Query psy13352
Match_columns 451
No_of_seqs 181 out of 1072
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 17:13:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13352.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13352hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0013 AlaS Alanyl-tRNA synth 100.0 4E-174 9E-179 1418.4 39.4 422 1-440 6-435 (879)
2 PLN02900 alanyl-tRNA synthetas 100.0 1E-171 2E-176 1425.4 40.4 424 1-441 11-461 (936)
3 PRK01584 alanyl-tRNA synthetas 100.0 6E-170 1E-174 1352.7 41.2 420 1-440 1-437 (594)
4 TIGR00344 alaS alanine--tRNA l 100.0 5E-170 1E-174 1405.0 39.5 418 5-442 1-434 (851)
5 PRK00252 alaS alanyl-tRNA synt 100.0 1E-168 2E-173 1397.9 41.8 425 1-442 2-428 (865)
6 KOG0188|consensus 100.0 3E-167 6E-172 1322.5 30.3 424 1-443 2-444 (895)
7 PF01411 tRNA-synt_2c: tRNA sy 100.0 4E-166 9E-171 1322.4 10.5 426 5-443 1-434 (552)
8 TIGR03683 A-tRNA_syn_arch alan 100.0 1E-142 2E-147 1190.7 36.2 369 1-440 56-484 (902)
9 PRK13902 alaS alanyl-tRNA synt 100.0 4E-142 8E-147 1186.1 35.6 369 1-440 59-480 (900)
10 cd00673 AlaRS_core Alanyl-tRNA 100.0 8E-115 2E-119 833.5 20.0 232 3-253 1-232 (232)
11 TIGR00388 glyQ glycyl-tRNA syn 97.0 0.0071 1.5E-07 60.6 11.3 173 1-259 1-177 (293)
12 PRK09348 glyQ glycyl-tRNA synt 96.6 0.036 7.8E-07 55.5 12.6 173 1-259 4-180 (283)
13 cd00733 GlyRS_alpha_core Class 96.3 0.045 9.8E-07 54.7 11.6 171 3-259 2-176 (279)
14 cd00768 class_II_aaRS-like_cor 96.1 0.026 5.6E-07 51.9 8.1 109 4-120 3-135 (211)
15 COG0752 GlyQ Glycyl-tRNA synth 96.0 0.065 1.4E-06 53.5 10.9 172 1-259 5-181 (298)
16 PRK14908 glycyl-tRNA synthetas 95.3 0.16 3.4E-06 59.3 12.3 173 1-259 5-181 (1000)
17 PF01411 tRNA-synt_2c: tRNA sy 95.0 0.0053 1.1E-07 67.3 -0.6 83 137-259 108-193 (552)
18 PF02091 tRNA-synt_2e: Glycyl- 94.9 0.078 1.7E-06 53.3 7.1 170 4-259 2-175 (284)
19 cd00776 AsxRS_core Asx tRNA sy 94.3 0.15 3.3E-06 52.2 7.9 95 4-114 28-138 (322)
20 TIGR00458 aspS_arch aspartyl-t 93.5 0.82 1.8E-05 48.8 12.0 95 4-114 137-247 (428)
21 PRK00488 pheS phenylalanyl-tRN 93.5 0.5 1.1E-05 49.3 10.0 60 178-255 255-324 (339)
22 cd00669 Asp_Lys_Asn_RS_core As 93.4 0.2 4.3E-06 50.2 6.7 97 4-114 5-116 (269)
23 TIGR00462 genX lysyl-tRNA synt 92.5 0.7 1.5E-05 47.1 9.3 99 4-118 5-124 (304)
24 cd00777 AspRS_core Asp tRNA sy 90.8 0.53 1.2E-05 47.5 6.3 100 4-115 5-117 (280)
25 TIGR00499 lysS_bact lysyl-tRNA 86.7 4.6 0.0001 44.1 10.3 95 4-113 176-293 (496)
26 PRK05159 aspC aspartyl-tRNA sy 86.3 2.8 6.1E-05 44.8 8.4 85 4-100 140-239 (437)
27 PTZ00326 phenylalanyl-tRNA syn 81.5 3.3 7.2E-05 45.3 6.5 124 58-255 358-483 (494)
28 KOG1501|consensus 79.9 2.4 5.2E-05 46.0 4.6 71 236-306 72-158 (636)
29 PTZ00450 macrophage migration 79.3 2.4 5.1E-05 37.5 3.7 24 107-130 79-102 (113)
30 PTZ00397 macrophage migration 76.6 3.4 7.3E-05 35.9 3.9 29 102-130 74-102 (116)
31 KOG1759|consensus 71.6 4.9 0.00011 36.0 3.7 26 105-130 76-101 (115)
32 COG0016 PheS Phenylalanyl-tRNA 71.3 4.5 9.7E-05 42.3 3.9 60 178-255 262-321 (335)
33 PF01422 zf-NF-X1: NF-X1 type 67.6 2.4 5.2E-05 26.9 0.6 9 173-181 12-20 (20)
34 COG2024 Phenylalanyl-tRNA synt 67.3 8.3 0.00018 41.3 4.8 66 177-255 279-344 (536)
35 PTZ00401 aspartyl-tRNA synthet 63.0 16 0.00034 40.7 6.2 95 4-114 217-328 (550)
36 PRK09350 poxB regulator PoxA; 62.0 26 0.00057 35.8 7.3 108 4-128 9-138 (306)
37 PF11867 DUF3387: Domain of un 61.5 77 0.0017 32.7 10.7 196 229-432 31-256 (335)
38 PF01187 MIF: Macrophage migra 61.4 8.6 0.00019 33.4 3.2 24 107-130 77-100 (114)
39 cd00670 Gly_His_Pro_Ser_Thr_tR 60.5 13 0.00027 35.3 4.4 105 4-120 6-149 (235)
40 PF01409 tRNA-synt_2d: tRNA sy 58.6 5.1 0.00011 39.9 1.4 22 235-256 212-233 (247)
41 PLN02850 aspartate-tRNA ligase 54.5 29 0.00064 38.4 6.5 97 4-113 229-339 (530)
42 cd00773 HisRS-like_core Class 52.6 28 0.0006 34.2 5.4 110 4-121 6-139 (261)
43 smart00438 ZnF_NFX Repressor o 48.3 8 0.00017 26.0 0.6 11 173-183 12-22 (26)
44 cd00830 KAS_III Ketoacyl-acyl 47.0 5.6 0.00012 39.4 -0.4 81 85-184 206-287 (320)
45 PLN02853 Probable phenylalanyl 46.6 19 0.0004 39.6 3.4 23 4-26 224-246 (492)
46 PF01361 Tautomerase: Tautomer 46.3 31 0.00066 26.2 3.7 29 102-130 16-44 (60)
47 PRK06129 3-hydroxyacyl-CoA deh 45.5 33 0.00071 34.6 4.8 69 293-363 231-305 (308)
48 KOG2783|consensus 44.9 11 0.00023 40.4 1.2 34 235-271 295-328 (436)
49 TIGR00013 taut 4-oxalocrotonat 43.4 37 0.00081 25.8 3.8 30 101-130 16-45 (63)
50 PF01343 Peptidase_S49: Peptid 40.9 35 0.00075 31.1 3.8 67 353-419 83-153 (154)
51 PRK01964 4-oxalocrotonate taut 40.6 39 0.00085 26.0 3.6 30 101-130 16-45 (64)
52 PRK03932 asnC asparaginyl-tRNA 39.2 64 0.0014 34.8 6.1 100 4-113 137-254 (450)
53 COG3981 Predicted acetyltransf 39.1 25 0.00055 33.7 2.7 34 297-331 101-134 (174)
54 PF00152 tRNA-synt_2: tRNA syn 37.8 17 0.00037 37.1 1.5 101 4-114 26-141 (335)
55 TIGR00443 hisZ_biosyn_reg ATP 36.1 76 0.0016 32.2 5.8 111 3-127 11-148 (314)
56 PRK12420 histidyl-tRNA synthet 35.2 1.3E+02 0.0028 31.9 7.5 104 4-119 22-154 (423)
57 TIGR00457 asnS asparaginyl-tRN 34.9 19 0.00041 38.9 1.3 29 235-263 417-445 (453)
58 cd00491 4Oxalocrotonate_Tautom 34.7 55 0.0012 24.3 3.5 30 101-130 15-44 (58)
59 cd00775 LysRS_core Lys_tRNA sy 34.1 19 0.00042 37.1 1.1 95 4-115 12-124 (329)
60 PRK03932 asnC asparaginyl-tRNA 33.6 21 0.00045 38.6 1.3 29 235-263 414-442 (450)
61 PLN02850 aspartate-tRNA ligase 33.5 19 0.00042 39.8 1.1 29 235-263 494-522 (530)
62 PRK12444 threonyl-tRNA synthet 33.5 5.4E+02 0.012 28.9 12.4 123 5-140 279-440 (639)
63 PLN02221 asparaginyl-tRNA synt 32.9 1.1E+02 0.0023 34.6 6.6 46 57-112 326-372 (572)
64 PRK06462 asparagine synthetase 32.8 21 0.00046 36.9 1.2 102 4-114 34-152 (335)
65 COG0017 AsnS Aspartyl/asparagi 32.1 26 0.00057 38.0 1.8 78 4-92 138-226 (435)
66 PRK02220 4-oxalocrotonate taut 31.8 60 0.0013 24.5 3.3 30 101-130 16-45 (61)
67 PRK06462 asparagine synthetase 31.8 1.3E+02 0.0029 31.1 6.8 29 235-263 299-327 (335)
68 PTZ00401 aspartyl-tRNA synthet 31.5 23 0.00049 39.5 1.2 29 235-263 514-542 (550)
69 PRK09537 pylS pyrolysyl-tRNA s 31.5 1.8E+02 0.0038 31.6 7.8 170 4-255 207-399 (417)
70 cd00775 LysRS_core Lys_tRNA sy 31.4 1.3E+02 0.0027 31.2 6.6 28 235-262 297-324 (329)
71 PTZ00425 asparagine-tRNA ligas 31.2 22 0.00048 39.9 1.1 29 235-263 550-578 (586)
72 PRK05963 3-oxoacyl-(acyl carri 30.5 28 0.00061 34.9 1.6 75 88-180 212-288 (326)
73 PLN02603 asparaginyl-tRNA synt 30.4 24 0.00053 39.4 1.2 30 234-263 528-557 (565)
74 COG0751 GlyS Glycyl-tRNA synth 30.3 6.5E+02 0.014 29.2 12.2 63 281-344 450-512 (691)
75 PLN02532 asparagine-tRNA synth 30.0 25 0.00053 39.9 1.2 29 235-263 597-625 (633)
76 PLN02221 asparaginyl-tRNA synt 29.7 24 0.00053 39.4 1.1 30 234-263 535-564 (572)
77 PRK12295 hisZ ATP phosphoribos 29.6 1.1E+02 0.0023 32.4 5.8 107 2-120 6-136 (373)
78 PLN02502 lysyl-tRNA synthetase 29.3 26 0.00056 39.1 1.2 92 4-112 233-342 (553)
79 PRK09350 poxB regulator PoxA; 29.2 31 0.00068 35.2 1.7 22 235-256 282-303 (306)
80 COG0104 PurA Adenylosuccinate 29.2 58 0.0012 35.3 3.7 74 313-386 140-215 (430)
81 PRK12445 lysyl-tRNA synthetase 29.1 26 0.00056 38.5 1.2 84 4-100 188-287 (505)
82 PF10440 WIYLD: Ubiquitin-bind 28.9 1.8E+02 0.0039 23.7 5.6 34 316-349 11-44 (65)
83 PRK12292 hisZ ATP phosphoribos 28.7 1.3E+02 0.0027 31.7 6.1 106 4-120 21-154 (391)
84 PRK00484 lysS lysyl-tRNA synth 28.0 27 0.00059 38.1 1.1 82 4-100 176-275 (491)
85 cd06008 NF-X1-zinc-finger Pres 26.9 26 0.00057 26.4 0.5 11 173-183 22-32 (49)
86 PRK07204 3-oxoacyl-(acyl carri 26.8 50 0.0011 33.2 2.6 60 108-184 234-294 (329)
87 PTZ00417 lysine-tRNA ligase; P 26.3 31 0.00066 38.8 1.1 23 240-262 556-578 (585)
88 PF05634 APO_RNA-bind: APO RNA 26.2 40 0.00087 33.1 1.7 13 173-185 98-110 (204)
89 COG0060 IleS Isoleucyl-tRNA sy 25.3 33 0.00072 40.5 1.2 47 380-428 70-127 (933)
90 PRK00745 4-oxalocrotonate taut 25.3 1E+02 0.0022 23.3 3.6 30 101-130 16-45 (62)
91 cd00774 GlyRS-like_core Glycyl 24.4 2.2E+02 0.0047 28.1 6.6 75 59-141 109-195 (254)
92 PTZ00425 asparagine-tRNA ligas 23.9 2.7E+02 0.0059 31.5 7.8 49 57-113 343-397 (586)
93 COG1244 Predicted Fe-S oxidore 23.7 1.4E+02 0.0031 31.5 5.3 106 232-349 160-282 (358)
94 COG2250 Uncharacterized conser 23.4 3.2E+02 0.0069 24.6 6.9 76 306-385 55-130 (132)
95 PRK00476 aspS aspartyl-tRNA sy 23.4 2.2E+02 0.0048 32.1 7.0 101 4-115 145-257 (588)
96 TIGR00469 pheS_mito phenylalan 23.1 42 0.0009 36.7 1.3 19 238-256 317-335 (460)
97 PRK12293 hisZ ATP phosphoribos 22.7 2E+02 0.0044 29.0 6.1 98 4-120 23-142 (281)
98 PLN02603 asparaginyl-tRNA synt 22.6 1.2E+02 0.0026 34.0 4.8 88 4-100 230-357 (565)
99 KOG1035|consensus 22.3 1.9E+02 0.0042 35.5 6.6 121 4-149 936-1084(1351)
100 PTZ00385 lysyl-tRNA synthetase 22.3 40 0.00087 38.4 1.1 82 4-100 237-336 (659)
101 COG0017 AsnS Aspartyl/asparagi 22.2 66 0.0014 35.0 2.6 32 233-264 397-428 (435)
102 cd04758 Commd10 COMM_Domain co 22.2 5.3E+02 0.012 24.3 8.5 95 316-415 1-97 (186)
103 TIGR00706 SppA_dom signal pept 22.0 1.6E+02 0.0035 28.0 5.0 25 354-378 139-163 (207)
104 cd02433 Nodulin-21_like_2 Nodu 21.6 3.8E+02 0.0083 26.6 7.6 103 286-417 16-124 (234)
105 PF00152 tRNA-synt_2: tRNA syn 21.6 80 0.0017 32.2 3.0 29 235-263 303-331 (335)
106 PF11887 DUF3407: Protein of u 21.4 7.1E+02 0.015 25.0 9.7 88 290-381 15-108 (267)
107 TIGR02367 PylS pyrrolysyl-tRNA 21.3 2.1E+02 0.0045 31.4 6.1 170 4-255 243-435 (453)
108 PRK07080 hypothetical protein; 21.2 1.5E+02 0.0034 31.0 4.9 83 31-122 124-213 (317)
109 PRK14063 exodeoxyribonuclease 21.2 1.1E+02 0.0024 25.3 3.2 31 373-404 7-38 (76)
110 COG1190 LysU Lysyl-tRNA synthe 21.1 47 0.001 36.6 1.3 24 238-261 471-494 (502)
111 PLN02530 histidine-tRNA ligase 21.0 2.2E+02 0.0048 31.0 6.4 121 4-141 88-236 (487)
112 PF13393 tRNA-synt_His: Histid 21.0 70 0.0015 31.9 2.4 113 4-126 14-151 (311)
113 PF09862 DUF2089: Protein of u 20.5 1.5E+02 0.0032 26.6 4.0 56 338-399 53-111 (113)
114 PRK14064 exodeoxyribonuclease 20.0 1.2E+02 0.0027 25.0 3.2 32 372-404 7-39 (75)
No 1
>COG0013 AlaS Alanyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.3e-174 Score=1418.42 Aligned_cols=422 Identities=56% Similarity=0.948 Sum_probs=411.7
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVG 80 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG 80 (451)
||++|||++||+||++|||++||||||||+||||||||||||+||||||+|.++||++|+||||||||+ |||||||
T Consensus 6 ~t~~EiR~~FL~FF~~kgH~~v~s~slVP~nDptLLftnAGm~~FK~~f~g~v~p~~~r~~~sQkcIR~----NDieNVG 81 (879)
T COG0013 6 LTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPANRAVTSQKCIRT----NDIDNVG 81 (879)
T ss_pred CCHHHHHHHHHHHHHHCCCeecCCCCcCCCCCCCeEEeecccccchhhhcCCCCCCCCCeecccccccc----CchhhcC
Confidence 588999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCC
Q psy13352 81 YTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSP 160 (451)
Q Consensus 81 ~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~ 160 (451)
+|+|||||||||||||||||||+|||.|||||||++||||||+||||||++||||+++|++.+|+|++||+|+|.+
T Consensus 82 ~T~RHhTfFEMLGNfSFGdYFKeeAI~~AwEflT~~lgl~~ekL~vtvy~~Ddea~~~W~~~~gip~~rIir~~~~---- 157 (879)
T COG0013 82 YTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGLPKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIGAS---- 157 (879)
T ss_pred ccccchhHHHhhhcCchhHHHHHHHHHHHHHHHHhhcCCCHHHEEEEEecCchHHHHHHHhhcCCCHHHeeecCcC----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeecccccccc-CCCCCCCcccccCCCCcccc
Q psy13352 161 LYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKE-INPKTGSIKLTKLPKYCVDT 239 (451)
Q Consensus 161 ~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~-~d~~~G~~~l~~Lp~k~IDT 239 (451)
||||+||+ ||||||||||||+|+.+++++++.+.+|++|||||||||||||||+ .+ | +|.|||+|||||
T Consensus 158 ----dNfW~~G~-GPcGPcsEI~yD~G~~~~~~~~~~~~~d~dR~lEiwNLVFmQfnr~~~~---g--~~~~Lp~k~IDT 227 (879)
T COG0013 158 ----DNFWEMGD-GPCGPCSEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNRDPGD---G--NYTPLPKKNIDT 227 (879)
T ss_pred ----CCCCCCCC-cCCCCceEEEEcCCcccCCCCCCCcCCCCCceEEEeeeeehhhccCCCC---C--CcccCCCCCccc
Confidence 99999999 9999999999999999998888999999999999999999999999 57 8 999999999999
Q ss_pred CchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCCC-----CcceEEeechhhhhhhhhhcCcccCCCCCchHHHH
Q psy13352 240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLK-----NNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRR 314 (451)
Q Consensus 240 GmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~~-----~~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRr 314 (451)
|||||||+|||||+|||||||+|.|||+.+++++|..+.. +.++||||||+||++|||+|||+|||+||||||||
T Consensus 228 GmGLERi~~vlQ~~~tnyd~dlf~~ii~~~e~~~g~~~~~~~~~~~~s~rVIADH~Rs~~f~iaDGv~PSNegrGYvlRr 307 (879)
T COG0013 228 GMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLAFMIADGVLPSNEGRGYVLRR 307 (879)
T ss_pred CccHHHHHHHHcCCCcchhhhhhHHHHHHHHHHhCCcCCccccccceeEEEehhHHHHHHHHHhCCCCcCCCCccHHHHH
Confidence 9999999999999999999999999999999999987533 55999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C-CCCCC
Q psy13352 315 IIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLT-K-PDKLD 392 (451)
Q Consensus 315 ilRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~-~-~~~l~ 392 (451)
|||||+||+++||++.|||++||+++++.|+++||||+++++.|+++|+.||++|.+||++|+++|++++++ + ++.||
T Consensus 308 iiRRa~R~~~~LG~~~~fl~~LV~~~~~~m~~~ypel~~~~~~I~~vl~~EEe~F~~TL~~G~~l~~~~~~~~~~~~~l~ 387 (879)
T COG0013 308 IIRRALRHGKLLGIKEPFLYKLVDTVIDEMGDAYPELKEKEDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKTLD 387 (879)
T ss_pred HHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999988 3 36899
Q ss_pred hHHHHHHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhc
Q psy13352 393 GKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLN 440 (451)
Q Consensus 393 g~~af~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~ 440 (451)
|++||+||||||||+|||+|||+|+|++||+++|+.+|++||++||++
T Consensus 388 ge~afkLYDTyGfP~eLt~eia~e~g~~VD~~~f~~~m~~qr~~ar~~ 435 (879)
T COG0013 388 GEDAFKLYDTYGFPVELTEEIAEERGLKVDEPGFEYAMEAQRERARAS 435 (879)
T ss_pred hHHheeehhcCCCCHHHHHHHHHHcCCeeccccHHHHHHHHHHHhhhc
Confidence 999999999999999999999999999999999999999999999975
No 2
>PLN02900 alanyl-tRNA synthetase
Probab=100.00 E-value=9.9e-172 Score=1425.38 Aligned_cols=424 Identities=51% Similarity=0.864 Sum_probs=406.5
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCC-----CCCCCcccccccccCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKR-----NYLRATSIQRCLRAGGKHND 75 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p-----~~~r~~~~QkCiR~gGkhnD 75 (451)
||++|||++||+||+++||++||||||||+||||||||||||+||||||+|+++| |++|+||||||||+||||||
T Consensus 11 ~~~~eiR~~Fl~FF~~~gH~~v~s~slvp~~dptllftnAGm~~Fk~~f~G~~~p~~~~~~~~R~~~~QkCiR~gGKHnD 90 (936)
T PLN02900 11 WPGDRIRRTFLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQKCIRAGGKHND 90 (936)
T ss_pred CCHHHHHHHHHHHHHhCCCEEeCCCCcCCCCCCCeeeeecchhhhhhhhcCCCCCCCCCCCCCceeeecccccCCCCCCC
Confidence 7899999999999999999999999999999999999999999999999999998 78899999999999999999
Q ss_pred CCCCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcH------HHHHHHHhhcCCCCCc
Q psy13352 76 LENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDD------ETYNIWTNKIGVPKER 149 (451)
Q Consensus 76 ldnVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~------Ea~~iW~~~~Gv~~~r 149 (451)
|||||+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++|+ ||++||+++ ||++|
T Consensus 91 lenVG~t~rHhTfFEMlGnfSfgdYfK~eaI~~awe~lT~~l~i~~~~l~vTv~~~D~~~~~d~Ea~~iW~~~--~~~~r 168 (936)
T PLN02900 91 LDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRLYATYFGGDEKQAPDDEARAIWLDY--LPEER 168 (936)
T ss_pred HhhccCCCCchHHHHhhhccchhhhhHHHHHHHHHHHHHHhcCCCHHHEEEEEeCCCCCcCCCHHHHHHHHHh--CCHHH
Confidence 9999999999999999999999999999999999999999999999999999999888 999999997 99999
Q ss_pred eeecCCCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCccc
Q psy13352 150 VIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKL 229 (451)
Q Consensus 150 I~~~g~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l 229 (451)
|+++|.+ ||||+||+|||||||||||||+|+.+++ +.+ ++.+|+|||||||||||||+|+.+ | +|
T Consensus 169 I~~~~~~--------dNfW~~G~tGpcGPcsEi~yD~g~~~~~-~~~-~~~~~~r~lEiwNlVFmq~~~~~~---g--~~ 233 (936)
T PLN02900 169 VLPFGCK--------DNFWEMGDTGPCGPCSEIHYDRIGERDA-ADL-VNNDDPRFIEIWNLVFIQFNREAD---G--SL 233 (936)
T ss_pred eecCCcc--------cCCccCCCCcCCCCCeEEEEecCCccCc-ccc-CCCCCCCEEEEeeeeeeeeeecCC---C--ce
Confidence 9999999 9999999999999999999999988643 222 556899999999999999999999 9 99
Q ss_pred ccCCCCccccCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhC------CCC-----CCCcceEEeechhhhhhhhhh
Q psy13352 230 TKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETN------CNN-----LKNNSLKVIADHIRACVFLII 298 (451)
Q Consensus 230 ~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g------~~~-----~~~~a~rvIaDH~Ra~~f~Ia 298 (451)
+|||+||||||||||||||||||++||||||+|.|||++|++++| ..+ ..+.|+||||||+||++|||+
T Consensus 234 ~~Lp~~~IDTGmGLERl~~vlqg~~snydtDlf~pii~~i~~~~~~~~~~~~~y~~~~~~~~~a~rviaDH~R~~~f~i~ 313 (936)
T PLN02900 234 KPLPAKHVDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRVVADHIRTLSFAIA 313 (936)
T ss_pred eeCCCCeeecCcCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCccccccccccccccceeeeeehhhHHHHHHHHh
Confidence 999999999999999999999999999999999999999999998 332 246899999999999999999
Q ss_pred cCcccCCCCCchHHHHHHHHHHHHHHH-hCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHH
Q psy13352 299 DGVFPGNEGRGYVLRRIIRRAIRYGYK-LGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGI 377 (451)
Q Consensus 299 DGv~PsN~GrGYvlRrilRRa~r~~~~-lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~ 377 (451)
|||+|||+|||||||||||||+|++++ ||++.|||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+
T Consensus 314 DGv~PsN~grgYvlRrilRRa~r~~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~ 393 (936)
T PLN02900 314 DGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELSGDVFPEVKKNEKRITEIIAEEELSFGKTLEKGI 393 (936)
T ss_pred cCCccCCCCccHHHHHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 8999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc-C---CCCCChHHHHHHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhcc
Q psy13352 378 KILENILLT-K---PDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNS 441 (451)
Q Consensus 378 ~~l~~~l~~-~---~~~l~g~~af~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~~ 441 (451)
++|++.+++ + .+.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||+++
T Consensus 394 ~~l~~~i~~~~~~~~~~l~g~~af~LydTyGfP~dlt~~ia~e~g~~vD~~~F~~~~~~~~~~s~~~~ 461 (936)
T PLN02900 394 EKFKKALAAAKANGGPVLSGKDAFLLYDTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAH 461 (936)
T ss_pred HHHHHHHHHHhhcCCCcCCHHHHHHHHhccCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHHhhh
Confidence 999999975 2 267999999999999999999999999999999999999999999999999764
No 3
>PRK01584 alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=5.5e-170 Score=1352.72 Aligned_cols=420 Identities=40% Similarity=0.708 Sum_probs=404.2
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVG 80 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG 80 (451)
||++|||++||+||++|||+++|||||||+||||||||||||+||||||+|+++||++|+||||||||+ |||||||
T Consensus 1 ~~~~eiR~~fl~FF~~kgH~~~~s~slvp~~d~tllftnAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~----~Dle~VG 76 (594)
T PRK01584 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRLVDVQKCLRT----GDIDEVG 76 (594)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc----ccccccC
Confidence 899999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCchhhhhhhccccccccchHHHHHHHHHHhhhh--cCCCCCceEEEEeCC------cHHHHHHHHhhcCCCCCceee
Q psy13352 81 YTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQI--YGLSIERLWITVYIT------DDETYNIWTNKIGVPKERVIR 152 (451)
Q Consensus 81 ~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~--lgl~~~rL~vTv~~~------D~Ea~~iW~~~~Gv~~~rI~~ 152 (451)
|+|||||||||||||||||||+|||+|||||||++ |||||+|||||||++ |+||++||++ +|||++||++
T Consensus 77 -~~rHhTfFEMlGnfSfgdYfK~eai~~awe~lt~~~~l~l~~~rl~vTv~~~~~~~~~D~Ea~~iW~~-~g~~~~rI~~ 154 (594)
T PRK01584 77 -DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLNIPKDKLYVTVFEGDEEIPRDEETASVWES-LGIPKDRIFY 154 (594)
T ss_pred -CCcchhHHHhhccccHhhhhHHHHHHHHHHHhccchhcCCCHHHeEEEEeCCCCCCCCCHHHHHHHHH-cCCCHHHeee
Confidence 89999999999999999999999999999999998 999999999999987 9999999999 9999999999
Q ss_pred cCCCCCCCCCCCCCcc-cCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCccccc
Q psy13352 153 IGDKKNSPLYTSDNFW-QMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTK 231 (451)
Q Consensus 153 ~g~~~~~~~~~~dNfW-~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~ 231 (451)
+|.+ |||| +||++||||||||||||+|++ ++...+.++++|+||||||||||||||++++ | +|+|
T Consensus 155 ~~~~--------dNfW~~~G~~GPCGPcsEI~~d~g~~-~~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~---g--~~~~ 220 (594)
T PRK01584 155 LSRE--------HNWWGPVGETGPCGPDTEIFVDTGKP-KCSVNCRPTCSCGKYFEIWNNVFMQYNKDED---G--NYEE 220 (594)
T ss_pred CCCC--------CCcccccCCCcCCCCceEEEEecCCc-ccccccCCCCCCCceEEEeeeeeeeeeecCC---C--cccc
Confidence 9998 9999 899999999999999999987 3332234567899999999999999999999 9 9999
Q ss_pred CCCCccccCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCC----CCCcceEEeechhhhhhhhhhc--CcccCC
Q psy13352 232 LPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNN----LKNNSLKVIADHIRACVFLIID--GVFPGN 305 (451)
Q Consensus 232 Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~----~~~~a~rvIaDH~Ra~~f~IaD--Gv~PsN 305 (451)
||+||||||||||||||||||++||||||+|.|||++|++++|+++ ..+.|+||||||+||++|||+| ||+|||
T Consensus 221 Lp~k~IDTGmGLERl~~vlqg~~s~ydtdlf~pii~~i~~~~~~~y~~~~~~~~a~rvIaDH~R~~~f~i~D~~Gv~PsN 300 (594)
T PRK01584 221 LKRKCVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKIYGQNEEDDRSIRIIADHIRAACFILGDPFVVLPSN 300 (594)
T ss_pred CCCCceeCCcCHHHHHHHHcCCCCccchhhhHHHHHHHHHHhCCCcCCCCCCceeEEEEecHHHHHHHHhhcccCCCCCC
Confidence 9999999999999999999999999999999999999999999864 3468999999999999999999 999999
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13352 306 EGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILL 385 (451)
Q Consensus 306 ~GrGYvlRrilRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~ 385 (451)
+|||||||||||||+|+|++||++.+||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.++
T Consensus 301 ~grGYvlRrilRRa~r~~~~lg~~~~fl~~lv~~v~~~~~~~ypel~~~~~~I~~ii~~EE~~F~~tl~~G~~~l~~~i~ 380 (594)
T PRK01584 301 VGQGYVLRRLIRRSIRHAKKLGIESHFLADLVDSVEEIYGSFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIP 380 (594)
T ss_pred CCCchHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHhhhChHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred c--CCCCCChHHHHHHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhc
Q psy13352 386 T--KPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLN 440 (451)
Q Consensus 386 ~--~~~~l~g~~af~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~ 440 (451)
+ +++.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++
T Consensus 381 ~~~~~~~~~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~~~~~ 437 (594)
T PRK01584 381 NLGSSKIIPGDIAFKLYDTYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKG 437 (594)
T ss_pred HhccCCccCHHHHHhhhccCCCCHHHHHHHHHHcCCeecHHHHHHHHHHHHHHHhhc
Confidence 6 356899999999999999999999999999999999999999999999999975
No 4
>TIGR00344 alaS alanine--tRNA ligase. The model describes alanine--tRNA ligase. This enzyme catalyzes the reaction (tRNAala + L-alanine + ATP = L-alanyl-tRNAala + pyrophosphate + AMP).
