BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13352
(451 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3HXU|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Alasa
pdb|3HXV|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Glysa
pdb|3HXW|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Sersa
pdb|3HXX|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp
pdb|3HXY|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
In Complex With Amppcp, Ala-Amp And Pcp
Length = 441
Score = 500 bits (1288), Expect = e-142, Method: Compositional matrix adjust.
Identities = 244/444 (54%), Positives = 301/444 (67%), Gaps = 9/444 (2%)
Query: 3 SIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATS 62
+ EI FL FF SKGH +V SSSL+P ND +LLFTN+GM QFKDVFLG++KRNY RAT+
Sbjct: 4 TAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATT 63
Query: 63 IQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLT--QIYGLS 120
QRC+RAGGKHNDLENVGYT HHTFF+MLGN+SFGDYFK +++ + W LLT + + L
Sbjct: 64 SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALP 123
Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
ERLW+TVY +DDE Y IW ++G+P+ER+IRIGD K +P Y SDNFWQM DTGPCGPC+
Sbjct: 124 KERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAP-YASDNFWQMGDTGPCGPCT 182
Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
EIFYD G G PPGS E G+RYIEIWN VFMQFN++ + + LPK VDTG
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADG-----TMEPLPKPSVDTG 237
Query: 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDG 300
MGLER+A++LQ+V +NY+ DLF+TLI+A A+ T +L N SL+VIADHIR+C FLI DG
Sbjct: 238 MGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADG 297
Query: 301 VFPGNEGRGYVLXXXXXXXXXYGYKLGQNSIFLYKLVKDLIFNTYIIYXXXXXXXXXXXX 360
V P NE RGYVL +G LG F YKLV LI
Sbjct: 298 VMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQ 357
Query: 361 XXXXXXXCFRKTLKYGIKIL-ENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNV 419
F +TL+ G+ +L E + D LDG+ AF LYDTYGFP+DLT D+C+E N+
Sbjct: 358 VLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNI 417
Query: 420 SFNKNDFILEMEKQRNNARLNSKF 443
++ F ME+QR AR S F
Sbjct: 418 KVDEAGFEAAMEEQRRRAREASGF 441
>pdb|3HXZ|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|C Chain C, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HXZ|D Chain D, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Alasa
pdb|3HY0|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY0|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Glysa
pdb|3HY1|A Chain A, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
pdb|3HY1|B Chain B, Crystal Structure Of Catalytic Fragment Of E. Coli Alars
G237a In Complex With Sersa
Length = 441
Score = 498 bits (1283), Expect = e-141, Method: Compositional matrix adjust.
Identities = 243/444 (54%), Positives = 300/444 (67%), Gaps = 9/444 (2%)
Query: 3 SIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATS 62
+ EI FL FF SKGH +V SSSL+P ND +LLFTN+GM QFKDVFLG++KRNY RAT+
Sbjct: 4 TAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATT 63
Query: 63 IQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLT--QIYGLS 120
QRC+RAGGKHNDLENVGYT HHTFF+MLGN+SFGDYFK +++ + W LLT + + L
Sbjct: 64 SQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALP 123
Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
ERLW+TVY +DDE Y IW ++G+P+ER+IRIGD K +P Y SDNFWQM DTGPCGPC+
