhcCcccCcCCHHHHHHHHHCCcEEEEECCCCCCcCChHHHHHHHHHHcCCCEEEEEeC
Confidence 99989999999999999999999887777888899999999999999999988999999999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||++||+.+|+|+++++++++|+.+.|.+++++.|+++|.++|++++|+|+++|+++.+++.|+.+||+|.+
T Consensus 167 VdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~~~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~ 241 (243)
T 3ek6_A 167 VDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRIFGMSEPGVLLRILHGAQIGTLVQG 241 (243)
T ss_dssp SSSCBSSCGGGCTTCCBCSEECHHHHHHHTCCSSCHHHHHHHHHTTCCEEEECCCSTTHHHHHHTTCCCSEEECC
T ss_pred CCccCCCCCCCCCCceecccccHHHHHhCCchhHHHHHHHHHHHCCCeEEEEcCCCccHHHHHHCCCCCceEEee
Confidence 999999999999999999999999998888889999999999999999999999999999999999999999976
No 22
>4a7w_A Uridylate kinase; transferase; HET: GTP; 1.80A {Helicobacter pylori} PDB: 4a7x_A*
Probab=100.00 E-value=3.1e-36 Score=315.81 Aligned_cols=232 Identities=45% Similarity=0.717 Sum_probs=203.7
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccC-CCcchHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQN-IDRSTADYMGMLATI 492 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 492 (837)
.+++|+|. +|+++....++.++++.+++++++|+.+++.|+++|||||||+.++++.....+ ++..+.+.++++++.
T Consensus 7 ~k~iViKi--GGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vvlV~gGG~~~~g~~~~~~G~~~~~~~~~~~~la~~ 84 (240)
T 4a7w_A 7 NKRVLVKF--SGEALAGDNQFGIDIHVLDHIAKEIKSLVENDIEVGIVIGGGNIIRGVSAAQGGIIRRTSGDYMGMLATV 84 (240)
T ss_dssp CCEEEEEE--CGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTTC---------CCCHHHHHHHHHHHHH
T ss_pred CCEEEEEE--CHHHcCCCCCCCCCHHHHHHHHHHHHHHHHCCCcEEEEECCcHHHhHhHHHhcCCCCCCCHHHHHHHHHH
Confidence 45788995 555554445678999999999999999999999999999999888877644446 777788899998888
Q ss_pred HHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEee
Q psy13351 493 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT 572 (837)
Q Consensus 493 ~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilT 572 (837)
+|+.+++.+|+.+|++++++++.++....++++.+.+..+|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+++|
T Consensus 85 ~n~~l~~~~l~~~G~~av~lt~~d~~~~~~~~~~~~i~~lL~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~li~lT 164 (240)
T 4a7w_A 85 INAVAMQEALEHIGLDTRVQSAIEIKEICESYIYRKAIRHLEKGRVVIFGAGTGNPFFTTDTAATLRAIEIGSDLIIKAT 164 (240)
T ss_dssp HHHHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCTTSCHHHHHHHHHHHTTCSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCEEEecHHHcCcccCcCcHHHHHHHHHCCCEEEEeCCCCCCCCChHHHHHHHHHHcCCCEEEEcc
Confidence 89888889999999999999999988777778899999999999999999988889999999999999999999999999
Q ss_pred ccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCC-ccceEEE
Q psy13351 573 KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGK-NEGTLVY 647 (837)
Q Consensus 573 DVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge-~~GT~I~ 647 (837)
||||||++||+.+|++++|++++++|+.+.|..++++.|+..|.++|++++|+||+.|+++.+++.|+ .+||.|.
T Consensus 165 dVdGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~g~~~~~l~~~l~g~~g~GT~i~ 240 (240)
T 4a7w_A 165 KVDGIYDKDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLPIVVCNMFKKGNLLQVIKHQQGVFSMVK 240 (240)
T ss_dssp SSSSEESSCTTTCTTCCEESEECHHHHHHSSCCSSCHHHHHHHHHTTCCEEEEESSSTTHHHHHHHHSCSSCEEEC
T ss_pred CCCceECCCCCCCCCCeEcceecHHHHHhcCccccHHHHHHHHHHCCCeEEEECCCCccHHHHHHCCCCCCceeeC
Confidence 99999999999999999999999999988888889999999999999999999999999999999987 4799983
No 23
>3nwy_A Uridylate kinase; allosterically activated form, AAK fold, UMP kinase, transfe; HET: GTP UDP; 2.54A {Mycobacterium tuberculosis}
Probab=100.00 E-value=3.9e-36 Score=319.80 Aligned_cols=231 Identities=42% Similarity=0.774 Sum_probs=202.2
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
++++|+| .|++.++++...++++.+++++++|++++++|+++|||||||+.++++.....+++..+.++++++++.+
T Consensus 50 ~krIViK---lGGs~L~~~~~~ld~~~i~~la~~I~~l~~~G~~vviV~GgG~i~~g~~~~~~gl~~~~~d~~g~lat~~ 126 (281)
T 3nwy_A 50 YSRVLLK---LGGEMFGGGQVGLDPDVVAQVARQIADVVRGGVQIAVVIGGGNFFRGAQLQQLGMERTRSDYMGMLGTVM 126 (281)
T ss_dssp CSEEEEE---ECGGGGGTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCTTC---CCTTTTTCCHHHHHHHHHHHHHH
T ss_pred CcEEEEE---EchhhccCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECChhHhhhHHHHhcCCCccchhHHHHHHHHH
Confidence 5778999 5556666655789999999999999999999999999999999988886555678888889999999999
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
|+.+++..|..+|++++.+++.+...+..++....+..+|++|.|||++|+.|.+++++|++|+++|.+|+||+|+++||
T Consensus 127 n~~~l~~~L~~~Gi~a~~~~~~~~~~~~~~~~~~~~l~lL~~g~IpVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD 206 (281)
T 3nwy_A 127 NSLALQDFLEKEGIVTRVQTAITMGQVAEPYLPLRAVRHLEKGRVVIFGAGMGLPYFSTDTTAAQRALEIGADVVLMAKA 206 (281)
T ss_dssp HHHHHHHHHHHTTCCEEEEESSCCGGGSEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCEEEEecccccccccccchHHHHHHHHcCCeEEEECCCCCCCCCHHHHHHHHHHHcCCCEEEEeec
Confidence 99999999999999999999988877766664444558999999999999888999999999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|+|++|+++++.|+.+.|++++|+.|+.+|.++|++++|+|+++|++|.+++.|+.+||+|.
T Consensus 207 VdGVy~~dP~~~p~A~~i~~is~~e~~~~g~~v~k~~Aa~~a~~~Gi~v~I~~g~~p~~l~~~l~Ge~~GT~i~ 280 (281)
T 3nwy_A 207 VDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILVFNLLTDGNIARAVRGEKIGTLVT 280 (281)
T ss_dssp SSSCBCC-----CCCCBCSEECHHHHHTTTCCSSCHHHHHHHHTTTCCEEEEETTSTTHHHHHHHTCCCSEEEC
T ss_pred cCccccCCCCcCCCCeEcccccHHHHHHcCCCcHHHHHHHHHHHCCCeEEEecCCCchHHHHHHcCCCCceEEe
Confidence 99999999999999999999999999888899999999999999999999999999999999999999999985
No 24
>1ybd_A Uridylate kinase; alpha/beta/alpha fold, hexamer, structural genomics, structure initiative, PSI; 2.60A {Neisseria meningitidis} SCOP: c.73.1.3
Probab=100.00 E-value=8.6e-34 Score=297.96 Aligned_cols=232 Identities=54% Similarity=0.869 Sum_probs=199.4
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+|. +|+++...++..++.+.+++++++|+.+.+.|+++|||||||+.+.+......++++.+.+.++++++.++
T Consensus 8 ~~iViK~--GGs~l~~~~~~~~~~~~~~~~~~~i~~l~~~g~~vviV~GgG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 85 (239)
T 1ybd_A 8 KRVLLKL--SGESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATADYMGMMATVMN 85 (239)
T ss_dssp SEEEEEE--CGGGGGTTSSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred CEEEEEE--chHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhchhHHHcCCCCccHHHHHHHHHHHH
Confidence 4578895 55555444456788999999999999999999999999999988776532223566667778888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
..++..+|..+|++++++++.+...+..++....+..+++.|.|||++|+.|.+.+++|++|+++|.+|+||+|+|||||
T Consensus 86 ~~l~~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVv~g~~g~~~~~~D~~Aa~lA~~l~Ad~liilTdV 165 (239)
T 1ybd_A 86 ALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAGTGNPFFTTDTAAALRGAEMNCDVMLKATNV 165 (239)
T ss_dssp HHHHHHHHHHTTCCEEEEESSCBSSSCEECCHHHHHHHHHTTCEEEEESTTSSTTCCHHHHHHHHHHHTTCSEEEEECSS
T ss_pred HHHHHHHHHHcCCCeEEEeeecccccccchhHHHHHHHHhCCcEEEEECCccCCCCCcHHHHHHHHHhcCCCEEEEeeCC
Confidence 88889999999999999998877554334433333478999999999998888889999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
||||++||+.+|++++|++++++|+.+.|.+++|+.|+.+|.++|++++|+|+.+|+.+.+++.|+.+||+|.+
T Consensus 166 dGvy~~dp~~~p~a~~i~~i~~~e~~~~g~~~m~~~a~~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~i~~ 239 (239)
T 1ybd_A 166 DGVYTADPKKDPSATRYETITFDEALLKNLKVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVHC 239 (239)
T ss_dssp SSCBSSCGGGCTTCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHTTCCEEEECTTSTTHHHHHHHTCSCSEEEEC
T ss_pred CccCCCCCCCCCCCeEccccCHHHHHHhcccccCHHHHHHHHHcCCcEEEEeCCChhHHHHHHcCCCCCeEEcC
Confidence 99999999999999999999999998888888999999999999999999999999999999999999999974
No 25
>2jjx_A Uridylate kinase, UMP kinase; structural genomics, pyrimidine biosynthesis, ATP-binding, nucleotide-binding, OPPF, PYRH, cytoplasm; HET: ATP; 2.82A {Bacillus anthracis}
Probab=100.00 E-value=8.5e-34 Score=300.55 Aligned_cols=234 Identities=40% Similarity=0.654 Sum_probs=203.0
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+|. +|+++...++..++++.+++++++|+.+.+.|+++|||||||+.+.+......++++...+.++++++.+
T Consensus 12 ~~~iViKi--GGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vViV~GgG~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 89 (255)
T 2jjx_A 12 YKRVLIKL--SGGALADQTGNSFNSKRLEHIANEILSIVDLGIEVSIVIGGGNIFRGHLAEEWGIDRVEADNIGTLGTII 89 (255)
T ss_dssp CSEEEEEE--CGGGTSCSSSCSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCEEEEEE--CHHHhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECchHHHhhhHHHHcCCCCCChHHHhHHHHHH
Confidence 35678885 5555544446778999999999999999989999999999997765543223356666667788888888
Q ss_pred HHHHHHHHHHH-cCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEee
Q psy13351 494 NSLALFDILNK-SGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT 572 (837)
Q Consensus 494 ~~~ll~~~L~~-~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilT 572 (837)
++.+|+.+|.. +|+++.++++.+...+..+++...+..+++.|.|||++|+.|++.+++|++|+++|.+|+||+|++||
T Consensus 90 ~~~ll~~~l~~~~Gi~a~~l~~~~~~~v~~~~~~~~~~~lL~~g~IpVi~gg~g~~~vttD~~Aa~lA~~l~Ad~liilT 169 (255)
T 2jjx_A 90 NSLMLRGVLTSKTNKEVRVMTSIPFNAVAEPYIRLRAVHHLDNGYIVIFGGGNGQPFVTTDYPSVQRAIEMNSDAILVAK 169 (255)
T ss_dssp HHHHHHHHHHHHCSSCEEEEESSCCCSSSEECCHHHHHHHHHTTCEEEEESTTSCSSCCSHHHHHHHHHHHTCSEEEEEE
T ss_pred HHHHHHHHHHhhcCCceEEecHHHcCcccCcccHHHHHHHHhCCcEEEEeCCCCCCccchHHHHHHHHHhcCCCEEEEEe
Confidence 99889999999 99999999998876444456666677899999999999877788899999999999999999999999
Q ss_pred -ccCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 573 -KVDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 573 -DVdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
||||||++||+.+|++++|++++++|+.+.|..++++.|+++|.+.|++++|+|+.+|+++.+++.|+.+||+|.++
T Consensus 170 ~DVdGVy~~dP~~~p~a~~i~~is~~e~~~~G~~~m~~~a~~~a~~~gi~v~I~~~~~~~~l~~~l~g~~~GT~I~~~ 247 (255)
T 2jjx_A 170 QGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHVGTLINDD 247 (255)
T ss_dssp SSCCSCBSSCTTTCSSCCBCSEEEHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHBTCCCSEEEESS
T ss_pred CCcCeeECCCCCCCCCCeEeeEecHHHHHHcCCccCHHHHHHHHHHcCCeEEEEeCCCchHHHHHhcCCCCceEEecC
Confidence 99999999999999999999999999988888899999999999999999999999999999999999999999875
No 26
>2a1f_A Uridylate kinase; PYRH, structural genomics, PSI, protein ST initiative, NEW YORK SGX research center for structural GEN nysgxrc; 2.10A {Haemophilus influenzae} SCOP: c.73.1.3 PDB: 2bne_A* 2bnf_A* 2v4y_A* 2bnd_A*
Probab=100.00 E-value=2e-33 Score=296.53 Aligned_cols=232 Identities=45% Similarity=0.756 Sum_probs=194.3
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+|. +|+++...++..++++.+++++++|+.+.+.|+++|||||||+.+.+......++++.+.+.++++++.++
T Consensus 9 k~iViKl--GGs~l~~~~~~~~~~~~i~~~a~~I~~l~~~G~~vVlVhGgG~~~~~~~~~~~g~~~~~~d~~~~~~~~~~ 86 (247)
T 2a1f_A 9 KRILLKL--SGEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGDHMGMLATVMN 86 (247)
T ss_dssp SEEEEEE--CGGGGCCTTSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCCHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred cEEEEEE--ChhhhCCCCCCCCCHHHHHHHHHHHHHHHHCCCeEEEEECCChHhcchhHHHcCCCCCcHHHHHHHHHHHH
Confidence 4578995 55555444556789999999999999999999999999999987665532233566777888888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
..++..+|...|++++++++.+...+...+....+..+++.|.|||++|+.|.+.+++|++|+++|.+|+||+|+|+|||
T Consensus 87 ~~ll~~~l~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ll~~g~ipVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~liilTDV 166 (247)
T 2a1f_A 87 GLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAGTGNPFFTTDSTACLRGIEIEADVVLKATKV 166 (247)
T ss_dssp HHHHHHHHHHTTCCEEEEESSCCTTTSEECCHHHHHHHHHTTCEEEEESTTSCSSCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHcCCCeEEecccccccccchhhHHHHHHHHhCCCEEEEeCCcCCCCCCcHHHHHHHHHhCCCCEEEEEeCC
Confidence 88899999999999999999887644333434556788999999999998888889999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
||||++||+.+|++++|++++++|+.+.|.+++|++|+.+|.++|++++|+|+.+|+.+.+++.|+.+||+|..
T Consensus 167 dGvy~~dP~~~p~a~~i~~i~~~e~~~~g~~~m~~~aa~~a~~~gv~v~I~~~~~~~~l~~~l~g~~~GT~~~~ 240 (247)
T 2a1f_A 167 DGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTICE 240 (247)
T ss_dssp SSCBCC-------CCBCSEECHHHHHHTTCCSSCHHHHHHHHHHTCCEEEEETTSTTHHHHHHTCSCSSEEECC
T ss_pred CcccCCCCCCCCCCeEcccCCHHHHHHcCccccCHHHHHHHHHcCCcEEEEeCCCchHHHHHHcCCCCceEEee
Confidence 99999999999999999999999998888888999999999999999999999999999999999999999964
No 27
>1z9d_A Uridylate kinase, UK, UMP kinase; structural genomics, protein structure initiative, NYSGXRC, PYRH, putative uridylate kinase, PSI; 2.80A {Streptococcus pyogenes} SCOP: c.73.1.3
Probab=100.00 E-value=8.2e-33 Score=292.57 Aligned_cols=233 Identities=41% Similarity=0.673 Sum_probs=199.3
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+++|+|+ +|+++...++..++.+.+.+++++|+.+.+.|+++|||||||+.+.+......++++.+.+.++++++.++
T Consensus 8 k~iViKl--GGs~l~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgG~~~~g~~~~~lg~~~~~~~~~~~~~~~~~ 85 (252)
T 1z9d_A 8 QRILIKL--SGEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQADYTGMLGTVMN 85 (252)
T ss_dssp SEEEEEE--CGGGGTCSSSSSCCHHHHHHHHHHHHHHHTTTCEEEEEECCTTTCCHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred CEEEEEE--chHHccCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCChHhccchHHHcCCCCCchHHHHHHHHHHH
Confidence 4578895 55555444556789999999999999999999999999999976555421223566667778888888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEee-c
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKAT-K 573 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilT-D 573 (837)
..++..+|...|++++++++.+...+...+....+..+|+.|.|||++|+.|.+++++|++|+++|.+|+||+|+|+| |
T Consensus 86 ~~ll~~al~~~G~~~~~~~~~~~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilT~D 165 (252)
T 1z9d_A 86 ALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAGIGSPYFSTDTTAALRAAEIEADAILMAKNG 165 (252)
T ss_dssp HHHHHHHHHTTTCCEEEEESSCBTTTBEECCHHHHHHHHHTTCEEEEESTTSCTTCCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHcCCCeEEEeccccccccCcchHHHHHHHHhCCCEEEEeCCcCCCCCChHHHHHHHHHhcCCCEEEEecCC
Confidence 888999999999999999988765442233334557899999999999988888899999999999999999999999 9
Q ss_pred cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
|||||++||+.+|++++|++++++|+.+.|...+|++|+.+|.++|++++|+|+.+|+.+.+++.|+.+||+|.++
T Consensus 166 VdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 241 (252)
T 1z9d_A 166 VDGVYNADPKKDANAVKFDELTHGEVIKRGLKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTVSNK 241 (252)
T ss_dssp CCSCBSSCTTTCTTCCBCSEEEHHHHHTTTCCCSCHHHHHHHHHTTCEEEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred CCeeeCCCCCCCCCCeEeeEecHHHHHhccccccCHHHHHHHHHcCCeEEEEeCCCchHHHHHHcCCCCceEEecC
Confidence 9999999999999999999999999988776777999999999999999999999999999999999999999875
No 28
>2va1_A Uridylate kinase; UMPK, transferase, pyrimidine biosynthesis, amino acid kinase family; 2.50A {Ureaplasma parvum}
Probab=100.00 E-value=8.9e-33 Score=292.77 Aligned_cols=231 Identities=40% Similarity=0.600 Sum_probs=189.4
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+++|+|+ +|+++...++..++++.+++++++|+.+. .|+++|||||||+.+.+......++++.+.+.++++++.+
T Consensus 24 ~k~iVIKi--GGs~l~~~~~~~~~~~~i~~~a~~i~~l~-~g~~vVlVhGgG~~~~~~~~~~~g~~~~~~~~~~~l~~~~ 100 (256)
T 2va1_A 24 KQRIVIKI--SGACLKQNDSSIIDFIKINDLAEQIEKIS-KKYIVSIVLGGGNIWRGSIAKELDMDRNLADNMGMMATII 100 (256)
T ss_dssp CSEEEEEE--CGGGGCSSTTCSSCHHHHHHHHHHHHHHT-TTSEEEEEECCTTTCCHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred cCEEEEEe--chhhccCCCCCCCCHHHHHHHHHHHHHHh-CCCEEEEEECCcHHhccchHHHcCCCCCchhHHHHHHHHH
Confidence 35679995 55555444456789999999999999998 8999999999998766643223366666777888888888
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
+..++..+|..+|++++++++.+...+..++....+..+|+.|.|||++|+.|.+..++|++|+++|.+|+||+|+++||
T Consensus 101 n~~l~~~~l~~~Gi~a~~~~~~t~~~~~~~~~~~~~~~lL~~g~IpVi~~~~g~~~~~~D~~Aa~lA~~l~Ad~LiilTD 180 (256)
T 2va1_A 101 NGLALENALNHLNVNTIVLSAIKCDKLVHESSANNIKKAIEKEQVMIFVAGTGFPYFTTDSCAAIRAAETESSIILMGKN 180 (256)
T ss_dssp HHHHHHHHHHTTTCCEEEEESSCCTTTCEECCHHHHHHHHHTTCEEEEESTTSSSSCCHHHHHHHHHHHHTCSEEEEEES
T ss_pred HHHHHHHHHHHcCCCeEEEeeeecccccchhhHHHHHHHHhCCcEEEEECCCCCCCCChhHHHHHHHHhCCCCEEEEeec
Confidence 88888999999999999999887755543443344578999999999999888888999999999999999999999999
Q ss_pred -cCccccCCCCCCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 574 -VDGIYNSDPNKCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 574 -VdGVy~~dP~~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
|||||++||+.+|++++|++++++|+.+.+...+|+.|+.+|.++|++++|+|+.+|+++.+++.|+.+||+|.
T Consensus 181 ~VdGVy~~dP~~~p~a~~i~~is~~e~~~~~~~~mk~~aa~~a~~~gv~v~I~~g~~~~~l~~~l~g~~~GT~i~ 255 (256)
T 2va1_A 181 GVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINLLVFNIDKPNAIVDVLEKKNKYTIVS 255 (256)
T ss_dssp SCCSBCSCC--------CBSEEEHHHHHHHTCCSSCHHHHHHHHHTTCEEEEEESSSTTHHHHHHTTCSCEEEEE
T ss_pred ccCeEEcCCCCCCCCCEEccEEcHHHHHHhccCCccHHHHHHHHHCCCeEEEEeCCCchHHHHHHcCCCCeEEEe
Confidence 99999999999999999999999998775444559999999999999999999999999999999999999996
No 29
>2j4j_A Uridylate kinase; transferase, nucleoside monophosphate kinase, UMP kinase, aspartokinase fold, pyrimidine nucleotide synthesis; HET: U5P ACP 4TC; 2.1A {Sulfolobus solfataricus} PDB: 2j4k_A* 2j4l_A*
Probab=99.97 E-value=1.5e-31 Score=278.57 Aligned_cols=211 Identities=22% Similarity=0.329 Sum_probs=180.0
Q ss_pred HHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc--ccccCCCcchHHHHHHHHHHHH
Q psy13351 417 AVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
+|+|. +|++ +.++ +++.+++++++|+.+.+.|+++|||||||..+.++. ....++++.+++.++++++.++
T Consensus 3 iViK~--GGs~-l~~~----~~~~~~~~~~~i~~l~~~g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 75 (226)
T 2j4j_A 3 IILKI--SGKF-FDED----NVDNLIVLRQSIKELADNGFRVGIVTGGGSTARRYIKLAREIGIGEAYLDLLGIWASRLN 75 (226)
T ss_dssp EEEEE--CTHH-HHTC----CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred EEEEe--cccc-ccCC----CHHHHHHHHHHHHHHHhCCCeEEEEECcchHhchhHHHHHHhCCCcccHHHHHHHHHHHH
Confidence 45673 4444 4333 678899999999999888999999999998777641 2233567778899999888888
Q ss_pred HHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeecc
Q psy13351 495 SLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKV 574 (837)
Q Consensus 495 ~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDV 574 (837)
+.+++.+|..+|+++ .+++.+.+..+++.|.|||++| |.+++++|++|+++|.+|+||+|++||||
T Consensus 76 ~~l~~~~l~~~g~~~------------~~~~~~~i~~ll~~g~ipVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liilTdV 141 (226)
T 2j4j_A 76 AYLVMFSLQDLAYMH------------VPQSLEEFIQDWSHGKVVVTGG--FQPGQSTAAVAALVAEASSSKTLVVATNV 141 (226)
T ss_dssp HHHHHHHHTTSBCSC------------CCSSHHHHHHHHTTSSBEEECC--CSTTSCHHHHHHHHHHHTTCSEEEEEESS
T ss_pred HHHHHHHHHHhCCCC------------CcCCHHHHHHHHHCCCEEEEcC--CCCCCCcHHHHHHHHHhcCCCEEEEeecc
Confidence 988888899988854 2466788999999999999999 67889999999999999999999999999
Q ss_pred CccccCCCCCCCCceeccccCHHHHHH--------hccc--cchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccce
Q psy13351 575 DGIYNSDPNKCLSAIIYKKITFDEVIS--------KKLE--IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGT 644 (837)
Q Consensus 575 dGVy~~dP~~~~~a~~I~~is~~e~~~--------~G~~--v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT 644 (837)
||||++||+.+|++++|++++++|+.+ .|+| ++|++|+.+|.++|++++|+|+.+|+.+.+++.|+.+||
T Consensus 142 dGv~~~dP~~~~~a~~i~~i~~~e~~~l~~~~~~~~ggm~~~~k~~a~~~a~~~gi~v~I~~~~~~~~l~~~~~g~~~GT 221 (226)
T 2j4j_A 142 DGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKIVERSKIRVIVMNYRKLNRIIDILKGEEVSS 221 (226)
T ss_dssp SSCBSSCTTTSSSCCBCSEEEHHHHHHHHC----------CCSCHHHHHHHHHTTCEEEEEEGGGGGGHHHHHTTCSSCE
T ss_pred ceeeCCCCCCCCCCeEccccCHHHHHHHhhcCCCCcCCccccchHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCCce
Confidence 999999999999999999999988766 2677 999999999999999999999999999999999999999
Q ss_pred EEEE
Q psy13351 645 LVYE 648 (837)
Q Consensus 645 ~I~~ 648 (837)
+|.+
T Consensus 222 ~i~~ 225 (226)
T 2j4j_A 222 IIEP 225 (226)
T ss_dssp EEEC
T ss_pred EEee
Confidence 9975
No 30
>2brx_A Uridylate kinase; UMP kinase, amino acid kinase, phosphoryl group transfer, pyrimidine biosynthesis, transferase; 2.40A {Pyrococcus furiosus} SCOP: c.73.1.3 PDB: 2ji5_A* 2bmu_A* 2bri_A*
Probab=99.97 E-value=2.4e-31 Score=279.81 Aligned_cols=215 Identities=26% Similarity=0.348 Sum_probs=184.6
Q ss_pred HHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcc--cccccCCCcchHHHHHHHHH
Q psy13351 414 YSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGI--SNKIQNIDRSTADYMGMLAT 491 (837)
Q Consensus 414 k~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~--~~~~~~~~~~~~~~~~~~~~ 491 (837)
.+++|+|+ |++.+.++. ++++.+++++++|+.+.+ |+++|||||||..+.++ .....+++...++..+++++
T Consensus 19 ~k~iViKl---GGs~l~~~~--~~~~~i~~~~~~i~~l~~-g~~vViV~GgG~~~~~~~~~~~~~gl~~~~~~~~~~~~~ 92 (244)
T 2brx_A 19 HMRIVFDI---GGSVLVPEN--PDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETFKDFIGIQIT 92 (244)
T ss_dssp CCEEEEEE---CHHHHCSSS--CCHHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred ccEEEEEe---chhhcCCCC--CCHHHHHHHHHHHHHHhC-CCeEEEEECccHHHhchHHHHHHcCCCcccHHHHHHHHH
Confidence 35678994 444454443 888999999999999988 99999999999877763 12334678888899999988
Q ss_pred HHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEe
Q psy13351 492 IINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 492 ~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liil 571 (837)
.+++.++..+|..+|++. .+++.+.+..+|+.|.|||++| |.+..++|++|+++|.+|+||+|+++
T Consensus 93 ~~~~~l~~~~l~~~g~~~------------~~~~~~~i~~lL~~g~IpVi~g--g~~~~~~D~~Aa~lA~~l~Ad~liil 158 (244)
T 2brx_A 93 RANAMLLIAALREKAYPV------------VVEDFWEAWKAVQLKKIPVMGG--THPGHTTDAVAALLAEFLKADLLVVI 158 (244)
T ss_dssp HHHHHHHHHHHGGGBCSS------------CBCSHHHHHHHHHTTCBCEECC--CSTTCCHHHHHHHHHHHTTCSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCC------------CcCCHHHHHHHHhCCCEEEEcC--CCCCCCchHHHHHHHHHcCCCEEEEE
Confidence 888888888899988753 2467788899999999999998 67778999999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHHh----c-----cccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCcc
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVISK----K-----LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNE 642 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~~----G-----~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~ 642 (837)
|||||||++||+.+|++++|++++++|+.+. | ++++++.|++++.+.|++++|+||+.|+.+.+++.|+.+
T Consensus 159 TDVdGVy~~dP~~~p~a~~i~~i~~~e~~~~~~~~g~~~g~m~~~~~~A~~~~~~~~~~v~I~ng~~~~~l~~~l~g~~~ 238 (244)
T 2brx_A 159 TNVDGVYTADPKKDPTAKKIKKMKPEELLEIVGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHN 238 (244)
T ss_dssp CSSSSCBSSCTTTCTTCCBCSEECHHHHHHHHHC--------CCSCHHHHHHHHHHTCCEEEECHHHHTCHHHHHTTCSS
T ss_pred eCCCccCCCCCCCCCCCeEeeEECHHHHHHHHhccCCCCCCCcchHHHHHHHHHHCCCeEEEEeCCChhHHHHHHcCCCC
Confidence 9999999999999999999999999888662 2 278899999999999999999999999999999999999
Q ss_pred ceEEEE
Q psy13351 643 GTLVYE 648 (837)
Q Consensus 643 GT~I~~ 648 (837)
||+|.+
T Consensus 239 GT~i~~ 244 (244)
T 2brx_A 239 GTTIEP 244 (244)
T ss_dssp SEEECC
T ss_pred ceEecC
Confidence 999964
No 31
>2ij9_A Uridylate kinase; structural genomics, protein structure initiative, P nysgxrc; 2.90A {Archaeoglobus fulgidus} SCOP: c.73.1.3
Probab=99.96 E-value=1.8e-29 Score=261.51 Aligned_cols=193 Identities=26% Similarity=0.397 Sum_probs=167.3
Q ss_pred ccchhhhhhhhHHhhhcCceEEEEeCcchhhhcc--cccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehh
Q psy13351 438 SSIIKNIISEISEIVSCGIELAIVIGGGNICRGI--SNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAI 515 (837)
Q Consensus 438 ~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~ 515 (837)
++.+++++++|+.+.+ |+++|||||||..+.++ .....++++..++.++++++.+++.+++.++... +..
T Consensus 16 ~~~~~~~~~~i~~l~~-g~~vvlV~ggG~~~~~~~~~~~~~g~~~~~l~~~~~~~~~~~~~l~~~~~~~~-~~~------ 87 (219)
T 2ij9_A 16 SEKIREFAKTIESVAQ-QNQVFVVVGGGKLAREYIKSARELGASETFCDYIGIAATRLNAMLLISAIPSA-AKK------ 87 (219)
T ss_dssp HHHHHHHHHHHHHHHH-HSEEEEEECCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCTTB-CSS------
T ss_pred HHHHHHHHHHHHHHcC-CCEEEEEECcchHhcchHHHHHHcCCCccchHHHHHHHHHHHHHHHHHHHHHh-cCC------
Confidence 6789999999999988 99999999999877763 2233467888899999998888998888766443 110
Q ss_pred chhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccC
Q psy13351 516 SIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKIT 595 (837)
Q Consensus 516 ~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is 595 (837)
.+++.+.+..+|+.|.|||++| |.+..++|++|+++|..|+||+|+++|||||||++||+.+|++++|++++
T Consensus 88 ------~~~~~~~i~~ll~~g~ipVi~~--g~~~~~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~dP~~~~~a~~i~~i~ 159 (219)
T 2ij9_A 88 ------VPVDFMEAEELSKLYRVVVMGG--TFPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLS 159 (219)
T ss_dssp ------CCSSHHHHHHHHTTCSEEEECC--CSSSSCTHHHHHHHHHHTTCSEEEEEESSSSCBCSSCSSSSSCCBCSEEC
T ss_pred ------CcCCHHHHHHHHHCCCEEEEeC--CCCCCCchHHHHHHHHHcCCCeEEEeeCCCceecCCCCCCCCCeEeeeeC
Confidence 3567888999999999999999 67777999999999999999999999999999999999999999999999
Q ss_pred HHHHHHh----cc-----ccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 596 FDEVISK----KL-----EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 596 ~~e~~~~----G~-----~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
++|+.+. |. +++++.|++++.+.|++++|+|| +|+.+.+++.|+.+||+|+
T Consensus 160 ~~e~~~~~~~~g~~~g~~~~~~~~a~~~~~~~~~~v~I~~g-~~~~l~~~~~g~~~GT~i~ 219 (219)
T 2ij9_A 160 PQQLVEIVSRSSAKAGTNVVIDLLAAKIIERSKIKTYVILG-TPENIMKAVKGEAVGTVIA 219 (219)
T ss_dssp HHHHHHHTCC-----CCCCCSCHHHHHHHHHHTCCEEEEEC-CHHHHHHHHTTCCCSEEEC
T ss_pred HHHHHHHHhcCCCCCCCccchHHHHHHHHHHCCCeEEEEEC-CHhHHHHHHcCCCCCeEeC
Confidence 9988762 33 78999999999999999999999 9999999999999999984
No 32
>3ll9_A Isopentenyl phosphate kinase; mevalonate biosynthesis isoprenoid, transferase; HET: ADP; 2.15A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=99.96 E-value=6.2e-29 Score=264.78 Aligned_cols=228 Identities=20% Similarity=0.234 Sum_probs=174.2
Q ss_pred HHHHHHhhhhhhhccC-CCcc-ccccchhhhhhhhHHhhhcCceEEEEeCcchhhh---cccccccCCCcch---HHHHH
Q psy13351 416 LAVLKAQQLGEALMKG-DAYN-INSSIIKNIISEISEIVSCGIELAIVIGGGNICR---GISNKIQNIDRST---ADYMG 487 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g-~~~~-i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~---~~~~~~~~~~~~~---~~~~~ 487 (837)
++|+|+ +|+++... .+.. ++++.+++++++|+.+. +.++|||||||+... +......++...+ .++.+
T Consensus 4 ~iVIKl--GG~~l~~~~~~~~~~~~~~l~~l~~~i~~l~--~~~~vlVhGGG~~~~~~~~~~gi~~~~~~~~g~~~~~~G 79 (269)
T 3ll9_A 4 MIILKL--GGSVITRKDSEEPAIDRDNLERIASEIGNAS--PSSLMIVHGAGSFGHPFAGEYRIGSEIENEEDLRRRRFG 79 (269)
T ss_dssp CEEEEE--CHHHHEECCSSSCEECHHHHHHHHHHHHHHC--CSSEEEEECCGGGTHHHHHHHTTTSCCCSHHHHHHHHHH
T ss_pred EEEEEE--ChhheecCccccccccHHHHHHHHHHHHHhc--CCCEEEEECCcHHHHHHHHHcCCCcccccCcccccccch
Confidence 457784 45544433 3455 99999999999999876 579999999985544 3333333443221 22344
Q ss_pred HHHHHH----HHHHHHHHHHHcCCceeEeehhchhhh----hhccchHHHHHHHhCCCEEEEeCCCC--------CCCCc
Q psy13351 488 MLATII----NSLALFDILNKSGIISHVMSAISIEKF----LESYIPLNAIKYLEEGKVVIFAGGIG--------NPFFT 551 (837)
Q Consensus 488 ~~~~~~----~~~ll~~~L~~~gi~a~~l~~~~~~~~----~~~~~~~~i~~ll~~g~VPVv~G~~G--------~~~~s 551 (837)
+..+.. .+..++++|.++|++++++++.+.... +..++.+.+..+|+.|.|||++|+.+ ..+++
T Consensus 80 ~rvT~~~~~~ln~~l~~~L~~~G~~a~~l~g~~~~~~~~g~v~~v~~~~i~~lL~~g~ipVi~~~~~~~~~~~g~~~~~~ 159 (269)
T 3ll9_A 80 FALTQNWVKKLNSHVCDALLAEGIPAVSMQPSAFIRAHAGRISHADISLIRSYLEEGMVPVVYGDVVLDSDRRLKFSVIS 159 (269)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEEECCHHHHHHHHTTCEEEEECEEEEBSCTTTSEEEEC
T ss_pred hhHHHHHHHHHHHHHHHHHHHCCCcEEEEcchHcCeEecCeeeeecHHHHHHHHHCCCEEEECCCEEecccccCcceecc
Confidence 444442 344578889999999999999887432 45678899999999999999998322 12467
Q ss_pred chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH----------hccccchHHHHHHHHhCCCC
Q psy13351 552 TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 ~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~----------~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+++|.+|+||+|+++|||||||++||+.+|++++|+++++.|+.+ .|+|.+|+.|+..+.++|++
T Consensus 160 ~D~~Aa~lA~~l~Ad~li~ltdv~Gv~~~dp~~~~~a~~i~~i~~~e~~~~l~~~~~~~~tgGM~~Kl~aa~~a~~~Gv~ 239 (269)
T 3ll9_A 160 GDQLINHFSLRLMPERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGMVGKIRELLLLAEKGVE 239 (269)
T ss_dssp HHHHHHHHHHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCSBCCC-------------------SHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHHcCCCeEEEecCCCEEEcCCCCcCCcceEccccCHHHHHHHhcccCCCcCcCCcHHHHHHHHHHHhCCCe
Confidence 99999999999999999999999999999999999999999999876643 48899999999999899999
Q ss_pred EEEEEccCcchHHHHHcCCcc-ceEEE
Q psy13351 622 IRVFSIIKSGALKRVIEGKNE-GTLVY 647 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~-GT~I~ 647 (837)
++|+||+.|+++.+++.|+.+ ||+|.
T Consensus 240 v~I~~g~~~~~l~~~~~g~~~~GT~i~ 266 (269)
T 3ll9_A 240 SEIINAAVPGNIERALLGEEVRGTRIT 266 (269)
T ss_dssp EEEEESSSTTHHHHHHHTCCCSSEEC-
T ss_pred EEEEeCCCchHHHHHHCCCCCCcEEEE
Confidence 999999999999999999998 99986
No 33
>2j5v_A Glutamate 5-kinase; proline biosynthesis, gamma glutamyl kinase, amino-acid biosynthesis, transferase, feedback regulation, PUA domain; HET: RGP; 2.5A {Escherichia coli} PDB: 2j5t_A* 2w21_A
Probab=99.96 E-value=9e-29 Score=273.79 Aligned_cols=230 Identities=19% Similarity=0.171 Sum_probs=153.4
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcch-hhhcccccccCCCcchHHHHHHHHHHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGN-ICRGISNKIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (837)
+++|+| .|++.++++...++.+.+.+++++|+.+++.|+++|||||||. ..+..... .-.+..++..+++++.+
T Consensus 5 k~iVIK---iGGs~l~~~~~~~~~~~l~~la~~Ia~l~~~G~~vVlV~gGgi~~g~~~lg~--~~~~~~l~~~qa~aavG 79 (367)
T 2j5v_A 5 QTLVVK---LGTSVLTGGSRRLNRAHIVELVRQCAQLHAAGHRIVIVTSGAIAAGREHLGY--PELPATIASKQLLAAVG 79 (367)
T ss_dssp CEEEEE---ECHHHHTTTSSSCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHTS--CCCCSSHHHHHHHHHHH
T ss_pred CEEEEE---ECcHHhcCCCCCcCHHHHHHHHHHHHHHHhCCCcEEEEEcCHHHHHHHHcCC--CCCCCCHHHHHHHHHHH
Confidence 457888 5555565555679999999999999999999999999999972 22221111 12345677777776554
Q ss_pred H---HHHHHHHHHHcCCceeE--eehhchhhhhhccch-HHHHHHHhCCCEEEEeCCCC-----CCCCcchHHHHHHHHH
Q psy13351 494 N---SLALFDILNKSGIISHV--MSAISIEKFLESYIP-LNAIKYLEEGKVVIFAGGIG-----NPFFTTDTTAALRAAE 562 (837)
Q Consensus 494 ~---~~ll~~~L~~~gi~a~~--l~~~~~~~~~~~~~~-~~i~~ll~~g~VPVv~G~~G-----~~~~s~D~lAa~lA~~ 562 (837)
+ ...+..+|..+|+++.. ++..++.......+. ..+..+|+.|.|||+++... ....++|++|+++|.+
T Consensus 80 q~~l~~~~~~~l~~~G~~~~qvllt~~d~~~~~r~~n~~~~i~~LL~~g~IPIv~end~v~~~el~~gd~D~lAa~vA~~ 159 (367)
T 2j5v_A 80 QSRLIQLWEQLFSIYGIHVGQMLLTRADMEDRERFLNARDTLRALLDNNVVPVINENDAVATAEIKVGDNDNLSALAAIL 159 (367)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEEEECGGGGSSHHHHHHHHHHHHHHHHTTCEEEEEECTTSCCGGGCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCceEEEEEecccccCceEEEhHHHHHHHHHHCCCEEEECCCCceecccccCCCHHHHHHHHHHh
Confidence 4 44556669999998753 233333222223343 67888999999999985311 2245699999999999
Q ss_pred cCCcEEEEeeccCccccCCCCCCCCceeccccCH--HHHHH----------hccccchHHHHHHHHhCCCCEEEEEccCc
Q psy13351 563 IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITF--DEVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKS 630 (837)
Q Consensus 563 L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~--~e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~ 630 (837)
++||.|+|||||||||++||+.+|++++|+++++ +|+.+ .|+|.+|+.|+..|.++|++++|+||..|
T Consensus 160 l~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~i~~~~~e~~~l~~~~~s~~gtGgM~~Kl~Aa~~a~~~Gv~v~I~~g~~~ 239 (367)
T 2j5v_A 160 AGADKLLLLTDQKGLYTADPRSNPQAELIKDVYGIDDALRAIAGDSVSGLGTGGMSTKLQAADVACRAGIDTIIAAGSKP 239 (367)
T ss_dssp HTCSEEEEEECC------------------------------------------CHHHHHHHHHHHHTTCEEEEEETTST
T ss_pred cCCCEEEEeecCCceECCCCCCCCCCeEeeeeCCCHHHHHHHhhccCCCcCcCccHHHHHHHHHHHHcCCCEEEEcCCCc
Confidence 9999999999999999999999999999999999 77654 36788899999999999999999999999
Q ss_pred chHHHHHcCCccceEEEEe
Q psy13351 631 GALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 631 ~~i~~al~Ge~~GT~I~~~ 649 (837)
+.|.+++.|+.+||+|.+.