Probab=100.00 E-value=4.9e-170 Score=1404.97 Aligned_cols=418 Identities=53% Similarity=0.907 Sum_probs=402.3
Q ss_pred HHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCCCCCC
Q psy13352 5 EICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNY 84 (451)
Q Consensus 5 eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG~t~r 84 (451)
|||++||+||++|||++||||||||+||||||||||||+||||||+|+++||++|+||||||||+ |||||||+|+|
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~slvp~~dptllf~nAGm~~fk~~f~G~~~p~~~r~~~~QkCiR~----nDld~VG~t~r 76 (851)
T TIGR00344 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQPCIRL----NDIENVGRTAR 76 (851)
T ss_pred CHHHHHHHHHHhCCCEEcCCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc----cchhhhcCCCc
Confidence 69999999999999999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred chhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCCCCCC
Q psy13352 85 HHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTS 164 (451)
Q Consensus 85 HhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~~~~~ 164 (451)
||||||||||||||||||+|||+|||||||++|||||+|||||||++|+||++||++ +|||++||+++|.+
T Consensus 77 HhTfFEMlGnfSFgdYfK~eai~~awe~lT~~~~i~~~rl~vTv~~~D~ea~~iW~~-~g~~~~~i~~~~~~-------- 147 (851)
T TIGR00344 77 HHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERLYVTVYEDDEEAYEIWEK-HGIPAERIIRCGDK-------- 147 (851)
T ss_pred chhhHHhhcccchhhhhHHHHHHHHHHHHhhhcCCChHHEEEEEcCCCHHHHHHHHh-cCCCHHHcccCCcc--------
Confidence 999999999999999999999999999999999999999999999999999999999 99999999999998
Q ss_pred CCcccCCCCCCCCCceeEEEecCCCCCCCCCCCC--CCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccccCch
Q psy13352 165 DNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSK--ENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMG 242 (451)
Q Consensus 165 dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~--~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~IDTGmG 242 (451)
||||+||+ ||||||||||||+|+.++| +++.+ +.+|+|||||||||||||||+++ | +|+|||+||||||||
T Consensus 148 dNfW~~G~-GpcGPcsEi~yD~g~~~~~-~~~~~~~~~~~~r~lEiwNlVFmq~~~~~~---g--~~~~Lp~~~IDTGmG 220 (851)
T TIGR00344 148 DNFWDMGD-GPCGPCTEIYYDRGEFVGG-KPGEPEFFEENDRYVEVWNLVFMQFNRDPD---G--NYTPLPKKNIDTGMG 220 (851)
T ss_pred CCcCCCCC-cCCccCeEEEEecCcccCC-CCCcccccCCCCcEEEEeeeeeEeeeecCC---C--ceeeCCCCeeecCcC
Confidence 99999999 9999999999999998754 34432 46899999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCC-------------CCcceEEeechhhhhhhhhhcCcccCCCCCc
Q psy13352 243 LERLASILQNVYNNYETDLFKTLIKAAARETNCNNL-------------KNNSLKVIADHIRACVFLIIDGVFPGNEGRG 309 (451)
Q Consensus 243 LERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~-------------~~~a~rvIaDH~Ra~~f~IaDGv~PsN~GrG 309 (451)
||||+|||||++||||||+|.|||++|++++|+.+. .+.++||||||+||++|||+|||+|||+|||
T Consensus 221 LERl~~vlqg~~snydtD~f~~ii~~i~~~~g~~y~~~~~~~~d~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grg 300 (851)
T TIGR00344 221 LERFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADHTRALAFMLADGVVPSNEGRG 300 (851)
T ss_pred HHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCcCccccccccccccchheeeehhhhhhhhhhhccCcccCCCCCc
Confidence 999999999999999999999999999999998631 1359999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC
Q psy13352 310 YVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLT-KP 388 (451)
Q Consensus 310 YvlRrilRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~-~~ 388 (451)
||||||||||+|++++||++.|||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++ ++
T Consensus 301 YvlRrilRRa~r~~~~lg~~~~fl~~lv~~~~~~m~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~l~~~~~~~~~ 380 (851)
T TIGR00344 301 YVLRRLIRRALRHGKKLGLKEAFLYKLVPTLIEVLGDYYPELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGK 380 (851)
T ss_pred hhHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhhChHhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999986 44
Q ss_pred CCCChHHHHHHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhccc
Q psy13352 389 DKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSK 442 (451)
Q Consensus 389 ~~l~g~~af~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~~~ 442 (451)
+.|||++||+||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 381 ~~i~g~~af~LydTyGfP~dlt~~~a~e~g~~vd~~~F~~~~~~~~~~sr~~~~ 434 (851)
T TIGR00344 381 KELDGEDAFKLYDTYGFPVELTKEIAEERGLTVDIPGFETLMAEQRERSKAASQ 434 (851)
T ss_pred CccCHHHHHHHHHccCCCHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhhhhh
Confidence 679999999999999999999999999999999999999999999999998643
No 5
>PRK00252 alaS alanyl-tRNA synthetase; Reviewed
Probab=100.00 E-value=1e-168 Score=1397.87 Aligned_cols=425 Identities=61% Similarity=1.012 Sum_probs=413.8
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVG 80 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG 80 (451)
||++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++||++|+||||||||+ |||||||
T Consensus 2 ~~~~eiR~~fl~fF~~~~H~~v~s~~lvp~~d~~llf~nAGm~~fk~~f~g~~~p~~~r~~~~QkCiR~----nDld~VG 77 (865)
T PRK00252 2 MTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRATTSQKCIRT----NDLENVG 77 (865)
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcCCCCCCCeeeeccchhhhhHHhcCCCCCCCCCcccccccccc----cchhhcc
Confidence 799999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred CCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCC
Q psy13352 81 YTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSP 160 (451)
Q Consensus 81 ~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~ 160 (451)
+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||.+|+||++||++.+|||++||+++|.+
T Consensus 78 ~t~rHhTfFEMlGn~sfgdYfK~eai~~awe~lt~~~~i~~~~l~vt~~~~D~e~~~iW~~~~g~~~~~i~~~~~~---- 153 (865)
T PRK00252 78 YTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLPKEKLYVTVYEDDDEAYDIWKKEIGVPPERIIRIGKK---- 153 (865)
T ss_pred CCCCchHHHHHhcccchhhhhHHHHHHHHHHHHHHHhCCCHHHEEEEEcCCCHHHHHHHHhccCCCHHHeecCCcc----
Confidence 9999999999999999999999999999999999999999999999999999999999999899999999999998
Q ss_pred CCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccccC
Q psy13352 161 LYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240 (451)
Q Consensus 161 ~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~IDTG 240 (451)
||||+||+|||||||||||||+|+.++|++++.++.+++||||||||||||||++.+ | +|.|||+||||||
T Consensus 154 ----dNfW~~G~~GpcGPcsEi~~d~g~~~~~~~~~~~~~~~~~~lEiwNlVF~q~~~~~~---g--~~~~Lp~~~iDTG 224 (865)
T PRK00252 154 ----DNFWSMGDTGPCGPCSEIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDED---G--NLTPLPKKNIDTG 224 (865)
T ss_pred ----CCccccCCCcCCCCCeEEEEecCcccCCCCCCCCcCCCCcEEEEeeeeeEeeeecCC---C--ceeeCCCCeeecC
Confidence 999999999999999999999999987777777888999999999999999999988 8 9999999999999
Q ss_pred chHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCCCCcceEEeechhhhhhhhhhcCcccCCCCCchHHHHHHHHHH
Q psy13352 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAI 320 (451)
Q Consensus 241 mGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~~~~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRRa~ 320 (451)
||||||+|||||++||||||+|.|||++|++++|+++..+.||||||||+||++|||+||++|||+|||||||||||||+
T Consensus 225 ~GlER~~~ilq~~~snydtd~f~~~i~~i~~~~~~~y~~~~a~rviaDH~R~~~f~i~DG~~Psn~grgYvlRrilRRa~ 304 (865)
T PRK00252 225 MGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGVKYEDDVSFRVIADHIRAVAFLIADGVLPSNEGRGYVLRRILRRAV 304 (865)
T ss_pred cCHHHHHHHHcCCCCcchhhhHHHHHHHHHHHhCCCCCCCceEEEEcchHHHHHHHHccCcccCCCCcchHHHHHHHHHH
Confidence 99999999999999999999999999999999998776789999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCChHHHHH
Q psy13352 321 RYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTK--PDKLDGKLAFI 398 (451)
Q Consensus 321 r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~~--~~~l~g~~af~ 398 (451)
|++++||++.|||++||+.|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++. ++.|||++||+
T Consensus 305 r~~~~lg~~~~~l~~lv~~~~~~~~~~ypel~~~~~~i~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~~~~~~l~g~~~f~ 384 (865)
T PRK00252 305 RHGRLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEKVLKAEEERFLKTLERGLKLLEEALAKLKAGKVLSGEDAFK 384 (865)
T ss_pred HHHHHhCCCchHHHHHHHHHHHHHhhhChhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999872 25799999999
Q ss_pred HHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhccc
Q psy13352 399 LYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSK 442 (451)
Q Consensus 399 LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~~~ 442 (451)
||||||||+|||++||+|+|++||+++|+++|++||++||++++
T Consensus 385 LydtyGfP~dlt~~~a~e~g~~vd~~~f~~~~~~~~~~s~~~~~ 428 (865)
T PRK00252 385 LYDTYGFPLDLTAEIARERGLTVDEEGFEAAMEEQRERARAARK 428 (865)
T ss_pred HHhccCCCHHHHHHHHHHcCCCcCHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999987643
No 6
>KOG0188|consensus
Probab=100.00 E-value=2.7e-167 Score=1322.50 Aligned_cols=424 Identities=45% Similarity=0.797 Sum_probs=407.2
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVG 80 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG 80 (451)
.|++|||++||+||+++.|++|+||||||.+||||||+|||||||||+|||+ ..+.+|++|+|||||+||||||||+||
T Consensus 2 ~ta~evR~tFldfF~~k~H~~V~SSsViP~dDpTLLFaNAGMNQFKpifLgt-~a~lkRa~NsQKCIRAGGKHNDLdDVG 80 (895)
T KOG0188|consen 2 LTASEVRKTFLDFFKSKHHKIVHSSSVIPFDDPTLLFANAGMNQFKPIFLGT-MAKLKRAANSQKCIRAGGKHNDLDDVG 80 (895)
T ss_pred ccHHHHHHHHHHHHHhcCceEeccCCcccCCCCeeEEeccchhhcchhhhhc-hhhhHhhhhhhhHHhccCCcCChhHhc
Confidence 4889999999999999999999999999999999999999999999999999 567899999999999999999999999
Q ss_pred CCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeC--------CcHHHHHHHHhhcCCCCCceee
Q psy13352 81 YTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYI--------TDDETYNIWTNKIGVPKERVIR 152 (451)
Q Consensus 81 ~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~--------~D~Ea~~iW~~~~Gv~~~rI~~ 152 (451)
+|.+||||||||||||||||||+|||.|||||||++||||++|||||||. +|.||++||++ +|||++||++
T Consensus 81 kD~yHhTfFEMlGNWSFGdYfK~Eac~~AwelLt~vygi~~dRLYVtYF~Gde~~Gl~~D~E~r~iW~~-~Gvp~srILp 159 (895)
T KOG0188|consen 81 KDFYHHTFFEMLGNWSFGDYFKEEACAWAWELLTFVYGIPTDRLYVTYFGGDEKLGLEPDLECREIWNE-LGVPDSRILP 159 (895)
T ss_pred hhccccCchhhcCCCCcchHHHHHHHHHHHHHHHHhhcCCCceEEEEEecCccccCCCCCcHHHHHHHH-cCCChhhccC
Confidence 99999999999999999999999999999999999999999999999996 58999999999 7999999999
Q ss_pred cCCCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCC--CCCCCCceeEEeeeccccccccCCCCCCCcccc
Q psy13352 153 IGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGS--KENFGNRYIEIWNNVFMQFNKEINPKTGSIKLT 230 (451)
Q Consensus 153 ~g~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~--~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~ 230 (451)
+|.+ ||||+||+||||||||||||||- ||+..+ .+.|++.++||||||||||||++| | +|.
T Consensus 160 ~~~k--------DNFWEMGdtGPCGPCtEIHyDri----G~r~a~~LVN~ddp~v~EiWNlVFiq~NRe~d---G--sL~ 222 (895)
T KOG0188|consen 160 FGMK--------DNFWEMGDTGPCGPCTEIHYDRI----GGRDAVKLVNHDDPDVLEIWNIVFIQYNREAD---G--SLK 222 (895)
T ss_pred Cccc--------cchhhhcCCCCCCcchhhhhhhh----cCcchHHHhcCCCcCceeeeeeeeeeeccccC---C--ccc
Confidence 9999 99999999999999999999994 555544 578999999999999999999999 9 999
Q ss_pred cCCCCccccCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCC------CCCcceEEeechhhhhhhhhhcCcccC
Q psy13352 231 KLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNN------LKNNSLKVIADHIRACVFLIIDGVFPG 304 (451)
Q Consensus 231 ~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~------~~~~a~rvIaDH~Ra~~f~IaDGv~Ps 304 (451)
|||+||||||||||||++|||++.||||||+|.||+++|++.++++| ..|+||||+|||+||++++||||.+|+
T Consensus 223 pLp~khIDTGMGfERLvsVlQnk~SNYDTDlFtPif~aiq~~~~~~YtG~d~d~~D~AyRVvADH~RtlTvalsDG~~Pd 302 (895)
T KOG0188|consen 223 PLPKKHIDTGMGFERLVSVLQNKTSNYDTDLFTPIFEAIQEGTGARYTGEDADGIDTAYRVVADHARTLTVALSDGGVPD 302 (895)
T ss_pred cCcccccccccCHHHHHHHHhcccccccchhhHHHHHHHHHhcCCCccCCccccchhhHHHHHHHhhhhheeeecCCCCC
Confidence 99999999999999999999999999999999999999999999874 468999999999999999999999999
Q ss_pred CCCCchHHHHHHHHHHHHHH-HhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13352 305 NEGRGYVLRRIIRRAIRYGY-KLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENI 383 (451)
Q Consensus 305 N~GrGYvlRrilRRa~r~~~-~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~ 383 (451)
|+|||||||||||||+|+++ +||++..||.+|||+|++.|+++||||+.+...|.++|.+||+.|++||++|.++|++.
T Consensus 303 n~GrgyvLRRILRRavrya~e~l~~~~g~~~~LVpvvv~~lgd~fPEl~~~~~~v~diineEE~~F~ktl~rg~~~f~r~ 382 (895)
T KOG0188|consen 303 NTGRGYVLRRILRRAVRYAHEKLNAPPGFFSTLVPVVVETLGDAFPELKRDPQHVIDIINEEEAQFLKTLDRGRKLFDRV 382 (895)
T ss_pred CCCChhHHHHHHHHHHHHHHHHhCCCcchhhhhhHHHHHHHhhhchhhhcCHHHHHHHhcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999997 79999999999999999999999999999999999999999999999999999999999
Q ss_pred Hhc--CCCCCChHHHHHHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhcccC
Q psy13352 384 LLT--KPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSKF 443 (451)
Q Consensus 384 l~~--~~~~l~g~~af~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~~~~ 443 (451)
+.. ++++|||+++|.||||||||+|||++||+|+|+.||+++|+++.++.+++|+.+++.
T Consensus 383 ~~~~~~s~tipGd~~w~LydTyGfPvdlt~lmAee~gl~iD~~~fE~ar~~A~~~Sk~~~~~ 444 (895)
T KOG0188|consen 383 ARELGSSKTIPGDVAWRLYDTYGFPVDLTELMAEEKGLKIDETGFEAARQEAQEKSKGAGGG 444 (895)
T ss_pred HHhcCCCCcCchHHHHHHHhhcCCcHHHHHHHHHHhCCccCchhHHHHHHHHHHHHhccCCC
Confidence 988 457999999999999999999999999999999999999999999999999877543
No 7
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=100.00 E-value=4e-166 Score=1322.43 Aligned_cols=426 Identities=54% Similarity=0.896 Sum_probs=381.5
Q ss_pred HHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCC-CCCCCCCcccccccccCCCCCCCCCCCCCC
Q psy13352 5 EICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIE-KRNYLRATSIQRCLRAGGKHNDLENVGYTN 83 (451)
Q Consensus 5 eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~-~p~~~r~~~~QkCiR~gGkhnDldnVG~t~ 83 (451)
|||++||+||++|||++||||||||+||||||||||||+||||||+|.+ +||++|+|+||||||+|||||||||||+|+
T Consensus 1 eiR~~fl~fF~~~gH~~v~s~~lvp~~d~~llf~~Agm~~fkp~f~g~~~~p~~~r~~~~Q~CiR~~GkhnDld~VG~t~ 80 (552)
T PF01411_consen 1 EIREKFLDFFEKKGHTIVPSSSLVPRWDPTLLFTNAGMNQFKPYFLGGEVPPPANRLVSSQKCIRTGGKHNDLDNVGRTG 80 (552)
T ss_dssp HHHHHHHHHHHTTT-EEE----SS-TT-TTBSS--SGGGGGCCCCTTSSS--SSSCEEEEEEEE-EETTEECGGGTTTSS
T ss_pred CHHHHHHHHHHHCCCEEeccCCcccCCCCCceeeHhhHHHHHHHhcCCCCCCCCCcccccceeeccCCCcchhhhcCCCc
Confidence 7999999999999999999999999999999999999999999999999 999999999999999999999999999999
Q ss_pred CchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCCCCC
Q psy13352 84 YHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYT 163 (451)
Q Consensus 84 rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~~~~ 163 (451)
|||||||||||||||||||+|||+|||||||++|||||+|||||||..|+||++||+++.|+|++||+++|.+
T Consensus 81 rH~T~FEMlGn~sfgdYfK~eai~~awe~lt~~l~i~~~~l~vt~~~~d~ea~~~w~~~~g~~~~~i~~~~~~------- 153 (552)
T PF01411_consen 81 RHHTFFEMLGNFSFGDYFKEEAIEYAWEFLTEVLGIPPDRLYVTVFEWDGEAGEIWEKIVGGPEERILVFGKK------- 153 (552)
T ss_dssp S--SEEEEEEEEEECSS-HHHHHHHHHHHHHCTTT--GGGEEEEEECCECCCCCCCCECCTTECCCEEEE-CC-------
T ss_pred eEeeehhhccccccccccHHHHHHHHHHHHHhhcCCChHhEEEEEeCCchhHHHHHHHhcCCCHHHeEecCCC-------
Confidence 9999999999999999999999999999999999999999999999999999999999889999999999999
Q ss_pred CCCcccCCCCCCCCCceeEEEecCCCCCCC-CCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccccCch
Q psy13352 164 SDNFWQMSDTGPCGPCSEIFYDCGSTFHGN-PPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMG 242 (451)
Q Consensus 164 ~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~-~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~IDTGmG 242 (451)
+|||+||++||||||||||||+|++++++ +.+.++++|+||+||||+|||||+++++ | ++.|||+++||||||
T Consensus 154 -~nfw~~g~~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~~~~eiwn~vf~q~~~~~~---g--~~~~L~~~~idtGmg 227 (552)
T PF01411_consen 154 -DNFWEMGDTGPCGPCSEIFYDRGEERGCWDSQGTPTCDDDRFLEIWNLVFMQYNRDED---G--SLEPLPKKNIDTGMG 227 (552)
T ss_dssp -EEEEESSTSEEEEEEEEEEEEEECCCHHHHHHSTSSHHHHHECCCCCCCCCEEEETTT---S--HCCCCCCCCCCCCEE
T ss_pred -CceEECCCCCCCCCCEEEEECCCcccCccccccccccccccHHHHHHHHHHHhccccc---c--ccccccchhhhcCCC
Confidence 99999999999999999999999987543 3456788999999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCC----CCCcceEEeechhhhhhhhhhcCcccCCCCCchHHHHHHHH
Q psy13352 243 LERLASILQNVYNNYETDLFKTLIKAAARETNCNN----LKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRR 318 (451)
Q Consensus 243 LERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~----~~~~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRR 318 (451)
|||++++|||++|||+||+|.|+++.+++++++++ ..+.++||||||+||++|||+|||+|||+||||||||||||
T Consensus 228 ler~~~~lq~~~s~~~tdlf~~i~~~i~~~~~~~y~~~~~~~~a~rvIaDH~Ra~~f~i~DGv~PsN~GrGYvlRriiRR 307 (552)
T PF01411_consen 228 LERLAAVLQGVRSNYDTDLFMPIIEAIEELSGVPYKDEEEIDVALRVIADHIRALTFAIADGVLPSNEGRGYVLRRIIRR 307 (552)
T ss_dssp HHHHCHHHCCHCCHHHCHHTCHHHHHHHHHHC--TTSSCCCHHHHHHHHHHHHHHHHHHHTT--SSSSHHHHHHHHHHHH
T ss_pred cHHHHHHHhhhhhhhchhhhhhHHHHHHHHcCCCcccccccccEEEEEcchhhceeeEecCCeeecccCCcchHHHHHHH
Confidence 99999999999999999999999999999999653 56789999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCChHHH
Q psy13352 319 AIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLT--KPDKLDGKLA 396 (451)
Q Consensus 319 a~r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~--~~~~l~g~~a 396 (451)
|+|++++||++.+||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++ +++.|||++|
T Consensus 308 a~r~~~~lg~~~~fl~~lv~~vi~~~~~~ypel~~~~~~I~~ii~~EE~~F~~TL~~G~~~l~~~i~~~~~~~~lsge~a 387 (552)
T PF01411_consen 308 AVRFGRKLGIEEPFLYELVPVVIESMGDFYPELKENKDYIKDIIKEEEERFLKTLERGLKLLEKLIKKLKKKKELSGEDA 387 (552)
T ss_dssp HHHHHHHTT-SS--HHHHHHHHHHHHTTTGTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSEE-HHHH
T ss_pred HHHHHHHhCCCccchHHHHHHHHHHhhccChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCChHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 4678999999
Q ss_pred HHHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhcccC
Q psy13352 397 FILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSKF 443 (451)
Q Consensus 397 f~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~~~~ 443 (451)
|+||||||||+|||++||+|+|++||+++|+++|++||++||++++.
T Consensus 388 F~LYDTyGfP~Dlt~eia~e~gl~vD~~~f~~~m~~qr~~sr~~~~~ 434 (552)
T PF01411_consen 388 FKLYDTYGFPLDLTEEIAEEKGLSVDEEGFEYAMEEQRERSRAAKKK 434 (552)
T ss_dssp HHHHHHH---HHHHHHHHHTTT-EE-HHCCHHHHHHHCHHHCCHH--
T ss_pred eeehhccCCCHHHHHHHHHHhceeecHHHHHHHHHHHHHHhhhcccc
Confidence 99999999999999999999999999999999999999999987543
No 8
>TIGR03683 A-tRNA_syn_arch alanyl-tRNA synthetase. This family of alanyl-tRNA synthetases is limited to the archaea, and is a subset of those sequences identified by the model pfam07973 covering the second additional domain (SAD) of alanyl and threonyl tRNA synthetases.
Probab=100.00 E-value=1e-142 Score=1190.75 Aligned_cols=369 Identities=29% Similarity=0.488 Sum_probs=354.2
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccc-CCCCCCCCCCcccccccccCCCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFL-GIEKRNYLRATSIQRCLRAGGKHNDLENV 79 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~fl-G~~~p~~~r~~~~QkCiR~gGkhnDldnV 79 (451)
||++|||++||+||+++||++||||||||+||++||||||||+||||+|+ |.++||++|+|+||||||+ ||||||
T Consensus 56 ~~~~eiR~~fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~~r~~~sQkCiR~----nDldnV 131 (902)
T TIGR03683 56 YTLDEMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPANPLVISQPCIRL----NDIDNV 131 (902)
T ss_pred CCHHHHHHHHHHHHHhCCCEEeCCcCcCcCCCCCeeEeecchhhhhHhhcCCCCCCCCCCceeccccccc----cccccc
Confidence 78999999999999999999999999999999999999999999999998 9999999999999999999 999999
Q ss_pred CCCCCchhhhhhhcccccc-----ccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecC
Q psy13352 80 GYTNYHHTFFQMLGNWSFG-----DYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIG 154 (451)
Q Consensus 80 G~t~rHhTfFEMLGNfSFG-----dYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g 154 (451)
|+|+||||||||||||||| ||||+|||+|||||| ++||||++||+.
T Consensus 132 G~t~rH~TfFEMlGn~sFg~~~~~dYfK~EaI~~a~e~l-~~lgi~~~~i~~---------------------------- 182 (902)
T TIGR03683 132 GRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL-EELGIDPEEITY---------------------------- 182 (902)
T ss_pred cCCCCcchhhhhccceeeCCCCcccCcHHHHHHHHHHHH-HHcCCCHHHeee----------------------------
Confidence 9999999999999999999 999999999999999 999999999852
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccC-------CCCCCCc
Q psy13352 155 DKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEI-------NPKTGSI 227 (451)
Q Consensus 155 ~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~-------d~~~G~~ 227 (451)
+ ||||+|| ||||||||||| + | |||||||||||+|++ + |
T Consensus 183 -~--------enfW~~G--GpcGPcsEi~~-~------g------------lEiwnlVFmq~~~~~~~~~~~~~---g-- 227 (902)
T TIGR03683 183 -K--------ESPWEGG--GNAGPCFEVIV-G------G------------LELATLVFMQYEEDKEGEIEIKG---G-- 227 (902)
T ss_pred -c--------CCccCCC--CCCCCceeeee-C------c------------EeeeeeeeeeeccccccccccCC---C--
Confidence 2 9999999 99999999999 3 2 999999999999988 7 8
Q ss_pred ccccCCCCccccCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCC-------------------C---------
Q psy13352 228 KLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNL-------------------K--------- 279 (451)
Q Consensus 228 ~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~-------------------~--------- 279 (451)
+|+|||+||||||||||||+|||||+|||||| +|.|||++|++++|+.+. .
T Consensus 228 ~~~~Lp~k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 306 (902)
T TIGR03683 228 RYSEMPLKIVDTGYGLERFVWASQGTPTAYDA-IFPEIVDKLKENAGVELIDEEILAENARLAGMMDIEDEEDLRELRKK 306 (902)
T ss_pred eeeeCCCCceecCCCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhccccCccccchhhHHhhh
Confidence 99999999999999999999999999999999 999999999999997521 0
Q ss_pred -------------C-----cceEEeechhhhhhhhhhcCcccCCCCCchHHHHHHHHHHHHHHHhCCCCchhhhhHHHHH
Q psy13352 280 -------------N-----NSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLI 341 (451)
Q Consensus 280 -------------~-----~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~Lv~~vi 341 (451)
+ .++||||||+||++|||+|||+|||+|||||||||||||+|++++||++.| |++||++|+
T Consensus 307 ~a~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~~~lg~~~~-l~~lv~~~~ 385 (902)
T TIGR03683 307 VADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKEGYLARLVIRRTLRLMRELGLDIP-LSDLVEMQL 385 (902)
T ss_pred hhhhcccchhhhhhhccccceEEEEcchHHHHHHHHhcCCccCCCCcchHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHH
Confidence 1 589999999999999999999999999999999999999999999999999 999999999
Q ss_pred HHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHhcCCCCHHhHHHHHHHcCCcc
Q psy13352 342 FNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSF 421 (451)
Q Consensus 342 ~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~~~~~l~g~~af~LydtyGfP~dlt~eia~e~gi~v 421 (451)
+.|++.||||.++++.|++||+.||++|.+||++|+++|++++++ ++.|||++||+||||||||+|||++||+|+|++|
T Consensus 386 ~~~~~~ypel~~~~~~I~~ii~~Ee~~f~~Tl~~G~~~~~~~~~~-~~~i~g~~~f~LyDTyGfP~dl~~eia~e~g~~v 464 (902)
T TIGR03683 386 EELKKIYPELKENKDYILDILDLEEEKYRETLERGRRIVERLLKT-KKEIPLDDLIELYDSHGIPPEIVKEIAAELGAEV 464 (902)
T ss_pred HHHhhhChhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCcCCHHHHHHHHHccCCCHHHHHHHHHHcCCcc
Confidence 999999999999999999999999999999999999999999986 3579999999999999999999999999999999
Q ss_pred CHh-hHHHHHHHHHHHHhhc
Q psy13352 422 NKN-DFILEMEKQRNNARLN 440 (451)
Q Consensus 422 d~~-~f~~~~~~qr~~sr~~ 440 (451)
|++ +|+++|++|+++||++
T Consensus 465 d~~~~F~~~~~~~~~~~~~~ 484 (902)
T TIGR03683 465 EIPDNFYSIVAERHEKEEKE 484 (902)
T ss_pred cCCccHHHHHHHHHHHHHhc
Confidence 998 9999999999999876
No 9
>PRK13902 alaS alanyl-tRNA synthetase; Provisional
Probab=100.00 E-value=3.8e-142 Score=1186.05 Aligned_cols=369 Identities=30% Similarity=0.506 Sum_probs=354.5
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccc-CCCCCCCCCCcccccccccCCCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFL-GIEKRNYLRATSIQRCLRAGGKHNDLENV 79 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~fl-G~~~p~~~r~~~~QkCiR~gGkhnDldnV 79 (451)
||++|||++||+||++|||++||||||||+|+++||||||||+||||+|+ |.++||++|+|+||||||+ ||||||
T Consensus 59 ~~~~eiR~~Fl~FF~~~gH~~v~s~pvvprw~dDllft~Agm~~Fkp~f~~G~~~pp~~~~~~sQ~CiR~----nDldnV 134 (900)
T PRK13902 59 YTLKEMREKFLSFFEKHGHTRIERYPVVARWRDDVYLTIASIYDFQPWVTSGLVPPPANPLVISQPCIRL----NDIDNV 134 (900)
T ss_pred CCHHHHHHHHHHHHHhCCCEEcCCcCcCCCCCCCeeeeecchhhhhHHhcCCCCCCCCCCceecccccch----hhhhhc
Confidence 78999999999999999999999999999999999999999999999998 9999999999999999999 999999
Q ss_pred CCCCCchhhhhhhcccccc-----ccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecC
Q psy13352 80 GYTNYHHTFFQMLGNWSFG-----DYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIG 154 (451)
Q Consensus 80 G~t~rHhTfFEMLGNfSFG-----dYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g 154 (451)
|+|+||||||||||||||| ||||+|||+|||||||++|||||+||+.