Sbjct: 124 KERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAP-YASDNFWQMGDTGPCGPCT 182
Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
EIFYD G G PPGS E G+RYIEIWN VFMQFN++ + + LPK VDT
Sbjct: 183 EIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQADG-----TMEPLPKPSVDTA 237
Query: 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDG 300
MGLER+A++LQ+V +NY+ DLF+TLI+A A+ T +L N SL+VIADHIR+C FLI DG
Sbjct: 238 MGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADG 297
Query: 301 VFPGNEGRGYVLXXXXXXXXXYGYKLGQNSIFLYKLVKDLIFNTYIIYXXXXXXXXXXXX 360
V P NE RGYVL +G LG F YKLV LI
Sbjct: 298 VMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQ 357
Query: 361 XXXXXXXCFRKTLKYGIKIL-ENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNV 419
F +TL+ G+ +L E + D LDG+ AF LYDTYGFP+DLT D+C+E N+
Sbjct: 358 VLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRERNI 417
Query: 420 SFNKNDFILEMEKQRNNARLNSKF 443
++ F ME+QR AR S F
Sbjct: 418 KVDEAGFEAAMEEQRRRAREASGF 441
>pdb|3HTZ|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine: Re-Refined
Length = 464
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/459 (44%), Positives = 279/459 (60%), Gaps = 30/459 (6%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
+ + EI FLSFF+ KGHT V S+ L+P+ND +LLF N+GMV FK+VFLG+EKR Y RA
Sbjct: 2 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRA 61
Query: 61 TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
TS Q+CLR GKHNDLE VGYT+ HHTFF+MLGN+SFGDYFK E++++ WE +T++ L
Sbjct: 62 TSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLP 121
Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
E+L+++VY D+E Y IW IG+P ER+ R+G++ DNFWQM D GPCGP S
Sbjct: 122 KEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE--------DNFWQMGDVGPCGPSS 173
Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
EI+ D G + G+ RY+EIWN VFMQ+N++ N LT LP +DTG
Sbjct: 174 EIYVDRGEEYEGD---------ERYLEIWNLVFMQYNRDENG-----VLTPLPHPNIDTG 219
Query: 241 MGLERLASILQNVYNNYETDLFKTLIK----AAARETNCNNLKNNSLKVIADHIRACVFL 296
MGLER+AS+LQ +N+E D+ LI+ + ++ + +L+VIADH+RA F
Sbjct: 220 MGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFA 279
Query: 297 IIDGVFPGNEGRGYVLXXXXXXXXXYGYKLGQNSIFLYKLVKDLIFNTYIIYXXXXXXXX 356
I DGV P NEGRGYV+ +GYKLG + FLYK V ++ Y
Sbjct: 280 ISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSRE 339
Query: 357 XXXXXXXXXXXCFRKTLKYGIKILENILLTKPDK----LDGKLAFILYDTYGFPIDLTID 412
F KTLK G++ ++ ++ ++ L GK F YDTYGFP+DL +
Sbjct: 340 FVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDE 399
Query: 413 ICKEHNVSFNKNDFILEMEKQRNNARLNSKFKDIKLNII 451
I +E + + F E+E+QR AR + K + K+ +
Sbjct: 400 IAREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPV 438
>pdb|1YFR|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFR|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With Atp And Magnesium
pdb|1YFS|A Chain A, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFS|B Chain B, The Crystal Structure Of Alanyl-Trna Synthetase In Complex
With L-Alanine
pdb|1YFT|A Chain A, The Crystal Structure Of The Catalytic Fragment Of Alanyl-
Trna Synthetase In Complex Wtih Glycine
pdb|1YGB|A Chain A, Crystal Structure Of The Catalytic Fragment Of Alanyl-Trna
Synthetase In Complex With L-Serine
Length = 465
Score = 390 bits (1001), Expect = e-108, Method: Compositional matrix adjust.