T Consensus 240 ~~L~~~l~g~~~GT~i~~~ 258 (367)
T 2j5v_A 240 GVIGDVMEGISVGTLFHAQ 258 (367)
T ss_dssp THHHHHHHTCCCSEEECCC
T ss_pred hHHHHHhcCCCCcEEEEcC
Confidence 9999999999999999886
No 34
>3ll5_A Gamma-glutamyl kinase related protein; alternate mevalonate pathway, isopentenyl phsophate kinase, beta-alpha sandwich fold; HET: MSE ADP IPE ATP IP8; 1.99A {Thermoplasma acidophilum} PDB: 3lkk_A*
Probab=99.95 E-value=3e-28 Score=256.70 Aligned_cols=221 Identities=16% Similarity=0.185 Sum_probs=169.7
Q ss_pred HHHHHHHhhhhhhhcc-CCCccccccchhhhhhhhHHhhhcCceEE-EEeCcchhhhcccccccCCCcc-------hHHH
Q psy13351 415 SLAVLKAQQLGEALMK-GDAYNINSSIIKNIISEISEIVSCGIELA-IVIGGGNICRGISNKIQNIDRS-------TADY 485 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~-g~~~~i~~~~i~~la~~I~~l~~~G~~vV-IVhGGG~~~~~~~~~~~~~~~~-------~~~~ 485 (837)
+++|+|. +|+++.. ++++.++++.+++++++|+. |+++| ||||||+....+... .++++. .+..
T Consensus 4 k~iViKi--GG~~l~~~~~~~~l~~~~l~~l~~~i~~----G~~vv~lVhGGG~~~~~~~~~-~gi~~~~~~~d~~gl~~ 76 (249)
T 3ll5_A 4 TMMILKI--GGSVITDKSAYRTARTYAIRSIVKVLSG----IEDLVCVVHGGGSFGHIKAME-FGLPGPKNPRSSIGYSI 76 (249)
T ss_dssp CCEEEEE--CHHHHBCTTSTTCBCHHHHHHHHHHHHT----CTTEEEEEECCGGGTHHHHHH-HTCSEECCHHHHHHHHH
T ss_pred eEEEEEE--CccEEecCcccccchHHHHHHHHHHHhc----CCceEEEEECccHHHHHHHHH-hCCCcCCCccccccHHH
Confidence 4678885 5555543 24577999999999999985 99999 999998766553222 233332 2333
Q ss_pred HHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC------CCCCcchHHHHHH
Q psy13351 486 MGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------NPFFTTDTTAALR 559 (837)
Q Consensus 486 ~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G------~~~~s~D~lAa~l 559 (837)
..+....++.. +..+|..+|++++++++.++....+. +.+.+..+|+.|.|||++|+.+ .+++++|++|+++
T Consensus 77 t~~~~~~ln~~-~v~~l~~~G~~a~~l~~~~~~~~g~v-~~~~i~~ll~~g~ipVi~~~~~~~~~~~~~~~~~D~~Aa~l 154 (249)
T 3ll5_A 77 VHRDMENLDLM-VIDAMIEMGMRPISVPISALRYDGRF-DYTPLIRYIDAGFVPVSYGDVYIKDEHSYGIYSGDDIMADM 154 (249)
T ss_dssp HHHHHHHHHHH-HHHHHHHTTCCEEECCGGGSCBSSSB-CCHHHHHHHHTTCEEEEECEEEEEETTEEEEECHHHHHHHH
T ss_pred HHHHHHHHHHH-HHHHHHHCCCcEEEEcHHHcccccEE-cHHHHHHHHHCCCEEEECCCEEEcCCCceeeecHHHHHHHH
Confidence 33332234444 44889999999999999887554444 7889999999999999997321 2246799999999
Q ss_pred HHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHH---H----hccccchHHHHHHH-HhCCCCEEEEEccCcc
Q psy13351 560 AAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI---S----KKLEIMDSTAFSFC-RDQKLPIRVFSIIKSG 631 (837)
Q Consensus 560 A~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~---~----~G~~v~~~~Aa~~a-~~~gi~v~I~ng~~~~ 631 (837)
|.+|+||.|+++|||||||++||+.+|+++++++++. ++. + .|+|.+|+.||..+ .++|++++|+||+.|+
T Consensus 155 A~~l~Ad~li~ltdvdGv~~~dp~~~~~a~~i~~i~~-~~~~~~~~~~~tGgM~~Kl~aA~~a~~~~Gv~v~I~~g~~~~ 233 (249)
T 3ll5_A 155 AELLKPDVAVFLTDVDGIYSKDPKRNPDAVLLRDIDT-NITFDRVQNDVTGGIGKKFESMVKMKSSVKNGVYLINGNHPE 233 (249)
T ss_dssp HHHHCCSEEEEEESSSSCBSSCTTTCTTCCBCCEECC-CC-------------HHHHHHHHHHHTTCTTCEEEEETTSGG
T ss_pred HHhcCCCEEEEEeCCCccCCCCCCCCCCcEEHHHHHH-HHhcccCCCeeECCHHHHHHHHHHHHHhcCCEEEEEeCCChh
Confidence 9999999999999999999999999999999999853 221 1 68999999999888 8999999999999999
Q ss_pred hHHHHHcCCcc-ceEE
Q psy13351 632 ALKRVIEGKNE-GTLV 646 (837)
Q Consensus 632 ~i~~al~Ge~~-GT~I 646 (837)
++.+ |.|+.+ ||+|
T Consensus 234 ~l~~-l~g~~~~GT~i 248 (249)
T 3ll5_A 234 RIGD-IGKESFIGTVI 248 (249)
T ss_dssp GGGG-TTSTTCCSEEE
T ss_pred HHHH-hCCCCCCCEEe
Confidence 9999 999988 9998
No 35
>2rd5_A Acetylglutamate kinase-like protein; protein-protein complex, regulation of arginine biosynthesis nitrogen metabolism, kinase, transferase, transcription; HET: ARG ADP NLG ATP; 2.51A {Arabidopsis thaliana}
Probab=99.95 E-value=1.1e-27 Score=259.39 Aligned_cols=222 Identities=18% Similarity=0.213 Sum_probs=179.9
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccccc----------cCCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKI----------QNIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~~----------~~~~~~~~~ 484 (837)
+++|+|+ +|+++ . +++.+..++++|+.+.+.|+++|||||||+......... +..++.+++
T Consensus 37 k~iVIKl--GGs~l-~------~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~l~ 107 (298)
T 2rd5_A 37 KTIVVKY--GGAAM-T------SPELKSSVVSDLVLLACVGLRPILVHGGGPDINRYLKQLNIPAEFRDGLRVTDATTME 107 (298)
T ss_dssp CEEEEEE--CTHHH-H------CHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHH
T ss_pred CEEEEEE--Cchhh-C------ChhHHHHHHHHHHHHHHCCCCEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHHH
Confidence 4578885 44443 2 245788999999999999999999999985443222211 112567888
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh----------------hhhccchHHHHHHHhCCCEEEEeCC----
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEK----------------FLESYIPLNAIKYLEEGKVVIFAGG---- 544 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~----------------~~~~~~~~~i~~ll~~g~VPVv~G~---- 544 (837)
.+++++++..+..++..|..+|++++++++.+... .+..++.+.+..+|+.|.|||++|.
T Consensus 108 ~~~~~~~G~~n~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~ 187 (298)
T 2rd5_A 108 IVSMVLVGKVNKNLVSLINAAGATAVGLSGHDGRLLTARPVPNSAQLGFVGEVARVDPSVLRPLVDYGYIPVIASVAADD 187 (298)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTSCEEEEETTGGGCEEEEECTTHHHHBSEEEEEEECGGGHHHHHHTTCEEEEESEEECT
T ss_pred HHHHHHhchHHHHHHHHHHhCCCCccccChHHCCEEEEEeCCccccCCcceEEEEECHHHHHHHHhCCCEEEEcCeeECC
Confidence 88888877777789999999999999998875421 1234678889999999999999983
Q ss_pred CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHH
Q psy13351 545 IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCR 616 (837)
Q Consensus 545 ~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~ 616 (837)
.|.. ++++|++|+++|.+|+||+|+|+|||||||++||+ | +++|++++++|+.+ .|+|.+|+.|+..+.
T Consensus 188 ~G~~~~i~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~~dp~--~-a~~i~~is~~e~~~~~~~g~~~gGM~~Kl~aa~~a~ 264 (298)
T 2rd5_A 188 SGQAYNINADTVAGELAAALGAEKLILLTDVAGILENKED--P-SSLIKEIDIKGVKKMIEDGKVAGGMIPKVKCCIRSL 264 (298)
T ss_dssp TSCEEEECHHHHHHHHHHHHTCSEEEEEESSSSEESSSSC--T-TSEECEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHHHcCCCEEEEEeCCcCeecCCCC--C-CCCcccCCHHHHHHHHHCCCCCCchHHHHHHHHHHH
Confidence 2333 24799999999999999999999999999999997 4 89999999988866 367999999999999
Q ss_pred hCCCC-EEEEEccCcchH-HHHHcCCccceEEEE
Q psy13351 617 DQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYE 648 (837)
Q Consensus 617 ~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~ 648 (837)
++|++ ++|+||..|+.| .+++.|+.+||+|.+
T Consensus 265 ~~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~i~~ 298 (298)
T 2rd5_A 265 AQGVKTASIIDGRRQHSLLHEIMSDEGAGTMITG 298 (298)
T ss_dssp HTTCSEEEEEETTSTTHHHHHHHSSSCSEEEEEC
T ss_pred HcCCCeEEEecCCCCchHHHHHhcCCCCceEEeC
Confidence 99998 999999999998 889999999999974
No 36
>1wih_A Mitochondrial ribosome recycling factor; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.67.3.1
Probab=99.95 E-value=5.3e-29 Score=212.29 Aligned_cols=82 Identities=28% Similarity=0.408 Sum_probs=80.8
Q ss_pred CCCCccccceeEEEecccccccceeeeeeccCCceEEEecCC-cccHHHHHHHHHhcCCCccceecCCeeEEeCCCCCHH
Q psy13351 682 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKE 760 (837)
Q Consensus 682 gr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d-~~~~~~I~kaI~~s~l~~~p~~~~~~i~v~iP~~T~E 760 (837)
||+||++||+|+|+|||.++||+|+|+|+++++|+|+|+||| ++++++|+|||++||||+||++||+.|||+||+||+|
T Consensus 1 GRa~p~lld~I~V~yyG~~~pL~qvA~isv~~~r~l~I~p~D~~~~~~~IekAI~~S~LglnP~~dG~~Iri~iP~lTeE 80 (84)
T 1wih_A 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRVPIPKVTSG 80 (84)
T ss_dssp CCSSSCTTSSCEEEETTEEEEHHHHSEEEEEETTEEEEECTTCTTSHHHHHHHHHTTTCCCCCEEETTEEEEECCCSSCS
T ss_pred CCCChHHhCCEEEEECCCCccHHHceEEEcCCCCEEEEEecccHHHHHHHHHHHHHCCCCCCcccCCCEEEEeCCCCChh
Confidence 899999999999999999999999999999999999999988 8999999999999999999999999999999999999
Q ss_pred HHH
Q psy13351 761 RRE 763 (837)
Q Consensus 761 ~R~ 763 (837)
||+
T Consensus 81 rR~ 83 (84)
T 1wih_A 81 PSS 83 (84)
T ss_dssp SCC
T ss_pred ccC
Confidence 996
No 37
>2ako_A Glutamate 5-kinase; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics, nysgxrc; HET: ADP; 2.20A {Campylobacter jejuni} SCOP: c.73.1.3
Probab=99.95 E-value=1.2e-27 Score=253.07 Aligned_cols=223 Identities=15% Similarity=0.128 Sum_probs=167.2
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchh-hhcccccccCCCcchHHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI-CRGISNKIQNIDRSTADYMGMLATIIN 494 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 494 (837)
++|+|+ +|+++. +...++++.+++++++|+.+.+. +++|||||||.. ......... ....+. +++++..+
T Consensus 3 ~iViKl--GGs~l~--~~~~~~~~~~~~~~~~i~~l~~~-~~vVlVhgGg~~~~~~~~g~~~---~~~~~~-~~l~~~~q 73 (251)
T 2ako_A 3 RIVVKV--GSHVIS--EENTLSFERLKNLVAFLAKLMEK-YEVILVTSAAISAGHTKLDIDR---KNLINK-QVLAAIGQ 73 (251)
T ss_dssp EEEEEE--CHHHHB--CSSSBCHHHHHHHHHHHHHHHHH-SEEEEEECCHHHHHHHHCCCCS---SSHHHH-HHHHHHHH
T ss_pred EEEEEe--CcceeC--CCCCCCHHHHHHHHHHHHHHHhC-CCEEEEECCHHHHHHHHhCCcc---CCchHH-HHHHHHHH
Confidence 457784 555554 33468889999999999999888 999999998722 221222211 122222 33333333
Q ss_pred ---HHHHHHHHHHcCCceeEeehhch--hhhhhccch-HHHHHHHhCCCEEEEeCCCC--C---CCCcchHHHHHHHHHc
Q psy13351 495 ---SLALFDILNKSGIISHVMSAISI--EKFLESYIP-LNAIKYLEEGKVVIFAGGIG--N---PFFTTDTTAALRAAEI 563 (837)
Q Consensus 495 ---~~ll~~~L~~~gi~a~~l~~~~~--~~~~~~~~~-~~i~~ll~~g~VPVv~G~~G--~---~~~s~D~lAa~lA~~L 563 (837)
...+..+|..+|+++..+...+. .......+. +.+..+++.|.|||++|+.. . ...++|++|+++|.+|
T Consensus 74 ~~l~~~~~~~l~~~G~~~~~i~~~~~~~~~~~~~~~~~~~i~~ll~~g~ipVi~~~d~v~~~~~~~~~~D~~Aa~lA~~l 153 (251)
T 2ako_A 74 PFLISVYNELLAKFNKLGGQILLTGKDFDSRKATKHAKNAIDMMINLGILPIINENDATAIEEIVFGDNDSLSAYATHFF 153 (251)
T ss_dssp HHHHHHHHHHHGGGTCCEEEEEECTGGGGCHHHHHHHHHHHHHHHHTTCEEEEEECTTTCCHHHHBTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCcEEEEEeccchhcCcceEehHHHHHHHHHHCCCEEEEeCCCceeecceeecCchHHHHHHHHhc
Confidence 33456679999999865543321 111223334 77888899999999996421 1 2567999999999999
Q ss_pred CCcEEEEeeccCccccCCCCCCCCceeccccCHH--HHHH----------hccccchHHHHHHHHhCCCCEEEEEccCcc
Q psy13351 564 KAEIILKATKVDGIYNSDPNKCLSAIIYKKITFD--EVIS----------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSG 631 (837)
Q Consensus 564 ~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~--e~~~----------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~ 631 (837)
+||+|+++|||||||++||+.+|++++|+++++. |+.+ .|+|.+|+.|+..|.++|++++|+||..|+
T Consensus 154 ~Ad~liilTdVdGVy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~~ggm~~k~~aa~~a~~~gv~v~I~~g~~~~ 233 (251)
T 2ako_A 154 DADLLVILSDIDGFYDKNPSEFSDAKRLEKITHIKEEWLQATIKTGSEHGTGGIVTKLKAAKFLLEHNKKMFLASGFDLS 233 (251)
T ss_dssp TCSEEEEEESSCSCBSSCTTTCTTCCBCCEESCCCGGGC---------CBSCHHHHHHHHHHHHHHTTCEEEEEESSSCH
T ss_pred CCCEEEEEeCCCceeeCCCCCCCCCeEeeEeccchHHHHHHhcccCCCCccCchHHHHHHHHHHHHCCCeEEEEeCCChh
Confidence 9999999999999999999999999999999987 6543 367999999999999999999999999999
Q ss_pred hHHH--HHcCCccceEEE
Q psy13351 632 ALKR--VIEGKNEGTLVY 647 (837)
Q Consensus 632 ~i~~--al~Ge~~GT~I~ 647 (837)
++.+ ++.|+.+||+|.
T Consensus 234 ~l~~~~~~~g~~~GT~i~ 251 (251)
T 2ako_A 234 VAKTFLLEDKQIGGTLFE 251 (251)
T ss_dssp HHHHHHHSCCCCSSEEEC
T ss_pred hhhhhHHhcCCCCceEeC
Confidence 9999 999999999983
No 38
>2ap9_A NAG kinase, acetylglutamate kinase, AGK; structural genomics, protein structure initiative, NYSGXRC, PSI; 2.80A {Mycobacterium tuberculosis} SCOP: c.73.1.2
Probab=99.95 E-value=9.6e-28 Score=259.95 Aligned_cols=224 Identities=17% Similarity=0.206 Sum_probs=180.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc-------CCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ-------NIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~-------~~~~~~~~ 484 (837)
+++|+|. +|++ +. +++.++.++++|+.+.+.|+++|||||||+....... ... ..++.+++
T Consensus 26 k~iViKl--GGs~-l~------~~~~~~~~~~~i~~l~~~G~~vViVhGgG~~i~~~~~~~~~~~~~~~g~R~t~~~~l~ 96 (299)
T 2ap9_A 26 KVVVVKY--GGNA-MT------DDTLRRAFAADMAFLRNCGIHPVVVHGGGPQITAMLRRLGIEGDFKGGFRVTTPEVLD 96 (299)
T ss_dssp CEEEEEE--CTHH-HH------SHHHHHHHHHHHHHHHTTTCEEEEEECCSHHHHHHHHHHTCCCCCSSSSCCBCHHHHH
T ss_pred CeEEEEE--Cchh-hC------CchHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCcccccCCcccCCHHHHH
Confidence 3578884 4444 32 2357888999999999999999999999854332211 111 12456778
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhh---------------------hccchHHHHHHHhCCCEEEEeC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFL---------------------ESYIPLNAIKYLEEGKVVIFAG 543 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~---------------------~~~~~~~i~~ll~~g~VPVv~G 543 (837)
.+++++++..+..++..|..+|++++++++.+.+.+. ..++.+.+..+|+.|.|||++|
T Consensus 97 ~~~~~~~G~l~~~l~~~L~~~g~~av~lt~~d~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVv~~ 176 (299)
T 2ap9_A 97 VARMVLFGQVGRELVNLINAHGPYAVGITGEDAQLFTAVRRSVTVDGVATDIGLVGDVDQVNTAAMLDLVAAGRIPVVST 176 (299)
T ss_dssp HHHHHHHHTHHHHHHHHHTTSSSCEEEEETTGGGCEEEEECCBCSSSCCBCCBSEEEEEEECHHHHHHHHHTTCEEEEES
T ss_pred HHHHHHhhHHHHHHHHHHHhCCCCceEechhHCCEEEEEecccccccccCCCCcceeEEEecHHHHHHHHhCCCeEEECC
Confidence 8888888877777899999999999999998853221 1146889999999999999998
Q ss_pred C----CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hccccchHHHHH
Q psy13351 544 G----IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAFS 613 (837)
Q Consensus 544 ~----~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~~v~~~~Aa~ 613 (837)
+ .|.. ++++|++|+.+|.+|+||+|+|||||||||++||+ ++++|++++++|+.+ .|+|.+|+.|+.
T Consensus 177 v~~~~~G~~~~l~~D~~Aa~lA~~l~Ad~liilTDVdGV~~~dP~---~~~~i~~is~~e~~~l~~~~~ggM~~Kl~aa~ 253 (299)
T 2ap9_A 177 LAPDADGVVHNINADTAAAAVAEALGAEKLLMLTDIDGLYTRWPD---RDSLVSEIDTGTLAQLLPTLELGMVPKVEACL 253 (299)
T ss_dssp EEECTTCCEEEECHHHHHHHHHHHTTCSEEEEEESSSSEETTTTC---TTCEESEEEHHHHHHHGGGSCTTTHHHHHHHH
T ss_pred eeECCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCChhhhcCCCC---CCcChhhcCHHHHHHHHHhhcCchHHHHHHHH
Confidence 3 2222 24799999999999999999999999999999997 478999999998876 478999999999
Q ss_pred HHHhCCCC-EEEEEccCcchH-HHHHcCCccceEEEEee
Q psy13351 614 FCRDQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 614 ~a~~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~~ 650 (837)
.|.++|++ ++|+||..|+++ .+++.|+.+||+|.+++
T Consensus 254 ~a~~~gv~~v~I~~g~~p~~ll~~l~~~~~~GT~i~~~~ 292 (299)
T 2ap9_A 254 RAVIGGVPSAHIIDGRVTHCVLVELFTDAGTGTKVVRGE 292 (299)
T ss_dssp HHHHHTCSEEEEEETTSTTHHHHHHHSCCCCSEEEECCC
T ss_pred HHHHcCCCEEEEecCCCCcHHHHHHhcCCCCcEEEecCC
Confidence 99999998 999999999986 78999999999998764
No 39
>2v5h_A Acetylglutamate kinase; amino-acid biosynthesis, transcription regulation, transfera cyanobacteria, transcription; HET: NLG; 2.75A {Synechococcus elongatus} PDB: 2jj4_A*
Probab=99.95 E-value=2.4e-27 Score=258.59 Aligned_cols=223 Identities=17% Similarity=0.156 Sum_probs=180.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~ 484 (837)
+++|+|+ +|++ +.+ ++.+..++++|+.+.+.|+++|||||||+....... ... + .++.+++
T Consensus 50 k~iVIKl--GGs~-l~~------~~~~~~l~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~Rvt~~~~l~ 120 (321)
T 2v5h_A 50 RTVVVKY--GGAA-MKQ------EELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTME 120 (321)
T ss_dssp CEEEEEE--CTHH-HHS------HHHHHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCBSSSSBCBCHHHHH
T ss_pred CeEEEEE--Cchh-hCC------chHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHcCCCccccCCcccCCHHHHH
Confidence 3578884 4443 322 467889999999999999999999999855432222 111 1 2457788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeC----CC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAG----GI 545 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------~~~~~~~~i~~ll~~g~VPVv~G----~~ 545 (837)
.++++++|..+..++..|..+|++++++++.+...+ +..++.+.+..+|+.|.|||+++ ..
T Consensus 121 ~~~~~~~G~in~~l~~~L~~~g~~a~gl~~~~a~~l~a~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~IpVi~~v~~~~~ 200 (321)
T 2v5h_A 121 VVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADEN 200 (321)
T ss_dssp HHHHHHHHTHHHHHHHHHHHHTCCEEEECTTGGGSEEEEECSSCSSBSBEEEEEECGGGTHHHHHTTCEEEEESEEECTT
T ss_pred HHHHHHhChHHHHHHHHHHhCCCCeeeeChhhccEEEeecCCCccccccceeEEecHHHHHHHHHCCCeEEEeCceECCC
Confidence 888888888788899999999999999987754211 22356788999999999999996 22
Q ss_pred CCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHh
Q psy13351 546 GNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRD 617 (837)
Q Consensus 546 G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~ 617 (837)
|.. ++++|++|+++|.+|+||+|+|+|||||||++||+ ++++|++++++|+.+ .|+|.+|+.|+..|.+
T Consensus 201 G~~~~i~~D~~Aa~lA~~l~Ad~LiilTDVdGVy~~dp~---~a~~i~~is~~e~~~l~~~g~~~gGM~~Kl~Aa~~a~~ 277 (321)
T 2v5h_A 201 GQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKR---PESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLA 277 (321)
T ss_dssp SCEEECCHHHHHHHHHHHTTCSEEEEEESSSSCBSSTTC---TTCBCCEEEHHHHHHHHHTTSSCTTHHHHHHHHHHHHH
T ss_pred CCEEEeCHHHHHHHHHHHcCCCEEEEeeCCCceEcCCCC---CCeeeeEEcHHHHHHHHhCCCCcCcHHHHHHHHHHHHH
Confidence 333 35899999999999999999999999999999997 589999999988766 3679999999999999
Q ss_pred CCCC-EEEEEccCcchH-HHHHcCCccceEEEEe
Q psy13351 618 QKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEI 649 (837)
Q Consensus 618 ~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~ 649 (837)
+|++ ++|+||..|+.+ .+++.|+..||+|.++
T Consensus 278 ~gv~~v~I~~g~~~~~ll~~l~~~~~~GT~I~~~ 311 (321)
T 2v5h_A 278 QGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 311 (321)
T ss_dssp TTCSEEEEEETTSTTHHHHHHHCCCCSEEEEECC
T ss_pred cCCCEEEEEeCCCCchHHHHHhcCCCCceEEECC
Confidence 9998 999999999988 7889998899999875
No 40
>2ogx_A Molybdenum storage protein subunit alpha; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.94 E-value=3.7e-27 Score=252.00 Aligned_cols=216 Identities=19% Similarity=0.201 Sum_probs=170.2
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc--cccCCCcchHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 493 (837)
++|+| .|+++. ++. .+.+.+++++|+.+. .|+++|||||||..++.+.. ...+++...++.+++.+...
T Consensus 41 ~iVIK---iGGsl~-~~~----~~~l~~l~~~I~~l~-~G~~vVlV~GGg~~~~~~~~~~~~~gl~~~~l~~v~~~~~~~ 111 (276)
T 2ogx_A 41 LQVVK---IGGRVM-DRG----ADAILPLVEELRKLL-PEHRLLILTGAGVRARHVFSVGLDLGLPVGSLAPLAASEAGQ 111 (276)
T ss_dssp EEEEE---ECHHHH-TTT----HHHHHHHHHHHHHHT-TTCEEEEEECCTHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eEEEE---EChhhc-CCC----HHHHHHHHHHHHHHh-CCCeEEEEECcHHHHHHHHhccCcCCCCHHHHHHHHHHHHHH
Confidence 67899 455544 322 678999999999998 79999999999865554333 23456667778888776666
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC----------CCCCcchHHHHHHHHHc
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG----------NPFFTTDTTAALRAAEI 563 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G----------~~~~s~D~lAa~lA~~L 563 (837)
+..+++..+...|++.+.+ ..+.+.+..+|+.|.|||++|+.+ .+++++|++|+++|.+|
T Consensus 112 n~~l~~~ll~~~g~~~v~~----------~~~~~~i~~lL~~g~IpVi~~~~~~~~~e~~G~~~~~~~~D~~Aa~lA~~l 181 (276)
T 2ogx_A 112 NGHILAAMLASEGVSYVEH----------PTVADQLAIHLSATRAVVGSAFPPYHHHEFPGSRIPPHRADTGAFLLADAF 181 (276)
T ss_dssp HHHHHHHHHGGGTCCBCCH----------HHHHHHHHHHHHHSSEEEEESSCTTGGGCCSSSSSCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCcccc----------cChHHHHHHHHhCCCEEEEcCCcccccccccCCcCCCCChHHHHHHHHHHc
Confidence 6666666666888875432 124677899999999999999421 25678999999999999
Q ss_pred CCcEEEEeeccCccccCCCC--CCCCceeccccCHHHHHHh-ccccchHHHHHHHH--hCCCCEEEEEccCcchHHHHHc
Q psy13351 564 KAEIILKATKVDGIYNSDPN--KCLSAIIYKKITFDEVISK-KLEIMDSTAFSFCR--DQKLPIRVFSIIKSGALKRVIE 638 (837)
Q Consensus 564 ~Ad~liilTDVdGVy~~dP~--~~~~a~~I~~is~~e~~~~-G~~v~~~~Aa~~a~--~~gi~v~I~ng~~~~~i~~al~ 638 (837)
+||+|+++|||||||++||+ .+|++++|++++++|+.+. |..++++.+...+. +.|++++|+||..|+++.+++.
T Consensus 182 ~Ad~LiilTDVdGvy~~dP~~~~~~~a~~i~~i~~~e~~~~~g~ggM~~K~~~~~~~~~~~~~v~I~~g~~~~~l~~~l~ 261 (276)
T 2ogx_A 182 GAAGLTIVENVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNGLVPGRLTAALR 261 (276)
T ss_dssp TCSEEEEEESSSSEESSCTTSTTGGGCCEESEEEHHHHHTSCSCCSSCHHHHHHHHTCSSCCEEEEEETTSTTHHHHHHT
T ss_pred CCCEEEEEeCCCccCCCCCCccCCCCCeEcceeCHHHHHHHhCcCChHHHHHHHHHHhcCCCeEEEEECCCccHHHHHHc
Confidence 99999999999999999998 8899999999999998874 34445555555555 6688999999999999999999
Q ss_pred CCccceEEEEee
Q psy13351 639 GKNEGTLVYEIY 650 (837)
Q Consensus 639 Ge~~GT~I~~~~ 650 (837)
|+.+||+|.+++
T Consensus 262 g~~~GT~i~~~~ 273 (276)
T 2ogx_A 262 GEHVGTLIRTGV 273 (276)
T ss_dssp TCCCSEEEECSC
T ss_pred CCCCceEEccCC
Confidence 999999998753
No 41
>3lf9_A 4E10_D0_1IS1A_001_C (T161); epitope-scaffold, immune system; 2.00A {Artificial gene}
Probab=99.94 E-value=9.8e-27 Score=206.69 Aligned_cols=112 Identities=38% Similarity=0.586 Sum_probs=107.8
Q ss_pred hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHH
Q psy13351 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKA 733 (837)
Q Consensus 654 ~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~ka 733 (837)
+++|.++++.+|+++++.|+.+++++||||
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------------------------------- 31 (121)
T 3lf9_A 2 INEIKKDAQERMDKSVEALKNNLSKVRTGG-------------------------------------------------- 31 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSS--------------------------------------------------
T ss_pred chHHHhhHHHHHHHHHHHHHHhhHhhcCCC--------------------------------------------------
Confidence 467888999999999999999999999985
Q ss_pred HHhcCCCccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHH
Q psy13351 734 INEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQ 813 (837)
Q Consensus 734 I~~s~l~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq 813 (837)
|||+|||++|+|.|++++|++|++||||||++++.+|++.|++.+|||+.++++++||
T Consensus 32 ----------------------plTEERRKeLVK~akk~aEeaKVAIRNIRRDAnd~lKKl~KdkeISEDe~kr~e~eIQ 89 (121)
T 3lf9_A 32 ----------------------GGTEERRKDLVKIVRGEAEGGRVAVRNIARDAANDLAALGKDKEVNWFDISQALWEIQ 89 (121)
T ss_dssp ----------------------BCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCHHHHHHHHHHHH
T ss_pred ----------------------CCCHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHhHHHHHH
Confidence 6899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhcC
Q psy13351 814 KLTDKFILEINQLLINKEKEILTL 837 (837)
Q Consensus 814 ~l~~~~~~~id~~~~~kekei~~~ 837 (837)
++||+|+++||++++.||||||.|
T Consensus 90 KLTDkyIkkID~ll~~KEKEI~~~ 113 (121)
T 3lf9_A 90 KLTDVAVKKIDEVLAAKEKELMEV 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986
No 42
>3d40_A FOMA protein; fosfomycin, antibiotic resistance, kinase, phosphoryl transfer, transferase; 1.53A {Streptomyces wedmorensis} PDB: 3d41_A* 3qun_A* 3quo_A* 3qur_A* 3qvf_A* 3qvh_A*
Probab=99.94 E-value=1.2e-27 Score=257.01 Aligned_cols=244 Identities=11% Similarity=0.099 Sum_probs=176.5
Q ss_pred hhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhccC-CCccccccchhhhhhhhHHhhhcCc-eEEEEeCcchh
Q psy13351 390 MHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKG-DAYNINSSIIKNIISEISEIVSCGI-ELAIVIGGGNI 467 (837)
Q Consensus 390 mhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~g-~~~~i~~~~i~~la~~I~~l~~~G~-~vVIVhGGG~~ 467 (837)
-|-.+.-|+|+.+ .++++|+|+ +|+++... .+..++.+.+++++++|+.+.+.|+ ++|||||||..
T Consensus 9 ~~~~~~~~~~~~~----------~~~~iVIKl--GGs~l~~~~~~~~~~~~~l~~la~~Ia~l~~~G~~~vViVhGgG~~ 76 (286)
T 3d40_A 9 HHSSGLVPRGSHM----------TPDFLAIKV--GGSLFSRKDEPGSLDDDAVTRFARNFARLAETYRGRMVLISGGGAF 76 (286)
T ss_dssp ---CCCCCCSTTS----------CCSEEEEEE--CGGGTBCTTSTTCBCHHHHHHHHHHHHHHHHHTTTSEEEEECCCCC
T ss_pred ccccccchhhhcc----------CCCEEEEEe--CchHhCCCcccccchHHHHHHHHHHHHHHHHcCCCeEEEEECCHHH
Confidence 3556666777774 234679995 55554432 2567899999999999999999998 69999999976
Q ss_pred hhcccccccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh---hhhccchHHHHHHHhCCCEEEEeCC
Q psy13351 468 CRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEK---FLESYIPLNAIKYLEEGKVVIFAGG 544 (837)
Q Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~---~~~~~~~~~i~~ll~~g~VPVv~G~ 544 (837)
.+.+.... +.++...+....+..+.....+..+|..+|++++.+++.+... -...++.+.+..+|+.|.|||++|+
T Consensus 77 ~~~~l~~~-~~~~~~~~~~~~vt~g~l~~~l~~~l~~~G~~a~~l~~~~~~~t~dg~~~~~~~~i~~lL~~g~IpVi~gd 155 (286)
T 3d40_A 77 GHGAIRDH-DSTHAFSLAGLTEATFEVKKRWAEKLRGIGVDAFPLQLAAMCTLRNGIPQLRSEVLRDVLDHGALPVLAGD 155 (286)
T ss_dssp -------------CCTTHHHHHHHHHHHHHHHHHHHHTTCCEEECCGGGTEEEETTEEEECCSHHHHHHHTTCEEEEECE
T ss_pred HHHHHHHc-CCCcccchhcchhhHHHHHHHHHHHHHHcCCcEEEEEeecCCcccCCeEEehHHHHHHHHHCcCEEEEcCC
Confidence 66543321 2211111112222334445677888999999999887765421 0344567789999999999999983
Q ss_pred CC-----C-CCCcchHHHHHHHHH-cCCcEEEEeeccCccccCCCCCCCCceeccccCHHH---HHH----------hcc
Q psy13351 545 IG-----N-PFFTTDTTAALRAAE-IKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE---VIS----------KKL 604 (837)
Q Consensus 545 ~G-----~-~~~s~D~lAa~lA~~-L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e---~~~----------~G~ 604 (837)
.+ . .++++|++|+++|.+ |+||+|+|+|||||||++||+ ++++|+++++.| +.+ .|+
T Consensus 156 ~~~~~~g~~~~~~~D~~Aa~lA~~~l~Ad~LiilTDVdGVy~~dP~---~a~~i~~is~~e~~~l~~~~~~~~~~~~tgg 232 (286)
T 3d40_A 156 ALFDEHGKLWAFSSDRVPEVLLPMVEGRLRVVTLTDVDGIVTDGAG---GDTILPEVDARSPEQAYAALWGSSEWDATGA 232 (286)
T ss_dssp EEEBTTSCEEEECGGGHHHHTTTTCCSCEEEEEEESSSSCEECC------CEECCEEETTSCHHHHHHHHHSCC----CH
T ss_pred eEEcCCCCEEeeCHHHHHHHHHHhhCCCCEEEEecCCCeeEcCCCC---CCcCCcccCHHHHHHHHHhhccccCCcccCc
Confidence 32 1 236799999999999 999999999999999999998 899999998754 322 278
Q ss_pred ccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcC-----Ccc-ceEEEEe
Q psy13351 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEG-----KNE-GTLVYEI 649 (837)
Q Consensus 605 ~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~G-----e~~-GT~I~~~ 649 (837)
|.+|+.|+..|.++|++++|+||..|+++.+++.+ +++ ||.|...
T Consensus 233 M~~Kl~Aa~~a~~~gv~v~I~~g~~p~~l~~l~t~~~~~~~~~~~t~i~~~ 283 (286)
T 3d40_A 233 MHTKLDALVTCARRGAECFIMRGDPGSDLEFLTAPFSSWPAHVRSTRITTT 283 (286)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEECCTTCCCGGGGSCGGGSCTTCCCEEEEC-
T ss_pred HHHHHHHHHHHHHCCCcEEEEeCCCCCcHHHHhcCcccCcccccceeeeec
Confidence 88999999999999999999999999999999999 886 9999753
No 43
>2ogx_B Molybdenum storage protein subunit beta; open alpha/beta structure, metal binding protein; HET: ATP; 1.60A {Azotobacter vinelandii}
Probab=99.94 E-value=2.8e-26 Score=244.62 Aligned_cols=214 Identities=21% Similarity=0.272 Sum_probs=167.2
Q ss_pred HHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc--cccCCCcchHHHHHHHHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRSTADYMGMLATII 493 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 493 (837)
.+|+|+ +|++ +.++. .+.+.+++++|+.+.+. +++|||||||..++.+.. ...+++...++...+.+.++
T Consensus 38 ~iVIKl--GGs~-l~~~~----~~~~~~la~~I~~l~~~-~~vVlVhGGg~~~~~~~~~~~~~g~~~~~~~~~~~~a~G~ 109 (270)
T 2ogx_B 38 ATVIKI--GGQS-VIDRG----RAAVYPLVDEIVAARKN-HKLLIGTGAGTRARHLYSIAAGLGLPAGVLAQLGSSVADQ 109 (270)
T ss_dssp EEEEEE--CTTT-TGGGC----HHHHHHHHHHHHHHTTT-CEEEEEECCCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred eEEEEe--chHH-hCCCC----HHHHHHHHHHHHHHhcC-CcEEEEECChHHHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 568884 4444 33321 57899999999999876 999999999976544322 12355666677888888888
Q ss_pred HHHHHHHHHHHcCCceeEeehhchhhhhhccchHHHHHHHhCCCEEEEeCCCC------------CCCCcchHHHHHHHH
Q psy13351 494 NSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIG------------NPFFTTDTTAALRAA 561 (837)
Q Consensus 494 ~~~ll~~~L~~~gi~a~~l~~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G------------~~~~s~D~lAa~lA~ 561 (837)
++.++...|..+|++.+ ...+...+..+++.|.|||++|+.| ++++++|++|+++|.
T Consensus 110 ~~l~~~~~l~~~G~~~v-----------t~~d~~~i~~lL~~g~ipVi~g~~g~~~~~~~~~~g~~~~~~~D~~Aa~lA~ 178 (270)
T 2ogx_B 110 NAAMLGQLLAKHGIPVV-----------GGAGLSAVPLSLAEVNAVVFSGMPPYKLWMRPAAEGVIPPYRTDAGCFLLAE 178 (270)
T ss_dssp HHHHHHHHHGGGTCCBC-----------CSSTTCHHHHHCTTCCEEEEECSCTTGGGCCCCSSSSSCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCcee-----------cHhhHHHHHHHHhCCCEEEEeCCccccccccccccccCCCCCcHHHHHHHHH
Confidence 88888777888888721 2234456899999999999998643 345789999999999
Q ss_pred HcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHHh--ccccchHHHHHHHHh--CCCCEEEEEccCcchHHHHH
Q psy13351 562 EIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK--KLEIMDSTAFSFCRD--QKLPIRVFSIIKSGALKRVI 637 (837)
Q Consensus 562 ~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~~--G~~v~~~~Aa~~a~~--~gi~v~I~ng~~~~~i~~al 637 (837)
+|+||+|+++|||||||++||+.+|++++|++++++|+.+. ++.+++..+...+.. .+++++|+|+..|+++.+++
T Consensus 179 ~l~Ad~Li~lTDVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~g~~~~ggm~~kl~aa~~~~~v~I~~g~~~~~l~~~l 258 (270)
T 2ogx_B 179 QFGCKQMIFVKDEDGLYTANPKTSKDATFIPRISVDEMKAKGLHDSILEFPVLDLLQSAQHVREVQVVNGLVPGNLTRAL 258 (270)
T ss_dssp HHTCSEEEEEESSSSEESSCSSSCTTCCEESEEEHHHHHHTTCCCTTSCHHHHHHHHHCSSCCEEEEEETTSTTHHHHHH
T ss_pred hcCCCEEEEEeCCCcccCCCCCCCCCCeEcceeCHHHHHHHhcCCCcccHHHHHHHHHhhcCCcEEEEeCCCchHHHHHH
Confidence 99999999999999999999999999999999999988772 222444444433333 56799999999999999999
Q ss_pred cCCccceEEEE
Q psy13351 638 EGKNEGTLVYE 648 (837)
Q Consensus 638 ~Ge~~GT~I~~ 648 (837)
.|+.+||+|.+
T Consensus 259 ~g~~~GT~i~~ 269 (270)
T 2ogx_B 259 AGEHVGTIITA 269 (270)
T ss_dssp TTCCCSEEEEC
T ss_pred cCCCCCeEecC
Confidence 99999999975
No 44
>2bty_A Acetylglutamate kinase; N-acetyl-L-glutamate kinase, amino acid kinase, phosphoryl group transfer, arginine metabolism, transferase; HET: ARG NLG; 2.75A {Thermotoga maritima} SCOP: c.73.1.2
Probab=99.94 E-value=1.6e-26 Score=248.51 Aligned_cols=220 Identities=20% Similarity=0.160 Sum_probs=176.6
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---cc-------cCCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KI-------QNIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~-------~~~~~~~~~ 484 (837)
+++|+|. +|+++ .+ ++.+.+++++|+.+.+.|+++|||||||+....... .. +..++.+++
T Consensus 22 ~~iViKl--GGs~l-~~------~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~~~~~~~~~g~r~t~~~~l~ 92 (282)
T 2bty_A 22 KTFVIKF--GGSAM-KQ------ENAKKAFIQDIILLKYTGIKPIIVHGGGPAISQMMKDLGIEPVFKNGHRVTDEKTME 92 (282)
T ss_dssp CEEEEEE--CSHHH-HS------HHHHHHHHHHHHHHHHTTCEEEEEECCSHHHHHHHHHHTCCCCBSSSSBCBCHHHHH
T ss_pred CeEEEEE--Cchhh-CC------hhHHHHHHHHHHHHHHCCCcEEEEECCcHHHHHHHHHcCCCccccCCcccCCHHHHH
Confidence 4578884 44443 22 457889999999999999999999999854432211 11 112467788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh----------------hhccchHHHHHHHhCCCEEEEeCC----
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF----------------LESYIPLNAIKYLEEGKVVIFAGG---- 544 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~----------------~~~~~~~~i~~ll~~g~VPVv~G~---- 544 (837)
.++++++|..+..++..|..+|++++++++.+...+ +..++.+.+..+|+.|.|||++|+
T Consensus 93 ~~~~~~~G~~~~~l~~~l~~~g~~a~~l~~~~~~~l~~~~~~~~~d~g~~g~v~~~~~~~i~~ll~~g~IpVi~~v~~~~ 172 (282)
T 2bty_A 93 IVEMVLVGKINKEIVMNLNLHGGRAVGICGKDSKLIVAEKETKHGDIGYVGKVKKVNPEILHALIENDYIPVIAPVGIGE 172 (282)
T ss_dssp HHHHHHHHTHHHHHHHHHHTTTCCEEEEETTGGGSEEEEECCTTCCCBSBEEEEEECTHHHHHHHHTTCEEEEESEEECS
T ss_pred HHHHHHhhHHHHHHHHHHHhCCCCceecChhhCCEEEEecCCcccCCCcceEEEEecHHHHHHHHHCCCEEEECCCccCC
Confidence 888888777778899999999999999988754211 224578899999999999999983
Q ss_pred CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHH
Q psy13351 545 IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCR 616 (837)
Q Consensus 545 ~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~ 616 (837)
.|.. ++++|++|+++|.+|+||+|+++|||||||++ | ++|++++++|+.+ .|+|.+|+.|+..|.