T Consensus 135 G~t~rH~T~FEMlGn~sFg~~~~~~YfK~eaI~~a~e~lt~~lgi~~~~I~~---------------------------- 186 (900)
T PRK13902 135 GRTGRHLTSFEMMAHHAFNYPDKEVYWKDETVEYCFEFFTKELGIDPEEITF---------------------------- 186 (900)
T ss_pred cccCCchhhhhhccceeeCCCCcccccHHHHHHHHHHHHHhhcCCCHHHeee----------------------------
Confidence 9999999999999999999 9999999999999999999999988752
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCC
Q psy13352 155 DKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPK 234 (451)
Q Consensus 155 ~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~ 234 (451)
+ ||||+|| ||||||||||| + | |||||||||||+++ + | +|+|||+
T Consensus 187 -~--------enfW~~G--GpcGPcsEi~~-~------g------------lEiwnlVFmqy~~~-~---g--~~~~Lp~ 230 (900)
T PRK13902 187 -K--------ESWWEGG--GNAGPCFEVLV-R------G------------LELATLVFMQYKKD-G---N--RYVEMPL 230 (900)
T ss_pred -c--------ccccCCC--CCCCCceeeee-C------C------------EEeeeeeeeEEEcC-C---C--eeeeCCC
Confidence 2 9999999 99999999999 3 2 99999999999998 6 8 9999999
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCCC---------------------------C-------
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLK---------------------------N------- 280 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~~---------------------------~------- 280 (451)
|+|||||||||||||+||++||||| +|.|||+.+++++|+++.. +
T Consensus 231 k~VDTG~GLER~~~v~qg~~t~ydt-~f~~ii~~i~~~~g~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~ 309 (900)
T PRK13902 231 KIVDTGYGLERIAWASQGTPTAYDA-IFGELVDKLKENAGVEEPDEEILAEAARLAGLMDIEEIEDLRSLRQKVAKKLGI 309 (900)
T ss_pred CeeeCCcCHHHHHHHHcCCCchHHH-HHHHHHHHHHHHhCCCcccchhhhhhhhhcccCCcccchhHHHHHHHHHhhccc
Confidence 9999999999999999999999999 9999999999999975310 1
Q ss_pred ------------cceEEeechhhhhhhhhhcCcccCCCCCchHHHHHHHHHHHHHHHhCCCCchhhhhHHHHHHHhhhhC
Q psy13352 281 ------------NSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIY 348 (451)
Q Consensus 281 ------------~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~y 348 (451)
.++||||||+||++|||+||++|||+|||||||||||||+|++++||++.| |++||++|++.|++.|
T Consensus 310 ~~~~~~~~~~~~~~~~vIaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~~~lg~~~~-l~~lv~~~~~~~~~~y 388 (900)
T PRK13902 310 DVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGEGYLARLVIRRTLRLLDELGLDVP-LSELVDMQIDELKEDY 388 (900)
T ss_pred chhhhhhhccccceEEEEecHHHHHHHHHhCCCcCCCCCcchHHHHHHHHHHHHHHHhCCCcc-HHHHHHHHHHHHhhhC
Confidence 689999999999999999999999999999999999999999999999999 9999999999999999
Q ss_pred hhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHhcCCCCHHhHHHHHHHcCCccCH-hhHH
Q psy13352 349 KELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNK-NDFI 427 (451)
Q Consensus 349 peL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~~~~~l~g~~af~LydtyGfP~dlt~eia~e~gi~vd~-~~f~ 427 (451)
|||.++++.|++||..||++|.+||++|.++|++++++. +.|||++||+||||||||+|||++||+|+|++||+ ++|+
T Consensus 389 pel~~~~~~I~~ii~~Ee~~f~~tl~~G~~~~~~~~~~~-~~l~g~~~f~LYDt~G~P~dl~~eia~e~g~~vd~p~~F~ 467 (900)
T PRK13902 389 PELKENRDYILDIVDLEEEKYRETLERGKRIVERLAKKK-EEIPLDDLIELYDSHGIPPEIVKEIAKKKGVEVEVPDNFY 467 (900)
T ss_pred hhHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCHHHHhhhhhcCCCCHHHHHHHHHHcCCccCchhhHH
Confidence 999999999999999999999999999999999999874 57999999999999999999999999999999999 8999
Q ss_pred HHHHHHHHHHhhc
Q psy13352 428 LEMEKQRNNARLN 440 (451)
Q Consensus 428 ~~~~~qr~~sr~~ 440 (451)
++|++|+++|+++
T Consensus 468 ~~~~~~~~~~~~~ 480 (900)
T PRK13902 468 SLVAERHEKAEEE 480 (900)
T ss_pred HHHHHHHHHHhhc
Confidence 9999999999875
No 10
>cd00673 AlaRS_core Alanyl-tRNA synthetase (AlaRS) class II core catalytic domain. AlaRS is a homodimer. It is responsible for the attachment of alanine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its predicted structure and the presence of three characteristic sequence motifs.
Probab=100.00 E-value=7.8e-115 Score=833.46 Aligned_cols=232 Identities=55% Similarity=0.973 Sum_probs=224.9
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCCCC
Q psy13352 3 SIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYT 82 (451)
Q Consensus 3 ~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG~t 82 (451)
++|||++||+||++|||+++|||||||++|||||||||||+||||||+|+++||++|+|++|||||+ |||||||+|
T Consensus 1 ~~eiR~~fl~FF~~kgH~~v~s~slvp~dDptllFtnAGM~~Fkp~f~G~~~p~~~r~~~~QkCiR~----~DienVG~t 76 (232)
T cd00673 1 ASEIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQKCIRA----GDIDNVGKT 76 (232)
T ss_pred ChHHHHHHHHHHHhCCCEEeCCCCcCCCCCCchheeccchhhhhHHhcCCCCCCCCceeeeeeceec----CChhhcccc
Confidence 4799999999999999999999999999999999999999999999999999999999999999999 999999999
Q ss_pred CCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCCCC
Q psy13352 83 NYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLY 162 (451)
Q Consensus 83 ~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~~~ 162 (451)
+|||||||||||||||||||+|||+|||||||++|||||+|||||||++||||++||.+.+|||++||++++.+
T Consensus 77 ~rHhTfFEMLGNfSFgdYFK~eaI~~awe~LT~~l~l~~~rl~vTv~~~dde~~~~w~~~~g~~~~~i~~~~~~------ 150 (232)
T cd00673 77 GRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRLYVSVFEGDDEEEAIWWWKIGLPGIRIERIGFK------ 150 (232)
T ss_pred ccchhhhhhhcccchhhhhHHHHHHHHHHHHHhhcCCCccceEEEEeCCCHHHHHHHHHhhCCCHHHeeeCCcc------
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccccCch
Q psy13352 163 TSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMG 242 (451)
Q Consensus 163 ~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~IDTGmG 242 (451)
||||+||++||||||||||||+|+.+++. ..++++|+|||||||||||||+|.++ | +|.|||+|+||||||
T Consensus 151 --dNfW~~G~~GPCGPcsEI~yd~g~~~~~~--~~~~~~~~r~lEIWNlVFmqy~r~~~---g--~l~pLp~k~IDTGmG 221 (232)
T cd00673 151 --DNFWEMGGNGPCGPCSEIFYDRGEERDAA--SLPNEDDDRYLEIWNLVFMQYNRDAD---G--TYRPLPKKIVDTGMG 221 (232)
T ss_pred --CCCCCCCCCcCCCCCEEEEEccCCCcCcc--ccccCCCCCEEEEeeeeeeeeeccCC---C--CCccCCCCeeeCCcC
Confidence 99999999999999999999999886442 36778999999999999999999999 9 999999999999999
Q ss_pred HHHHHHHHhcC
Q psy13352 243 LERLASILQNV 253 (451)
Q Consensus 243 LERl~~vlQg~ 253 (451)
||||||||||+
T Consensus 222 lERla~vlQg~ 232 (232)
T cd00673 222 LERLVWVLQGV 232 (232)
T ss_pred HHHHHHHHcCC
Confidence 99999999996
No 11
>TIGR00388 glyQ glycyl-tRNA synthetase, tetrameric type, alpha subunit. This tetrameric form of glycyl-tRNA synthetase (2 alpha, 2 beta) is found in the majority of completed eubacterial genomes, with the two genes fused in a few species. A substantially different homodimeric form (not recognized by this model) replaces this form in the Archaea, animals, yeasts, and some eubacteria.
Probab=97.00 E-value=0.0071 Score=60.58 Aligned_cols=173 Identities=24% Similarity=0.328 Sum_probs=105.2
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-ccCCCCCCCCCCcccccccccCCCCCCC---
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDV-FLGIEKRNYLRATSIQRCLRAGGKHNDL--- 76 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~gGkhnDl--- 76 (451)
|+-++|-.+--+|..++|..++.++.+ . -|--.|-|. |+..--|..-+++=+|+|.|. .|=
T Consensus 1 m~fQ~iI~~Lq~fWa~~GC~i~QPyD~-E----------vGAGT~hPaTflralgpepw~vAYVqPsRRP----~DGRYG 65 (293)
T TIGR00388 1 QTFQGLILKLQEYWANQGCLIVQPYDM-E----------KGAGTMHPMTFLRSLGPEPWAVAYVEPSRRP----TDGRYG 65 (293)
T ss_pred CCHHHHHHHHHHHHHHCCCEEEcCccc-c----------cccccCCHHHHHHhcCCCcceeccccCCCCC----CCCCCC
Confidence 788899999999999999999988874 2 234478885 665555555689999999998 441
Q ss_pred CCCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCC
Q psy13352 77 ENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDK 156 (451)
Q Consensus 77 dnVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~ 156 (451)
+|--+ -.||.=|..+=--|-.+- .+.=.+-| +.+||++. +|=+||-.
T Consensus 66 eNPNR-Lq~yyQfQVilKPsP~ni-----QelYL~SL-~~lGid~~-------------------------~hDIRFVE- 112 (293)
T TIGR00388 66 ENPNR-LQHYYQFQVVIKPSPDNI-----QELYLDSL-RALGIDPT-------------------------EHDIRFVE- 112 (293)
T ss_pred CCchh-hhheeeeEEEECCCCccH-----HHHHHHHH-HHhCCCcc-------------------------ccCeeEee-
Confidence 22222 234444554444444331 11111111 23455543 33355532
Q ss_pred CCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCc
Q psy13352 157 KNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYC 236 (451)
Q Consensus 157 ~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~ 236 (451)
|| |+-=.-|--|===|+.-| | +||=-.-+ |.+ .. | +.+.| -.
T Consensus 113 --------Dn-WEsPTLGAwGlGWEVWld-------G------------MEITQFTY--FQQ-vG---G-i~~~p---v~ 154 (293)
T TIGR00388 113 --------DN-WENPTLGAWGLGWEVWLD-------G------------MEVTQFTY--FQQ-VG---G-LECKP---VS 154 (293)
T ss_pred --------cC-CCCCcccccccccEEEEC-------C------------eeeeeeee--eee-eC---C-eeccc---cc
Confidence 44 643223566655666653 2 77754332 333 22 3 23433 44
Q ss_pred cccCchHHHHHHHHhcCCCccch
Q psy13352 237 VDTGMGLERLASILQNVYNNYET 259 (451)
Q Consensus 237 IDTGmGLERl~~vlQg~~snYdt 259 (451)
+.-=+||||||+.|||+.|+||.
T Consensus 155 ~EITYGLERiaMylQ~vd~v~dl 177 (293)
T TIGR00388 155 VEITYGLERLAMYIQGVENVYDL 177 (293)
T ss_pred eeeehhHHHHHHHHhCCCeeeee
Confidence 66779999999999999999987
No 12
>PRK09348 glyQ glycyl-tRNA synthetase subunit alpha; Validated
Probab=96.58 E-value=0.036 Score=55.46 Aligned_cols=173 Identities=25% Similarity=0.324 Sum_probs=106.0
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-ccCCCCCCCCCCcccccccccCCCCCCC---
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDV-FLGIEKRNYLRATSIQRCLRAGGKHNDL--- 76 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~gGkhnDl--- 76 (451)
|+-++|-.+--+|..++|..++.++.+= -|--.|-|. |+..--|..-+++=+|+|.|. .|=
T Consensus 4 ~~fQ~iI~~Lq~fWa~~GC~i~qPyD~E-----------vGAGT~~P~Tflr~Lgpepw~vaYvqPsRRP----~DGRYG 68 (283)
T PRK09348 4 MTFQDIILTLQDYWADQGCVILQPYDME-----------VGAGTFHPATFLRALGPEPWNAAYVQPSRRP----TDGRYG 68 (283)
T ss_pred CcHHHHHHHHHHHHHHCCCEEECCcccc-----------cccccCCHHHHHHhcCCCccccccccCCCCC----CCCCcC
Confidence 6788999999999999999999888742 234478885 665555555689999999998 441
Q ss_pred CCCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCC
Q psy13352 77 ENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDK 156 (451)
Q Consensus 77 dnVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~ 156 (451)
+|--+ -.||.=|..+=--|-.+- .+.=.+-| +.+||||. +|=+||-.
T Consensus 69 eNPNR-Lq~y~QfQVilKPsP~ni-----QelYL~SL-~~lGid~~-------------------------~hDIRFVE- 115 (283)
T PRK09348 69 ENPNR-LQHYYQFQVILKPSPDNI-----QELYLGSL-EALGIDPL-------------------------EHDIRFVE- 115 (283)
T ss_pred CCchh-hhhheeeEEEEcCCCccH-----HHHHHHHH-HHhCCCcc-------------------------ccceeEee-
Confidence 12221 235555555444444331 11111112 24555554 23355532
Q ss_pred CCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCc
Q psy13352 157 KNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYC 236 (451)
Q Consensus 157 ~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~ 236 (451)
|| |+-=.-|--|===|+.-| | +||=-.-+ |.+ -. | .++....
T Consensus 116 --------Dn-WEsPTLGAwGlGWEVWld-------G------------MEITQFTY--FQQ-vG---G----i~~~pv~ 157 (283)
T PRK09348 116 --------DN-WESPTLGAWGLGWEVWLD-------G------------MEVTQFTY--FQQ-VG---G----IECKPVT 157 (283)
T ss_pred --------cC-CCCCcccccccceEEEEC-------C------------eeeeeeee--eee-eC---C----eeccccc
Confidence 44 643223566655666653 2 77764333 233 22 3 3344455
Q ss_pred cccCchHHHHHHHHhcCCCccch
Q psy13352 237 VDTGMGLERLASILQNVYNNYET 259 (451)
Q Consensus 237 IDTGmGLERl~~vlQg~~snYdt 259 (451)
+.-=+||||||+.|||+.|+||.
T Consensus 158 ~EITYGLERiamylQ~vd~v~dl 180 (283)
T PRK09348 158 GEITYGLERLAMYLQGVDNVYDL 180 (283)
T ss_pred eeeehhHHHHHHHHhCCCceeee
Confidence 67789999999999999999987
No 13
>cd00733 GlyRS_alpha_core Class II Glycyl-tRNA synthetase (GlyRS) alpha subunit core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes and in arabidopsis. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. This alignment contains only sequences from the GlyRS form which heterotetramerizes. The homodimer form of GlyRS is in a different family of class II aaRS. Class II assignment is based upon structure and the presence of three characteristic sequence motifs.
Probab=96.33 E-value=0.045 Score=54.66 Aligned_cols=171 Identities=26% Similarity=0.354 Sum_probs=103.0
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-ccCCCCCCCCCCcccccccccCCCCCCC---CC
Q psy13352 3 SIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDV-FLGIEKRNYLRATSIQRCLRAGGKHNDL---EN 78 (451)
Q Consensus 3 ~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~gGkhnDl---dn 78 (451)
-++|-.+--+|..++|..++.++.+ . .|--.|-|. |+..--|..-+++=+|+|.|. .|= +|
T Consensus 2 fQ~iI~~Lq~fW~~~GC~i~qPyD~-E----------vGAGT~hPaTflr~Lgpepw~vAYVqPsrRP----~DGRYGeN 66 (279)
T cd00733 2 FQDLILKLQKFWASQGCLIIQPYDM-E----------VGAGTFHPATFLRALGPEPWNVAYVEPSRRP----TDGRYGEN 66 (279)
T ss_pred HHHHHHHHHHHHHHCCCEEEcCccc-c----------cccccCCHHHHHHhcCCCcceeccccCCCCC----CCCCcCCC
Confidence 4678888889999999999988874 2 234478885 665555655689999999998 441 12
Q ss_pred CCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCC
Q psy13352 79 VGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKN 158 (451)
Q Consensus 79 VG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~ 158 (451)
--+ -.||.=|..+=--|-.+- .+.=.+-| +.+||++. +|=+||-.
T Consensus 67 PNR-Lq~y~QfQViiKPsP~ni-----QelYL~SL-~~lGid~~-------------------------~hDIRFVE--- 111 (279)
T cd00733 67 PNR-LQHYYQFQVIIKPSPDNI-----QELYLESL-EALGINPK-------------------------EHDIRFVE--- 111 (279)
T ss_pred chh-hhhheeeEEEECCCCccH-----HHHHHHHH-HHhCCCcc-------------------------ccCeeEee---
Confidence 221 235554554444444321 11111112 23455543 33355532
Q ss_pred CCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccc
Q psy13352 159 SPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVD 238 (451)
Q Consensus 159 ~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~ID 238 (451)
|| |+-=.-|--|===|+.-| | +||=-.-+ |.+ .. | .++....+.
T Consensus 112 ------Dn-WEsPTLGAwGLGWEVWld-------G------------MEITQFTY--FQQ-vG---G----i~~~pv~~E 155 (279)
T cd00733 112 ------DN-WESPTLGAWGLGWEVWLD-------G------------MEVTQFTY--FQQ-VG---G----IPCKPISVE 155 (279)
T ss_pred ------cC-CCCCcccccccccEEEEC-------C------------eeeeeeee--eee-eC---C----eecccccee
Confidence 44 643323666656677663 2 78764333 333 23 3 334445566
Q ss_pred cCchHHHHHHHHhcCCCccch
Q psy13352 239 TGMGLERLASILQNVYNNYET 259 (451)
Q Consensus 239 TGmGLERl~~vlQg~~snYdt 259 (451)
-=+||||||+.|||+.|+||.
T Consensus 156 iTYGLERiamylQ~vd~v~dl 176 (279)
T cd00733 156 ITYGLERIAMYLQGVDNVYDI 176 (279)
T ss_pred eehhHHHHHHHHhCCCceecc
Confidence 779999999999999999987
No 14
>cd00768 class_II_aaRS-like_core Class II tRNA amino-acyl synthetase-like catalytic core domain. Class II amino acyl-tRNA synthetases (aaRS) share a common fold and generally attach an amino acid to the 3' OH of ribose of the appropriate tRNA. PheRS is an exception in that it attaches the amino acid at the 2'-OH group, like class I aaRSs. These enzymes are usually homodimers. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. The substrate specificity of this reaction is further determined by additional domains. Intererestingly, this domain is also found is asparagine synthase A (AsnA), in the accessory subunit of mitochondrial polymerase gamma and in the bacterial ATP phosphoribosyltransferase regulatory subunit HisZ.
Probab=96.08 E-value=0.026 Score=51.92 Aligned_cols=109 Identities=21% Similarity=0.199 Sum_probs=66.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCC--------ccccc---ccccccccccc-CCC-------CCCCCCCcccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSS--------LLFTN---SGMVQFKDVFL-GIE-------KRNYLRATSIQ 64 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dpt--------llFtn---AGM~qFkp~fl-G~~-------~p~~~r~~~~Q 64 (451)
+.+.+.+-++|.+.|+..|-++++++..+-. +...| ..+..++|-.+ +.. ....-|+...+
T Consensus 3 ~~~~~~~r~~l~~~Gf~Ev~t~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~LR~s~~~~l~~~~~~n~~~~~~~lfeig 82 (211)
T cd00768 3 SKIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGLVRLFVSHIRKLPLRLAEIG 82 (211)
T ss_pred HHHHHHHHHHHHHcCCEEeEcceecHHHHHHHcCccHhheeeeecCCCCEEEECCCCcHHHHHHHHhhcccCCEEEEEEc
Confidence 5678889999999999999999988742110 11111 01111222111 000 00123677889
Q ss_pred cccccCCCCCCCCCCCCCCCchhhhhhhccccccccc-----hHHHHHHHHHHhhhhcCCC
Q psy13352 65 RCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYF-----KYESLQWTWELLTQIYGLS 120 (451)
Q Consensus 65 kCiR~gGkhnDldnVG~t~rHhTfFEMLGNfSFGdYf-----K~eaI~~awe~LT~~lgl~ 120 (451)
+|.|. .+ ...+ .+|..-|.|+|-..+|... -.+++..++++|. .+|++
T Consensus 83 ~vfr~----e~-~~~~--~~~~~ef~~l~~~~~g~~~~~~~~~~~~~~~~~~~l~-~lg~~ 135 (211)
T cd00768 83 PAFRN----EG-GRRG--LRRVREFTQLEGEVFGEDGEEASEFEELIELTEELLR-ALGIK 135 (211)
T ss_pred ceeec----CC-Cccc--cccceeEEEcCEEEEcCCchhHHHHHHHHHHHHHHHH-HcCCC
Confidence 99997 22 1111 3677889999999998643 3678888888885 67763
No 15
>COG0752 GlyQ Glycyl-tRNA synthetase, alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=96.03 E-value=0.065 Score=53.47 Aligned_cols=172 Identities=26% Similarity=0.384 Sum_probs=100.4
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-ccCCCCCCCCCCcccccccccCCCCCCC---
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDV-FLGIEKRNYLRATSIQRCLRAGGKHNDL--- 76 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~gGkhnDl--- 76 (451)
||-++|.-+-.+|..++|..++-++-+ + .|--.|-|+ ||..--|..=.++-+|+|-|. .|=
T Consensus 5 ~~fQ~~IltLq~yW~~qGC~i~QpyD~-e----------vGAGT~hPaTfLralGpePw~aAYVqPSRRP----~DGRYG 69 (298)
T COG0752 5 LTFQGLILTLQNYWAEQGCTILQPYDM-E----------VGAGTFHPATFLRALGPEPWNAAYVQPSRRP----TDGRYG 69 (298)
T ss_pred ccHHHHHHHHHHHHHHcCCEEeccccc-c----------cccCcCChHHHHHhcCCCccceeeeccCCCC----CCCCCC
Confidence 466788888899999999999987764 2 234478896 665555554568899999998 341
Q ss_pred CCCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCC-CCCceeecCC
Q psy13352 77 ENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGV-PKERVIRIGD 155 (451)
Q Consensus 77 dnVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv-~~~rI~~~g~ 155 (451)
+|-.+= .||-=|.. +++=+|++|-= .| .+|. +.+|+ |.+|=+||-.
T Consensus 70 enPNRl-q~yyQfQV------------------------ilKPsP~NiQe-LY---L~SL----~~lGid~~~HDIRFVE 116 (298)
T COG0752 70 ENPNRL-QHYYQFQV------------------------IIKPSPDNIQE-LY---LGSL----EALGIDPLEHDIRFVE 116 (298)
T ss_pred CCchhh-hhheeEEE------------------------EecCCCccHHH-HH---HHHH----HHcCCChhhcceeeec
Confidence 111111 12222221 13333333210 00 0111 12455 3345566642
Q ss_pred CCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCC
Q psy13352 156 KKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKY 235 (451)
Q Consensus 156 ~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k 235 (451)
|| |+-=.-|--|-==|+..| | +||=-.-| |.+ .. | +...| -
T Consensus 117 ---------Dn-WE~PTlGawGlGWEVWld-------G------------MEvTQFTY--FQQ-vG---G-iec~p---V 157 (298)
T COG0752 117 ---------DN-WENPTLGAWGLGWEVWLD-------G------------MEVTQFTY--FQQ-VG---G-LECKP---V 157 (298)
T ss_pred ---------cC-CCCCcccccccceeEEEc-------C------------eeeeeeeh--hhh-hC---C-eeccc---e
Confidence 44 654444777766777764 2 67754333 223 22 3 23444 3
Q ss_pred ccccCchHHHHHHHHhcCCCccch
Q psy13352 236 CVDTGMGLERLASILQNVYNNYET 259 (451)
Q Consensus 236 ~IDTGmGLERl~~vlQg~~snYdt 259 (451)
.+.--+||||||+.+||+.++||-
T Consensus 158 ~~EITYGlERlAmYiQ~vdnVydl 181 (298)
T COG0752 158 SGEITYGLERLAMYIQGVDNVYDL 181 (298)
T ss_pred eeeeehhHHHHHHHHhCccceeEE
Confidence 455679999999999999999986
No 16
>PRK14908 glycyl-tRNA synthetase; Provisional
Probab=95.32 E-value=0.16 Score=59.35 Aligned_cols=173 Identities=23% Similarity=0.311 Sum_probs=108.4
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-ccCCCCCCCCCCcccccccccCCCCCCC---
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDV-FLGIEKRNYLRATSIQRCLRAGGKHNDL--- 76 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~gGkhnDl--- 76 (451)
||-+++-.+--+|..++|..++.++.+= -|--.|-|. |+..--|..-+++-+|+|.|. .|=
T Consensus 5 ~~~q~~i~~l~~~w~~~gc~~~qp~~~e-----------~gagt~~p~t~~~~l~~~~~~~ayv~p~~rp----~d~ryg 69 (1000)
T PRK14908 5 LTMQDMLLALLRYWSEQGCIIHQGYDLE-----------VGAGTFNPATFLRVLGPEPWRVAYVEPSRRP----DDGRYG 69 (1000)
T ss_pred ccHHHHHHHHHHHHHHCCCEEECCcccc-----------cccCcCCHHHHHhhcCCCCCcccccCCCCCC----CCCCcC
Confidence 6788999999999999999999888742 234478885 665555555679999999998 441
Q ss_pred CCCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCC
Q psy13352 77 ENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDK 156 (451)
Q Consensus 77 dnVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~ 156 (451)
+|-.+ -.||+=|..+=--|-++- .+.=.+-| +.+|||+.. |=+||-.
T Consensus 70 ~npnr-l~~~~q~qvi~kp~p~~~-----q~~yl~sl-~~~gi~~~~-------------------------~dirfve- 116 (1000)
T PRK14908 70 QNPNR-LQTYTQFQVILKPVPGNP-----QELYLESL-KAIGIDLRD-------------------------HDIRFVH- 116 (1000)
T ss_pred CCchh-hhhheeeEEEECCCCccH-----HHHHHHHH-HHcCCCccc-------------------------cceeEee-
Confidence 22222 346666666655555541 11111112 345665542 3345432
Q ss_pred CCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCc
Q psy13352 157 KNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYC 236 (451)
Q Consensus 157 ~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~ 236 (451)
|| |+-=.-|--|===|+..| | +||=-.-|.| + .. | .++..-.
T Consensus 117 --------d~-we~p~lga~glgwevw~~-------g------------meitqftyfq--q-~g---g----~~~~~~~ 158 (1000)
T PRK14908 117 --------DD-WENPTIGAWGLGWEVWLD-------G------------MEITQFTYFQ--Q-AG---G----KPLDPIS 158 (1000)
T ss_pred --------cC-CCCCcccccccccEEEEC-------C------------eeeeeeeeeh--h-cC---C----eeccccc
Confidence 45 543223566655666653 2 7776433332 2 33 3 3444556
Q ss_pred cccCchHHHHHHHHhcCCCccch
Q psy13352 237 VDTGMGLERLASILQNVYNNYET 259 (451)
Q Consensus 237 IDTGmGLERl~~vlQg~~snYdt 259 (451)
+.-=+|||||++.|||+.++||.
T Consensus 159 ~eitygler~~m~~q~~~~~~~~ 181 (1000)
T PRK14908 159 GEITYGIERIAMYLQKVNHFKDI 181 (1000)
T ss_pred eeeeccHHHHHHHHhCCCeeeee
Confidence 67789999999999999999976
No 17
>PF01411 tRNA-synt_2c: tRNA synthetases class II (A); InterPro: IPR018164 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Alanyl-tRNA synthetase (6.1.1.7 from EC) is an alpha4 tetramer that belongs to class IIc. ; GO: 0000166 nucleotide binding, 0004813 alanine-tRNA ligase activity, 0005524 ATP binding, 0006419 alanyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3HY1_A 3HXZ_C 3HXY_A 3HXU_A 3HY0_B 3HXV_A 3HXX_A 3HXW_A 2E1B_A 2ZZG_B ....
Probab=95.03 E-value=0.0053 Score=67.32 Aligned_cols=83 Identities=23% Similarity=0.141 Sum_probs=64.4
Q ss_pred HHHHhhcCCCCCceeecCCCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeecc---
Q psy13352 137 NIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVF--- 213 (451)
Q Consensus 137 ~iW~~~~Gv~~~rI~~~g~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVF--- 213 (451)
+.-.+.+|+|++||.-- ...| + |.||+|-|.++ |+ .|.-++||
T Consensus 108 e~lt~~l~i~~~~l~vt-----------~~~~---d-~ea~~~w~~~~-------g~------------~~~~i~~~~~~ 153 (552)
T PF01411_consen 108 EFLTEVLGIPPDRLYVT-----------VFEW---D-GEAGEIWEKIV-------GG------------PEERILVFGKK 153 (552)
T ss_dssp HHHHCTTT--GGGEEEE-----------EECC---E-CCCCCCCCECC-------TT------------ECCCEEEE-CC
T ss_pred HHHHhhcCCChHhEEEE-----------EeCC---c-hhHHHHHHHhc-------CC------------CHHHeEecCCC
Confidence 34455689999999874 2234 2 48999998876 23 68888999
Q ss_pred ccccccCCCCCCCcccccCCCCccccCchHHHHHHHHhcCCCccch
Q psy13352 214 MQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYET 259 (451)
Q Consensus 214 mqy~r~~d~~~G~~~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdt 259 (451)
|+|....+ .....|..-||+|+|+||.+|..++.++.|+.
T Consensus 154 ~nfw~~g~------~gpcgpcseI~~d~G~e~~~~~~~~~~~~~~~ 193 (552)
T PF01411_consen 154 DNFWEMGD------TGPCGPCSEIFYDRGEERGCWDSQGTPTCDDD 193 (552)
T ss_dssp EEEEESST------SEEEEEEEEEEEEEECCCHHHHHHSTSSHHHH
T ss_pred CceEECCC------CCCCCCCEEEEECCCcccCccccccccccccc
Confidence 99997654 47889999999999999999999999997766
No 18
>PF02091 tRNA-synt_2e: Glycyl-tRNA synthetase alpha subunit; InterPro: IPR002310 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. In eubacteria, glycyl-tRNA synthetase (6.1.1.14 from EC) is an alpha2/beta2 tetramer composed of 2 different subunits [, , ]. In some eubacteria, in archaea and eukaryota, glycyl-tRNA synthetase is an alpha2 dimer (see IPR002315 from INTERPRO). It belongs to class IIc and is one of the most complex synthetases. What is most interesting is the lack of similarity between the two types: divergence at the sequence level is so great that it is impossible to infer descent from common genes. The alpha and beta subunits (see IPR002311 from INTERPRO) also lack significant sequence similarity. However, they are translated from a single mRNA [], and a single chain glycyl-tRNA synthetase from Chlamydia trachomatis has been found to have significant similarity with both domains, suggesting divergence from a single polypeptide chain []. This entry represents the alpha subunit of glycyl-tRNA synthetase.; GO: 0000166 nucleotide binding, 0004820 glycine-tRNA ligase activity, 0005524 ATP binding, 0006426 glycyl-tRNA aminoacylation, 0005737 cytoplasm; PDB: 3RF1_A 3UFG_B 3RGL_B 1J5W_B.
Probab=94.86 E-value=0.078 Score=53.29 Aligned_cols=170 Identities=26% Similarity=0.344 Sum_probs=89.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-ccCCCCCCCCCCcccccccccCCCCCCC---CCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDV-FLGIEKRNYLRATSIQRCLRAGGKHNDL---ENV 79 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~gGkhnDl---dnV 79 (451)
.+|-.+--+|..++|..++.++.+= .|--.|-|. |+..--|..-+++=+|+|.|. .|= +|-
T Consensus 2 Q~iI~~Lq~fW~~~GC~i~qPyD~e-----------vGAGT~~P~Tflr~Lgpepw~vaYVqPsrRP----~DGRYGeNP 66 (284)
T PF02091_consen 2 QDIILTLQKFWADQGCIILQPYDIE-----------VGAGTFHPATFLRALGPEPWNVAYVQPSRRP----TDGRYGENP 66 (284)
T ss_dssp HHHHHHHHHHHHCTT-EE----SS-------------SSGGGSHHHHTTTSSSS-EEEEEEEEEE-G----GG--TTTSS
T ss_pred HHHHHHHHHHHHHCCCEEECCcccc-----------cccccCCHHHHHHhcCCCCccccccccCCCC----CCCccCCCc
Confidence 4677778899999999999888742 234478885 666666666789999999998 341 222
Q ss_pred CCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCC
Q psy13352 80 GYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNS 159 (451)
Q Consensus 80 G~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~ 159 (451)
-+ -.||.=|..+=--|-.+ ..+.=.+-| +.+||++. +|=+||-.