Identities = 203/459 (44%), Positives = 279/459 (60%), Gaps = 30/459 (6%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
+ + EI FLSFF+ KGHT V S+ L+P+ND +LLF N+GMV FK+VFLG+EKR Y RA
Sbjct: 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRA 62
Query: 61 TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
TS Q+CLR GKHNDLE VGYT+ HHTFF+MLGN+SFGDYFK E++++ WE +T++ L
Sbjct: 63 TSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLP 122
Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
E+L+++VY D+E Y IW IG+P ER+ R+G++ DNFWQM D GPCGP S
Sbjct: 123 KEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE--------DNFWQMGDVGPCGPSS 174
Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
EI+ D G + G+ RY+EIWN VFMQ+N++ N LT LP +DTG
Sbjct: 175 EIYVDRGEEYEGD---------ERYLEIWNLVFMQYNRDENG-----VLTPLPHPNIDTG 220
Query: 241 MGLERLASILQNVYNNYETDLFKTLIK----AAARETNCNNLKNNSLKVIADHIRACVFL 296
MGLER+AS+LQ +N+E D+ LI+ + ++ + +L+VIADH+RA F
Sbjct: 221 MGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFA 280
Query: 297 IIDGVFPGNEGRGYVLXXXXXXXXXYGYKLGQNSIFLYKLVKDLIFNTYIIYXXXXXXXX 356
I DGV P NEGRGYV+ +GYKLG + FLYK V ++ Y
Sbjct: 281 ISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSRE 340
Query: 357 XXXXXXXXXXXCFRKTLKYGIKILENILLTKPDK----LDGKLAFILYDTYGFPIDLTID 412
F KTLK G++ ++ ++ ++ L GK F YDTYGFP+DL +
Sbjct: 341 FVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDE 400
Query: 413 ICKEHNVSFNKNDFILEMEKQRNNARLNSKFKDIKLNII 451
I +E + + F E+E+QR AR + K + K+ +
Sbjct: 401 IAREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPV 439
>pdb|1RIQ|A Chain A, The Crystal Structure Of The Catalytic Fragment Of The
Alanyl-Trna Synthetase
Length = 465
Score = 374 bits (960), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/459 (43%), Positives = 274/459 (59%), Gaps = 30/459 (6%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
+ + EI FLSFF+ KGHT V S+ L+P+ND +LLF N+G V FK+VFLG+EKR Y RA
Sbjct: 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGXVPFKNVFLGLEKRPYKRA 62
Query: 61 TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
TS Q+CLR GKHNDLE VGYT+ HHTFF+ LGN+SFGDYFK E++++ WE +T++ L
Sbjct: 63 TSCQKCLRVSGKHNDLEQVGYTSRHHTFFEXLGNFSFGDYFKKEAIEYAWEFVTEVLKLP 122
Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
E+L+++VY D+E Y IW IG+P ER+ R+G++ DNFWQ D GPCGP S
Sbjct: 123 KEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE--------DNFWQXGDVGPCGPSS 174
Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
EI+ D G + G+ RY+EIWN VF Q+N++ N LT LP +DTG
Sbjct: 175 EIYVDRGEEYEGD---------ERYLEIWNLVFXQYNRDENG-----VLTPLPHPNIDTG 220
Query: 241 MGLERLASILQNVYNNYETDLFKTLIK----AAARETNCNNLKNNSLKVIADHIRACVFL 296
GLER+AS+LQ +N+E D+ LI+ + ++ + +L+VIADH+RA F
Sbjct: 221 XGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFA 280
Query: 297 IIDGVFPGNEGRGYVLXXXXXXXXXYGYKLGQNSIFLYKLVKDLIFNTYIIYXXXXXXXX 356
I DGV P NEGRGYV+ +GYKLG + FLYK V ++ Y
Sbjct: 281 ISDGVIPSNEGRGYVIRRILRRAXRFGYKLGIENPFLYKGVDLVVDIXKEPYPELELSRE 340
Query: 357 XXXXXXXXXXXCFRKTLKYGIKILENILLTKPDK----LDGKLAFILYDTYGFPIDLTID 412
F KTLK G + ++ ++ ++ L GK F YDTYGFP+DL +
Sbjct: 341 FVKGIVKGEEKRFIKTLKAGXEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDE 400
Query: 413 ICKEHNVSFNKNDFILEMEKQRNNARLNSKFKDIKLNII 451
I +E + + F E+E+QR AR + K + K+ +
Sbjct: 401 IAREKGLGIDLEGFQCELEEQRERARKHFKVEAKKVKPV 439
>pdb|2ZTG|A Chain A, Crystal Structure Of Archaeoglobus Fulgidus Alanyl-Trna