T Consensus 173 ~G~~~~~~~D~~Aa~lA~~l~Ad~liilTDVdGvy~~-----~--~~i~~i~~~e~~~~~~~g~~~gGM~~K~~aa~~a~ 245 (282)
T 2bty_A 173 DGHSYNINADTAAAEIAKSLMAEKLILLTDVDGVLKD-----G--KLISTLTPDEAEELIRDGTVTGGMIPKVECAVSAV 245 (282)
T ss_dssp SSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCEET-----T--EECCEECHHHHHHHHTTTCSCTTHHHHHHHHHHHH
T ss_pred CCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeecC-----c--hhhhhCCHHHHHHHHHcCCCCCcHHHHHHHHHHHH
Confidence 2322 25899999999999999999999999999997 3 8999999998866 366999999999999
Q ss_pred hCCCC-EEEEEccCcchH-HHHHcCCccceEEEEee
Q psy13351 617 DQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEIY 650 (837)
Q Consensus 617 ~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~~ 650 (837)
++|++ ++|+||..|+.+ .+++.|+..||+|.++|
T Consensus 246 ~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~~ 281 (282)
T 2bty_A 246 RGGVGAVHIINGGLEHAILLEIFSRKGIGTMIKELE 281 (282)
T ss_dssp HTTCSCEEEEETTSTTHHHHHHSSSSCSSEEECCCC
T ss_pred HhCCCeEEEecCCCCchHHHHHhcCCCCceEEEeCC
Confidence 99998 999999999998 78888988999998753
No 45
>3k4o_A Isopentenyl phosphate kinase; small molecule kinase, ATP-binding, transferase, methanocald jannaschii, isopentenyl monophosphate; 2.05A {Methanocaldococcus jannaschii} PDB: 3k4y_A* 3k52_A* 3k56_A*
Probab=99.93 E-value=6.9e-27 Score=248.31 Aligned_cols=222 Identities=21% Similarity=0.193 Sum_probs=166.8
Q ss_pred HHHHHhhhhhhhccC--CCccccccchhhhhhhhHHhhhcC------ceEEEEeCcchhhhcccccccCCCcc---hHHH
Q psy13351 417 AVLKAQQLGEALMKG--DAYNINSSIIKNIISEISEIVSCG------IELAIVIGGGNICRGISNKIQNIDRS---TADY 485 (837)
Q Consensus 417 ~v~k~~~~gs~~~~g--~~~~i~~~~i~~la~~I~~l~~~G------~~vVIVhGGG~~~~~~~~~~~~~~~~---~~~~ 485 (837)
+|+| .|++.+++ .+..++++.+++++++|+.+...| .++|||||||+.+.++.... ++++. +.+.
T Consensus 9 iVIK---lGGs~l~~~~~~~~~~~~~l~~la~~i~~l~~~G~~~~~~~~vVlVhGGG~~~~~~~~~l-gi~~~~~~~~~~ 84 (266)
T 3k4o_A 9 TILK---LGGSILSDKNVPYSIKWDNLERIAMEIKNALDYYKNQNKEIKLILVHGGGAFGHPVAKKY-LKIEDGKKIFIN 84 (266)
T ss_dssp EEEE---ECTTSSCCTTSTTCCCHHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECCHHHHHHHHGGG-EEECSSSEEECC
T ss_pred EEEE---EchHHeeCCCccCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEeCchHHHHHHHHHc-CCCcccCccccc
Confidence 4778 45555554 367899999999999999998888 99999999997766532221 22111 0110
Q ss_pred --HHHHHHH----HHHHHHHHHHHHcCCceeEeehhchhhhh--hccchHHHHHHHhCCCEEEEeCCCC------CCCCc
Q psy13351 486 --MGMLATI----INSLALFDILNKSGIISHVMSAISIEKFL--ESYIPLNAIKYLEEGKVVIFAGGIG------NPFFT 551 (837)
Q Consensus 486 --~~~~~~~----~~~~ll~~~L~~~gi~a~~l~~~~~~~~~--~~~~~~~i~~ll~~g~VPVv~G~~G------~~~~s 551 (837)
.++..+. ..+..++++|..+|++++++++.++.... ..++.+.+..+|+.|.|||++|+.+ ..+++
T Consensus 85 ~~~G~r~T~~a~~~ln~~l~~~l~~~G~~a~~l~~~d~~~~~~g~~v~~~~i~~lL~~g~ipVi~~~~~~~~~g~~~~~~ 164 (266)
T 3k4o_A 85 MEKGFWEIQRAMRRFNNIIIDTLQSYDIPAVSIQPSSFVVFGDKLIFDTSAIKEMLKRNLVPVIHGDIVIDDKNGYRIIS 164 (266)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTTCCEEEECGGGTCEESSSCBCCCHHHHHHHHTTCEEEEECEEEEESSSCEEEEC
T ss_pred ccCceeHHHHHHHHHHHHHHHHHHHCCCcEEEeeHHHcCcccCceEecHHHHHHHHHCCCEEEEeCCEEEcCCCCeeeeC
Confidence 2222222 23344788899999999999998875333 5678899999999999999998322 23467
Q ss_pred chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH----------hccccchHHHHHHHHhCCCC
Q psy13351 552 TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS----------KKLEIMDSTAFSFCRDQKLP 621 (837)
Q Consensus 552 ~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~----------~G~~v~~~~Aa~~a~~~gi~ 621 (837)
+|++|+++|.+|+||+|+++||||||| .||+..|++.. -.++++.+ .|+|.+|+.|+..+.+ +
T Consensus 165 ~D~~Aa~lA~~l~Ad~li~ltdvdGv~-~d~~~i~~~~~---~e~~~l~~~~~~~~~~~~tGGM~~Kv~aa~~a~~---~ 237 (266)
T 3k4o_A 165 GDDIVPYLANELKADLILYATDVDGVL-IDNKPIKRIDK---NNIYKILNYLSGSNSIDVTGGMKYKIEMIRKNKC---R 237 (266)
T ss_dssp HHHHHHHHHHHHTCSEEEEEESSSSSB-SSSSBCSEECT---TTHHHHHHHHHSTTCSCCSSHHHHHHHHHHHTTC---E
T ss_pred HHHHHHHHHHHcCCCEEEEEecCCeEE-eCCeecCcCCH---HHHHHHHHHhccccCCcccCCHHHHHHHHHHHhc---C
Confidence 999999999999999999999999999 88876554432 11233322 4679999999877766 9
Q ss_pred EEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 622 IRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 622 v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|+||+.|+.|.+++.|+.+||+|.|.
T Consensus 238 v~I~~g~~~~~l~~~l~g~~~GT~i~~~ 265 (266)
T 3k4o_A 238 GFVFNGNKANNIYKALLGEVEGTEIDFS 265 (266)
T ss_dssp EEEEETTSTTHHHHHHTTCCCSEEEECC
T ss_pred EEEEeCCCccHHHHHhCCCCCceEEEeC
Confidence 9999999999999999999999999874
No 46
>2egx_A Putative acetylglutamate kinase; struc genomics, NPPSFA, national project on protein structural AN functional analyses; 1.92A {Thermus thermophilus} PDB: 3u6u_A
Probab=99.93 E-value=4.1e-26 Score=243.45 Aligned_cols=203 Identities=17% Similarity=0.161 Sum_probs=158.6
Q ss_pred chhhhhhhhHHhhhcCceEEEEeCcchhhh---cccccc------------cCCCcchHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 440 IIKNIISEISEIVSCGIELAIVIGGGNICR---GISNKI------------QNIDRSTADYMGMLATIINSLALFDILNK 504 (837)
Q Consensus 440 ~i~~la~~I~~l~~~G~~vVIVhGGG~~~~---~~~~~~------------~~~~~~~~~~~~~~~~~~~~~ll~~~L~~ 504 (837)
.+++++++|+.+.+.|+++|||||||.... ...... +-.++..++...++..+..+..+...|..
T Consensus 13 ~~~~~~~~i~~l~~~G~~vViVhGgg~~~~~~~~~~~~~~~~~~~~~g~~~rvt~~~~l~~~~~~~~G~i~~~l~~~l~~ 92 (269)
T 2egx_A 13 NYEAVAKDAASLWKEGVKLLLVHGGSAETNKVAEALGHPPRFLTHPGGQVSRLTDRKTLEIFEMVYCGLVNKRLVELLQK 92 (269)
T ss_dssp CHHHHHHHHHHHHHHTCCEEEECCCHHHHHHHHHHTTCCCCC-------CCCCCCHHHHHHHHHHHHTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECChHHHHHHHHHcCCccccccccCCccCcCCCHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 788999999999989999999999985432 111111 01123344445555455567888899999
Q ss_pred cCCceeEeehhchhhh--------------------------hhccchHHHHHHHhCCCEEEEeC----CCCCC-CCcch
Q psy13351 505 SGIISHVMSAISIEKF--------------------------LESYIPLNAIKYLEEGKVVIFAG----GIGNP-FFTTD 553 (837)
Q Consensus 505 ~gi~a~~l~~~~~~~~--------------------------~~~~~~~~i~~ll~~g~VPVv~G----~~G~~-~~s~D 553 (837)
+|++++++++.+...+ +..++.+.+..+|+.|.|||+++ ..|.. .+++|
T Consensus 93 ~G~~a~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~D~g~~g~i~~v~~~~i~~ll~~g~ipVi~~v~~~~~g~~~~~~~D 172 (269)
T 2egx_A 93 EGANAIGLSGLDGRLFVGRRKTAVKYVENGKVKVHRGDYTGTVEEVNKALLDLLLQAGYLPVLTPPALSYENEAINTDGD 172 (269)
T ss_dssp TTCCEEEEETTGGGCEEECBC----------------CCEECCCEECHHHHHHHHHTTCEEEEECCEEETTSCEEEECHH
T ss_pred CCCCeEEeCCCCccceeeeecccccccccccccCCcCCCCCCceEECHHHHHHHHHCCCEEEEcCcEECCCCCEEEeCHH
Confidence 9999999998874311 12367889999999999999996 12222 35799
Q ss_pred HHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHH--H-----hccccchHHHHHHHHhCCC-CEEEE
Q psy13351 554 TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI--S-----KKLEIMDSTAFSFCRDQKL-PIRVF 625 (837)
Q Consensus 554 ~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~--~-----~G~~v~~~~Aa~~a~~~gi-~v~I~ 625 (837)
++|+++|.+|+||+|+++|||||||+ ||+ |++++|++++++|+. + .|+|.+|+.|+..|.++|+ +++|+
T Consensus 173 ~~Aa~lA~~l~Ad~li~lTdVdGv~~-dp~--~~a~~i~~i~~~e~~~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~I~ 249 (269)
T 2egx_A 173 QIAALLATLYGAEALVYLSNVPGLLA-RYP--DEASLVREIPVERIEDPEYLALAQGRMKRKVMGAVEAVKGGVKRVVFA 249 (269)
T ss_dssp HHHHHHHHHHTCSEEEEEESSSSCBC---------CBCCEECHHHHHCHHHHTTSCHHHHHHHHHHHHHHHTTCSCEEEE
T ss_pred HHHHHHHHHcCCCEEEEEeCchhhhc-CCC--CCccccccCCHHHhhHHHhcCCCCCchHHHHHHHHHHHHcCCCeEEEE
Confidence 99999999999999999999999999 893 799999999999988 5 4789999999999999999 99999
Q ss_pred EccCcchHHHHHcCCccceEEE
Q psy13351 626 SIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 626 ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
||..|+++.++|.| .||+|.
T Consensus 250 ~g~~~~~l~~~l~g--~GT~i~ 269 (269)
T 2egx_A 250 DGRVENPIRRALSG--EGTVVR 269 (269)
T ss_dssp ESSSSSHHHHHHTT--CSEEEC
T ss_pred eCCCchHHHHHhCC--CCeEEC
Confidence 99999999999988 899984
No 47
>2e9y_A Carbamate kinase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=99.93 E-value=5.4e-26 Score=247.65 Aligned_cols=226 Identities=17% Similarity=0.152 Sum_probs=173.2
Q ss_pred HHHHHHHhhhhhhhcc-CCCcc--ccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---ccC-CCcchHHHHH
Q psy13351 415 SLAVLKAQQLGEALMK-GDAYN--INSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQN-IDRSTADYMG 487 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~-g~~~~--i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~~-~~~~~~~~~~ 487 (837)
+++|+|+ +|+++.. +.+.. .+.+.+++++++|+.+.+.|+++|||||||.....+... ... .++.+++..+
T Consensus 5 ~~iVIKl--GGs~l~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~~~~~~~~~~~t~~~~l~~~~ 82 (316)
T 2e9y_A 5 RLAVIAL--GGNAIAGPGMDVSVESQTAAVKRASSIIADVLADGWRSVITHGNGPQVGYLSEAFEALPPERPRQPLYIAT 82 (316)
T ss_dssp CEEEEEC--CHHHHSBTTTBCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHTSCTTSCCCCHHHHH
T ss_pred CEEEEEE--ChHHhcCCCCCcchhhHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHhHHHHHcCCCCCCCCHHHHHHHH
Confidence 3568884 4444431 22223 334789999999999999999999999998655432222 111 3567888888
Q ss_pred HHHHHHHH----HHHHHHHHHcCCce--------eEeehhchh---------h-------------h-------------
Q psy13351 488 MLATIINS----LALFDILNKSGIIS--------HVMSAISIE---------K-------------F------------- 520 (837)
Q Consensus 488 ~~~~~~~~----~ll~~~L~~~gi~a--------~~l~~~~~~---------~-------------~------------- 520 (837)
++++++.+ ..+...|...|+++ +.+++.+.. . .
T Consensus 83 ~~~~G~i~~~l~~~l~~~l~~~g~~a~~~~v~~qv~l~~~d~~f~~~~k~~g~~~~~~~a~~~~~~~g~~~~~~~g~g~r 162 (316)
T 2e9y_A 83 AMTQAWIGLLLKHSLEEELRRRGLNVLVPVVISRVLVDVSDPSFNNPSKPVGPIYGREEAEELSRRYGWVFKRDPRGGFR 162 (316)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCCCCEECCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSSEE
T ss_pred HHHHhHHHHHHHHHHHHHHHhcCCCccccceeeEEEeccccccccccccccccccchhhhhhhhhhcceeeeccccccce
Confidence 88877754 44556688899987 677766620 0 0
Q ss_pred --------hhccchHHHHHHHhCCCEEEEeCCCCCC--------------CCcchHHHHHHHHHcCCcEEEEeeccCccc
Q psy13351 521 --------LESYIPLNAIKYLEEGKVVIFAGGIGNP--------------FFTTDTTAALRAAEIKAEIILKATKVDGIY 578 (837)
Q Consensus 521 --------~~~~~~~~i~~ll~~g~VPVv~G~~G~~--------------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy 578 (837)
+..++.+.+..+|+.|.|||++|+.|.| ++++|++|+++|.+|+||+|+|+|||||||
T Consensus 163 ~vv~sp~~i~~v~~~~i~~lL~~g~IpI~~g~~g~pv~~~~~g~~~g~~~~id~D~~Aa~lA~~l~Ad~LiilTdVdGVy 242 (316)
T 2e9y_A 163 RVVPSPRPVSIVDRDLIAEASAESPAVVALGGGGVPVVERPGGVLEPVEAVVDKDLASSLLATQLNADLLVILTDVPGVA 242 (316)
T ss_dssp EEECCCCEEEETTHHHHHHHHHHCSEEEECGGGCEEEEECTTSCEEECSCCCCHHHHHHHHHHHTTCSEEEEEESSSSCE
T ss_pred ecccCCCcceeehHHHHHHHHHCCCEEEEECCCCCCeeECCCCCeecceeeeCHHHHHHHHHHHcCCCEEEEEeCchHhh
Confidence 1114778899999999999999766543 137999999999999999999999999999
Q ss_pred cCCCCCCCCceeccccCHHHHHHh--------ccccchHHHHHHHHhCCC-CEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 579 NSDPNKCLSAIIYKKITFDEVISK--------KLEIMDSTAFSFCRDQKL-PIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 579 ~~dP~~~~~a~~I~~is~~e~~~~--------G~~v~~~~Aa~~a~~~gi-~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
+ ||+ +|++++|++++++|+.+. |+|.+|+.||..+.++|+ +++|++ ++++.+++.| ..||+|.+
T Consensus 243 ~-dp~-~p~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~v~I~~---~~~l~~~l~g-~~GT~i~~ 315 (316)
T 2e9y_A 243 V-NYG-REGERWLRRAAASELKKYLREGHFPPGSMGPKVEAAISFVERTGKPAVIGS---LEEARQVLSL-QAGTVVML 315 (316)
T ss_dssp E-TTT-STTCEECSEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHHCSCEEEEE---STTHHHHHTT-SSSEEEEC
T ss_pred C-CCC-CCCCcCCcEEcHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEECc---HHHHHHHHcC-CCCeEEec
Confidence 9 784 789999999999888662 789999999988888898 899987 5668899998 78999975
No 48
>2we5_A Carbamate kinase 1; arginine catabolism, arginine metabolism, ATP synthesys, open alpha/beta sheet, phosphotransferase, transferase; HET: ADP; 1.39A {Enterococcus faecalis} PDB: 1b7b_A 2we4_A*
Probab=99.93 E-value=4.3e-26 Score=248.02 Aligned_cols=222 Identities=15% Similarity=0.089 Sum_probs=169.5
Q ss_pred HHHHHHhhhhhhhccCCCccccc----cchhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc--CCCcchHHHH
Q psy13351 416 LAVLKAQQLGEALMKGDAYNINS----SIIKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ--NIDRSTADYM 486 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~~~~i~~----~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~--~~~~~~~~~~ 486 (837)
++|+|+ +|++ +.+. ..+. +.+++++++|+.+.+.|+++|||||||.....+.. ... ..++.+++.+
T Consensus 4 ~iVIKl--GGs~-l~~~--~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~~~~~l~~~~~~~~~~~~~~~l~~~ 78 (310)
T 2we5_A 4 KMVVAL--GGNA-ILSN--DASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNGPQVGNLLLQQQAADSEKNPAMPLDTC 78 (310)
T ss_dssp EEEEEC--CGGG-GCCS--SCSHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHTCSSSSCCCCHHHH
T ss_pred EEEEEE--ChHH-hcCC--CCChHHHHHHHHHHHHHHHHHHHCCCeEEEEECCcHHHhHHHHHcCCCCCCCCCHHHHHHH
Confidence 467884 4444 4332 2332 78999999999999999999999999855443221 111 2366788999
Q ss_pred HHHHHHHHHHHHH----HHHHHcCCce------------------------eE--eehhchh------h-----------
Q psy13351 487 GMLATIINSLALF----DILNKSGIIS------------------------HV--MSAISIE------K----------- 519 (837)
Q Consensus 487 ~~~~~~~~~~ll~----~~L~~~gi~a------------------------~~--l~~~~~~------~----------- 519 (837)
.++++++.+..+. ..|...|++. ++ +++.+.. .
T Consensus 79 ~a~~~G~l~~~i~~al~~~l~~~g~~~~v~~~l~~~~v~~~d~~f~~~~~~vg~~~t~~da~~l~~~~~~~~~~~~~~~~ 158 (310)
T 2we5_A 79 VAMTQGSIGYWLSNALNQELNKAGIKKQVATVLTQVVVDPADEAFKNPTKPIGPFLTEAEAKEAMQAGAIFKEDAGRGWR 158 (310)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCHHHHSCCEEEEEEECHHHHHHHHTTTCCEEECTTSCEE
T ss_pred HHHhhhHHHHHHHHHHHHHHHhcCCchhhHhhhhhhcccccchhhcccCceeEEeccHHHHHHHHhccccccccCCccee
Confidence 8888888766555 4477777753 11 1222210 0
Q ss_pred -------hhhccchHHHHHHHhCCCEEEEeCCCCCCC-----------CcchHHHHHHHHHcCCcEEEEeeccCccccCC
Q psy13351 520 -------FLESYIPLNAIKYLEEGKVVIFAGGIGNPF-----------FTTDTTAALRAAEIKAEIILKATKVDGIYNSD 581 (837)
Q Consensus 520 -------~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~-----------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~d 581 (837)
.+..++.+.+..+|++|.|||++|+.|.|. +++|++|+++|.+|+||+|+++|||||||+ |
T Consensus 159 ~vv~sp~~i~~v~~~~i~~lL~~g~IpIi~Gg~Gipv~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~LiilTdVdGVy~-d 237 (310)
T 2we5_A 159 KVVPSPKPIDIHEAETINTLIKNDIITISCGGGGIPVVGQELKGVEAVIDKDFASEKLAELVDADALVILTGVDYVCI-N 237 (310)
T ss_dssp EEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEETTTTEECCCCCCHHHHHHHHHHHTTCSEEEEECSCSSCEE-S
T ss_pred eccCCcccceeehHHHHHHHHHCCCEEEEECCCCCCCcCCCCCCcEeecCHHHHHHHHHHHcCCCEEEEEeCchHhhC-C
Confidence 011157889999999999999998766443 669999999999999999999999999999 7
Q ss_pred CCCCCCceeccccCHHHHHHh--------ccccchHHHHHHHHhCCC--CEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 582 PNKCLSAIIYKKITFDEVISK--------KLEIMDSTAFSFCRDQKL--PIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 582 P~~~~~a~~I~~is~~e~~~~--------G~~v~~~~Aa~~a~~~gi--~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
| .+|++++|++++++|+.+. |+|.+|+.||..+.++|+ +++|++ ++++.+++.|+..||+|.
T Consensus 238 p-~~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~a~~~gv~~~v~I~~---~~~l~~~l~g~~~GT~i~ 309 (310)
T 2we5_A 238 Y-GKPDEKQLTNVTVAELEEYKQAGHFAPGSMLPKIEAAIQFVESQPNKQAIITS---LENLGSMSGDEIVGTVVT 309 (310)
T ss_dssp T-TSTTCEECCEEEHHHHHHHHHTTCSCTTTTHHHHHHHHHHHHHSTTCEEEEEC---SGGGGGCBTTBCCSEEEE
T ss_pred C-CCCCCeECCEEcHHHHHHHhhCCCCCCCChHHHHHHHHHHHHcCCCceEEECc---HHHHHHHHcCCCCCeEEe
Confidence 8 4789999999999888662 889999999999999898 899986 566888999988999996
No 49
>3ab4_A Aspartokinase; aspartate kinase, concerted inhibition, alternative initiati amino-acid biosynthesis, ATP-binding; HET: LYS; 2.47A {Corynebacterium glutamicum} PDB: 3aaw_A* 3ab2_A
Probab=99.93 E-value=2.9e-24 Score=243.25 Aligned_cols=279 Identities=20% Similarity=0.264 Sum_probs=197.3
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-chh---hhccccc-ccCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-GNI---CRGISNK-IQNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+.+.+++++++|+.+.+.|+++|||||| |.. ....... ....++..++.+..++...+..+++.+|..+|+++++
T Consensus 15 ~~~~i~~v~~~i~~l~~~g~~~vvV~sa~g~~~~~ll~~~~~~~~~~~~~~~d~~~a~Ge~~~~~ll~~~L~~~G~~a~~ 94 (421)
T 3ab4_A 15 SAERIRNVAERIVATKKAGNDVVVVCSAMGDTTDELLELAAAVNPVPPAREMDMLLTAGERISNALVAMAIESLGAEAQS 94 (421)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEECCSTTHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEE
Confidence 3578999999999998899999999985 432 2222111 1122344555555444455777899999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC---C----C---cchHHHHHHHHHcCCcEEEEee
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP---F----F---TTDTTAALRAAEIKAEIILKAT 572 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~---~----~---s~D~lAa~lA~~L~Ad~liilT 572 (837)
+++.+.... +...+.+.+..+|+.|.|||++|+.|.+ + + .+|++|+.+|.+|+||.|++||
T Consensus 95 l~~~~~~~~t~~~~~~~~v~~~~~~~i~~~l~~g~ipVv~g~~g~~~~~g~~~tlgrg~sD~~Aa~lA~~l~Ad~l~i~T 174 (421)
T 3ab4_A 95 FTGSQAGVLTTERHGNARIVDVTPGRVREALDEGKICIVAGFQGVNKETRDVTTLGRGGSDTTAVALAAALNADVCEIYS 174 (421)
T ss_dssp CCCC-----------------CCHHHHHHHHHTTCEEEC------------------CCHHHHHHHHHHHHTCSEEEEEE
T ss_pred EehhhceEEeccCCCCeeechhhHHHHHHHHhCCCEEEEeCCcCcCCCCCceEEeCCCCHHHHHHHHHHHCCCCEEEEEE
Confidence 998776321 2234678899999999999999986532 1 2 4899999999999999999999
Q ss_pred ccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 573 KVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 573 DVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
||||||++||+.+|++++|++++++|+.+ .|.+++|+.|+++|.++|+|++|.|+++| ..||+|.++
T Consensus 175 DVdGv~~~dPr~~~~a~~i~~is~~e~~el~~~Ga~v~~~~a~~~a~~~gi~v~I~n~~~~----------~~GT~I~~~ 244 (421)
T 3ab4_A 175 DVDGVYTADPRIVPNAQKLEKLSFEEMLELAAVGSKILVLRSVEYARAFNVPLRVRSSYSN----------DPGTLIAGS 244 (421)
T ss_dssp SCCSCBSSCTTTSTTCCBCSEECHHHHHHHHHTTCCSSCHHHHHHHHHTTCCEEEEESSSC----------CCCEEECSC
T ss_pred CCCccCcCCCCCCCCCeEccccCHHHHHHHHhcCCcCchHHHHHHHHHcCCCEEEecCcCC----------CCCeEEEec
Confidence 99999999999999999999999999887 68999999999999999999999999886 479999763
Q ss_pred eehhhhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccccceeEEEecccccccceeeeeeccCCceEEEecCCcccHHH
Q psy13351 650 YIMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSI 729 (837)
Q Consensus 650 ~~~v~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~ 729 (837)
.. . . . .....+..+.. .+++++|++.+ .|..+.....
T Consensus 245 ~~-------~----~-----------------~-~~~~~i~~i~~--------~~~~~~i~v~~------~~~~~g~~~~ 281 (421)
T 3ab4_A 245 ME-------D----I-----------------P-VEEAVLTGVAT--------DKSEAKVTVLG------ISDKPGEAAK 281 (421)
T ss_dssp GG-------G----S-----------------C-TTTCCCCEEEE--------ECSEEEEEEEE------EESSTTHHHH
T ss_pred Cc-------c----c-----------------c-cccCccceEEe--------eCCEEEEEEec------cCCcccHHHH
Confidence 10 0 0 0 00001222222 34566665553 2556888889
Q ss_pred HHHHHHhcCCCccce--e-----cC-CeeEEeCCCCCHHHHHHHHHH
Q psy13351 730 IKKAINEANLGLNPT--I-----QG-NIIYVSIPPLTKERREEIVKL 768 (837)
Q Consensus 730 I~kaI~~s~l~~~p~--~-----~~-~~i~v~iP~~T~E~R~~l~k~ 768 (837)
|.+++.+.++++.-. . +| ..|++.+|.-..+.-+++++.
T Consensus 282 If~~La~~~I~vd~I~q~~s~~~~g~~~isf~v~~~~~~~a~~~l~~ 328 (421)
T 3ab4_A 282 VFRALADAEINIDMVLQNVFSVEDGTTDITFTCPRSDGRRAMEILKK 328 (421)
T ss_dssp HHHHHHHTTCCCEEEEECCCC--CCEEEEEEEEETTTHHHHHHHHHH
T ss_pred HHHHHHHcCCcEEEEEccCccccCCcceEEEEEechhHHHHHHHHHH
Confidence 999999998877643 2 12 479999987555544444443
No 50
>2buf_A Acetylglutamate kinase; acetyglutamate kinase, ADP, arginine biosynthesis, FEED-BACK inhibition, hexamer, transferase; HET: NLG ADP; 2.95A {Pseudomonas aeruginosa} SCOP: c.73.1.2
Probab=99.93 E-value=1.9e-25 Score=241.80 Aligned_cols=220 Identities=15% Similarity=0.152 Sum_probs=176.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccc---ccc-------cCCCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS---NKI-------QNIDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~---~~~-------~~~~~~~~~ 484 (837)
+++|+|+ |++.+. +++.+..++++|+.+.+.|+++|||||||+...... ... +-.++.+++
T Consensus 27 k~iVIKl---GGs~l~------~~~~~~~~~~~i~~l~~~G~~vVlVhGgG~~i~~~~~~~g~~~~~~~g~rvt~~~~l~ 97 (300)
T 2buf_A 27 KTLVIKY---GGNAME------SEELKAGFARDVVLMKAVGINPVVVHGGGPQIGDLLKRLSIESHFIDGMRVTDAATMD 97 (300)
T ss_dssp CEEEEEE---CCTTTT------SSHHHHHHHHHHHHHHHTTCEEEEEECCCHHHHHHHHHTTCCCCBSSSSBCBCHHHHH
T ss_pred CeEEEEE---CchhhC------CchHHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHH
Confidence 4578884 333332 245788999999999999999999999985433221 111 112466788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------------------hhccchHHHHHHHhCCC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------------------LESYIPLNAIKYLEEGK 537 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------------------~~~~~~~~i~~ll~~g~ 537 (837)
.++++++|..+..++..|..+|++++++++.+.... +..++.+.+..+|+.|.
T Consensus 98 ~~~~~~~G~~~~~l~~~l~~~g~~a~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ 177 (300)
T 2buf_A 98 VVEMVLGGQVNKDIVNLINRHGGSAIGLTGKDAELIRAKKLTVTRQTPEMTKPEIIDIGHVGEVTGVNVGLLNMLVKGDF 177 (300)
T ss_dssp HHHHHHHHTHHHHHHHHHHHTTCCEEEEEETGGGCEEEEECCCCCC--------CCCCBSBEEEEEECHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEecCCCCCeeeeeeccccccchhhcccccccCCcceeEEEECHHHHHHHHHCCC
Confidence 899988888899999999999999999987643211 12457788999999999
Q ss_pred EEEEeC----CCCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccc
Q psy13351 538 VVIFAG----GIGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLE 605 (837)
Q Consensus 538 VPVv~G----~~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~ 605 (837)
|||+++ ..|.. ++++|++|+++|.+|+||.|+++|||||||++ ++++|++++++|+.+ .|+|
T Consensus 178 IpVi~~v~~~~~G~~~~i~~D~~Aa~lA~~l~Ad~li~lTdVdGv~~~------~a~~i~~i~~~e~~~~~~~~~~~ggM 251 (300)
T 2buf_A 178 IPVIAPIGVGSNGESYNINADLVAGKVAEALKAEKLMLLTNIAGLMDK------QGQVLTGLSTEQVNELIADGTIYGGM 251 (300)
T ss_dssp EEEEEEEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSCCBCT------TSCBCCEECHHHHHHHHHTTCSCTTH
T ss_pred EEEEcCceeCCCCCEEEECHHHHHHHHHHHcCCCEEEEEeCCCCeECC------CCcChhhCCHHHHHHHHHcCCCCCcc
Confidence 999995 22333 35899999999999999999999999999986 378999999988866 3678
Q ss_pred cchHHHHHHHHhCCCC-EEEEEccCcchH-HHHHcCCccceEEEEe
Q psy13351 606 IMDSTAFSFCRDQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEI 649 (837)
Q Consensus 606 v~~~~Aa~~a~~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~ 649 (837)
.+|+.|+..+.++|++ ++|+||..|+.+ .+++.|+..||+|.++
T Consensus 252 ~~Kv~aa~~a~~~gv~~v~I~~g~~~~~ll~~~~~~~~~GT~i~~~ 297 (300)
T 2buf_A 252 LPKIRCALEAVQGGVTSAHIIDGRVPNAVLLEIFTDSGVGTLISNR 297 (300)
T ss_dssp HHHHHHHHHHHHTTCSEEEEEETTSTTHHHHHHSSTTCCSEEEECC
T ss_pred HHHHHHHHHHHHhCCCEEEEeeCCCCchHHHHHhcCCCCceEEEeC
Confidence 8999999999999998 999999999987 7888898899999864
No 51
>3lhp_S 4E10_D0_1ISEA_004_N (T93); epitope-scaffold, immune system; 2.70A {Artificial gene} PDB: 1y69_8
Probab=99.93 E-value=3.7e-26 Score=205.24 Aligned_cols=90 Identities=26% Similarity=0.376 Sum_probs=87.8
Q ss_pred ecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHH
Q psy13351 745 IQGNIIYVSIPPLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEIN 824 (837)
Q Consensus 745 ~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id 824 (837)
.++++|||+|| |+|+|++|+|.|++++|++|++||||||++++.+|++.|++++|||+.++++++||+|||+|+++||
T Consensus 33 ~~~~~IRl~iP--TEERRkeLvK~akk~aEeaKVaIRNIRRDand~lKKl~Kd~eiSEDe~k~~e~eIQKLTDkyIkkID 110 (123)
T 3lhp_S 33 KFKAAVRKVFP--TEERIKDWLKIVRGEAEQARVAVRNVGRDANDKAAALGKDKEINWFDISQSLWDVQKLTDAAIKKIE 110 (123)
T ss_dssp HHHHHHTTSCC--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCTTSCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCeEEeeCC--CHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhhcCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36789999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhhhc
Q psy13351 825 QLLINKEKEILT 836 (837)
Q Consensus 825 ~~~~~kekei~~ 836 (837)
++++.||||||+
T Consensus 111 ~ll~~KEKEIm~ 122 (123)
T 3lhp_S 111 AALADMEAWLTQ 122 (123)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhc
Confidence 999999999996
No 52
>1e19_A Carbamate kinase-like carbamoylphosphate synthetase; transferase, hyperthermophiles, ADP site, phosphoryl group transfer; HET: ADP; 1.5A {Pyrococcus furiosus} SCOP: c.73.1.1
Probab=99.92 E-value=1.5e-25 Score=243.89 Aligned_cols=224 Identities=20% Similarity=0.202 Sum_probs=168.8
Q ss_pred HHHHHHhhhhhhhccCC----CccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhccccccc--CCCcchHHH
Q psy13351 416 LAVLKAQQLGEALMKGD----AYNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQ--NIDRSTADY 485 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~g~----~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~--~~~~~~~~~ 485 (837)
++|+|+ +|+ .+.++ ...++.+.+++++++|+.+++.|+++||||||| ..+.++..... ..++.+++.
T Consensus 4 ~iViK~--GGs-al~~~~~~~~~~~~~~~~~~~a~~I~~l~~~G~~vVlVhGgg~~i~~~l~~~~~~~~~~~~~~~~l~~ 80 (314)
T 1e19_A 4 RVVIAL--GGN-ALQQRGQKGSYEEMMDNVRKTARQIAEIIARGYEVVITHGNGPQVGSLLLHMDAGQATYGIPAQPMDV 80 (314)
T ss_dssp EEEEEC--CGG-GTCCTTCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCHHH
T ss_pred EEEEEE--ChH-HhcCCCCccchhhhHHHHHHHHHHHHHHHHCCCeEEEEeCChHHHhHHHHhccCccccCCCChhHHHH
Confidence 467784 444 44422 234677899999999999999999999999998 33332211111 135677888
Q ss_pred HHHHHHHHHHH----HHHHHHHHcCCce--------eEeehhch---------hh-------------h-----------
Q psy13351 486 MGMLATIINSL----ALFDILNKSGIIS--------HVMSAISI---------EK-------------F----------- 520 (837)
Q Consensus 486 ~~~~~~~~~~~----ll~~~L~~~gi~a--------~~l~~~~~---------~~-------------~----------- 520 (837)
..++.+++.+. .+...|..+|+++ +.+++.+. +. .