T Consensus 67 NR-Lq~y~QfQVilKPsP~n-----iq~lYL~SL-~~lGId~~-------------------------~hDIRFVE---- 110 (284)
T PF02091_consen 67 NR-LQHYYQFQVILKPSPDN-----IQELYLESL-EALGIDPK-------------------------EHDIRFVE---- 110 (284)
T ss_dssp S---SEEEEEEEEEES--TT-----HHHHHHHHH-HHCT--CC-------------------------CS-EEEEE----
T ss_pred hH-hhhhheeEEEEcCCCcc-----HHHHHHHHH-HHhCCCcc-------------------------ccceeEee----
Confidence 22 23444444443333332 111111111 23444443 34455532
Q ss_pred CCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCcccc
Q psy13352 160 PLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDT 239 (451)
Q Consensus 160 ~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~IDT 239 (451)
|| |+-=.-|--|===|+--| | +||=-.-++| + .. | .++..-.+.-
T Consensus 111 -----Dn-WEsPtLGAwGlGWEVWld-------G------------MEITQfTYFQ--Q-vG---G----i~~~pv~~EI 155 (284)
T PF02091_consen 111 -----DN-WESPTLGAWGLGWEVWLD-------G------------MEITQFTYFQ--Q-VG---G----IDCKPVSVEI 155 (284)
T ss_dssp -----E--EEETTTTEEEEEEEEEET-------T------------CEEEEEEEEE--E-ET---T----EE-SS--EEE
T ss_pred -----cC-CCCCcccccccccEEEEC-------C------------EEEEEeeeee--e-eC---C----ccccccceeh
Confidence 44 543222555555666653 2 7776443333 3 33 4 3455556777
Q ss_pred CchHHHHHHHHhcCCCccch
Q psy13352 240 GMGLERLASILQNVYNNYET 259 (451)
Q Consensus 240 GmGLERl~~vlQg~~snYdt 259 (451)
=+||||||+.|||+.++||.
T Consensus 156 TYGLERiamylQ~vdnv~dl 175 (284)
T PF02091_consen 156 TYGLERIAMYLQGVDNVYDL 175 (284)
T ss_dssp EEEHHHHHHHHCT-SSGGGS
T ss_pred hhhHHHHHHHHhCCCeeEee
Confidence 89999999999999999998
No 19
>cd00776 AsxRS_core Asx tRNA synthetase (AspRS/AsnRS) class II core domain. Assignment to class II aminoacyl-tRNA synthetases (aaRS) based upon its structure and the presence of three characteristic sequence motifs in the core domain. This family includes AsnRS as well as a subgroup of AspRS. AsnRS and AspRS are homodimers, which attach either asparagine or aspartate to the 3'OH group of ribose of the appropriate tRNA. While archaea lack asnRS, they possess a non-discriminating aspRS, which can mischarge Asp-tRNA with Asn. Subsequently, a tRNA-dependent aspartate amidotransferase converts the bound aspartate to asparagine. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=94.28 E-value=0.15 Score=52.24 Aligned_cols=95 Identities=26% Similarity=0.372 Sum_probs=61.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc------cccccCCCCC--------CCCCCccccccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF------KDVFLGIEKR--------NYLRATSIQRCLRA 69 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF------kp~flG~~~p--------~~~r~~~~QkCiR~ 69 (451)
+.|.+.+-+||.++|...|..-.+.+.. . .++..+| +|.+|-+++. ...|+-...+|.|.
T Consensus 28 s~i~~~ir~~f~~~gf~eV~TP~l~~~~-~-----e~~~~~f~~~~~~~~~yL~~Spql~lk~l~~~~~~vf~i~~~FR~ 101 (322)
T cd00776 28 SEVLRAFREFLRENGFTEVHTPKITSTD-T-----EGGAELFKVSYFGKPAYLAQSPQLYKEMLIAALERVYEIGPVFRA 101 (322)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCceecCC-C-----CccCCccccccCCCcceecCCHHHHHHHHHHhhhhhEEecccccc
Confidence 4678889999999999998765565421 1 1333444 4455544321 24778888999998
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccc-ccc-ccchHHHHHHHHHHhh
Q psy13352 70 GGKHNDLENVGYTNYHHTFFQMLGNW-SFG-DYFKYESLQWTWELLT 114 (451)
Q Consensus 70 gGkhnDldnVG~t~rHhTfFEMLGNf-SFG-dYfK~eaI~~awe~LT 114 (451)
. + ..|.||+.=|-||.-. +|. || ++.++.+=++|.
T Consensus 102 E----~----~~~~rHl~EFtmlE~e~~~~~~~--~dlm~~~e~ll~ 138 (322)
T cd00776 102 E----K----SNTRRHLSEFWMLEAEMAFIEDY--NEVMDLIEELIK 138 (322)
T ss_pred C----C----CCcCCCcceeeccceeeeccCCH--HHHHHHHHHHHH
Confidence 2 2 2267999999998765 444 55 455555555543
No 20
>TIGR00458 aspS_arch aspartyl-tRNA synthetase, archaeal type. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, aspS_arch, represents aspartyl-tRNA synthetases from the eukaryotic cytosol and from the Archaea. In some species, this enzyme aminoacylates tRNA for both Asp and Asn; Asp-tRNA(asn) is subsequently transamidated to Asn-tRNA(asn).
Probab=93.53 E-value=0.82 Score=48.82 Aligned_cols=95 Identities=20% Similarity=0.301 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc------cccccCCCCC---------CCCCCcccccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF------KDVFLGIEKR---------NYLRATSIQRCLR 68 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF------kp~flG~~~p---------~~~r~~~~QkCiR 68 (451)
+.|-+.+-+||.++|...|..--|++.. + -.|-..| ++.+|-+++. ...|+=...+|.|
T Consensus 137 s~i~~~iR~ff~~~gf~EV~TP~L~~~~-~-----eg~~~~f~v~~~~~~~yL~~Spql~~q~li~~g~~rVf~i~~~FR 210 (428)
T TIGR00458 137 SGVLESVREFLAEEGFIEVHTPKLVASA-T-----EGGTELFPITYFEREAFLGQSPQLYKQQLMAAGFERVYEIGPIFR 210 (428)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCceecCC-C-----CCCcceeeeEecCCcEEECcCHHHHHHHHHhcccCcEEEEecccc
Confidence 4567788899999999988654454321 0 0111122 3334433321 2467777889999
Q ss_pred cCCCCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHhh
Q psy13352 69 AGGKHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLT 114 (451)
Q Consensus 69 ~gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT 114 (451)
. -+ .+ |.||.+=|-||--. +|.|| ++.++.+=+++.
T Consensus 211 ~----E~---~~-t~rHl~EFt~lE~e~a~~~~--~dlm~~~e~li~ 247 (428)
T TIGR00458 211 A----EE---HN-THRHLNEATSIDIEMAFEDH--HDVMDILEELVV 247 (428)
T ss_pred c----CC---CC-CccchheeeEeeeeeccCCH--HHHHHHHHHHHH
Confidence 8 22 22 67999999998655 77787 666666655544
No 21
>PRK00488 pheS phenylalanyl-tRNA synthetase subunit alpha; Validated
Probab=93.49 E-value=0.5 Score=49.29 Aligned_cols=60 Identities=28% Similarity=0.437 Sum_probs=36.5
Q ss_pred CceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCccccc--CCCCccc--------cCchHHHHH
Q psy13352 178 PCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTK--LPKYCVD--------TGMGLERLA 247 (451)
Q Consensus 178 PcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~--Lp~k~ID--------TGmGLERl~ 247 (451)
|+-|+.+-.. . |+..++..|.+..||||-.. | .+.| |..-.|| -|||+||||
T Consensus 255 PS~Evdv~~~--~-~~g~gc~~ck~~~WiEilG~-------------G--mv~p~vl~~~gid~~~~~G~AfG~GleRla 316 (339)
T PRK00488 255 PSAEVDVSCF--K-CGGKGCRVCKGTGWLEILGC-------------G--MVHPNVLRNVGIDPEEYSGFAFGMGIERLA 316 (339)
T ss_pred CceEEEEEEe--c-cCCCcccccCCCCceEEecc-------------C--ccCHHHHHHcCCCcccceEEEEeecHHHHH
Confidence 4556665432 1 33344556777789998742 2 2222 2223344 399999999
Q ss_pred HHHhcCCC
Q psy13352 248 SILQNVYN 255 (451)
Q Consensus 248 ~vlQg~~s 255 (451)
++.-|.+.
T Consensus 317 Ml~ygi~D 324 (339)
T PRK00488 317 MLKYGIDD 324 (339)
T ss_pred HHHhCCcH
Confidence 99988765
No 22
>cd00669 Asp_Lys_Asn_RS_core Asp_Lys_Asn_tRNA synthetase class II core domain. This domain is the core catalytic domain of class II aminoacyl-tRNA synthetases of the subgroup containing aspartyl, lysyl, and asparaginyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. Nearly all class II tRNA synthetases are dimers and enzymes in this subgroup are homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=93.36 E-value=0.2 Score=50.21 Aligned_cols=97 Identities=22% Similarity=0.283 Sum_probs=57.6
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCcc--CCCCCccccccccccc---cccccCCCC---------CCCCCCccccccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIP--DNDSSLLFTNSGMVQF---KDVFLGIEK---------RNYLRATSIQRCLRA 69 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp--~~dptllFtnAGM~qF---kp~flG~~~---------p~~~r~~~~QkCiR~ 69 (451)
++|-+.+-+||.++|...|..--+.+ .+...-.|.-. .| ++++|-+++ ....|+=...+|.|.
T Consensus 5 s~i~~~ir~~f~~~gf~ev~tP~l~~~~~~~~~~~f~~~---~~~~g~~~~L~~Spql~~~~~~~~~~~~vf~i~~~fR~ 81 (269)
T cd00669 5 SKIIKAIRDFMDDRGFLEVETPMLQKITGGAGARPFLVK---YNALGLDYYLRISPQLFKKRLMVGGLDRVFEINRNFRN 81 (269)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEeccCCccccceEEee---ecCCCCcEEeecCHHHHHHHHHhcCCCcEEEEecceeC
Confidence 57888999999999999885544432 11111122110 01 222332211 123577778899996
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHhh
Q psy13352 70 GGKHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLT 114 (451)
Q Consensus 70 gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT 114 (451)
| +.|.||+.=|-||--- +|.+| +|.+..+=+++.
T Consensus 82 -----e----~~~~~hl~EF~~le~e~~~~~~--~dvm~~~e~lv~ 116 (269)
T cd00669 82 -----E----DLRARHQPEFTMMDLEMAFADY--EDVIELTERLVR 116 (269)
T ss_pred -----C----CCCCCcccceeEEEEEEecCCH--HHHHHHHHHHHH
Confidence 4 3478999999988654 66676 556665555544
No 23
>TIGR00462 genX lysyl-tRNA synthetase-like protein GenX. Many Gram-negative bacteria have a protein closely homologous to the C-terminal region of lysyl-tRNA synthetase (LysS). Multiple sequence alignment of these proteins with the homologous regions of collected LysS proteins shows that these proteins form a distinct set rather than just similar truncations of LysS. The protein is termed GenX after its designation in E. coli. Interestingly, genX often is located near a homolog of lysine-2,3-aminomutase. Its function is unknown.
Probab=92.49 E-value=0.7 Score=47.05 Aligned_cols=99 Identities=21% Similarity=0.294 Sum_probs=62.6
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc-----------cccccCCCC---------CCCCCCccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF-----------KDVFLGIEK---------RNYLRATSI 63 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF-----------kp~flG~~~---------p~~~r~~~~ 63 (451)
+.|-+.+-+||.++|..-|.+--+.+.. -+.+|..+| ++.+|-+++ ....|+=..
T Consensus 5 s~i~~~ir~~f~~~gF~EV~TP~l~~~~-----~~e~~~~~F~~~y~~~~~~~~~~yL~~Spql~lk~ll~~g~~rVfei 79 (304)
T TIGR00462 5 ARLLAAIRAFFAERGVLEVETPLLSPAP-----VTDPHLDAFATEFLGPDGEGRPLYLQTSPEYAMKRLLAAGSGPIFQI 79 (304)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEecCC-----CCCcCCcceeeeccCCCCCCcceeeecCHHHHHHHHHhccCCCEEEE
Confidence 4677889999999999988665555421 011222233 344444332 124677778
Q ss_pred ccccccCCCCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHhhhhcC
Q psy13352 64 QRCLRAGGKHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLTQIYG 118 (451)
Q Consensus 64 QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT~~lg 118 (451)
-||.|+. ++ +.||.+=|-||=-. ++.|| ++.++.+=+++..++.
T Consensus 80 gp~FRaE-------~~--~~rHl~EFtmLE~e~~~~d~--~d~m~~~e~li~~i~~ 124 (304)
T TIGR00462 80 CKVFRNG-------ER--GRRHNPEFTMLEWYRPGFDY--HDLMDEVEALLQELLG 124 (304)
T ss_pred cCceeCC-------CC--CCCcccHHHhHHHHHHcCCH--HHHHHHHHHHHHHHHH
Confidence 8999982 23 47999999997433 45565 6677777777665553
No 24
>cd00777 AspRS_core Asp tRNA synthetase (aspRS) class II core domain. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. AspRS is a homodimer, which attaches a specific amino acid to the 3' OH group of ribose of the appropriate tRNA. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate. AspRS in this family differ from those found in the AsxRS family by a GAD insert in the core domain.
Probab=90.85 E-value=0.53 Score=47.46 Aligned_cols=100 Identities=17% Similarity=0.220 Sum_probs=56.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCc--cccccccccccc-cccCCCC---------CCCCCCcccccccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSL--LFTNSGMVQFKD-VFLGIEK---------RNYLRATSIQRCLRAGG 71 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptl--lFtnAGM~qFkp-~flG~~~---------p~~~r~~~~QkCiR~gG 71 (451)
++|-+.+-+||.++|...|.+=-|.+...+.. ..+..-- ..+. +.|-+++ ....|+-...+|.|.
T Consensus 5 s~i~~~iR~f~~~~gfiEV~TP~L~~~~~~g~~~f~~~~~~-~~~~~~~L~~Spql~lk~ll~~g~~~v~~i~~~fR~-- 81 (280)
T cd00777 5 SRVIKAIRNFLDEQGFVEIETPILTKSTPEGARDFLVPSRL-HPGKFYALPQSPQLFKQLLMVSGFDRYFQIARCFRD-- 81 (280)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeecCCCCCCCCceecccc-CCCceeecccCHHHHHHHHHhcCcCcEEEeccceeC--
Confidence 56778889999999999885444443222221 2211100 0011 2232221 124678888999997
Q ss_pred CCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHhhh
Q psy13352 72 KHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLTQ 115 (451)
Q Consensus 72 khnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT~ 115 (451)
++.+ ++||. =|.|++-- +|.|| ++.++..=+++..
T Consensus 82 -----e~~~-~~r~~-Ef~~~e~e~~~~~~--~dlm~~~e~li~~ 117 (280)
T cd00777 82 -----EDLR-ADRQP-EFTQIDIEMSFVDQ--EDIMSLIEGLLKY 117 (280)
T ss_pred -----CCCC-CCccc-eeEEeEeeeccCCH--HHHHHHHHHHHHH
Confidence 2333 56665 77787655 67776 5566666555543
No 25
>TIGR00499 lysS_bact lysyl-tRNA synthetase, eukaryotic and non-spirochete bacterial. This model represents the lysyl-tRNA synthetases that are class II amino-acyl tRNA synthetases. It includes all eukaryotic and most bacterial examples of the enzyme, but not archaeal or spirochete forms.
Probab=86.69 E-value=4.6 Score=44.12 Aligned_cols=95 Identities=20% Similarity=0.313 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc--------cccccCCCCC---------CCCCCcccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF--------KDVFLGIEKR---------NYLRATSIQRC 66 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF--------kp~flG~~~p---------~~~r~~~~QkC 66 (451)
+.|-+.+-+||.++|...|..--|.+.. ..|..-+| ++.+|-+++. ...|+=..-||
T Consensus 176 s~i~~~iR~fl~~~gF~EVeTP~L~~~~------gga~a~pF~t~~~~~~~~~yLriSpELylKrlivgG~~rVfeIg~~ 249 (496)
T TIGR00499 176 SKIIKAIRRFLDDRGFIEVETPMLQVIP------GGANARPFITHHNALDMDLYLRIAPELYLKRLIVGGFEKVYEIGRN 249 (496)
T ss_pred HHHHHHHHHHHHHCcCEEEeCCeeecCC------CCccceeEEeecccCCCceEEecCHHHHHHHHHhCCCCceEEEecc
Confidence 4567788899999999988554444321 11222222 2334433321 24667778899
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhcc-cccccc-----chHHHHHHHHHHh
Q psy13352 67 LRAGGKHNDLENVGYTNYHHTFFQMLGN-WSFGDY-----FKYESLQWTWELL 113 (451)
Q Consensus 67 iR~gGkhnDldnVG~t~rHhTfFEMLGN-fSFGdY-----fK~eaI~~awe~L 113 (451)
.|.. + + +.||..=|-||=- ++|.|| +-++.|..++.-+
T Consensus 250 FRnE----~---~--~~rH~pEFTmlE~y~a~~d~~dlm~~~E~li~~i~~~l 293 (496)
T TIGR00499 250 FRNE----G---V--DTTHNPEFTMIEFYQAYADYEDLMDLTENLFKFLAQEL 293 (496)
T ss_pred eecC----C---C--CCcccchhheeehhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 9972 2 2 3599999999876 477787 3344454444433
No 26
>PRK05159 aspC aspartyl-tRNA synthetase; Provisional
Probab=86.32 E-value=2.8 Score=44.82 Aligned_cols=85 Identities=21% Similarity=0.325 Sum_probs=51.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccC---CCCCccccccccccc-cccccCCCCC---------CCCCCcccccccccC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPD---NDSSLLFTNSGMVQF-KDVFLGIEKR---------NYLRATSIQRCLRAG 70 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~---~dptllFtnAGM~qF-kp~flG~~~p---------~~~r~~~~QkCiR~g 70 (451)
+.|-+.+-+||.++|...|..-.|+.. .--+ .|.- +.| ++++|-+++. ...|+=..-+|.|..
T Consensus 140 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~eg~~~-~f~~---~~~~~~~~L~~Spql~~q~l~~~g~~rVf~i~~~FR~E 215 (437)
T PRK05159 140 SEVLRAFREFLYENGFTEIFTPKIVASGTEGGAE-LFPI---DYFEKEAYLAQSPQLYKQMMVGAGFERVFEIGPVFRAE 215 (437)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCcccccCCCCCcc-eEeE---EecCCceEecCCHHHHHHHHHhcCCCcEEEEeceeeCC
Confidence 456778889999999998865444321 1111 1110 001 3445544321 246777788999982
Q ss_pred CCCCCCCCCCCCCCchhhhhhhccc-cccc-c
Q psy13352 71 GKHNDLENVGYTNYHHTFFQMLGNW-SFGD-Y 100 (451)
Q Consensus 71 GkhnDldnVG~t~rHhTfFEMLGNf-SFGd-Y 100 (451)
+ ++ |.||..=|-||--. +|.| |
T Consensus 216 ----~---~~-t~rHl~EFt~lE~e~a~~~~~ 239 (437)
T PRK05159 216 ----E---HN-TSRHLNEYTSIDVEMGFIDDH 239 (437)
T ss_pred ----C---CC-CcccchhhheeeeeeeecccH
Confidence 2 22 67999889998655 6766 6
No 27
>PTZ00326 phenylalanyl-tRNA synthetase alpha chain; Provisional
Probab=81.53 E-value=3.3 Score=45.33 Aligned_cols=124 Identities=19% Similarity=0.181 Sum_probs=70.7
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCchhhhhhhcccccc-ccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHH
Q psy13352 58 LRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFG-DYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETY 136 (451)
Q Consensus 58 ~r~~~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNfSFG-dYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~ 136 (451)
-|+.++.+|.|- |=. |+.|+--|.=++-+-+| +.=-.+-+..+-+|+. .+|+..=|..-+||+
T Consensus 358 ~k~fsigrVfR~-----d~~----DatH~~eFhQ~Eg~vi~~~~s~~~L~~~l~~f~~-~lG~~~~RfrP~yfP------ 421 (494)
T PTZ00326 358 KKYFSIDRVFRN-----ETL----DATHLAEFHQVEGFVIDRNLTLGDLIGTIREFFR-RIGITKLRFKPAFNP------ 421 (494)
T ss_pred ceEEecCCEecC-----CCC----CCCcCceeEEEEEEEEeCCCCHHHHHHHHHHHHH-hcCCCceEEecCCCC------
Confidence 467788889995 522 35555444333323332 2222466777777774 346643333333332
Q ss_pred HHHHhhcCCCCCceeecCCCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccc
Q psy13352 137 NIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQF 216 (451)
Q Consensus 137 ~iW~~~~Gv~~~rI~~~g~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy 216 (451)
+ | =|+.||+..+. + +.+||||-|.=.++-
T Consensus 422 -------------------------------f----T---EPS~Ev~v~~~-----~--------~gkWIEIgg~Gm~rp 450 (494)
T PTZ00326 422 -------------------------------Y----T---EPSMEIFGYHP-----G--------LKKWVEVGNSGIFRP 450 (494)
T ss_pred -------------------------------C----C---CCeeEEEEEec-----C--------CCcEEEEeCcCccCH
Confidence 1 1 25789987542 1 236999998755542
Q ss_pred ccc-CCCCCCCcccccCCCCccccCchHHHHHHHHhcCCC
Q psy13352 217 NKE-INPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYN 255 (451)
Q Consensus 217 ~r~-~d~~~G~~~l~~Lp~k~IDTGmGLERl~~vlQg~~s 255 (451)
+-. +- | + |=+..++==||||||+|++.-|.+.
T Consensus 451 evL~~~---G---i-~~~~~~~A~GlGleRlaMi~ygi~D 483 (494)
T PTZ00326 451 EMLRPM---G---F-PEDVTVIAWGLSLERPTMIKYGIKN 483 (494)
T ss_pred HHHHhc---C---C-CCcceEEEEEecHHHHHHHHhCCcH
Confidence 221 12 3 2 2233367789999999999988765
No 28
>KOG1501|consensus
Probab=79.86 E-value=2.4 Score=46.01 Aligned_cols=71 Identities=24% Similarity=0.330 Sum_probs=55.9
Q ss_pred ccccCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCC---C------CCCcceEEe----echhhhhhh---hhhc
Q psy13352 236 CVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCN---N------LKNNSLKVI----ADHIRACVF---LIID 299 (451)
Q Consensus 236 ~IDTGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~---~------~~~~a~rvI----aDH~Ra~~f---~IaD 299 (451)
.|+||-||=-+-++-.|..+.|-..+|+|+.+...+++.++ + ...+.+.|+ ||-+-+..| +|..
T Consensus 72 digtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~e~fdtElige 151 (636)
T KOG1501|consen 72 DIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVREDFDTELIGE 151 (636)
T ss_pred EccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhHhhhhhhhhcc
Confidence 58999999999999999999999999999999999887653 1 223455666 555555444 6899
Q ss_pred CcccCCC
Q psy13352 300 GVFPGNE 306 (451)
Q Consensus 300 Gv~PsN~ 306 (451)
|++||=+
T Consensus 152 Galps~q 158 (636)
T KOG1501|consen 152 GALPSLQ 158 (636)
T ss_pred ccchhHH
Confidence 9999855
No 29
>PTZ00450 macrophage migration inhibitory factor-like protein; Provisional
Probab=79.26 E-value=2.4 Score=37.50 Aligned_cols=24 Identities=21% Similarity=0.369 Sum_probs=20.3
Q ss_pred HHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 107 QWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 107 ~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
+---++|++.||||++|+||.++.
T Consensus 79 ~~i~~~l~~~LgIp~dRiYI~f~d 102 (113)
T PTZ00450 79 PRITAAITKECGIPAERIYVFYYS 102 (113)
T ss_pred HHHHHHHHHHcCCCcccEEEEEEc
Confidence 445678999999999999999874
No 30
>PTZ00397 macrophage migration inhibition factor-like protein; Provisional
Probab=76.63 E-value=3.4 Score=35.92 Aligned_cols=29 Identities=14% Similarity=0.073 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 102 KYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 102 K~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
|++-.+---++|.+.||+||+|+||.++.
T Consensus 74 k~~l~~~i~~~l~~~lgi~~~rv~I~f~~ 102 (116)
T PTZ00397 74 NSSIAAAITKILASHLKVKSERVYIEFKD 102 (116)
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55666666788999999999999999765
No 31
>KOG1759|consensus
Probab=71.61 E-value=4.9 Score=35.97 Aligned_cols=26 Identities=23% Similarity=0.262 Sum_probs=21.8
Q ss_pred HHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 105 SLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 105 aI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-.+---|+|.+.|+||++|+|+++|.
T Consensus 76 ~sa~l~~il~~~L~l~~~rv~I~f~d 101 (115)
T KOG1759|consen 76 YSAALTEILEKELSLDPDRVYIKFYD 101 (115)
T ss_pred HHHHHHHHHHHHhCCCCCeEEEEEec
Confidence 33445689999999999999999886
No 32
>COG0016 PheS Phenylalanyl-tRNA synthetase alpha subunit [Translation, ribosomal structure and biogenesis]
Probab=71.32 E-value=4.5 Score=42.30 Aligned_cols=60 Identities=23% Similarity=0.295 Sum_probs=35.2
Q ss_pred CceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccccCchHHHHHHHHhcCCC
Q psy13352 178 PCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYN 255 (451)
Q Consensus 178 PcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~IDTGmGLERl~~vlQg~~s 255 (451)
|+-|+.+... + |.+||||.+.=-..-+-... -| +.|-+....==|||+||||++.-|.+.
T Consensus 262 PS~Evdv~~~-----~--------~~~WlEi~G~Gmv~P~VL~~--~G---~~~~~~~GfAfGlGlERlAMLkygI~D 321 (335)
T COG0016 262 PSAEVDVYCP-----G--------CGGWLEILGCGMVHPNVLEA--VG---IDPEEYSGFAFGLGLERLAMLKYGIPD 321 (335)
T ss_pred CeEEEEEEEc-----C--------CCCEEEEecccccCHHHHHh--cC---CCCCcceEEEEeecHHHHHHHHhCCcH
Confidence 6888887542 1 24789998652222221111 02 323233333679999999999988765
No 33
>PF01422 zf-NF-X1: NF-X1 type zinc finger; InterPro: IPR000967 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a domain presumed to be a zinc binding domain. The following pattern describes the zinc finger: C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C where X can be any amino acid, and numbers in brackets indicate the number of residues. The two position can be either His or Cys. This domain is found in the human transcriptional repressor NK-X1, a repressor of HLA-DRA transcription; the Drosophila shuttle craft protein, which plays an essential role during the late stages of embryonic neurogenesis; and a yeast hypothetical protein YNL023C. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0008270 zinc ion binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=67.64 E-value=2.4 Score=26.89 Aligned_cols=9 Identities=56% Similarity=1.678 Sum_probs=7.5
Q ss_pred CCCCCCcee
Q psy13352 173 TGPCGPCSE 181 (451)
Q Consensus 173 ~GPCGPcsE 181 (451)
.|||+||++
T Consensus 12 ~G~C~pC~~ 20 (20)
T PF01422_consen 12 PGPCPPCPQ 20 (20)
T ss_pred CCcCCCCCC
Confidence 489999975
No 34
>COG2024 Phenylalanyl-tRNA synthetase alpha subunit (archaeal type) [Translation, ribosomal structure and biogenesis]
Probab=67.30 E-value=8.3 Score=41.27 Aligned_cols=66 Identities=24% Similarity=0.311 Sum_probs=40.8
Q ss_pred CCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccccCchHHHHHHHHhcCCC
Q psy13352 177 GPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYN 255 (451)
Q Consensus 177 GPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~IDTGmGLERl~~vlQg~~s 255 (451)
|.-||+|--+..- .++...-.+.|+||... --|.-.+- .---.|.++.--|.|.||||+||.|.+.
T Consensus 279 ~TQTEVyAyHPkL-----~gs~~kysdgWiEiATF--GlYSP~AL------aeY~Id~pVMNLGlGVERlaMIl~g~~D 344 (536)
T COG2024 279 GTQTEVYAYHPKL-----VGSIEKYSDGWIEIATF--GLYSPIAL------AEYGIDYPVMNLGLGVERLAMILHGADD 344 (536)
T ss_pred CccceEEEecccc-----cccccccCCCcEEEEee--cccChHHH------HHcCCCCceeecchhHHHHHHHHhCchH
Confidence 4578999744221 12333456789999853 22222111 0112566777789999999999998654
No 35
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=63.02 E-value=16 Score=40.72 Aligned_cols=95 Identities=22% Similarity=0.348 Sum_probs=60.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc------cccccCCCCC---------CCCCCcccccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF------KDVFLGIEKR---------NYLRATSIQRCLR 68 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF------kp~flG~~~p---------~~~r~~~~QkCiR 68 (451)
++|-+.|-+||.++|..-|..-.|+... +..|-..| ++++|-+++. ...|+=...+|+|
T Consensus 217 s~i~~~~R~fl~~~gFiEV~TP~L~~~~------~egga~~F~v~yf~~~~~L~qSpql~kq~li~~g~~rVfeI~p~FR 290 (550)
T PTZ00401 217 SRVCQYFRQFLIDSDFCEIHSPKIINAP------SEGGANVFKLEYFNRFAYLAQSPQLYKQMVLQGDVPRVFEVGPVFR 290 (550)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCccccCC------CCccccccccccCCCCeecCCCHHHHHHHHHhcCCCCEEEEeCeEe
Confidence 4677889999999999988655554311 11122223 4455544432 2567777889999
Q ss_pred cCCCCCCCCCCCCCCCchhhhhhhcc-cccc-ccchHHHHHHHHHHhh
Q psy13352 69 AGGKHNDLENVGYTNYHHTFFQMLGN-WSFG-DYFKYESLQWTWELLT 114 (451)
Q Consensus 69 ~gGkhnDldnVG~t~rHhTfFEMLGN-fSFG-dYfK~eaI~~awe~LT 114 (451)
. - +.+ |.||++=|-||=- .+|+ +| +|.++.+=+++.
T Consensus 291 a----E---~s~-T~RHl~EFt~Le~E~~~~~~y--~evm~~~e~l~~ 328 (550)
T PTZ00401 291 S----E---NSN-THRHLTEFVGLDVEMRINEHY--YEVLDLAESLFN 328 (550)
T ss_pred C----C---CCC-CCCCccchhhhhhhhHhcCCH--HHHHHHHHHHHH
Confidence 8 2 333 7899999999877 6775 56 345555544443
No 36
>PRK09350 poxB regulator PoxA; Provisional
Probab=62.02 E-value=26 Score=35.76 Aligned_cols=108 Identities=20% Similarity=0.270 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccc-c-----------ccCCCC---------CCCCCCcc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKD-V-----------FLGIEK---------RNYLRATS 62 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp-~-----------flG~~~---------p~~~r~~~ 62 (451)
++|.+.+-+||.++|..-|.+--+.+.+ . ++|.+.+|+. | +|-+++ ....|+..
