RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13351
(837 letters)
>d2gy9b1 c.23.15.1 (B:8-225) Ribosomal protein S2 {Escherichia coli
[TaxId: 562]}
Length = 218
Score = 216 bits (552), Expect = 7e-66
Identities = 104/218 (47%), Positives = 154/218 (70%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
ML+AGVHFGHQTR+WNPKM +IFG RNK+HIINLEKT+ M+ +A+ + ++ KG +L
Sbjct: 1 MLKAGVHFGHQTRYWNPKMKPFIFGARNKVHIINLEKTVPMFNEALAELNKIASRKGKIL 60
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTKR A + + A+ F++ RWLGG+LTN+KT++ SI+RLK+++ +G+ K
Sbjct: 61 FVGTKRAASEAVKDAALSCDQFFVNHRWLGGMLTNWKTVRQSIKRLKDLETQSQDGTFDK 120
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
L+KKEAL+ R+ KL +GGIK+M +PDA+F+ID + A+ EA L IP+ +VD
Sbjct: 121 LTKKEALMRTRELEKLENSLGGIKDMGGLPDALFVIDADHEHIAIKEANNLGIPVFAIVD 180
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAKT 218
TN PDG+++VIPGNDD+ +++ LY + + ++
Sbjct: 181 TNSDPDGVDFVIPGNDDAIRAVTLYLGAVAATVREGRS 218
>d2uubb1 c.23.15.1 (B:7-240) Ribosomal protein S2 {Thermus
thermophilus [TaxId: 274]}
Length = 234
Score = 213 bits (544), Expect = 2e-64
Identities = 99/217 (45%), Positives = 144/217 (66%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHRNKIHIINLEKTLYMYEKAIRYIYQLGFSKGTLL 60
+LEAGVHFGH+ + WNPK + YI+ RN IHII+L+KT+ E+ R+I L GT+L
Sbjct: 4 LLEAGVHFGHERKRWNPKFARYIYAERNGIHIIDLQKTMEELERTFRFIEDLAMRGGTIL 63
Query: 61 FVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIRK 120
FVGTK+QA+ ++ EA RAGMP+++QRWLGG+LTNFKTI + RL+E++ + I +
Sbjct: 64 FVGTKKQAQDIVRMEAERAGMPYVNQRWLGGMLTNFKTISQRVHRLEELEALFASPEIEE 123
Query: 121 LSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVVD 180
KKE + + +L + + G + + +PDAIF++D AV EA KL IP+I + D
Sbjct: 124 RPKKEQVRLKHELERLQKYLSGFRLLKRLPDAIFVVDPTKEAIAVREARKLFIPVIALAD 183
Query: 181 TNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
T+ PD ++Y+IPGNDD+ +SI L VD + A+
Sbjct: 184 TDSDPDLVDYIIPGNDDAIRSIQLILSRAVDLIIQAR 220
>d1wqga1 d.67.3.1 (A:2-184) Ribosome recycling factor, RRF
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 183
Score = 153 bits (387), Expect = 2e-43
Identities = 64/182 (35%), Positives = 111/182 (60%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
I + + ++KM + + +++L +RTGRAN GM I + Y+ T + ++A+I +
Sbjct: 1 IDEALFDAEEKMEKAVAVARDDLSTIRTGRANPGMFSRITIDYYGAATPITQLASINVPE 60
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
+ + I+P+E I+ AI ++LG+NPT G +I V++P LT+ERR E+VK K+
Sbjct: 61 ARLVVIKPYEANQLRAIETAIRNSDLGVNPTNDGALIRVAVPQLTEERRRELVKQAKHKG 120
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
EE K+S+R IRR + E L ++ K D RA+ D+ K T +++ +I++L+ +KE E
Sbjct: 121 EEAKVSVRNIRRKAMEELHRIRKEGEAGEDEVGRAEKDLDKTTHQYVTQIDELVKHKEGE 180
Query: 834 IL 835
+L
Sbjct: 181 LL 182
>d1eh1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermus
thermophilus [TaxId: 274]}
Length = 185
Score = 151 bits (382), Expect = 1e-42
Identities = 72/184 (39%), Positives = 126/184 (68%)
Query: 652 MIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITL 711