T Consensus 81 ~~a~~~G~i~~~l~~~l~~~l~~~gi~a~~~~~~~qv~l~~~d~~f~~~~k~~g~~~t~~~a~~~~~~~g~~~~g~~~~~ 160 (314)
T 1e19_A 81 AGAMSQGWIGYMIQQALKNELRKRGMEKKVVTIITQTIVDKNDPAFQNPTKPVGPFYDEETAKRLAREKGWIVKEDSGRG 160 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEEEEEEECHHHHHHHHHHHCCEEEECTTSC
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHcCCchhhhhhheeeeecccchhhccccccccceecHHHhhhhhhhcCcccccccccc
Confidence 88777775433 3446688999886 56665551 00 0
Q ss_pred ----------hhccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeeccCcc
Q psy13351 521 ----------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGI 577 (837)
Q Consensus 521 ----------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~L~Ad~liilTDVdGV 577 (837)
+..++.+.+..+|++|.|||++||.|.|. +++|++|+++|.+|+||+|+++||||||
T Consensus 161 ~~~~v~s~~~i~~v~~~~i~~lL~~g~IpV~~Gg~giPi~~~~d~~~g~~~~~d~D~~Aa~lA~~l~Ad~li~lTdVdGv 240 (314)
T 1e19_A 161 WRRVVPSPDPKGHVEAETIKKLVERGVIVIASGGGGVPVILEDGEIKGVEAVIDKDLAGEKLAEEVNADIFMILTDVNGA 240 (314)
T ss_dssp EEEEECCCCEEEETTHHHHHHHHHTTCEEECSGGGCEEEEEETTEEEECCCCCCHHHHHHHHHHHTTCSEEEEEESSSSC
T ss_pred ccccccCcccceeehHHHHHHHHHCCCEEEEeCCCccCeEECCCCcceeEEeccHHHHHHHHHHHcCCCEEEEeccCCEE
Confidence 11246788999999999999998766552 4479999999999999999999999999
Q ss_pred ccCCCCCCCCceeccccCHHHHHHh--------ccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 578 YNSDPNKCLSAIIYKKITFDEVISK--------KLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 578 y~~dP~~~~~a~~I~~is~~e~~~~--------G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|++|| +|++++|++++++|+.+. |+|.+|+.|+ +++.+.+++++|+++ +.+.+++.| ..||+|.+
T Consensus 241 y~~~p--~~~a~~i~~i~~~e~~~~~~~g~~~~GgM~~Kv~aa~~~~~~~~~~v~I~~~---~~l~~~~~g-~~GT~i~~ 314 (314)
T 1e19_A 241 ALYYG--TEKEQWLREVKVEELRKYYEEGHFKAGSMGPKVLAAIRFIEWGGERAIIAHL---EKAVEALEG-KTGTQVLP 314 (314)
T ss_dssp EETTT--STTCEECCEEEHHHHHHHHHTTCSCTTTHHHHHHHHHHHHHHTCSEEEEEEG---GGHHHHHTT-SSSEEEEC
T ss_pred ECCCC--CCCCeECCEECHHHHHHHHhCCCcCCCChHHHHHHHHHHHHhCCCeEEEecH---HHHHHHHcC-CCCeEEcC
Confidence 99999 489999999999888762 7899999877 557778899999985 458889998 48999974
No 53
>3l76_A Aspartokinase; allostery, ACT domains, kinase transferase; HET: LYS; 2.54A {Synechocystis}
Probab=99.92 E-value=1.4e-24 Score=254.90 Aligned_cols=203 Identities=24% Similarity=0.258 Sum_probs=163.5
Q ss_pred cccchhhhhhhhHHhhhcCceEEEEeCc-chhhhcccccc----cCCCcchHHHHHHHHHHHHHHHHHHHHHHcCCceeE
Q psy13351 437 NSSIIKNIISEISEIVSCGIELAIVIGG-GNICRGISNKI----QNIDRSTADYMGMLATIINSLALFDILNKSGIISHV 511 (837)
Q Consensus 437 ~~~~i~~la~~I~~l~~~G~~vVIVhGG-G~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~ 511 (837)
+++.++++++.|+.+++.|++++||||| |.....+.... ...++..++.+..++...++.+++.+|+.+|+++++
T Consensus 15 ~~~~i~~va~~i~~~~~~g~~vvvV~sa~G~~t~~ll~~~~~~~~~~~~~~~d~l~s~Ge~~s~~l~~~~l~~~G~~a~~ 94 (600)
T 3l76_A 15 TVERIQAVAQRIKRTVQGGNSLVVVVSAMGKSTDVLVDLAQQISPNPCRREMDMLLSTGEQVSIALLSLALQEIDQPAIS 94 (600)
T ss_dssp SHHHHHHHHHHHHHHHHTTCEEEEEECCSSTHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE
T ss_pred CHHHHHHHHHHHHHHHHCCCcEEEEECCCcHHHHHHHHHHHhhccCCCHHHHHHHHHHhHHHHHHHHHHHHHhCCCCeEE
Confidence 4589999999999999999999999999 85544333221 112223333333333335788889999999999999
Q ss_pred eehhchhhh---------hhccchHHHHHHHhCCCEEEEeCCCCCC-----CCc------chHHHHHHHHHcCCcEEEEe
Q psy13351 512 MSAISIEKF---------LESYIPLNAIKYLEEGKVVIFAGGIGNP-----FFT------TDTTAALRAAEIKAEIILKA 571 (837)
Q Consensus 512 l~~~~~~~~---------~~~~~~~~i~~ll~~g~VPVv~G~~G~~-----~~s------~D~lAa~lA~~L~Ad~liil 571 (837)
+++.+.... +...+++.+..+|+.|.|||++|+.|.+ .++ +|++|+++|.+|+||.|++|
T Consensus 95 l~~~~~~l~~~~~~~~~~~~~~~~~~i~~ll~~g~IpVv~Gf~g~~~~g~~~~~tlgrGgsD~~Aa~lA~~l~Ad~l~i~ 174 (600)
T 3l76_A 95 LTGAQVGIVTEAEHSRARILEIRPDRLEHHLREGKVVVVAGFQGISSVEHLEITTLGRGGSDTSAVALAAALKADFCEIY 174 (600)
T ss_dssp EEGGGTEEEEC-------CCEEEECCHHHHHTTTCEEEEECEEEC----CEEEECCCTTHHHHHHHHHHHHHTCSEEEEE
T ss_pred echhHcceEEecCCCCceeccccHHHHHHHHhCCCEEEEECCeecCCCCCEEEecCCCCChHHHHHHHHHHcCCCEEEEE
Confidence 999886322 2233457899999999999999976632 233 69999999999999999999
Q ss_pred eccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 572 TKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 572 TDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
|||||||++||+.+|+|++|++++++|+.+ .|..++++.|+++|.++|+|++|.|++++ ..||+|.+
T Consensus 175 TDVdGv~~~dPr~~~~a~~i~~is~~e~~ela~~G~~vm~p~a~~~a~~~gipv~I~n~~~~----------~~GT~I~~ 244 (600)
T 3l76_A 175 TDVPGILTTDPRLVPEAQLMAEITCDEMLELASLGAKVLHPRAVEIARNYGIPLVVRSSWSD----------EPGTKVVA 244 (600)
T ss_dssp ESSSSCBSSCTTTCTTCCBCSEEEHHHHHHTGGGGTTTCCHHHHHHHHHHTCCEEEEETTCC----------SCCEEEEC
T ss_pred ECCCcCCCCCCCCCCCCeEeeEEcHHHHHHHHhCCCCccHHHHHHHHHHCCCeEEEEECCCC----------CCCeEEec
Confidence 999999999999999999999999999988 78899999999999999999999999874 47999986
Q ss_pred e
Q psy13351 649 I 649 (837)
Q Consensus 649 ~ 649 (837)
+
T Consensus 245 ~ 245 (600)
T 3l76_A 245 P 245 (600)
T ss_dssp C
T ss_pred C
Confidence 5
No 54
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=99.91 E-value=3.5e-25 Score=211.22 Aligned_cols=97 Identities=39% Similarity=0.654 Sum_probs=89.4
Q ss_pred cCCCeeEEEEe--CCEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCCh--h-----------------------
Q psy13351 267 AKDGVIAIYIS--EKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINL--D----------------------- 319 (837)
Q Consensus 267 ~~eG~i~~y~~--~~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~--~----------------------- 319 (837)
|+||+|++|+| |++|||||+||||||||||+.|++|+++||||+||++|.++ +
T Consensus 1 a~EG~v~~yiH~~gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~~e~vp~~~~e~E~~i~~~~~~~~gK 80 (145)
T 1tfe_A 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAALNEGK 80 (145)
T ss_dssp CCEEEEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcEEEEEEecCCCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccchhhCCHHHHHHHHHHHHHHHHhcCC
Confidence 57999999999 89999999999999999999999999999999999999887 3
Q ss_pred ---------------------hhhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 320 ---------------------QLNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 320 ---------------------~l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
-++|+|++|++.||+|++++.++++||||+|+||.||++|+|++
T Consensus 81 Pe~i~ekiv~Grl~Kf~~e~~Ll~Q~fv~d~~~tV~~~l~~~~~~iGeni~v~rf~r~~vGegi~ 145 (145)
T 1tfe_A 81 PQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQQAIAKIGENIVVRRFCRFELGAMMC 145 (145)
T ss_dssp CHHHHHHHHHHHHHHHHHHHBGGGSEETTEEEEEHHHHHHHHHHHHCSCCEEEEEEEEETTC---
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhCccccCCCccHHHHHHHHHHhhCCCeEEEEEEEEEeCCCCC
Confidence 26799999999999999999999999999999999999999874
No 55
>3kzf_A Carbamate kinase; arginine dihydrolase pathway, giardia LAMB target, transferase; 3.00A {Giardia lamblia atcc 50803}
Probab=99.90 E-value=3.7e-24 Score=227.95 Aligned_cols=226 Identities=15% Similarity=0.134 Sum_probs=169.4
Q ss_pred HHHHHHhhhhhhhcc-CCC--ccccccchhhhhhhhHHhhhcCceEEEEeCcc----hhhhcccccccCCCcchHHHHHH
Q psy13351 416 LAVLKAQQLGEALMK-GDA--YNINSSIIKNIISEISEIVSCGIELAIVIGGG----NICRGISNKIQNIDRSTADYMGM 488 (837)
Q Consensus 416 ~~v~k~~~~gs~~~~-g~~--~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG----~~~~~~~~~~~~~~~~~~~~~~~ 488 (837)
++++++ +|.++.. |.+ .....+.++..|++|+++.+.|++++|+||+| +..++........++.+++.+.+
T Consensus 7 ~ivval--gGnal~~~g~~~~~~~q~~~v~~~a~~i~~~~~~g~~vvi~hGnGPQVG~i~~~~~~~~~~~~~~pld~~~A 84 (317)
T 3kzf_A 7 TVVIAL--GGNAMLQAKEKGDYDTQRKNVEIAASEIYKIHKAGYKVVLTSGNGPQVGAIKLQNQAAAGVSPEMPLHVCGA 84 (317)
T ss_dssp EEEEEC--CSTTTC--CCCCCHHHHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHHHHHHSTTSSSCCCCHHHHHH
T ss_pred EEEEEc--ChhhhCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHHhccccCCCCCccccCc
Confidence 456665 6667654 232 23455578999999999999999999999995 65554332222346788999999
Q ss_pred HHHHHHHHHHHHH----HHHcCCceeEeehhch-----------------h---------hh------------------
Q psy13351 489 LATIINSLALFDI----LNKSGIISHVMSAISI-----------------E---------KF------------------ 520 (837)
Q Consensus 489 ~~~~~~~~ll~~~----L~~~gi~a~~l~~~~~-----------------~---------~~------------------ 520 (837)
..+|+.+++|+.+ |...|++....+..+. + ..
T Consensus 85 ~sqG~igy~l~~al~~~l~~~g~~~~v~t~itq~~Vd~~Dpaf~~PtKpiG~~y~~~ea~~~~~~~~~~~~~ed~grg~R 164 (317)
T 3kzf_A 85 MSQGFIGYMMSQAMDNVFCANNEPANCVTCVTQTLVDPKDQAFTNPTKPVGRFYTEQEAKDLMAANPGKILREDAGRGWR 164 (317)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCCCCEEEBCCEEEECTTCGGGTSCCEECC--------------------------CCC
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCCceeEEEEEEEECCCCccccCCCCCcCCCCCHHHHHHHHHhccCCeEeecCCCCee
Confidence 9999988877444 6677765432222111 0 00
Q ss_pred --------hhccchHHHHHHHhCCCEEEEeCCCCCCC-------------CcchHHHHHHHHHcCCcEEEEeeccCcccc
Q psy13351 521 --------LESYIPLNAIKYLEEGKVVIFAGGIGNPF-------------FTTDTTAALRAAEIKAEIILKATKVDGIYN 579 (837)
Q Consensus 521 --------~~~~~~~~i~~ll~~g~VPVv~G~~G~~~-------------~s~D~lAa~lA~~L~Ad~liilTDVdGVy~ 579 (837)
...++.+.|..+|+.|.|||++||.|.|. +++|++|+++|.+|+||+|+|+|||||||+
T Consensus 165 rvV~sP~P~~iVe~~~I~~LL~~G~IvI~aGGgGiPv~~~~~~~~G~~~~id~D~~Aa~lA~~L~AD~LIiLTDVdGVy~ 244 (317)
T 3kzf_A 165 VVVPSPRPLEIVEYGVIKTLIDNNVLVICTNGGGIPCKRENKVISGVDAVIDKDLATSLLAKTLNSDYLMILTDVLNACI 244 (317)
T ss_dssp CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEECSSCEEECSCCCCHHHHHHHHHHHHTCSCEEECCSSSSCEE
T ss_pred eecCCCCCcceECHHHHHHHHHCCCEEEEeCCCCCCcccCCCcccceEEeccHHHHHHHHHHHhCCCEEEEecCCCeeeC
Confidence 11235588999999999999998777653 239999999999999999999999999999
Q ss_pred CCCCCCCCceeccccCHHHHHH--------hccccchHHHHHHHH-hCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 580 SDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCR-DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 580 ~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~-~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
||+ .|++++|++++.+|+.+ .|+|.+|+.|+..+. +.+.+++|+|+ +.+.+++.|+ .||+|.++
T Consensus 245 -dp~-~p~a~~I~~it~~e~~~li~~g~~~~GGM~pKl~AA~~av~~gg~~v~I~s~---~~l~~~l~G~-~GT~I~~d 317 (317)
T 3kzf_A 245 -NYK-KPDERKLEEIKLSEILALEKDGHFAAGSMGPKVRAAIEFTQATGKMSIITSL---STAVDALNGK-CGTRIIKD 317 (317)
T ss_dssp -SSS-CSSCEECCEEEHHHHHHHHTTTSCC--CCHHHHHHHHHHHHHHCCCEEECCG---GGHHHHHTTS-SSEEEECC
T ss_pred -CCC-CCCCeECcCcCHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCeEEEcch---HHHHHHHCCC-CCeEEecC
Confidence 888 69999999999988765 378999999887764 46678999986 3577899998 89999874
No 56
>1gs5_A Acetylglutamate kinase; carbamate kinase, amino acid kinase, arginine biosynthesis, phosphoryl group transfer, protein crystallography; HET: NLG ANP; 1.5A {Escherichia coli} SCOP: c.73.1.2 PDB: 1gsj_A* 1oh9_A* 1oha_A* 1ohb_A* 2wxb_A 2x2w_A* 3t7b_A*
Probab=99.90 E-value=4.6e-23 Score=218.66 Aligned_cols=203 Identities=17% Similarity=0.172 Sum_probs=153.2
Q ss_pred ccchhhhhhhhHHhhhcCc-eEEEEeCcchhhhcccc-------cccCC---CcchHHHHHHHHHHHHHHHHHHHHHHcC
Q psy13351 438 SSIIKNIISEISEIVSCGI-ELAIVIGGGNICRGISN-------KIQNI---DRSTADYMGMLATIINSLALFDILNKSG 506 (837)
Q Consensus 438 ~~~i~~la~~I~~l~~~G~-~vVIVhGGG~~~~~~~~-------~~~~~---~~~~~~~~~~~~~~~~~~ll~~~L~~~g 506 (837)
++.+++++++|+.+.+.|. ++|||||||.....+.. ...++ +...++...++..+..+..|.+.|..+|
T Consensus 17 ~~~~~~~~~~i~~l~~~g~~~vVvV~Ggg~~~~~ll~~~g~~~~~~~glr~t~~~~l~~~~~~l~~~~n~~l~~~l~~~G 96 (258)
T 1gs5_A 17 EEALERLFSALVNYRESHQRPLVIVHGGGCVVDELMKGLNLPVKKKNGLRVTPADQIDIITGALAGTANKTLLAWAKKHQ 96 (258)
T ss_dssp HHHHHHHHHHHHHHHTTCCSCEEEEECCHHHHHHHHHHHTCCCCEETTEECBCHHHHHHHHHHHHTHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHHHHcCCCeEEEEeCCcHHHHHHHHHcCCCcceeCCEeeCCHHHHHHHHHHHhccchHHHHHHHHHCC
Confidence 4778999999998877655 58999999955432221 11122 2233333334444444445556789999
Q ss_pred CceeEeehhchhhh--------------hhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcE
Q psy13351 507 IISHVMSAISIEKF--------------LESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEI 567 (837)
Q Consensus 507 i~a~~l~~~~~~~~--------------~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~L~Ad~ 567 (837)
++++++++.+.+.+ ...++++.+..+++.|.|||++|+ .|.. ++++|++|+.+|.+|+||
T Consensus 97 ~~a~~l~~~~~~~~~~~~~~~d~~~~g~~~~~~~~~i~~ll~~g~ipVi~~~g~~~~g~~~~~~~D~~Aa~lA~~l~Ad- 175 (258)
T 1gs5_A 97 IAAVGLFLGDGDSVKVTQLDEELGHVGLAQPGSPKLINSLLENGYLPVVSSIGVTDEGQLMNVNADQAATALAATLGAD- 175 (258)
T ss_dssp CCEEEECTTGGGCEEEEECCGGGBSBEEEEECCCHHHHHHHHTTCEEEECSEEECTTSCEEECCHHHHHHHHHHHHTCE-
T ss_pred CCeEEEeecCCCEEEEEEcCCCCCCcCceeEECHHHHHHHHHCCCEEEEeCCcCCCCCcEEEecHHHHHHHHHHHhCCc-
Confidence 99999998875311 235678899999999999999985 2222 456999999999999999
Q ss_pred EEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHH-HHHHhCCCCEEEEEccCcchHHHHHcC
Q psy13351 568 ILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAF-SFCRDQKLPIRVFSIIKSGALKRVIEG 639 (837)
Q Consensus 568 liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa-~~a~~~gi~v~I~ng~~~~~i~~al~G 639 (837)
++++|||||||++| +++|++++++|+.+ .|+|.+++.++ +.+.+.+++++|+|+.+|+.+.+++.|
T Consensus 176 li~ltdV~Gv~~~d------~~~i~~i~~~e~~~l~~~~~~~gGm~~k~~~a~~~~~~~~~~v~I~~~~~~~~l~~~~~~ 249 (258)
T 1gs5_A 176 LILLSDVSGILDGK------GQRIAEMTAAKAEQLIEQGIITDGMIVKVNAALDAARTLGRPVDIASWRHAEQLPALFNG 249 (258)
T ss_dssp EEEEESSSSCBCTT------SCBCCEECHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHTSCEEEEESSCGGGHHHHHTT
T ss_pred EEEEeCCCceECCC------CCCCcccCHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhCCCEEEEecCCCchHHHHHhcC
Confidence 99999999999875 57899999988866 35566666554 556677999999999999999999999
Q ss_pred CccceEEE
Q psy13351 640 KNEGTLVY 647 (837)
Q Consensus 640 e~~GT~I~ 647 (837)
+.+||+|.
T Consensus 250 ~~~GT~i~ 257 (258)
T 1gs5_A 250 MPMGTRIL 257 (258)
T ss_dssp CCSSEEEC
T ss_pred CCCcEEEe
Confidence 99999985
No 57
>3d2m_A Putative acetylglutamate synthase; protein-COA-Glu ternary complex, transferase; HET: COA GLU; 2.21A {Neisseria gonorrhoeae} PDB: 2r8v_A* 3b8g_A* 2r98_A* 3d2p_A*
Probab=99.89 E-value=3.7e-23 Score=237.27 Aligned_cols=219 Identities=14% Similarity=0.139 Sum_probs=166.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhc---cccccc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRG---ISNKIQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~---~~~~~~----~---~~~~~~~ 484 (837)
+++|+|+ |++.+.. ++ +..++++|+.+.+.|+++|||||||..... ...... + .++.+++
T Consensus 44 ~~iViK~---GG~~l~~------~~-~~~~~~~i~~l~~~g~~vvlVhggg~~~~~~~~~~~~~~~~~~g~r~t~~~~l~ 113 (456)
T 3d2m_A 44 TTLVAGI---DGRLLEG------GT-LNKLAADIGLLSQLGIRLVLIHGAYHFLDRLAAAQGRTPHYCRGLRVTDETSLG 113 (456)
T ss_dssp CEEEEEE---CGGGGTS------TH-HHHHHHHHHHHHHTTCEEEEEECCHHHHHTTTTTTTCCCCCGGGCCCBCHHHHH
T ss_pred CEEEEEE---ChHHhcC------ch-HHHHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHCCCCCEeeCCeecCCHHHHH
Confidence 4578884 4444432 12 789999999999999999999999855322 222111 1 2456677
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCce----eEeehhchhh------------------hhhccchHHHHHHHhCCCEEEEe
Q psy13351 485 YMGMLATIINSLALFDILNKSGIIS----HVMSAISIEK------------------FLESYIPLNAIKYLEEGKVVIFA 542 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a----~~l~~~~~~~------------------~~~~~~~~~i~~ll~~g~VPVv~ 542 (837)
..++++ +..+..+.+.|. .|+++ +++++.+... .+..++.+.+..+|+.|.|||++
T Consensus 114 ~~~~~~-G~~~~~l~~~l~-~g~~~~~~~~~l~~~~~~~~~~~~~~~~~~~d~g~~g~v~~v~~~~i~~lL~~g~ipIi~ 191 (456)
T 3d2m_A 114 QAQQFA-GTVRSRFEAALC-GSVSGFARAPSVPLVSGNFLTARPIGVIDGTDMEYAGVIRKTDTAALRFQLDAGNIVWMP 191 (456)
T ss_dssp HHHHHH-HHHHHHHHHHHH-TC--------CCCEECCSCEEEEECCEETTEECBTBEEEEEECHHHHHHHHHTTCEEEEC
T ss_pred HHHHHH-hHHHHHHHHHHh-cccccCCCccceeeccCcEEEEEEcccccCcccCceeeEEEECHHHHHHHHHCCCeEEEC
Confidence 776665 666777788888 88888 6666665321 12346788999999999999999
Q ss_pred CC----CCCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-----hccccchHHHH
Q psy13351 543 GG----IGNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-----KKLEIMDSTAF 612 (837)
Q Consensus 543 G~----~G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-----~G~~v~~~~Aa 612 (837)
+. .|.. ++++|++|+.+|.+|+||.|+|+|||||||++ ++++|++++++|+.+ .|+|.+|+.||
T Consensus 192 ~~~~~~~g~~~~~~~D~~Aa~lA~~l~Ad~li~lTdvdGv~~~------~~~~i~~i~~~e~~~~~~~g~ggm~~Kl~aa 265 (456)
T 3d2m_A 192 PLGHSYGGKTFNLDMVQAAASVAVSLQAEKLVYLTLSDGISRP------DGTLAETLSAQEAQSLAEHAASETRRLISSA 265 (456)
T ss_dssp SEEECTTSCEEECCHHHHHHHHHHHHTCSEEEEEESSSSCBCT------TSCBCSEEEHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CcccCCCCCEEEECHHHHHHHHHHHcCCCEEEEEECCccccCC------CCCccccCCHHHHHHHHhccCCChHHHHHHH
Confidence 62 2222 36799999999999999999999999999986 578999999988876 28899999999
Q ss_pred HHHHhCCCC-EEEEEccCcchH-HHHHcCCccceEEEEeee
Q psy13351 613 SFCRDQKLP-IRVFSIIKSGAL-KRVIEGKNEGTLVYEIYI 651 (837)
Q Consensus 613 ~~a~~~gi~-v~I~ng~~~~~i-~~al~Ge~~GT~I~~~~~ 651 (837)
..|.++|++ ++|+|+..|+++ ..++.|+..||+|.++..
T Consensus 266 ~~a~~~gv~~v~I~~~~~~~~ll~~l~~~~~~GT~i~~~~~ 306 (456)
T 3d2m_A 266 VAALEGGVHRVQILNGAADGSLLQELFTRNGIGTSIAKEAF 306 (456)
T ss_dssp HHHHHTTCSEEEEEETTSTTHHHHHHHCSSCSSEEEECCCC
T ss_pred HHHHHhCCCEEEEecCcCCchHHHHHHhhcCCceeeecccc
Confidence 999999995 999999999998 566788889999998743
No 58
>4axs_A Carbamate kinase; oxidoreductase; 2.50A {Mycoplasma penetrans}
Probab=99.89 E-value=4.9e-23 Score=223.33 Aligned_cols=225 Identities=17% Similarity=0.143 Sum_probs=160.7
Q ss_pred HHHHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchh----hhc--cccc-ccCCCcchHHH
Q psy13351 413 EYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNI----CRG--ISNK-IQNIDRSTADY 485 (837)
Q Consensus 413 ek~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~----~~~--~~~~-~~~~~~~~~~~ 485 (837)
.-+|+|+|+ +|.++ .+ +.....+.++.+|++|+.|.+.|+++|||||||.. ... .... ....+..+++.
T Consensus 23 ~MkRIVIkl--GGnAL-~~-~~~~q~~~~~~~a~~Ia~L~~~G~~vVvVHGgGPQVG~i~~~l~~~~~~~~~~~~~~l~~ 98 (332)
T 4axs_A 23 HMSRIVIAL--GGNAL-GD-NPSQQKELVKIPAAKIAALIQEGHEVIVGHGNGPQVGMIFNAFADAKKANEKTALVPFAE 98 (332)
T ss_dssp ---CEEEEE--CGGGG-CS-SHHHHHHHTHHHHHHHHHHHHTTCCEEEEECCHHHHHHHHHHHHHTTTTTSCCCCCCHHH
T ss_pred CcceEEEEE--Chhhc-CC-ChHHHHHHHHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHHhccccCCCCCchhHH
Confidence 335689995 44554 32 22345678899999999999999999999999832 221 1111 22345667777
Q ss_pred HHHHHHHHHHHHHHHH----HHHcCCce--------eEeehhchh-----------------------------------
Q psy13351 486 MGMLATIINSLALFDI----LNKSGIIS--------HVMSAISIE----------------------------------- 518 (837)
Q Consensus 486 ~~~~~~~~~~~ll~~~----L~~~gi~a--------~~l~~~~~~----------------------------------- 518 (837)
+.++..+...+.|+.. |...|+.. +.+++.|..
T Consensus 99 ~~a~tqg~ig~~l~~~l~~~l~~~gi~~~v~~~vtqv~V~~~D~af~~p~K~iG~~~~~~ea~~l~~~~~~~~~~~~~g~ 178 (332)
T 4axs_A 99 AGGMSQGYIGYHMLTAISNELKKLNIQKDVLYFLTQTIVDANDPAFKNPTKPVGPFYSSKEIAEANNPNSVIVEDAGRGF 178 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCCCEEECCCEEEECTTCHHHHSCCEECSCCCC--------CTTSCCC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcceeeeeeeeeecccchhhhCcCceeccccCHHHHHHHHhcCCEEEEccCCCc
Confidence 7777777666555444 56666543 333333210
Q ss_pred -------hhhhccchHHHHHHHhCCCEEEEeCCCCCC-------------CCcchHHHHHHHHHcCCcEEEEeeccCccc
Q psy13351 519 -------KFLESYIPLNAIKYLEEGKVVIFAGGIGNP-------------FFTTDTTAALRAAEIKAEIILKATKVDGIY 578 (837)
Q Consensus 519 -------~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~-------------~~s~D~lAa~lA~~L~Ad~liilTDVdGVy 578 (837)
.....++.+.+..++++|+|||++|+.|.| ++.+|++|+.||.+|+||.|+|||||||||
T Consensus 179 rrvV~sp~p~~ive~~~I~~L~~~g~Ivi~~ggggipv~~~~~~~~G~~~vid~D~~Aa~lA~~l~Ad~LiiLTdV~gv~ 258 (332)
T 4axs_A 179 RKVVASPIPVDFIGIDAIKQNVNNGCVCIVGGGGGIPTIIQDNQYIGVDGVIDKDFALAKIADAVNADIFVVLTAVDYVY 258 (332)
T ss_dssp -CEECCCCEEEETTHHHHHHHHHTTCEEECCGGGCEEEEESSSCEEECSSCCCHHHHHHHHHHHTTCSEEEEECSCSSCE
T ss_pred eEECCCCCCceeecHHHHHHhhcCCeEEEecccCCCCccccCCcccCceeeechHHHHHHHHHHhCCceEEEEecCCceE
Confidence 001124567899999999999987754433 345999999999999999999999999999
Q ss_pred cCCCCCCCCceeccccCHHHHHH--------hccccchHHHHHHHHhCCC--CEEEEEccCcchHHHHHcCCccceEEE
Q psy13351 579 NSDPNKCLSAIIYKKITFDEVIS--------KKLEIMDSTAFSFCRDQKL--PIRVFSIIKSGALKRVIEGKNEGTLVY 647 (837)
Q Consensus 579 ~~dP~~~~~a~~I~~is~~e~~~--------~G~~v~~~~Aa~~a~~~gi--~v~I~ng~~~~~i~~al~Ge~~GT~I~ 647 (837)
+++|+ |++++|++++.+|+.+ .|+|.+|+.||..+.+.|. .++|.+ ++.+.+++.|+ .||+|+
T Consensus 259 ~~~~~--~~~~~i~~it~~e~~~~~~~g~~~~GgM~pKv~Aa~~~v~~g~g~~~iI~~---~~~~~~~l~g~-~GT~Iv 331 (332)
T 4axs_A 259 VDFNK--PTQKALKTVDVKALNNFINQDQFAKGSMLPKIKAAMGFVNGHPNRSAIIAD---LSKVEDALKGL-SGTKII 331 (332)
T ss_dssp ESTTS--TTCEECSSCBHHHHHHHHHTTCSCTTTTHHHHHHHHHHHTTCTTCEEEEEC---STTHHHHTTTS-SSEEEB
T ss_pred cCCCC--cchhhcccCCHHHHHHHHHCCCcCcCCcHHHHHHHHHHHHhCCCcEEEECC---HHHHHHHHCCC-CCcEEe
Confidence 99886 7899999999988865 4789999999887777654 455543 55689999997 799996
No 59
>3l86_A Acetylglutamate kinase; ARGB, amino-acid biosynthesis, arginine biosynthesi binding, nucleotide-binding, transferase; HET: ADP NLG; 2.06A {Streptococcus mutans}
Probab=99.89 E-value=2.5e-23 Score=221.23 Aligned_cols=204 Identities=17% Similarity=0.191 Sum_probs=158.9
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhh---hcccccccC-------CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNIC---RGISNKIQN-------IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~---~~~~~~~~~-------~~~~~~~ 484 (837)
+++|+| .|++.++. .+++++++|+.|++.|+++|||||||... +........ .++..++
T Consensus 37 k~iVIK---iGGs~l~~--------~~~~l~~dIa~L~~~G~~vVlVhgGg~~i~~~l~~lg~~~~~~~G~Rvtd~~~l~ 105 (279)
T 3l86_A 37 DIIVIK---IGGVASQQ--------LSGDFLSQIKNWQDAGKQLVIVHGGGFAINKLMEENQVPVKKINGLRVTSKDDMV 105 (279)
T ss_dssp CEEEEE---ECTTGGGS--------CCHHHHHHHHHHHHTTCEEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHH
T ss_pred ceEEEE---EChHHHHh--------HHHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHHHcCCCCccCCCcccCcHHHHH
Confidence 467889 45554433 26789999999999999999999997332 211221111 2445667
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------------hhccchHHHHHHHhCCCEEEEeC----CC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------------LESYIPLNAIKYLEEGKVVIFAG----GI 545 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------------~~~~~~~~i~~ll~~g~VPVv~G----~~ 545 (837)
..+++.++..+..+.+.|..+|++++.+++.+.+.+ +..++.+.+..+|+.|.|||++| ..
T Consensus 106 ~v~~~l~G~ln~~i~~~L~~~G~~a~~l~g~dg~llta~~~~~~d~g~vG~i~~v~~~~i~~lL~~g~IPVi~~v~~~~~ 185 (279)
T 3l86_A 106 LVSHALLDLVGKNLQEKLRQAGVSCQQLKSDIKHVVAADYLDKDTYGYVGDVTHINKRVIEEFLENRQIPILASLGYSKE 185 (279)
T ss_dssp HHHHHHHHTTHHHHHHHHHHTTCCEEECSGGGGGTEEEEESCHHHHBSBEEEEEECHHHHHHHHHTTCEEEEESEEECTT
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCEEEEecCcCCEEEeeccCccccCcccccchhhHHHHHHHHhCCcEEEECCcEECCC
Confidence 777777777677789999999999999998876432 22357899999999999999998 11
Q ss_pred CCC-CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH-------hccccchHHHHHHHHh
Q psy13351 546 GNP-FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS-------KKLEIMDSTAFSFCRD 617 (837)
Q Consensus 546 G~~-~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~-------~G~~v~~~~Aa~~a~~ 617 (837)
|.. ++++|++|+.+|.+|+||+|+|+|||||||+ ++++|++++++|+.+ .|+|.+|+.|+..|.+
T Consensus 186 G~~~~i~~D~~Aa~lA~~L~Ad~LiilTDVdGV~~-------d~~~I~~i~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~ 258 (279)
T 3l86_A 186 GDMLNINADYLATAVAVALAADKLILMTNVKGVLE-------NGAVLEKITSHQVQEKIDTAVITAGMIPKIESAAKTVA 258 (279)
T ss_dssp SCEEECCHHHHHHHHHHHTTCSEEEEECSSSSCEE-------TTEECCEEEGGGSHHHHHTTSSCTTHHHHHHHHHHHHH
T ss_pred CCEeecCHHHHHHHHHHHcCCCEEEEEeCCCcccc-------CCEehhhccHHHHHHHHhCCCCcCcHHHHHHHHHHHHH
Confidence 221 3479999999999999999999999999995 468899998877655 4899999999999999
Q ss_pred CCCC-EEEEEccCcchHHHHHcCCccceEEEE
Q psy13351 618 QKLP-IRVFSIIKSGALKRVIEGKNEGTLVYE 648 (837)
Q Consensus 618 ~gi~-v~I~ng~~~~~i~~al~Ge~~GT~I~~ 648 (837)
+|++ ++|+|++. . ||+|+.
T Consensus 259 ~Gv~~v~I~~~~~-----------~-GT~i~~ 278 (279)
T 3l86_A 259 AGVGQVLIGDNLL-----------T-GTLITA 278 (279)
T ss_dssp TTCSEEEEESSSS-----------C-SEEEEC
T ss_pred cCCCEEEEeccCC-----------C-CeEEec
Confidence 9998 99999876 2 999974
No 60
>3zzh_A Acetylglutamate kinase; transferase, arginine biosynthesis; HET: ARG NLG; 2.10A {Saccharomyces cerevisiae} PDB: 3zzg_A 3zzf_A*
Probab=99.89 E-value=4.7e-23 Score=221.63 Aligned_cols=201 Identities=15% Similarity=0.143 Sum_probs=156.6
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---cc-------CCCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ-------NIDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~-------~~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++++++|+.+...|.++|||||||+........ .. -.++.+++.+.++.. ..+..++..|.++|++++
T Consensus 64 ~~~~~~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~~~~G~RvTd~~~l~vv~m~~~-~vn~~lv~~L~~~G~~Av 142 (307)
T 3zzh_A 64 LHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMAVVRKCFL-EQNLKLVTALEQLGVRAR 142 (307)
T ss_dssp HHHHHHHHHHHHHBTCCEEEEECCHHHHHHHHHHTTCCCCEETTEECBCHHHHHHHHHHHH-HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHcCCCccccCCeecCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCee
Confidence 7899999999999999999999999554433222 11 125677888887765 456777889999999999
Q ss_pred Eeehhch----------h--hhhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 511 VMSAISI----------E--KFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 511 ~l~~~~~----------~--~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
++++.-+ + ..+..++++.+..+|+.|.|||++|. .|.. ++++|++|+.+|.+|+||+|+|+||
T Consensus 143 ~l~gg~~~a~~~~~~d~g~~G~i~~v~~~~i~~lL~~g~IpVi~~~g~~~~G~~~~i~~D~~A~~lA~~L~Ad~Li~lTd 222 (307)
T 3zzh_A 143 PITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQMLNVNADVAAGELARVFEPLKIVYLNE 222 (307)
T ss_dssp EECSSSEEEEESCHHHHBSBEEEEEECCHHHHHHHHHTCEEEECCCEECTTCBEEBCCHHHHHHHHHHHHCCSEEEEECS
T ss_pred EEcCCcEEEEecCccccCccccccccCHHHHHHHHHCCCEEEEeCCeECCCCcEEecCHHHHHHHHHHhCCCCEEEEEeC
Confidence 9986221 0 01345788999999999999999983 1221 3679999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHHH-HHH-------hccccchHHHHHHHHhC---CCCEEEEEccCcchHH-HHHcCCc
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFDE-VIS-------KKLEIMDSTAFSFCRDQ---KLPIRVFSIIKSGALK-RVIEGKN 641 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~e-~~~-------~G~~v~~~~Aa~~a~~~---gi~v~I~ng~~~~~i~-~al~Ge~ 641 (837)
|||||++ |++++|++++..| +.+ .|+|.+|+.|++.|.+. |.+++|++ |+.+. .++.++.
T Consensus 223 V~GV~~~-----~~~~~i~~i~~~e~~~~l~~~~~~tGGM~~Kl~aa~~a~~~v~~g~~v~I~~---~~~ll~elft~~g 294 (307)
T 3zzh_A 223 KGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYLPRSSSVAIIN---VQDLQKELFTDSG 294 (307)
T ss_dssp SCSCEET-----TTTEECCEEEHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHSCTTCCEEEEC---GGGHHHHHHSCCC
T ss_pred CcceecC-----CCCcCCcccCHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHhccCeEEEEeC---ccHHHHHHhcCCC
Confidence 9999986 5789999999865 332 58899999876666544 88899987 66764 5667888
Q ss_pred cceEEEEee
Q psy13351 642 EGTLVYEIY 650 (837)
Q Consensus 642 ~GT~I~~~~ 650 (837)
+||+|.+.+
T Consensus 295 ~GT~I~~~~ 303 (307)
T 3zzh_A 295 AGTMIRRGY 303 (307)
T ss_dssp CSEEEECCC
T ss_pred CcEEEecCC
Confidence 999998764
No 61
>3c1m_A Probable aspartokinase; allosteric inhibition, threonine-sensitive, ACT DOMA amino-acid biosynthesis, threonine biosynthesis; HET: ANP; 2.30A {Methanocaldococcus jannaschii} PDB: 3c1n_A 3c20_A 2hmf_A*
Probab=99.87 E-value=3.7e-22 Score=228.86 Aligned_cols=162 Identities=22% Similarity=0.299 Sum_probs=139.3
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh---------h-hccchHHHHHHHhCCCEEEEeCCCCCC
Q psy13351 479 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF---------L-ESYIPLNAIKYLEEGKVVIFAGGIGNP 548 (837)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~---------~-~~~~~~~i~~ll~~g~VPVv~G~~G~~ 548 (837)
++..++.+.+++...++.+++.+|+.+|++++++++.+++.. + ...+.+.+..+++.|.|||++||.|.+
T Consensus 118 ~~~~~d~~~~~ge~~s~~l~~~~L~~~G~~a~~l~~~~~~i~t~~~~~~~~~~~~~~~~~i~~ll~~g~ipVv~G~~g~~ 197 (473)
T 3c1m_A 118 TPKSRDYILSFGERLSSPILSGAIRDLGEKSIALEGGEAGIITDNNFGSARVKRLEVKERLLPLLKEGIIPVVTGFIGTT 197 (473)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECHHHHTEEECSCTTSCCEEEECHHHHHHHHHHTTCEEEEESSEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEchheeEEEccCCCCccccHhhhHHHHHHHHhCCcEEEEeCCcccC
Confidence 344467777777777899999999999999999999887322 2 346678899999999999999977642
Q ss_pred ---CC------cchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHH
Q psy13351 549 ---FF------TTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCR 616 (837)
Q Consensus 549 ---~~------s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~ 616 (837)
.+ .+|++|+++|.+|+||.|++||||||||++||+.+|++++|++++++|+.+ .|..++++.|+++|.
T Consensus 198 ~~g~~~~l~rg~sD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~dP~~~~~a~~i~~is~~e~~~l~~~g~~~m~~~a~~~a~ 277 (473)
T 3c1m_A 198 EEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAM 277 (473)
T ss_dssp TTSCEEECCTTTHHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTCTTCCBCSEEEHHHHHHHHHTTCTTSCGGGHHHHH
T ss_pred CCCCEEEeCCCChHHHHHHHHHHcCCCEEEEeeCCCcceeCCCCCCCCCeEecccCHHHHHHHHhcCCcchHHHHHHHHH
Confidence 11 499999999999999999999999999999999999999999999999877 577788889999999
Q ss_pred hCCCCEEEEEccCcchHHHHHcCCccceEEEEe
Q psy13351 617 DQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEI 649 (837)
Q Consensus 617 ~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~ 649 (837)
++|+|++|+|+++|+ ..||+|.++
T Consensus 278 ~~gi~v~I~~~~~~~---------~~GT~i~~~ 301 (473)
T 3c1m_A 278 EKGIPILVKNTFEPE---------SEGTLITND 301 (473)
T ss_dssp HHTCCEEEEETTSTT---------SCCEEEESC
T ss_pred HcCCEEEEEecCCCC---------CceEEEecc
Confidence 999999999999884 579999875
No 62
>2cdq_A Aspartokinase; aspartate kinase, amino acid metabolism, ACT domain, alloste S-adenosylmethionine, lysine, allosteric effector, plant; HET: TAR SAM LYS; 2.85A {Arabidopsis thaliana} SCOP: c.73.1.3 d.58.18.10 d.58.18.10
Probab=99.87 E-value=6.6e-22 Score=227.12 Aligned_cols=267 Identities=18% Similarity=0.222 Sum_probs=178.2
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhhhh---------cc----chHHHHH-HHhCCCEEEEeCC
Q psy13351 479 DRSTADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLE---------SY----IPLNAIK-YLEEGKVVIFAGG 544 (837)
Q Consensus 479 ~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~~~---------~~----~~~~i~~-ll~~g~VPVv~G~ 544 (837)
++...+.+.+.+...++.+++.+|..+|++++++++.+++.... .. ....+.. +++.|.|||++||
T Consensus 136 ~~r~~d~l~s~GE~~s~~ll~~~L~~~Gi~A~~l~~~~~~l~t~~~~~~~~i~~~~~~~~~~~l~~~Ll~~g~IpVv~Gf 215 (510)
T 2cdq_A 136 TLRTRDYLVSFGECLSTRIFAAYLNTIGVKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGF 215 (510)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEECGGGTTCEECSCSTTCCBCTTHHHHHHHHHHHHHHHSCCEEEEESS
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEhhHeeEEEecCCCccchhhHHHHHHHHHHHHHHHhCCcEEEEeCc
Confidence 34445666666666689999999999999999999998732210 11 1234443 6689999999998
Q ss_pred CCC-C---CCc------chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHH
Q psy13351 545 IGN-P---FFT------TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTA 611 (837)
Q Consensus 545 ~G~-~---~~s------~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~A 611 (837)
.|. + .++ +|++|+++|.+|+||.+++||||||||++||+.+|+|++|++++++|+.+ +|.+++++.|
T Consensus 216 ~g~~~~~g~ittlgrGgsD~tAa~lA~~l~Ad~l~i~TDVdGVytaDPr~v~~A~~I~~Is~~E~~ela~~Ga~vmh~~a 295 (510)
T 2cdq_A 216 LGKGWKTGAVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAELAYFGAQVLHPQS 295 (510)
T ss_dssp EEEETTTCCEEECCTTHHHHHHHHHHHHHTCSEEEEEESSSSSBSSCTTTCTTCCBCCEEEHHHHHHHHHHHSSCCCHHH
T ss_pred cccCCCCCceEEeCCCChHHHHHHHHHHcCCCEEEEEeCCCCcCCCCCCCCCCCEEecEeCHHHHHHHHhcCcchhHHHH
Confidence 763 2 122 89999999999999999999999999999999999999999999999877 6899999999
Q ss_pred HHHHHhCCCCEEEEEccCcchHHHHHcCCccceEEEEeee---hhh------hh--hhhhHHHhHHHHHHHHHHHHHhhh
Q psy13351 612 FSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIYI---MII------SD--IKKNTKQKMLNTIKILKENLKKVR 680 (837)
Q Consensus 612 a~~a~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~~---~v~------~~--i~~~~~~~m~~~i~~~~~~l~~ir 680 (837)
+++|.++|+|++|.|+++|+ ..||+|.++.. ..+ +. .+.-....|......+.+=|..+.
