Query psy13352
Match_columns 451
No_of_seqs 181 out of 1072
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 17:14:20 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13352.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13352hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hy0_A Alanyl-tRNA synthetase; 100.0 5E-191 2E-195 1459.4 31.3 436 1-442 2-440 (441)
2 1yfs_A Alanyl-tRNA synthetase; 100.0 1E-185 4E-190 1427.3 24.0 421 1-443 3-431 (465)
3 2zze_A Alanyl-tRNA synthetase; 100.0 1E-150 5E-155 1228.8 21.8 371 1-441 57-500 (752)
4 2ztg_A Alanyl-tRNA synthetase; 100.0 2E-139 5E-144 1141.3 20.0 366 1-440 60-490 (739)
5 3rf1_A Glycyl-tRNA synthetase 95.9 0.024 8.3E-07 55.8 9.0 175 1-259 25-201 (311)
6 1j5w_A Glycyl-tRNA synthetase 95.4 0.057 1.9E-06 53.0 9.1 172 2-259 14-189 (298)
7 1nnh_A Asparaginyl-tRNA synthe 95.1 0.04 1.4E-06 54.2 7.4 104 4-117 19-141 (294)
8 1wyd_A Hypothetical aspartyl-t 93.0 0.29 1E-05 50.7 9.1 98 4-115 138-248 (429)
9 1x54_A Asparaginyl-tRNA synthe 90.5 0.43 1.5E-05 49.5 7.0 98 4-115 139-249 (434)
10 4dh4_A MIF; trimer, isomerase; 78.2 1.3 4.5E-05 36.9 3.0 30 101-130 72-101 (114)
11 3djh_A Macrophage migration in 75.4 2.1 7.2E-05 35.7 3.5 30 101-130 71-100 (114)
12 2xcz_A Possible ATLS1-like lig 75.1 2.2 7.5E-05 35.3 3.5 30 101-130 72-101 (115)
13 1hfo_A Migration inhibitory fa 75.1 2.2 7.5E-05 35.1 3.5 30 101-130 71-100 (113)
14 3b64_A Macrophage migration in 74.8 2.3 8E-05 35.1 3.6 32 99-130 70-101 (112)
15 2wkb_A Macrophage migration in 74.0 2.4 8.3E-05 35.8 3.6 31 100-130 71-101 (125)
16 3fwu_A Macrophage migration in 73.9 2.4 8.2E-05 36.8 3.6 99 19-130 6-122 (133)
17 1uiz_A MIF, macrophage migrati 73.6 2.5 8.6E-05 35.0 3.5 30 101-130 72-101 (115)
18 2os5_A Acemif; macrophage migr 73.0 2.6 9E-05 35.2 3.5 30 101-130 72-101 (119)
19 3kan_A D-dopachrome tautomeras 71.2 3 0.0001 35.2 3.5 29 102-130 73-101 (117)
20 3t5s_A Gilaa.00834.A, macropha 70.8 2.8 9.5E-05 36.5 3.3 30 101-130 93-122 (135)
21 3fwt_A Macrophage migration in 70.1 2.9 0.0001 36.2 3.2 30 101-130 93-122 (133)
22 1eov_A ASPRS, aspartyl-tRNA sy 66.4 7.3 0.00025 40.9 6.0 95 4-114 182-293 (487)
23 1otf_A 4-oxalocrotonate tautom 66.1 3.9 0.00013 29.6 2.8 30 101-130 15-44 (62)
24 2opa_A Probable tautomerase YW 65.4 4.2 0.00014 29.4 2.8 30 101-130 15-44 (61)
25 3abf_A 4-oxalocrotonate tautom 64.6 4.9 0.00017 29.3 3.1 29 102-130 17-45 (64)
26 1gyx_A YDCE, B1461, hypothetic 62.7 11 0.00038 28.9 5.0 40 101-141 16-57 (76)
27 3m20_A 4-oxalocrotonate tautom 56.3 13 0.00043 27.5 4.1 30 101-130 14-43 (62)
28 2aal_A Malonate semialdehyde d 53.7 9.8 0.00034 32.1 3.5 30 101-130 80-109 (131)
29 1mww_A Hypothetical protein HI 52.5 8.8 0.0003 32.3 3.0 30 101-130 74-103 (128)
30 2x4k_A 4-oxalocrotonate tautom 51.1 10 0.00035 27.1 2.8 29 102-130 19-47 (63)
31 3n4h_A Putative tautomerase; C 50.0 11 0.00036 32.7 3.2 30 101-130 77-106 (148)
32 3mb2_A 4-oxalocrotonate tautom 49.4 12 0.0004 28.5 3.0 30 101-130 16-45 (72)
33 3m21_A Probable tautomerase HP 48.5 12 0.00042 27.8 3.0 30 101-130 18-47 (67)
34 1c07_A Protein (epidermal grow 48.1 60 0.002 25.3 7.2 50 387-436 23-76 (95)
35 1eh2_A EPS15; calcium binding, 45.1 56 0.0019 26.7 6.8 46 388-433 28-77 (106)
36 1qjt_A EH1, epidermal growth f 44.9 81 0.0028 25.0 7.6 47 387-433 24-74 (99)
37 3ry0_A Putative tautomerase; o 42.8 16 0.00055 27.0 2.8 30 101-130 15-44 (65)
38 3i7f_A Aspartyl-tRNA synthetas 42.7 30 0.001 37.0 5.8 83 4-100 248-347 (548)
39 3ej9_A Alpha-subunit of trans- 40.3 18 0.00061 28.0 2.8 30 101-130 16-45 (76)
40 3a5y_A GENX, putative lysyl-tR 39.5 10 0.00035 38.0 1.6 100 4-119 40-161 (345)
41 1fi6_A EH domain protein REPS1 35.8 73 0.0025 24.6 5.8 48 387-434 22-73 (92)
42 3nem_A Aspartyl-tRNA synthetas 34.9 13 0.00044 38.5 1.5 98 4-113 141-258 (438)
43 1n9w_A Aspartyl-tRNA synthetas 34.3 13 0.00046 38.2 1.5 99 4-116 129-241 (422)
44 3m4p_A Ehasnrs, asparaginyl-tR 33.7 14 0.00048 38.4 1.6 85 4-100 160-257 (456)
45 3bju_A Lysyl-tRNA synthetase; 33.4 14 0.00047 39.2 1.4 95 4-113 180-297 (521)
46 2xgt_A Asparaginyl-tRNA synthe 33.0 15 0.0005 37.9 1.6 95 4-112 136-243 (435)
47 3a74_A Lysyl-tRNA synthetase; 32.6 15 0.00051 38.7 1.5 100 4-115 178-290 (493)
48 1e1o_A Lysyl-tRNA synthetase, 32.6 15 0.00051 38.8 1.5 99 4-114 187-298 (504)
49 4ex5_A Lysine--tRNA ligase; st 32.1 15 0.00052 39.0 1.6 95 4-113 208-325 (529)
50 3i7f_A Aspartyl-tRNA synthetas 31.8 16 0.00053 39.2 1.5 28 235-262 512-539 (548)
51 1eov_A ASPRS, aspartyl-tRNA sy 31.6 16 0.00054 38.3 1.5 28 235-262 451-478 (487)
52 3il3_A 3-oxoacyl-[acyl-carrier 31.3 16 0.00056 35.5 1.5 76 87-180 209-285 (323)
53 2zc2_A DNAD-like replication p 30.4 41 0.0014 25.9 3.4 29 389-417 16-47 (78)
54 4gyx_A Type III collagen fragm 29.7 19 0.00066 23.6 1.1 10 171-180 19-28 (31)
55 1iq3_A Ralbp1-interacting prot 29.5 75 0.0026 25.9 5.1 47 387-433 35-85 (110)
56 1c0a_A Aspartyl tRNA synthetas 29.0 19 0.00064 38.7 1.6 29 235-263 527-555 (585)
57 1l0w_A Aspartyl-tRNA synthetas 28.4 20 0.00067 38.5 1.6 29 235-263 521-549 (580)
58 3h78_A PQS biosynthetic enzyme 28.3 16 0.00054 36.3 0.8 75 88-180 240-315 (359)
59 3fia_A Intersectin-1; EH 1 dom 26.5 1.1E+02 0.0038 26.1 5.7 46 388-433 46-95 (121)
60 1apy_A Aspartylglucosaminidase 24.8 84 0.0029 28.4 4.9 51 103-180 107-160 (162)
61 4i4d_A Peptide synthetase NRPS 23.7 45 0.0015 26.2 2.6 24 135-171 21-44 (93)
62 2dq3_A Seryl-tRNA synthetase; 23.6 29 0.001 35.6 1.8 106 4-120 176-316 (425)
63 3mlc_A FG41 malonate semialdeh 21.7 57 0.0019 28.0 3.0 29 101-130 80-108 (136)
64 2pmy_A RAS and EF-hand domain- 21.2 2.3E+02 0.0078 21.3 6.3 45 387-431 40-88 (91)
65 2kn2_A Calmodulin; S MAPK phos 20.3 1.4E+02 0.005 22.0 4.8 47 387-433 22-74 (92)
No 1
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein biosynthesis, NUC binding, amino acid-binding, ATP-binding, metal-binding; HET: G5A EPE; 1.90A {Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A* 3hxw_A* 3hxx_A* 3hxy_A*
Probab=100.00 E-value=5e-191 Score=1459.42 Aligned_cols=436 Identities=59% Similarity=1.042 Sum_probs=424.1
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVG 80 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG 80 (451)
+|++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++||++|+||||||||+|||||||||||
T Consensus 2 ~~~~eiR~~Fl~FF~~kgH~~v~Ssslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~~~sQkCiR~gGKHnDlenVG 81 (441)
T 3hy0_A 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRATTSQRCVRAGGKHNDLENVG 81 (441)
T ss_dssp CCHHHHHHHHHHHHHHTTCEECCCCCSSCSSCTTCSSCCSGGGGGHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT
T ss_pred CCHHHHHHHHHHHHHhCCCeEcCCCCccCCCCCCceeecccchhhhhhhcCCCCCCCCCccccccceecCCCCCCHHhhC
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhccccccccchHHHHHHHHHHhh--hhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCC
Q psy13352 81 YTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLT--QIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKN 158 (451)
Q Consensus 81 ~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT--~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~ 158 (451)
+|+|||||||||||||||||||+|||+||||||| ++|||||+|||||||++|+||++||++.+|||++||+++|++|+
T Consensus 82 ~t~rHhTfFEMLGNfSFGDYFK~eAI~~Awe~LT~~~~lgl~~erL~vTvf~~D~Ea~~iW~~~~Gvp~~rI~~~g~~~~ 161 (441)
T 3hy0_A 82 YTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFALPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKG 161 (441)
T ss_dssp TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHCTTTTCCCGGGEEEEEETTCHHHHHHHHHTTCCCGGGEEEECSTTS
T ss_pred CCCccccceeeccccccchhhHHHHHHHHHHHhCCCCccCCCHHHeEEEEeCCCHHHHHHHHHccCCCHHHeeecCcccc
Confidence 9999999999999999999999999999999999 67999999999999999999999999999999999999996544