M + ++ T+ M ++++L+ NL +RTGRAN +L +++V+Y+ L +IA +T
Sbjct: 1 MTLKELYAETRSHMQKSLEVLEHNLAGLRTGRANPALLLHLKVEYYGAHVPLNQIATVTA 60
Query: 712 FNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKN 771
+ T+ +Q +++ I+KAI +++LGLNP+ +G+ +Y++IPPLT+ERR+++V+ ++
Sbjct: 61 PDPRTLVVQSWDQNALKAIEKAIRDSDLGLNPSNKGDALYINIPPLTEERRKDLVRAVRQ 120
Query: 772 ITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKE 831
EE +++IR IRR++ + LKKL K LS D RA+ +IQK+TD+FI + +QL KE
Sbjct: 121 YAEEGRVAIRNIRREALDKLKKLAKELHLSEDETKRAEAEIQKITDEFIAKADQLAEKKE 180
Query: 832 KEIL 835
+EIL
Sbjct: 181 QEIL 184
>d1is1a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Vibrio
parahaemolyticus [TaxId: 670]}
Length = 185
Score = 150 bits (380), Expect = 2e-42
Identities = 79/183 (43%), Positives = 132/183 (72%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
I++IKK+ +++M +++ LK NL KVRTGRA+ +L I V+Y+ T L ++AN+ +
Sbjct: 2 INEIKKDAQERMDKSVEALKNNLSKVRTGRAHPSLLSGISVEYYGAATPLNQVANVVAED 61
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
+ T++I F+KE++ ++KAI ++LGLNP G II V +PPLT+ERR+++VK+++
Sbjct: 62 ARTLAITVFDKELTQKVEKAIMMSDLGLNPMSAGTIIRVPLPPLTEERRKDLVKIVRGEA 121
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
E ++++R IRRD+N +LK LLK+K +S D + +AQ +IQKLTD + +I+++L KEKE
Sbjct: 122 EGGRVAVRNIRRDANNDLKALLKDKEISEDEDRKAQEEIQKLTDVAVKKIDEVLAAKEKE 181
Query: 834 ILT 836
++
Sbjct: 182 LME 184
>d1vi6a_ c.23.15.1 (A:) Ribosomal protein S2 {Archaeon Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 193
Score = 147 bits (372), Expect = 3e-41
Identities = 42/218 (19%), Positives = 85/218 (38%), Gaps = 51/218 (23%)
Query: 1 MLEAGVHFGHQTRFWNPKMSSYIFGHR-NKIHIINLEKTLYMYEKAIRYIYQLGFSKGTL 59
L AGVH G Q + + M +IF R + ++++++ K A +++ + + +
Sbjct: 11 YLAAGVHIGTQIKTGD--MKKFIFKVRQDGLYVLDIRKLDERIRVAAKFLSR--YEPSKI 66
Query: 60 LFVGTKRQARGVIANEAVRAGMPFIDQRWLGGLLTNFKTIKTSIQRLKEMDLFITNGSIR 119
L V ++ A + + G +I R++ G LTN
Sbjct: 67 LLVAARQYAHKPVQMFSKVVGSDYIVGRFIPGTLTNP----------------------- 103
Query: 120 KLSKKEALLFYRKQMKLNRVIGGIKNMNIIPDAIFIIDVGYHKGAVSEAIKLNIPIIGVV 179
+ + P+ +F+ D K AVSEA + IP++ +
Sbjct: 104 -----------------------MLSEYREPEVVFVNDPAIDKQAVSEATAVGIPVVALC 140
Query: 180 DTNHSPDGINYVIPGNDDSAKSIALYTKGIVDAFLDAK 217
D+N+S ++ VIP N+ +++A+ + +
Sbjct: 141 DSNNSSADVDLVIPTNNKGRRALAIVYWLLAREIAKIR 178
>d1ek8a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Escherichia
coli [TaxId: 562]}
Length = 185
Score = 145 bits (366), Expect = 1e-40
Identities = 74/183 (40%), Positives = 128/183 (69%)
Query: 653 IISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLF 712
+ISDI+K+ + +M ++ K + K+RTGRA+ +LD I V+Y+ T L ++A++T+
Sbjct: 1 MISDIRKDAEVRMDKCVEAFKTQISKIRTGRASPSLLDGIVVEYYGTPTPLRQLASVTVE 60
Query: 713 NSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNI 772
+S T+ I F++ MS ++KAI ++LGLNP G+ I V +PPLT+ERR+++ K+++
Sbjct: 61 DSRTLKINVFDRSMSPAVEKAIMASDLGLNPNSAGSDIRVPLPPLTEERRKDLTKIVRGE 120
Query: 773 TEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEK 832