T Consensus 296 ~~~a~~~gIpv~I~n~~~p~---------~~GT~I~~~~~~~~~~v~gIa~~~~~~~I~i~~~~m~~~~g~~~~if~~la 366 (510)
T 2cdq_A 296 MRPAREGEIPVRVKNSYNPK---------APGTIITKTRDMTKSILTSIVLKRNVTMLDIASTRMLGQVGFLAKVFSIFE 366 (510)
T ss_dssp HHHHHHHTCCEEEEETTSTT---------SCCEEEESCCCCTTCCEEEEEEEEEEEEEEEECGGGTTCTTHHHHHHHHHH
T ss_pred HHHHHHCCCeEEEEccCcCC---------CCCeEEeccccccccccccccccCCeEEEEEEcCCCCCcccHHHHHHHHHH
Confidence 99999999999999999884 57999987521 100 00 000001123322333333444444
Q ss_pred cCCCCcccc----ceeEEEeccccc---------------ccceeeeeeccCC-ceEEEecC---CcccHHHHHHHHHhc
Q psy13351 681 TGRANIGML----DNIQVKYHEHLT---------------KLLKIANITLFNS-HTISIQPF---EKEMSSIIKKAINEA 737 (837)
Q Consensus 681 tgr~~p~~l----d~i~V~~~g~~~---------------~L~~lA~v~~~~~-~~l~i~~~---d~~~~~~I~kaI~~s 737 (837)
.-..+.+++ .+|.+-.+.... .|.....|.+.+. ..+.|--. -+.....+.+|+.++
T Consensus 367 ~~~I~vd~I~sse~sis~~v~~~~~~~~~~~~~~l~~~~~el~~~~~v~~~~~~a~VsiVG~m~~~~Gvaa~~f~aL~~~ 446 (510)
T 2cdq_A 367 ELGISVDVVATSEVSISLTLDPSKLWSRELIQQELDHVVEELEKIAVVNLLKGRAIISLIGNVQHSSLILERAFHVLYTK 446 (510)
T ss_dssp HTTCCEEEEEEETTEEEEEECCGGGSSSCCCHHHHHHHHHHHTTTSEEEEEEEEEEEEEEECGGGHHHHHHHHHHHHHHH
T ss_pred HcCCcEEEEEeCCCeEEEEEechHhhhhhHHHHHHHHHHHHhCCCCeEEEeCCcEEEEEEEECCCChhHHHHHHHHHHHC
Confidence 455666666 334443332210 0222234444321 12222111 245567788889888
Q ss_pred CCCccceecC---CeeEEeC
Q psy13351 738 NLGLNPTIQG---NIIYVSI 754 (837)
Q Consensus 738 ~l~~~p~~~~---~~i~v~i 754 (837)
+.|+.-...| ..|.+.|
T Consensus 447 ~InI~mIsqGsSei~Is~vV 466 (510)
T 2cdq_A 447 GVNVQMISQGASKVNISFIV 466 (510)
T ss_dssp TCCCSEEEECTTCSEEEEEE
T ss_pred CCCEEEEEecCCcceEEEEE
Confidence 8887766654 3556555
No 63
>4ab7_A Protein Arg5,6, mitochondrial; transferase, arginine biosynthesis, amino acid kinase domain GCN5-related acetyltransferase, GNAT; HET: NLG; 3.25A {Saccharomyces cerevisiae} PDB: 3zzi_A*
Probab=99.86 E-value=6.4e-22 Score=223.16 Aligned_cols=215 Identities=16% Similarity=0.165 Sum_probs=164.0
Q ss_pred HHHHHHHhhhhhhhccCCCccccccchhhhhhhhHHhhhcCceEEEEeCcchhhhccccc---cc----C---CCcchHH
Q psy13351 415 SLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNK---IQ----N---IDRSTAD 484 (837)
Q Consensus 415 ~~~v~k~~~~gs~~~~g~~~~i~~~~i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~~---~~----~---~~~~~~~ 484 (837)
+.+|+|. |++.+.+ .+++++++|+.+...|.++|||||||......... .. + .++.+++
T Consensus 49 ~~iVIK~---GGsv~~~--------~l~~la~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~tl~ 117 (464)
T 4ab7_A 49 QFAVIKV---GGAIISD--------NLHELASCLAFLYHVGLYPIVLHGTGPQVNGRLEAQGIEPDYIDGIRITDEHTMA 117 (464)
T ss_dssp CCEEEEE---CHHHHHH--------CHHHHHHHHHHHHHTTCCCEEEECCCHHHHHHHHHTTCCCCEETTEECBCHHHHH
T ss_pred ceEEEEE---CHHHhhc--------hHHHHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHcCCCccccCCeecCCHHHHH
Confidence 4568884 4444432 26899999999999999999999999554433222 11 1 3667788
Q ss_pred HHHHHHHHHHHHHHHHHHHHcCCceeEeehhch----------h--hhhhccchHHHHHHHhCCCEEEEeCC----CCCC
Q psy13351 485 YMGMLATIINSLALFDILNKSGIISHVMSAISI----------E--KFLESYIPLNAIKYLEEGKVVIFAGG----IGNP 548 (837)
Q Consensus 485 ~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~----------~--~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~~ 548 (837)
.+.|+.. ..+..++..|.++|++++++++.-+ + ..+..++++.+..+|+.|.|||++|. .|..
T Consensus 118 vv~mv~~-~vn~~lv~~L~~~G~~Avglsgg~~~a~~~~~~d~g~vG~I~~v~~~~I~~lL~~G~IPVi~~~g~~~~G~~ 196 (464)
T 4ab7_A 118 VVRKCFL-EQNLKLVTALEQLGVRARPITSGVFTADYLDKDKYKLVGNIKSVTKEPIEASIKAGALPILTSLAETASGQM 196 (464)
T ss_dssp HHHHHHH-HHHHHHHHHHHHTTCCEEEECSSSEEEEESCTTTTBSBEEEEEECCHHHHHHHHTTCEEEEESEEECTTCBE
T ss_pred HHHHHHH-HHHHHHHHHHHhCCCCeEEECCCcEEEEecCccccCCcCcccccCHHHHHHHHHCCcEEEEcCCcCCCCCCE
Confidence 8888765 4557788999999999999986221 0 01345788999999999999999983 2221
Q ss_pred -CCcchHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHH-HHH-------hccccchHHHHHHHHhC-
Q psy13351 549 -FFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDE-VIS-------KKLEIMDSTAFSFCRDQ- 618 (837)
Q Consensus 549 -~~s~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e-~~~-------~G~~v~~~~Aa~~a~~~- 618 (837)
++++|++|+.+|.+|+||+|+++|||||||++ |++++|++++.+| +.. .|||.+|+.|++.|.+.
T Consensus 197 ~ni~~D~~Aa~lA~~L~Ad~Li~lTdV~GV~~~-----~~~~lI~~it~~e~~~~li~~~~~tgGM~pKl~aa~aa~~~v 271 (464)
T 4ab7_A 197 LNVNADVAAGELARVFEPLKIVYLNEKGGIING-----STGEKISMINLDEEYDDLMKQSWVKYGTKLKIREIKELLDYL 271 (464)
T ss_dssp EECCHHHHHHHHHHHHCCSEEEEEESSCSEECT-----TTCCEECEEEHHHHHHHHHTCSSCCHHHHHHHHHHHHHHTTS
T ss_pred EEecHHHHHHHHHHHcCCCEEEEEecccccccC-----CCCcCCcccCHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhc
Confidence 36799999999999999999999999999986 4688999999865 332 47799999988777764
Q ss_pred --CCCEEEEEccCcchHH-HHHcCCccceEEEEe
Q psy13351 619 --KLPIRVFSIIKSGALK-RVIEGKNEGTLVYEI 649 (837)
Q Consensus 619 --gi~v~I~ng~~~~~i~-~al~Ge~~GT~I~~~ 649 (837)
|.+++|++ ++.+. .++.++.+||+|.++
T Consensus 272 ~~g~~v~I~~---~~~ll~eLft~~g~GT~I~~~ 302 (464)
T 4ab7_A 272 PRSSSVAIIN---VQDLQKELFTDSGAGTMIRRG 302 (464)
T ss_dssp CTTCEEEEEE---STTHHHHTTSSSTTSEEEECC
T ss_pred ccCcEEEEec---ChHHHHHHhcCCCCceEEecC
Confidence 78899987 45555 556788899999987
No 64
>3s6g_A N-acetylglutamate kinase / N-acetylglutamate SYNT; synthase, transferase; HET: COA; 2.67A {Maricaulis maris} PDB: 3s7y_A 3s6h_A*
Probab=99.85 E-value=1.2e-21 Score=221.43 Aligned_cols=203 Identities=14% Similarity=0.096 Sum_probs=159.7
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhcccc---ccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGISN---KIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~~~---~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++++++|+.+...|.++|||||||+....... ... + .++..++.+.++.. ..+..|++.|.++|++++
T Consensus 74 l~~~a~dI~~l~~~G~~~VvVHGgG~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv~~~lg-~vn~~lv~aL~~~G~~Av 152 (460)
T 3s6g_A 74 LPGLASALAFLQTVGLTPVVVHGGGPQLDAALEAADIPTERVDGLRVTRDEAMPIIRDTLT-QANLALVDAIRDAGGRAA 152 (460)
T ss_dssp HHHHHHHHHHHHHHTCCCEEEECCHHHHHHHHHHHSCCCCCCSSSCCBCTTTHHHHHHHHH-HHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCce
Confidence 699999999999999999999999854433221 111 1 36677888877764 556667779999999999
Q ss_pred Eeehhch--h----------hhhhccchHHHHHHHhCCCEEEEeCC----CCCC-CCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 511 VMSAISI--E----------KFLESYIPLNAIKYLEEGKVVIFAGG----IGNP-FFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 511 ~l~~~~~--~----------~~~~~~~~~~i~~ll~~g~VPVv~G~----~G~~-~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
++++..+ . ..+..++.+.+..+|+.|.|||+++. .|.. ++++|++|+.+|.+|+||+|+++||
T Consensus 153 ~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~p~g~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTd 232 (460)
T 3s6g_A 153 AVPRGVFEADIVDADKLGRVGEPRHIHLDLVGSAARAGQAAILACLGETPDGTLVNINADVAVRALVHALQPYKVVFLTG 232 (460)
T ss_dssp EECSSSEEEEESCTTTTBSEEEEEEECCHHHHHHHHTTCEEEEECEEECTTCCEEEECHHHHHHHHHHHHCCSEEEEECS
T ss_pred EEecCeEEEEEecCcccCccCcceEEcHHHHHHHHHCCcEEEEECceECCCCcEEecCHHHHHHHHHHHcCCCEEEEEeC
Confidence 9998332 1 01345788999999999999999962 1221 3569999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHH-HHHH-------hccccchHHHHHHHHhCCCCEEEEEccCcchHHH-HHcCCccce
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFD-EVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR-VIEGKNEGT 644 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~-e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~-al~Ge~~GT 644 (837)
|||||++ ++++|++++.. ++.. .|+|.+++.|+..|.+.+.+++++++..|+.+.. ++.++.+||
T Consensus 233 v~Gv~~~------~~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~v~iv~g~~~~~Ll~eLft~~g~GT 306 (460)
T 3s6g_A 233 TGGLLDE------DGDILSSINLATDFGDLMQADWVNGGMRLKLEEIKRLLDDLPLSSSVSITRPSELARELFTHAGSGT 306 (460)
T ss_dssp SCSCBCT------TSSBCCEEEHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHTSCTTCEEEEECGGGHHHHHHSSCCSSE
T ss_pred CccccCC------CCeecceeCcHHHHHHHHhcCCCCCcHHHHHHHHHHHHhCCCcEEEEEeCCCcHHHHHHhcCCCCce
Confidence 9999984 46789999875 5433 5889999999988888544789999999999875 667888999
Q ss_pred EEEEee
Q psy13351 645 LVYEIY 650 (837)
Q Consensus 645 ~I~~~~ 650 (837)
+|.+.+
T Consensus 307 ~i~~~e 312 (460)
T 3s6g_A 307 LIRRGE 312 (460)
T ss_dssp EEECCC
T ss_pred EEEcCC
Confidence 999873
No 65
>2j0w_A Lysine-sensitive aspartokinase 3; feedback inhibition, allosteric regulation, ACT domain, transferase, amino acid biosynthesis; HET: ADP; 2.5A {Escherichia coli} SCOP: c.73.1.3 d.58.18.10 d.58.18.10 PDB: 2j0x_A*
Probab=99.85 E-value=4.8e-21 Score=217.54 Aligned_cols=263 Identities=17% Similarity=0.205 Sum_probs=172.9
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhhh------hhcc--c----h-HHHHHHHhCCCEEEEeCCCC-
Q psy13351 481 STADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKF------LESY--I----P-LNAIKYLEEGKVVIFAGGIG- 546 (837)
Q Consensus 481 ~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~~------~~~~--~----~-~~i~~ll~~g~VPVv~G~~G- 546 (837)
...+.+.+.+...++.+++.+|..+|++++++++.++-.. .... + . ..+..+++ +.|||++|+.|
T Consensus 109 ~~~d~l~s~Ge~~s~~l~~~~L~~~Gi~a~~l~~~~~l~t~~~~~~~~~~~~~~~~~~~~~l~~l~~-~~IpVv~Gf~g~ 187 (449)
T 2j0w_A 109 ALTDELVSHGELMSTLLFVEILRERDVQAQWFDVRKVMRTNDRFGRAEPDIAALAELAALQLLPRLN-EGLVITQGFIGS 187 (449)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSCCEEECCGGGTCBBCSCTTSCCBCHHHHHHHHHHHTHHHHH-HSEEEEESSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCcEEEEchHHheeecCCCCCccccHhHhHHHHHHHHHHHhc-CCEEEEeCCeee
Confidence 4445555555666888999999999999999999887111 0111 0 1 23344444 45999999877
Q ss_pred CC-C-C---c---chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHH
Q psy13351 547 NP-F-F---T---TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFC 615 (837)
Q Consensus 547 ~~-~-~---s---~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a 615 (837)
++ + . . +|++|+++|.+|+||.+++||||||||++||+.+|++++|++++++|+.+ .|.+++++.|+++|
T Consensus 188 ~~~g~~ttl~rGgsD~~Aa~lA~~l~Ad~l~i~TDVdGv~~~DPr~~~~a~~i~~is~~e~~ela~~G~kvlh~~a~~~a 267 (449)
T 2j0w_A 188 ENKGRTTTLGRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGAKVLHPATLLPA 267 (449)
T ss_dssp CTTSCEEECCTTHHHHHHHHHHHHTTCSEEEEEESSSSEESSCTTTCTTCCEESEEEHHHHHHHHHTTCTTSCTTTHHHH
T ss_pred CCCCCEEEeCCCChHHHHHHHHHHCCCCEEEEccccCCcCcCCCCCCCCCEEccCccHHHHHHHHhcCCccchHHHHHHH
Confidence 33 2 1 2 79999999999999999999999999999999999999999999999887 58899999999999
Q ss_pred HhCCCCEEEEEccCcchHHHHHcCCccceEEEEee--ehhh------hh--hhhhHHHhHHHHHHHHHHHHHhhhcCCCC
Q psy13351 616 RDQKLPIRVFSIIKSGALKRVIEGKNEGTLVYEIY--IMII------SD--IKKNTKQKMLNTIKILKENLKKVRTGRAN 685 (837)
Q Consensus 616 ~~~gi~v~I~ng~~~~~i~~al~Ge~~GT~I~~~~--~~v~------~~--i~~~~~~~m~~~i~~~~~~l~~irtgr~~ 685 (837)
.++|+|++|.|+++|+ .+||+|.++. ...+ +. .+.-....|......+.+=|..+..-..+
T Consensus 268 ~~~gi~v~I~~~~~p~---------~~GT~I~~~~~~~~~v~gIa~~~~~~~i~i~~~~m~~~~g~~~~if~~l~~~~i~ 338 (449)
T 2j0w_A 268 VRSDIPVFVGSSKDPR---------AGGTLVCNKTENPPLFRALALRRNQTLLTLHSLNMLHSRGFLAEVFGILARHNIS 338 (449)
T ss_dssp HHHTCCEEEEESSCTT---------SCCEEEESCCSSCCSEEEEEEEEEEEEEEECCCSCSCHHHHHHHHTTTTTTTTCC
T ss_pred HHCCCeEEEEECCCCC---------CCeeEEecccccccccccceeeCCEEEEEEEecCCCCccCHHHHHHHHHHHcCCC
Confidence 9999999999999884 5799998752 1111 01 11111122444445555555666666777
Q ss_pred ccccc----eeEEEeccccc-------c-------cceeeeeeccCC-ceEEEecC----CcccHHHHHHHHHhcCCCcc
Q psy13351 686 IGMLD----NIQVKYHEHLT-------K-------LLKIANITLFNS-HTISIQPF----EKEMSSIIKKAINEANLGLN 742 (837)
Q Consensus 686 p~~ld----~i~V~~~g~~~-------~-------L~~lA~v~~~~~-~~l~i~~~----d~~~~~~I~kaI~~s~l~~~ 742 (837)
++++. ++.+-.+.... - |..+..|.+.++ ..+.|--. .+.....+.+|+. +.|+.
T Consensus 339 vd~i~ss~~sis~~v~~~~~~~~~~~~~~~~~~~el~~~~~v~~~~~~a~vsvVG~gm~~~~gv~~~~f~aL~--~ini~ 416 (449)
T 2j0w_A 339 VDLITTSEVSVALTLDTTGSTSTGDTLLTQSLLMELSALCRVEVEEGLALVALIGNDLSKACGVGKEVFGVLE--PFNIR 416 (449)
T ss_dssp CSEEEEETTEEEEEECCCCCSSTTCCSSCHHHHHHHHHHSCEEEEEEEEEEEEEESSCTTSSSHHHHHHSSCT--TSCCC
T ss_pred EEEEEeCCCeEEEEEeccccchhhHHHHHHHHHHHhccCCeEEEeCCeEEEEEECCCccccccHHHHHHHHHh--CCCeE
Confidence 77773 24444333211 0 222344555422 22333222 2455666666663 34444
Q ss_pred ceecC---CeeEEeCC
Q psy13351 743 PTIQG---NIIYVSIP 755 (837)
Q Consensus 743 p~~~~---~~i~v~iP 755 (837)
-...| ..|.+.|+
T Consensus 417 mIsqg~Se~~Is~vV~ 432 (449)
T 2j0w_A 417 MICYGASSHNLCFLVP 432 (449)
T ss_dssp EEEESSCTTEEEEEEE
T ss_pred EEEecCCCcEEEEEEe
Confidence 44433 46666664
No 66
>3tvi_A Aspartokinase; structural genomics, ACT domains, regulatory domains, kinase transferase, PSI-2, protein structure initiative; HET: LYS; 3.00A {Clostridium acetobutylicum}
Probab=99.84 E-value=4.8e-21 Score=216.55 Aligned_cols=256 Identities=16% Similarity=0.177 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCceeEeehhchhh------hhhccchHHHHHHHhCCCEEEEeCCCCC-C--CCc--
Q psy13351 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEK------FLESYIPLNAIKYLEEGKVVIFAGGIGN-P--FFT-- 551 (837)
Q Consensus 483 ~~~~~~~~~~~~~~ll~~~L~~~gi~a~~l~~~~~~~------~~~~~~~~~i~~ll~~g~VPVv~G~~G~-~--~~s-- 551 (837)
.|.+...+..+++.+|+.+| ++.++++.++.. ....++.+.+..+++.|.|||++||.|. + .++
T Consensus 109 ~D~lls~GE~lS~~lla~~l-----~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~v~Vv~Gf~g~~~~g~~~tl 183 (446)
T 3tvi_A 109 SDYAASRGEYLNGVILAKYL-----NAEFIDAAEVIFFDKSGCFDEKKSYEKIKEKVLSCNKAVIPGFYGSSFNGDVKTF 183 (446)
T ss_dssp HHHHHHHHHHHHHHHHHHHH-----TCEECCGGGTCBBCC--CBCHHHHHHHHHHHTTTCSSEECCCSEEECTTSCEEEC
T ss_pred HHHHHHhHHHHHHHHHHHHh-----cceeECHHHheeeCCCCceehHhhHHHHHHHHhcCCeEEeeCceecCCCCCeEEE
Confidence 44444444444788888886 466666766532 2334466789999999999999998763 2 222
Q ss_pred ----chHHHHHHHHHcCCcEEEEeeccCccccCCCCCCCCceeccccCHHHHHH---hccccchHHHHHHHHhCCCCEEE
Q psy13351 552 ----TDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS---KKLEIMDSTAFSFCRDQKLPIRV 624 (837)
Q Consensus 552 ----~D~lAa~lA~~L~Ad~liilTDVdGVy~~dP~~~~~a~~I~~is~~e~~~---~G~~v~~~~Aa~~a~~~gi~v~I 624 (837)
+|++|+++|.+|+||.+++||||||||++||+.+|+|++|++++++|+.+ .|.+++|+.|+++|.++|+|++|
T Consensus 184 ~rGgsD~~Aa~lA~~l~A~~~~i~TDVdGvyt~dP~~~~~a~~i~~is~~e~~ela~~Ga~vl~~~a~~~a~~~~ipi~i 263 (446)
T 3tvi_A 184 SRGGSDVTGSIISAGVNADLYENWTDVSGFLMADPRIVENPKTISKISYKELRELSYMGATVLHEEAIFPVKDSGIPINI 263 (446)
T ss_dssp SSSTTHHHHHHHHHHTTCSEEEEEESSSSCBSSCTTTSSSCCBCSEEEHHHHHHTTTC----CCSTTTHHHHHSSCCEEE
T ss_pred ccCCchHHHHHHHHHcCCCEEEEEeCCCccCCCCCCcCCCCeEcceeCHHHHHHHHhCCCCcchHHHHHHHHHcCCeEEE
Confidence 89999999999999999999999999999999999999999999999988 68889999999999999999999
Q ss_pred EEccCcchHHHHHcCCccceEEEEeee---h--hh------hhh--hhhHHHhHHHHHHHHHHHHHhhhcCCCCccccc-
Q psy13351 625 FSIIKSGALKRVIEGKNEGTLVYEIYI---M--II------SDI--KKNTKQKMLNTIKILKENLKKVRTGRANIGMLD- 690 (837)
Q Consensus 625 ~ng~~~~~i~~al~Ge~~GT~I~~~~~---~--v~------~~i--~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ld- 690 (837)
.|+++|+ ..||+|.++.. . .+ +.+ +.-....|......+.+=|..+..-..+++++.
T Consensus 264 ~~~~~p~---------~~GT~i~~~~~~~~~~~~v~gIa~~~~~~~i~i~~~~~~~~~g~~~~if~~l~~~~i~vd~i~~ 334 (446)
T 3tvi_A 264 KNTNKPS---------DPGTLILSDTHKEINLGTITGIAGKKNFTVIAIEKALLNSEVGFCRKILSILEMYGVSFEHMPS 334 (446)
T ss_dssp EETTBTT---------SCCEEEECTTTSCCCTTCCCEEEEEEEEEEEEEECTTGGGSTTHHHHHHHHHHTTTCCEEEBCE
T ss_pred ecCCCCC---------CCCEEEecCCcccccCcceEEEEecCCEEEEEEEecCCCccHHHHHHHHHHHHHcCCcEEEEec
Confidence 9999884 57999997621 1 11 000 000011233333333444444445555655543
Q ss_pred ---eeEEEecccccc------c---------------ceeeeeeccCCceEEEecCCcccHHHHHHHHHhcCCCccceec
Q psy13351 691 ---NIQVKYHEHLTK------L---------------LKIANITLFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQ 746 (837)
Q Consensus 691 ---~i~V~~~g~~~~------L---------------~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s~l~~~p~~~ 746 (837)
++.+-+...... + ..+|-|++.+..+- --|.....+.+|+.+.+.|+.-..+
T Consensus 335 ~~~~is~~V~~~d~~~~~~~~~~el~~~~~~~~v~v~~~vA~VSvVG~gM~----~~~Gvaarif~aLa~~~InI~mIsq 410 (446)
T 3tvi_A 335 GVDSVSLVIEDCKLDGKCDKIIEEIKKQCNPDSIEIHPNMALVATVGTGMA----KTKGIANKIFTALSKENVNIRMIDQ 410 (446)
T ss_dssp ETTEEEEEEEHHHHTTTHHHHHHHHHHHSCCSEEEEEEEEEEEEEECGGGS----SCTTHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCEEEEEEecchHHHHHHHHHHHHHHhcCCCcEEEeCCeEEEEEECCCcc----CChhHHHHHHHHHHHCCCCEEEEEe
Confidence 344433222111 1 12333333332211 1377888999999998888766553
Q ss_pred ---CCeeEEeCCC
Q psy13351 747 ---GNIIYVSIPP 756 (837)
Q Consensus 747 ---~~~i~v~iP~ 756 (837)
...|.+.|+.
T Consensus 411 gtSei~Is~vV~~ 423 (446)
T 3tvi_A 411 GSSEINVIVGVET 423 (446)
T ss_dssp CSCTTEEEEEEEG
T ss_pred cCCCceEEEEEcH
Confidence 3467776653
No 67
>3s6k_A Acetylglutamate kinase; synthase, transferase; 2.80A {Xanthomonas campestris PV}
Probab=99.82 E-value=2.4e-21 Score=219.27 Aligned_cols=203 Identities=15% Similarity=0.144 Sum_probs=157.1
Q ss_pred hhhhhhhhHHhhhcCceEEEEeCcchhhhcc---ccccc----C---CCcchHHHHHHHHHHHHHHHHHHHHHHcCCcee
Q psy13351 441 IKNIISEISEIVSCGIELAIVIGGGNICRGI---SNKIQ----N---IDRSTADYMGMLATIINSLALFDILNKSGIISH 510 (837)
Q Consensus 441 i~~la~~I~~l~~~G~~vVIVhGGG~~~~~~---~~~~~----~---~~~~~~~~~~~~~~~~~~~ll~~~L~~~gi~a~ 510 (837)
+++++++|+.+...|.++|||||||+..... ..... + .++..++.+.++.. ..+..|++.|.++|++++
T Consensus 77 l~~va~dI~~l~~~G~~~VvVHGgg~~i~~~l~~~gi~~~f~~G~RvTd~~~l~vv~~~~g-~vn~~Lv~aL~~~G~~Av 155 (467)
T 3s6k_A 77 LEALTSSLSFLQEVGLTPIVLHGAGPQLDAELSAAGIEKQTVNGLRVTSPHALAIVRKVFQ-ASNLKLVEALQQNGARAT 155 (467)
T ss_dssp CHHHHHHHHHHHTTSCCCCCCCCCCHHHHHHHHTTSCCCCCCSSSCCBCHHHHHHHHHHHH-HHHHHHHHHHHHHTCCBC
T ss_pred HHHHHHHHHHHHHCCCcEEEEECCChHHHHHHHHcCCCccccCCccCCCHHHHHHHHHHHH-HHHHHHHHHHHhCCCCce
Confidence 6899999999999999999999999544332 22221 1 25566777777664 556667779999999999
Q ss_pred Eeehhch--h----------hhhhccchHHHHHHHhCCCEEEEeC--C--CCCC-CCcchHHHHHHHHHcCCcEEEEeec
Q psy13351 511 VMSAISI--E----------KFLESYIPLNAIKYLEEGKVVIFAG--G--IGNP-FFTTDTTAALRAAEIKAEIILKATK 573 (837)
Q Consensus 511 ~l~~~~~--~----------~~~~~~~~~~i~~ll~~g~VPVv~G--~--~G~~-~~s~D~lAa~lA~~L~Ad~liilTD 573 (837)
++++..+ . ..+..++.+.+..+|+.|.|||+++ . .|.. ++++|++|+.+|.+|+||+|+++||
T Consensus 156 ~lsg~~~~a~~~~~~d~g~~G~I~~v~~~~i~~lL~~g~IpVi~pvg~~~~G~~~~i~~D~~Aa~lA~~L~Ad~LiilTd 235 (467)
T 3s6k_A 156 SITGGVFEAEYLNRDTYGLVGEVKAVNLAPIEASLQAGSIPVITSLGETPSGQILNVNADFAANELVQELQPYKIIFLTG 235 (467)
T ss_dssp CCCSSSBCCCBSCSSSSBSBBCCCCBCCHHHHTHHHHTCBCCCCSCCCCSSSCCCBCCHHHHHHHHHHHHCCSSCCCCCS
T ss_pred EEcCccEEEEeccCcccCccceEEEEcHHHHHHHHHCCCEEEEECceECCCCcEEecCHHHHHHHHHHhcCCCEEEEEec
Confidence 9988433 1 1144578899999999999999994 2 2222 4669999999999999999999999
Q ss_pred cCccccCCCCCCCCceeccccCHH-HHHH-------hccccchHHHHHHHHhCCCCEEEEEccCcchHHH-HHcCCccce
Q psy13351 574 VDGIYNSDPNKCLSAIIYKKITFD-EVIS-------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKR-VIEGKNEGT 644 (837)
Q Consensus 574 VdGVy~~dP~~~~~a~~I~~is~~-e~~~-------~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~-al~Ge~~GT 644 (837)
|||||++| +++|++++.. ++.. .|+|.+++.|+..|.+.+.+++++++..|+.+.. ++.++.+||
T Consensus 236 v~Gv~~~~------~~lI~~i~~~~e~~~l~~~~~~tGGM~~Kl~aa~~a~~gv~~~~iv~g~~~~~Ll~eLft~~g~GT 309 (467)
T 3s6k_A 236 TGGLLDAE------GKLIDSINLSTEYDHLMQQPWINGGMRVKIEQIKDLLDRLPLESSVSITRPADLAKELFTHKGSGT 309 (467)
T ss_dssp SCSCCCSS------CCCCCCCCTTTTTHHHHTSSSCCSHHHHHHHHHHHHHTTSCSSCCBCCCCTTTHHHHHHSSCTTSC
T ss_pred ccceeCCC------CCCccccChHHHHHHHHhcCCCCCchHHHHHHHHHHHhCCCcEEEEEeCCchHHHHHHhcCCCcce
Confidence 99999853 5677777763 3322 5889999999998888555789999999999875 567888999
Q ss_pred EEEEee
Q psy13351 645 LVYEIY 650 (837)
Q Consensus 645 ~I~~~~ 650 (837)
+|.+.+
T Consensus 310 ~i~~~e 315 (467)
T 3s6k_A 310 LVRRGE 315 (467)
T ss_dssp CBCCCC
T ss_pred EEeCCC
Confidence 999873
No 68
>2cp9_A EF-TS, EF-TSMT, elongation factor TS, mitochondrial; UBA, structural genomics, human, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.2
Probab=99.50 E-value=8.3e-15 Score=117.88 Aligned_cols=55 Identities=29% Similarity=0.335 Sum_probs=52.0
Q ss_pred ccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCC
Q psy13351 216 AKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDG 270 (837)
Q Consensus 216 g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG 270 (837)
...|++||++||++|++||+||.++|||+++|++|||++|++++.+|++++++.|
T Consensus 10 ~~~Vk~LRe~TGag~~dcKkAL~e~~GDi~~Ai~~Lr~kg~~~a~kKA~k~~~~~ 64 (64)
T 2cp9_A 10 KELLMKLRRKTGYSFVNCKKALETCGGDLKQAEIWLHKEAQKEGWSKAASGPSSG 64 (64)
T ss_dssp CHHHHHHHHHHCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHCCSSSCCCCCCC
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHHHhHHHHHHHHhccCCCC
Confidence 4578999999999999999999999999999999999999999999999998765
No 69
>1xb2_B EF-TS, elongation factor TS, mitochondrial, EF-TSMT; protein-protein complex, translation; HET: MSE; 2.20A {Bos taurus} SCOP: a.5.2.2 d.43.1.1 d.43.1.1
Probab=99.36 E-value=7.4e-13 Score=139.96 Aligned_cols=110 Identities=15% Similarity=0.214 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHhhh-hhhhhcccccC--CCeeEEEEe-------------CCEEEEEEEecCCchhccchHHHHHHHHHH
Q psy13351 244 LSKAEEILRIKLGK-KILNISNRNAK--DGVIAIYIS-------------EKVGSLVEINCETDFVAKNNEFIKFSKKIA 307 (837)
Q Consensus 244 ~~~A~~~Lr~~g~~-~a~kk~~r~~~--eG~i~~y~~-------------~~~g~iveln~etdfva~n~~f~~la~~ia 307 (837)
++.++..+--+=.. -.-+++.++.. +|.|++|+| ||+||||+++++.+. +.+.+++++||
T Consensus 140 v~d~i~~~ia~iGEni~lrR~~~~~~~~~~~v~~Y~H~~~~~~~~~~~~~GkigvlV~l~~~~~~----~~l~~~ak~iA 215 (291)
T 1xb2_B 140 LKDQLALAIGKLGENMILKRAAWVKVPAGFYVGSYVHGAMHSPSLHNLVLGKYGALVICETSELK----ANLADLGRRLG 215 (291)
T ss_dssp HHHHHHHHHHHHCSCEEEEEEEEEECCTTEEEEEEEESCCCCTTSTTCEEESEEEEEEEECCSCG----GGCHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHhcCCCCCeEEEEECCCcccccccccCCCcEEEEEEEecCCcc----chHHHHHHHHH
Confidence 77777666554222 22344444443 489999999 789999999986431 22457999999
Q ss_pred HHHHhcCCCChhh-------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 308 KLITENTPINLDQ-------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 308 ~~iaa~~p~~~~~-------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
|||||++|.++++ |+|+|++|+++||+|++++ .+++|++|+||++|||+.
T Consensus 216 mHIaA~~P~~l~~~~v~~gf~~E~~Ll~Q~fv~D~~~tV~~~l~~------~~i~V~~F~RfevGEgie 278 (291)
T 1xb2_B 216 QHVVGMAPLSVGSLDDEPGGEAETKMLSQPYLLDPSITLGQYVQP------HGVSVVDFVRFECGEGED 278 (291)
T ss_dssp HHHHHHCCSBCCCTTSCCCGGGCCBGGGSBCTTCTTSBHHHHHGG------GTCEEEEEEEEETTCC--
T ss_pred HHHHhcCCcccCHHHhhccchhheeeccCcccCCCCcCHHHHHHh------CCCEEEEEEEEEecCccc
Confidence 9999999998752 7899999999999999985 379999999999999864
No 70
>1tfe_A Elongation factor TS; 1.70A {Thermus thermophilus} SCOP: d.43.1.1
Probab=99.29 E-value=1.9e-12 Score=123.35 Aligned_cols=74 Identities=35% Similarity=0.585 Sum_probs=62.2
Q ss_pred eEEEEeeC-CeEEEEEEecCC-C--------hhHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhhcc
Q psy13351 361 NLISYLHD-NKIGVIVEYNGD-N--------ESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEALMK 430 (837)
Q Consensus 361 ~i~~Y~H~-~~~~~~v~~~~~-~--------~~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~~~ 430 (837)
.+++|+|+ ||+||||++++. + .+++++|||||||++|.++++++||++++++|++++..++. ..
T Consensus 5 ~v~~yiH~~gkigvlVeln~eTDFVArne~F~~la~~iAm~iaA~~p~~v~~e~vp~~~~e~E~~i~~~~~~------~~ 78 (145)
T 1tfe_A 5 IIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL------NE 78 (145)
T ss_dssp EEEEEECTTSSEEEEEEEEESCHHHHHSHHHHHHHHHHHHHHHHHCCSBSSGGGSCHHHHHHHHHHHHHHHH------TT
T ss_pred EEEEEEecCCCEEEEEEEecCCcccccchHHHHHHHHHHHHHHHcCCcccchhhCCHHHHHHHHHHHHHHHH------hc
Confidence 48999996 699999999875 2 36899999999999999999999999999999999888753 34
Q ss_pred CCCccccccc
Q psy13351 431 GDAYNINSSI 440 (837)
Q Consensus 431 g~~~~i~~~~ 440 (837)
|+|..+-+++
T Consensus 79 gKPe~i~eki 88 (145)
T 1tfe_A 79 GKPQQIAEKI 88 (145)
T ss_dssp TCCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 7887554443
No 71
>1aip_C EF-TS, elongation factor TS; nucleotide exchange, GTP-binding, complex of two elongation factors; 3.00A {Thermus thermophilus} SCOP: a.5.2.2 d.43.1.1
Probab=99.18 E-value=1.7e-11 Score=120.86 Aligned_cols=77 Identities=35% Similarity=0.565 Sum_probs=64.4
Q ss_pred CCeEEEEeeC-CeEEEEEEecCCC------h---hHHHHHHhhhhccCccccCcCcCchHHHHHHHHHHHHHHhhhhhhh
Q psy13351 359 NNNLISYLHD-NKIGVIVEYNGDN------E---SAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQLGEAL 428 (837)
Q Consensus 359 g~~i~~Y~H~-~~~~~~v~~~~~~------~---~~~~~iamhi~a~~p~~l~~~~vp~~~~~~ek~~~v~k~~~~gs~~ 428 (837)
.+-+++|+|. +++|+||++++.. + .++++|||||||++|.|+++++||++++++|++++..++.
T Consensus 57 EGlV~~~i~~~~~~gvlvEvNcETDFVArn~~F~~lakdiAMhiAA~~P~~l~~~~vp~~~ve~E~~i~~~~~~------ 130 (196)
T 1aip_C 57 EGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKERQIYIQAAL------ 130 (196)
T ss_dssp CCEEEEEECTTSSEEEEEEEECSSHHHHTSHHHHHHHHHHHHHHHHHCCSBSSSTTSCHHHHHHHHHHHHHHHH------
T ss_pred CCeEEEEEecCCCEEEEEEEecCCccccCCHHHHHHHHHHHHHHHHhCCccCChhhCCHHHHHHHHHHHHHHHH------
Confidence 3459999996 6999999998754 3 5789999999999999999999999999999999888863
Q ss_pred ccCCCccccccch
Q psy13351 429 MKGDAYNINSSII 441 (837)
Q Consensus 429 ~~g~~~~i~~~~i 441 (837)
..|+|..+-++++
T Consensus 131 ~~gKPe~i~eKiv 143 (196)
T 1aip_C 131 NEGKPQQIAEKIA 143 (196)
T ss_dssp TTTCCHHHHHHHH
T ss_pred HcCCcHHHHHHHH
Confidence 3478876665553
No 72
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.89 E-value=1.7e-09 Score=132.72 Aligned_cols=86 Identities=20% Similarity=0.233 Sum_probs=71.5
Q ss_pred hcccccCCCeeEEEEeC-CEEEEEEEecCCchhccchHHHHHHHHHHHHHHhcCCCChhh--------------------
Q psy13351 262 ISNRNAKDGVIAIYISE-KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ-------------------- 320 (837)
Q Consensus 262 k~~r~~~eG~i~~y~~~-~~g~iveln~etdfva~n~~f~~la~~ia~~iaa~~p~~~~~-------------------- 320 (837)
+..++. .|.|++|+|| ++||||++++. | .++|++|||||||++|.+++.
T Consensus 134 R~~~~~-~~~v~~Y~Hg~kigvlV~~~~~-~--------~~~ak~iAMhIaA~~P~~l~~~~vp~~~ve~E~~i~~~~a~ 203 (1289)
T 3avx_A 134 RVAALE-GDVLGSYQHGARIGVLVAAKGA-D--------EELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAM 203 (1289)
T ss_dssp EEEEEE-CSEEEEEEETTTEEEEEEEESC-C--------HHHHHHHHHHHHHHCCSBSSTTTSCTTHHHHHHHHHHHHHH
T ss_pred EEEEEE-CCEEEEEecCCeEEEEEEecCC-c--------HHHHHHHHHHHHhcCCeecchhhCCHHHHHHHHHHHHHHHH
Confidence 444444 3899999997 99999999974 2 168999999999999986443
Q ss_pred --------------------------hhcccccCCCccHHHHHHHHHHhhCCceEEEEEEEEeeCCeEE
Q psy13351 321 --------------------------LNNLKIKNNLLTVDEKCKELISRIGENIKIRRFKLFKTNNNLI 363 (837)
Q Consensus 321 --------------------------l~q~~i~d~~~tv~~~~~~~~~~~ge~i~l~rf~~~~~g~~i~ 363 (837)
++|+|++|+++||++++++. ++++++|.||++|+++.
T Consensus 204 ~~gKPe~i~eKiveGrl~Kf~~E~~Ll~Q~fv~d~~~TV~~llke~------~a~V~~FvRfEVGEGIE 266 (1289)
T 3avx_A 204 QSGKPKEIAEKMVEGRMKKFTGEVSLTGQPFVMEPSKTVGQLLKEH------NAEVTGFIRFEVGEGIE 266 (1289)
T ss_dssp HHTCCHHHHHHHHHHHHHHHHHHTBSTTSBCTTSTTSBHHHHHHTT------TCEEEEEEEEETTTTCC
T ss_pred hcCCcHHHHHHHHHHHHHhhhhhhhccCCceeecCccCHHHHHHhc------CcEEEEeeeEecccccc
Confidence 68999999999999988753 68999999999998763
No 73
>1nri_A Hypothetical protein HI0754; structural genomics, haemophilus influ PSI, protein structure initiative, midwest center for struc genomics; 1.90A {Haemophilus influenzae} SCOP: c.80.1.3
Probab=96.21 E-value=0.009 Score=64.10 Aligned_cols=105 Identities=14% Similarity=0.053 Sum_probs=51.2
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceEEccCCC-----------cchhhhhhhhhhch
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGND-----------DSAKSIALYTKGIV 210 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N~-----------~s~~si~~~~~~l~ 210 (837)
..-|++|+++...+ ..+++.|+..|.|||+|++...+| ...|++|+... +|..+..+++++|.
T Consensus 139 ~~~DvvI~IS~SG~T~~vi~al~~Ak~~Ga~~IaIT~~~~S~La~~AD~~I~~~~g~E~~~~st~~~s~ta~~~vl~~L~ 218 (306)
T 1nri_A 139 SKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSEMAEIADIAIETIVGPEILTGSSRLKSGTAQKMVLNMLT 218 (306)
T ss_dssp CTTSEEEEECTTSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHHSSEEEECCCCSCSSTTCTTTHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCEEEEEECCCCChHHHhCCEEEEcCCCCccccCcccchhHHHHHHHHHHHH
Confidence 46788888865433 346688899999999998865443 23555554331 23344457777776
Q ss_pred hhhhcc---------------------cchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 211 DAFLDA---------------------KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 211 ~ai~~g---------------------~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
.++... |...-++..|+++..+|+++|.+++|++..|+-.+.
T Consensus 219 ~~~~~~~g~~~~~~m~~~~~~n~kl~~r~~~~i~~~~~~~~~~~~~~l~~~~~~~~~a~~~~~ 281 (306)
T 1nri_A 219 TASMILLGKCYENLMVDVQASNEKLKARAVRIVMQATDCNKTLAEQTLLEADQNAKLAIMMIL 281 (306)
T ss_dssp HHHHHHTTSCBTTBCTTCCCCSHHHHHHHHHHHHHHSCCCC----------------------
T ss_pred HHHHHHccHHHHHHHhhhhhhHHHHHHHHHHHHHHHhCCCHHHHHHHHHHhCCChHHHHHHHH
Confidence 655432 112334556899999999999999999999988764
No 74
>1z96_A DNA-damage, UBA-domain protein MUD1; ubiquitin, three-helix bundle, protein transport; 1.80A {Schizosaccharomyces pombe} SCOP: a.5.2.1
Probab=95.75 E-value=0.0074 Score=43.85 Aligned_cols=32 Identities=34% Similarity=0.339 Sum_probs=28.5
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
+.+|... |.+..+|++||..++||++.|++||
T Consensus 8 i~~L~~m-Gf~~~~a~~AL~~~~~n~e~A~~~L 39 (40)
T 1z96_A 8 IAQLVSM-GFDPLEAAQALDAANGDLDVAASFL 39 (40)
T ss_dssp HHHHHHT-TCCHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHc-CCCHHHHHHHHHHcCCCHHHHHHHH
Confidence 5566665 8999999999999999999999998
No 75
>1wj7_A Hypothetical protein (RSGI RUH-015); UBA domain, ubiquitin associated domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.5.2.1
Probab=95.35 E-value=0.0092 Score=52.56 Aligned_cols=38 Identities=29% Similarity=0.262 Sum_probs=35.2
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
.|+.|.+.||++..+|+.||.++|||++.|++.|.+..