Q ss_pred CCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccc
Q psy13352 159 SPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVD 238 (451)
Q Consensus 159 ~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~ID 238 (451)
.+ |.+||||+||+|||||||||||||+|+++.||+++++++||+|||||||||||||||+++ | +|.|||+||||
T Consensus 162 ~~-y~~dNFW~mG~tGPCGPCsEI~yD~g~~~~~g~~~~~~~d~~r~lEIWNlVFmQy~r~~~---g--~l~pLp~k~ID 235 (441)
T 3hy0_A 162 AP-YASDNFWQMGDTGPCGPCTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAD---G--TMEPLPKPSVD 235 (441)
T ss_dssp BT-TBBTTEEESSSSEEEEEEEEEEEECCTTSCCCCTTSTTTTSSSEEEEEEEEEEEEEECTT---S--CEEEEEEEEEE
T ss_pred cc-ccccCchhcCCCcCCcCCeeEEEecCcccCCCCCCCCCCCCCCeEEEeeeeeeeeeecCC---C--ccccCCCCcee
Confidence 44 777999999999999999999999999998888899999999999999999999999999 9 99999999999
Q ss_pred cCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCCCCcceEEeechhhhhhhhhhcCcccCCCCCchHHHHHHHH
Q psy13352 239 TGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRR 318 (451)
Q Consensus 239 TGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~~~~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRR 318 (451)
||||||||||||||++||||||+|.|||+++++++|+.+..+.++||||||+||++|||+|||+|||+||||||||||||
T Consensus 236 TGmGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~~~~~~s~rvIADH~R~~~f~iaDGv~PsNeGrGYVLRRilRR 315 (441)
T 3hy0_A 236 TAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIADGVMPSNENRGYVLRRIIRR 315 (441)
T ss_dssp EEEEHHHHHHHHTTCSSGGGSHHHHHHHHHHHHHHTCCCTTCHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHcCCCccccchhHHHHHHHHHHHhCCCccccceeEEecchHHHHHHHHhcCcccCCCCcchhHHHHHHH
Confidence 99999999999999999999999999999999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CCCCCChHHHH
Q psy13352 319 AIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLT-KPDKLDGKLAF 397 (451)
Q Consensus 319 a~r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~-~~~~l~g~~af 397 (451)
|+|++++||++.|||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++.+++ +++.|||++||
T Consensus 316 Avr~g~~Lg~~~~fl~~Lv~~v~~~m~~~yPeL~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~l~g~~af 395 (441)
T 3hy0_A 316 AVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQVEQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAF 395 (441)
T ss_dssp HHHHHHHHTCCSCCGGGGHHHHHHHHGGGGHHHHHTHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHSCCSSEECHHHHH
T ss_pred HHHHHHHhCCCCccHHHHHHHHHHHHhhhhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987 44689999999
Q ss_pred HHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhccc
Q psy13352 398 ILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSK 442 (451)
Q Consensus 398 ~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~~~ 442 (451)
+||||||||+|||++||+|+|++||+++|+++|++||+|||++++
T Consensus 396 ~LyDTyGfP~dLt~eia~e~g~~vD~~~F~~~m~~qr~rar~~~~ 440 (441)
T 3hy0_A 396 RLYDTYGFPVDLTADVCRERNIKVDEAGFEAAMEEQRRRAREASG 440 (441)
T ss_dssp HHHHHHCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHHHHHHHC
T ss_pred hhhhcCCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999998754
No 2
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif, amino acid binding, ligase; 2.08A {Aquifex aeolicus} SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A 1ygb_A 3htz_A
Probab=100.00 E-value=1e-185 Score=1427.34 Aligned_cols=421 Identities=51% Similarity=0.901 Sum_probs=406.8
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccccccccCCCCCCCCCCcccccccccCCCCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVG 80 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~flG~~~p~~~r~~~~QkCiR~gGkhnDldnVG 80 (451)
||++|||++||+||++|||++||||||||+||||||||||||+||||||+|+++||++|+||||||||+|||||||||||
T Consensus 3 ~~~~eiR~~Fl~FF~~kgH~~vpSsslvp~~DptLLftnAGM~~FKp~flG~~~p~~~r~t~sQkCiRag~~hNDlenVG 82 (465)
T 1yfs_A 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRATSCQKCLRVSGKHNDLEQVG 82 (465)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSSCTTCTTCSSCCSTTSTTHHHHHTSSCCSCSEEEEEEEEECEETTEECGGGBT
T ss_pred CCHHHHHHHHHHHHHhCCCEEecCCCcccCCCCCcceeccchhhhhHHhcCCCCCCCCceeccccccccCCCcccHhhcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCC
Q psy13352 81 YTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSP 160 (451)
Q Consensus 81 ~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~ 160 (451)
+|+|||||||||||||||||||+|||+|||||||++|||||+|||||||++|+||++||++.+|||++||+++|.+
T Consensus 83 ~t~rHhTfFEMLGNfSFGDYFK~eAI~~AwE~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~G~p~~rI~~~g~~---- 158 (465)
T 1yfs_A 83 YTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLPKEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE---- 158 (465)
T ss_dssp TBSSCCSEEEEEEEEESSSCCHHHHHHHHHHHHHHTSCCCGGGEEEEEETTCHHHHHHHHTTTCCCGGGEEEECHH----
T ss_pred CCCCccchheeccccchhhhhHHHHHHHHHHHHHhhcCCCHHHeEEEEeCCCHHHHHHHHHhcCCCHHHeeeCCCc----
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccccC
Q psy13352 161 LYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240 (451)
Q Consensus 161 ~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~IDTG 240 (451)
||||+||+|||||||||||||+|+.++ .|+|||||||||||||||+++ | +|.|||+||||||
T Consensus 159 ----dNFW~mG~tGPCGPCsEI~yD~g~~~~---------~~~r~lEIWNlVFmQy~r~~~---g--~l~pLp~k~IDTG 220 (465)
T 1yfs_A 159 ----DNFWQMGDVGPCGPSSEIYVDRGEEYE---------GDERYLEIWNLVFMQYNRDEN---G--VLTPLPHPNIDTG 220 (465)
T ss_dssp ----HHEEESSSSEEEEEEEEEEEECCTTSC---------HHHHEEEEEEEEEEEEEECTT---S--CEEEEEEEEEEEE
T ss_pred ----CCcccCCCCcCCCCCeEEEEccCCCCC---------CCCCEEEeeeeeeeEEEecCC---C--ccccCCCCceecC
Confidence 999999999999999999999998763 178999999999999999999 9 9999999999999
Q ss_pred chHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCC----CCcceEEeechhhhhhhhhhcCcccCCCCCchHHHHHH
Q psy13352 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNL----KNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRII 316 (451)
Q Consensus 241 mGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~----~~~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRril 316 (451)
||||||||||||++||||||+|.|||++|++++|+++. .+.|+||||||+||++|||+|||+|||+||||||||||
T Consensus 221 mGLERla~vlQg~~snYdtDlf~pii~~i~~~~g~~Y~~~~~~d~s~rvIADH~R~~~f~I~DGv~PsN~GrGYVLRRil 300 (465)
T 1yfs_A 221 MGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIRRIL 300 (465)
T ss_dssp EEHHHHHHHHTTCSSGGGSTTTHHHHHHHHHHHCCCTTSCHHHHHHHHHHHHHHHHHHHHHHTTCCCCSBHHHHHHHHHH
T ss_pred cCHHHHHHHHcCCCccchhhhHHHHHHHHHHHhCCCCCCCcccceeEEEEcchhhhhhhhhccccccCCCCcchHHHHHH
Confidence 99999999999999999999999999999999998752 35699999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchhhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C--C-CCCC
Q psy13352 317 RRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLT-K--P-DKLD 392 (451)
Q Consensus 317 RRa~r~~~~lg~~~~fl~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~-~--~-~~l~ 392 (451)
|||+|+|++||++.|||++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++ + + +.||
T Consensus 301 RRavr~g~~Lg~~~~fl~~Lv~~v~~~m~~~yPel~~~~~~I~~vi~~EE~~F~~TL~~G~~~l~~~~~~~~~~~~~~l~ 380 (465)
T 1yfs_A 301 RRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLS 380 (465)
T ss_dssp HHHHHHHHHTTCCSCCHHHHHHHHHHHHTTTCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEC
T ss_pred HHHHHHHHHhCCCchhHHHHHHHHHHHHhccCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 2 2 3699
Q ss_pred hHHHHHHHhcCCCCHHhHHHHHHHcCCccCHhhHHHHHHHHHHHHhhcccC
Q psy13352 393 GKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSKF 443 (451)
Q Consensus 393 g~~af~LydtyGfP~dlt~eia~e~gi~vd~~~f~~~~~~qr~~sr~~~~~ 443 (451)
|++||+||||||||+|||++||+|+|++||+++|+++|++||+|||++++.