T Consensus 9 ~~i~~~ir~~f~~~gf~EV~TP~l~~~~-~----~~~~~~~f~~~y~~~~~~~~~~~~L~~SPe~~~kr~la~~~~rvf~ 83 (306)
T PRK09350 9 AKIIAEIRRFFADRGVLEVETPILSQAT-V----TDIHLVPFETRFVGPGASQGKTLWLMTSPEYHMKRLLAAGSGPIFQ 83 (306)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEeccc-C----CCccCCceeeeeccccccCCcceEEecCHHHHHHHHhhccccceEE
Confidence 5788999999999999998554443311 0 1333434432 2 221111 11357888
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHhhhhcCCCCCceEEEE
Q psy13352 63 IQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLTQIYGLSIERLWITV 128 (451)
Q Consensus 63 ~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv 128 (451)
..+|.|. .+ . |.||.+=|-||=-. ++.|| ++.+...=+++...++..+-+ .+||
T Consensus 84 i~~~FR~----e~---~--~~~H~~EFt~lE~y~~~~d~--~dlm~~~E~li~~i~~~~~~~-~i~~ 138 (306)
T PRK09350 84 ICKSFRN----EE---A--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLDCEPAE-SLSY 138 (306)
T ss_pred ecceeec----CC---C--CCCCCcHHHhhhhhhhCCCH--HHHHHHHHHHHHHHHhcCCce-EEEH
Confidence 8899998 22 2 68999988887554 45565 778888888887777764432 3553
No 37
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=61.52 E-value=77 Score=32.68 Aligned_cols=196 Identities=17% Similarity=0.113 Sum_probs=115.5
Q ss_pred cccCCCCccccCchHHHHHHHHhcCCCccch------hhhHHHHHHHHHHhCC--CCCCCcceEE---eechhhhhhhhh
Q psy13352 229 LTKLPKYCVDTGMGLERLASILQNVYNNYET------DLFKTLIKAAARETNC--NNLKNNSLKV---IADHIRACVFLI 297 (451)
Q Consensus 229 l~~Lp~k~IDTGmGLERl~~vlQg~~snYdt------DlF~pli~~i~~~~g~--~~~~~~a~rv---IaDH~Ra~~f~I 297 (451)
+...+-..+-++-+++|+..+.......... .-|......+.+.... +......+|- .-..+|+...-+
T Consensus 31 ~~~~d~~~~~~~~~~~~l~~l~~a~~~il~~~~~~~r~~F~~~~~~l~~~~~l~~p~~~a~~~~~d~~~f~~ir~~i~k~ 110 (335)
T PF11867_consen 31 FHGFDYSKFFEASPFERLELLDDAVDHILSLEDEERRKRFLKLVKELSKAYALCLPDPEAEEYRDDIAFFQAIRAAIRKL 110 (335)
T ss_pred hcCCChHHhcCCChHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344555677788899999998887777752 2344444444443321 1111111211 123456666555
Q ss_pred hcCcc-cCCCCCchHHHHHHHHHHHHHH------HhCCCCchhhhhHHHHHHHhhh-hChhhhhcHHHHHHHHHHHHHHH
Q psy13352 298 IDGVF-PGNEGRGYVLRRIIRRAIRYGY------KLGQNSIFLYKLVKDLIFNTYI-IYKELKISVIKIEEILKKEEECF 369 (451)
Q Consensus 298 aDGv~-PsN~GrGYvlRrilRRa~r~~~------~lg~~~~fl~~Lv~~vi~~m~~-~ypeL~~~~~~I~~ii~~EE~~F 369 (451)
..+-- |+....+.-+|.||-.++..-. ..|.+.|=++-|-+...+.+.. -+|.++. +.|+..|+.+-+..
T Consensus 111 ~~~~~~~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~--e~L~~~l~~~I~~~ 188 (335)
T PF11867_consen 111 YSDDDGPDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKA--ELLEKLLRDEIKVR 188 (335)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHH--HHHHHHHHHHHHHH
Confidence 55444 8888888999999999998543 2355555455555566555554 3777654 56888887776554
Q ss_pred HHH-H---HHHHHHHHHHHhc-CCCCCChHHHHHHHhcCCCCHHhHHHHHHH------cCCccCHhhHHHHHHH
Q psy13352 370 RKT-L---KYGIKILENILLT-KPDKLDGKLAFILYDTYGFPIDLTIDICKE------HNVSFNKNDFILEMEK 432 (451)
Q Consensus 370 ~~t-L---~~G~~~l~~~l~~-~~~~l~g~~af~LydtyGfP~dlt~eia~e------~gi~vd~~~f~~~~~~ 432 (451)
.+. . .+-.+.|+++|++ +++.++-++++.-. ++|..+|..+ .|++-++-.|+.++.+
T Consensus 189 ~~~N~~~~~~fsErLe~iI~~Y~~~~i~~~e~~~eL------i~la~el~~~~~r~~~~gLseeE~AFyd~L~~ 256 (335)
T PF11867_consen 189 MKENPVRYKKFSERLEEIIEKYNNRSISSEEVIEEL------IKLAKELREEEERAEELGLSEEELAFYDALAK 256 (335)
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHcccchHHHHHHHH------HHHHHHHHHHHhcccccCCCHHHHHHHHHHHc
Confidence 332 1 2223456677766 45668877777432 3445666544 4666665578888744
No 38
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=61.41 E-value=8.6 Score=33.43 Aligned_cols=24 Identities=21% Similarity=0.289 Sum_probs=17.6
Q ss_pred HHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 107 QWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 107 ~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
+---++|.+.||||++|+||.++.
T Consensus 77 ~~i~~~l~~~LgIp~~Riyi~f~d 100 (114)
T PF01187_consen 77 AAITEFLEEELGIPPDRIYINFHD 100 (114)
T ss_dssp HHHHHHHHHHHT--GGGEEEEEEE
T ss_pred HHHHHHHHHHhCCCcCceEEEEEE
Confidence 334577889999999999999775
No 39
>cd00670 Gly_His_Pro_Ser_Thr_tRS_core Gly_His_Pro_Ser_Thr_tRNA synthetase class II core domain. This domain is the core catalytic domain of tRNA synthetases of the subgroup containing glycyl, histidyl, prolyl, seryl and threonyl tRNA synthetases. It is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. These enzymes belong to class II aminoacyl-tRNA synthetases (aaRS) based upon their structure and the presence of three characteristic sequence motifs in the core domain. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ and the accessory subunit of mitochondrial polymerase gamma (Pol gamma b) . Most class II tRNA synthetases are dimers, with this subgroup consisting of mostly homodimers. These enzymes attach a specific amino acid to the 3' OH group of ribose of the appropriate tRNA.
Probab=60.49 E-value=13 Score=35.33 Aligned_cols=105 Identities=23% Similarity=0.247 Sum_probs=63.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccc--------cccc----------------------cccccCCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSG--------MVQF----------------------KDVFLGIE 53 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAG--------M~qF----------------------kp~flG~~ 53 (451)
..|.+.+.+.|++.|+..|..-.|.|.. +|...| |..| -.++....
T Consensus 6 ~~l~~~~~~~~~~~G~~ei~~P~l~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~LrP~~~~~i~~~~~~~~ 81 (235)
T cd00670 6 RALERFLDDRMAEYGYQEILFPFLAPTV----LFFKGGHLDGYRKEMYTFEDKGRELRDTDLVLRPAACEPIYQIFSGEI 81 (235)
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEcCHH----HHhhcCCcccchhhcCeeccCcccccCCeEEEecCCCHHHHHHHhccC
Confidence 4678889999999999998777776631 111111 1112 11222211
Q ss_pred C---CCCCCCcccccccccCCCCCCCCCC-CCCCCchhhhhhhccccccc-----cchHHHHHHHHHHhhhhcCCC
Q psy13352 54 K---RNYLRATSIQRCLRAGGKHNDLENV-GYTNYHHTFFQMLGNWSFGD-----YFKYESLQWTWELLTQIYGLS 120 (451)
Q Consensus 54 ~---p~~~r~~~~QkCiR~gGkhnDldnV-G~t~rHhTfFEMLGNfSFGd-----YfK~eaI~~awe~LT~~lgl~ 120 (451)
. +..-|++.+.+|.|. ..... |. .|-+- |.|.|-+.||+ ..-.|.++.++++|. .||++
T Consensus 82 ~~~~~lP~r~~~~g~~fR~-----E~~~~~gl-~R~re-F~q~e~~~~~~~~~~~~~~~e~~~~~~~~l~-~lgl~ 149 (235)
T cd00670 82 LSYRALPLRLDQIGPCFRH-----EPSGRRGL-MRVRE-FRQVEYVVFGEPEEAEEERREWLELAEEIAR-ELGLP 149 (235)
T ss_pred ccchhcCeeeeeecccccC-----CCCCCCCC-hhhee-eeeceEEEEcCHHHHHHHHHHHHHHHHHHHH-HcCCc
Confidence 1 112367888999996 33321 22 23333 88999999984 345678889999884 56884
No 40
>PF01409 tRNA-synt_2d: tRNA synthetases class II core domain (F); InterPro: IPR002319 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. Phenylalanyl-tRNA synthetase (6.1.1.20 from EC) is an alpha2/beta2 tetramer composed of 2 subunits that belongs to class IIc. In eubacteria, a small subunit (pheS gene) can be designated as beta (E. coli) or alpha subunit (nomenclature adopted in InterPro). Reciprocally the large subunit (pheT gene) can be designated as alpha (E. coli) or beta (see IPR004531 from INTERPRO and IPR004532 from INTERPRO). In all other kingdoms the two subunits have equivalent length in eukaryota, and can be identified by specific signatures. The enzyme from Thermus thermophilus has an alpha 2 beta 2 type quaternary structure and is one of the most complicated members of the synthetase family. Identification of phenylalanyl-tRNA synthetase as a member of class II aaRSs was based only on sequence alignment of the small alpha-subunit with other synthetases [].; GO: 0000049 tRNA binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0043039 tRNA aminoacylation, 0005737 cytoplasm; PDB: 3TUP_A 3HFV_A 3CMQ_A 3TEG_A 2AKW_B 1B70_B 1B7Y_B 2ALY_B 2IY5_B 2AMC_B ....
Probab=58.59 E-value=5.1 Score=39.86 Aligned_cols=22 Identities=32% Similarity=0.374 Sum_probs=18.1
Q ss_pred CccccCchHHHHHHHHhcCCCc
Q psy13352 235 YCVDTGMGLERLASILQNVYNN 256 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~sn 256 (451)
..+=-||||||||++..|.+..
T Consensus 212 ~~~A~G~GleRlam~~~gi~di 233 (247)
T PF01409_consen 212 PGFAFGLGLERLAMLKYGIPDI 233 (247)
T ss_dssp EEEEEEEEHHHHHHHHHT-SSG
T ss_pred eEEEecCCHHHHHHHHcCCchH
Confidence 5667799999999999998764
No 41
>PLN02850 aspartate-tRNA ligase
Probab=54.51 E-value=29 Score=38.38 Aligned_cols=97 Identities=27% Similarity=0.349 Sum_probs=58.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCC-CC-Cccccccccccc-cccccCCCCC---------CCCCCcccccccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDN-DS-SLLFTNSGMVQF-KDVFLGIEKR---------NYLRATSIQRCLRAGG 71 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~-dp-tllFtnAGM~qF-kp~flG~~~p---------~~~r~~~~QkCiR~gG 71 (451)
+.|-+.|-+||.++|...|..--|++.. ++ .-.|.. ..| ++++|-+++. ...|+=...+|+|+.
T Consensus 229 s~i~~~~R~fl~~~gF~EV~TP~L~~~~~egga~~F~v---~yf~~~~~L~qSpql~kq~li~~g~~rVfeIgp~FRaE- 304 (530)
T PLN02850 229 SQVCNLFREFLLSKGFVEIHTPKLIAGASEGGSAVFRL---DYKGQPACLAQSPQLHKQMAICGDFRRVFEIGPVFRAE- 304 (530)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCccccCCCccccceeee---ccCCcceecCCCHHHHHHHHHHhcCCceEEEecccccC-
Confidence 4677889999999999888654443321 11 112221 011 4455544431 246777889999982
Q ss_pred CCCCCCCCCCCCCchhhhhhhccc-ccc-ccchHHHHHHHHHHh
Q psy13352 72 KHNDLENVGYTNYHHTFFQMLGNW-SFG-DYFKYESLQWTWELL 113 (451)
Q Consensus 72 khnDldnVG~t~rHhTfFEMLGNf-SFG-dYfK~eaI~~awe~L 113 (451)
+ ..|.||.+=|-||=-. +|+ +| +|.++.+=+++
T Consensus 305 ---~----s~t~RHl~EFt~Le~Em~~~~~y--~evm~~~E~ll 339 (530)
T PLN02850 305 ---D----SFTHRHLCEFTGLDLEMEIKEHY--SEVLDVVDELF 339 (530)
T ss_pred ---C----CCCCccchhhccchhhhhhhcCH--HHHHHHHHHHH
Confidence 2 2478999999998655 776 35 34444444433
No 42
>cd00773 HisRS-like_core Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain. HisRS is a homodimer. It is responsible for the attachment of histidine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP-dependent formation of the enzyme bound aminoacyl-adenylate. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the C-terminus of eukaryotic GCN2 protein kinase and at the N-terminus of the ATP phosphoribosyltransferase accessory subunit, HisZ. HisZ along with HisG catalyze the first reaction in histidine biosynthesis. HisZ is found only in a subset of bacteria and differs from HisRS in lacking a C-terminal anti-codon binding domain.
Probab=52.62 E-value=28 Score=34.20 Aligned_cols=110 Identities=15% Similarity=0.089 Sum_probs=64.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCC--C--------C-Ccccccc-c-cccccccccCC--------CC--CCCCCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDN--D--------S-SLLFTNS-G-MVQFKDVFLGI--------EK--RNYLRA 60 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~--d--------p-tllFtnA-G-M~qFkp~flG~--------~~--p~~~r~ 60 (451)
+.|++.+.+.|+++|...|....|.|.+ - . ..-|++- | ...+.|-++=. .. +-..|.
T Consensus 6 ~~l~~~l~~~f~~~Gy~~v~tP~le~~~~~~~~~~~~~~~~~~~~~d~~g~~l~LRpd~T~~iaR~~a~~~~~~~~p~k~ 85 (261)
T cd00773 6 RYIEDTLREVFERYGYEEIDTPVFEYTELFLRKSGDEVSKEMYRFKDKGGRDLALRPDLTAPVARAVAENLLSLPLPLKL 85 (261)
T ss_pred HHHHHHHHHHHHHcCCEEeeccceeeHHHhcccccccccceEEEEECCCCCEEEeCCCCcHHHHHHHHhcCccCCCCeEE
Confidence 5789999999999999999777766631 0 0 0111110 1 12222211100 00 112367
Q ss_pred cccccccccCCCCCCCCCCCCC-CCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCC
Q psy13352 61 TSIQRCLRAGGKHNDLENVGYT-NYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSI 121 (451)
Q Consensus 61 ~~~QkCiR~gGkhnDldnVG~t-~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~ 121 (451)
..+++|.|. +.-. -|+. ..+..-+|++|.-|.- --.|.|..|++.|. .+|++.
T Consensus 86 ~y~g~vfR~----e~~~-~g~~re~~Q~g~Eiig~~~~~--~daE~i~l~~~~l~-~lg~~~ 139 (261)
T cd00773 86 YYIGPVFRY----ERPQ-KGRYREFYQVGVEIIGSDSPL--ADAEVIALAVEILE-ALGLKD 139 (261)
T ss_pred EEEcCEEec----CCCC-CCCccceEEeceeeeCCCChH--HHHHHHHHHHHHHH-HcCCCc
Confidence 888999997 2211 2322 3446778888885542 13689999999884 678654
No 43
>smart00438 ZnF_NFX Repressor of transcription.
Probab=48.25 E-value=8 Score=26.05 Aligned_cols=11 Identities=45% Similarity=1.337 Sum_probs=8.7
Q ss_pred CCCCCCceeEE
Q psy13352 173 TGPCGPCSEIF 183 (451)
Q Consensus 173 ~GPCGPcsEI~ 183 (451)
.|||+||.+..
T Consensus 12 ~G~C~pC~~~~ 22 (26)
T smart00438 12 PGPCPPCKQXX 22 (26)
T ss_pred CCcCcCccccc
Confidence 48999999654
No 44
>cd00830 KAS_III Ketoacyl-acyl carrier protein synthase III (KASIII) initiates the elongation in type II fatty acid synthase systems. It is found in bacteria and plants. Elongation of fatty acids in the type II systems occurs by Claisen condensation of malonyl-acyl carrier protein (ACP) with acyl-ACP. KASIII initiates this process by specifically using acetyl-CoA over acyl-CoA.
Probab=46.97 E-value=5.6 Score=39.39 Aligned_cols=81 Identities=20% Similarity=0.261 Sum_probs=53.0
Q ss_pred chhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCce-EEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCCCCC
Q psy13352 85 HHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERL-WITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYT 163 (451)
Q Consensus 85 HhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL-~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~~~~ 163 (451)
...++.|.|...+-.+- +...+...++| +..|+.++.+ |+-.+.......+.+.+.+|+|++|+..
T Consensus 206 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~l-~~~g~~~~di~~~~~h~~~~~~~~~~~~~lgl~~~~~~~----------- 272 (320)
T cd00830 206 GDPYLVMDGREVFKFAV-RLMPESIEEAL-EKAGLTPDDIDWFVPHQANLRIIEAVAKRLGLPEEKVVV----------- 272 (320)
T ss_pred cCccEEEcChHHHHHHH-HhhHHHHHHHH-HHcCCCHHHCCEEEECCCCHHHHHHHHHHhCCCHHHhhh-----------
Confidence 34566777776554332 22222333344 5679999887 6666778888888888889999988742
Q ss_pred CCCcccCCCCCCCCCceeEEE
Q psy13352 164 SDNFWQMSDTGPCGPCSEIFY 184 (451)
Q Consensus 164 ~dNfW~~G~~GPCGPcsEI~y 184 (451)
+ +...|+||+|+ +++
T Consensus 273 --~---~~~~Gn~~sas-~~~ 287 (320)
T cd00830 273 --N---LDRYGNTSAAS-IPL 287 (320)
T ss_pred --h---HHhhCcHHHHH-HHH
Confidence 2 23568999888 443
No 45
>PLN02853 Probable phenylalanyl-tRNA synthetase alpha chain
Probab=46.58 E-value=19 Score=39.65 Aligned_cols=23 Identities=17% Similarity=0.478 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSS 26 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~s 26 (451)
.++|+.+-++|.+.|.+.++..|
T Consensus 224 ~~~~~ei~~if~~mGF~e~~~g~ 246 (492)
T PLN02853 224 LKVRQQFRKIFLQMGFEEMPTNN 246 (492)
T ss_pred HHHHHHHHHHHHhCCCEEecCCC
Confidence 57899999999999999996443
No 46
>PF01361 Tautomerase: Tautomerase enzyme; InterPro: IPR004370 4-Oxalocrotonate tautomerase (4-OT) catalyzes the isomerisation of beta,gamma-unsaturated enones to their alpha,beta-isomers. The enzyme is part of a plasmid-encoded pathway, which enables bacteria harbouring the plasmid to use various aromatic hydrocarbons as their sole sources of carbon and energy. The enzyme is a barrel-shaped hexamer, which can be viewed as a trimer of dimers. The hexamer contains a hydrophobic core formed by three beta-sheets and surrounded by three pairs of alpha-helices. Each 4-OT monomer of 62 amino acids has a relatively simple beta-alpha-beta fold as described by the structure of the enzyme from Pseudomonas putida []. The monomer begins with a conserved proline at the start of a beta-strand, followed by an alpha-helix and a 310 helix preceding a second parallel beta-strand, and ends with a beta-hairpin near the C terminus. The dimer results from antiparallel interactions between the beta-sheets and alpha-helices of the two monomers, forming a four-stranded beta-sheet with antiparallel alpha-helices on one side, creating two active sites, one at each end of the beta-sheet. Three dimers further associate to form a hexamer by the interactions of the strands of the C-terminal beta-hairpin loops with the edges of the four-stranded beta-sheets of neighbouring dimers, creating a series of cross-links that stabilise the hexamer Pro-1 of the mature protein functions as the general base while Arg-39 and an ordered water molecule each provide a hydrogen bond to the C-2 oxygen of substrate. Arg-39 plays an additional role in the binding of the C-1 carboxylate group. Arg-11 participates both in substrate binding and in catalysis. It interacts with the C-6 carboxylate group, thereby holding the substrate in place and drawing electron density to the C-5 position. The hydrophobic nature of the active site, which lowers the pKa of Pro-1 and provides a favourable environment for catalysis, is largely maintained by Phe-50. Because several Arg residues located near the active site are not conserved among all members of this family and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.; GO: 0016853 isomerase activity, 0006725 cellular aromatic compound metabolic process; PDB: 4OTA_H 4OTC_G 4OTB_J 2FM7_A 1BJP_B 1S0Y_K 3EJ9_E 3EJ7_K 3EJ3_I 3MB2_A ....
Probab=46.30 E-value=31 Score=26.18 Aligned_cols=29 Identities=17% Similarity=0.227 Sum_probs=22.3
Q ss_pred hHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 102 KYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 102 K~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
|++-++-.-+.+.+.||.|+++++|.+.+
T Consensus 16 K~~l~~~it~~~~~~lg~~~~~i~V~i~E 44 (60)
T PF01361_consen 16 KRELAEAITDAVVEVLGIPPERISVVIEE 44 (60)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCCCeEEEEEEE
Confidence 55666666777888999999999998765
No 47
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=45.50 E-value=33 Score=34.59 Aligned_cols=69 Identities=16% Similarity=-0.026 Sum_probs=49.6
Q ss_pred hhhhhhcCcccCCCCCchHHHHHHHHHHHHHHHhCCCCchhhhhHHHHHHHhh-----hhChhhhhcHH-HHHHHHH
Q psy13352 293 CVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTY-----IIYKELKISVI-KIEEILK 363 (451)
Q Consensus 293 ~~f~IaDGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~-----~~ypeL~~~~~-~I~~ii~ 363 (451)
--|++.|-.-| .|.-.++.+.++-+...+...+.+.|.+.++|..+++.+. ..|||+...++ .+.+++.
T Consensus 231 gp~~~~d~~~~--~g~~~~~~k~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (308)
T PRK06129 231 GPFETIDLNAP--GGVADYAQRYGPMYRRMAAERGQPVPWDGELVARVEAERRAALPLDQLAARQAWRDRRLMALAA 305 (308)
T ss_pred CHHHHHhcccc--ccHHHHHHHHHHHHHhhccccCCCchhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 55778885434 3666677777777777777788888899999999999984 45777777663 3445443
No 48
>KOG2783|consensus
Probab=44.88 E-value=11 Score=40.38 Aligned_cols=34 Identities=29% Similarity=0.395 Sum_probs=22.4
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhHHHHHHHHH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAAR 271 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~pli~~i~~ 271 (451)
--.=-||||||||++|=+-|. ..+|...=+..-+
T Consensus 295 igwafglgLerLAMll~~IpD---iRlfWs~DeRFlk 328 (436)
T KOG2783|consen 295 IGWAFGLGLERLAMLLFDIPD---IRLFWSFDERFLK 328 (436)
T ss_pred eeeeeeccHHHHHHHHhcCcc---hheeeccchHHHH
Confidence 345579999999999977664 4455554444333
No 49
>TIGR00013 taut 4-oxalocrotonate tautomerase family enzyme. 4-oxalocrotonate tautomerase is a homohexamer in which each monomer is very small, at about 62 amino acids. Pro-1 of the mature protein serves as a general base. The enzyme functions in meta-cleavage pathways of aromatic hydrocarbon catabolism. Because several Arg residues located near the active site in the crystal structure of Pseudomonas putida are not conserved among all members of this family, because the literature describes a general role in the isomerization of beta,gamma-unsaturated enones to their alpha,beta-isomers, and because of the presence of fairly distantly related paralogs in Campylobacter jejuni, the family is regarded as not necessarily uniform in function.
Probab=43.36 E-value=37 Score=25.78 Aligned_cols=30 Identities=13% Similarity=0.170 Sum_probs=24.5
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.|.+.||.|++.++|.+.+
T Consensus 16 qK~~l~~~it~~l~~~lg~~~~~v~V~i~e 45 (63)
T TIGR00013 16 QKRQLIEGVTEAMAETLGANLESIVVIIDE 45 (63)
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 366667777788888999999999999865
No 50
>PF01343 Peptidase_S49: Peptidase family S49 peptidase classification.; InterPro: IPR002142 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to MEROPS peptidase family S49 (protease IV family, clan S-). The predicted active site serine for members of this family occurs in a transmembrane domain. The domain defines sequences in viruses, archaea, bacteria and plants. These sequences are variously annotated in the different taxonomic groups, examples are: Viruses: capsid protein Archaea: proteinase IV homolog Bacteria: proteinase IV, sohB, SppA, pfaP, putative protease Plants: SppA, protease IV This group also contains proteins classified as non-peptidase homologues that either have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for the catalytic activity of peptidases. Related proteins, non-peptidase homologs and unclassified S49 members are also to be found in IPR002810 from INTERPRO.; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 3RST_B 3BEZ_D 3BF0_A.
Probab=40.94 E-value=35 Score=31.06 Aligned_cols=67 Identities=15% Similarity=0.112 Sum_probs=47.7
Q ss_pred hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCCCChHHHHH--HHhcCCCCHHhHHHHHHHcCC
Q psy13352 353 ISVIKIEEILKKEEECFRKTLKYGIKILENILLT--KPDKLDGKLAFI--LYDTYGFPIDLTIDICKEHNV 419 (451)
Q Consensus 353 ~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~--~~~~l~g~~af~--LydtyGfP~dlt~eia~e~gi 419 (451)
+.++.+++.+..-.+.|...+.++..+-.+.+++ .+..+++++|.+ |-|..|..-|++..++++.|+
T Consensus 83 ~~r~~~~~~l~~~~~~f~~~Va~~R~~~~~~v~~~~~~~~~~~~~A~~~GLiD~i~~~~~~~~~l~~~~~v 153 (154)
T PF01343_consen 83 EERENLQELLDELYDQFVNDVAEGRGLSPDDVEEIADGGVFTAQQALELGLIDEIGTFDEAIARLAKLAGV 153 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTS-HHHHHCHHCCHEEEHHHHHHTTSSSEETSHHHHHHHHHHHCHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHhhccccHHHHHHcCchhhcCCHHHHHHHHHHHcCC
Confidence 3457899999999999999999988644444443 345677777764 467777777777777766654
No 51
>PRK01964 4-oxalocrotonate tautomerase; Provisional
Probab=40.61 E-value=39 Score=26.04 Aligned_cols=30 Identities=13% Similarity=0.049 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
.|++.++-.-+.|.+.||+|++.++|.+-+
T Consensus 16 qk~~l~~~it~~l~~~lg~p~~~v~V~i~e 45 (64)
T PRK01964 16 KIKNLIREVTEAISATLDVPKERVRVIVNE 45 (64)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 466777777788888999999999998765
No 52
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=39.24 E-value=64 Score=34.85 Aligned_cols=100 Identities=19% Similarity=0.289 Sum_probs=57.5
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCC-CCCc-cccc-ccc-----ccc-cccccCCCCC--------CCCCCcccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDN-DSSL-LFTN-SGM-----VQF-KDVFLGIEKR--------NYLRATSIQRC 66 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~-dptl-lFtn-AGM-----~qF-kp~flG~~~p--------~~~r~~~~QkC 66 (451)
++|-+.+-+||.++|...|..--|.+.. ++.. +|.- +-+ +.| ++++|-+++. ...|+=...+|
T Consensus 137 s~i~~~iR~f~~~~gf~EV~TP~L~~~~~eg~~~~F~v~~~~~~~~~~~~~~~~~L~~Spql~lq~l~~g~~rVf~i~~~ 216 (450)
T PRK03932 137 NTLAQAIHEFFNENGFVWVDTPIITASDCEGAGELFRVTTLDLDFSKDFFGKEAYLTVSGQLYAEAYAMALGKVYTFGPT 216 (450)
T ss_pred HHHHHHHHHHHHHCCCEEecCCceeccCCCCCCCceEeecccccccccccCCCcccccCHHHHHHHHHhccCCeEEeeec
Confidence 4677888899999999988554444311 1110 1211 100 112 3344433321 24677788899
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHh
Q psy13352 67 LRAGGKHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELL 113 (451)
Q Consensus 67 iR~gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~L 113 (451)
.|. -+. .|.||+.=|-||--. +|.|| +|.+..+-+++
T Consensus 217 FR~----E~~----~t~rHl~EFt~lE~e~~~~~~--~~~m~~~e~li 254 (450)
T PRK03932 217 FRA----ENS----NTRRHLAEFWMIEPEMAFADL--EDNMDLAEEML 254 (450)
T ss_pred ccc----CCC----CCccccccccccceEEeccCH--HHHHHHHHHHH
Confidence 998 232 267998888887654 66776 55555544443
No 53
>COG3981 Predicted acetyltransferase [General function prediction only]
Probab=39.12 E-value=25 Score=33.66 Aligned_cols=34 Identities=24% Similarity=0.457 Sum_probs=30.0
Q ss_pred hhcCcccCCCCCchHHHHHHHHHHHHHHHhCCCCc
Q psy13352 297 IIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSI 331 (451)
Q Consensus 297 IaDGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~ 331 (451)
|.=||.||-.|+|| .+.+||-|+..++.||++.-
T Consensus 101 IGY~VrPseR~KGY-A~emLkl~L~~ar~lgi~~V 134 (174)
T COG3981 101 IGYSVRPSERRKGY-AKEMLKLALEKARELGIKKV 134 (174)
T ss_pred ccceeChhhhccCH-HHHHHHHHHHHHHHcCCCeE
Confidence 45578899999999 68999999999999999864
No 54
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=37.83 E-value=17 Score=37.09 Aligned_cols=101 Identities=23% Similarity=0.283 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCC--ccccccc--cccc-cccccCCCCC---------CCCCCccccccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSS--LLFTNSG--MVQF-KDVFLGIEKR---------NYLRATSIQRCLRA 69 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dpt--llFtnAG--M~qF-kp~flG~~~p---------~~~r~~~~QkCiR~ 69 (451)
+.|-+.+-+||.++|...|..--+.+...+. =.|..-. -.-| +|++|-+++. ...|+=...+|.|.
T Consensus 26 s~i~~~ir~ff~~~~f~Ev~tP~l~~~~~~~~~~~F~v~~~~~~~~~~~~~L~~Spql~~k~ll~~g~~~vf~i~~~FR~ 105 (335)
T PF00152_consen 26 SAILQAIREFFDKRGFIEVDTPILTSSTCEGGAEPFSVDSEPGKYFGEPAYLTQSPQLYLKRLLAAGLERVFEIGPCFRN 105 (335)
T ss_dssp HHHHHHHHHHHHHTT-EEE---SEESSSSSSSSCSEEEEESTTEETTEEEEE-SSSHHHHHHHHHTTHSEEEEEEEEE-B
T ss_pred HHHHHHHHHHHHhCCceEEcCceeeccccCccccccccccchhhhcccceecCcChHHHHhhhccccchhhhheecceec
Confidence 4677888899999999988665555532222 2333320 0011 4555644431 24566667999998
Q ss_pred CCCCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHhh
Q psy13352 70 GGKHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLT 114 (451)
Q Consensus 70 gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT 114 (451)
. +. .|.||..=|-||=-. +|.||.. .++.+-+++.