Synthetase Lacking The C-Terminal Dimerization Domain In
Complex With Ala-Sa
Length = 739
Score = 63.5 bits (153), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 101/487 (20%), Positives = 175/487 (35%), Gaps = 127/487 (26%)
Query: 10 FLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKD-VFLGIEKRNYLRATSIQRCLR 68
+L+FF+ +GH + ++ + + T + + F+ V G+ T Q C+R
Sbjct: 69 YLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQPCIR 128
Query: 69 AGGKHNDLENVGYTNYHHTFFQMLGNWSFG-----DYFKYESLQWTWELLTQIYGLSIER 123
+DL++VG T H T F+ + +F Y+K E++ + ELL
Sbjct: 129 L----DDLDSVGRTGRHLTLFEXXAHHAFNYPGKEIYWKNETVAYCTELL---------- 174
Query: 124 LWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIF 183
N++GV KE ++ K P W + G GPC E
Sbjct: 175 -----------------NELGVKKEDIVY----KEEP-------W--AGGGNAGPCLEAI 204
Query: 184 YDCGSTFHGNPPGSKENFGNRYIEIWNNVF--MQFNKEINPKTGSIKLTKLPKYCVDTGM 241
+E+ VF ++ + E + + + K Y VDTG
Sbjct: 205 VGG-------------------LEVATLVFXNLEEHPEGDIEIKGARYRKXDNYIVDTGY 245
Query: 242 GLERLA-------------------SIL--QNVYNNYETDLFKTLIKAAA---------R 271
GLER +I+ NV N E + + ++ ++ R
Sbjct: 246 GLERFVWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIXGELR 305
Query: 272 ETNCNNLKNNSLKVI--------------------ADHIRACVFLIIDGVFPGNEGRGYV 311
N L+ + + ADH R +F + DG+ P N G GY+
Sbjct: 306 GERLNQLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFXLGDGLVPSNAGAGYL 365
Query: 312 LXXXXXXXXXYGYKLGQNSIFLYKLVKDLIFNTYIIYXXXXXXXXXXXXXXXXXXXCFRK 371
+L + + LY LV+ + I+ +R
Sbjct: 366 ARLXIRRSLRLAEEL-ELGLDLYDLVE---XHKKILGFEFDVPLSTVQEILELEKERYRT 421
Query: 372 TLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFN-KNDFILEM 430
T+ G +++E L+ + KL+ LYD++G P++L + I E D E+
Sbjct: 422 TVSKGTRLVER-LVERKKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEXPKDIYAEL 480
Query: 431 EKQRNNA 437
K+ + A
Sbjct: 481 AKRHSKA 487
>pdb|2ZZF|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain
pdb|2ZZG|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
pdb|2ZZG|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase In Complex
With 5''-O-(N-(L-Alanyl)-Sulfamyoxyl) Adenine Without
Oligomerization Domain
Length = 752
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 82/370 (22%), Positives = 124/370 (33%), Gaps = 127/370 (34%)
Query: 5 EICNKFLSFFKSKGHTIVPSS-----SLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLR 59
E+ KFL FF+ H I P ++P +L + ++ F+ + E
Sbjct: 61 EMREKFLRFFEK--HEIYPHGRVKRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPAN 118
Query: 60 ATSI-QRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFG-----DYFKYESLQWTWELL 113
I Q +R D++NVG T H T F+M+ + +F Y+ E+++ +E
Sbjct: 119 PLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGKPIYWMDETVELAFEFF 174
Query: 114 TQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDT 173
T+ + E D T+ +N W +
Sbjct: 175 TKELKMKPE----------DITFK---------------------------ENPW--AGG 195
Query: 174 GPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEI-NPKTGSIKLTKL 232
G GP E+ Y R +E+ VFMQ+ K N + + K
Sbjct: 196 GNAGPAFEVLY-------------------RGLEVATLVFMQYKKAPENAPQDQVVVIKG 236
Query: 233 PKY------CVDTGMGLERLASILQNVYNNYETDL---FKTLIKAAARET---------- 273
KY VDTG GLERL + Q Y+ L + L K A E
Sbjct: 237 EKYIPMETKVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLKKMAGIEKIDEKILMENS 296
Query: 274 ------------NCNNLKNNSLK--------------------VIADHIRACVFLIIDGV 301
+ L+ K IADH +A F++ DGV