T Consensus 381 G~~af~LyDTyGfP~dLt~eia~e~g~~vD~~gF~~~m~~q~~rar~~~~~ 431 (465)
T 1yfs_A 381 GKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCELEEQRERARKHFKV 431 (465)
T ss_dssp HHHHHHHHHTSCCCHHHHHHHHHTTTCEECHHHHHHHHHHHHHTTTTC---
T ss_pred HHHHHhhhhccCCCHHHHHHHHHHcCCeeCHHHHHHHHHHHHHHHHhhhhc
Confidence 999999999999999999999999999999999999999999999988543
No 3
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A {Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Probab=100.00 E-value=1.5e-150 Score=1228.83 Aligned_cols=371 Identities=25% Similarity=0.418 Sum_probs=352.5
Q ss_pred CChHHHHHHHHHhhhhCC---CeeecCCCCccCCCCCcccccccccccccccc-CCCCCCCCCCcccccccccCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKG---HTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFL-GIEKRNYLRATSIQRCLRAGGKHNDL 76 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~g---H~~vps~slvp~~dptllFtnAGM~qFkp~fl-G~~~p~~~r~~~~QkCiR~gGkhnDl 76 (451)
||++|||++||+||++|| |++||||||||+||||||||||||+||||||+ |+++||++|+||||||||+ |||
T Consensus 57 ~~~~eiR~~fl~fF~~kg~~~H~~v~s~~lvp~~dptllftnAGm~~fk~~f~~G~~~pp~~r~~~~QkCiR~----~Dl 132 (752)
T 2zze_A 57 YTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPPANPLVISQPSIRF----TDI 132 (752)
T ss_dssp CCHHHHHHHHHHHHHTCSSSCCEECCCCCSSCTTCSSCSSCCSGGGGGTTHHHHTSSCCSSSSEEEEEEEECC----TTG
T ss_pred CCHHHHHHHHHHHHhccCCCcceEEeccCcccCCCCCeeeeecchhhhhHhhcCCCcCCCCCCccccccceec----CcH
Confidence 789999999999999999 99999999999999999999999999999997 9999999999999999998 899
Q ss_pred CCCCCCCCchhhhhhhcccccc-----ccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCcee
Q psy13352 77 ENVGYTNYHHTFFQMLGNWSFG-----DYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVI 151 (451)
Q Consensus 77 dnVG~t~rHhTfFEMLGNfSFG-----dYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~ 151 (451)
||||+|+||||||||||||||| ||||+|||+|||||||++||||++||+.
T Consensus 133 enVG~t~rHhTfFEMlGnfSFg~~~~~dYfK~eaI~~awe~lT~~~gl~~~ri~~------------------------- 187 (752)
T 2zze_A 133 DNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFEFFTKELXMXPEDITF------------------------- 187 (752)
T ss_dssp GGTTTSSSCCSEEEEEEEEEEECTTCCCCCHHHHHHHHHHHHHHTSCCCGGGEEE-------------------------
T ss_pred hhcCCCCcchhHHHhCccceeCCCchHHHHHHHHHHHHHHHHhhhhhcchhheee-------------------------
Confidence 9999999999999999999999 9999999999999999999999999862
Q ss_pred ecCCCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccc-------------cc
Q psy13352 152 RIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQF-------------NK 218 (451)
Q Consensus 152 ~~g~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy-------------~r 218 (451)
+ ||||+|| |||||||||||| | ||||||||||| ++
T Consensus 188 ----~--------dNfW~~G--GpcGPcsEI~~d-------g------------lEiwNlVFmq~~~~~~~~~~~~~~~~ 234 (752)
T 2zze_A 188 ----K--------ENPWAGG--GNAGPAFEVLYR-------G------------LEVATLVFMQYXXAPENAPQDQVVVI 234 (752)
T ss_dssp ----E--------ECCEEET--TEEECEEEEEET-------T------------EEEEEEEEEEEEECCTTCCSCCEEET
T ss_pred ----c--------cCcccCC--CCCCCceeEEEC-------C------------Eeeeeeeeeeeccccccccccchhcc
Confidence 3 9999999 999999999996 1 99999999999 88
Q ss_pred cCCCCCCCcccccCCCCccccCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCC------------------C-
Q psy13352 219 EINPKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNL------------------K- 279 (451)
Q Consensus 219 ~~d~~~G~~~l~~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~------------------~- 279 (451)
++ | +|.|||+||||||||||||||||||++||||| +|.|||++|++++|+.+. .
T Consensus 235 -~~---g--~~~~Lp~~~IDTGmGlERl~~vlQg~~snydt-~f~pii~~~~~~~g~~y~~~~~~~~~a~~~g~~~~~~~ 307 (752)
T 2zze_A 235 -XG---E--KYIPMETXVVDTGYGLERLVWMSQGTPTAYDA-VLGYVVEPLXXMAGIEKIDEKILMENSRLAGMFDIEDL 307 (752)
T ss_dssp -TT---E--EEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HSHHHHHHHHHHHTCCCCCHHHHHHHHHHHHTCCSSSS
T ss_pred -cC---C--eeeeCCccccccccCHHHHHHHHcCCCchHHH-HHHHHHHHHHHhcCCCccchhhhhhhhhccccCCccch
Confidence 47 8 99999999999999999999999999999999 999999999999998731 1
Q ss_pred ---------------------------CcceEEeechhhhhhhhhhcCcccCCCCCchHHHHHHHHHHHHHHHhCCCCch
Q psy13352 280 ---------------------------NNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIF 332 (451)
Q Consensus 280 ---------------------------~~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~f 332 (451)
+.++||||||+||++|||+|||+|||+|||||||||||||+|++++||++.|
T Consensus 308 ~~~~~~~~~va~~~~~~~~~~~~~~~~~~~~rvIaDH~R~~~f~i~DGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~- 386 (752)
T 2zze_A 308 GDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLADGVVPSNVXAGYLARLLIRKSIRHLRELGLEVP- 386 (752)
T ss_dssp SCHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSSSHHHHHHHHHHHHHHHHHHHTTCCCC-
T ss_pred hhHHHHHHHHHHhcCCCHHHHhhhccccceEEEehhhhhhhhhhcccCCCcCccchhHHHHHHHHHHHHHHHHhCCCcc-
Confidence 3589999999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-C---CCCCChHHHHHHHhcCCCCHH
Q psy13352 333 LYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLT-K---PDKLDGKLAFILYDTYGFPID 408 (451)
Q Consensus 333 l~~Lv~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~-~---~~~l~g~~af~LydtyGfP~d 408 (451)
|++||++|++.|++.||||.++++.|++||+.||++|.+||++|+++|++++++ + .+.|||++||+||||||||+|
T Consensus 387 l~~lv~~~~~~m~~~ypel~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~~~~~~~~l~g~~af~LyDTyGfP~d 466 (752)
T 2zze_A 387 LSEIVALHIXELHKTFPEFXEMEDIILEMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPE 466 (752)
T ss_dssp HHHHHHHHHHHHTTTCTHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCSCCCHHHHHHHHHHHCCCHH
T ss_pred hhHHHHHHHHHhhhhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHhccCCCHH
Confidence 999999999999999999999999999999999999999999999999999986 2 357999999999999999999
Q ss_pred hHHHHHHHcCCccCHh-hHHHHHHHHHHHHhhcc
Q psy13352 409 LTIDICKEHNVSFNKN-DFILEMEKQRNNARLNS 441 (451)
Q Consensus 409 lt~eia~e~gi~vd~~-~f~~~~~~qr~~sr~~~ 441 (451)
||++||+|+|++||++ +|+++|++||++||++.