T Consensus 42 kVk~L~EmtG~seeeAr~AL~~~ngDl~~AI~~Lleg~ 79 (104)
T 1wj7_A 42 KVKQLIDITGKNQDECVIALHDCNGDVNRAINVLLEGN 79 (104)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHTSCHHHHHHHHHTCS
T ss_pred HHHHHHHhhCCCHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 47888999999999999999999999999999999864
No 76
>2g3q_A Protein YBL047C; endocytosis, solution structure, UBA domain, endocytosis/signaling protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=94.94 E-value=0.018 Score=42.56 Aligned_cols=34 Identities=29% Similarity=0.156 Sum_probs=28.6
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
+.+|.. -|.+..+|++||..++||++.|++||-.
T Consensus 8 i~~L~~-MGF~~~~a~~AL~~~~~n~e~A~~~L~~ 41 (43)
T 2g3q_A 8 VEELSG-MGFTEEEAHNALEKCNWDLEAATNFLLD 41 (43)
T ss_dssp HHHHHT-TTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCcCHHHHHHHHHc
Confidence 344444 4889999999999999999999999964
No 77
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=94.26 E-value=0.026 Score=44.42 Aligned_cols=29 Identities=7% Similarity=-0.044 Sum_probs=25.8
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|.....+++||+++|||+|.|.+||=..
T Consensus 29 MGFs~~qA~kALKat~~NvErAaDWLFSH 57 (63)
T 1wgn_A 29 MGYSYECVLRAMKKKGENIEQILDYLFAH 57 (63)
T ss_dssp HHCCHHHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 37888999999999999999999999543
No 78
>2bwb_A Ubiquitin-like protein DSK2; UBA, signaling protein; 2.3A {Saccharomyces cerevisiae} SCOP: a.5.2.1 PDB: 2bwe_A
Probab=93.69 E-value=0.052 Score=40.78 Aligned_cols=33 Identities=18% Similarity=0.091 Sum_probs=26.1
Q ss_pred hhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 219 VGELRSKTLA-PIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 219 v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
+.+|+.. |. ....+.+||..++||++.|++||-
T Consensus 11 i~~L~~M-GF~d~~~~~~AL~~~~gnv~~Ave~L~ 44 (46)
T 2bwb_A 11 LRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLL 44 (46)
T ss_dssp HHHHHHT-TCCCHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHH
Confidence 4555553 54 456789999999999999999995
No 79
>1ify_A HHR23A, UV excision repair protein RAD23 homolog A; ubiquitin associated domain, UBA domain, ubiquitin proteosome pathway, DNA binding protein; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.54 E-value=0.035 Score=42.35 Aligned_cols=33 Identities=21% Similarity=0.020 Sum_probs=28.0
Q ss_pred hhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+|-. -|.+..+|++||..++||++.|++||-.
T Consensus 13 ~~L~~-MGF~~~~a~~AL~~~~~n~e~A~e~L~~ 45 (49)
T 1ify_A 13 TEIMS-MGYERERVVAALRASYNNPHRAVEYLLT 45 (49)
T ss_dssp HHHHH-TTCCHHHHHHHHHTTTSCSHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 33433 4889999999999999999999999965
No 80
>2knz_A Ubiquilin-4; cytoplasm, endoplasmic reticulum, nucleus, phosphoprotein, protein binding; NMR {Mus musculus}
Probab=93.51 E-value=0.052 Score=42.09 Aligned_cols=35 Identities=26% Similarity=0.138 Sum_probs=29.0
Q ss_pred hhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLA-PIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|.. -|. +...|.+||..++||++.|++||-..
T Consensus 15 l~~L~~-MGF~~~~~~~~AL~~t~gnve~Ave~L~~~ 50 (53)
T 2knz_A 15 LEQLNS-MGFINREANLQALIATGGDINAAIERLLGS 50 (53)
T ss_dssp HHHHHT-TTCCCHHHHHHHHHHHTSCHHHHHHHHHHC
T ss_pred HHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHHHc
Confidence 455555 366 88999999999999999999999763
No 81
>2dna_A Unnamed protein product; ubiquitin associated domain, DSK2 protein, proteasome, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=93.37 E-value=0.054 Score=43.93 Aligned_cols=36 Identities=19% Similarity=0.161 Sum_probs=27.9
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|+..-=.....+.+||..++||++.|++||-..
T Consensus 23 l~qL~~MGF~d~~an~~AL~at~Gnve~Ave~L~~~ 58 (67)
T 2dna_A 23 MECLQAMGFVNYNANLQALIATDGDTNAAIYKLKSS 58 (67)
T ss_dssp HHHHHHHTCCCHHHHHHHHHHTTSCHHHHHHHHHHC
T ss_pred HHHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 445555333456677999999999999999999874
No 82
>2jy5_A Ubiquilin-1; UBA, alternative splicing, cytoplasm, nucleus, phosphoprotein, proteasome, signaling protein; NMR {Homo sapiens} PDB: 2jy6_B
Probab=93.19 E-value=0.064 Score=41.44 Aligned_cols=33 Identities=24% Similarity=0.175 Sum_probs=27.5
Q ss_pred hhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 219 VGELRSKTLA-PIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 219 v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
+.+|.. -|. +...|.+||..++||++.|++||-
T Consensus 16 l~~L~~-MGF~~~~~~~~AL~~t~gn~e~A~e~L~ 49 (52)
T 2jy5_A 16 LEQLSA-MGFLNREANLQALIATGGDINAAIERLL 49 (52)
T ss_dssp HHHHHH-TTCCCHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HHHHHH-cCCCCHHHHHHHHHHhCCCHHHHHHHHH
Confidence 445554 367 889999999999999999999994
No 83
>1wji_A Tudor domain containing protein 3; UBA domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=93.00 E-value=0.082 Score=42.56 Aligned_cols=35 Identities=14% Similarity=0.181 Sum_probs=29.5
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|-. -|++..+|++||..++||++.|++||-..
T Consensus 13 I~~L~~-MGF~~~~a~~AL~~~~~nve~A~e~L~~~ 47 (63)
T 1wji_A 13 LKHITE-MGFSKEASRQALMDNGNNLEAALNVLLTS 47 (63)
T ss_dssp HHHHHT-TTCCHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 333433 58899999999999999999999999875
No 84
>1wr1_B Ubiquitin-like protein DSK2; UBA domain, UBA-ubiquitin complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.1
Probab=92.93 E-value=0.07 Score=42.14 Aligned_cols=35 Identities=17% Similarity=0.059 Sum_probs=27.7
Q ss_pred chhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLA-PIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+.+|+.. |. ....+.+||..++||++.|++||-.
T Consensus 20 qi~~L~~M-GF~d~~~~~~AL~~~~gnve~Ave~L~~ 55 (58)
T 1wr1_B 20 QLRQLNDM-GFFDFDRNVAALRRSGGSVQGALDSLLN 55 (58)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34556654 43 5667899999999999999999975
No 85
>2dah_A Ubiquilin-3; UBA domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=92.78 E-value=0.077 Score=41.30 Aligned_cols=36 Identities=31% Similarity=0.217 Sum_probs=27.4
Q ss_pred hhhhhcccCCCh-HHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 219 VGELRSKTLAPI-MECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 219 v~~lr~~t~~~~-~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
+.+|+.. |..- ..+.+||..++||++.|++||-..+
T Consensus 13 l~~L~~M-GF~d~~~n~~AL~~~~Gdv~~Ave~L~~~~ 49 (54)
T 2dah_A 13 LEQLRSM-GFLNREANLQALIATGGDVDAAVEKLRQSS 49 (54)
T ss_dssp HHHHHHH-TCCCHHHHHHHHHHHTSCHHHHHHHHHHHS
T ss_pred HHHHHHc-CCCcHHHHHHHHHHcCCCHHHHHHHHHhCC
Confidence 4555553 5533 4579999999999999999998653
No 86
>2dak_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5, USP 5, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=92.63 E-value=0.061 Score=43.30 Aligned_cols=34 Identities=21% Similarity=0.085 Sum_probs=28.9
Q ss_pred hhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.+|-. -|.+..+|++||..++||++.|++||-..
T Consensus 14 ~~L~~-MGF~~~~a~~AL~~t~~nve~A~e~L~~~ 47 (63)
T 2dak_A 14 TTIVS-MGFSRDQALKALRATNNSLERAVDWIFSH 47 (63)
T ss_dssp HHHHH-HTCCHHHHHHHHHHTTSCSHHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34443 47899999999999999999999999875
No 87
>2cpw_A CBL-interacting protein STS-1 variant; ubiquitin associated domain, UBA, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.91 E-value=0.11 Score=41.90 Aligned_cols=34 Identities=26% Similarity=0.215 Sum_probs=28.8
Q ss_pred hhhhhcccCCChHHHHHHHHHhhc-cHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANG-KLSKAEEILRI 253 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~-d~~~A~~~Lr~ 253 (837)
+.+|-. -|.+..+|++||..++| |++.|++||-.
T Consensus 23 i~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewL~~ 57 (64)
T 2cpw_A 23 LDVLLS-MGFPRARAQKALASTGGRSVQTACDWLFS 57 (64)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTTSCHHHHHHHHHS
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCCHHHHHHHHHh
Confidence 444544 48999999999999998 99999999965
No 88
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=91.76 E-value=0.1 Score=47.51 Aligned_cols=29 Identities=21% Similarity=0.127 Sum_probs=27.0
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|.+...+|+||..+|||+++|++||-..
T Consensus 86 MGF~~~~a~~AL~~~~nd~erAlewL~~~ 114 (118)
T 4ae4_A 86 MGFELKDIKEVLLLHNNDQDNALEDLMAR 114 (118)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHHh
Confidence 57899999999999999999999999875
No 89
>2crn_A Ubash3A protein; compact three-helix bundle, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=91.64 E-value=0.13 Score=41.59 Aligned_cols=35 Identities=20% Similarity=0.117 Sum_probs=29.3
Q ss_pred hhhhhcccCCChHHHHHHHHHhhc-cHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANG-KLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~-d~~~A~~~Lr~~ 254 (837)
+.+|-. -|.+...|++||..++| |++.|++||-+.
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~n~~~e~A~~wL~~h 48 (64)
T 2crn_A 13 LEPLLA-MGFPVHTALKALAATGRKTAEEALAWLHDH 48 (64)
T ss_dssp HHHHHH-TSCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhC
Confidence 344444 58999999999999987 999999999875
No 90
>1whc_A RSGI RUH-027, UBA/UBX 33.3 kDa protein; UBA domain, structural genomics, riken structural genomics/proteomics initiative, unknown function; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.24 E-value=0.14 Score=41.32 Aligned_cols=35 Identities=23% Similarity=0.116 Sum_probs=29.2
Q ss_pred hhhhhcccCCChHHHHHHHHHh-hccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEA-NGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~-~~d~~~A~~~Lr~~ 254 (837)
+.+|-. -|.+...|++||..+ |||++.|++||-+.
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~~~nve~A~ewLl~~ 48 (64)
T 1whc_A 13 LESLIE-MGFPRGRAEKALALTGNQGIEAAMDWLMEH 48 (64)
T ss_dssp HHHHHT-TTCCHHHHHHHHHHHTSCCHHHHHHHHHHH
T ss_pred HHHHHH-cCCCHHHHHHHHHHhcCCCHHHHHHHHHhC
Confidence 344443 588999999999999 79999999999875
No 91
>1vg5_A RSGI RUH-014, rhomboid family protein; UBA domain, cDNA, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=91.23 E-value=0.14 Score=42.36 Aligned_cols=28 Identities=29% Similarity=0.162 Sum_probs=26.1
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
-|++..++++||..++||++.|++||-.
T Consensus 39 MGF~r~~a~~AL~~~~~nve~Ave~Ll~ 66 (73)
T 1vg5_A 39 MGFDRTQVEVALAAADDDLTVAVEILMS 66 (73)
T ss_dssp TTCCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 4789999999999999999999999975
No 92
>1vej_A Riken cDNA 4931431F19; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=91.16 E-value=0.14 Score=42.40 Aligned_cols=35 Identities=23% Similarity=0.188 Sum_probs=27.9
Q ss_pred chhhhhcccCC-ChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLA-PIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~-~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+.+|+.. |. ....+.+||..++||++.|++||-.
T Consensus 32 qi~qL~eM-GF~dr~~~~~AL~~t~Gnve~Ave~L~~ 67 (74)
T 1vej_A 32 ELEELKAL-GFANRDANLQALVATDGDIHAAIEMLLG 67 (74)
T ss_dssp HHHHHHHH-TCCCHHHHHHHHHHTTSCHHHHHHHHHT
T ss_pred HHHHHHHc-CCCcHHHHHHHHHHhCCCHHHHHHHHHh
Confidence 34556654 54 5678899999999999999999964
No 93
>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}
Probab=91.05 E-value=1.7 Score=42.52 Aligned_cols=66 Identities=15% Similarity=0.226 Sum_probs=42.0
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC-------CcceEEccCCCcchh--hhhhhhhhchhhh
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP-------DGINYVIPGNDDSAK--SIALYTKGIVDAF 213 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~-------~~i~ypIP~N~~s~~--si~~~~~~l~~ai 213 (837)
..-|++|+++...+. .+++.|+..|+|||+|++...+| ..+.+.+|.+..+.- +.-+++..|...+
T Consensus 108 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad~~l~~~~~~~~~~~~~~l~~~~~L~~~~ 186 (196)
T 2yva_A 108 HAGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQDVEIRIPSHRSARIQEMHMLTVNCLCDLI 186 (196)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTSEEEECSCSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCCEEEEeCCCChhHHHHHHHHHHHHHHHHH
Confidence 466888888765443 36688899999999999875432 334556666655543 3344445454444
No 94
>2dai_A Ubadc1, ubiquitin associated domain containing 1; UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.69 E-value=0.17 Score=43.12 Aligned_cols=35 Identities=23% Similarity=0.104 Sum_probs=29.5
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|-. -|.+...|++||..++||++.|++||-+.
T Consensus 33 i~~L~~-MGF~~~~a~~AL~~t~~nve~A~ewL~~~ 67 (83)
T 2dai_A 33 LRQLTE-MGFPENRATKALQLNHMSVPQAMEWLIEH 67 (83)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHG
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHHC
Confidence 334443 48999999999999999999999999875
No 95
>2dag_A Ubiquitin carboxyl-terminal hydrolase 5; isopeptidase T, ubiquitin specific protease 5 (USP 5), UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=90.69 E-value=0.17 Score=42.07 Aligned_cols=36 Identities=17% Similarity=0.193 Sum_probs=29.6
Q ss_pred hhhhhcccCCChHHHHHHHHHhhc-cHHHHHHHHHHHh
Q psy13351 219 VGELRSKTLAPIMECKKALIEANG-KLSKAEEILRIKL 255 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~-d~~~A~~~Lr~~g 255 (837)
+.+|-. -|.+...|++||..++| |++.|++||-+..
T Consensus 13 v~~L~~-MGF~~~~a~~AL~~t~n~~ve~A~ewL~~~~ 49 (74)
T 2dag_A 13 IIQLVE-MGFPMDACRKAVYYTGNSGAEAAMNWVMSHM 49 (74)
T ss_dssp HHHHHH-HSCCHHHHHHHHHHHTSCCHHHHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCCHHHHHHHHHhCC
Confidence 344444 48899999999999996 8999999998853
No 96
>1wiv_A UBP14, ubiquitin-specific protease 14; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=90.47 E-value=0.18 Score=41.77 Aligned_cols=35 Identities=26% Similarity=0.159 Sum_probs=29.0
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
+.+|-. -|.+..+|++||..++||++.|++||-..
T Consensus 33 v~~L~~-MGF~~~~a~~AL~~t~~nve~Ave~L~~~ 67 (73)
T 1wiv_A 33 VDTLLS-FGFAEDVARKALKASGGDIEKATDWVFNN 67 (73)
T ss_dssp HHHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHHS
T ss_pred HHHHHH-cCCCHHHHHHHHHHhCCCHHHHHHHHHhC
Confidence 344443 48899999999999999999999999764
No 97
>1tr8_A Conserved protein (MTH177); chaperones, nascent polypeptide-associated complex, ribosome domain, ubiquitin, chaperone; 2.27A {Methanothermobacter marburgensis}
Probab=90.34 E-value=0.12 Score=45.69 Aligned_cols=58 Identities=19% Similarity=0.223 Sum_probs=43.2
Q ss_pred cceEEccCCCcchhhhhhhhhhchhhhhcccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHH
Q psy13351 187 GINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEIL 251 (837)
Q Consensus 187 ~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~L 251 (837)
.-+|.|.|....... . ...-..-..+..+.++++++..++++||.++|||+-.|+-+|
T Consensus 44 ~~Ty~I~Ge~~~~d~-~------~e~~i~~edi~lv~~q~~vs~~~A~~aL~~~~gDiv~Ai~~L 101 (102)
T 1tr8_A 44 QKTYQVTGKARERSL-E------AEMEIPEDDIELVMNQTGASREDATRALQETGGDLAEAIMRL 101 (102)
T ss_dssp EEEEEEESCEEEEEE-E------EECCCCHHHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHC
T ss_pred CcEEEEEcCceeecc-c------ccCCCCHHHHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHh
Confidence 357888887544311 0 112334456788899999999999999999999999999877
No 98
>1veg_A NEDD8 ultimate buster-1; ubiquitin associated domain, UBA domain, three helix bundle, structural genomics; NMR {Mus musculus} SCOP: a.5.2.1
Probab=89.21 E-value=0.26 Score=41.72 Aligned_cols=29 Identities=17% Similarity=0.062 Sum_probs=26.9
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|++...+++||..++||++.|++||-..
T Consensus 39 MGF~~~~A~~AL~~t~gdve~A~e~L~sh 67 (83)
T 1veg_A 39 MGFDTVVAEAALRVFGGNVQLAAQTLAHH 67 (83)
T ss_dssp HSCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 37899999999999999999999999875
No 99
>2ekk_A UBA domain from E3 ubiquitin-protein ligase HUWE1; ubiquitin associated domain, compact three helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=88.93 E-value=0.24 Score=37.23 Aligned_cols=27 Identities=19% Similarity=0.146 Sum_probs=24.0
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
-|.+...|++||..+| |++.|++||-.
T Consensus 19 MGF~~~~a~~AL~~~~-n~e~A~~~L~~ 45 (47)
T 2ekk_A 19 MGFTREHAMEALLNTS-TMEQATEYLLT 45 (47)
T ss_dssp HHCCHHHHHHHHHHSC-SHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHcC-CHHHHHHHHHc
Confidence 4788999999999995 99999999953
No 100
>2dkl_A Trinucleotide repeat containing 6C protein; TNRC6C, KIAA1582 protein, UBA domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=88.83 E-value=0.28 Score=41.86 Aligned_cols=34 Identities=26% Similarity=0.165 Sum_probs=28.8
Q ss_pred hhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.+|-. -|.+...|++||..++||++.|++||-.+
T Consensus 26 ~qL~~-MGF~~~~a~~AL~~~n~n~e~A~ewL~~h 59 (85)
T 2dkl_A 26 KQLTD-MGFPREPAEEALKSNNMNLDQAMSALLEK 59 (85)
T ss_dssp HHHHH-HTCCHHHHHHHHHHTTSCHHHHHHHHHTT
T ss_pred HHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHHC
Confidence 33433 48899999999999999999999999875
No 101
>2cwb_A Chimera of immunoglobulin G binding protein G and ubiquitin-like protein SB132; helical bundle, protein binding; NMR {Streptococcus SP} PDB: 2den_A
Probab=87.92 E-value=0.38 Score=42.84 Aligned_cols=37 Identities=19% Similarity=0.201 Sum_probs=28.5
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.+.+|+..--.....+.+||..++||++.|++||-..
T Consensus 69 qL~qL~eMGF~d~~~ni~AL~~t~Gdve~AVe~L~~~ 105 (108)
T 2cwb_A 69 QLQQLRDMGIQDDELSLRALQATGGDIQAALELIFAG 105 (108)
T ss_dssp HHHHHHTTTCCCHHHHHHHHHHHTSCHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHhCCCHHHHHHHHHhc
Confidence 3455555333456789999999999999999999764
No 102
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=87.48 E-value=0.53 Score=35.96 Aligned_cols=30 Identities=27% Similarity=0.232 Sum_probs=27.8
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
-|++..+..+||..++||+|-|-.+||+-.
T Consensus 19 lGF~r~~ai~AL~~a~nnve~Aa~iL~ef~ 48 (53)
T 2d9s_A 19 QGYSYQDIQKALVIAHNNIEMAKNILREFS 48 (53)
T ss_dssp HTCCHHHHHHHHHHTTTCHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 488999999999999999999999999864
No 103
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=86.92 E-value=0.61 Score=35.47 Aligned_cols=29 Identities=31% Similarity=0.202 Sum_probs=27.1
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|++..+..+||..++||++-|-.+|+|-
T Consensus 21 mGFsr~~ai~AL~~a~nnve~AaniLlef 49 (52)
T 2ooa_A 21 EGYAFEEVKRALEIAQNNVEVARSILREF 49 (52)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 58899999999999999999999999984
No 104
>1vek_A UBP14, ubiquitin-specific protease 14, putative; UBA domain, three helix bundle, ubiquitin associated domain, structural genomics; NMR {Arabidopsis thaliana} SCOP: a.5.2.1
Probab=86.47 E-value=0.47 Score=40.39 Aligned_cols=34 Identities=24% Similarity=0.269 Sum_probs=28.1
Q ss_pred hhhhcccCCChHHHHHHHHHhh-ccHHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEAN-GKLSKAEEILRIK 254 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~-~d~~~A~~~Lr~~ 254 (837)
.+|-. -|.+...|++||..++ ||++.|++||-..
T Consensus 34 ~~L~~-MGF~~~~a~~AL~~t~n~n~e~A~ewL~~h 68 (84)
T 1vek_A 34 AQLVS-MGFSQLHCQKAAINTSNAGVEEAMNWLLSH 68 (84)
T ss_dssp HHHHH-HTCCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHH-cCCCHHHHHHHHHHHcCCCHHHHHHHHHhC
Confidence 34443 4889999999999995 7999999999875
No 105
>1dv0_A DNA repair protein HHR23A; helical bundle, DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: a.5.2.1 PDB: 1f4i_A
Probab=85.40 E-value=0.38 Score=36.18 Aligned_cols=27 Identities=15% Similarity=-0.013 Sum_probs=25.2
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
-|.+...|.+||..+++|.+.|.+||=
T Consensus 14 mGF~~~~a~~Al~a~~~n~e~A~~~Lf 40 (47)
T 1dv0_A 14 LGFPESLVIQAYFACEKNENLAANFLL 40 (47)
T ss_dssp TTCCHHHHHHHHTTTTSCHHHHHHHTT
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHH
Confidence 489999999999999999999999984
No 106
>4ae4_A Ubiquitin-associated protein 1; protein transport, endosomal sorting, tetherin, VPU, HIV-1, monoubiquitin; HET: NHE; 1.65A {Homo sapiens} PDB: 4ae4_B*
Probab=85.10 E-value=0.54 Score=42.72 Aligned_cols=30 Identities=10% Similarity=-0.060 Sum_probs=27.8
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
-|+|...|++||..+++|.++|++||-...
T Consensus 18 MGFp~~~~~kAl~~~g~~~e~amewL~~h~ 47 (118)
T 4ae4_A 18 MGYSYECVLRAMKAAGANIEQILDYLFAHG 47 (118)
T ss_dssp TTCCHHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHCcCHHHHHHHHHHhc
Confidence 589999999999999999999999998863
No 107
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=83.39 E-value=0.71 Score=42.41 Aligned_cols=34 Identities=21% Similarity=0.103 Sum_probs=29.0
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
+.+|.. -|++...|++||..++||++.|.+||-.
T Consensus 82 v~~L~~-MGF~~~~a~~AL~~~~~~~e~A~e~L~~ 115 (126)
T 2lbc_A 82 VAIITS-MGFQRNQAIQALRATNNNLERALDWIFS 115 (126)
T ss_dssp HHHHHH-HTSCHHHHHHHHHHHTSCHHHHHHHHHT
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 444544 4889999999999999999999999965
No 108
>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A
Probab=82.45 E-value=10 Score=36.91 Aligned_cols=50 Identities=10% Similarity=0.067 Sum_probs=33.8
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC--Cc---ceEEccCCCc
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DG---INYVIPGNDD 197 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~--~~---i~ypIP~N~~ 197 (837)
..-|++|+++...+. .+++.|+..|+|||+|++...+| +. .|+.|+....
T Consensus 112 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad~~l~~~~~ 170 (199)
T 1x92_A 112 QPGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPEDVEIRVPSK 170 (199)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTCEEEECSCS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCCEEEEeCCC
Confidence 467888888765443 36788899999999999876543 12 4555544433
No 109
>2lbc_A Ubiquitin carboxyl-terminal hydrolase 13; tandem UBA of USP13; NMR {Homo sapiens}
Probab=82.17 E-value=0.95 Score=41.57 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=27.2
Q ss_pred cCCChHHHHHHHHHhhc-cHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANG-KLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~-d~~~A~~~Lr~~g 255 (837)
-|.+...|++||..++| |++.|++||-...
T Consensus 13 MGF~~~~a~~AL~~t~n~~~e~A~~wL~~~~ 43 (126)
T 2lbc_A 13 MGFPLEACRKAVYFTGNMGAEVAFNWIIVHM 43 (126)
T ss_dssp TSSCCHHHHHHHHHHTSCCHHHHHHHHHHGG
T ss_pred cCCCHHHHHHHHHHcCCCCHHHHHHHHHHhc
Confidence 68999999999999966 9999999998864
No 110
>2oo9_A E3 ubiquitin-protein ligase CBL; alpha-helical domain, homodimer; 2.10A {Homo sapiens}
Probab=81.99 E-value=1.4 Score=32.46 Aligned_cols=30 Identities=27% Similarity=0.236 Sum_probs=27.6
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
-|+...+..+||.-+++|++.|-+.||+-.
T Consensus 14 ~Gf~~~~~~rAL~ia~Nnie~A~nIL~ef~ 43 (46)
T 2oo9_A 14 QGYSYQDIQKALVIAQNNIEMAKNILREFA 43 (46)
T ss_dssp TTBCHHHHHHHHHHTTTCHHHHHHHHHHHC
T ss_pred cCCCHHHHHHHHHHhhccHHHHHHHHHHhc
Confidence 478899999999999999999999999863
No 111
>3e21_A HFAF1, FAS-associated factor 1; UBA, alternative splicing, apoptosis, nucleus, phosphoprotein; 1.73A {Homo sapiens}
Probab=81.54 E-value=0.71 Score=34.34 Aligned_cols=33 Identities=21% Similarity=0.100 Sum_probs=28.1
Q ss_pred cchhhhhcccCCC-hHHHHHHHHHhhccHHHHHH
Q psy13351 217 KTVGELRSKTLAP-IMECKKALIEANGKLSKAEE 249 (837)
Q Consensus 217 ~~v~~lr~~t~~~-~~~~k~al~~~~~d~~~A~~ 249 (837)
..+.++..-||.. +.+|+.-|+.+|||++.|+.
T Consensus 7 e~ia~F~~iTG~~d~~~A~~~Lea~nWDLe~Av~ 40 (45)
T 3e21_A 7 MILADFQACTGIENIDEAITLLEQNNWDLVAAIN 40 (45)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHTTTCHHHHHT
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHcCCcHHHHHH
Confidence 4567778889955 69999999999999999974
No 112
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=81.53 E-value=5.4 Score=38.48 Aligned_cols=50 Identities=14% Similarity=0.096 Sum_probs=33.8
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC----CcceEEccCCCc
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP----DGINYVIPGNDD 197 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~----~~i~ypIP~N~~ 197 (837)
..-|++|+++...+. .++++|+..|.|+|+|+|...+| ..+.+.+|+...
T Consensus 78 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~ 135 (186)
T 1m3s_A 78 AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIGKQADLIIRMPGSPK 135 (186)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHCSEEEECSCCSC
T ss_pred CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchHHhCCEEEEeCCccc
Confidence 356888888765443 36788999999999999875443 124445565443
No 113
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=80.91 E-value=6.4 Score=37.92 Aligned_cols=65 Identities=15% Similarity=0.127 Sum_probs=39.3
Q ss_pred CCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC--Cc--ceEEccCCC----cchhhhhhhhhhchhhh
Q psy13351 149 IPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DG--INYVIPGND----DSAKSIALYTKGIVDAF 213 (837)
Q Consensus 149 ~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~--~~--i~ypIP~N~----~s~~si~~~~~~l~~ai 213 (837)
.-|++|+++...+. .+++.|...|+|+|+|.|...+| +. +.+++|.+. +|.-+.-+++.+|...+
T Consensus 87 ~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~~~~~~~S~~~~~~l~d~L~~~~ 163 (187)
T 3sho_A 87 PTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPARIADHVLVAATRGVGHSLSPVGLIAVVNLLLAEI 163 (187)
T ss_dssp TTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHHHHCSEEEECCCCCSSSSCCCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcchhhCcEEEEecCCCCcccccHhHHHHHHHHHHHHH
Confidence 55788888655333 45678889999999999876544 12 444455543 23334444444444444
No 114
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=80.38 E-value=7 Score=38.74 Aligned_cols=47 Identities=13% Similarity=0.084 Sum_probs=32.2
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceEEccC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPG 194 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~ 194 (837)
..-|++|+++...+ ..++++|+..|.|||+|++...+| +..|+.|+.
T Consensus 130 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~s~La~~aD~~l~~ 182 (212)
T 2i2w_A 130 REGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDGGKMAGTADIEIRV 182 (212)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTCGGGTTCSSEEEEE
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCCCchHHhCCEEEEc
Confidence 46788888876543 346788899999999999876433 234554443
No 115
>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3
Probab=79.76 E-value=4.5 Score=39.83 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=32.4
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCCC--cceE--EccCCC
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSPD--GINY--VIPGND 196 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~y--pIP~N~ 196 (837)
..-|++|+++..-+. .+++.|+..|+|||+|.+...+|- ..|+ .+|...
T Consensus 88 ~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~ad~~l~~~~~~ 144 (200)
T 1vim_A 88 TDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLAKMADVVMVVKGKM 144 (200)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCSSC
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHHHhCCEEEEECCcc
Confidence 356888888755433 366888899999999998765442 2444 445544
No 116
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=79.21 E-value=26 Score=31.02 Aligned_cols=132 Identities=22% Similarity=0.382 Sum_probs=84.1
Q ss_pred CCCEEEEEccCcchHHHHHcC------CccceEEEEe--eehh--hhhhhhhHHHhHHHHHHHHHHHHHhhhcCCCCccc
Q psy13351 619 KLPIRVFSIIKSGALKRVIEG------KNEGTLVYEI--YIMI--ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGM 688 (837)
Q Consensus 619 gi~v~I~ng~~~~~i~~al~G------e~~GT~I~~~--~~~v--~~~i~~~~~~~m~~~i~~~~~~l~~irtgr~~p~~ 688 (837)
|+-++.+.|.+.+.+.++|.. +-.||.-..- +... +-.+-.++..++.+--++++.+|
T Consensus 2 gvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~ef------------ 69 (170)
T 4hhu_A 2 GVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEF------------ 69 (170)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHH------------
T ss_pred ceEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhc------------
Confidence 344556667666666666542 2346654432 1111 12223456667777778888887
Q ss_pred cceeEEEecccccccceeeeeeccCCceEEEecCCcccHHHHHHHHHhc-----CC--CccceecCCeeEEeCCCCCHHH
Q psy13351 689 LDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFEKEMSSIIKKAINEA-----NL--GLNPTIQGNIIYVSIPPLTKER 761 (837)
Q Consensus 689 ld~i~V~~~g~~~~L~~lA~v~~~~~~~l~i~~~d~~~~~~I~kaI~~s-----~l--~~~p~~~~~~i~v~iP~~T~E~ 761 (837)
+|.|.|. | .-++.-+++..|.-..+.+.+||+.+. .+ -++...+|+.+.|.|.-+.+..
T Consensus 70 --ni~v~y~-----------i-mgsgsgvm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqv 135 (170)
T 4hhu_A 70 --NINVQYQ-----------I-MGSGSGVMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQV 135 (170)
T ss_dssp --TCEEEEE-----------E-ECTTCCEEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEECSSEEEEEEESCCHHH
T ss_pred --ceEEEEE-----------E-EeCCceEEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHH
Confidence 3555431 1 223455777788877788888887542 22 3455679999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy13351 762 REEIVKLIKNITEET 776 (837)
Q Consensus 762 R~~l~k~~k~~~e~~ 776 (837)
|++|+|.+..+..+.
T Consensus 136 rkelakeaerl~~ef 150 (170)
T 4hhu_A 136 RKELAKEAERLKAEF 150 (170)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999988776654
No 117
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=78.77 E-value=22 Score=34.26 Aligned_cols=50 Identities=14% Similarity=0.089 Sum_probs=34.1
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCCC--c--ceEEccCCCc
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSPD--G--INYVIPGNDD 197 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~~--~--i~ypIP~N~~ 197 (837)
..-|++|+++...+ ..+++.|+..|.|+|+|++...+|- . +.+.+|+++.
T Consensus 115 ~~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad~~l~~~~~~~ 172 (198)
T 2xbl_A 115 NEGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCDLLLEVPSADT 172 (198)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCSEEEECSCSSH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCCEEEEeCCCcH
Confidence 35688888876544 3466788899999999998765442 2 4455566554
No 118
>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3
Probab=78.73 E-value=16 Score=34.98 Aligned_cols=50 Identities=20% Similarity=0.222 Sum_probs=33.0
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCCC--cceE--EccCCCc
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSPD--GINY--VIPGNDD 197 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~~--~i~y--pIP~N~~ 197 (837)
..-|++|+++...+. .+++.|+..|+|+|+|++...+|- ..|+ .+|+.+.
T Consensus 109 ~~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad~~l~~~~~~~ 166 (188)
T 1tk9_A 109 NEKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCDHNLVVPSDDT 166 (188)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCSEEEEESCSCH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCCEEEEeCCCCH
Confidence 356888888765433 356788889999999998654441 2344 4555443
No 119
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=76.92 E-value=7.5 Score=33.81 Aligned_cols=57 Identities=18% Similarity=0.207 Sum_probs=39.6
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHH-------HHHH------HHHHHHHHHhhhhcCCCCchhhHh-HHHHHHHHHH
Q psy13351 754 IPPLTKERREEIVKLIKNITEETKIS-------IRKI------RRDSNENLKKLLKNKILSVDNEYR-AQYDIQKLTD 817 (837)
Q Consensus 754 iP~~T~E~R~~l~k~~k~~~e~~k~~-------iR~i------R~~~~~~~kk~~k~~~~s~D~~~~-~~~~iq~l~~ 817 (837)
+|..+.|.|+..++.+....++|..- +|++ |..++.+++..++ ++.+ ++.++++++|
T Consensus 24 ~~~~~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~~p~~~R~~~~~klr~Yk~-------dl~~~lk~~lk~l~d 94 (97)
T 3onj_A 24 APSQPLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSIGDASERATYKAKLREWKK-------TIQSDIKRPLQSLVD 94 (97)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-------HHHHHTHHHHHHHHH
T ss_pred HhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHhhh
Confidence 35788899999999999999999874 4555 6666666665532 3444 5566666655
No 120
>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}
Probab=76.84 E-value=20 Score=35.24 Aligned_cols=117 Identities=18% Similarity=0.202 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCcccCc-ccCCC-CC-ChHHHHHHHHHHHHHHHHhccC
Q psy13351 40 YMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPFIDQR-WLGGL-LT-NFKTIKTSIQRLKEMDLFITNG 116 (837)
Q Consensus 40 ~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~v~~r-w~~G~-LT-N~~~i~~~i~~~~~~~~~~~~~ 116 (837)
..+.+|+..|.....++++|.|+|....+.-. ..++.+....|...| -++.. ++ +...+ ..+.. ..
T Consensus 30 ~~i~~a~~~i~~al~~~~~I~i~G~G~S~~~A-~~~~~~l~~~~~~~r~g~~~~~~~~d~~~~-~a~~~---------d~ 98 (201)
T 3trj_A 30 PAIAQAAKAMVSCLENGGKVLVCGNGSSGVIA-QHFTSKLLNHFEMERPPLPAIALTGDVATI-TAVGN---------HY 98 (201)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESTHHHHHH-HHHHHHHHC-------CCCEEETTSCHHHH-HHHHH---------HT
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEeCcHhHHHH-HHHHHHhcCccCCCCCCCceEEccCChHHH-HHhcc---------CC
Confidence 35778888888877889999999998854422 334444322222111 11111 11 22211 01100 00
Q ss_pred ccccCChHHHHHHhHHHHHHHHhhccccCCCCCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCC
Q psy13351 117 SIRKLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHS 184 (837)
Q Consensus 117 ~~~~~~kk~~~~~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~ 184 (837)
.+... +.++ +... -..-|++|+++...+. .+++.|+..|+|+|+|++...+
T Consensus 99 ~~~~~-------~~~~---l~~~-------~~~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s 153 (201)
T 3trj_A 99 GFSQI-------FAKQ---VAAL-------GNEDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGG 153 (201)
T ss_dssp CGGGT-------THHH---HHHH-------CCTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCC
T ss_pred CHHHH-------HHHH---HHhh-------CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCC
Confidence 01000 0010 1111 1467888888654332 4668899999999999986543
No 121
>2cos_A Serine/threonine protein kinase LATS2; UBA domain, structure genomics, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.5.2.1
Probab=76.21 E-value=2.1 Score=32.72 Aligned_cols=30 Identities=13% Similarity=0.023 Sum_probs=26.6
Q ss_pred cCCChHHHHHHHHHhhc-cHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANG-KLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~-d~~~A~~~Lr~~g 255 (837)
-|++-..+..||..+|+ .++.|.+||.+-+
T Consensus 19 MGFd~erae~Alk~Tg~~Gle~AmewL~k~~ 49 (54)
T 2cos_A 19 AGCDQEMAGRALKQTGSRSIEAALEYISKMS 49 (54)
T ss_dssp HHCCHHHHHHHHHHHTSCCHHHHHHHHHHHS
T ss_pred cCCCHHHHHHHHHHhCcccHHHHHHHHHHhc
Confidence 47788899999999998 8999999999864
No 122
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=75.22 E-value=10 Score=36.16 Aligned_cols=34 Identities=21% Similarity=0.197 Sum_probs=25.6
Q ss_pred CCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCC
Q psy13351 149 IPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTN 182 (837)
Q Consensus 149 ~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn 182 (837)
.-|++|+++...+. .++++|+..|.|+|+|++..
T Consensus 82 ~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~ 119 (180)
T 1jeo_A 82 KDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCEC 119 (180)
T ss_dssp TTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSC
T ss_pred CCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 56788888655332 35688899999999999864
No 123
>2juj_A E3 ubiquitin-protein ligase CBL; alpha helix, UBA domain, calcium, cytoplasm, metal- binding, phosphorylation, proto-oncogene, SH2 domain; NMR {Homo sapiens}
Probab=75.03 E-value=2.2 Score=32.69 Aligned_cols=30 Identities=27% Similarity=0.269 Sum_probs=27.6
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHHh
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIKL 255 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g 255 (837)
-|+...+..+||..+++|++-|-++|+|-.
T Consensus 17 mGfsr~da~~AL~ia~Ndv~~AtNiLlEf~ 46 (56)
T 2juj_A 17 QGYSYQDIQKALVIAQNNIEMAKNILREFV 46 (56)
T ss_dssp TTCCHHHHHHHHHHTTTCSHHHHHHHHHSC
T ss_pred cCCCHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 478999999999999999999999999953
No 124
>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}
Probab=74.79 E-value=5 Score=39.36 Aligned_cols=48 Identities=17% Similarity=0.248 Sum_probs=32.5
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC----CcceEEccCC
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP----DGINYVIPGN 195 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~----~~i~ypIP~N 195 (837)
..-|++|+++...+. .+++.|...|.|+|+|++...+| ..+.+.+|+.