E+ ++++R +RRD+N+ +K LLK+K +S D++ R+Q D+QKLTD I +I L +KE
Sbjct: 121 AEQARVAVRNVRRDANDKVKALLKDKEISEDDDRRSQDDVQKLTDAAIKKIEAALADKEA 180
Query: 833 EIL 835
E++
Sbjct: 181 ELM 183
>d1dd5a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Thermotoga
maritima [TaxId: 2336]}
Length = 184
Score = 142 bits (359), Expect = 1e-39
Identities = 68/182 (37%), Positives = 121/182 (66%)
Query: 654 ISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANITLFN 713
++ K K+KM T++ +++ L+K+RTG+ + +L+ I+V Y+ T + ++A I++
Sbjct: 1 VNPFIKEAKEKMKRTLEKIEDELRKMRTGKPSPAILEEIKVDYYGVPTPVNQLATISISE 60
Query: 714 SHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIKNIT 773
T+ I+P++K + S+I+KAIN ++LGLNP GN+I + P T E+RE+ VK K I
Sbjct: 61 ERTLVIKPWDKSVLSLIEKAINASDLGLNPINDGNVIRLVFPSPTTEQREKWVKKAKEIV 120
Query: 774 EETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINKEKE 833
EE KI+IR IRR+ + +K+ K ++ D+ R + +IQKLTD+FI +++++ K++E
Sbjct: 121 EEGKIAIRNIRREILKKIKEDQKEGLIPEDDAKRLENEIQKLTDEFIEKLDEVFEIKKEE 180
Query: 834 IL 835
I+
Sbjct: 181 IM 182
>d1ge9a_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Aquifex
aeolicus [TaxId: 63363]}
Length = 184
Score = 138 bits (348), Expect = 5e-38
Identities = 71/186 (38%), Positives = 121/186 (65%), Gaps = 4/186 (2%)
Query: 651 IMIISDIKKNTKQKMLNTIKILKENLKKVRTGRANIGMLDNIQVKYHEHLTKLLKIANIT 710
I + DI K ++ M ++ K + +RT RA+ +++ I+V+Y+ + ++ I+
Sbjct: 2 IKELEDIFKEAEKDMKKAVEYYKNEIAGLRTSRASTALVEEIKVEYYGSKVPIKQLGTIS 61
Query: 711 LFNSHTISIQPFEKEMSSIIKKAINEANLGLNPTIQGNIIYVSIPPLTKERREEIVKLIK 770
+ + I IQ +++ I+KAI E L LNPT+QGN+I V++PPLT+ERR E+V+L+
Sbjct: 62 VPEHNQIVIQVWDQNAVPAIEKAIRE-ELNLNPTVQGNVIRVTLPPLTEERRRELVRLLH 120
Query: 771 NITEETKISIRKIRRDSNENLKKLLKNKILSVDNEYRAQYDIQKLTDKFILEINQLLINK 830
ITEE ++ +R +RR++ E +++L + +S D + RA +QKLTDK+I EIN+L+ K
Sbjct: 121 KITEEARVRVRNVRREAKEMIEEL---EGISEDEKKRALERLQKLTDKYIDEINKLMEAK 177
Query: 831 EKEILT 836
EKEI++
Sbjct: 178 EKEIMS 183
>d2a1fa1 c.73.1.3 (A:2-237) Uridylate kinase PyrH {Haemophilus
influenzae [TaxId: 727]}
Length = 236
Score = 132 bits (332), Expect = 2e-35
Identities = 102/222 (45%), Positives = 152/222 (68%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL D I+ +I+ + EI E+V G+E+++V+GGGN+ RG ++R D
Sbjct: 14 GEALQGEDGLGIDPAILDRMAVEIKELVEMGVEVSVVLGGGNLFRGAKLAKAGMNRVVGD 73
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
+MGMLAT++N LA+ D L ++ + + +MSA + ++Y AIK L E +VVIF+ G
Sbjct: 74 HMGMLATVMNGLAMRDSLFRADVNAKLMSAFQLNGICDTYNWSEAIKMLREKRVVIFSAG 133
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTD+TA LR EI+A+++LKATKVDG+Y+ DP K A +YK +++ EVI K+L
Sbjct: 134 TGNPFFTTDSTACLRGIEIEADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKEL 193
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
++MD +AF+ RD +PIRVF++ K GAL++V+ G EGT +
Sbjct: 194 KVMDLSAFTLARDHGMPIRVFNMGKPGALRQVVTGTEEGTTI 235
>d1ybda1 c.73.1.3 (A:6-241) Uridylate kinase PyrH {Neisseria
meningitidis [TaxId: 487]}
Length = 236
Score = 128 bits (321), Expect = 5e-34