T Consensus 467 lt~~ia~e~g~~vd~~~~F~~~m~~q~~~~r~~~ 500 (752)
T 2zze_A 467 IVXEIAEKEGVKVNIPDNFYSMVAKEAERTKEEK 500 (752)
T ss_dssp HHHHHHTTSSCCCCCCTTHHHHHHGGGGCC----
T ss_pred HHHHHHHHcCCccCCcccHHHHHHHHHHHHhhcc
Confidence 9999999999999998 89999999999999763
No 4
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase, aminoacyl-tRNA synthetase, ATP-binding, cytoplasm, ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Probab=100.00 E-value=1.6e-139 Score=1141.27 Aligned_cols=366 Identities=28% Similarity=0.500 Sum_probs=349.7
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccccc-CCCCCCCCCCcccccccccCCCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFL-GIEKRNYLRATSIQRCLRAGGKHNDLENV 79 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~fl-G~~~p~~~r~~~~QkCiR~gGkhnDldnV 79 (451)
||++|||++||+||+++||+++|||||||+||||||||||||+||||+|+ |..+||++|+|++|||+|+ ||||||
T Consensus 60 ~~~~eir~~f~~ff~~~gh~~~~s~~lvp~~dptllft~agm~~fkp~~~~g~~~p~~~~~~~~Q~ciR~----~D~env 135 (739)
T 2ztg_A 60 FELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANPLTISQPCIRL----DDLDSV 135 (739)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCCSBCTTCSSBSBCCSGGGGGTTTTTTSSSCCSSSSEEEEEEEECG----GGGGGT
T ss_pred CCHHHHHHHHHHHHHHCCCEEeCCcCcCCCCCCCceeeecChhhCcHhHhCCCCCCCCCCcccccccccC----cccccC
Confidence 78999999999999999999999999999999999999999999999997 9999999999999999999 899999
Q ss_pred CCCCCchhhhhhhcccccc-----ccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecC
Q psy13352 80 GYTNYHHTFFQMLGNWSFG-----DYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIG 154 (451)
Q Consensus 80 G~t~rHhTfFEMLGNfSFG-----dYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g 154 (451)
|+|+||||||||||||||| ||||+|||+|||||| ++|||||+||..
T Consensus 136 g~t~rH~tfFeMlgn~sFg~~~~~dYfK~eai~~~~e~l-~~~g~~~~~i~~---------------------------- 186 (739)
T 2ztg_A 136 GRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELL-NELGVKKEDIVY---------------------------- 186 (739)
T ss_dssp TTSSSCCSEEEEEEEEEEEBTTBCSCCHHHHHHHHHHHH-HHHTCCGGGCEE----------------------------
T ss_pred CCCCcchhhhhccCccccCCCccccchHHHHHHHHHHHH-HHhCCCHHHeee----------------------------
Confidence 9999999999999999999 999999999999999 889999998742
Q ss_pred CCCCCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccc----
Q psy13352 155 DKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLT---- 230 (451)
Q Consensus 155 ~~~~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~---- 230 (451)
+ ||||+|| |||||||||||| | |||||+|||||||+++ | .|.
T Consensus 187 -~--------dnfW~~g--Gp~Gpc~Ei~~d-------g------------~EiwnlVfmq~~r~~~---g--~~~~~~~ 231 (739)
T 2ztg_A 187 -K--------EEPWAGG--GNAGPCLEAIVG-------G------------LEVATLVFMNLEEHPE---G--DIEIKGA 231 (739)
T ss_dssp -E--------EEEEEET--TEEEEEEEEEET-------T------------EEEEEEEEEEEEECTT---C--CEEETTE
T ss_pred -c--------cCcccCC--CCCCCeeEEEEC-------C------------EEeeeeeeEEeeecCC---C--ceeecCc
Confidence 3 9999999 999999999996 2 9999999999999999 8 676
Q ss_pred ---cCCCCccccCchHHHHHHHHhcCCCccchhhhHHHHHHHHHHhCCCCC----------------------CC-----
Q psy13352 231 ---KLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNL----------------------KN----- 280 (451)
Q Consensus 231 ---~Lp~k~IDTGmGLERl~~vlQg~~snYdtDlF~pli~~i~~~~g~~~~----------------------~~----- 280 (451)
|||+|+||||||||||||+|||++||||| +|.|||++|++++|+++. .+
T Consensus 232 ~y~~l~~~~iDtG~GlER~~~~lqg~~s~yd~-~f~pii~~~~~~~g~~y~~~~~~~~~~~~~~~~~~G~~~~~~~~~i~ 310 (739)
T 2ztg_A 232 RYRKMDNYIVDTGYGLERFVWASKGTPTVYDA-IFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLN 310 (739)
T ss_dssp EEEEEEEEEEEEEEEHHHHHHHHHCCSSHHHH-HCHHHHHHHHHTSCCSSCTTCHHHHHHHHHHHHHHHHHTTCCTHHHH
T ss_pred cccCCCCCeEecCcCHHHHHHHHcCCCchHHh-hHHHHHHHHHHHhCCCccccccchhhhhhhhhhcccccCcccchhHH
Confidence 99999999999999999999999999999 999999999999998741 11
Q ss_pred ------------------------cceEEeechhhhhhhhhhcCcccCCCCCchHHHHHHHHHHHHHHHhCCCCchhhhh
Q psy13352 281 ------------------------NSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKL 336 (451)
Q Consensus 281 ------------------------~a~rvIaDH~Ra~~f~IaDGv~PsN~GrGYvlRrilRRa~r~~~~lg~~~~fl~~L 336 (451)
.++||||||+||++|||+|||+|||+|||||||||||||+|++++||++.| |++|
T Consensus 311 ~~~~~~a~~~~~~~~~~~~~~~~~~~~rviaDH~R~~~f~i~DGv~PsN~grGYvlRrilRRa~r~~~~lg~~~~-l~~l 389 (739)
T 2ztg_A 311 QLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMIRRSLRLAEELELGLD-LYDL 389 (739)
T ss_dssp HHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCSSHHHHHHHHHHHHHHHHHHHTTCSSC-HHHH
T ss_pred HHHHHhhhhcccchhhhhhhccccceEEEEecHHHHHHHHhccCcccCCCCcchHHHHHHHHHHHHHHHhCCCcc-HHHH
Confidence 489999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHhhhhChhhhhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChHHHHHHHhcCCCCHHhHHHHHHH
Q psy13352 337 VKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKE 416 (451)
Q Consensus 337 v~~vi~~m~~~ypeL~~~~~~I~~ii~~EE~~F~~tL~~G~~~l~~~l~~~~~~l~g~~af~LydtyGfP~dlt~eia~e 416 (451)
|++|++.|++ ||.++++.|++||+.||++|.+||++|+++|++++++. +.|||++||+||||||||+|||++||+|
T Consensus 390 v~~~~~~m~~---el~~~~~~I~~vi~~EE~~F~~Tl~~G~~~l~~~~~~~-~~l~g~~af~LyDTyGfP~dlt~~ia~e 465 (739)
T 2ztg_A 390 VEMHKKILGF---EFDVPLSTVQEILELEKERYRTTVSKGTRLVERLVERK-KKLEKDDLIELYDSHGIPVELAVGIAAE 465 (739)
T ss_dssp HHHHHHHHCC---CCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-SBCCHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999999998 99999999999999999999999999999999999872 1299999999999999999999999999
Q ss_pred cCCccCHh-hHHHHHHHHHHHHhhc
Q psy13352 417 HNVSFNKN-DFILEMEKQRNNARLN 440 (451)
Q Consensus 417 ~gi~vd~~-~f~~~~~~qr~~sr~~ 440 (451)
+|++||++ +|+++|++||++||++
T Consensus 466 ~g~~vd~~~~F~~~m~~q~~~a~~~ 490 (739)
T 2ztg_A 466 KGAEVEMPKDIYAELAKRHSKAEKV 490 (739)
T ss_dssp TTCBCCCCTTHHHHHHHTTSBCCCC
T ss_pred cCCeeCCcccHHHHHHHHHHHHhhc
Confidence 99999998 8999999999999876
No 5
>3rf1_A Glycyl-tRNA synthetase alpha subunit; glycyl-tRNA synthetase subunit alpha, alpha/beta protein, ST genomics; 2.20A {Campylobacter jejuni} PDB: 3rgl_A* 3ufg_A*
Probab=95.93 E-value=0.024 Score=55.82 Aligned_cols=175 Identities=25% Similarity=0.378 Sum_probs=103.3
Q ss_pred CChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-ccCCCCCCCCCCccccccccc-CCCCCCCCC
Q psy13352 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDV-FLGIEKRNYLRATSIQRCLRA-GGKHNDLEN 78 (451)
Q Consensus 1 m~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~-gGkhnDldn 78 (451)
||-++|--+--+|..++|..++.++.+ . .|--.|-|. |+..--|..=+++=+|+|-|. -|+..+ |
T Consensus 25 ~~fQ~iIl~Lq~fWa~qGC~i~QPyD~-E----------vGAGT~hPaTfLRalGpePw~~AYVqPsRRP~DGRYGe--N 91 (311)
T 3rf1_A 25 MTFSQMILNLQNYWQEQGCAIMQPYDM-P----------AGAGTFHPATFLRSLGKKPWAAAYVAPSRRPTDGRYGE--N 91 (311)
T ss_dssp CCHHHHHHHHHHHHHTTTCEECCCCSS-C----------CSSGGGSHHHHTTTSSSSCEEEEEEEEEECGGGCCTTC--C
T ss_pred CcHHHHHHHHHHHHHHCCCEEECCccc-c----------ccCCCCCHHHHHHhcCCCcceeeeeccCCCCCCCCcCC--C
Confidence 677899999999999999999988874 2 234478886 776555655689999999998 121111 2
Q ss_pred CCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCC
Q psy13352 79 VGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKN 158 (451)
Q Consensus 79 VG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~ 158 (451)
--+ -.||.=|..+=--|-.+- .+.=.+-| +.+||||. +|=+||-.