T Consensus 91 ~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~~~ad~~l~~~~~ 146 (201)
T 3fxa_A 91 QKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVS 146 (201)
T ss_dssp CTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHHHHCSEEEECCCS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhHHhCCEEEEcCCC
Confidence 355888888765433 45688999999999999876554 2244444553
No 125
>1vdl_A Ubiquitin carboxyl-terminal hydrolase 25; UBA domain, mouse cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: a.5.2.1
Probab=73.88 E-value=2.3 Score=34.63 Aligned_cols=37 Identities=30% Similarity=0.287 Sum_probs=31.3
Q ss_pred chhhhhcccC-CChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 218 TVGELRSKTL-APIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 218 ~v~~lr~~t~-~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
...+||+-|| ....---+||+.++||+..|+.+|-++
T Consensus 27 lLnQLrEITGiqD~~~L~~ALkas~Gdl~~AV~~LT~~ 64 (80)
T 1vdl_A 27 FLNQLREITGINDAQILQQALKDSNGNLELAVAFLTAK 64 (80)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHHHHTSCHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCcHHHHHHHHHhccCCHHHHHHHHhcc
Confidence 3578899998 456667799999999999999999886
No 126
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=73.53 E-value=30 Score=33.45 Aligned_cols=77 Identities=14% Similarity=0.148 Sum_probs=48.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy13351 756 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~keke 833 (837)
.||+|.|+++-+.-+++..+.+ .+|.-.+....++..+.......++.++.+.+++.++..+-..+--+...+-.||
T Consensus 67 nLT~EQq~ql~~I~~e~r~~~~-~Lr~ql~akr~EL~aL~~a~~~DeakI~aL~~Ei~~Lr~qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 67 PLTTEQQATAQKIYDDYYTQTS-ALRQQLISKRYEYNALLTASSPDTAKINAVAKEMESLGQKLDEQRVKRDVAMAQA 143 (175)
T ss_dssp -CCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5899999988766665544433 2232223333444445444446778888899999988888777766665555544
No 127
>1oai_A Nuclear RNA export factor; nuclear transport, nuclear transport factor; 1.0A {Homo sapiens} SCOP: a.5.2.3
Probab=73.21 E-value=2.7 Score=33.13 Aligned_cols=37 Identities=8% Similarity=0.129 Sum_probs=33.1
Q ss_pred cchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 217 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 217 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.++..+...||-...=|.+.|++++||++.|+.-..+
T Consensus 9 ~mv~~~s~~Tgmn~~~s~~cL~~~~Wd~~~A~~~F~~ 45 (59)
T 1oai_A 9 EMLQAFSTQSGMNLEWSQKCLQDNNWDYTRSAQAFTH 45 (59)
T ss_dssp HHHHHHHHHHCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 4577888999999999999999999999999998766
No 128
>2lva_A Ubiquitin carboxyl-terminal hydrolase 28; UIM, ubiquitin interacting motif, UBA domain, NESG, northeas structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=75.28 E-value=0.72 Score=41.40 Aligned_cols=40 Identities=25% Similarity=0.197 Sum_probs=34.3
Q ss_pred chhhhhcccCCC-hHHHHHHHHHhhccHHHHHHHHHHHhhh
Q psy13351 218 TVGELRSKTLAP-IMECKKALIEANGKLSKAEEILRIKLGK 257 (837)
Q Consensus 218 ~v~~lr~~t~~~-~~~~k~al~~~~~d~~~A~~~Lr~~g~~ 257 (837)
.+.+||+-||.+ ..--.+||+.+|||+.+|+.+|-++-..
T Consensus 21 lLNQLrEITGIqD~~~L~~ALkAsnGdl~qAV~~LT~~~~~ 61 (129)
T 2lva_A 21 LLNQLREITGIQDPSFLHEALKASNGDITQAVSLLTDERVK 61 (129)
Confidence 357899999966 7788899999999999999999987543
No 129
>2jp7_A MRNA export factor MEX67; solution MEX67, UBA, translation; NMR {Saccharomyces cerevisiae} PDB: 2khh_A
Probab=70.56 E-value=2.6 Score=32.96 Aligned_cols=38 Identities=11% Similarity=-0.088 Sum_probs=34.0
Q ss_pred cchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 217 KTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 217 ~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.++.++...||-...=+.+.|++++||++.|+.-..+.
T Consensus 8 ~mv~~~s~~T~Mn~e~S~~cL~~n~Wd~~~A~~~F~~~ 45 (57)
T 2jp7_A 8 ELLNKLHLETKLNAEYTFMLAEQSNWNYEVAIKGFQSS 45 (57)
T ss_dssp HHHHHHHHHHCSCHHHHHHHHHHTTTCSHHHHHHHHHS
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 35778889999999999999999999999999988773
No 130
>1v92_A NSFL1 cofactor P47; 3-helix bundle, recombination; NMR {Rattus norvegicus} SCOP: a.5.2.3
Probab=70.32 E-value=2.8 Score=30.96 Aligned_cols=36 Identities=19% Similarity=-0.045 Sum_probs=30.7
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+.++..-|+++...|+.-|+.++||++.|+...-+
T Consensus 8 ~i~~F~~iTg~~~~~A~~~L~~~~wdle~Ai~~ff~ 43 (46)
T 1v92_A 8 ALREFVAVTGAEEDRARFFLESAGWDLQIALASFYE 43 (46)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHTTSCSHHHHHHHHH
T ss_pred HHHHHHHHhCcCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 466677789999999999999999999999976543
No 131
>2dam_A ETEA protein; KIAA0887, UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=67.87 E-value=3.1 Score=33.69 Aligned_cols=36 Identities=14% Similarity=0.121 Sum_probs=30.9
Q ss_pred chhhhhcccC-CChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTL-APIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~-~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+.++..-|+ .....|+..|+.+|||++.|+.-.-+
T Consensus 21 ~i~qF~~ITg~~d~~~A~~~Le~~~WnLe~Av~~ff~ 57 (67)
T 2dam_A 21 KLLQFQDLTGIESMDQCRHTLEQHNWNIEAAVQDRLN 57 (67)
T ss_dssp HHHHHHHHHCCSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 4667778899 89999999999999999999986544
No 132
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=67.57 E-value=24 Score=35.05 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=28.1
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhh--cCCCEEEEecCCCCC
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIK--LNIPIIGVVDTNHSP 185 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~--l~IP~i~l~Dtn~~~ 185 (837)
..-|++|+++...+. .+++.|.. .|.|+|+|++...+|
T Consensus 105 ~~~DlvI~iS~SG~t~~~i~~~~~ak~~~~Ga~vI~IT~~~~s~ 148 (220)
T 3etn_A 105 QENDLLLLISNSGKTREIVELTQLAHNLNPGLKFIVITGNPDSP 148 (220)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHHCTTCEEEEEESCTTSH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHhcCCCCeEEEEECCCCCh
Confidence 355788888765433 45688899 999999999876544
No 133
>3s2u_A UDP-N-acetylglucosamine--N-acetylmuramyl-(pentape pyrophosphoryl-undecaprenol N-acetylglucosamine...; N-acetylglucosaminyl transferase; HET: UD1; 2.23A {Pseudomonas aeruginosa}
Probab=67.50 E-value=25 Score=37.80 Aligned_cols=36 Identities=11% Similarity=0.076 Sum_probs=27.5
Q ss_pred CCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCC
Q psy13351 149 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSP 185 (837)
Q Consensus 149 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~ 185 (837)
.||+||.+...-.-.+..-|..++||+| +.+.|+-|
T Consensus 92 ~PDvVi~~g~~~s~p~~laA~~~~iP~v-ihe~n~~~ 127 (365)
T 3s2u_A 92 RPVCVLGLGGYVTGPGGLAARLNGVPLV-IHEQNAVA 127 (365)
T ss_dssp CCSEEEECSSSTHHHHHHHHHHTTCCEE-EEECSSSC
T ss_pred CCCEEEEcCCcchHHHHHHHHHcCCCEE-EEecchhh
Confidence 8999988876666667778999999998 45555443
No 134
>3tuf_A Stage III sporulation protein AH; intercellular signalling, intercellular channel, sporulation engulfment and signalling, intercellular space; 2.26A {Bacillus subtilis} PDB: 3uz0_A
Probab=67.43 E-value=18 Score=35.42 Aligned_cols=61 Identities=10% Similarity=0.204 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHH--HHHHHHHHHH
Q psy13351 770 KNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFI--LEINQLLINK 830 (837)
Q Consensus 770 k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~--~~id~~~~~k 830 (837)
..++.++|...-..|.+.++.|+....+..+|+++...+.+++.+|++... ..|+.++++|
T Consensus 82 ~~yFae~RL~REq~Rsk~~E~L~eII~n~n~S~eeK~eA~~ql~eLt~~~ekE~~IE~LLKAK 144 (197)
T 3tuf_A 82 DDLFTTYRLDLEDARSKEREELNAIVSSDDATAKEKSEAYDKMTALSEVEGTEKQLETLIKTQ 144 (197)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 358999999999999999999999999999999999999999999998664 4577777765
No 135
>2cp8_A NEXT to BRCA1 gene 1 protein; UBA domain, structural genomics, human, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=67.05 E-value=3.3 Score=31.97 Aligned_cols=35 Identities=11% Similarity=-0.084 Sum_probs=27.3
Q ss_pred hhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 220 GELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 220 ~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.+|++.-=+.....+++|..+|||+++||+.|-..
T Consensus 14 ~~L~eMGF~D~~~N~~aL~~~~gnv~~aI~~Ll~~ 48 (54)
T 2cp8_A 14 AHLFEMGFCDRQLNLRLLKKHNYNILQVVTELLQL 48 (54)
T ss_dssp HHHHHHTCCCHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred HHHHHcCCCcHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 34555333477889999999999999999988654
No 136
>2dal_A Protein KIAA0794; FAS associted factor 1, UBA-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=65.52 E-value=3.7 Score=32.65 Aligned_cols=37 Identities=19% Similarity=0.066 Sum_probs=31.6
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.+.++..-|++....|+..|+.++||++.|+...-+.
T Consensus 18 ~i~qF~~iTg~~~~~A~~~Le~~~WnLe~Av~~ff~~ 54 (62)
T 2dal_A 18 LIQQFTTITGASESVGKHMLEACNNNLEMAVTMFLDG 54 (62)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHTTTSCHHHHHHHHHHS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCCHHHHHHHHHcC
Confidence 3666777899999999999999999999999866544
No 137
>3jx9_A Putative phosphoheptose isomerase; YP_001815198.1, structura genomics, joint center for structural genomics, JCSG; HET: MSE; 1.95A {Exiguobacterium sibiricum 255-15}
Probab=62.11 E-value=24 Score=33.98 Aligned_cols=28 Identities=11% Similarity=0.030 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhccCCCeEEEEecchh
Q psy13351 40 YMYEKAIRYIYQLGFSKGTLLFVGTKRQ 67 (837)
Q Consensus 40 ~~L~~a~~~i~~~~~~~~~iLfv~t~~~ 67 (837)
..+.+|++++..-..++|.|-+.|+...
T Consensus 22 ~~I~~AA~llaqai~~~g~IyvfG~Ghs 49 (170)
T 3jx9_A 22 DELFDVVRLLAQALVGQGKVYLDAYGEF 49 (170)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEECGGG
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECCCcH
Confidence 3899999999998899999999998874
No 138
>1otr_A Protein CUE2; protein-protein complex, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: a.5.2.4
Probab=61.55 E-value=5.4 Score=30.17 Aligned_cols=28 Identities=18% Similarity=0.140 Sum_probs=24.7
Q ss_pred CCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 227 LAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 227 ~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
.......|..|..+|||+|.|++.|-..
T Consensus 17 ~~~~~~ik~~L~~~~Gd~d~Ai~~LL~~ 44 (49)
T 1otr_A 17 AISKSKLQVHLLENNNDLDLTIGLLLKE 44 (49)
T ss_dssp SSCHHHHHHHHHHTTTCSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHHHhc
Confidence 4677889999999999999999998764
No 139
>2dzl_A Protein FAM100B; UBA-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.42 E-value=5.5 Score=32.10 Aligned_cols=36 Identities=11% Similarity=0.026 Sum_probs=31.3
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
++.++-.-|++....++..|+.++||++.|+...-+
T Consensus 20 ~i~qF~~iTg~~~~~A~~~Le~~~WdLe~Al~~ff~ 55 (66)
T 2dzl_A 20 MINQFVLAAGCAADQAKQLLQAAHWQFETALSTFFQ 55 (66)
T ss_dssp HHHHHHHHHCCCHHHHHHHHHTTTTCHHHHHHHHHT
T ss_pred HHHHHHHHcCCCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 467777889999999999999999999999987644
No 140
>4dbg_B Ring finger protein 31; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens}
Probab=53.10 E-value=11 Score=35.67 Aligned_cols=39 Identities=28% Similarity=0.275 Sum_probs=33.2
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhh
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLG 256 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~ 256 (837)
.+++|.........+|-+||.+++||++.|+..|...-+
T Consensus 105 K~~eL~s~G~~~~~~~~~aL~~~~Gdv~~Al~eLqr~lL 143 (162)
T 4dbg_B 105 KVQELQSLGFGPEEGSLQALFQHGGDVSRALTELQRQRL 143 (162)
T ss_dssp HHHHHHHTTCCGGGTHHHHHHHTTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCCchHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 466777777889999999999999999999999987644
No 141
>3fxb_A Trap dicarboxylate transporter, DCTP subunit; periplasmic substrate binding protein, selectivity helix, TR membrane; HET: 4CS; 2.90A {Silicibacter pomeroyi dss-3}
Probab=52.89 E-value=43 Score=35.48 Aligned_cols=69 Identities=10% Similarity=0.080 Sum_probs=52.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcCCCCchhhHhHHHHHHHHHHHHHHHHH
Q psy13351 756 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLL---KNKILSVDNEYRAQYDIQKLTDKFILEIN 824 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~---k~~~~s~D~~~~~~~~iq~l~~~~~~~id 824 (837)
.|++|.|+.+...+++..+..+...+..-.++++++++.. +--.+++++.....+..+.+.++|.++..
T Consensus 236 ~L~~e~q~~i~~aa~~~~~~~~~~~~~~~~~~~~~l~~~~~G~~v~~~~~~~~~~~~~a~~~v~~~~~~~~g 307 (326)
T 3fxb_A 236 GLSAEDQQLVQNAALAAYDHTVVYQQQAADTELAKIMEAKPEMQVTVLTDEQRSCFKEAAAEVEAKFIEMTG 307 (326)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHCTTCEEEECCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEEECCHHHHHHHHHHHHHHHHHHHHHcC
Confidence 5789999999999988888887777776666666665321 11136888999999999999999988764
No 142
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=52.72 E-value=4 Score=44.49 Aligned_cols=95 Identities=14% Similarity=0.055 Sum_probs=53.0
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHHhhhhhhhhcccccCCCeeEEEEe-CCEEEEEEEecCCchhccch
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNRNAKDGVIAIYIS-EKVGSLVEINCETDFVAKNN 297 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~g~~~a~kk~~r~~~eG~i~~y~~-~~~g~iveln~etdfva~n~ 297 (837)
|.+|-. -|++..+|++||..++||.+.|++||-. |+-....-........-...+.. +.. -...-||...++
T Consensus 172 i~~l~~-MGf~~~~~~~AL~a~~nn~~~A~e~L~~-gip~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~Lr~~p 244 (368)
T 1oqy_A 172 LTEIMS-MGYERERVVAALRASYNNPHRAVEYLLT-GIPGSPEPEHGSVQESQVSEQPATEAA-----GENPLEFLRDQP 244 (368)
T ss_dssp HHHHHT-TTCCSHHHHHHHHHSCSSTTHHHHTTTT-SSTTCSSCCCCCCCCCCSSCCCCSSCC-----SCCTTHHHHHSH
T ss_pred HHHHHH-cCCCHHHHHHHHHHcCCCHHHHHHHHHh-CCCcccccccCCccccccccccCcccc-----ccchHHHHhcCh
Confidence 444443 5899999999999999999999999953 43211000000000000000000 000 002347887888
Q ss_pred HHHHHHHHHHHHHHhcCCCChhhhhccc
Q psy13351 298 EFIKFSKKIAKLITENTPINLDQLNNLK 325 (837)
Q Consensus 298 ~f~~la~~ia~~iaa~~p~~~~~l~q~~ 325 (837)
.|++|= ++...+|.-+..+.|..
T Consensus 245 qf~~lR-----~~vq~nP~~l~~~lq~l 267 (368)
T 1oqy_A 245 QFQNMR-----QVIQQNPALLPALLQQL 267 (368)
T ss_dssp HHHHHH-----HSTTTCTTHHHHHHTTT
T ss_pred HHHHHH-----HHHHhChHHHHHHHHHH
Confidence 887772 34567888777766543
No 143
>2fqm_A Phosphoprotein, P protein; negative strand RNA virus, polymerase, replication, cofactor, viral protein; 2.30A {Vesicular stomatitis indiana virus} SCOP: d.378.1.1
Probab=47.97 E-value=24 Score=28.25 Aligned_cols=32 Identities=22% Similarity=0.505 Sum_probs=29.0
Q ss_pred cCCeeEEeCCC-CCHHHHHHHHHHHHHHHHHHH
Q psy13351 746 QGNIIYVSIPP-LTKERREEIVKLIKNITEETK 777 (837)
Q Consensus 746 ~~~~i~v~iP~-~T~E~R~~l~k~~k~~~e~~k 777 (837)
.|.++++.+|- +|+|.+.+-.+-++..+|-+|
T Consensus 16 ~~KsL~Lf~P~gLt~~Q~~QW~~TIeav~qSak 48 (75)
T 2fqm_A 16 HGKTLRLTLPEGLSGEQKSQWMLTIKAVVQSAK 48 (75)
T ss_dssp TEEEEEEECCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCceEEEeCCCCccHHHHHHHHHHHHHHHhhhc
Confidence 34699999998 999999999999999999887
No 144
>2a3n_A Putative glucosamine-fructose-6-phosphate aminotr; structural genomics, joint center for structural genomics; HET: MSE; 1.23A {Salmonella typhimurium}
Probab=44.98 E-value=77 Score=33.85 Aligned_cols=51 Identities=6% Similarity=0.063 Sum_probs=34.9
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC----CcceEEccCCCcc
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP----DGINYVIPGNDDS 198 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~----~~i~ypIP~N~~s 198 (837)
...|++|+++..-+ ..+++.|+..|.|+|+|++...+| ....+++|+...+
T Consensus 101 ~~~dlvI~iS~SG~t~e~~~a~~~ak~~Ga~vi~IT~~~~S~La~~ad~~l~~~~~~~~ 159 (355)
T 2a3n_A 101 NKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHIPMRHKNGV 159 (355)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHTCSEEEECCCSSCH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCChhhHhCCEEEEeCCCcch
Confidence 46788888876544 346788899999999998865433 1244555655544
No 145
>4dci_A Uncharacterized protein; PSI-biology, midwest center for structural genomics, MCSG, S genomics, unknown function; 2.82A {Synechococcus SP}
Probab=43.19 E-value=2e+02 Score=26.81 Aligned_cols=75 Identities=13% Similarity=0.187 Sum_probs=52.6
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13351 756 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 832 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~kek 832 (837)
.+|+..++++.+.........-..+..++-...+.++...+...-+.+ -.....++.+...|-.+..+..+.|.+
T Consensus 21 iVTe~~Ke~l~~~l~~~i~q~d~elqQLefq~kr~~~e~~~q~~~~~~--p~~~~qi~~iq~q~~~ek~~r~e~k~~ 95 (150)
T 4dci_A 21 VVTPTWKEEAEREISNGIANADQQLAQLEQEGQTVVDQVRRQSANPLD--PRVQEQVANIQQQVAGKRSELEEQKRN 95 (150)
T ss_dssp ECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCC--hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 489999999999999999999999999988888877777653311222 344455555666666666665555543
No 146
>1l6x_B Minimized B-domain of protein A Z34C; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: k.13.1.1 PDB: 1oqo_C* 1oqx_C* 1zdc_A 1zdd_A
Probab=42.16 E-value=15 Score=25.24 Aligned_cols=20 Identities=30% Similarity=0.532 Sum_probs=17.7
Q ss_pred EeCCCCCHHHHHHHHHHHHH
Q psy13351 752 VSIPPLTKERREEIVKLIKN 771 (837)
Q Consensus 752 v~iP~~T~E~R~~l~k~~k~ 771 (837)
+.+|-+|+|.|...++.+|.
T Consensus 13 Lh~~nLtEeQrn~yI~slkd 32 (34)
T 1l6x_B 13 LHDPNLNEEQRNAKIKSIRD 32 (34)
T ss_dssp HHCTTCCHHHHHHHHHHHHH
T ss_pred HcCCCCCHHHHHhHHHHHhc
Confidence 46899999999999999886
No 147
>2zj3_A Glucosamine--fructose-6-phosphate aminotransferase [isomerizing] 1; glucosamine-6-phosphate synthase, aldose/ketose isomerase, rossmann-like fold; HET: G6P; 1.90A {Homo sapiens} PDB: 2zj4_A* 2v4m_A*
Probab=42.03 E-value=19 Score=39.09 Aligned_cols=37 Identities=14% Similarity=0.112 Sum_probs=27.0
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHS 184 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~ 184 (837)
..-|++|+++..-+ ..+++.|+..|.|+|+|++...+
T Consensus 106 ~~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S 146 (375)
T 2zj3_A 106 FRDDVCFFLSQSGETADTLMGLRYCKERGALTVGITNTVGS 146 (375)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCcEEEEECCCCC
Confidence 34577777765433 34778899999999999986543
No 148
>3eua_A Putative fructose-aminoacid-6-phosphate deglycase; putative phosphosugar isomerase, structural genomics, joint for structural genomics, JCSG; HET: MSE FLC; 1.90A {Bacillus subtilis}
Probab=41.16 E-value=65 Score=34.06 Aligned_cols=99 Identities=14% Similarity=0.008 Sum_probs=57.9
Q ss_pred CCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceEEccCC---Ccchhhhhh-hhhhchhhhhcccc
Q psy13351 149 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGN---DDSAKSIAL-YTKGIVDAFLDAKT 218 (837)
Q Consensus 149 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N---~~s~~si~~-~~~~l~~ai~~g~~ 218 (837)
..|++|+++..-+ -.+++.|+..|.|+|+|++...+| +..|+.|+.+ +.+..+..+ .+.+|+-.+...+
T Consensus 74 ~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~e~~va~t~~~~l~~la~~l~~~~- 152 (329)
T 3eua_A 74 EKSLVILCSHSGNTPETVKAAAFARGKGALTIAMTFKPESPLAQEAQYVAQYDWGDEALAINTNYGVLYQIVFGTLQVL- 152 (329)
T ss_dssp TTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHHHHSSEEEECCCSTTCCGGGSHHHHHHHHHHHHHHHH-
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChHHHhCCEEEEeCCCCccchhhHHHHHHHHHHHHHHHHh-
Confidence 5678888865543 357788999999999999765443 2345555433 333333322 2222222221111
Q ss_pred hhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 219 VGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 219 v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
. ......+..++|......+++++++..+.
T Consensus 153 -----~-~~~~~~~~~~~l~~lp~~~~~~l~~~~~~ 182 (329)
T 3eua_A 153 -----E-NNTKFEQAIEGLDQLQAVYEKALKQEADN 182 (329)
T ss_dssp -----H-CCSCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1 22345666778888888888888876554
No 149
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=40.90 E-value=23 Score=27.91 Aligned_cols=36 Identities=22% Similarity=0.370 Sum_probs=30.9
Q ss_pred ccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHH
Q psy13351 741 LNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEET 776 (837)
Q Consensus 741 ~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~ 776 (837)
++...||+.+.|.|.-+.+..|++|+|.+..++.+.
T Consensus 33 vtytldgndleiritgvpeqvrkelakeaerlakef 68 (85)
T 2kl8_A 33 VTYTLDGNDLEIRITGVPEQVRKELAKEAERLAKEF 68 (85)
T ss_dssp EEEEECSSCEEEEEESCCHHHHHHHHHHHHHHHHHT
T ss_pred EEEEecCCeeEEEEecChHHHHHHHHHHHHHHHHhc
Confidence 455579999999999999999999999998887654
No 150
>1j5x_A Glucosamine-6-phosphate deaminase; structural genomics, TM0813, glucosamine-6-phosphate deamina PSI, protein structure initiative; 1.80A {Thermotoga maritima} SCOP: c.80.1.1
Probab=40.42 E-value=42 Score=35.82 Aligned_cols=47 Identities=19% Similarity=0.139 Sum_probs=32.2
Q ss_pred CCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC----CcceEEccCCC
Q psy13351 150 PDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP----DGINYVIPGND 196 (837)
Q Consensus 150 P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~----~~i~ypIP~N~ 196 (837)
||++|+++..-+ ..+++.|+..|+|+|+|++...+| ....+++|++.
T Consensus 101 ~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~vIaIT~~~~S~La~~ad~~l~~~~~e 155 (342)
T 1j5x_A 101 RGLAFLFSRTGNTTEVLLANDVLKKRNHRTIGITIEEESRLAKESDLPLVFPVRE 155 (342)
T ss_dssp SEEEEEECSSSCCHHHHHHHHHHHHTTEEEEEEESCTTSHHHHHSSEEEECCCCC
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHhcCEEEEcCCCc
Confidence 688888876544 346788899999999999865433 12345555543
No 151
>1pjq_A CYSG, siroheme synthase; rossman fold, nucleotide binding motif, SAM, NAD, phosphoserine, transferase/oxidoreductase/lyase complex; HET: SEP PGE SAH; 2.21A {Salmonella typhimurium} SCOP: c.2.1.11 c.90.1.1 e.37.1.1 PDB: 1pjs_A* 1pjt_A*
Probab=38.14 E-value=1.3e+02 Score=33.34 Aligned_cols=24 Identities=17% Similarity=-0.025 Sum_probs=19.1
Q ss_pred CCCeEEEEecchhhHHHHHHHHHH
Q psy13351 55 SKGTLLFVGTKRQARGVIANEAVR 78 (837)
Q Consensus 55 ~~~~iLfv~t~~~~~~~v~~~a~~ 78 (837)
++.++|+||....+...++.+.+.
T Consensus 11 ~~~~vlVvGgG~va~~k~~~L~~~ 34 (457)
T 1pjq_A 11 RDRDCLIVGGGDVAERKARLLLEA 34 (457)
T ss_dssp BTCEEEEECCSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCHHHHHHHHHHHhC
Confidence 578899999999888887766654
No 152
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=38.11 E-value=68 Score=28.38 Aligned_cols=62 Identities=23% Similarity=0.377 Sum_probs=46.3
Q ss_pred EEEecCCcccHHHHHHHHHhc-----CC--CccceecCCeeEEeCCCCCHHHHHHHHHHHHHHHHHHHH
Q psy13351 717 ISIQPFEKEMSSIIKKAINEA-----NL--GLNPTIQGNIIYVSIPPLTKERREEIVKLIKNITEETKI 778 (837)
Q Consensus 717 l~i~~~d~~~~~~I~kaI~~s-----~l--~~~p~~~~~~i~v~iP~~T~E~R~~l~k~~k~~~e~~k~ 778 (837)
+++..|.-..+.+.+||+.+. .+ -++...+|+.+.|.|.-+.+..|++|+|.+..+..+..+
T Consensus 3 vm~i~f~gddlea~ekalkemirqarkfagtvtytl~gn~l~i~itgvpeqvrkelakeaerl~~efni 71 (170)
T 4hhu_A 3 VMVIVFEGDDLEALEKALKEMIRQARKFAGTVTYTLSGNRLVIVITGVPEQVRKELAKEAERLKAEFNI 71 (170)
T ss_dssp EEEEEEECSCHHHHHHHHHHHHHHHHHTTCEEEEEEETTEEEEEEESCCHHHHHHHHHHHHHHHHHHTC
T ss_pred eEEEEEecCcHHHHHHHHHHHHHHHHhhcceEEEEEeCCEEEEEEeCCcHHHHHHHHHHHHHHHHhcce
Confidence 345667666777777776542 22 345567999999999999999999999999887766543
No 153
>3k9o_A Ubiquitin-conjugating enzyme E2 K; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 3k9p_A 1yla_A 2o25_A
Probab=36.91 E-value=21 Score=35.23 Aligned_cols=27 Identities=19% Similarity=-0.022 Sum_probs=25.0
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILR 252 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr 252 (837)
-|.+..++.+||..++||++.|.++|=
T Consensus 173 MGf~~~~a~~AL~~~~wd~~~A~e~L~ 199 (201)
T 3k9o_A 173 MGFDRNAVIVALSSKSWDVETATELLL 199 (201)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHcCCCHHHHHHHHh
Confidence 488899999999999999999999984
No 154
>3cvj_A Putative phosphoheptose isomerase; rossman fold, 3-layer (ABA) sandwich, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.00A {Bacillus halodurans c-125}
Probab=36.61 E-value=91 Score=31.10 Aligned_cols=30 Identities=10% Similarity=0.129 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHhccCCCeEEEEecchhhH
Q psy13351 40 YMYEKAIRYIYQLGFSKGTLLFVGTKRQAR 69 (837)
Q Consensus 40 ~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~ 69 (837)
..|.+|+..|.....+.++|.|+|+.....
T Consensus 26 ~~i~~a~~~l~~~i~~~~~I~i~G~G~S~~ 55 (243)
T 3cvj_A 26 QAIIKGAHLVSEAVMNGGRFYVFGSGHSHM 55 (243)
T ss_dssp HHHHHHHHHHHHHHHTTCCEEEEESGGGHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEcCcHHHH
Confidence 567788888887777889999999987654
No 155
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=35.96 E-value=15 Score=28.76 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=22.4
Q ss_pred CChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 228 APIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 228 ~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.....-+..|.+++||+|.|++-|-+
T Consensus 23 ld~~~I~~vL~a~~gdvd~aI~~LL~ 48 (59)
T 1wgl_A 23 MDQEVIRSVLEAQRGNKDAAINSLLQ 48 (59)
T ss_dssp SCHHHHHHHHTTTTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcCCCHHHHHHHHHc
Confidence 45566789999999999999999976
No 156
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=34.74 E-value=45 Score=29.05 Aligned_cols=32 Identities=16% Similarity=0.380 Sum_probs=26.8
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 755 PPLTKERREEIVKLIKNITEETKISIRKIRRD 786 (837)
Q Consensus 755 P~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~ 786 (837)
|.++.|.|+..++.+....++|..-|+...-+
T Consensus 29 ~~~~geerk~~i~~ie~~l~EA~ell~qMelE 60 (102)
T 1vcs_A 29 PRLPPDEKKQMVANVEKQLEEARELLEQMDLE 60 (102)
T ss_dssp GGSCTTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677999999999999999999988876544
No 157
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=34.32 E-value=49 Score=33.59 Aligned_cols=60 Identities=10% Similarity=0.016 Sum_probs=40.2
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+..+..+...+.++...+||+|. +|+..+...+++.-+ |...+.+.....|.+
T Consensus 65 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~-i~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 124 (288)
T 3gv0_A 65 GSADGVIISKIEPNDPRVRFMTERNMPFVT-HGRSDMGIEHAFHDF---DNEAYAYEAVERLAQ 124 (288)
T ss_dssp TCCSEEEEESCCTTCHHHHHHHHTTCCEEE-ESCCCSSCCCEEEEE---CHHHHHHHHHHHHHH
T ss_pred CCccEEEEecCCCCcHHHHHHhhCCCCEEE-ECCcCCCCCCcEEEe---CcHHHHHHHHHHHHH
Confidence 478999998777667788999999999996 466554444555443 344555555555443
No 158
>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}
Probab=34.02 E-value=42 Score=31.88 Aligned_cols=58 Identities=14% Similarity=0.162 Sum_probs=37.5
Q ss_pred EEeeccCccccCCCCC-CCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHc
Q psy13351 569 LKATKVDGIYNSDPNK-CLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 638 (837)
Q Consensus 569 iilTDVdGVy~~dP~~-~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~ 638 (837)
.+++||||++++.... .++.+.+..++.. |..++..+.+.|+++.|+++. ......+.
T Consensus 11 liv~D~DGtL~d~~~~~~~~g~~~~~f~~~----------D~~~L~~Lk~~Gi~~~I~Tg~--~~~~~~l~ 69 (168)
T 3ewi_A 11 LLVCNIDGCLTNGHIYVSGDQKEIISYDVK----------DAIGISLLKKSGIEVRLISER--ACSKQTLS 69 (168)
T ss_dssp EEEEECCCCCSCSCCBCCSSCCCEEEEEHH----------HHHHHHHHHHTTCEEEEECSS--CCCHHHHH
T ss_pred EEEEeCccceECCcEEEcCCCCEEEEEecC----------cHHHHHHHHHCCCEEEEEeCc--HHHHHHHH
Confidence 3578999999864321 2333444444332 234677888899999999988 45555665
No 159
>4hwg_A UDP-N-acetylglucosamine 2-epimerase; ssgcid, structural genomics, seattle structural genomics center for infectious disease, isomerase; 2.00A {Rickettsia bellii}
Probab=33.69 E-value=1.6e+02 Score=31.61 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=26.7
Q ss_pred CCCEEEEecCCCcchHHHHHhhcCCCEEEEecCC
Q psy13351 149 IPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTN 182 (837)
Q Consensus 149 ~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn 182 (837)
.||+|++.+......+..-|.++|||++ .+...
T Consensus 94 kPD~Vlv~gd~~~~~aalaA~~~~IPv~-h~eag 126 (385)
T 4hwg_A 94 KPDAVLFYGDTNSCLSAIAAKRRKIPIF-HMEAG 126 (385)
T ss_dssp CCSEEEEESCSGGGGGHHHHHHTTCCEE-EESCC
T ss_pred CCcEEEEECCchHHHHHHHHHHhCCCEE-EEeCC
Confidence 8999999987777777889999999964 55543
No 160
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I}
Probab=32.68 E-value=2e+02 Score=29.57 Aligned_cols=68 Identities=10% Similarity=-0.043 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCCchhhHhHHHHHHHHHHHHHHHH
Q psy13351 756 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLK-NKILSVDNEYRAQYDIQKLTDKFILEI 823 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k-~~~~s~D~~~~~~~~iq~l~~~~~~~i 823 (837)
.+++|.|+.+...+++..+..+...+..-.++++.+++..- --.+++++.....+..+.+.++|.++.
T Consensus 219 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 287 (301)
T 2pfz_A 219 ALDPATQQALKKAGAQAEERGWKLSQEKNSWYKEQLAKNGMAIIAPTAELKSGLTEVGKRMLDDWLKKA 287 (301)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 68889999998888888777777777666666666653210 013577778889999999999998765
No 161
>2aml_A SIS domain protein; 46906266, LMO0035 protein, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=32.51 E-value=83 Score=33.89 Aligned_cols=37 Identities=16% Similarity=0.175 Sum_probs=28.5
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhc-CCCEEEEecCCCC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKL-NIPIIGVVDTNHS 184 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l-~IP~i~l~Dtn~~ 184 (837)
...|++|+++..-+ ..+++.|+.. |.|+|+|++...+
T Consensus 96 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~~Ga~vIaIT~~~~S 137 (373)
T 2aml_A 96 SHLDLVIGISQSGQSTSTISALERVKKEASVPVVALTSDVTS 137 (373)
T ss_dssp TTCCEEEEECSSSCBHHHHHHHHHHHHHCCCCEEEEESCTTS
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHhCCCcEEEEECCCCC
Confidence 46788888876544 3567888888 9999999986543
No 162
>3u65_B TP33 protein; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; HET: EDO; 1.40A {Treponema pallidum subsp} PDB: 4di4_B* 4di3_D*
Probab=32.19 E-value=1.3e+02 Score=31.73 Aligned_cols=68 Identities=6% Similarity=0.123 Sum_probs=50.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-hcCCCCchhhHhHHHHHHHHHHHHHHHH
Q psy13351 756 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLL-KNKILSVDNEYRAQYDIQKLTDKFILEI 823 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~-k~~~~s~D~~~~~~~~iq~l~~~~~~~i 823 (837)
.|++|.|+.+.+.+++..+..+...+..-.++++.+++.. +-..+++++.....+..+.+.+.+.++.
T Consensus 239 ~L~~e~q~~i~~a~~e~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 307 (328)
T 3u65_B 239 RIPSRYHDAMLQAATRVRQRLANNLETLDRECSNNIQKAGVSIVHLTPQEIQEWRTEFAADVKRIQARL 307 (328)
T ss_dssp TSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEeCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999998888888887777777766665421 1114788888899988888887555443
No 163
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=31.65 E-value=71 Score=30.10 Aligned_cols=38 Identities=16% Similarity=0.265 Sum_probs=27.8
Q ss_pred CCCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC
Q psy13351 148 IIPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP 185 (837)
Q Consensus 148 ~~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~ 185 (837)
..-|++|+++...+. .+++.|++.|+|+|+|+|...+|
T Consensus 95 ~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~ 136 (183)
T 2xhz_A 95 TPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESS 136 (183)
T ss_dssp CTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSH
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCh
Confidence 356888888765433 35677889999999999876544
No 164
>3fkj_A Putative phosphosugar isomerases; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.12A {Salmonella typhimurium LT2}
Probab=31.52 E-value=1e+02 Score=32.94 Aligned_cols=100 Identities=13% Similarity=0.063 Sum_probs=54.7
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCCC--CcceE--EccCC---Ccchhhhh--hhhhhchhhhh
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHSP--DGINY--VIPGN---DDSAKSIA--LYTKGIVDAFL 214 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~y--pIP~N---~~s~~si~--~~~~~l~~ai~ 214 (837)
...|++|+++..-+ -.+++.|+..|.|+|+|++...+| +..|+ ++|+. .+..-+.. ..+.+|+-.+.
T Consensus 88 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~Ga~~iaIT~~~~S~La~~ad~~l~~~~g~g~~e~~~~t~~~~~l~llal~l~ 167 (347)
T 3fkj_A 88 GKNSVVILASQQGNTAETVAAARVAREKGAATIGLVYQPDTPLCEYSDYIIEYQWARYPETVDPAQQKAAYSLWLALEIL 167 (347)
T ss_dssp STTEEEEEEESSSCCHHHHHHHHHHHHHTCEEEEEESSTTCHHHHTCSEEEECBCCCTTSCCCGGGBHHHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCChHHhhcCeEEEeccCCCCCccchhHHHHHHHHHHHHHHH
Confidence 35678888865543 346788889999999999765433 12444 44554 22111211 12222222221
Q ss_pred cccchhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 215 ~g~~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
..+ . ......+..++|......+++++++..+.
T Consensus 168 ~~~------~-~~~~~~~~~~~l~~lp~~~~~~l~~~~~~ 200 (347)
T 3fkj_A 168 AQT------E-GYAQYDELVSAFGRFSDVVHGAQRQVQED 200 (347)
T ss_dssp HHH------T-CCTTHHHHHHHHHTHHHHHHHHHHHTHHH
T ss_pred HHh------C-CHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 111 1 22234555677777777778887776543
No 165
>3g68_A Putative phosphosugar isomerase; SIS domain, double-SIS DOMA protein, structural genomics, joint center for structural G JCSG; HET: MSE CIT; 1.80A {Clostridium difficile}
Probab=31.37 E-value=1.3e+02 Score=32.19 Aligned_cols=47 Identities=13% Similarity=0.113 Sum_probs=32.5
Q ss_pred CCCEEEEecCCCcc----hHHHHHhhcCCCEEEEecCCCCC--CcceEEccCC
Q psy13351 149 IPDAIFIIDVGYHK----GAVSEAIKLNIPIIGVVDTNHSP--DGINYVIPGN 195 (837)
Q Consensus 149 ~P~~vii~~~~~~~----~ai~Ea~~l~IP~i~l~Dtn~~~--~~i~ypIP~N 195 (837)
..|++|+++..-+. .+++.|+..|.|+|+|++...+| +..|+.|+..
T Consensus 82 ~~dlvI~iS~SG~T~e~l~a~~~ak~~ga~~iaIT~~~~S~La~~aD~~l~~~ 134 (352)
T 3g68_A 82 ENTLVVGVSQGGSSYSTYNAMKLAEDKGCKIASMAGCKNALIDEISDYILTVN 134 (352)
T ss_dssp TTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTCGGGGGCSEECCCC
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCChHHHhCCEEEEeC
Confidence 67788888655443 57789999999999999754333 2356666543
No 166
>2nrr_A Uvrabc system protein C; UVRC, endonuclase, NER, hydrolase; 1.20A {Thermotoga maritima}
Probab=30.68 E-value=25 Score=33.29 Aligned_cols=33 Identities=21% Similarity=0.391 Sum_probs=20.9
Q ss_pred CCCCEEEEecCCCcchHHHHHh-h--cCCCEEEEec
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAI-K--LNIPIIGVVD 180 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~-~--l~IP~i~l~D 180 (837)
.+||+++|=.-.-.-.+..|+. . +.||++|++=
T Consensus 78 ~~PDLilIDGGkgQl~aA~~vl~elg~~i~v~glAK 113 (159)
T 2nrr_A 78 PLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAK 113 (159)
T ss_dssp CCCSEEEESSCHHHHHHHHHHHHHTTCCCCEEEEC-
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCCccEEEEEc
Confidence 4999887654434444444444 2 4699999985
No 167
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=30.63 E-value=76 Score=31.78 Aligned_cols=59 Identities=15% Similarity=0.189 Sum_probs=39.9
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+..... ...+.++...+||+|.+ |+..+...+++.-+ |...+.+.....|.+
T Consensus 62 ~~vdgiIi~~~~~-~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 120 (276)
T 3jy6_A 62 RGFDGLILQSFSN-PQTVQEILHQQMPVVSV-DREMDACPWPQVVT---DNFEAAKAATTAFRQ 120 (276)
T ss_dssp TTCSEEEEESSCC-HHHHHHHHTTSSCEEEE-SCCCTTCSSCEEEC---CHHHHHHHHHHHHHT
T ss_pred CCCCEEEEecCCc-HHHHHHHHHCCCCEEEE-ecccCCCCCCEEEE---ChHHHHHHHHHHHHH
Confidence 4789999987666 77888889999999976 55544334555444 445555655555544
No 168
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=30.46 E-value=1.4e+02 Score=31.87 Aligned_cols=55 Identities=11% Similarity=0.110 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHH-HHcCCCcccCcccCCCCCC
Q psy13351 35 LEKTLYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEA-VRAGMPFIDQRWLGGLLTN 95 (837)
Q Consensus 35 l~~T~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a-~~~~~~~v~~rw~~G~LTN 95 (837)
.-||...+.-|.++.. +++.++|++.--....++..+. ..++..+ .++..|.|+.