Identities = 123/223 (55%), Positives = 166/223 (74%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GE+LM D + IN I + EI+E+V G+++ IV+GGGNI RG+S + ++DR+TAD
Sbjct: 13 GESLMGSDPFGINHDTIVQTVGEIAEVVKMGVQVGIVVGGGNIFRGVSAQAGSMDRATAD 72
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
YMGM+AT++N+LAL D GI + V SA+S+++ E+Y AI+YLEEGKVVIFA G
Sbjct: 73 YMGMMATVMNALALKDAFETLGIKARVQSALSMQQIAETYARPKAIQYLEEGKVVIFAAG 132
Query: 545 IGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKKL 604
GNPFFTTDT AALR AE+ +++LKAT VDG+Y +DP K SA Y+ ITFDE + K L
Sbjct: 133 TGNPFFTTDTAAALRGAEMNCDVMLKATNVDGVYTADPKKDPSATRYETITFDEALLKNL 192
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647
++MD+TAF+ CR++KL I VF I K G+LKRVI G++EGTLV+
Sbjct: 193 KVMDATAFALCRERKLNIVVFGIAKEGSLKRVITGEDEGTLVH 235
>d1z9da1 c.73.1.3 (A:4-241) Uridylate kinase PyrH {Streptococcus
pyogenes [TaxId: 1314]}
Length = 238
Score = 121 bits (304), Expect = 1e-31
Identities = 84/223 (37%), Positives = 138/223 (61%), Gaps = 1/223 (0%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTAD 484
GEAL I+ ++ I EI+E+ G+++A+VIGGGN+ RG +DR AD
Sbjct: 13 GEALAGEKGVGIDIPTVQAIAKEIAEVHVSGVQIALVIGGGNLWRGEPAADAGMDRVQAD 72
Query: 485 YMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGG 544
Y GML T++N+L + D L G+ + V +AI ++ E YI A+++LE+ ++V+F G
Sbjct: 73 YTGMLGTVMNALVMADSLQHYGVDTRVQTAIPMQNVAEPYIRGRALRHLEKNRIVVFGAG 132
Query: 545 IGNPFFTTD-TTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISKK 603
IG+P+F+TD T A A I++ VDG+YN+DP K +A+ + ++T EVI +
Sbjct: 133 IGSPYFSTDTTAALRAAEIEADAILMAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRG 192
Query: 604 LEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
L+IMD+TA + D + + VF++ ++G ++RV+ G++ GT V
Sbjct: 193 LKIMDATASTLSMDNDIDLVVFNMNEAGNIQRVVFGEHIGTTV 235
>d2ij9a1 c.73.1.3 (A:1-219) Uridylate kinase PyrH {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 219
Score = 109 bits (273), Expect = 1e-27
Identities = 52/233 (22%), Positives = 96/233 (41%), Gaps = 34/233 (14%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGISN--KIQNIDRST 482
G L S I+ I + ++ +V+GGG + R + +
Sbjct: 9 GSVLSN------ESEKIREFAKTIESVAQQN-QVFVVVGGGKLAREYIKSARELGASETF 61
Query: 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 542
DY+G+ AT +N++ L + + V + A + + +VV+
Sbjct: 62 CDYIGIAATRLNAMLLISAIPSAAKKVPVD-------------FMEAEELSKLYRVVVMG 108
Query: 543 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVISK 602
G P TTD TAAL A IKA++ + AT VDG+Y++DP SA+ Y +++ +++
Sbjct: 109 GT--FPGHTTDATAALLAEFIKADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEI 166
Query: 603 KLE---------IMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
++D A K+ V + + ++G+ GT++
Sbjct: 167 VSRSSAKAGTNVVIDLLAAKIIERSKIKTYVIL-GTPENIMKAVKGEAVGTVI 218
>d1xb2b2 d.43.1.1 (B:112-222) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 111
Score = 91.2 bits (226), Expect = 1e-22
Identities = 26/107 (24%), Positives = 48/107 (44%), Gaps = 14/107 (13%)
Query: 265 RNAKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNL 324