T Consensus 92 PNR-Lq~yyQfQVilKPsP~ni-----QeLYL~SL-~alGId~~-------------------------~HDIRFVE--- 136 (311)
T 3rf1_A 92 PNR-LGAYYQFQVLIKPSPDNI-----QELYLKSL-ENLGFDLK-------------------------SHDIRFVE--- 136 (311)
T ss_dssp SSC-CSEEEEEEEEEESCCTTH-----HHHHHHHH-HHTTCCGG-------------------------GSCEEEEE---
T ss_pred chh-hhhheeeEEEEcCCCccH-----HHHHHHHH-HHhCCCcc-------------------------ccCeeEec---
Confidence 221 334444554433343321 11111111 23455443 24455542
Q ss_pred CCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCccc
Q psy13352 159 SPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVD 238 (451)
Q Consensus 159 ~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~ID 238 (451)
|| |+-=.-|--|-==|+.-| | +||=- |+=|.+ .. | +.+. .-.+.
T Consensus 137 ------Dn-WEsPTLGAWGLGWEVWld-------G------------MEVTQ--FTYFQQ-vG---G-i~c~---pv~~E 180 (311)
T 3rf1_A 137 ------DN-WESPSLGAWGLGWEVWLD-------G------------MEVTQ--FTYFQQ-VG---G-IAVD---LVSAE 180 (311)
T ss_dssp ------CC-EEETTTTEEEEEEEEEET-------T------------EEEEE--EEEEEE-ET---T-EECS---SCCEE
T ss_pred ------cC-CCCCcccccccceEEEEc-------C------------eeEee--eeeeee-eC---C-cccc---cccee
Confidence 45 543222555544566553 2 67653 333333 33 3 2344 44566
Q ss_pred cCchHHHHHHHHhcCCCccch
Q psy13352 239 TGMGLERLASILQNVYNNYET 259 (451)
Q Consensus 239 TGmGLERl~~vlQg~~snYdt 259 (451)
-=+||||||+.|||+.|+||.
T Consensus 181 ITYGLERlamylQ~vd~vyDl 201 (311)
T 3rf1_A 181 ITYGLERIAMYLQNVDNVYDI 201 (311)
T ss_dssp EEEEHHHHHHHHTTCSSGGGS
T ss_pred eehhHHHHHHHHhCCCeeeec
Confidence 779999999999999999986
No 6
>1j5w_A Glycyl-tRNA synthetase alpha chain; structural genomics, TM0216, JCSG, PSI, protein structure initiative; 1.95A {Thermotoga maritima} SCOP: d.104.1.1
Probab=95.37 E-value=0.057 Score=52.98 Aligned_cols=172 Identities=27% Similarity=0.355 Sum_probs=102.9
Q ss_pred ChHHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccccc-ccCCCCCCCCCCcccccccccCCCCCCC---C
Q psy13352 2 KSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDV-FLGIEKRNYLRATSIQRCLRAGGKHNDL---E 77 (451)
Q Consensus 2 ~~~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFkp~-flG~~~p~~~r~~~~QkCiR~gGkhnDl---d 77 (451)
--++|--+--+|..++|..++.++.+= .|--.|-|. |+..--|..=+++=+|+|.|. .|= |
T Consensus 14 ~fQ~iIl~Lq~fWa~~GC~i~QpyD~E-----------vGAGT~~PaTfLRaLGpepw~~AYVqPsRRP----~DGRYGe 78 (298)
T 1j5w_A 14 YLQDVIMKLNDFWASKGCLLEQPYDME-----------VGAGTFHPATFFGSLRKGPWKVAYVQPSRRP----TDGRYGE 78 (298)
T ss_dssp CHHHHHHHHHHHHHHTTCEECCCCSSC-----------CSSGGGSHHHHTGGGCSSCEEEEEEEEEECC----C-----C
T ss_pred HHHHHHHHHHHHHHHCCCEEEcCcccc-----------cccccCCHHHHHHhcCCCcceeeeeccCCCC----CCCCcCC
Confidence 346788888999999999999888742 234578885 665544555679999999998 441 1
Q ss_pred CCCCCCCchhhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCC
Q psy13352 78 NVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKK 157 (451)
Q Consensus 78 nVG~t~rHhTfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~ 157 (451)
|--+ -.||.=|..+=--|-.+- .+.=.+-| +.+|||+. +|=+||-.
T Consensus 79 NPNR-Lq~y~QfQVilKPsP~ni-----QeLYL~SL-~alGid~~-------------------------~HDIRFVE-- 124 (298)
T 1j5w_A 79 NPNR-LQRYFQYQVIIKPSPENS-----QELYLESL-EYLGINLK-------------------------EHDIRFVE-- 124 (298)
T ss_dssp CTTC-CSEEEEEEEEEESCCSSH-----HHHHHHHH-HHTTCCTT-------------------------TSCEEEEE--
T ss_pred Cchh-hhhheeeEEEECCCCccH-----HHHHHHHH-HHhCCCcc-------------------------cCCceeec--
Confidence 2222 345555555444444431 11111111 23455543 34455542
Q ss_pred CCCCCCCCCcccCCCCCCCCCceeEEEecCCCCCCCCCCCCCCCCCceeEEeeeccccccccCCCCCCCcccccCCCCcc
Q psy13352 158 NSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCV 237 (451)
Q Consensus 158 ~~~~~~~dNfW~~G~~GPCGPcsEI~yd~g~~~~~~~~~~~~~~~~r~lEIwNlVFmqy~r~~d~~~G~~~l~~Lp~k~I 237 (451)
|| |+-=.-|.-|===|+.-| | +||=-. +=|.+ .. | .++..-.+
T Consensus 125 -------Dn-WEsPTLGAwGLGWEVWld-------G------------MEITQF--TYFQQ-vG---G----i~c~pv~~ 167 (298)
T 1j5w_A 125 -------DN-WESPTLGAWGVGWEVWLD-------G------------MEITQF--TYFQQ-IG---G----ISLKDIPL 167 (298)
T ss_dssp -------EC-CEEGGGTEEEEEEEEEET-------T------------EEEEEE--EEEEE-BT---T----BCCSSCCE
T ss_pred -------cC-CCCCccccccccceeeEc-------c------------eeeehh--hhhhh-cC---C----cccCccce
Confidence 55 542222555655666653 2 777543 33333 33 3 33444566
Q ss_pred ccCchHHHHHHHHhcCCCccch
Q psy13352 238 DTGMGLERLASILQNVYNNYET 259 (451)
Q Consensus 238 DTGmGLERl~~vlQg~~snYdt 259 (451)
.-=+||||||+.|||+.|+||.