T Consensus 106 E----~~----~~~rHl~EFtmLE~e~a~~~~~~--lm~~~e~li~ 141 (335)
T PF00152_consen 106 E----ES----RTRRHLPEFTMLEWEMAFADYDD--LMDLIEELIK 141 (335)
T ss_dssp S----SS----CBTTBSSEEEEEEEEEETSSHHH--HHHHHHHHHH
T ss_pred c----Cc----ccccchhhhhhhhhccccCcHHH--hHHHHHHHHH
Confidence 2 22 489999888886433 4666643 5555444443
No 55
>TIGR00443 hisZ_biosyn_reg ATP phosphoribosyltransferase, regulatory subunit. Apparant second copies of histidyl-tRNA synthetase, found in Bacillus subtilis, Synechocystis sp., Aquifex aeolicus, and others, are in fact a regulatory subunit of ATP phosphoribosyltransferase, and usually encoded by a gene adjacent to that encoding the catalytic subunit.
Probab=36.10 E-value=76 Score=32.22 Aligned_cols=111 Identities=20% Similarity=0.215 Sum_probs=68.3
Q ss_pred hHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcc-----ccccccccccccccCCC---------------------CCC
Q psy13352 3 SIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLL-----FTNSGMVQFKDVFLGIE---------------------KRN 56 (451)
Q Consensus 3 ~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptll-----FtnAGM~qFkp~flG~~---------------------~p~ 56 (451)
-.+|++.+.+.|+++|...|.+..+-|. +++ ..+..|..|..- .|.. .+.
T Consensus 11 ~~~i~~~l~~~~~~~Gy~~i~tP~le~~---~~~~~~~~~~~~~~~~~~d~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~ 86 (314)
T TIGR00443 11 KEEIERQLQDVFRSWGYQEIITPTLEYL---DTLSAGGGILNEDLFKLFDS-LGRVLGLRPDMTTPIARAVSTRLRDRPL 86 (314)
T ss_pred HHHHHHHHHHHHHHcCCeeccCcchhhH---HHhcccCCcchhceEEEECC-CCCEEeecCcCcHHHHHHHHHhcccCCC
Confidence 3578999999999999999966544442 111 123345555431 0110 011
Q ss_pred CCCCcccccccccCCCCCCCCCCCCC-CCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEE
Q psy13352 57 YLRATSIQRCLRAGGKHNDLENVGYT-NYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWIT 127 (451)
Q Consensus 57 ~~r~~~~QkCiR~gGkhnDldnVG~t-~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vT 127 (451)
..|.+-+.+|.|. +=..-|+. ..+.+-+|.+|.=|.- --.|.|..|++.|. .+|+. .+.+.
T Consensus 87 p~r~~y~g~VfR~-----~~~~~gr~re~~Q~g~Eiig~~~~~--adaEvi~l~~~~l~-~lg~~--~~~i~ 148 (314)
T TIGR00443 87 PLRLCYAGNVFRT-----NESGAGRSREFTQAGVELIGAGGPA--ADAEVIALLIEALK-ALGLK--DFKIE 148 (314)
T ss_pred CeEEEEeceEeec-----CCCcCCCcccccccceEEeCCCCch--hHHHHHHHHHHHHH-HcCCC--CeEEE
Confidence 2366777888896 22223332 4557889999976663 34799999999986 57875 34444
No 56
>PRK12420 histidyl-tRNA synthetase; Provisional
Probab=35.19 E-value=1.3e+02 Score=31.89 Aligned_cols=104 Identities=14% Similarity=0.147 Sum_probs=63.8
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccc--c------cccccccccccCCC-------CC------------C
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFT--N------SGMVQFKDVFLGIE-------KR------------N 56 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFt--n------AGM~qFkp~flG~~-------~p------------~ 56 (451)
..|++++.+.|+++|...|....+-|. +++.. + -.|..|.+- .|.. ++ +
T Consensus 22 ~~i~~~l~~~f~~~Gy~~i~tP~lE~~---~~~~~~~~~~~~~~~~~~~~~D~-~g~~l~LRpD~T~~iaR~va~~~~~~ 97 (423)
T PRK12420 22 NKIKRALEDVFERYGCKPLETPTLNMY---ELMSSKYGGGDEILKEIYTLTDQ-GKRDLALRYDLTIPFAKVVAMNPNIR 97 (423)
T ss_pred HHHHHHHHHHHHHcCCEeccccccchH---HHHhcccCCCcccccceEEEecC-CCceecccccccHHHHHHHHhCcCCC
Confidence 578899999999999999966555452 11111 0 114444331 1210 01 1
Q ss_pred C-CCCcccccccccCCCCCCCCCCCCC-CCchhhhhhhccccccccchHHHHHHHHHHhhhhcCC
Q psy13352 57 Y-LRATSIQRCLRAGGKHNDLENVGYT-NYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGL 119 (451)
Q Consensus 57 ~-~r~~~~QkCiR~gGkhnDldnVG~t-~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl 119 (451)
. -|...+.+|.|. +=..-|+. -.+..-||..|.=|.- --.|.|..|+|.|. .||+
T Consensus 98 ~p~r~~y~g~vfR~-----~~~~~gr~rE~~Q~g~EiiG~~~~~--adaEvi~la~~~l~-~lg~ 154 (423)
T PRK12420 98 LPFKRYEIGKVFRD-----GPIKQGRFREFIQCDVDIVGVESVM--AEAELMSMAFELFR-RLNL 154 (423)
T ss_pred CCeeEEEEcceECC-----CCCCCCccceeEECCeeeECCCCCc--ccHHHHHHHHHHHH-HCCC
Confidence 1 156677889996 22233444 3347779999965553 34899999999984 7888
No 57
>TIGR00457 asnS asparaginyl-tRNA synthetase. In a multiple sequence alignment of representative asparaginyl-tRNA synthetases (asnS), archaeal/eukaryotic type aspartyl-tRNA synthetases (aspS_arch), and bacterial type aspartyl-tRNA synthetases (aspS_bact), there is a striking similarity between asnS and aspS_arch in gap pattern and in sequence, and a striking divergence of aspS_bact. Consequently, a separate model was built for each of the three groups. This model, asnS, represents asparaginyl-tRNA synthetases from the three domains of life. Some species lack this enzyme and charge tRNA(asn) by misacylation with Asp, followed by transamidation of Asp to Asn.
Probab=34.94 E-value=19 Score=38.90 Aligned_cols=29 Identities=24% Similarity=0.313 Sum_probs=24.2
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
++=--|||+|||++.+-|.++.=|+-+|.
T Consensus 417 PhgG~GiGieRlvm~l~g~~~Irdv~~FP 445 (453)
T TIGR00457 417 PHSGFGLGFERLLAYITGLENIRDAIPFP 445 (453)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 66678999999999999999977775553
No 58
>cd00491 4Oxalocrotonate_Tautomerase 4-Oxalocrotonate Tautomerase: Catalyzes the isomerization of unsaturated ketones. The structure is a homohexamer that is arranged as a trimer of dimers. The hexamer contains six active sites, each formed by residues from three monomers, two from one dimer and the third from a neighboring monomer. Each monomer is a beta-alpha-beta fold with two small beta strands at the C-terminus that fold back on themselves. A pair of monomers form a dimer with two-fold symmetry, consisting of a 4-stranded beta sheet with two helices on one side and two additional small beta strands at each end. The dimers are assembled around a 3-fold axis of rotation to form a hexamer, with the short beta strands from each dimer contacting the neighboring dimers.
Probab=34.67 E-value=55 Score=24.29 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-.+-.-+.|.+.+|.|++.++|.+.+
T Consensus 15 qk~~l~~~i~~~l~~~~g~~~~~v~V~i~e 44 (58)
T cd00491 15 QKRELIERVTEAVSEILGAPEATIVVIIDE 44 (58)
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 355566666677888899999999998754
No 59
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=34.05 E-value=19 Score=37.08 Aligned_cols=95 Identities=22% Similarity=0.366 Sum_probs=59.9
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc--------cccccCCCCC---------CCCCCcccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF--------KDVFLGIEKR---------NYLRATSIQRC 66 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF--------kp~flG~~~p---------~~~r~~~~QkC 66 (451)
++|-+.+-+||.++|..-|.+--|++...+ |+...| ++.+|-+++. ...|+=...+|
T Consensus 12 s~i~~~iR~ff~~~gf~EV~TP~L~~~~~~------~~~~~f~~~~~~~~~~~yL~~Spql~~k~ll~~g~~~vf~i~~~ 85 (329)
T cd00775 12 SKIISYIRKFLDDRGFLEVETPMLQPIAGG------AAARPFITHHNALDMDLYLRIAPELYLKRLIVGGFERVYEIGRN 85 (329)
T ss_pred HHHHHHHHHHHHHCCCEEEECCccccCCCC------ccceeEEeccCCCCcceeeccCHHHHHHHHHhcCCCcEEEEecc
Confidence 467788899999999998866555553222 222223 3334433321 24677778899
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhcc-ccccccchHHHHHHHHHHhhh
Q psy13352 67 LRAGGKHNDLENVGYTNYHHTFFQMLGN-WSFGDYFKYESLQWTWELLTQ 115 (451)
Q Consensus 67 iR~gGkhnDldnVG~t~rHhTfFEMLGN-fSFGdYfK~eaI~~awe~LT~ 115 (451)
.|. . ++ +.||++=|-||=- .+|.+| +|.+..+=+++..
T Consensus 86 FR~----E---~~--~~rHl~EFt~le~e~~~~~~--~~~m~~~e~li~~ 124 (329)
T cd00775 86 FRN----E---GI--DLTHNPEFTMIEFYEAYADY--NDMMDLTEDLFSG 124 (329)
T ss_pred ccC----C---CC--CCCCCCceEEEEEeeecCCH--HHHHHHHHHHHHH
Confidence 998 2 33 3699999999744 456666 5566666555543
No 60
>PRK03932 asnC asparaginyl-tRNA synthetase; Validated
Probab=33.64 E-value=21 Score=38.55 Aligned_cols=29 Identities=24% Similarity=0.320 Sum_probs=24.6
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
++=-.|||+|||++.+-|..|.=|+-+|.
T Consensus 414 P~gG~GiGidRL~m~l~g~~nIrdv~~FP 442 (450)
T PRK03932 414 PHSGFGLGFERLVAYITGLDNIRDVIPFP 442 (450)
T ss_pred CCCcEeehHHHHHHHHhCCCcHhhhccCc
Confidence 77888999999999999999977765543
No 61
>PLN02850 aspartate-tRNA ligase
Probab=33.46 E-value=19 Score=39.78 Aligned_cols=29 Identities=31% Similarity=0.401 Sum_probs=24.5
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
+|=-.|+|||||++.+-|.++.=|+-+|.
T Consensus 494 PhgG~GiGlERLvM~l~g~~nIr~v~~FP 522 (530)
T PLN02850 494 PHGGFGVGLERVVMLFCGLNNIRKTSLFP 522 (530)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEeecC
Confidence 45678999999999999999987776654
No 62
>PRK12444 threonyl-tRNA synthetase; Reviewed
Probab=33.45 E-value=5.4e+02 Score=28.93 Aligned_cols=123 Identities=15% Similarity=0.160 Sum_probs=68.2
Q ss_pred HHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccc-cccc-----------cccC-CCCC-----------C----
Q psy13352 5 EICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMV-QFKD-----------VFLG-IEKR-----------N---- 56 (451)
Q Consensus 5 eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~-qFkp-----------~flG-~~~p-----------~---- 56 (451)
+|-+.+.+.+.+.|+..|-.-.+++. -+|.-+|-. .|++ +.|- +..| .
T Consensus 279 ~i~~~~~~~~~~~G~~~v~tP~l~~~----~l~~~sG~~~~~~~emy~~d~~~~~~~LrP~~~~~~~~~~~~~~~sy~~L 354 (639)
T PRK12444 279 ELEAFLREIQKEYNYQEVRTPFMMNQ----ELWERSGHWDHYKDNMYFSEVDNKSFALKPMNCPGHMLMFKNKLHSYREL 354 (639)
T ss_pred HHHHHHHHHHHHcCCEEEECCccCCH----HHHhhcCChhhhhhhcCeecCCCcEEEEccCCCHHHHHHHhCcccChhhC
Confidence 46667777778889988876666652 222223311 1111 1110 0000 1
Q ss_pred CCCCcccccccccCCCCCCCCCC--CCCCCchhhhhhhcccccccc--chH---HHHHHHHHHhhhhcCCCCCceEEEE-
Q psy13352 57 YLRATSIQRCLRAGGKHNDLENV--GYTNYHHTFFQMLGNWSFGDY--FKY---ESLQWTWELLTQIYGLSIERLWITV- 128 (451)
Q Consensus 57 ~~r~~~~QkCiR~gGkhnDldnV--G~t~rHhTfFEMLGNfSFGdY--fK~---eaI~~awe~LT~~lgl~~~rL~vTv- 128 (451)
.-|+....+|.|- ....- |....|. |.|.+-++|+.= -.+ +.+.++.+++ +.||+| =++-+..
T Consensus 355 P~r~~~~g~~fR~-----E~~~~~~Gl~R~re--F~q~d~~~f~~~~~~~~e~~~~~~~~~~i~-~~lgl~-~~~~~~~r 425 (639)
T PRK12444 355 PIRMCEFGQVHRH-----EFSGALNGLLRVRT--FCQDDAHLFVTPDQIEDEIKSVMAQIDYVY-KTFGFE-YEVELSTR 425 (639)
T ss_pred CceeEEeccccCC-----CCCcCCcCcceeee--eEEccEEEECCHHHHHHHHHHHHHHHHHHH-HHcCCc-EEEEEECC
Confidence 1356667789995 33222 4333333 789999999842 223 4788888988 679995 3333221
Q ss_pred ---eCCcHHHHHHHH
Q psy13352 129 ---YITDDETYNIWT 140 (451)
Q Consensus 129 ---~~~D~Ea~~iW~ 140 (451)
|-+|+|..+.|.
T Consensus 426 ~~~~~G~~e~~~~~~ 440 (639)
T PRK12444 426 PEDSMGDDELWEQAE 440 (639)
T ss_pred ccccCCCHHHHHHHH
Confidence 235777777776
No 63
>PLN02221 asparaginyl-tRNA synthetase
Probab=32.91 E-value=1.1e+02 Score=34.56 Aligned_cols=46 Identities=17% Similarity=0.145 Sum_probs=33.7
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHH
Q psy13352 57 YLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWEL 112 (451)
Q Consensus 57 ~~r~~~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~ 112 (451)
..|+=...+|.|+- -..|.||++=|-||--- +|.|| ++.+..+=++
T Consensus 326 l~rVfeIgP~FRAE--------~s~T~RHL~EFtmlE~Emaf~d~--~dvm~l~E~l 372 (572)
T PLN02221 326 LSSVYTFGPTFRAE--------NSHTSRHLAEFWMVEPEIAFADL--EDDMNCAEAY 372 (572)
T ss_pred cCCeEEEccceecC--------CCCCCcccccccceeeeeecCCH--HHHHHHHHHH
Confidence 57888899999982 22489999999998654 77887 5565555444
No 64
>PRK06462 asparagine synthetase A; Reviewed
Probab=32.78 E-value=21 Score=36.93 Aligned_cols=102 Identities=17% Similarity=0.123 Sum_probs=55.2
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccc-cccccccc------cccccCCCCC--------CCCCCcccccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLF-TNSGMVQF------KDVFLGIEKR--------NYLRATSIQRCLR 68 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllF-tnAGM~qF------kp~flG~~~p--------~~~r~~~~QkCiR 68 (451)
++|-+.+-+||.++|...|..=-+.+..++-+-- .+-|...| ++++|-+++. ...|+=...+|.|
T Consensus 34 s~i~~~iR~ff~~~~f~EV~TP~l~~~~~~~~~~g~~~~~~~~~~~~~~~~~yL~~Spql~k~ll~~g~~rVfeI~p~FR 113 (335)
T PRK06462 34 SSILRYTREFLDGRGFVEVLPPIISPSTDPLMGLGSDLPVKQISIDFYGVEYYLADSMILHKQLALRMLGKIFYLSPNFR 113 (335)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEecCCCCCCCccccCCccccccccCCCceeeccCHHHHHHHHHhhcCcEEEEecccc
Confidence 4677888899999998877433333322221100 00001111 2233322211 2467778899999
Q ss_pred cCCCCCCCCCCCC-CCCchhhhhhhccc-cccccchHHHHHHHHHHhh
Q psy13352 69 AGGKHNDLENVGY-TNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLT 114 (451)
Q Consensus 69 ~gGkhnDldnVG~-t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT 114 (451)
.. .++. +.||..=|-||=-. +|.|| ++.++.+=+++.
T Consensus 114 ~E-------~~~~~~~rHl~EFtmlE~e~~~~d~--~dlm~~~e~lv~ 152 (335)
T PRK06462 114 LE-------PVDKDTGRHLYEFTQLDIEIEGADL--DEVMDLIEDLIK 152 (335)
T ss_pred CC-------CCCCCCCCCCCchheeeehhhcCCH--HHHHHHHHHHHH
Confidence 83 2331 27999988887655 45465 455555554443
No 65
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=32.12 E-value=26 Score=37.96 Aligned_cols=78 Identities=24% Similarity=0.287 Sum_probs=54.5
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCC--Cccccccccccccc-cccCCCCC--------CCCCCcccccccccCCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDS--SLLFTNSGMVQFKD-VFLGIEKR--------NYLRATSIQRCLRAGGK 72 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dp--tllFtnAGM~qFkp-~flG~~~p--------~~~r~~~~QkCiR~gGk 72 (451)
+.|.+.|-+||.++|..-|.+-=+++...+ +-||-. ..|.. .||.++.. ...|+=+..+++|+
T Consensus 138 s~i~~a~~eff~~~gF~eV~tP~i~~~~~EGg~elF~v---~yf~~~a~LtqS~QLyke~~~~al~rVf~igP~FRA--- 211 (435)
T COG0017 138 SSILRAIREFFYENGFTEVHTPIITASATEGGGELFKV---DYFDKEAYLTQSPQLYKEALAAALERVFTIGPTFRA--- 211 (435)
T ss_pred HHHHHHHHHHHHhCCcEEecCceEeccCCCCCceeEEE---eecCcceEEecCHHHHHHHHHHHhCceEEecCceec---
Confidence 467889999999999999887666664332 334432 23433 56655532 36889999999999
Q ss_pred CCCCCCCCCCCCchhhhhhh
Q psy13352 73 HNDLENVGYTNYHHTFFQML 92 (451)
Q Consensus 73 hnDldnVG~t~rHhTfFEML 92 (451)
.--.|.||++=|-|+
T Consensus 212 -----E~s~T~RHL~EF~~l 226 (435)
T COG0017 212 -----EKSNTRRHLSEFWML 226 (435)
T ss_pred -----CCCCCcchhhhHhee
Confidence 222399999998775
No 66
>PRK02220 4-oxalocrotonate tautomerase; Provisional
Probab=31.83 E-value=60 Score=24.51 Aligned_cols=30 Identities=7% Similarity=-0.027 Sum_probs=24.1
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
.|++-++-.-+.|.+.+|+|++.++|.+-+
T Consensus 16 qk~~l~~~it~~l~~~~~~p~~~v~V~i~e 45 (61)
T PRK02220 16 QLKALVKDVTAAVSKNTGAPAEHIHVIINE 45 (61)
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 466667777777888999999999998754
No 67
>PRK06462 asparagine synthetase A; Reviewed
Probab=31.76 E-value=1.3e+02 Score=31.08 Aligned_cols=29 Identities=24% Similarity=0.352 Sum_probs=23.5
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
++=--|+|+|||++.+-|..+.=|+-+|.
T Consensus 299 p~~G~glGidRLvm~~~g~~~Irdv~~FP 327 (335)
T PRK06462 299 PSAGFGIGVERLTRYICGLRHIREVQPFP 327 (335)
T ss_pred CCCeEEEcHHHHHHHHcCCCchheeeecc
Confidence 56678999999999999999976664443
No 68
>PTZ00401 aspartyl-tRNA synthetase; Provisional
Probab=31.54 E-value=23 Score=39.46 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=24.4
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
+|=-.|+|||||++.+-|..+.=++-+|.
T Consensus 514 PhgG~GiGlERLvM~~lg~~nIR~v~lFP 542 (550)
T PTZ00401 514 PHGGFGVGLERVVMLYLGLSNVRLASLFP 542 (550)
T ss_pred CCceEEEhHHHHHHHHhCCCcHheeecCC
Confidence 55578999999999999999987776654
No 69
>PRK09537 pylS pyrolysyl-tRNA synthetase; Reviewed
Probab=31.51 E-value=1.8e+02 Score=31.62 Aligned_cols=170 Identities=20% Similarity=0.289 Sum_probs=97.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCC---------C---Ccccccccccccccccc-C--------CC-CCCCCCCc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDND---------S---SLLFTNSGMVQFKDVFL-G--------IE-KRNYLRAT 61 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~d---------p---tllFtnAGM~qFkp~fl-G--------~~-~p~~~r~~ 61 (451)
++|.+...+||...|...|-+..|++... . +.+|....-..++|-.+ + .. .+..-|+.
T Consensus 207 s~Le~aIR~~f~~~GF~EV~TPtLt~ee~~e~~g~~~g~~i~~~my~ideel~LRpsLtPsLlr~la~n~k~~~~P~RIF 286 (417)
T PRK09537 207 GKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPGLYNYLRKLDRILPDPIKIF 286 (417)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecHHHHHHhCCCCcccchhhheeeCCceEehhhhHHHHHHHHHhhhhcccCCeeEE
Confidence 57788888999999999999988875310 0 01111111111121111 0 00 11113577
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhhhcccccccc-chHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHH
Q psy13352 62 SIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDY-FKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWT 140 (451)
Q Consensus 62 ~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNfSFGdY-fK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~ 140 (451)
...+|.|. | ..| ..|..=|+|+|--..|+- .-.|+...+-++|. .|||+ | ++-
T Consensus 287 EIG~VFR~-----E--~~g--~~hlrEf~Ql~~~iiGs~~~f~dL~~lleeLL~-~LGI~----f-~i~----------- 340 (417)
T PRK09537 287 EIGPCYRK-----E--SDG--KEHLEEFTMVNFCQMGSGCTRENLENIIDDFLK-HLGID----Y-EII----------- 340 (417)
T ss_pred EEeceEec-----C--CCC--CCCcceEEEEEEEEeCCchHHHHHHHHHHHHHH-HCCCC----c-EEe-----------
Confidence 78899996 4 122 457777888887777742 23567777777774 67885 2 210
Q ss_pred hhcCCCCCceeecCCCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccC
Q psy13352 141 NKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEI 220 (451)
Q Consensus 141 ~~~Gv~~~rI~~~g~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~ 220 (451)
. ++ + +. =|+|-+|.++ + .||++-+|=+-+-..
T Consensus 341 ---------------s--------~~-~-fi----~GR~adI~~g-------~------------~el~~G~fGEi~VLe 372 (417)
T PRK09537 341 ---------------G--------DN-C-MV----YGDTIDIMHG-------D------------LELSSAVVGPIPLDR 372 (417)
T ss_pred ---------------c--------CC-c-ce----ecCeEEEEeC-------C------------EEEeeEEEEEEehhh
Confidence 0 12 1 11 1567788752 1 455554554442111
Q ss_pred CCCCCCcccccCCCCccccCchHHHHHHHHhcCCC
Q psy13352 221 NPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYN 255 (451)
Q Consensus 221 d~~~G~~~l~~Lp~k~IDTGmGLERl~~vlQg~~s 255 (451)
=--++.+++=-|+|||||+++..|..+
T Consensus 373 --------~fGI~~PVva~EIdLerL~~~~~g~~~ 399 (417)
T PRK09537 373 --------EWGIDKPWIGAGFGLERLLKVKHGYKN 399 (417)
T ss_pred --------hcCCCCceEEEEEeHHHHHHHHhCcHH
Confidence 122566789999999999999999655
No 70
>cd00775 LysRS_core Lys_tRNA synthetase (LysRS) class II core domain. Class II LysRS is a dimer which attaches a lysine to the 3' OH group of ribose of the appropriate tRNA. Its assignment to class II aaRS is based upon its structure and the presence of three characteristic sequence motifs in the core domain. It is found in eukaryotes as well as some prokaryotes and archaea. However, LysRS belongs to class I aaRS's in some prokaryotes and archaea. The catalytic core domain is primarily responsible for the ATP-dependent formation of the enzyme bound aminoacyl-adenylate.
Probab=31.44 E-value=1.3e+02 Score=31.18 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=23.0
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhh
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLF 262 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF 262 (451)
+|=-.|+|+|||++.+-|.++.=|+-.|
T Consensus 297 p~~G~glGleRL~m~~~g~~~Irdv~~F 324 (329)
T cd00775 297 PTGGLGIGIDRLVMLLTDSNSIRDVILF 324 (329)
T ss_pred CCCcEEecHHHHHHHHcCCCcHHhcccC
Confidence 4667899999999999999997666444
No 71
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=31.21 E-value=22 Score=39.89 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.1
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
++---|||+|||++.+-|.++.=|+-+|.
T Consensus 550 PhgGfGLGiERLvm~ltGl~nIRDvi~FP 578 (586)
T PTZ00425 550 PHAGFGLGFERLIMLVTGVDNIKDTIPFP 578 (586)
T ss_pred CCceEEEcHHHHHHHHcCCCchheEEECc
Confidence 67788999999999999999988876654
No 72
>PRK05963 3-oxoacyl-(acyl carrier protein) synthase II; Reviewed
Probab=30.50 E-value=28 Score=34.93 Aligned_cols=75 Identities=9% Similarity=0.141 Sum_probs=46.4
Q ss_pred hhhh-hccccccccchHHHHHHHHHHhhhhcCCCCCce-EEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCCCCCCC
Q psy13352 88 FFQM-LGNWSFGDYFKYESLQWTWELLTQIYGLSIERL-WITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSD 165 (451)
Q Consensus 88 fFEM-LGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL-~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~~~~~d 165 (451)
++.| -|..+|..+. +.+.-+++-+.+..|+.++.+ |+-.+....-..+-+.+.+|+|+++++ .
T Consensus 212 ~~~~~~~~~~~~~~~--~~~~~~~~~~L~~~gl~~~did~~~~h~~~~~~~~~~~~~l~l~~~k~~-------------~ 276 (326)
T PRK05963 212 LMTMQDGRAVFTEAV--RMMSGASQNVLASAAMTPQDIDRFFPHQANARIVDKVCETIGIPRAKAA-------------S 276 (326)
T ss_pred ceEecCCHHHHHHHH--HHHHHHHHHHHHHcCCCHHHCCEEEeCCCCHHHHHHHHHHcCCCHHHhh-------------h
Confidence 3443 4555553322 123334443345679999887 455567776777777788999998875 3
Q ss_pred CcccCCCCCCCCCce
Q psy13352 166 NFWQMSDTGPCGPCS 180 (451)
Q Consensus 166 NfW~~G~~GPCGPcs 180 (451)
|++ ..|+||.+|
T Consensus 277 ~l~---~~Gn~~sas 288 (326)
T PRK05963 277 TLE---TYGNSSAAT 288 (326)
T ss_pred hHH---hhCcHHHHH
Confidence 555 446888776
No 73
>PLN02603 asparaginyl-tRNA synthetase
Probab=30.38 E-value=24 Score=39.40 Aligned_cols=30 Identities=23% Similarity=0.288 Sum_probs=25.3
Q ss_pred CCccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 234 KYCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 234 ~k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
.++---|||+|||++.+-|..|+=|+-+|.
T Consensus 528 pPhgGfGlG~ERLvm~ltg~~nIRdvi~FP 557 (565)
T PLN02603 528 VPHAGFGLGFERLVQFATGIDNIRDAIPFP 557 (565)
T ss_pred CCCceeEEcHHHHHHHHhCCCchhheeecc
Confidence 367788999999999999999987775554
No 74
>COG0751 GlyS Glycyl-tRNA synthetase, beta subunit [Translation, ribosomal structure and biogenesis]
Probab=30.28 E-value=6.5e+02 Score=29.25 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=48.0
Q ss_pred cceEEeechhhhhhhhhhcCcccCCCCCchHHHHHHHHHHHHHHHhCCCCchhhhhHHHHHHHh
Q psy13352 281 NSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNT 344 (451)
Q Consensus 281 ~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~Lv~~vi~~m 344 (451)
.+.=.+||-+-|++=+.+=|.+|+.++--|=|||--==++|.....+++-+ |.+|+...+..+
T Consensus 450 g~~valADKLDTLvg~F~iG~iPtGSkDPyALRRaAlGiirIi~~~~l~l~-l~~ll~~~~~~~ 512 (691)
T COG0751 450 GAVVALADKLDTLVGFFGIGLIPTGSKDPYALRRAALGILRIILEKNLDLD-LEELLDKAVASF 512 (691)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcCCCCCcHHHHHHHhHHHHHHHHhCCCCC-HHHHHHHHHHHh
Confidence 456678999999998888899999999999999877777777665566655 356666655433
No 75
>PLN02532 asparagine-tRNA synthetase
Probab=30.00 E-value=25 Score=39.91 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=25.0
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
+|=--|||+|||++.+-|.++.=|+-+|.
T Consensus 597 PHgGfGLG~ERLvm~ltGl~nIRDvi~FP 625 (633)
T PLN02532 597 KHSGFSLGFELMVLFATGLPDVRDAIPFP 625 (633)
T ss_pred CCeEEEEhHHHHHHHHhCCCchheEeecC
Confidence 67788999999999999999988776554
No 76
>PLN02221 asparaginyl-tRNA synthetase
Probab=29.68 E-value=24 Score=39.44 Aligned_cols=30 Identities=20% Similarity=0.243 Sum_probs=24.7
Q ss_pred CCccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 234 KYCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 234 ~k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
-+|---|||+|||++.+-|.++.=|+-+|.
T Consensus 535 pPh~G~GlGiERLvm~l~g~~nIRdvi~FP 564 (572)
T PLN02221 535 VKHCGFGLGFERMILFATGIDNIRDVIPFP 564 (572)
T ss_pred CCCceEEEeHHHHHHHHcCCCchheEeecC
Confidence 356678999999999999999987775553
No 77
>PRK12295 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=29.65 E-value=1.1e+02 Score=32.37 Aligned_cols=107 Identities=15% Similarity=0.152 Sum_probs=65.6
Q ss_pred ChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccc------cccccccc----------ccccc--------CCCCCCC
Q psy13352 2 KSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLF------TNSGMVQF----------KDVFL--------GIEKRNY 57 (451)
Q Consensus 2 ~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllF------tnAGM~qF----------kp~fl--------G~~~p~~ 57 (451)
...+|.+++.+-|+++|...|....+-+.+ ++. +...|..| .|-++ -...+..