R K+G+I + LVE+NCETDFV++N +F + +++A + DQL+
Sbjct: 2 RKTKEGLIGLLQEGDTTVLVEVNCETDFVSRNLKFQQLVQQVALGTLLHCQNLKDQLSTY 61
Query: 325 K--------------IKNNLLTVDEKCKELISRIGENIKIRRFKLFK 357
++ ++ I ++GEN+ ++R K
Sbjct: 62 SKGFLNSSELSELPAGPEREGSLKDQLALAIGKLGENMILKRAAWVK 108
>d1efub4 d.43.1.1 (B:55-139) Elongation factor Ts (EF-Ts),
dimerisation domain {Escherichia coli [TaxId: 562]}
Length = 85
Score = 88.0 bits (218), Expect = 9e-22
Identities = 30/90 (33%), Positives = 45/90 (50%), Gaps = 8/90 (8%)
Query: 267 AKDGVIAIYISEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQLNNLKI 326
A DGVI I G ++E+NC+TDFVAK+ F F+ K+ +++ L
Sbjct: 2 AADGVIKTKIDGNYGIILEVNCQTDFVAKDAGFQAFADKVLDAAVAGKITDVEVLKA--- 58
Query: 327 KNNLLTVDEKCKELISRIGENIKIRRFKLF 356
+E+ L+++IGENI IRR
Sbjct: 59 -----QFEEERVALVAKIGENINIRRVAAL 83
>d1wiha_ d.67.3.1 (A:) Ribosome recycling factor, RRF {Mouse (Mus
musculus), mitochondrial [TaxId: 10090]}
Length = 84
Score = 81.0 bits (200), Expect = 2e-19
Identities = 23/83 (27%), Positives = 39/83 (46%), Gaps = 1/83 (1%)
Query: 682 GRANIGMLDNIQVKYHEHLTKLLKIANITLFNSHTISIQPFE-KEMSSIIKKAINEANLG 740
G + LD+I V + L +I I++ + I + E ++ KAI E+ +
Sbjct: 1 GSSGSSGLDHITVVTADGKVALNQIGQISMKSPQVILVNMASFPECTAAAIKAIRESGMN 60
Query: 741 LNPTIQGNIIYVSIPPLTKERRE 763
LNP ++G +I V IP +T
Sbjct: 61 LNPEVEGTLIRVPIPKVTSGPSS 83
>d2brxa1 c.73.1.3 (A:1-225) Uridylate kinase PyrH {Pyrococcus
furiosus [TaxId: 2261]}
Length = 225
Score = 83.9 bits (206), Expect = 8e-19
Identities = 56/234 (23%), Positives = 97/234 (41%), Gaps = 29/234 (12%)
Query: 425 GEALMKGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGGNICRGIS--NKIQNIDRST 482
G L+ N + IK I +++++ E+A+V+GGG + R + N +
Sbjct: 9 GSVLVPE---NPDIDFIKEIAYQLTKVSE-DHEVAVVVGGGKLARKYIEVAEKFNSSETF 64
Query: 483 ADYMGMLATIINSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFA 542
D++G+ T N++ L L + V K ++ I
Sbjct: 65 KDFIGIQITRANAMLLIAALREKAYPVVVEDFWEAWKAVQLK--------------KIPV 110
Query: 543 GGIGNPFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVIS- 601
G +P TTD AAL A +KA++++ T VDG+Y +DP K +A KK+ +E++
Sbjct: 111 MGGTHPGHTTDAVAALLAEFLKADLLVVITNVDGVYTADPKKDPTAKKIKKMKPEELLEI 170
Query: 602 --------KKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLVY 647
++D A + V + L RVI+G + GT +
Sbjct: 171 VGKGIEKAGSSSVIDPLAAKIIARSGIKTIVIGKEDAKDLFRVIKGDHNGTTIE 224
>d2cdqa1 c.73.1.3 (A:25-328) Aspartokinase {Thale cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 304
Score = 70.6 bits (172), Expect = 1e-13
Identities = 33/227 (14%), Positives = 74/227 (32%), Gaps = 29/227 (12%)
Query: 440 IIKNIISEISEIVSCGIELAIVIGGGNICRGISNKIQNIDRSTADYMGMLATI------- 492
+K + + S I++ EL ++ G + + ++ + ++ S + +
Sbjct: 80 TVKELNIDPSVILTYLEELEQLLKGIAMMKELTLRTRDYLVSFGECLSTRIFAAYLNTIG 139
Query: 493 INSLALFDILNKSGIISHVMSAISIEKFLESYIPLNAIKYLEEGKVVIFAGGIGN----- 547
+ + + +E + ++ + V I G +G
Sbjct: 140 VKARQYDAFEIGFITTDDFTNGDILEATYPAVAKRLYDDWMHDPAVPIVTGFLGKGWKTG 199
Query: 548 -----PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI-- 600