T Consensus 168 EITYGLERiamylQ~vd~vydl 189 (298)
T 1j5w_A 168 EITYGLERIAMYLQGVDNVYEV 189 (298)
T ss_dssp EEEEEHHHHHHHHHTCSSGGGC
T ss_pred eecccHHHHHHHHhCCCceecc
Confidence 7789999999999999999997
No 7
>1nnh_A Asparaginyl-tRNA synthetase-related peptide; structural genomics, PSI, protein structure initiative, southeast COLL for structural genomics; 1.65A {Pyrococcus furiosus} SCOP: d.104.1.1 PDB: 3p8t_A 3p8v_A 3p8y_A 3reu_A* 3rex_A* 3rl6_A*
Probab=95.10 E-value=0.04 Score=54.16 Aligned_cols=104 Identities=13% Similarity=0.116 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccc-----cccccc----cccccCCCC---------CCCCCCccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTN-----SGMVQF----KDVFLGIEK---------RNYLRATSIQR 65 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtn-----AGM~qF----kp~flG~~~---------p~~~r~~~~Qk 65 (451)
+.|.+.+-+||.++|...|..--+.+.+| ++-.. |=|.++ ++++|-+++ .+..|+-..-+
T Consensus 19 s~i~~~ir~~f~~~GF~EVeTP~l~~~~~--~~~~~~~~e~a~~f~~~~~~~~~~L~~Spe~~~~~l~~~g~~rvf~ig~ 96 (294)
T 1nnh_A 19 TKILEYMTDFFVKEGFKWLLPVIISPITD--PLWPDPAGEGMEPAEVEIYGVKMRLTHSMILHKQLAIAMGLKKIFVLSP 96 (294)
T ss_dssp HHHHHHHHHHHHHTTCEEECCCCEESCCC--CCCSCTTCCCCCCCEEEETTEEEEECSCSHHHHHHHHHTTCCEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEccc--hhccCCCCCcceeEEEEcCCCCEEeccChHHHHHHHhhcCccceEEEEc
Confidence 46778888999999999887544444311 11100 112111 123332211 12467888899
Q ss_pred ccccCCCCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHhhhhc
Q psy13352 66 CLRAGGKHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLTQIY 117 (451)
Q Consensus 66 CiR~gGkhnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT~~l 117 (451)
|.|. +=++. .|+||..=|.|++-. ++.|| +|.+..+.+++...+
T Consensus 97 ~FR~-----E~pq~-~~~RH~~EFtqle~e~~~~~~--~~l~~~~e~l~~~l~ 141 (294)
T 1nnh_A 97 NIRL-----ESRQK-DDGRHAYEFTQLDFEVERAKM--EDIMRLIERLVYGLF 141 (294)
T ss_dssp EECC-----CCGGG-CSSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHH
T ss_pred cEeC-----CCCCC-CCCccccceeEEEEEecCCCH--HHHHHHHHHHHHHHH
Confidence 9996 32112 257999888888754 44464 688888888876553
No 8
>1wyd_A Hypothetical aspartyl-tRNA synthetase; archaea, LIGA; HET: EPE; 2.30A {Sulfolobus tokodaii}
Probab=92.99 E-value=0.29 Score=50.71 Aligned_cols=98 Identities=19% Similarity=0.286 Sum_probs=56.8
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCC-CC--Cccccccccccc-cccccCCCCC--------CCCCCcccccccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDN-DS--SLLFTNSGMVQF-KDVFLGIEKR--------NYLRATSIQRCLRAGG 71 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~-dp--tllFtnAGM~qF-kp~flG~~~p--------~~~r~~~~QkCiR~gG 71 (451)
++|.+.+-+||.++|...|..--|.+.. .+ .++-|+. | ++++|-+++. ...|+-...+|.|.
T Consensus 138 s~i~~~ir~ff~~~gF~eV~TP~l~~~~~e~~~~~f~~~~----~~~~~~L~~Spql~~~~~~~g~~rvf~ig~~FR~-- 211 (429)
T 1wyd_A 138 SLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVIY----FGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRA-- 211 (429)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCSSTTCCCCEEEE----TTEEEEECSCCHHHHHHHHHHHSEEEEEEEEECC--
T ss_pred HHHHHHHHHHHhhCCCEEEECCEEEeeCCCCCceeEEEec----CCceEEecCCcHHHHHHHHhCcCceEEEcccccc--
Confidence 4677888899999999888664444321 11 1122211 1 2334422211 12567778899997
Q ss_pred CCCCCCCCCCCCCchhhhhhhcc-ccccccchHHHHHHHHHHhhh
Q psy13352 72 KHNDLENVGYTNYHHTFFQMLGN-WSFGDYFKYESLQWTWELLTQ 115 (451)
Q Consensus 72 khnDldnVG~t~rHhTfFEMLGN-fSFGdYfK~eaI~~awe~LT~ 115 (451)
-+.+ ++||..=|-|+.- .+|.|| +|.+..+.+++..
T Consensus 212 --E~~~----~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 248 (429)
T 1wyd_A 212 --EESD----TPFHLAEFISMDVEMAFADY--NDVMQLLEKILHN 248 (429)
T ss_dssp --CCCC----SSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred --cCCc----cccccceeeEeeeeecCCCH--HHHHHHHHHHHHH
Confidence 3332 6799988888764 344565 5566666655443
No 9
>1x54_A Asparaginyl-tRNA synthetase; aminoacyl-tRNA synthetase, riken structural genomics/proteom initiative, RSGI, structural genomics, ligase; HET: 4AD; 1.45A {Pyrococcus horikoshii} PDB: 1x55_A* 1x56_A
Probab=90.45 E-value=0.43 Score=49.51 Aligned_cols=98 Identities=18% Similarity=0.169 Sum_probs=57.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccC-CCC--Cccccccccccc-cccccCCCC--------CCCCCCcccccccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPD-NDS--SLLFTNSGMVQF-KDVFLGIEK--------RNYLRATSIQRCLRAGG 71 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~-~dp--tllFtnAGM~qF-kp~flG~~~--------p~~~r~~~~QkCiR~gG 71 (451)
+.|-+.+-+||.++|...|..--|.+. ..+ .++=|+. | ++++|-+++ ....|+-..-+|.|.
T Consensus 139 s~i~~~ir~~f~~~gF~eVeTP~l~~~~~e~~~~~f~~~~----~~~~~~Lr~Spel~~~~~~~g~~rvf~ig~~FR~-- 212 (434)
T 1x54_A 139 ETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKY----FDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRA-- 212 (434)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCSSCGGGCCEEEE----TTEEEEECSCSHHHHHHHHHHHSEEEEEEEEECC--
T ss_pred HHHHHHHHHHHHHCCCEEEeCcEEEeecCCCCceeEEEee----cCCcEEeccChHHHHHHHhcCccceEEEecceec--
Confidence 457778889999999998876554432 111 1111111 0 123333221 113577788999997
Q ss_pred CCCCCCCCCCCCCchhhhhhhccc-cccccchHHHHHHHHHHhhh
Q psy13352 72 KHNDLENVGYTNYHHTFFQMLGNW-SFGDYFKYESLQWTWELLTQ 115 (451)
Q Consensus 72 khnDldnVG~t~rHhTfFEMLGNf-SFGdYfK~eaI~~awe~LT~ 115 (451)
-+.+ ++||..=|-|+.-. +|.|| +|.+..+.+++..
T Consensus 213 --E~~~----~~RH~pEFtqle~e~~~~~~--~dlm~~~e~ll~~ 249 (434)
T 1x54_A 213 --EKSR----TRRHLTEFWHLELEAAWMDL--WDIMKVEEELVSY 249 (434)
T ss_dssp --CCCC----CSSCCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred --CCCC----CcccccEEEEeeEEEcCCCH--HHHHHHHHHHHHH
Confidence 3332 67999788887643 44565 6677766666543
No 10
>4dh4_A MIF; trimer, isomerase; 1.82A {Toxoplasma gondii}
Probab=78.23 E-value=1.3 Score=36.86 Aligned_cols=30 Identities=10% Similarity=0.012 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-++|.++||+||+|+||.+++
T Consensus 72 ~~~~l~~~i~~~l~~~Lgi~~~riyI~f~d 101 (114)
T 4dh4_A 72 TNCKIAAALSAACERHLGVPKNRIYTTFTN 101 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEe
Confidence 567778888899999999999999999875
No 11
>3djh_A Macrophage migration inhibitory factor; homotrimer, cytokine, inflammatory response, isomerase, phosphoprotein; 1.25A {Homo sapiens} SCOP: d.80.1.3 PDB: 1ca7_A* 1ljt_A* 2ooh_A* 2ooz_A* 3b9s_A* 2oow_A* 3ce4_A 3dji_A* 3ijg_A* 3ijj_A* 3smb_A* 3smc_A* 3u18_A* 4f2k_A* 1gd0_A* 1gcz_A* 3jsf_A* 3jsg_A* 3jtu_A* 3l5p_A* ...
Probab=75.42 E-value=2.1 Score=35.71 Aligned_cols=30 Identities=20% Similarity=0.227 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-.+---++|.+.||+|++|+||.++.