T Consensus 57 ~GKTt~al~ia~~~a~----~g~~Vl~fSlEms~~ql~~Rlls~~~~v~~--~~l~~g~Ls~ 112 (338)
T 4a1f_A 57 MGKTSLMMNMVLSALN----DDRGVAVFSLEMSAEQLALRALSDLTSINM--HDLESGRLDD 112 (338)
T ss_dssp SCHHHHHHHHHHHHHH----TTCEEEEEESSSCHHHHHHHHHHHHHCCCH--HHHHHTCCCH
T ss_pred CCHHHHHHHHHHHHHH----cCCeEEEEeCCCCHHHHHHHHHHHhhCCCH--HHHhcCCCCH
Confidence 4588877777766654 7889999998877777766653 3344433 2345577765
No 169
>3h5t_A Transcriptional regulator, LACI family; DNA-dependent, protein structure initiative II(PSI II), NYSGXRC, 11232D), structural genomics; 2.53A {Corynebacterium glutamicum}
Probab=30.11 E-value=3e+02 Score=28.62 Aligned_cols=60 Identities=18% Similarity=0.356 Sum_probs=40.5
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+.....+...+.++...+||+|.+ |...+...+++.-+ |...+.+.....|.+
T Consensus 127 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~~ 186 (366)
T 3h5t_A 127 AAVDGVVIYSVAKGDPHIDAIRARGLPAVIA-DQPAREEGMPFIAP---NNRKAIAPAAQALID 186 (366)
T ss_dssp CCCSCEEEESCCTTCHHHHHHHHHTCCEEEE-SSCCSCTTCCEEEE---CHHHHTHHHHHHHHH
T ss_pred CCCCEEEEecCCCChHHHHHHHHCCCCEEEE-CCccCCCCCCEEEe---ChHHHHHHHHHHHHH
Confidence 4788888887766677888899999999965 66554444555433 445555555555544
No 170
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=28.81 E-value=42 Score=31.73 Aligned_cols=59 Identities=22% Similarity=0.222 Sum_probs=36.5
Q ss_pred EeeccCccccCCCC-CCCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHc
Q psy13351 570 KATKVDGIYNSDPN-KCLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 638 (837)
Q Consensus 570 ilTDVdGVy~~dP~-~~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~ 638 (837)
+++|+||.+..... ..++.+.+..+... +..+++.+.+.|+++.|+++..+..+...+.
T Consensus 11 i~~DlDGTL~~~~~~~~~~~~~~~~~~~~----------~~~~l~~L~~~G~~~~i~Tg~~~~~~~~~~~ 70 (180)
T 1k1e_A 11 VITDVDGVLTDGQLHYDANGEAIKSFHVR----------DGLGIKMLMDADIQVAVLSGRDSPILRRRIA 70 (180)
T ss_dssp EEEECTTTTSCSEEEEETTEEEEEEEEHH----------HHHHHHHHHHTTCEEEEEESCCCHHHHHHHH
T ss_pred EEEeCCCCcCCCCeeeccCcceeeeeccc----------hHHHHHHHHHCCCeEEEEeCCCcHHHHHHHH
Confidence 47899998864211 11123333333332 2346777788999999999987766665554
No 171
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=28.77 E-value=45 Score=30.59 Aligned_cols=59 Identities=14% Similarity=0.118 Sum_probs=35.9
Q ss_pred EeeccCccccCCCCC-CCCceeccccCHHHHHHhccccchHHHHHHHHhCCCCEEEEEccCcchHHHHHc
Q psy13351 570 KATKVDGIYNSDPNK-CLSAIIYKKITFDEVISKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIE 638 (837)
Q Consensus 570 ilTDVdGVy~~dP~~-~~~a~~I~~is~~e~~~~G~~v~~~~Aa~~a~~~gi~v~I~ng~~~~~i~~al~ 638 (837)
+++|+||.+...... .+..+.+..+... ...+++.+.+.|+++.|+++.....+...+.
T Consensus 12 v~~DlDGTL~~~~~~~~~~~~~~~~~~~~----------~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~ 71 (162)
T 2p9j_A 12 LIMDIDGVLTDGKLYYTEHGETIKVFNVL----------DGIGIKLLQKMGITLAVISGRDSAPLITRLK 71 (162)
T ss_dssp EEECCTTTTSCSEEEEETTEEEEEEEEHH----------HHHHHHHHHTTTCEEEEEESCCCHHHHHHHH
T ss_pred EEEecCcceECCceeecCCCceeeeeccc----------HHHHHHHHHHCCCEEEEEeCCCcHHHHHHHH
Confidence 478999988643211 1122223333221 1356777788899999999887666666654
No 172
>2p4v_A Transcription elongation factor GREB; transcript cleavage, GRE-factors, RNA polymerase; 2.60A {Escherichia coli}
Probab=28.07 E-value=1.5e+02 Score=27.77 Aligned_cols=67 Identities=13% Similarity=0.127 Sum_probs=49.9
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 757 LTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830 (837)
Q Consensus 757 ~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~~~~~~id~~~~~k 830 (837)
||+|-.+.|-..+..+- +.-|.+..+.++.....+.+||+-.+.+-++=|...+..+..+++.++..
T Consensus 6 lT~~g~~~L~~EL~~L~-------~~~R~~i~~~i~~Ar~~GDlsENaeY~aak~~q~~~e~rI~~L~~~L~~A 72 (158)
T 2p4v_A 6 VTREGYEKLKQELNYLW-------REERPEVTKKVTWAASLGDRSENADYQYNKKRLREIDRRVRYLTKCMENL 72 (158)
T ss_dssp ECHHHHHHHHHHHHHHH-------HTHHHHHHHHHHHHHHHSCTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccHHHHHHHHHHHHHHH-------hcchHHHHHHHHHHHhCCCcccchhHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88888888777666542 22344555555555556779999988888999999999999999988654
No 173
>3dfz_A SIRC, precorrin-2 dehydrogenase; NAD dehydrogenase, cobalamin biosynthesis, NAD, oxidoreducta porphyrin biosynthesis; 2.30A {Bacillus megaterium}
Probab=27.51 E-value=59 Score=32.55 Aligned_cols=41 Identities=20% Similarity=0.036 Sum_probs=22.3
Q ss_pred CCEEEEe--cCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCC
Q psy13351 150 PDAIFII--DVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGN 195 (837)
Q Consensus 150 P~~vii~--~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N 195 (837)
.|+||.. |+..|...-..|. .||| |+.-.+|++-||..|+-
T Consensus 92 adLVIaAT~d~~~N~~I~~~ak-~gi~----VNvvD~p~~~~f~~Pai 134 (223)
T 3dfz_A 92 VFFIVVATNDQAVNKFVKQHIK-NDQL----VNMASSFSDGNIQIPAQ 134 (223)
T ss_dssp CSEEEECCCCTHHHHHHHHHSC-TTCE----EEC-----CCSEECCEE
T ss_pred CCEEEECCCCHHHHHHHHHHHh-CCCE----EEEeCCcccCeEEEeeE
Confidence 5666654 3334455556666 9999 33334566777777765
No 174
>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}
Probab=27.25 E-value=1.1e+02 Score=30.77 Aligned_cols=62 Identities=16% Similarity=0.052 Sum_probs=42.5
Q ss_pred CCCEEEEecCCCcchHHHHHhhcC---CCEEEEecCCC---------CCCcceEEccCCCcchhhhhhhhhhch
Q psy13351 149 IPDAIFIIDVGYHKGAVSEAIKLN---IPIIGVVDTNH---------SPDGINYVIPGNDDSAKSIALYTKGIV 210 (837)
Q Consensus 149 ~P~~vii~~~~~~~~ai~Ea~~l~---IP~i~l~Dtn~---------~~~~i~ypIP~N~~s~~si~~~~~~l~ 210 (837)
.|+.||+.+-..-.-+++.+...| |.++|+-|+.. .|...++..|.-.-...++.+++..+.
T Consensus 191 ~~~ai~~~~d~~a~g~~~al~~~g~~di~vvg~d~~~~~~~~i~~~~~p~lttv~~~~~~~g~~av~~l~~~i~ 264 (291)
T 3l49_A 191 DVGAIWACWDVPMIGATQALQAAGRTDIRTYGVDGSPEFVEMVADPESPAGAVAAQQPSEIGKLAVQNVARHLA 264 (291)
T ss_dssp SCCEEEESSHHHHHHHHHHHHHTTCCSCEEEEEECCHHHHHHHHCTTSCEEEEEECCHHHHHHHHHHHHHHHHT
T ss_pred CcCEEEECCCchHHHHHHHHHHcCCCCeEEEEecCCHHHHHHHHCCCCCeEEEEecCHHHHHHHHHHHHHHHhc
Confidence 689998775433334455555555 58999877653 566778888877777778877776664
No 175
>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}
Probab=27.13 E-value=2.9e+02 Score=27.62 Aligned_cols=59 Identities=14% Similarity=0.200 Sum_probs=36.3
Q ss_pred CCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCCCCC-cceEEccCCCcchhhhhhhhhhchh
Q psy13351 149 IPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSPD-GINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 149 ~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~~~~-~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
-+|.+|+.....+ ...++++...+||+|.+ |++.+.. .+++.-+ |...+.+.....|.+
T Consensus 61 ~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---d~~~~g~~~~~~l~~ 122 (305)
T 3g1w_A 61 NPAGIAISAIDPVELTDTINKAVDAGIPIVLF-DSGAPDSHAHSFLGT---NNYNAGMNAAYKMAE 122 (305)
T ss_dssp CCSEEEECCSSTTTTHHHHHHHHHTTCCEEEE-SSCCTTSCCSCEEEC---CHHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEE-CCCCCCCceeEEECc---CHHHHHHHHHHHHHH
Confidence 6888888754433 56889999999999876 5444322 3555443 334555555544444
No 176
>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A
Probab=27.05 E-value=2.8e+02 Score=23.23 Aligned_cols=35 Identities=11% Similarity=0.265 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHH
Q psy13351 773 TEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQK 814 (837)
Q Consensus 773 ~e~~k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~ 814 (837)
-.+-+..|+++|....+.|..- .+++.+++++|+.
T Consensus 35 rqkekEqL~~LKkkl~~el~~h-------~~ei~~le~~i~r 69 (84)
T 1gmj_A 35 RARAKEQLAALKKHKENEISHH-------AKEIERLQKEIER 69 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHH
Confidence 4445566666666655555443 3444555555533
No 177
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=26.06 E-value=76 Score=32.25 Aligned_cols=60 Identities=17% Similarity=0.210 Sum_probs=40.4
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+..+..+...+.++...+||+|.+ |...+...++|.-+ |...+.+.....|.+
T Consensus 64 ~~vdGiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~~~~a~~~L~~ 123 (294)
T 3qk7_A 64 RRVDALIVAHTQPEDFRLQYLQKQNFPFLAL-GRSHLPKPYAWFDF---DNHAGASLAVKRLLE 123 (294)
T ss_dssp TCCSEEEECSCCSSCHHHHHHHHTTCCEEEE-SCCCCSSCCEEEEE---CHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHHHhCCCCEEEE-CCCCCCCCCCEEEc---ChHHHHHHHHHHHHH
Confidence 4789999887776667888999999999965 55444444555443 445555655555544
No 178
>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}
Probab=26.01 E-value=77 Score=32.04 Aligned_cols=61 Identities=18% Similarity=0.193 Sum_probs=38.5
Q ss_pred CCCCEEEEecCCCc--chHHHHHhhcCCCEEEEecCCCCC-CcceEEccCCCcchhhhhhhhhhchhh
Q psy13351 148 IIPDAIFIIDVGYH--KGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGNDDSAKSIALYTKGIVDA 212 (837)
Q Consensus 148 ~~P~~vii~~~~~~--~~ai~Ea~~l~IP~i~l~Dtn~~~-~~i~ypIP~N~~s~~si~~~~~~l~~a 212 (837)
+.+|.+|+.....+ ..+++++...+||+|.+ |++.+. ..+++.-+ |...+.+.....|.+.
T Consensus 68 ~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~~V~~---D~~~~g~~a~~~l~~~ 131 (304)
T 3gbv_A 68 EQPDGVMFAPTVPQYTKGFTDALNELGIPYIYI-DSQIKDAPPLAFFGQ---NSHQSGYFAARMLMLL 131 (304)
T ss_dssp TCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEE-SSCCTTSCCSEEEEC---CHHHHHHHHHHHHHHH
T ss_pred cCCCEEEECCCChHHHHHHHHHHHHCCCeEEEE-eCCCCCCCceEEEec---ChHHHHHHHHHHHHHH
Confidence 47899998866543 45688899999999876 444332 23555544 3444555555555444
No 179
>4e81_A Chaperone protein DNAK; chaperone; 1.90A {Escherichia coli} PDB: 3dpp_A* 3dpq_A* 3qnj_A 3dpo_A 1dkz_A 1dky_A 1dkx_A 1bpr_A 2bpr_A 1dg4_A
Probab=25.96 E-value=3.1e+02 Score=27.05 Aligned_cols=60 Identities=10% Similarity=0.153 Sum_probs=36.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHhhhhcCCCCchhhHhHHHHHHHHHH
Q psy13351 756 PLTKERREEIVKLIKNITEET---------KISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTD 817 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~---------k~~iR~iR~~~~~~~kk~~k~~~~s~D~~~~~~~~iq~l~~ 817 (837)
.+|+|--+++++.+.++.++= |+.+...-.++.+.++... ..+++++..++++.++++.+
T Consensus 118 ~Ls~eeI~~m~~~a~~~~~eD~~~r~~~e~kn~le~~i~~~~~~l~~~~--~~l~~~~k~~i~~~l~~~~~ 186 (219)
T 4e81_A 118 GLNEDEIQKMVRDAEANAEADRKFEELVQTRNQGDHLLHSTRKQVEEAG--DKLPADDKTAIESALTALET 186 (219)
T ss_dssp SCCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHG--GGSCHHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hhCCHHHHHHHHHHHHHHHH
Confidence 489999999999887766532 2222233333333333321 23788888888888877654
No 180
>2nrt_A Uvrabc system protein C; UVRC, endonuclease, RNAse H, helix hairpin helix, NER, hydrolase; 1.50A {Thermotoga maritima} PDB: 2nrv_A 2nrw_A 2nrx_A 2nrz_A
Probab=25.84 E-value=47 Score=33.24 Aligned_cols=57 Identities=14% Similarity=0.253 Sum_probs=31.4
Q ss_pred CCCCEEEEecCCCcchHHHHHh---hcCCCEEEEecC-CC--CCCcceEEccCCCcchhhhhhh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAI---KLNIPIIGVVDT-NH--SPDGINYVIPGNDDSAKSIALY 205 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~---~l~IP~i~l~Dt-n~--~~~~i~ypIP~N~~s~~si~~~ 205 (837)
.+||+++|=.-.-.-.+..|+. -+.||++|++=- .. .|.. -+++|.|+.....+.-+
T Consensus 83 ~~PDLiliDGGkgQl~~a~~vl~~lg~~i~v~glaK~~e~l~~~~~-~~~l~~~s~~l~llq~i 145 (220)
T 2nrt_A 83 PLPNLLFVDGGIGQVNAAIEALKEIGKDCPVVGLAKKEETVVFENR-EIHLPHDHPVLRLLVQI 145 (220)
T ss_dssp CCCSEEEESSSHHHHHHHHHHHHHTTCCCCEEEECTTTCCEEETTE-EECCCTTCHHHHHHHHH
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHHcCCCCeEEEEECCCcEEEeCCC-eeecCCCCHHHHhhhhh
Confidence 4999887654444444444444 246999999852 21 1212 35556655544444333
No 181
>1moq_A Glucosamine 6-phosphate synthase; glutamine amidotransferase; HET: GLP MES; 1.57A {Escherichia coli} SCOP: c.80.1.1 PDB: 1mor_A* 1mos_A*
Probab=25.64 E-value=89 Score=33.53 Aligned_cols=37 Identities=5% Similarity=0.050 Sum_probs=27.6
Q ss_pred CCCCEEEEecCCCc----chHHHHHhhcC-CCEEEEecCCCC
Q psy13351 148 IIPDAIFIIDVGYH----KGAVSEAIKLN-IPIIGVVDTNHS 184 (837)
Q Consensus 148 ~~P~~vii~~~~~~----~~ai~Ea~~l~-IP~i~l~Dtn~~ 184 (837)
...|++|+++..-+ ..+++.|+..| +|+|+|++...+
T Consensus 98 ~~~dlvI~iS~SG~T~e~l~a~~~ak~~G~a~viaIT~~~~S 139 (368)
T 1moq_A 98 RRNSLMITLSQSGETADTLAGLRLSKELGYLGSLAICNVPGS 139 (368)
T ss_dssp CTTEEEEEEESSSCCHHHHHHHHHHTTTTCSEEEEEESSTTC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCCeEEEEECCCCC
Confidence 46788888875543 34678888999 999999886543
No 182
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure initiative, MCS midwest center for structural genomics, unknown function; 2.00A {Thermoplasma acidophilum}
Probab=25.33 E-value=1.6e+02 Score=28.03 Aligned_cols=70 Identities=19% Similarity=0.150 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHcCCceeEee--hhchhhhhhccchHHHHHHHhCCCEEEEeCCCCCCCCcchHHHHHHHHHcCCcEEE
Q psy13351 493 INSLALFDILNKSGIISHVMS--AISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGNPFFTTDTTAALRAAEIKAEIIL 569 (837)
Q Consensus 493 ~~~~ll~~~L~~~gi~a~~l~--~~~~~~~~~~~~~~~i~~ll~~g~VPVv~G~~G~~~~s~D~lAa~lA~~L~Ad~li 569 (837)
-|+..|+..|...|+...... +.+...+ .+.+..+++...+.|++|+.|.. ..|.+.-.+|..++.+...
T Consensus 23 tN~~~l~~~L~~~G~~v~~~~iv~Dd~~~I-----~~~l~~a~~~~DlVittGG~g~~--~~D~T~ea~a~~~~~~l~~ 94 (172)
T 3kbq_A 23 TNAAFIGNFLTYHGYQVRRGFVVMDDLDEI-----GWAFRVALEVSDLVVSSGGLGPT--FDDMTVEGFAKCIGQDLRI 94 (172)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHH-----HHHHHHHHHHCSEEEEESCCSSS--TTCCHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCHHHH-----HHHHHHHHhcCCEEEEcCCCcCC--cccchHHHHHHHcCCCeee
Confidence 367788888999998764422 2222111 23455566667889998876542 3788888889999876544
No 183
>3k6g_A Telomeric repeat-binding factor 2-interacting Pro; helix, chromosomal protein, nucleus, phosphoprotein, telomer cycle, DNA-binding, protein binding; 1.95A {Homo sapiens}
Probab=24.92 E-value=59 Score=28.20 Aligned_cols=36 Identities=17% Similarity=0.267 Sum_probs=31.5
Q ss_pred chhhhhcccCCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 218 TVGELRSKTLAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 218 ~v~~lr~~t~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
.+++|-.++...+...=+||-.+.||++.|-.+|+.
T Consensus 16 ~i~~lMeef~~DL~sVTqAlLK~SGel~at~~fL~~ 51 (111)
T 3k6g_A 16 IIRQLMEKFNLDLSTVTQAFLKNSGELEATSAFLAS 51 (111)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHccccHHHHHHHHhC
Confidence 345667778889999999999999999999999987
No 184
>3lft_A Uncharacterized protein; ABC, ATPase, cassette, L-Trp, PSI, MCSG, structural genomics center for structural genomics; HET: MSE TRP; 1.35A {Streptococcus pneumoniae}
Probab=24.55 E-value=1.2e+02 Score=30.87 Aligned_cols=58 Identities=16% Similarity=0.063 Sum_probs=39.8
Q ss_pred CCCEEEEecCCCcchH------HHH-HhhcCCCEEEEecCC-CCCCcceEEccCCCcchhhhhhhhhhc
Q psy13351 149 IPDAIFIIDVGYHKGA------VSE-AIKLNIPIIGVVDTN-HSPDGINYVIPGNDDSAKSIALYTKGI 209 (837)
Q Consensus 149 ~P~~vii~~~~~~~~a------i~E-a~~l~IP~i~l~Dtn-~~~~~i~ypIP~N~~s~~si~~~~~~l 209 (837)
.||.||+.+ |..| +++ +...+||++|+-|.. ..+.+.++..|.-.-...+..++..+|
T Consensus 186 ~~dai~~~~---D~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~~~Lttv~~~~~~~G~~Aa~~l~~~l 251 (295)
T 3lft_A 186 KVDAIWVPI---DNTIASGFPTVVSSNQSSKKPIYPSATAMVEVGGLASVVIDQHDLGVATGKMIVQVL 251 (295)
T ss_dssp TCSEEEECS---CHHHHHTHHHHHHHTTTTCCCEEESSHHHHTTTCCEEEECCHHHHHHHHHHHHHHHH
T ss_pred cCCEEEECC---chhHHHHHHHHHHHHHHcCCCEEeCCHHHHhcCcEEEEecCHHHHHHHHHHHHHHHH
Confidence 699998864 3333 222 344689999997655 456778888887777777777776655
No 185
>2dhy_A CUE domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.89 E-value=46 Score=26.80 Aligned_cols=34 Identities=9% Similarity=0.011 Sum_probs=25.2
Q ss_pred hhhhccc-CCChHHHHHHHHHhhccHHHHHHHHHH
Q psy13351 220 GELRSKT-LAPIMECKKALIEANGKLSKAEEILRI 253 (837)
Q Consensus 220 ~~lr~~t-~~~~~~~k~al~~~~~d~~~A~~~Lr~ 253 (837)
..|+... ......-+..|..++||++.|++-|-+
T Consensus 23 ~~L~~MFP~lD~~vI~~vL~a~~G~vd~aId~LL~ 57 (67)
T 2dhy_A 23 DDFKTMFPNMDYDIIECVLRANSGAVDATIDQLLQ 57 (67)
T ss_dssp HHHHHHCSSSCHHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHcCCCHHHHHHHHHh
Confidence 3344433 345566789999999999999998865
No 186
>2poc_A D-fructose-6- PH, isomerase domain of glutamine-fructose-6-phosphat transaminase (isomerizing); glucosamine-6-phosphate synthase; HET: BG6 UD1; 1.80A {Candida albicans} PDB: 2put_A* 2puv_A* 2puw_A*
Probab=23.04 E-value=40 Score=36.39 Aligned_cols=36 Identities=14% Similarity=0.130 Sum_probs=26.4
Q ss_pred CCCEEEEecCCCc----chHHHHHhhcCCCEEEEecCCCC
Q psy13351 149 IPDAIFIIDVGYH----KGAVSEAIKLNIPIIGVVDTNHS 184 (837)
Q Consensus 149 ~P~~vii~~~~~~----~~ai~Ea~~l~IP~i~l~Dtn~~ 184 (837)
.-|++|+++..-+ ..+++.|+..|.|+|+|++...+
T Consensus 97 ~~dlvI~iS~SG~T~e~l~a~~~Ak~~Ga~~iaIT~~~~S 136 (367)
T 2poc_A 97 RDDTCVFVSQSGETADSILALQYCLERGALTVGIVNSVGS 136 (367)
T ss_dssp TTEEEEEEESSSCCHHHHHHHHHHHHTTCEEEEEESSTTS
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCC
Confidence 4567777765433 34678899999999999986543
No 187
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=22.88 E-value=95 Score=31.28 Aligned_cols=60 Identities=12% Similarity=0.162 Sum_probs=37.6
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+..+..+...+.++...+||+|.+ |+..+...+++.-+ |...+.+.....|.+
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 122 (287)
T 3bbl_A 63 GNVDGFVLSSINYNDPRVQFLLKQKFPFVAF-GRSNPDWDFAWVDI---DGTAGTRQAVEYLIG 122 (287)
T ss_dssp TCCSEEEECSCCTTCHHHHHHHHTTCCEEEE-SCCSTTCCCCEEEE---CHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeecCCCcHHHHHHHhcCCCEEEE-CCcCCCCCCCEEEe---ccHHHHHHHHHHHHH
Confidence 4689898876655556788888899999986 54433223444332 445555555555544
No 188
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=22.48 E-value=87 Score=31.94 Aligned_cols=60 Identities=10% Similarity=0.022 Sum_probs=39.7
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+..+..+...+.++...+||+|.+ |+..+...+++.-+ |...+.+.....|.+
T Consensus 82 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~i-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 141 (305)
T 3huu_A 82 KSVDGFILLYSLKDDPIEHLLNEFKVPYLIV-GKSLNYENIIHIDN---DNIDAAYQLTQYLYH 141 (305)
T ss_dssp TCCSEEEESSCBTTCHHHHHHHHTTCCEEEE-SCCCSSTTCCEEEC---CHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCcCCcHHHHHHHHcCCCEEEE-CCCCcccCCcEEEe---CHHHHHHHHHHHHHH
Confidence 4789999887666667888899999999875 55544444555544 344555555554443
No 189
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I}
Probab=22.18 E-value=2.5e+02 Score=28.73 Aligned_cols=68 Identities=12% Similarity=0.005 Sum_probs=48.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh-cCCCCchhhHhHHHHHHHHHHHHHHHH
Q psy13351 756 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLK-NKILSVDNEYRAQYDIQKLTDKFILEI 823 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k-~~~~s~D~~~~~~~~iq~l~~~~~~~i 823 (837)
.+++|.|+.+...+++..+......+..-.++++.+++..- --.+++++.....+..+.+.++|.++.
T Consensus 220 ~L~~~~q~~i~~a~~~a~~~~~~~~~~~~~~~~~~l~~~G~~v~~~~~e~~~~~~~~~~~v~~~~~~~~ 288 (301)
T 2pfy_A 220 RLPAEVRQAVLDAGAKAEIRGWQTARAKTRELTDTLARNGMSVEPLPPQLAKELQAIGATMVSDWSKKA 288 (301)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEECCHHHHHHHHHHHHHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEecCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 57888998888888887777777776666666665543210 012577778888899999999987665
No 190
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=21.87 E-value=1e+02 Score=30.58 Aligned_cols=60 Identities=18% Similarity=0.267 Sum_probs=38.4
Q ss_pred CCCCEEEEecCC-CcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVG-YHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~-~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+-+|.+|+.... .+...+.++...+||+|.+ |+..+...+++.-+ |...+.+.....|.+
T Consensus 57 ~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~L~~ 117 (272)
T 3o74_A 57 RRCDALFVASCLPPEDDSYRELQDKGLPVIAI-DRRLDPAHFCSVIS---DDRDASRQLAASLLS 117 (272)
T ss_dssp TTCSEEEECCCCCSSCCHHHHHHHTTCCEEEE-SSCCCTTTCEEEEE---CHHHHHHHHHHHHHT
T ss_pred cCCCEEEEecCccccHHHHHHHHHcCCCEEEE-ccCCCccccCEEEE---chHHHHHHHHHHHHH
Confidence 468888887654 3567888999999999965 55544444555443 344455555544433
No 191
>1zda_A Mini protein A domain, Z38; IGG binding domain, protein A mimic; NMR {Synthetic construct} SCOP: k.13.1.1 PDB: 1zdb_A
Probab=21.56 E-value=22 Score=24.96 Aligned_cols=19 Identities=32% Similarity=0.522 Sum_probs=16.7
Q ss_pred EeCCCCCHHHHHHHHHHHH
Q psy13351 752 VSIPPLTKERREEIVKLIK 770 (837)
Q Consensus 752 v~iP~~T~E~R~~l~k~~k 770 (837)
+.+|-+|+|.|...++.+|
T Consensus 18 Lh~~nLtEeQrn~yI~slk 36 (38)
T 1zda_A 18 LHDPNLNEEQRNAKIKSIR 36 (38)
T ss_dssp HSCSSSCTTHHHHHHHHHS
T ss_pred HcCCCCCHHHHHhHHHHhh
Confidence 5789999999999998876
No 192
>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}
Probab=21.52 E-value=91 Score=31.03 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=37.0
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+.....+...+.++...+||+|.+ |+..+...+++.-+ |.....+.....|.+
T Consensus 58 ~~vdgii~~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---d~~~~~~~a~~~L~~ 117 (275)
T 3d8u_A 58 SRPAGVVLFGSEHSQRTHQLLEASNTPVLEI-AELSSKASYLNIGV---DHFEVGKACTRHLIE 117 (275)
T ss_dssp SCCCCEEEESSCCCHHHHHHHHHHTCCEEEE-SSSCSSSSSEEECB---CHHHHHHHHHHHHHT
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEE-eeccCCCCCCEEEE---ChHHHHHHHHHHHHH
Confidence 4678888886655556788888899999987 55433333444333 344555555554443
No 193
>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*
Probab=21.41 E-value=3.3e+02 Score=27.62 Aligned_cols=60 Identities=17% Similarity=0.139 Sum_probs=35.9
Q ss_pred CCCEEEEecCCC--cchHHHHHhhcCCCEEEEecCCCCC-CcceEEccCCCcchhhhhhhhhhchh
Q psy13351 149 IPDAIFIIDVGY--HKGAVSEAIKLNIPIIGVVDTNHSP-DGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 149 ~P~~vii~~~~~--~~~ai~Ea~~l~IP~i~l~Dtn~~~-~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
-+|.+|+..... ....++++...|||+|.+ |+..+. ..+++.|-. |...+-+.....|.+
T Consensus 59 ~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~-~~~~~~~~~~~~~V~~--D~~~~g~~a~~~l~~ 121 (330)
T 3uug_A 59 GVKVLVIASIDGTTLSDVLKQAGEQGIKVIAY-DRLIRNSGDVSYYATF--DNFQVGVLQATSITD 121 (330)
T ss_dssp TCSEEEECCSSGGGGHHHHHHHHHTTCEEEEE-SSCCCSCTTCCEEEEE--CHHHHHHHHHHHHHH
T ss_pred CCCEEEEEcCCchhHHHHHHHHHHCCCCEEEE-CCCCCCCCceeEEEEe--CHHHHHHHHHHHHHH
Confidence 588888875542 345689999999999976 444322 234322222 445555555555554
No 194
>1j1e_C Troponin I, TNI; THIN filament, muscle regulation, Ca2+ binding protein, EF- hand, coiled-coil, contractIle protein; 3.30A {Homo sapiens} SCOP: h.1.25.2
Probab=21.40 E-value=5.5e+02 Score=24.63 Aligned_cols=37 Identities=11% Similarity=0.136 Sum_probs=26.5
Q ss_pred CCCHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 756 PLTKERREEI----VKLIKNITEETKISIRKIRRDSNENLK 792 (837)
Q Consensus 756 ~~T~E~R~~l----~k~~k~~~e~~k~~iR~iR~~~~~~~k 792 (837)
.||.+||..| .+.|....++-+..-..-|+.++..-.
T Consensus 10 ~mt~~Rk~~Lk~lll~kA~e~L~~E~e~k~eEKkkiLaER~ 50 (180)
T 1j1e_C 10 KISASRKLQLKTLLLQIAKQELEREAEERRGEKGRALSTRA 50 (180)
T ss_dssp SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 6999999875 455666666667777778887776533
No 195
>3c65_A Uvrabc system protein C; UVRC, endonuclease, nucleotide excision repair, DNA repair, RNAse H, cytoplasm, DNA damage, DNA excision; 1.90A {Bacillus stearothermophilus}
Probab=21.36 E-value=73 Score=31.99 Aligned_cols=46 Identities=26% Similarity=0.451 Sum_probs=27.1
Q ss_pred HhHHHHHHHHhhccccCCCCCCCEEEEecCCCcchHHHHHh--h--cCCCEEEEec
Q psy13351 129 FYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAI--K--LNIPIIGVVD 180 (837)
Q Consensus 129 ~~~~~~kl~~~~~g~~~~~~~P~~vii~~~~~~~~ai~Ea~--~--l~IP~i~l~D 180 (837)
+.|++.++.+. + ..+||+++|=.-.-.-.+..|+. . +.||++|++=
T Consensus 68 l~RR~~r~~~e--~----~~~PDLiliDGGkgQl~~a~~vl~~~lg~~i~v~glaK 117 (226)
T 3c65_A 68 VRRRYTRVLKE--G----LPLPDLIIIDGGKGHLSAVRDVLENELGLDVPLAGLAK 117 (226)
T ss_dssp HHHHHHHHHHH--T----CCCCSEEEESSCHHHHHHHHHHHHHTSCCCCCEEEC--
T ss_pred HHHHHhhhhcc--c----CCCCCEEEEeCCHHHHHHHHHHHHHhcCCCceEEEEEc
Confidence 45556555432 1 15999887654445555666655 3 4599999985
No 196
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=20.86 E-value=3e+02 Score=29.09 Aligned_cols=44 Identities=18% Similarity=0.210 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhccCCCeEEEEecchhhHHHHHHHHHHcCCCc
Q psy13351 39 LYMYEKAIRYIYQLGFSKGTLLFVGTKRQARGVIANEAVRAGMPF 83 (837)
Q Consensus 39 ~~~L~~a~~~i~~~~~~~~~iLfv~t~~~~~~~v~~~a~~~~~~~ 83 (837)
...|-+|+..+..- ..+-++++||..+.-...+++.+...|..+
T Consensus 209 ~~~ll~A~~~l~~~-~p~~~lvivG~g~~~~~~l~~~~~~~gl~~ 252 (374)
T 2xci_A 209 VEIILKAFKEIKKT-YSSLKLILVPRHIENAKIFEKKARDFGFKT 252 (374)
T ss_dssp HHHHHHHHHHHHTT-CTTCEEEEEESSGGGHHHHHHHHHHTTCCE
T ss_pred HHHHHHHHHHHHhh-CCCcEEEEECCCHHHHHHHHHHHHHCCCce
Confidence 34455565555432 124578889987765556677777777654
No 197
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=20.82 E-value=80 Score=31.85 Aligned_cols=60 Identities=10% Similarity=0.174 Sum_probs=40.2
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+.........+.++...+||+|.+ |+..+...+++.-+ |...+.+.....|.+
T Consensus 63 ~~vdgiIi~~~~~~~~~~~~~~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 122 (291)
T 3egc_A 63 RRVDGLILAPSEGEHDYLRTELPKTFPIVAV-NRELRIPGCGAVLS---ENVRGARTAVEYLIA 122 (291)
T ss_dssp TTCSEEEECCCSSCCHHHHHSSCTTSCEEEE-SSCCCCTTCEEEEE---CHHHHHHHHHHHHHH
T ss_pred CCCCEEEEeCCCCChHHHHHhhccCCCEEEE-ecccCCCCCCEEEE---CcHHHHHHHHHHHHH
Confidence 4789999887766778888898999999965 55554334555443 444555555555544
No 198
>2hzl_A Trap-T family sorbitol/mannitol transporter, periplasmic binding protein, SMOM; trap transporter, periplasmic subunit, ligand binding; 1.40A {Rhodobacter sphaeroides 2} PDB: 2hzk_A
Probab=20.81 E-value=3.9e+02 Score=28.17 Aligned_cols=64 Identities=6% Similarity=-0.114 Sum_probs=46.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC----CCCchhhHhHHHHHHHHHHHHHHH
Q psy13351 756 PLTKERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNK----ILSVDNEYRAQYDIQKLTDKFILE 822 (837)
Q Consensus 756 ~~T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~~~~~kk~~k~~----~~s~D~~~~~~~~iq~l~~~~~~~ 822 (837)
.+++|.|+.+...+++..+..+...+..-.++++.+++ .+ .+++|+...+.+..+.+.++|.++
T Consensus 256 ~L~~~~q~~l~~a~~~a~~~~~~~~~~~~~~~~~~l~~---~G~~v~~~~~~~~~~~~~~~~~v~~~~~~~ 323 (365)
T 2hzl_A 256 GLTPTYQSLLRTACHAADANMLQLYDWKNPTAIKSLVA---QGTQLRPFSPEILQACFEAANEVYAEMEAS 323 (365)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTCEEEECCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHH---CCCEEEeCCHHHHHHHHHHHHHHHHHHHcc
Confidence 47889999888888887777777766666666655543 33 246777888888888888888654
No 199
>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*
Probab=20.60 E-value=1e+02 Score=31.10 Aligned_cols=60 Identities=20% Similarity=0.155 Sum_probs=37.2
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCCCEEEEecCCCCCCcceEEccCCCcchhhhhhhhhhchh
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVDTNHSPDGINYVIPGNDDSAKSIALYTKGIVD 211 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~IP~i~l~Dtn~~~~~i~ypIP~N~~s~~si~~~~~~l~~ 211 (837)
+.+|.+|+..+..+...+.++...+||+|.+ |+..+...++|.-+ |...+.+.....|.+
T Consensus 71 ~~vdgiIi~~~~~~~~~~~~l~~~~iPvV~~-~~~~~~~~~~~V~~---D~~~~g~~a~~~L~~ 130 (289)
T 2fep_A 71 KQVDGIVFMGGNITDEHVAEFKRSPVPIVLA-ASVEEQEETPSVAI---DYEQAIYDAVKLLVD 130 (289)
T ss_dssp TTCSEEEECCSCCCHHHHHHHHHSSSCEEEE-SCCCTTCCSCEEEC---CHHHHHHHHHHHHHH
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCEEEE-ccccCCCCCCEEEE---CcHHHHHHHHHHHHH
Confidence 4688888876555556788888899999987 54433223444332 444555555555544
No 200
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=20.38 E-value=52 Score=39.85 Aligned_cols=29 Identities=21% Similarity=0.078 Sum_probs=26.2
Q ss_pred cCCChHHHHHHHHHhhccHHHHHHHHHHH
Q psy13351 226 TLAPIMECKKALIEANGKLSKAEEILRIK 254 (837)
Q Consensus 226 t~~~~~~~k~al~~~~~d~~~A~~~Lr~~ 254 (837)
-|.....+++||.+++||++.|++||-..
T Consensus 730 mGf~~~~a~~aL~~t~~~~eraidwlfs~ 758 (854)
T 3ihp_A 730 MGFSRDQALKALRATNNSLERAVDWIFSH 758 (854)
T ss_dssp TTCCHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHhhcCcHHHHHHhhhcC
Confidence 36778899999999999999999999775
No 201
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=20.25 E-value=3.1e+02 Score=27.41 Aligned_cols=63 Identities=13% Similarity=-0.023 Sum_probs=45.1
Q ss_pred CCCCEEEEecCCCcchHHHHHhhcCC--C----EEEEecCC----CCCCcceEEccC-CCcchhhhhhhhhhch
Q psy13351 148 IIPDAIFIIDVGYHKGAVSEAIKLNI--P----IIGVVDTN----HSPDGINYVIPG-NDDSAKSIALYTKGIV 210 (837)
Q Consensus 148 ~~P~~vii~~~~~~~~ai~Ea~~l~I--P----~i~l~Dtn----~~~~~i~ypIP~-N~~s~~si~~~~~~l~ 210 (837)
..|+.||+.|-..-.-+++.+...|+ | +||+=|+. ..|.+.++-.|. -.-...++.+++..+.
T Consensus 186 ~~~~ai~~~nd~~A~g~~~al~~~G~~vP~di~vig~D~~~~~~~~~p~lttv~~~~~~~~g~~av~~L~~~i~ 259 (294)
T 3qk7_A 186 VPPTAIITDCNMLGDGVASALDKAGLLGGEGISLIAYDGLPDDSLLDIAVTPIVQNTRTSVGKQIASMICDLLG 259 (294)
T ss_dssp SCCSEEEESSHHHHHHHHHHHHHTTCSSTTSCEEEEETCSCTTCSCCSCCEEEECCCHHHHHHHHHHHHHHHHT
T ss_pred CCCcEEEECCHHHHHHHHHHHHHcCCCCCCceEEEeecCccHHhhcCCCceeEecCcHHHHHHHHHHHHHHHhc
Confidence 57999998764333445566666654 3 88987776 467778888888 6778888888877664
No 202
>2qh8_A Uncharacterized protein; conserved domain protein, structural genomics, PSI-2, MCSG, BIG_563.1, protein structure initiative; HET: HIS; 2.20A {Vibrio cholerae o1 biovar eltor str} PDB: 3lkv_A*
Probab=20.01 E-value=1.3e+02 Score=30.73 Aligned_cols=91 Identities=11% Similarity=0.065 Sum_probs=53.5
Q ss_pred CCCEEEEecCCC---cchHH-HHHhhcCCCEEEEecCC-CCCCcceEEccCCCcchhhhhhhhhhchhhhhcccchhhhh
Q psy13351 149 IPDAIFIIDVGY---HKGAV-SEAIKLNIPIIGVVDTN-HSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKTVGELR 223 (837)
Q Consensus 149 ~P~~vii~~~~~---~~~ai-~Ea~~l~IP~i~l~Dtn-~~~~~i~ypIP~N~~s~~si~~~~~~l~~ai~~g~~v~~lr 223 (837)
.||.||+.+-.. -..++ ..+...+||++|+-|+. ..|.+.++-.|.-.-...+..+++.+| +|.....++
T Consensus 193 ~~dai~~~~D~~a~g~~~~l~~~~~~~~i~vig~d~~~~~~~~Lttv~~~~~~~G~~Aa~~l~~~l-----~g~~~~~ip 267 (302)
T 2qh8_A 193 KSDVIYALIDNTVASAIEGMIVAANQAKTPVFGAATSYVERGAIASLGFDYYQIGVQTADYVAAIL-----EGKEPGSLD 267 (302)
T ss_dssp GCSEEEECSCHHHHTTHHHHHHHHHHTTCCEEESSHHHHHTTCSEEEECCHHHHHHHHHHHHHHHH-----TTCCGGGSC
T ss_pred cCCEEEECCcHhHHHHHHHHHHHHHHcCCCEEECCHHHHhCCcEEEEeCCHHHHHHHHHHHHHHHH-----CcCCcccCC
Confidence 689988864211 11123 34556799999986654 347788888888777778877776655 455444444
Q ss_pred ccc--CCChHHHHHHHHHhhccH
Q psy13351 224 SKT--LAPIMECKKALIEANGKL 244 (837)
Q Consensus 224 ~~t--~~~~~~~k~al~~~~~d~ 244 (837)
-.+ ...+.-..+.++..+-++
T Consensus 268 v~~~~~~~~~in~~~a~~~gi~i 290 (302)
T 2qh8_A 268 VQVAKGSDLVINKTAAEQLGITI 290 (302)
T ss_dssp CEECCCCEEEECHHHHHHTTCCC
T ss_pred cccccccEEEEcHHHHHHcCCCC
Confidence 322 223333444455544443
No 203
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=20.00 E-value=2.2e+02 Score=24.64 Aligned_cols=33 Identities=9% Similarity=0.213 Sum_probs=26.2
Q ss_pred CCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13351 755 PPL-TKERREEIVKLIKNITEETKISIRKIRRDS 787 (837)
Q Consensus 755 P~~-T~E~R~~l~k~~k~~~e~~k~~iR~iR~~~ 787 (837)
|.. ..|.|+..++.+....++|..-|+...-++
T Consensus 39 ~~~~~~e~rk~~i~~ie~~ldEA~eLl~qMelE~ 72 (102)
T 2qyw_A 39 LGTAGTEEKKKLVRDFDEKQQEANETLAEMEEEL 72 (102)
T ss_dssp HTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444 458999999999999999999887765443
Done!