+D TA + + I VDG+ DP A +TFDE
Sbjct: 200 AVTTLGRGGSDLTATTIGKALGLKEIQVWKDVDGVLTCDPTIYKRATPVPYLTFDEAAEL 259
Query: 601 -SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
+++ + R+ ++P+RV + K GT++
Sbjct: 260 AYFGAQVLHPQSMRPAREGEIPVRVKNS---------YNPKAPGTII 297
>d1efub2 d.43.1.1 (B:140-282) Elongation factor Ts (EF-Ts),
dimerisation domain {Escherichia coli [TaxId: 562]}
Length = 143
Score = 63.4 bits (154), Expect = 2e-12
Identities = 24/60 (40%), Positives = 37/60 (61%)
Query: 364 SYLHDNKIGVIVEYNGDNESAVKDVAMHIAAMKPIALSSDQIPKKIIEKEYSLAVLKAQQ 423
SY H +IGV+V G +E VK +AMH+AA KP + + + +++EKEY + + A Q
Sbjct: 5 SYQHGARIGVLVAAKGADEELVKHIAMHVAASKPEFIKPEDVSAEVVEKEYQVQLDIAMQ 64
>d1xb2b1 a.5.2.2 (B:56-111) Elongation factor Ts (EF-Ts), N-terminal
domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]}
Length = 56
Score = 56.5 bits (137), Expect = 4e-11
Identities = 16/51 (31%), Positives = 25/51 (49%)
Query: 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 265
+ + +LR KT + CKKAL G L +AE L + K+ + + R
Sbjct: 4 SKELLMKLRRKTGYSFINCKKALETCGGDLKQAESWLHKQAQKEGWSKAAR 54
>d1aipc1 a.5.2.2 (C:2-53) Elongation factor Ts (EF-Ts), N-terminal
domain {Thermus thermophilus [TaxId: 274]}
Length = 52
Score = 56.5 bits (137), Expect = 4e-11
Identities = 15/51 (29%), Positives = 27/51 (52%)
Query: 215 DAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKKILNISNR 265
+ + +LR T A +M+ K+AL +A KA ++LR + K ++R
Sbjct: 2 QMELIKKLREATGAGMMDVKRALEDAGWDEEKAVQLLRERGAMKAAKKADR 52
>d1efub3 a.5.2.2 (B:1-54) Elongation factor Ts (EF-Ts), N-terminal
domain {Escherichia coli [TaxId: 562]}
Length = 54
Score = 56.5 bits (137), Expect = 5e-11
Identities = 22/47 (46%), Positives = 28/47 (59%)
Query: 212 AFLDAKTVGELRSKTLAPIMECKKALIEANGKLSKAEEILRIKLGKK 258
A + A V ELR +T A +M+CKKAL EANG + A E +R K
Sbjct: 1 AEITASLVKELRERTGAGMMDCKKALTEANGDIELAIENMRKSGAIK 47
>d2hmfa1 c.73.1.3 (A:2-303) Aspartokinase {Methanococcus jannaschii
[TaxId: 2190]}
Length = 302
Score = 61.0 bits (147), Expect = 1e-10
Identities = 30/129 (23%), Positives = 55/129 (42%), Gaps = 21/129 (16%)
Query: 530 IKYLEEGKVVIFAGGIGN---------PFFTTDTTAALRAAEIKAEIILKATKVDGIYNS 580
+ L+EG + + G IG +D +AAL + A+II T V G+Y +
Sbjct: 178 LPLLKEGIIPVVTGFIGTTEEGYITTLGRGGSDYSAALIGYGLDADIIEIWTDVSGVYTT 237
Query: 581 DPNKCLSAIIYKKITFDEVI---SKKLEIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVI 637
DP +A K+++ E + +++ ++ +PI V +
Sbjct: 238 DPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIPILVKNT---------F 288
Query: 638 EGKNEGTLV 646
E ++EGTL+
Sbjct: 289 EPESEGTLI 297
>d2j0wa1 c.73.1.3 (A:3-294) Aspartokinase {Escherichia coli [TaxId:
562]}
Length = 292
Score = 58.3 bits (140), Expect = 1e-09
Identities = 25/102 (24%), Positives = 39/102 (38%), Gaps = 12/102 (11%)
Query: 548 PFFTTDTTAALRAAEIKAEIILKATKVDGIYNSDPNKCLSAIIYKKITFDEVI---SKKL 604
+D TAAL A + A + T V GIY +DP +A +I F E +
Sbjct: 195 GRGGSDYTAALLAEALHASRVDIWTDVPGIYTTDPRVVSAAKRIDEIAFAEAAEMATFGA 254
Query: 605 EIMDSTAFSFCRDQKLPIRVFSIIKSGALKRVIEGKNEGTLV 646