T Consensus 6 ~~~~i~~~i~~~f~~~Gy~~I~tP~lE~~e---~~~~~~g~~~~~~~~~f~D~~G~~l~LRpD~T~piaR~~~~~~~~~p 82 (373)
T PRK12295 6 ASAAAAEALLASFEAAGAVRVDPPILQPAE---PFLDLSGEDIRRRIFVTSDENGEELCLRPDFTIPVCRRHIATAGGEP 82 (373)
T ss_pred hHHHHHHHHHHHHHHcCCEEeeCCccccHH---HhhhccCchhhcceEEEECCCCCEEeeCCCCcHHHHHHHHHcCCCCC
Confidence 457899999999999999999665554421 111 11223333 22111 0011222
Q ss_pred CCCcccccccccCCCCCCCCCCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCC
Q psy13352 58 LRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120 (451)
Q Consensus 58 ~r~~~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~ 120 (451)
.|.+-+++|.|. + .-...-.|+.-||.+|.-+-- +--.|.|..|++.|. .+|++
T Consensus 83 ~R~~Y~g~VfR~-----~--~gr~rEf~Q~GvEiiG~~~~~-~aDaEvi~l~~~~L~-~lgl~ 136 (373)
T PRK12295 83 ARYAYLGEVFRQ-----R--RDRASEFLQAGIESFGRADPA-AADAEVLALALEALA-ALGPG 136 (373)
T ss_pred eEEEEEccEEEC-----C--CCCCCcceEeeEEeeCCCCCc-cchHHHHHHHHHHHH-HcCCC
Confidence 367778899997 2 222335567889999965311 225799999999884 67886
No 78
>PLN02502 lysyl-tRNA synthetase
Probab=29.27 E-value=26 Score=39.07 Aligned_cols=92 Identities=21% Similarity=0.313 Sum_probs=53.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccc--------ccccCCCCC---------CCCCCcccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFK--------DVFLGIEKR---------NYLRATSIQRC 66 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFk--------p~flG~~~p---------~~~r~~~~QkC 66 (451)
+.|-+.+-+||.++|..-|..=-|.+. . ..|+--+|+ +.+|-+++. ...|+=..-+|
T Consensus 233 s~i~~~iR~fl~~~gF~EVeTPiL~~~-~-----gGA~a~pF~t~~n~~~~~~yL~~Spel~lK~L~v~g~~rVfeIg~~ 306 (553)
T PLN02502 233 AKIISYIRRFLDDRGFLEVETPMLNMI-A-----GGAAARPFVTHHNDLNMDLYLRIATELHLKRLVVGGFERVYEIGRQ 306 (553)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecc-C-----CCccccceeeecccCCcceeeecCHHHHHHHHHHhccCCEEEEcCe
Confidence 356677889999999888744333221 1 122222232 223322221 24677778899
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhcc-ccccccchHHHHHHHHHH
Q psy13352 67 LRAGGKHNDLENVGYTNYHHTFFQMLGN-WSFGDYFKYESLQWTWEL 112 (451)
Q Consensus 67 iR~gGkhnDldnVG~t~rHhTfFEMLGN-fSFGdYfK~eaI~~awe~ 112 (451)
.|.. .+ +.||..=|-||=- ++|.|| ++.++.+=++
T Consensus 307 FRnE-------~~--~~rH~pEFtmlE~y~a~~d~--~dlm~~~E~l 342 (553)
T PLN02502 307 FRNE-------GI--STRHNPEFTTCEFYQAYADY--NDMMELTEEM 342 (553)
T ss_pred eeCC-------CC--CCccccceeehhhhhhcCCH--HHHHHHHHHH
Confidence 9972 23 3499999999877 478887 3344443333
No 79
>PRK09350 poxB regulator PoxA; Provisional
Probab=29.22 E-value=31 Score=35.20 Aligned_cols=22 Identities=18% Similarity=0.374 Sum_probs=18.6
Q ss_pred CccccCchHHHHHHHHhcCCCc
Q psy13352 235 YCVDTGMGLERLASILQNVYNN 256 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~sn 256 (451)
+|=-.|+|+|||++.+-|.++.
T Consensus 282 p~~G~giGidRL~m~~~g~~~I 303 (306)
T PRK09350 282 DCSGVALGVDRLIMLALGAESI 303 (306)
T ss_pred CCCceEecHHHHHHHHcCCCCc
Confidence 4556799999999999998875
No 80
>COG0104 PurA Adenylosuccinate synthase [Nucleotide transport and metabolism]
Probab=29.19 E-value=58 Score=35.25 Aligned_cols=74 Identities=19% Similarity=0.174 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHhCCCC--chhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q psy13352 313 RRIIRRAIRYGYKLGQNS--IFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLT 386 (451)
Q Consensus 313 RrilRRa~r~~~~lg~~~--~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~ 386 (451)
=|+.||++|.+.++..+. ..|.++++..-..+...|-.-....+.|.+-+..--+++..-+.....++++++++
T Consensus 140 DKv~R~giRv~DL~d~~~l~~kle~~~~~~n~~l~~~y~~~~~~~~~~~~~~~~~~~~l~~~v~D~~~~l~~a~~~ 215 (430)
T COG0104 140 DKVARRGIRVGDLLDPETLREKLERLLEYKNFQLVKYYGAEAVDFEDILDEYYEYAERLKPYVTDVSVLLNDALDA 215 (430)
T ss_pred hhHhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHc
Confidence 578999999998865431 23444454444455555554444566777777777888888888888888888876
No 81
>PRK12445 lysyl-tRNA synthetase; Reviewed
Probab=29.13 E-value=26 Score=38.53 Aligned_cols=84 Identities=18% Similarity=0.328 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCcc--CCC-------------CCccccccccccccccccCCCCCCCCCCcccccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIP--DND-------------SSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLR 68 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp--~~d-------------ptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR 68 (451)
+.|-+.+-+||.++|..-|..--|.+ -.. ..+++..|..-..|-...| ...|+=..-||.|
T Consensus 188 s~i~~~iR~f~~~~gFiEVeTPiL~~~~gGa~a~pF~t~~~~~~~~~yL~~SpELylKrlivg----G~~rVfeIg~~FR 263 (505)
T PRK12445 188 SKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITHHNALDLDMYLRIAPELYLKRLVVG----GFERVFEINRNFR 263 (505)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCeeEecCCCCcccceecccccCCcceeeecCHHHHHHHHHhc----cCCcEEEEehhcc
Confidence 45667788999999988875433322 111 1122222222222221111 2467777889999
Q ss_pred cCCCCCCCCCCCCCCCchhhhhhhccc-ccccc
Q psy13352 69 AGGKHNDLENVGYTNYHHTFFQMLGNW-SFGDY 100 (451)
Q Consensus 69 ~gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdY 100 (451)
.. + .|.||..=|-||=-. +|.||
T Consensus 264 nE----~-----~~~rH~pEFTmlE~y~a~~d~ 287 (505)
T PRK12445 264 NE----G-----ISVRHNPEFTMMELYMAYADY 287 (505)
T ss_pred CC----C-----CCCCcCcccceeeeeeecCCH
Confidence 72 2 368999999998443 66777
No 82
>PF10440 WIYLD: Ubiquitin-binding WIYLD domain; InterPro: IPR018848 This entry represents a presumed domain which has been predicted to contain three alpha helices. It was named the WIYLD domain based on the pattern of the ost conserved residues []. This domain appears to be specific to plant SET-domain proteins. ; GO: 0018024 histone-lysine N-methyltransferase activity
Probab=28.86 E-value=1.8e+02 Score=23.67 Aligned_cols=34 Identities=18% Similarity=0.085 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhCCCCchhhhhHHHHHHHhhhhCh
Q psy13352 316 IRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYK 349 (451)
Q Consensus 316 lRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~yp 349 (451)
+..|+.+.+.||++..-....+..+.+.++.-++
T Consensus 11 ~daA~dam~~lG~~~~~v~~vl~~LL~lY~~nW~ 44 (65)
T PF10440_consen 11 IDAALDAMRQLGFSKKQVRPVLKNLLKLYDGNWE 44 (65)
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCch
Confidence 5789999999999976444444444444443333
No 83
>PRK12292 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=28.68 E-value=1.3e+02 Score=31.73 Aligned_cols=106 Identities=20% Similarity=0.248 Sum_probs=65.8
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccc------cccccccccccccCCC---------------------CCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLF------TNSGMVQFKDVFLGIE---------------------KRN 56 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllF------tnAGM~qFkp~flG~~---------------------~p~ 56 (451)
..|++.+.+.|+++|...|....+=+. +++- ++.-|..|.+-..|.. .+.
T Consensus 21 ~~i~~~l~~~f~~~Gy~~i~tP~lE~~---e~~~~~~g~~~~~~~~~f~d~~~g~~l~LRpD~T~~iaR~~a~~~~~~~~ 97 (391)
T PRK12292 21 EEIRRRLLDLFRRWGYEEVITPTLEYL---DTLLAGGGAILDLRTFKLVDQLSGRTLGLRPDMTAQIARIAATRLANRPG 97 (391)
T ss_pred HHHHHHHHHHHHHcCCceeeCcchhhH---HHHhccCCccchhhhEEEeecCCCCEEEECCCCcHHHHHHHHHhccCCCC
Confidence 478899999999999999955444221 1111 1222444433211110 011
Q ss_pred CCCCcccccccccCCCCCCCCCCCCC-CCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCC
Q psy13352 57 YLRATSIQRCLRAGGKHNDLENVGYT-NYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120 (451)
Q Consensus 57 ~~r~~~~QkCiR~gGkhnDldnVG~t-~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~ 120 (451)
..|++.+++|.|. +=..-|+. -.|..-||.+|.=|. +--.|.|..|+|.|. .+|++
T Consensus 98 p~r~~y~g~vfR~-----~~~~~gr~ref~Q~g~EiiG~~~~--~aDaEvi~l~~~~l~-~lgl~ 154 (391)
T PRK12292 98 PLRLCYAGNVFRA-----QERGLGRSREFLQSGVELIGDAGL--EADAEVILLLLEALK-ALGLP 154 (391)
T ss_pred CeEEEeeceeeec-----CCCcCCCccchhccceEEeCCCCc--hHHHHHHHHHHHHHH-HcCCC
Confidence 2367888999997 32344544 345777999997665 335799999999984 77886
No 84
>PRK00484 lysS lysyl-tRNA synthetase; Reviewed
Probab=28.03 E-value=27 Score=38.15 Aligned_cols=82 Identities=24% Similarity=0.399 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccc--------ccccCCCC---------CCCCCCcccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFK--------DVFLGIEK---------RNYLRATSIQRC 66 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFk--------p~flG~~~---------p~~~r~~~~QkC 66 (451)
+.|-+.+-+||.++|...|..--|.+.. ..|+--+|+ +.+|-+++ ....|+=..-+|
T Consensus 176 s~i~~~iR~f~~~~gF~EVeTPiL~~~~------~Ga~a~pF~t~~~~~~~~~yL~~Spql~lk~l~v~g~~rVfei~~~ 249 (491)
T PRK00484 176 SKIISAIRRFLDNRGFLEVETPMLQPIA------GGAAARPFITHHNALDIDLYLRIAPELYLKRLIVGGFERVYEIGRN 249 (491)
T ss_pred HHHHHHHHHHHHHCCCEEEECCceeccC------CCccceeeeeccccCCCceEeccCHHHHHHHHHhccCCcEEEEecc
Confidence 3566778889999999988554444321 112222332 22332221 124677778899
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhcc-cccccc
Q psy13352 67 LRAGGKHNDLENVGYTNYHHTFFQMLGN-WSFGDY 100 (451)
Q Consensus 67 iR~gGkhnDldnVG~t~rHhTfFEMLGN-fSFGdY 100 (451)
.|. -+. +.||..=|-||=- .+|.||
T Consensus 250 FR~----E~~-----~~rH~pEFt~lE~e~a~~d~ 275 (491)
T PRK00484 250 FRN----EGI-----DTRHNPEFTMLEFYQAYADY 275 (491)
T ss_pred eec----CCC-----CCCcCCceEEEEEEEecCCH
Confidence 997 332 2499999999865 577787
No 85
>cd06008 NF-X1-zinc-finger Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger co-occurs with atypical RING-finger and R3H domains. Human NF-X1 is involved in the transcriptional repression of major histocompatibility complex class II genes. The drosophila homolog encoded by stc (shuttle craft) plays a role in embryonic development, and the Arabidopsis homologue AtNFXL1 has been shown to function in the response to trichothecene and other defense mechanisms.
Probab=26.90 E-value=26 Score=26.39 Aligned_cols=11 Identities=55% Similarity=1.410 Sum_probs=9.1
Q ss_pred CCCCCCceeEE
Q psy13352 173 TGPCGPCSEIF 183 (451)
Q Consensus 173 ~GPCGPcsEI~ 183 (451)
+|||+||+|+-
T Consensus 22 ~G~C~pC~~~~ 32 (49)
T cd06008 22 EGPCPPCPETV 32 (49)
T ss_pred CCcCcCcCCcc
Confidence 58999998754
No 86
>PRK07204 3-oxoacyl-(acyl carrier protein) synthase III; Reviewed
Probab=26.78 E-value=50 Score=33.21 Aligned_cols=60 Identities=18% Similarity=0.123 Sum_probs=39.5
Q ss_pred HHHHHhhhhcCCCCCceE-EEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCCCCCCCCcccCCCCCCCCCceeEEE
Q psy13352 108 WTWELLTQIYGLSIERLW-ITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFY 184 (451)
Q Consensus 108 ~awe~LT~~lgl~~~rL~-vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~~~~~dNfW~~G~~GPCGPcsEI~y 184 (451)
-+++=+.+..|+.++.+- +-.+....-..+-+.+.+|+|++++. .|+++.| +||.++ +++
T Consensus 234 ~~i~~~L~~~gl~~~did~~~~H~~~~~~~~~i~~~l~l~~e~~~-------------~~~~~~G---n~~sas-~~~ 294 (329)
T PRK07204 234 KFIDKLLMDAGYTLADIDLIVPHQASGPAMRLIRKKLGVDEERFV-------------TIFEDHG---NMIAAS-IPV 294 (329)
T ss_pred HHHHHHHHHcCCCHHHCCEEEeCCCCHHHHHHHHHHcCCCHHHhh-------------hhHhhhC---cHHHHH-HHH
Confidence 344444456799998874 33455666667777888999998864 5666554 777665 443
No 87
>PTZ00417 lysine-tRNA ligase; Provisional
Probab=26.26 E-value=31 Score=38.78 Aligned_cols=23 Identities=30% Similarity=0.538 Sum_probs=0.0
Q ss_pred CchHHHHHHHHhcCCCccchhhh
Q psy13352 240 GMGLERLASILQNVYNNYETDLF 262 (451)
Q Consensus 240 GmGLERl~~vlQg~~snYdtDlF 262 (451)
|+|+|||++++-|.+|.=|+=+|
T Consensus 556 GiGIDRLvMlltg~~sIrdVi~F 578 (585)
T PTZ00417 556 GLGIDRITMFLTNKNCIKDVILF 578 (585)
T ss_pred EEcHHHHHHHHcCCcchheeecC
No 88
>PF05634 APO_RNA-bind: APO RNA-binding; InterPro: IPR008512 This family consists of plant APO (accumulation of photosystem 1) proteins.
Probab=26.21 E-value=40 Score=33.06 Aligned_cols=13 Identities=31% Similarity=0.812 Sum_probs=10.8
Q ss_pred CCCCCCceeEEEe
Q psy13352 173 TGPCGPCSEIFYD 185 (451)
Q Consensus 173 ~GPCGPcsEI~yd 185 (451)
.=-||.|+|||+-
T Consensus 98 V~~C~~C~EVHVG 110 (204)
T PF05634_consen 98 VKACGYCPEVHVG 110 (204)
T ss_pred eeecCCCCCeEEC
Confidence 3469999999984
No 89
>COG0060 IleS Isoleucyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=25.32 E-value=33 Score=40.54 Aligned_cols=47 Identities=28% Similarity=0.509 Sum_probs=26.3
Q ss_pred HHHHHhc---CCCCCChHHHHHH--HhcCCCCHHhHHHHHHHcCC------ccCHhhHHH
Q psy13352 380 LENILLT---KPDKLDGKLAFIL--YDTYGFPIDLTIDICKEHNV------SFNKNDFIL 428 (451)
Q Consensus 380 l~~~l~~---~~~~l~g~~af~L--ydtyGfP~dlt~eia~e~gi------~vd~~~f~~ 428 (451)
++++|+. +.+.+.|-.+..- +||||+|+|+-.| ++.|+ ++-.+.|.+
T Consensus 70 lnKilKDiI~Ry~~m~G~~v~~~pGWDcHGLPIE~~ve--k~lg~~k~~i~~~~~~efr~ 127 (933)
T COG0060 70 LNKILKDIIVRYKTMQGYDVPYVPGWDCHGLPIELKVE--KKLGIGKKDIESFGVEEFRE 127 (933)
T ss_pred HHHhhhhhhhhhhcccCCcCCCCCCCcCCCchHHHHHH--HHhCCCcchhhhcCHHHHHH
Confidence 4455544 2233444444333 7999999996544 55553 244456665
No 90
>PRK00745 4-oxalocrotonate tautomerase; Provisional
Probab=25.32 E-value=1e+02 Score=23.31 Aligned_cols=30 Identities=13% Similarity=-0.012 Sum_probs=23.3
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.|.+.+|+|++.++|.+-+
T Consensus 16 qk~~l~~~it~~l~~~~~~p~~~v~V~i~e 45 (62)
T PRK00745 16 QKRKLVEEITRVTVETLGCPPESVDIIITD 45 (62)
T ss_pred HHHHHHHHHHHHHHHHcCCChhHEEEEEEE
Confidence 355566666777888999999999998654
No 91
>cd00774 GlyRS-like_core Glycyl-tRNA synthetase (GlyRS)-like class II core catalytic domain. GlyRS functions as a homodimer in eukaryotes, archaea and some bacteria and as a heterotetramer in the remainder of prokaryotes. It is responsible for the attachment of glycine to the 3' OH group of ribose of the appropriate tRNA. This domain is primarily responsible for ATP binding and hydrolysis. This alignment contains only sequences from the GlyRS form which homodimerizes. The heterotetramer glyQ is in a different family of class II aaRS. Class II assignment is based upon its structure and the presence of three characteristic sequence motifs. This domain is also found at the N-terminus of the accessory subunit of mitochondrial polymerase gamma (Pol gamma b). Pol gamma b stimulates processive DNA synthesis and is functional as a homodimer, which can associate with the catalytic subunit Pol gamma alpha to form a heterotrimer. Despite significant both structural and sequence similarity with Gly
Probab=24.44 E-value=2.2e+02 Score=28.11 Aligned_cols=75 Identities=19% Similarity=0.082 Sum_probs=48.4
Q ss_pred CCcccccccccCCCCCCCCCC-CCCCCchhhhhhhccccccccc-----hHHHHHHHHHHhhhhcCCCCCceEEEEeCCc
Q psy13352 59 RATSIQRCLRAGGKHNDLENV-GYTNYHHTFFQMLGNWSFGDYF-----KYESLQWTWELLTQIYGLSIERLWITVYITD 132 (451)
Q Consensus 59 r~~~~QkCiR~gGkhnDldnV-G~t~rHhTfFEMLGNfSFGdYf-----K~eaI~~awe~LT~~lgl~~~rL~vTv~~~D 132 (451)
|++..++|.| |....- |. .| .-=|+|.+-.+|++=- =+..+....+++. .+|++++++-++....+
T Consensus 109 ~~~qig~~fR-----~E~~~~~gl-~R-~ReF~q~d~~~f~~~~~~~e~~~~v~~~~~~~l~-~~G~~~~~~r~~~~~~~ 180 (254)
T cd00774 109 GVAQIGKSFR-----NEISPRNGL-FR-VREFTQAEIEFFVDPEKSHPWFDYWADQRLKWLP-KFAQSPENLRLTDHEKE 180 (254)
T ss_pred hhhhhchhhc-----cccCcccce-ee-eccchhhheeeeECCCCchHHHHHHHHHHHHHHH-HcCCCccceEEEecccH
Confidence 6788899999 465322 11 11 2237888999997321 1234555566664 58999999999988653
Q ss_pred ------HHHHHHHHh
Q psy13352 133 ------DETYNIWTN 141 (451)
Q Consensus 133 ------~Ea~~iW~~ 141 (451)
.++.++|.+
T Consensus 181 e~a~ya~~~~d~~~~ 195 (254)
T cd00774 181 ELAHYANETLDYFYA 195 (254)
T ss_pred hhhhhhHHHHHHHHH
Confidence 355777765
No 92
>PTZ00425 asparagine-tRNA ligase; Provisional
Probab=23.90 E-value=2.7e+02 Score=31.52 Aligned_cols=49 Identities=16% Similarity=0.221 Sum_probs=32.8
Q ss_pred CCCCcccccccccCCCCCCCCCCCCCCCchhhhhhhcc-ccccccc-----hHHHHHHHHHHh
Q psy13352 57 YLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGN-WSFGDYF-----KYESLQWTWELL 113 (451)
Q Consensus 57 ~~r~~~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGN-fSFGdYf-----K~eaI~~awe~L 113 (451)
..|+-...+|.|+ -|. .|.||++=|-||=- .+|.||. -++.|..++..+
T Consensus 343 ~~rVf~i~p~FRa----E~s----~t~RHL~EFt~lE~E~af~d~~d~m~~~E~li~~v~~~v 397 (586)
T PTZ00425 343 MGDVYTFGPTFRA----ENS----HTSRHLAEFWMIEPEIAFADLYDNMELAESYIKYCIGYV 397 (586)
T ss_pred cCCEEEEeceEeC----CCC----CCCCCCcccceEEEEEecCCHHHHHHHHHHHHHHHHHHH
Confidence 6788889999999 443 38899977777643 3777763 234455555443
No 93
>COG1244 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=23.73 E-value=1.4e+02 Score=31.52 Aligned_cols=106 Identities=20% Similarity=0.192 Sum_probs=71.2
Q ss_pred CCCCccccCchHH----HHHHHHhcCCCccchhhhHHHHHHHHHHhCCC---C-----CCCcceEEeechhhhhhhhhhc
Q psy13352 232 LPKYCVDTGMGLE----RLASILQNVYNNYETDLFKTLIKAAARETNCN---N-----LKNNSLKVIADHIRACVFLIID 299 (451)
Q Consensus 232 Lp~k~IDTGmGLE----Rl~~vlQg~~snYdtDlF~pli~~i~~~~g~~---~-----~~~~a~rvIaDH~Ra~~f~IaD 299 (451)
|+-+.++-|.||| ++.-..-+|-++|.- |..-++.|. ..|.. | .--.-=..|+|-++++. +..+
T Consensus 160 l~gk~~EvaIGLETanD~ire~sINKGftF~d--f~~A~~~ir-~~g~~vktYlllKP~FlSE~eAI~D~i~Si~-~~~~ 235 (358)
T COG1244 160 LEGKIVEVAIGLETANDKIREDSINKGFTFED--FVRAAEIIR-NYGAKVKTYLLLKPPFLSEKEAIEDVISSIV-AAKP 235 (358)
T ss_pred hCCceEEEEEecccCcHHHHHHhhhcCCcHHH--HHHHHHHHH-HcCCceeEEEEecccccChHHHHHHHHHHHH-Hhcc
Confidence 4679999999997 565555666665442 444334333 23432 1 11122256889999888 8888
Q ss_pred Cc-----ccCCCCCchHHHHHHHHHHHHHHHhCCCCchhhhhHHHHHHHhhhhCh
Q psy13352 300 GV-----FPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYK 349 (451)
Q Consensus 300 Gv-----~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~yp 349 (451)
|. =|+|..+|=++=.+-||- ...+|+|..+|.++.+.++ ..|
T Consensus 236 ~~d~iSinptnVqKgTlvE~lw~~g-------~YRPPwLWSivEVL~~~~~-~~~ 282 (358)
T COG1244 236 GTDTISINPTNVQKGTLVEKLWRRG-------LYRPPWLWSIVEVLREAKK-TGP 282 (358)
T ss_pred CCCeEEecccccchhhHHHHHHHcC-------CCCCchHHHHHHHHHHHHh-cCC
Confidence 85 699999999888776553 2467899999988877665 555
No 94
>COG2250 Uncharacterized conserved protein related to C-terminal domain of eukaryotic chaperone, SACSIN [Function unknown]
Probab=23.44 E-value=3.2e+02 Score=24.61 Aligned_cols=76 Identities=18% Similarity=0.097 Sum_probs=46.0
Q ss_pred CCCchHHHHHHHHHHHHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy13352 306 EGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILL 385 (451)
Q Consensus 306 ~GrGYvlRrilRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~ 385 (451)
..+++-||.|+++..+. +..++.++..+...--..+.+.||.-.... -....-+..-+.+.++.++-++.+++.+.
T Consensus 55 ~p~tH~l~~Ll~~l~~~---~~~~e~~~~~~~~Le~~yi~srY~d~~~~~-p~e~~~~~~ae~~l~~A~~v~e~v~~~l~ 130 (132)
T COG2250 55 PPKTHSLRELLRELSRE---LEVPEEILECARELEKRYILSRYPDAEYEG-PLELYSKEDAEELLKTAEKVLELVEGLLG 130 (132)
T ss_pred CCCcCCHHHHHHHHHHh---ccCcHHHHHHHHHHHHHHhHhcCccccccC-ccchhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 45678899999988876 555555543332222233446788776654 22334444555677777777777766543
No 95
>PRK00476 aspS aspartyl-tRNA synthetase; Validated
Probab=23.36 E-value=2.2e+02 Score=32.10 Aligned_cols=101 Identities=17% Similarity=0.189 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCc--cccccccccccccccCCCCC---------CCCCCcccccccccCCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSL--LFTNSGMVQFKDVFLGIEKR---------NYLRATSIQRCLRAGGK 72 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptl--lFtnAGM~qFkp~flG~~~p---------~~~r~~~~QkCiR~gGk 72 (451)
+.|-+.+-+||.++|..-|..--|.+...+.- +.+.+-+..=+.|+|-+++. ...|+-...+|.|.
T Consensus 145 s~i~~~iR~ff~~~gFiEV~TP~L~~s~~ega~~f~v~~~~~~~~~~~L~qSpql~kq~l~~~g~~rvfqi~~~FR~--- 221 (588)
T PRK00476 145 SKVTSAIRNFLDDNGFLEIETPILTKSTPEGARDYLVPSRVHPGKFYALPQSPQLFKQLLMVAGFDRYYQIARCFRD--- 221 (588)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeeecCCCCCCccceecccccCCceeecCCCHHHHHHHHHhcccCceEEEeceeec---
Confidence 45667788999999998886555544211111 22211111112233433321 24678888999998
Q ss_pred CCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHhhh
Q psy13352 73 HNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLTQ 115 (451)
Q Consensus 73 hnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT~ 115 (451)
-|. .|.||. =|-||--. ||-+| ++.++.+=+++..
T Consensus 222 -E~~----~~~r~~-EFt~le~e~af~~~--~dvm~~~E~li~~ 257 (588)
T PRK00476 222 -EDL----RADRQP-EFTQIDIEMSFVTQ--EDVMALMEGLIRH 257 (588)
T ss_pred -CCC----CCCcCc-ccccceeeecCCCH--HHHHHHHHHHHHH
Confidence 343 367777 77787655 77776 4565555555443
No 96
>TIGR00469 pheS_mito phenylalanyl-tRNA synthetase, mitochondrial. Unlike all other known phenylalanyl-tRNA synthetases, the mitochondrial form demonstrated from yeast is monomeric. It is similar to but longer than the alpha subunit (PheS) of the alpha 2 beta 2 form found in Bacteria, Archaea, and eukaryotes, and shares the characteristic motifs of class II aminoacyl-tRNA ligases. This alignment models the experimental example from Saccharomyces cerevisiae (designated MSF1) and its orthologs from other eukaryotic species.
Probab=23.12 E-value=42 Score=36.73 Aligned_cols=19 Identities=32% Similarity=0.606 Sum_probs=15.9
Q ss_pred ccCchHHHHHHHHhcCCCc
Q psy13352 238 DTGMGLERLASILQNVYNN 256 (451)
Q Consensus 238 DTGmGLERl~~vlQg~~sn 256 (451)
=-||||||||+++-|.+..