T Consensus 71 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 100 (114)
T 3djh_A 71 QNRSYSKLLCGLLAERLRISPDRVYINYYD 100 (114)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 456666677788999999999999999876
No 12
>2xcz_A Possible ATLS1-like light-inducible protein; cytokine, tautomerase, immune system, cyanobacterium; 1.64A {Prochlorococcus marinus}
Probab=75.12 E-value=2.2 Score=35.34 Aligned_cols=30 Identities=17% Similarity=0.173 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 2xcz_A 72 RTQEVSELVCGHIEQNLGIPADRIYIGFED 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 477888888899999999999999999876
No 13
>1hfo_A Migration inhibitory factor; tautomerase; 1.65A {Trichinella spiralis} SCOP: d.80.1.3
Probab=75.12 E-value=2.2 Score=35.14 Aligned_cols=30 Identities=13% Similarity=0.203 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-++|.+.||++|+++||++.+
T Consensus 71 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 100 (113)
T 1hfo_A 71 RNRDHSAKLFDHLNTKLGIPKNRMYIHFVN 100 (113)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 477778888899999999999999999876
No 14
>3b64_A Macrophage migration inhibitory factor-like protein; cytokine, MIF, LM1740MIF, lmmif, unknown function; 1.03A {Leishmania major}
Probab=74.77 E-value=2.3 Score=35.07 Aligned_cols=32 Identities=9% Similarity=0.125 Sum_probs=27.6
Q ss_pred ccchHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 99 DYFKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 99 dYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
.=-|++-++-.-++|.+.||++|+++||++.+
T Consensus 70 ~eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (112)
T 3b64_A 70 PSEPEKVTSIVTAAITKECGIVADRIFVLYFS 101 (112)
T ss_dssp TTHHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 34577888888899999999999999999876
No 15
>2wkb_A Macrophage migration inhibitory factor; cytokine; HET: CME; 1.78A {Plasmodium berghei} PDB: 3gad_A 3gac_A 2wkf_A*
Probab=74.01 E-value=2.4 Score=35.85 Aligned_cols=31 Identities=10% Similarity=-0.017 Sum_probs=27.6
Q ss_pred cchHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 100 YFKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 100 YfK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
=-|++-++-.-++|.+.||+||+++||++.+
T Consensus 71 eqk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (125)
T 2wkb_A 71 SNNSLLADKITKILSNHLSVKPRRVYIEFRD 101 (125)
T ss_dssp CTHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 3578888888999999999999999999876
No 16
>3fwu_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.80A {Leishmania major}
Probab=73.95 E-value=2.4 Score=36.79 Aligned_cols=99 Identities=15% Similarity=0.189 Sum_probs=45.8
Q ss_pred CeeecCCCCccCCCCCc---cccccccccccc-cccCC---------CCCCCCCCcc---cccccccCCCCCCCCCCCCC
Q psy13352 19 HTIVPSSSLIPDNDSSL---LFTNSGMVQFKD-VFLGI---------EKRNYLRATS---IQRCLRAGGKHNDLENVGYT 82 (451)
Q Consensus 19 H~~vps~slvp~~dptl---lFtnAGM~qFkp-~flG~---------~~p~~~r~~~---~QkCiR~gGkhnDldnVG~t 82 (451)
|..-.|+-|||+.++-= +-||.+..+-+. -|+-. .+|+. .+.. ...|+.+||.-.+
T Consensus 6 ~~~~~~~~~~~~~~~MP~i~i~tnv~~s~~~~~~l~~~ls~~la~~lgKPe~-~vmV~~~~~~~m~fgGs~dP------- 77 (133)
T 3fwu_A 6 HHHHHSSGLVPRGSHMPVIQTFVSTPLDHHKRENLAQVYRAVTRDVLGKPED-LVMMTFHDSTPMHFFGSTDP------- 77 (133)
T ss_dssp ---------------CCEEEEEESSCCCHHHHHHHHHHHHHHHHHTSCSCGG-GCEEEEECSCCCCBTTBCSS-------
T ss_pred cccccccCCCCCCCCCCEEEEEeCCCCCHHHHHHHHHHHHHHHHHHHCcCcc-EEEEEEECCceEEECCcCCC-------
Confidence 44557888999766533 336666644433 12210 12222 2211 2347777775311
Q ss_pred CCchhhhhh--hccccccccchHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 83 NYHHTFFQM--LGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 83 ~rHhTfFEM--LGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
..+.|. +|. .+.=-|++-.+-.-++|.+.||||++|+||.++.
T Consensus 78 ---~a~v~i~sig~--~~~e~n~~~s~~i~~~l~~~LgI~~~riyI~f~d 122 (133)
T 3fwu_A 78 ---VACVRVEALGG--YGPSEPEKVTSIVTAAITKECGIVADRIFVLYFS 122 (133)
T ss_dssp ---CEEEEEECTTC--CCTTHHHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred ---EEEEEEEEcCC--CCHHHHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 112222 333 3333566667777889999999999999999765
No 17
>1uiz_A MIF, macrophage migration inhibitory factor; cytokine, tautomerase; 2.50A {Xenopus laevis} SCOP: d.80.1.3
Probab=73.57 E-value=2.5 Score=34.96 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=26.4
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (115)
T 1uiz_A 72 QNKSYTKLLCDILTKQLNIPANRVYINYYD 101 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 477778888889999999999999999876
No 18
>2os5_A Acemif; macrophage migration inhibitory factor, cytokine, nematode,; 1.60A {Ancylostoma ceylanicum} PDB: 3rf4_A* 3rf5_A*
Probab=72.98 E-value=2.6 Score=35.19 Aligned_cols=30 Identities=13% Similarity=0.062 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-++|.+.||+||+++||++.+
T Consensus 72 qk~~l~~~i~~~l~~~lgi~~~~v~I~~~e 101 (119)
T 2os5_A 72 DNIRHTQKITQFCQDTLKLPKDKVIITYFD 101 (119)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 477778888899999999999999999876
No 19
>3kan_A D-dopachrome tautomerase; immune response, cytokine, cytokine-inhibitor C; HET: RW1; 1.13A {Homo sapiens} SCOP: d.80.1.3 PDB: 1dpt_A* 3ker_A*
Probab=71.16 E-value=3 Score=35.18 Aligned_cols=29 Identities=21% Similarity=0.313 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 102 KYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 102 K~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
+++-.+---++|.+.||+|++|+||.++.
T Consensus 73 n~~~s~~i~~~l~~~Lgi~~~RiyI~f~d 101 (117)
T 3kan_A 73 NRSHSAHFFEFLTKELALGQDRILIRFFP 101 (117)
T ss_dssp HHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 45555666788999999999999999775
No 20
>3t5s_A Gilaa.00834.A, macrophage migration inhibitory factor; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Giardia lamblia}
Probab=70.81 E-value=2.8 Score=36.47 Aligned_cols=30 Identities=20% Similarity=0.075 Sum_probs=25.4
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-.+-.-++|.+.||+||+|+||.++.
T Consensus 93 ~n~~~s~~i~~~l~~~Lgi~~~riyI~f~d 122 (135)
T 3t5s_A 93 KNPSISAAITGCLTQHFKVKPERVYISFNE 122 (135)
T ss_dssp CCHHHHHHHHHHHHHHHCCCGGGEEEEEEC
T ss_pred CCchHHHHHHHHHHHhcccCccEEEEEecc
Confidence 456666777789999999999999999876
No 21
>3fwt_A Macrophage migration inhibitory factor-like protein; homotrimer, tautomerase, cytokine; 1.90A {Leishmania major}
Probab=70.07 E-value=2.9 Score=36.19 Aligned_cols=30 Identities=17% Similarity=0.176 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-.+-.-++|.+.|||||+|+||.++.
T Consensus 93 ~n~~~s~~i~~~l~~~LgI~~~rvyI~f~d 122 (133)
T 3fwt_A 93 KPKMMTPRIAAAITKECGIPAERIYVFYYS 122 (133)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 466666777788999999999999999765
No 22
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=66.36 E-value=7.3 Score=40.86 Aligned_cols=95 Identities=25% Similarity=0.370 Sum_probs=59.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc------cccccCCCC---------CCCCCCcccccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF------KDVFLGIEK---------RNYLRATSIQRCLR 68 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF------kp~flG~~~---------p~~~r~~~~QkCiR 68 (451)
+.|-+.+-+||.++|...|..--|.+.. +.+|-..| ++++|-+++ ....|+=...+|.|
T Consensus 182 s~i~~~ir~~~~~~gF~EV~TPil~~~~------~~~ga~~f~~~~~~~~~~L~~Spql~~k~l~~~g~~rvy~ig~~FR 255 (487)
T 1eov_A 182 AGVCELFREYLATKKFTEVHTPKLLGAP------SEGGSSVFEVTYFKGKAYLAQSPQFNKQQLIVADFERVYEIGPVFR 255 (487)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSC------SSSSSCCCEEEETTEEEEECSCTHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred HHHHHHHHHHHHhCCcEEEeCCEEEEec------CCCCcccceeccCCccEEcccChHHHHHHHHhcCCCceEEEeccEe
Confidence 3566777899999999888765444421 11111122 234443322 12457777889999
Q ss_pred cCCCCCCCCCCCCCCCchhhhhhhcc-cccc-ccchHHHHHHHHHHhh
Q psy13352 69 AGGKHNDLENVGYTNYHHTFFQMLGN-WSFG-DYFKYESLQWTWELLT 114 (451)
Q Consensus 69 ~gGkhnDldnVG~t~rHhTfFEMLGN-fSFG-dYfK~eaI~~awe~LT 114 (451)
. -+ . .|+||..=|-|+.- .||| || +|.++.+-+++.