Sbjct: 297 RLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGV 356
Query: 302 FPGNEGRGYV 311
P N GY+
Sbjct: 357 VPSNVKAGYL 366
>pdb|2ZZE|A Chain A, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
pdb|2ZZE|B Chain B, Crystal Structure Of Alanyl-Trna Synthetase Without
Oligomerization Domain In Lysine-Methylated Form
Length = 752
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 97/513 (18%), Positives = 167/513 (32%), Gaps = 133/513 (25%)
Query: 5 EICNKFLSFFKSKGHTIVPSS-----SLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLR 59
E+ FL FF+ H I P ++P +L + ++ F+ + E
Sbjct: 61 EMREXFLRFFEX--HEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPAN 118
Query: 60 ATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFG-----DYFKYESLQWTWELLT 114
I + + D++NVG T H T F+M+ + +F Y+ E+++ +E T
Sbjct: 119 PLVISQ---PSIRFTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFT 175
Query: 115 QIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTG 174
+ + E D T+ +N W + G
Sbjct: 176 KELXMXPE----------DITFK---------------------------ENPW--AGGG 196
Query: 175 PCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQF--NKEINPKTGSI----- 227
GP E+ Y R +E+ VFMQ+ E P+ +
Sbjct: 197 NAGPAFEVLY-------------------RGLEVATLVFMQYXXAPENAPQDQVVVIXGE 237
Query: 228 KLTKLPKYCVDTGMGLERLASILQNVYNNYETDL---FKTLIKAAARET----------- 273
K + VDTG GLERL + Q Y+ L + L A E
Sbjct: 238 KYIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILMENSR 297
Query: 274 -----------NCNNLKNNSLK--------------------VIADHIRACVFLIIDGVF 302
+ L+ K IADH +A F++ DGV
Sbjct: 298 LAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVV 357
Query: 303 PGNEGRGYVLXXXXXXXXXYGYKLGQNSIFLYKLVKDLIFNTYIIYXXXXXXXXXXXXXX 362
P N GY+ + +LG + L ++V I + +
Sbjct: 358 PSNVXAGYLARLLIRKSIRHLRELGLE-VPLSEIVALHIXELHKTFPEFXEMEDIILEMI 416
Query: 363 XXXXXCFRKTLKYGIKILENILLTKPDK----LDGKLAFILYDTYGFPIDLTIDICKEHN 418
+ +TL+ G ++ + K + + Y+++G ++ +I ++
Sbjct: 417 ELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAEKEG 476
Query: 419 VSFNKNDFILEM---EKQRNNARLNSKFKDIKL 448
V N D M E +R + D +L
Sbjct: 477 VKVNIPDNFYSMVAKEAERTKEEKGEELVDFEL 509
>pdb|3CUE|A Chain A, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|G Chain G, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|M Chain M, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|S Chain S, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 219
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 26/101 (25%), Positives = 44/101 (43%), Gaps = 4/101 (3%)
Query: 73 HNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITD 132
+D N G N HT + LG++ D+FK W L Q L ++ + +Y T
Sbjct: 79 RSDTRNGGGNNNKHTNNEKLGSFKGDDFFKEPFTNWNKSGLRQ---LCTDQFTMFIYQTL 135
Query: 133 DETYNIWTNKIGVP-KERVIRIGDKKNSPLYTSDNFWQMSD 172
+ + +P ++ I DK + P TS+ Q++D
Sbjct: 136 TGLKFVAISSSVMPQRQPTIATTDKPDRPKSTSNLAIQIAD 176
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.140 0.435
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,023,042
Number of Sequences: 62578
Number of extensions: 607470
Number of successful extensions: 1042
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1004
Number of HSP's gapped (non-prelim): 15
length of query: 451
length of database: 14,973,337
effective HSP length: 102
effective length of query: 349
effective length of database: 8,590,381
effective search space: 2998042969
effective search space used: 2998042969
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)