T Consensus 317 AfGiGleRlaMl~~gi~Di 335 (460)
T TIGR00469 317 AFGLGLDRIAMLLFDIPDI 335 (460)
T ss_pred EEEecHHHHHHHHcCccHH
Confidence 3599999999999887753
No 97
>PRK12293 hisZ ATP phosphoribosyltransferase regulatory subunit; Provisional
Probab=22.67 E-value=2e+02 Score=28.99 Aligned_cols=98 Identities=14% Similarity=0.124 Sum_probs=63.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCc-cccccccccccccccCCC---------------------CCCCCCCc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSL-LFTNSGMVQFKDVFLGIE---------------------KRNYLRAT 61 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptl-lFtnAGM~qFkp~flG~~---------------------~p~~~r~~ 61 (451)
++|++.+.+-|+++|...|..-.+=- -+ .+ ......|..|.+- .|.. .+...|++
T Consensus 23 ~~i~~~l~~vf~~~Gy~~I~tP~lE~-~e-~~~~~~~~~~y~~~D~-~g~~l~LRpD~T~~iaR~~a~~~~~~~~p~r~~ 99 (281)
T PRK12293 23 REIENVASEILYENGFEEIVTPFFSY-HQ-HQSIADEKELIRFSDE-KNHQISLRADSTLDVVRIVTKRLGRSTEHKKWF 99 (281)
T ss_pred HHHHHHHHHHHHHcCCeEeeccceee-hh-hhcccchhceEEEECC-CCCEEEECCcCCHHHHHHHHHhcccCCCceeEE
Confidence 57889999999999999886554422 11 11 0122334444431 1110 01123788
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCC
Q psy13352 62 SIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120 (451)
Q Consensus 62 ~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~ 120 (451)
-+++|.|. +. .-.|+.-.|++|.-|. .|+|..|++.| +.+|++
T Consensus 100 Y~g~vfR~----~~------rEf~Q~GvEliG~~~~-----~Evi~la~~~l-~~lgl~ 142 (281)
T PRK12293 100 YIQPVFRY----PS------NEIYQIGAELIGEEDL-----SEILNIAAEIF-EELELE 142 (281)
T ss_pred EeccEEec----CC------CcccccCeEeeCCCCH-----HHHHHHHHHHH-HHcCCC
Confidence 88999996 21 3456777889999885 59999999988 478986
No 98
>PLN02603 asparaginyl-tRNA synthetase
Probab=22.59 E-value=1.2e+02 Score=34.02 Aligned_cols=88 Identities=22% Similarity=0.372 Sum_probs=53.5
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCC----cccc---------------------ccccccc------cccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSS----LLFT---------------------NSGMVQF------KDVFLGI 52 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dpt----llFt---------------------nAGM~qF------kp~flG~ 52 (451)
++|-..+-+||.++|...|. .|++-..|+. +.++ ..|..+| ||.+|-+
T Consensus 230 S~i~~air~ff~~~gF~eV~-TPiLt~s~~EGA~e~F~Vttl~~~~~~~~~~~~~~lp~~~~~~~~~~~dyF~~~~~Ltv 308 (565)
T PLN02603 230 NALAYATHKFFQENGFVWVS-SPIITASDCEGAGEQFCVTTLIPNSAENGGSLVDDIPKTKDGLIDWSQDFFGKPAFLTV 308 (565)
T ss_pred HHHHHHHHHHHHHCCCEEEE-CCeecccCCCccccCceeeeccccccccccccccccccCcccccccchhhhCcceeecc
Confidence 35667888999999988873 3444333321 2222 1222223 3444533
Q ss_pred CC--------CCCCCCcccccccccCCCCCCCCCCCCCCCchhhhhhhc-ccccccc
Q psy13352 53 EK--------RNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLG-NWSFGDY 100 (451)
Q Consensus 53 ~~--------p~~~r~~~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLG-NfSFGdY 100 (451)
.. ....|+=+..+|.|+ -+. .|.||+.=|-||= -.+|.||
T Consensus 309 S~QL~~E~~~~~l~rVy~igp~FRa----E~s----~T~RHL~EF~mlE~E~af~dl 357 (565)
T PLN02603 309 SGQLNGETYATALSDVYTFGPTFRA----ENS----NTSRHLAEFWMIEPELAFADL 357 (565)
T ss_pred CchHHHHHHHhcccceEEEecceeC----CCC----CCccccccceeeeeeeecCCH
Confidence 32 135788899999999 333 3789998888874 3356665
No 99
>KOG1035|consensus
Probab=22.33 E-value=1.9e+02 Score=35.51 Aligned_cols=121 Identities=21% Similarity=0.223 Sum_probs=77.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCC-------Ccccccccccccccccc---------------------CCCCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDS-------SLLFTNSGMVQFKDVFL---------------------GIEKR 55 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dp-------tllFtnAGM~qFkp~fl---------------------G~~~p 55 (451)
+.+++.+.+-|+++|-..+.+-|+.+++++ -.+.+++||+---||=| +.+-+
T Consensus 936 ~~v~e~~~~ifr~Hga~~l~tpp~~~~~~~~~~~~~~v~~ld~sG~~v~Lp~DLr~pfar~vs~N~~~~~Kry~i~rVyr 1015 (1351)
T KOG1035|consen 936 EYVVEEVVKIFRKHGAIELETPPLSLRNACAYFSRKAVELLDHSGDVVELPYDLRLPFARYVSRNSVLSFKRYCISRVYR 1015 (1351)
T ss_pred HHHHHHHHHHHHHhcceeccCCccccccccchhccceeeeecCCCCEEEeeccccchHHHHhhhchHHHHHHhhhheeec
Confidence 457889999999999777777688887654 46778888864444322 22211
Q ss_pred CCCCCcccccccccCCCCCCCCCCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHH
Q psy13352 56 NYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDET 135 (451)
Q Consensus 56 ~~~r~~~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea 135 (451)
|.. ..-+-+|.-. |.|-||.|.. +- -.|.+.-|.|-+|+ -++.-+..+-.-+.|- -
T Consensus 1016 ~~~-~~hP~~~~ec-----~fDii~~t~s---l~------------~AE~L~vi~Ei~~~--~l~~~n~~i~lnH~~L-L 1071 (1351)
T KOG1035|consen 1016 PAI-HNHPKECLEC-----DFDIIGPTTS---LT------------EAELLKVIVEITTE--ILHEGNCDIHLNHADL-L 1071 (1351)
T ss_pred ccc-cCCCccccce-----eeeEecCCCC---cc------------HHHHHHHHHHHHHH--HhccCceeEEeChHHH-H
Confidence 111 1123445554 8888988765 32 47899999999987 4566666655545443 3
Q ss_pred HHHHHhhcCCCCCc
Q psy13352 136 YNIWTNKIGVPKER 149 (451)
Q Consensus 136 ~~iW~~~~Gv~~~r 149 (451)
..||.- +|||+++
T Consensus 1072 ~Ai~~~-~~i~~~~ 1084 (1351)
T KOG1035|consen 1072 EAILSH-CGIPKDQ 1084 (1351)
T ss_pred HHHHHH-cCCCHHH
Confidence 345544 7888765
No 100
>PTZ00385 lysyl-tRNA synthetase; Provisional
Probab=22.32 E-value=40 Score=38.43 Aligned_cols=82 Identities=17% Similarity=0.309 Sum_probs=51.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc--------cccccCCCCC---------CCCCCcccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF--------KDVFLGIEKR---------NYLRATSIQRC 66 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF--------kp~flG~~~p---------~~~r~~~~QkC 66 (451)
++|-+.+-+||.++|..-|..--|.+.. +.||-.+| ++.+|-+++. ...|+=...||
T Consensus 237 s~I~~aiR~ff~~~gFlEVeTPiL~~~~------~ga~a~pF~t~~n~~~~~~yL~~SPELylKrLivgG~erVyeIg~~ 310 (659)
T PTZ00385 237 HVMLQALRDYFNERNFVEVETPVLHTVA------SGANAKSFVTHHNANAMDLFLRVAPELHLKQCIVGGMERIYEIGKV 310 (659)
T ss_pred HHHHHHHHHHHHHCCCEEeeCCEeeccC------CCCCccceEeecccCCCCEEecCChHHHHHHHhhcccCCEEEEece
Confidence 4677788899999999888655554421 22232333 2334443321 24667778899
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhccc-ccccc
Q psy13352 67 LRAGGKHNDLENVGYTNYHHTFFQMLGNW-SFGDY 100 (451)
Q Consensus 67 iR~gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdY 100 (451)
.|. -+ + +.||.+=|-||=-. +|.||
T Consensus 311 FRn----E~---~--~~rH~pEFTmlE~y~a~~d~ 336 (659)
T PTZ00385 311 FRN----ED---A--DRSHNPEFTSCEFYAAYHTY 336 (659)
T ss_pred ecC----CC---C--CCCccccccceeeeeecCCH
Confidence 997 22 2 36899999987655 66676
No 101
>COG0017 AsnS Aspartyl/asparaginyl-tRNA synthetases [Translation, ribosomal structure and biogenesis]
Probab=22.21 E-value=66 Score=35.01 Aligned_cols=32 Identities=28% Similarity=0.262 Sum_probs=27.1
Q ss_pred CCCccccCchHHHHHHHHhcCCCccchhhhHH
Q psy13352 233 PKYCVDTGMGLERLASILQNVYNNYETDLFKT 264 (451)
Q Consensus 233 p~k~IDTGmGLERl~~vlQg~~snYdtDlF~p 264 (451)
+.+|---|+|+|||++.+-|..++=|+-+|..
T Consensus 397 ~~PHaGfGlG~ERlv~~i~gl~nIRea~pFPR 428 (435)
T COG0017 397 MPPHAGFGLGLERLVMYILGLDNIREAIPFPR 428 (435)
T ss_pred CCCCcccccCHHHHHHHHhCCCcceeccccCC
Confidence 44677899999999999999999888877654
No 102
>cd04758 Commd10 COMM_Domain containing protein 10. The COMM Domain is found at the C-terminus of a variety of proteins; presumably all COMM_Domain containing proteins are located in the nucleus and the COMM domain plays a role in protein-protein interactions. Several family members have been shown to bind and inhibit NF-kappaB.
Probab=22.19 E-value=5.3e+02 Score=24.32 Aligned_cols=95 Identities=14% Similarity=0.028 Sum_probs=58.1
Q ss_pred HHHHHHHHHHhCCCCchhhhhHHHHHHHhhhhCh-hhh-hcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh
Q psy13352 316 IRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYK-ELK-ISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDG 393 (451)
Q Consensus 316 lRRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~yp-eL~-~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~~~~~l~g 393 (451)
||.|+..... ++.+-+.+|+..++..+....+ -.. +....+.+....+...+...++.-.-+|+.+++. .++.
T Consensus 1 ~~~av~~ln~--l~~~~f~~ll~~i~~~l~~~~~~~~s~~~~~kl~~~~~~~~~~l~~vi~~l~~il~~A~k~---nl~~ 75 (186)
T cd04758 1 IKEAVSLINS--IDTEKFPRLLSRLFQKLHLKAERSFSEEEEEKLQEAFKLLSQDLKLLLETISFILEQAAYH---NLKP 75 (186)
T ss_pred CchHHHHHhc--CCHHHHHHHHHHHHHHhcccccCCccHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHh---cCCH
Confidence 3566666655 4445568899998888763222 111 1123344444455555666666555566666653 4778
Q ss_pred HHHHHHHhcCCCCHHhHHHHHH
Q psy13352 394 KLAFILYDTYGFPIDLTIDICK 415 (451)
Q Consensus 394 ~~af~LydtyGfP~dlt~eia~ 415 (451)
+.+..-....|+|-|-+..+++
T Consensus 76 ~~L~~~L~~l~l~~e~~~~~~~ 97 (186)
T cd04758 76 SNLQQQLRNILLLEDKASAFVN 97 (186)
T ss_pred HHHHHHHHHcCCCHHHHHHHHH
Confidence 8888777888888887776644
No 103
>TIGR00706 SppA_dom signal peptide peptidase SppA, 36K type. The member of this family from Bacillus subtilis was shown to have properties consistent with a role in degrading signal peptides after cleavage from precursor proteins, although it was not demonstrated conclusively.
Probab=22.02 E-value=1.6e+02 Score=28.04 Aligned_cols=25 Identities=12% Similarity=0.186 Sum_probs=19.6
Q ss_pred cHHHHHHHHHHHHHHHHHHHHHHHH
Q psy13352 354 SVIKIEEILKKEEECFRKTLKYGIK 378 (451)
Q Consensus 354 ~~~~I~~ii~~EE~~F~~tL~~G~~ 378 (451)
.++.+++.+..-.+.|..++.++.+
T Consensus 139 ~~e~~~~~l~~~~~~f~~~va~~R~ 163 (207)
T TIGR00706 139 ERDILQNLVNESYEQFVQVVAKGRN 163 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 4577888888888889888877654
No 104
>cd02433 Nodulin-21_like_2 Nodulin-21 and CCC1-related protein family. Nodulin-21_like_2: This is a family of proteins closely related to nodulin-21, a plant nodule-specific protein that may be involved in symbiotic nitrogen fixation. This family is also related to CCC1, a yeast vacuole transmembrane protein that functions as an iron and manganese transporter.
Probab=21.64 E-value=3.8e+02 Score=26.59 Aligned_cols=103 Identities=17% Similarity=0.219 Sum_probs=58.6
Q ss_pred eechhhhhhhhhhcCcccCCCCCchHHHHHHHHHHHHHH---HhCCCCchh---hhhHHHHHHHhhhhChhhhhcHHHHH
Q psy13352 286 IADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGY---KLGQNSIFL---YKLVKDLIFNTYIIYKELKISVIKIE 359 (451)
Q Consensus 286 IaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRRa~r~~~---~lg~~~~fl---~~Lv~~vi~~m~~~ypeL~~~~~~I~ 359 (451)
..+++|+++|=..||++=.= |+-.|- ..+...-++ ..++.-.+.+-...|=.-+.+++.++
T Consensus 16 ~~~~lr~~VlG~nDGlvt~f-------------alvaG~aga~~~~~~Vl~~Gla~liAga~SMa~GeYls~kse~d~~~ 82 (234)
T cd02433 16 MSGNLRAAVFGANDGLVSNL-------------ALVMGVAGAGVSNQTILLTGLAGLLAGALSMAAGEYVSVTSQRELLE 82 (234)
T ss_pred hhhHHHHHHHhccchHHHHH-------------HHHHHHHhhcCCcchhHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHH
Confidence 57899999999999975310 011110 000011122 33333333333357776666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHhcCCCCHHhHHHHHHHc
Q psy13352 360 EILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEH 417 (451)
Q Consensus 360 ~ii~~EE~~F~~tL~~G~~~l~~~l~~~~~~l~g~~af~LydtyGfP~dlt~eia~e~ 417 (451)
..++.|+......-+ ---+++..+|..+|+|.+..+.++++-
T Consensus 83 ~~~~re~~~i~~~p~----------------~e~~el~~iy~~~G~~~~~a~~~~~~l 124 (234)
T cd02433 83 ASIPDERRELRKHPL----------------EEAAELALIYRAKGLDEEEAKRVASQL 124 (234)
T ss_pred HHHHHHHHHhhhCcH----------------HHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 777666654433222 113557788888899998888777763
No 105
>PF00152 tRNA-synt_2: tRNA synthetases class II (D, K and N) ; InterPro: IPR004364 The aminoacyl-tRNA synthetases (6.1.1. from EC) catalyse the attachment of an amino acid to its cognate transfer RNA molecule in a highly specific two-step reaction. These proteins differ widely in size and oligomeric state, and have limited sequence homology []. The 20 aminoacyl-tRNA synthetases are divided into two classes, I and II. Class I aminoacyl-tRNA synthetases contain a characteristic Rossman fold catalytic domain and are mostly monomeric []. Class II aminoacyl-tRNA synthetases share an anti-parallel beta-sheet fold flanked by alpha-helices [], and are mostly dimeric or multimeric, containing at least three conserved regions [, , ]. However, tRNA binding involves an alpha-helical structure that is conserved between class I and class II synthetases. In reactions catalysed by the class I aminoacyl-tRNA synthetases, the aminoacyl group is coupled to the 2'-hydroxyl of the tRNA, while, in class II reactions, the 3'-hydroxyl site is preferred. The synthetases specific for arginine, cysteine, glutamic acid, glutamine, isoleucine, leucine, methionine, tyrosine, tryptophan and valine belong to class I synthetases. The synthetases specific for alanine, asparagine, aspartic acid, glycine, histidine, lysine, phenylalanine, proline, serine, and threonine belong to class-II synthetases []. Based on their mode of binding to the tRNA acceptor stem, both classes of tRNA synthetases have been subdivided into three subclasses, designated 1a, 1b, 1c and 2a, 2b, 2c. This entry includes the asparagine, aspartic acid and lysine tRNA synthetases.; GO: 0000166 nucleotide binding, 0004812 aminoacyl-tRNA ligase activity, 0005524 ATP binding, 0006418 tRNA aminoacylation for protein translation, 0005737 cytoplasm; PDB: 1N9W_B 1BBU_A 1BBW_A 4EX5_B 3E9I_A 3E9H_C 3A74_C 1NNH_A 3M4P_C 3M4Q_B ....
Probab=21.57 E-value=80 Score=32.23 Aligned_cols=29 Identities=31% Similarity=0.331 Sum_probs=23.1
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
++=-.|+|+|||++++-|.++.=|+-+|.
T Consensus 303 p~~G~glG~eRLvm~l~g~~~Irdv~~FP 331 (335)
T PF00152_consen 303 PHGGFGLGLERLVMLLLGLKNIRDVIPFP 331 (335)
T ss_dssp SEEEEEEEHHHHHHHHHT-SSGGGGSSS-
T ss_pred ccCcceehHHHHHHHHcCCCcHHheecCC
Confidence 56688999999999999999987775553
No 106
>PF11887 DUF3407: Protein of unknown function (DUF3407); InterPro: IPR024516 This entry represents a domain of unknown function found at the C terminus of many proteins in the mammalian cell entry family.
Probab=21.38 E-value=7.1e+02 Score=24.98 Aligned_cols=88 Identities=13% Similarity=0.063 Sum_probs=64.3
Q ss_pred hhhhhhhhhcCcccCCCCCchHHHHHHHHHHHHHHHhCCCCchhhhhH---HHHHHHhhhhChhhhhc---HHHHHHHHH
Q psy13352 290 IRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLV---KDLIFNTYIIYKELKIS---VIKIEEILK 363 (451)
Q Consensus 290 ~Ra~~f~IaDGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~Lv---~~vi~~m~~~ypeL~~~---~~~I~~ii~ 363 (451)
+.+++=++++++ .|||=-|+..|.+.-++...|+-..+-+.+++ ..|.+.+.+.=|+|..- ...+.+.|.
T Consensus 15 Ln~tL~ala~Al----~GrG~~lg~~l~~l~~~l~~ln~~~~~l~~~l~~l~~v~~~~a~aapdL~~~l~~~~~~s~tL~ 90 (267)
T PF11887_consen 15 LNATLSALATAL----DGRGEQLGETLDDLNTLLATLNPRLPQLREDLRNLADVADTYADAAPDLLDALDNLTTTSRTLV 90 (267)
T ss_pred HHHHHHHHHHHH----cCcchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 345555666665 69999999999999999998876655444444 55667777777887763 356788888
Q ss_pred HHHHHHHHHHHHHHHHHH
Q psy13352 364 KEEECFRKTLKYGIKILE 381 (451)
Q Consensus 364 ~EE~~F~~tL~~G~~~l~ 381 (451)
.+...+...|..+..+.+
T Consensus 91 ~~~~~L~~lL~~~~~~a~ 108 (267)
T PF11887_consen 91 DQRQQLDALLLSATGLAD 108 (267)
T ss_pred HhHHHHHHHHHHHHHHHH
Confidence 899888888877665533
No 107
>TIGR02367 PylS pyrrolysyl-tRNA synthetase. PylS is the archaeal enzyme responsible for charging the pyrrolysine tRNA, PylT, by ligating a free molecule of pyrrolysine. Pyrrolysine is encoded at an in-frame UAG (amber) at least in several corrinoid-dependent methyltransferases of the archaeal genera Methanosarcina and Methanococcoides, such as trimethylamine methyltransferase.
Probab=21.28 E-value=2.1e+02 Score=31.43 Aligned_cols=170 Identities=19% Similarity=0.258 Sum_probs=91.9
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccc------c------cccccccc-------CC--C-CCCCCCCc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSG------M------VQFKDVFL-------GI--E-KRNYLRAT 61 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAG------M------~qFkp~fl-------G~--~-~p~~~r~~ 61 (451)
.++.+.+-++|...|...|-...|.+...=+.+=...| | .-+.|-++ .. . .+..-|+.
T Consensus 243 ~~Led~IRevfvg~GFqEV~TPtLt~eE~~E~m~~~~g~eI~n~Iyk~ee~lvLRPdLTPsLaR~La~N~~~l~~PqKIF 322 (453)
T TIGR02367 243 GKLERDITKFFVDRGFLEIKSPILIPAEYIERMGIDNDTELSKQIFRVDKNFCLRPMLAPNLYNYLRKLDRALPDPIKIF 322 (453)
T ss_pred HHHHHHHHHHHHHCCCEEEECCeecchHHHHhhcCccCCcccccceEecCceEecccCHHHHHHHHHHhhhhccCCeeEE
Confidence 57788888999999999998888753210000000001 1 12222111 00 0 11112677
Q ss_pred ccccccccCCCCCCCCCCCCCCCchhhhhhhccccccc-cchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHH
Q psy13352 62 SIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGD-YFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWT 140 (451)
Q Consensus 62 ~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNfSFGd-YfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~ 140 (451)
...+|.|. |-. +..|.-=|.++|--..|+ ---.|+...+-++|. .|||+ ..++
T Consensus 323 EIGkVFR~-----E~~----~~thlREF~QL~~eIaG~~atfaDlealL~e~Lr-~LGId---feit------------- 376 (453)
T TIGR02367 323 EIGPCYRK-----ESD----GKEHLEEFTMLNFCQMGSGCTRENLEAIIKDFLD-HLEID---FEIV------------- 376 (453)
T ss_pred EEcCeEec-----CCC----CCCCcCeEEEEEEEEECCCCCHHHHHHHHHHHHH-HCCCc---eEEe-------------
Confidence 78899995 522 234554455555444442 122578888888874 67874 1111
Q ss_pred hhcCCCCCceeecCCCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccC
Q psy13352 141 NKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEI 220 (451)
Q Consensus 141 ~~~Gv~~~rI~~~g~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~ 220 (451)
++-+ .. . |.|-+|.. + .+|+++-||=+-+-..
T Consensus 377 ------------------------E~s~-FI-~---GR~A~I~~-------G------------~~Ev~~GvfGEihpL~ 408 (453)
T TIGR02367 377 ------------------------GDSC-MV-Y---GDTLDIMH-------G------------DLELSSAVVGPIPLDR 408 (453)
T ss_pred ------------------------CCCc-eE-e---cceeeeec-------C------------CEEEeeEEEeeccccc
Confidence 1111 12 1 34556662 1 1677666665544211
Q ss_pred CCCCCCcccccCCCCccccCchHHHHHHHHhcCCC
Q psy13352 221 NPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYN 255 (451)
Q Consensus 221 d~~~G~~~l~~Lp~k~IDTGmGLERl~~vlQg~~s 255 (451)
. -| ++.+++=-|+|||||+++..|..+
T Consensus 409 ~--fG------Ie~PVvAfEI~LeRLam~~~g~~d 435 (453)
T TIGR02367 409 E--WG------IDKPWIGAGFGLERLLKVKHDFKN 435 (453)
T ss_pred c--cC------CCCccEEEEeehhHHHHHHhCcHH
Confidence 1 13 456789999999999999999654
No 108
>PRK07080 hypothetical protein; Validated
Probab=21.23 E-value=1.5e+02 Score=30.95 Aligned_cols=83 Identities=13% Similarity=0.141 Sum_probs=54.5
Q ss_pred CCCCccccccccccccccccCC--CCCCCCCCcccccccccCCCCCCCCCCCCCCCchhhhhh-----hccccccccchH
Q psy13352 31 NDSSLLFTNSGMVQFKDVFLGI--EKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQM-----LGNWSFGDYFKY 103 (451)
Q Consensus 31 ~dptllFtnAGM~qFkp~flG~--~~p~~~r~~~~QkCiR~gGkhnDldnVG~t~rHhTfFEM-----LGNfSFGdYfK~ 103 (451)
.+|....+-|-=.+|=|.+.+. .+.....+..+-.|.|--+ | ++.+-.-.|-| +|+=-.=.=|.+
T Consensus 124 ~~~~~vL~pAaCyP~Yp~l~~~g~lp~~g~~~dv~g~CFR~E~-s-------~dl~Rl~~F~mrE~V~iGt~e~v~~~r~ 195 (317)
T PRK07080 124 KPTDVVLTPAACYPVYPVLARRGALPADGRLVDVASYCFRHEP-S-------LDPARMQLFRMREYVRIGTPEQIVAFRQ 195 (317)
T ss_pred CCCcceecccccccchhhhccCcccCCCCcEEEeeeeeeccCC-C-------CCcHHHhheeeeEEEEecCHHHHHHHHH
Confidence 3568889999999999999954 3434556678899999733 2 34555666777 554433233555
Q ss_pred HHHHHHHHHhhhhcCCCCC
Q psy13352 104 ESLQWTWELLTQIYGLSIE 122 (451)
Q Consensus 104 eaI~~awe~LT~~lgl~~~ 122 (451)
..++.+-+++ +.|||+-+
T Consensus 196 ~w~e~~~~l~-~~LgL~~~ 213 (317)
T PRK07080 196 SWIERGTAMA-DALGLPVE 213 (317)
T ss_pred HHHHHHHHHH-HHhCCcee
Confidence 5566666664 46777754
No 109
>PRK14063 exodeoxyribonuclease VII small subunit; Provisional
Probab=21.20 E-value=1.1e+02 Score=25.28 Aligned_cols=31 Identities=16% Similarity=0.270 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHhc-CCCCCChHHHHHHHhcCC
Q psy13352 373 LKYGIKILENILLT-KPDKLDGKLAFILYDTYG 404 (451)
Q Consensus 373 L~~G~~~l~~~l~~-~~~~l~g~~af~LydtyG 404 (451)
.+.+++.|++++++ .++.+|-++++.+|.. |
T Consensus 7 fEeal~~LE~Iv~~LE~~~l~Leesl~lyee-G 38 (76)
T PRK14063 7 FEEAISQLEHLVSKLEQGDVPLEEAISYFKE-G 38 (76)
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-H
Confidence 44555667777766 4568999999999986 5
No 110
>COG1190 LysU Lysyl-tRNA synthetase (class II) [Translation, ribosomal structure and biogenesis]
Probab=21.07 E-value=47 Score=36.65 Aligned_cols=24 Identities=29% Similarity=0.461 Sum_probs=21.1
Q ss_pred ccCchHHHHHHHHhcCCCccchhh
Q psy13352 238 DTGMGLERLASILQNVYNNYETDL 261 (451)
Q Consensus 238 DTGmGLERl~~vlQg~~snYdtDl 261 (451)
-.|||.+||+++|-|.+|.=|+=+
T Consensus 471 G~GiGIDRLvMllT~~~sIRdVil 494 (502)
T COG1190 471 GLGIGIDRLVMLLTNSPSIRDVIL 494 (502)
T ss_pred CccccHHHHHHHHcCCCchhheec
Confidence 479999999999999999888733
No 111
>PLN02530 histidine-tRNA ligase
Probab=21.01 E-value=2.2e+02 Score=30.95 Aligned_cols=121 Identities=16% Similarity=0.122 Sum_probs=75.8
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccc------ccccccccccccCCC-------C--------------CC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFT------NSGMVQFKDVFLGIE-------K--------------RN 56 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFt------nAGM~qFkp~flG~~-------~--------------p~ 56 (451)
..|.+.+.+-|+++|...|..-.+-+ -+++.. ..-|..|.+- .|.. . +-
T Consensus 88 ~~i~~~~~~~~~~~Gy~~I~tP~lE~---~el~~~~~g~~~~~~~y~f~D~-~g~~l~LRpD~T~~iaR~~~~~~~~~~~ 163 (487)
T PLN02530 88 NWLFDHFREVSRLFGFEEVDAPVLES---EELYIRKAGEEITDQLYNFEDK-GGRRVALRPELTPSLARLVLQKGKSLSL 163 (487)
T ss_pred HHHHHHHHHHHHHcCCEeccccccch---HHHhccccCcccccceEEEECC-CCCEEecCCCCcHHHHHHHHhcccccCC
Confidence 57889999999999999986544433 122222 2225555431 1111 0 11
Q ss_pred CCCCcccccccccCCCCCCCCCCCCC-CCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHH
Q psy13352 57 YLRATSIQRCLRAGGKHNDLENVGYT-NYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDET 135 (451)
Q Consensus 57 ~~r~~~~QkCiR~gGkhnDldnVG~t-~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea 135 (451)
.-|+..+++|.|. +-..-|+. -.|..-+|++|.=|. +-..|.|..|++.|. .|||+...+.+.+-.
T Consensus 164 P~r~~y~g~vfR~-----e~~q~gr~REf~Q~giEiiG~~~~--~aDaEvi~l~~~~l~-~lgl~~~~~~i~i~~----- 230 (487)
T PLN02530 164 PLKWFAIGQCWRY-----ERMTRGRRREHYQWNMDIIGVPGV--EAEAELLAAIVTFFK-RVGITSSDVGIKVSS----- 230 (487)
T ss_pred CeEEEEEcCEEcC-----cCCCCCCccceEEcCeeEeCCCCc--chhHHHHHHHHHHHH-HcCCCCCceEEEEcC-----
Confidence 1366778899996 54555644 445777999997765 345799999999884 789976555554433
Q ss_pred HHHHHh
Q psy13352 136 YNIWTN 141 (451)
Q Consensus 136 ~~iW~~ 141 (451)
..+|..
T Consensus 231 ~~i~~~ 236 (487)
T PLN02530 231 RKVLQA 236 (487)
T ss_pred HHHHHH
Confidence 455554
No 112
>PF13393 tRNA-synt_His: Histidyl-tRNA synthetase; PDB: 3HRI_E 3HRK_A 3LC0_A 1Z7N_A 1Z7M_D 3NET_A 1H4V_B 3OD1_A 4E51_B 3RAC_A ....
Probab=20.98 E-value=70 Score=31.93 Aligned_cols=113 Identities=20% Similarity=0.169 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccc-----ccccccccccCCC--------------------CCCCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNS-----GMVQFKDVFLGIE--------------------KRNYL 58 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnA-----GM~qFkp~flG~~--------------------~p~~~ 58 (451)
..|++++.+.|+++|...|.+..+-|. +++...+ -|..|.+- .|.. .+...
T Consensus 14 ~~i~~~l~~~f~~~Gy~~i~~P~le~~---~~~~~~~~~~~~~~~~~~D~-~G~~l~LR~D~T~~iaR~~a~~~~~~~~~ 89 (311)
T PF13393_consen 14 ERIESKLREVFERHGYEEIETPLLEYY---ELFLDKSGEDSDNMYRFLDR-SGRVLALRPDLTVPIARYVARNLNLPRPK 89 (311)
T ss_dssp HHHHHHHHHHHHHTT-EE-B--SEEEH---HHHHCHSSTTGGCSEEEECT-TSSEEEE-SSSHHHHHHHHHHCCGSSSSE
T ss_pred HHHHHHHHHHHHHcCCEEEECCeEeec---HHhhhccccchhhhEEEEec-CCcEeccCCCCcHHHHHHHHHhcCcCCCc
Confidence 578999999999999999988665453 1111111 23333321 2221 12234
Q ss_pred CCcccccccccCCCCCCCCCCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEE
Q psy13352 59 RATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWI 126 (451)
Q Consensus 59 r~~~~QkCiR~gGkhnDldnVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~v 126 (451)
|.+.++++.|-..++. -.....+..-||.+|+-|. .--.|.|..|+|.|...+|+..=.|.+
T Consensus 90 r~~y~g~vfR~~~~~~----g~~re~~Q~g~Eiig~~~~--~~daEvi~l~~e~l~~~l~~~~~~i~i 151 (311)
T PF13393_consen 90 RYYYIGPVFRYERPGK----GRPREFYQCGFEIIGSSSL--EADAEVIKLADEILDRELGLENFTIRI 151 (311)
T ss_dssp EEEEEEEEEEEETTTT----TBESEEEEEEEEEESSSSH--HHHHHHHHHHHHHHHHHHTTTSEEEEE
T ss_pred eEEEEcceeeccccCC----CCCceeEEEEEEEECCCCH--HHHHHHHHHHHHHHHhhcCCCCcEEEE
Confidence 5667888888731111 1122344455888887743 347899999999997568874444443
No 113
>PF09862 DUF2089: Protein of unknown function (DUF2089); InterPro: IPR018658 This family consists of various hypothetical prokaryotic proteins.
Probab=20.47 E-value=1.5e+02 Score=26.64 Aligned_cols=56 Identities=23% Similarity=0.176 Sum_probs=32.4
Q ss_pred HHHHHHhhhhChhhhhcHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHH
Q psy13352 338 KDLIFNTYIIYKELKISVIKIEEILKK---EEECFRKTLKYGIKILENILLTKPDKLDGKLAFIL 399 (451)
Q Consensus 338 ~~vi~~m~~~ypeL~~~~~~I~~ii~~---EE~~F~~tL~~G~~~l~~~l~~~~~~l~g~~af~L 399 (451)
..+.+.|+-.||-++...+.|.+.|.. +++.=. ..-.++|+.+ + .+.|+.++|-++
T Consensus 53 Ke~e~~lgiSYPTvR~rLd~ii~~lg~~~~~~~~~~---~~~~~IL~~L-~--~GeIs~eeA~~~ 111 (113)
T PF09862_consen 53 KEMEKELGISYPTVRNRLDKIIEKLGYEEDEEEEEE---DERKEILDKL-E--KGEISVEEALEI 111 (113)
T ss_pred HHHHHHHCCCcHHHHHHHHHHHHHhCCCCCcccccc---hhHHHHHHHH-H--cCCCCHHHHHHH
Confidence 355666777888888877777776665 111111 1112334332 2 357999988764
No 114
>PRK14064 exodeoxyribonuclease VII small subunit; Provisional
Probab=20.03 E-value=1.2e+02 Score=24.99 Aligned_cols=32 Identities=22% Similarity=0.275 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHhc-CCCCCChHHHHHHHhcCC
Q psy13352 372 TLKYGIKILENILLT-KPDKLDGKLAFILYDTYG 404 (451)
Q Consensus 372 tL~~G~~~l~~~l~~-~~~~l~g~~af~LydtyG 404 (451)
|.+.+++.|++++++ .++.+|-++++++|.. |
T Consensus 7 sfEe~l~~LE~IV~~LE~~~l~Leesl~~ye~-G 39 (75)
T PRK14064 7 TFEEAIAELETIVEALENGSASLEDSLDMYQK-G 39 (75)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH-H
Confidence 345555667777766 4578999999999986 5
Done!