+++ +P+ V S + + GTLV
Sbjct: 255 KVLHPATLLPAVRSDIPVFVGSS---------KDPRAGGTLV 287
>d1tfea_ d.43.1.1 (A:) Elongation factor Ts (EF-Ts), dimerisation
domain {Thermus thermophilus [TaxId: 274]}
Length = 142
Score = 50.1 bits (119), Expect = 7e-08
Identities = 39/139 (28%), Positives = 62/139 (44%), Gaps = 48/139 (34%)
Query: 267 AKDGVIAIYI--SEKVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTP-------IN 317
A++G+I YI +++VG LVE+NCETDFVA+N F +K +A I P I
Sbjct: 1 AREGIIGHYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIP 60
Query: 318 LDQLNNLK---------------------------------------IKNNLLTVDEKCK 338
++L + +K++ + V E +
Sbjct: 61 AEELEKERQIYIQAALNEGKPQQIAEKIAEGRLKKYLEEVVLLEQPFVKDDKVKVKELIQ 120
Query: 339 ELISRIGENIKIRRFKLFK 357
+ I++IGENI +RRF F+
Sbjct: 121 QAIAKIGENIVVRRFCRFE 139
Score = 41.2 bits (96), Expect = 9e-05
Identities = 24/74 (32%), Positives = 41/74 (55%), Gaps = 10/74 (13%)
Query: 364 SYLH-DNKIGVIVEYNGDNESA---------VKDVAMHIAAMKPIALSSDQIPKKIIEKE 413
Y+H + ++GV+VE N + + KD+AMHIA M P +S+++IP + +EKE
Sbjct: 8 HYIHHNQRVGVLVELNCETDFVARNELFQNLAKDLAMHIAMMNPRYVSAEEIPAEELEKE 67
Query: 414 YSLAVLKAQQLGEA 427
+ + A G+
Sbjct: 68 RQIYIQAALNEGKP 81
>d1xb2b3 d.43.1.1 (B:223-331) Elongation factor Ts (EF-Ts),
dimerisation domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 109
Score = 42.9 bits (101), Expect = 9e-06
Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 18/70 (25%)
Query: 364 SYLHDN------------KIGVIVEYNGDNESA-----VKDVAMHIAAMKPIALSSDQIP 406
SY+H K G +V A + + H+ M P+++ S
Sbjct: 6 SYVHGAMHSPSLHNLVLGKYGALVICETSELKANLADLGRRLGQHVVGMAPLSVGSLDDE 65
Query: 407 KKIIEKEYSL 416
E E +
Sbjct: 66 PG-GEAETKM 74
Score = 26.8 bits (59), Expect = 5.4
Identities = 9/92 (9%), Positives = 28/92 (30%), Gaps = 23/92 (25%)
Query: 279 KVGSLVEINCETDFVAKNNEFIKFSKKIAKLITENTPINLDQ-------------LNNLK 325
K G+LV +++ + + P+++ L+
Sbjct: 24 KYGALVICETS----ELKANLADLGRRLGQHVVGMAPLSVGSLDDEPGGEAETKMLSQPY 79
Query: 326 IKNNLLTVDEKCKELISRIGENIKIRRFKLFK 357
+ + +T+ + + + + F F+
Sbjct: 80 LLDPSITLGQYVQP------HGVSVVDFVRFE 105
>d1j1ja_ a.118.16.1 (A:) Translin {Human (Homo sapiens) [TaxId:
9606]}
Length = 217
Score = 30.2 bits (68), Expect = 0.75
Identities = 6/47 (12%), Positives = 21/47 (44%)
Query: 760 ERREEIVKLIKNITEETKISIRKIRRDSNENLKKLLKNKILSVDNEY 806
+ REEI K+++++ + + + ++ + + + L +
Sbjct: 19 DIREEIRKVVQSLEQTAREILTLLQGVHQGAGFQDIPKRCLKAREHF 65
>d1st9a_ c.47.1.10 (A:) Thiol-disulfide oxidoreductase ResA
{Bacillus subtilis [TaxId: 1423]}
Length = 137
Score = 28.7 bits (62), Expect = 1.7
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 746 QGNIIYVSIPPLTKERREEIVKLIK 770
+G ++ V +T+ + + LIK
Sbjct: 112 EGKVVKVVTGTMTESMIHDYMNLIK 136
>d2nlya1 c.6.2.7 (A:31-254) Hypothetical protein BH1492 {Bacillus
halodurans [TaxId: 86665]}
Length = 224
Score = 29.1 bits (65), Expect = 1.7
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
Query: 152 AIFIIDVGYHKGAVSEAIKLNIPIIGVVD--TNHSPD 186
AI I D G V + + IP+ V HS
Sbjct: 5 AIIIDDFGGDVKGVDDFLTGEIPVTVAVMPFLEHSTK 41
Score = 27.2 bits (60), Expect = 6.9
Identities = 14/62 (22%), Positives = 22/62 (35%)
Query: 398 IALSSDQIPKKIIEKEYSLAVLKAQQLGEALMKGDAYNINSSIIKNIISEISEIVSCGIE 457
I L + +K + K KA+Q E + G I S + E + I+
Sbjct: 156 IFLDNTHSSRKEVIKNMRKLAKKAKQGSEPIGIGHVGVRGDETYAGIRSMLDEFQAESIQ 215
Query: 458 LA 459
L
Sbjct: 216 LV 217
>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter
jejuni [TaxId: 197]}
Length = 317
Score = 28.5 bits (62), Expect = 3.3
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 767 KLIKNITEETKISIRKIRRDSNENLKKLLKNK 798
++IK E+T I + + ++E +K+L
Sbjct: 16 EIIKKFEEKTGIKVNHTQAKASELIKRLSLEG 47
>d2gqba1 a.282.1.1 (A:1-130) Hypothetical protein RPA2825
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 130
Score = 27.1 bits (60), Expect = 5.2
Identities = 11/47 (23%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 364 SYLHDNKIGVIVEYNGD-NESAVKDVAMHIAAMKPIALSSDQIPKKI 409
S ++ + Y+GD N+SA ++ +H M + + ++P +I
Sbjct: 82 SLSARKELAKELGYSGDMNDSASMNIWLHKQVMSKLVANGGKLPPEI 128
>d2ap9a1 c.73.1.2 (A:6-296) N-acetyl-l-glutamate kinase
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 291
Score = 27.9 bits (61), Expect = 5.6
Identities = 21/117 (17%), Positives = 40/117 (34%), Gaps = 20/117 (17%)
Query: 419 LKAQQLGEALMKGDAYN-------------INSSIIKNIISEISEIVSCGIELAIVIGGG 465
+KAQ L EAL + + ++ + ++++ + +CGI +V GGG
Sbjct: 8 IKAQVLAEALPWLKQLHGKVVVVKYGGNAMTDDTLRRAFAADMAFLRNCGIHPVVVHGGG 67
Query: 466 ------NICRGISNKIQNIDRSTADYMGMLATIINSLALFDILNKSGIISHVMSAIS 516
GI + R T + + + I +H A+
Sbjct: 68 PQITAMLRRLGIEGDFKGGFRVT-TPEVLDVARMVLFGQVGRELVNLINAHGPYAVG 123
>d1b7ba_ c.73.1.1 (A:) Carbamate kinase {Enterococcus faecium
[TaxId: 1352]}
Length = 307
Score = 27.6 bits (60), Expect = 6.0
Identities = 6/42 (14%), Positives = 16/42 (38%), Gaps = 1/42 (2%)
Query: 425 GEALM-KGDAYNINSSIIKNIISEISEIVSCGIELAIVIGGG 465
G A++ + + + + + ++ G L + G G
Sbjct: 10 GNAILSNDASAHAQQQALVQTSAYLVHLIKQGHRLIVSHGNG 51
>d1bjta_ e.11.1.1 (A:) DNA topoisomerase II, C-terminal fragment
(residues 410-1202) {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 760
Score = 27.5 bits (60), Expect = 8.6
Identities = 14/56 (25%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 757 LTKERREEIVKLIKNITEE----TKISIRKIRRDSNENLKKLLKNKILSVDNEYRA 808
LTKER ++++K + E K+S + I + + + + L D E R
Sbjct: 706 LTKERYQKLLKQKQEKETELENLLKLSAKDIWNTDLKAFEVGYQ-EFLQRDAEARG 760
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.374
Gapped
Lambda K H
0.267 0.0527 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,063,279
Number of extensions: 154580
Number of successful extensions: 613
Number of sequences better than 10.0: 1
Number of HSP's gapped: 591
Number of HSP's successfully gapped: 65
Length of query: 837
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 744
Effective length of database: 1,130,706
Effective search space: 841245264
Effective search space used: 841245264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.2 bits)