T Consensus 256 ~----E~---~-~~~Rh~pEFt~le~e~af~~~~--~dlm~l~E~ll~ 293 (487)
T 1eov_A 256 A----EN---S-NTHRHMTEFTGLDMEMAFEEHY--HEVLDTLSELFV 293 (487)
T ss_dssp C----CC---C-CCTTCCSEEEEEEEEEECSSCT--HHHHHHHHHHHH
T ss_pred c----CC---C-CCCccchhhhhhhhhhhhhcCH--HHHHHHHHHHHH
Confidence 7 33 2 27899988999997 6898 57 566666555544
No 23
>1otf_A 4-oxalocrotonate tautomerase; isomerase; 1.90A {Pseudomonas SP} SCOP: d.80.1.1 PDB: 4otc_A 4ota_A 4otb_A 1bjp_A 2fm7_A
Probab=66.11 E-value=3.9 Score=29.59 Aligned_cols=30 Identities=13% Similarity=0.109 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-..+.|.+.||+|++++||.+.+
T Consensus 15 ~k~~l~~~i~~~l~~~lg~p~~~v~v~i~e 44 (62)
T 1otf_A 15 QKETLIRQVSEAMANSLDAPLERVRVLITE 44 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 466677777888999999999999999765
No 24
>2opa_A Probable tautomerase YWHB; homohexamer, 4-oxalocrotonate tautomerase, inhibitor, 2-FLUO hydroxycinnamate, isomerase; HET: FHC; 2.40A {Bacillus subtilis} PDB: 2op8_A*
Probab=65.36 E-value=4.2 Score=29.40 Aligned_cols=30 Identities=17% Similarity=0.087 Sum_probs=25.2
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.|.+.||+|++++||.+.+
T Consensus 15 qk~~l~~~i~~~l~~~lg~~~~~v~V~i~e 44 (61)
T 2opa_A 15 QKRNLVEKVTEAVKETTGASEEKIVVFIEE 44 (61)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCeEEEEEEE
Confidence 466667777888889999999999999875
No 25
>3abf_A 4-oxalocrotonate tautomerase; isomerase; 1.94A {Thermus thermophilus}
Probab=64.59 E-value=4.9 Score=29.31 Aligned_cols=29 Identities=21% Similarity=0.322 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 102 KYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 102 K~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
|++-++-.-+.|.+.+|+|+++++|.+.+
T Consensus 17 k~~l~~~lt~~l~~~lg~~~~~v~V~i~e 45 (64)
T 3abf_A 17 KRELVRRLTEMASRLLGEPYEEVRVILYE 45 (64)
T ss_dssp HHHHHHHHHHHHHHHTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 55667777788888999999999999765
No 26
>1gyx_A YDCE, B1461, hypothetical protein YDCE; tautomerase, isomerase, complete proteo; HET: EPE; 1.35A {Escherichia coli} SCOP: d.80.1.1 PDB: 1gyj_A* 1gyy_A*
Probab=62.72 E-value=11 Score=28.94 Aligned_cols=40 Identities=13% Similarity=0.064 Sum_probs=30.4
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeCCcHH--HHHHHHh
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYITDDE--TYNIWTN 141 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~E--a~~iW~~ 141 (451)
-|++-++-.-+.|.+.||+|+++++|.+.+-+.+ +. +|..
T Consensus 16 qk~~L~~~l~~~l~~~lgip~~~v~V~i~e~~~~~w~~-v~~~ 57 (76)
T 1gyx_A 16 QKAALAADITDVIIRHLNSKDSSISIALQQIQPESWQA-IWDA 57 (76)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGCEEEEEECCGGGHHH-HHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCceEEEEEEEeChHHEEE-EEch
Confidence 4666677777888899999999999999875443 45 5544
No 27
>3m20_A 4-oxalocrotonate tautomerase, putative; DMPI, thermophIle, beta-alpha-beta, catalytic proline, isomerase; 2.37A {Archaeoglobus fulgidus}
Probab=56.33 E-value=13 Score=27.46 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=24.9
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.+.+.+|+|++.++|.+.+
T Consensus 14 qK~~L~~~it~~~~~~lg~~~~~v~V~i~E 43 (62)
T 3m20_A 14 KKREFVERLTSVAAEIYGMDRSAITILIHE 43 (62)
T ss_dssp HHHHHHHHHHHHHHHHHTCCTTSCEEEEEC
T ss_pred HHHHHHHHHHHHHHHHhCcCcceEEEEEEE
Confidence 366667777788888999999999999876
No 28
>2aal_A Malonate semialdehyde decarboxylase; tautomerase superfamily, beta-alpha-beta, homotrimeric, LYAS; 1.65A {Pseudomonas pavonaceae} SCOP: d.80.1.6 PDB: 2aag_A 2aaj_A
Probab=53.70 E-value=9.8 Score=32.15 Aligned_cols=30 Identities=13% Similarity=0.024 Sum_probs=26.6
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.|.+.||++++++||++.+
T Consensus 80 qK~~l~~~l~~~l~~~lg~~~~~v~I~i~e 109 (131)
T 2aal_A 80 QKVCFYKLLTGALERDCGISPDDVIVALVE 109 (131)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 377888888899999999999999999876
No 29
>1mww_A Hypothetical protein HI1388.1; structural genomics, structure 2 function project, S2F, unknown function; HET: GLU; 2.08A {Haemophilus influenzae} SCOP: d.80.1.4
Probab=52.47 E-value=8.8 Score=32.25 Aligned_cols=30 Identities=17% Similarity=0.125 Sum_probs=26.0
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.|.+.||+|++++||++.+
T Consensus 74 qK~~l~~~l~~~l~~~lg~~~~~v~V~i~e 103 (128)
T 1mww_A 74 TKKRLIKMLFSELEYKLGIRAHDVEITIKE 103 (128)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcChhhEEEEEEE
Confidence 577778888888999999999999999875
No 30
>2x4k_A 4-oxalocrotonate tautomerase; isomerase; 1.10A {Staphylococcus aureus}
Probab=51.09 E-value=10 Score=27.05 Aligned_cols=29 Identities=3% Similarity=-0.011 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 102 KYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 102 K~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
|++-++-.-+.|.+.||+|+++++|.+.+
T Consensus 19 k~~l~~~l~~~l~~~lg~p~~~v~v~i~e 47 (63)
T 2x4k_A 19 LKNLVSEVTDAVEKTTGANRQAIHVVIEE 47 (63)
T ss_dssp HHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 55566677778888999999999998765
No 31
>3n4h_A Putative tautomerase; CG10062, CIS-3-chloroacrylic acid dehalogenase, tautomerase superfamily, beta-alpha-beta motif, hydrolase; HET: PR7; 2.02A {Corynebacterium glutamicum} PDB: 3n4d_A* 3n4g_A
Probab=50.04 E-value=11 Score=32.69 Aligned_cols=30 Identities=23% Similarity=0.299 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-..+.|.+.+|+|++++||++.+
T Consensus 77 qk~~l~~~l~~~l~~~lgi~~~~v~V~i~E 106 (148)
T 3n4h_A 77 QKEELLLRLTQEIALILGIPNEEVWVYITE 106 (148)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcCcEEEEEEE
Confidence 477788888899999999999999999985
No 32
>3mb2_A 4-oxalocrotonate tautomerase family enzyme - ALPH; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, hydrolase; 2.41A {Chloroflexus aurantiacus}
Probab=49.36 E-value=12 Score=28.47 Aligned_cols=30 Identities=7% Similarity=0.013 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.+.+.+|+|++.++|.+.+
T Consensus 16 qK~~L~~~it~~l~~~lg~p~~~v~V~i~e 45 (72)
T 3mb2_A 16 QKAELARALSAAAAAAFDVPLAEVRLIIQE 45 (72)
T ss_dssp HHHHHHHHHHHHHHHHHTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCCcccEEEEEEE
Confidence 366777777888888999999999999765
No 33
>3m21_A Probable tautomerase HP_0924; 4-oxalocrotonate tautomerase, catalytic proline, hexamer, BE beta, isomerase; 1.90A {Helicobacter pylori} PDB: 2orm_A
Probab=48.52 E-value=12 Score=27.83 Aligned_cols=30 Identities=7% Similarity=0.080 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-..+.|.+.||+|++.++|.+.+
T Consensus 18 qK~~l~~~lt~~l~~~lg~p~~~v~V~i~e 47 (67)
T 3m21_A 18 QKQQLIEGVSDLMVKVLNKNKASIVVIIDE 47 (67)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 366677777888888999999999999765
No 34
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=48.12 E-value=60 Score=25.34 Aligned_cols=50 Identities=16% Similarity=0.213 Sum_probs=39.4
Q ss_pred CCCCCChHHHHHHHhcCCCCHHhHHHHHHHcCC----ccCHhhHHHHHHHHHHH
Q psy13352 387 KPDKLDGKLAFILYDTYGFPIDLTIDICKEHNV----SFNKNDFILEMEKQRNN 436 (451)
Q Consensus 387 ~~~~l~g~~af~LydtyGfP~dlt~eia~e~gi----~vd~~~f~~~~~~qr~~ 436 (451)
+.+.|+.+++-.++.+.|+|-+-+.++.++... .||.++|..+|.....+
T Consensus 23 ~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~~~ 76 (95)
T 1c07_A 23 MDGFVSGLEVREIFLKTGLPSTLLAHIWSLCDTKDCGKLSKDQFALAFHLISQK 76 (95)
T ss_dssp CSSEECHHHHHHHHHTTTCCHHHHHHHHHHHCTTCSSSEETTTHHHHHHHHHHH
T ss_pred CCCcEeHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHHHHH
Confidence 456899999999999999999888888776543 37778899998655443
No 35
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=45.11 E-value=56 Score=26.66 Aligned_cols=46 Identities=13% Similarity=0.218 Sum_probs=38.4
Q ss_pred CCCCChHHHHHHHhcCCCCHHhHHHHHHHcCC----ccCHhhHHHHHHHH
Q psy13352 388 PDKLDGKLAFILYDTYGFPIDLTIDICKEHNV----SFNKNDFILEMEKQ 433 (451)
Q Consensus 388 ~~~l~g~~af~LydtyGfP~dlt~eia~e~gi----~vd~~~f~~~~~~q 433 (451)
.+.|+++++-.++-+.|+|-+.+.+|.++... .+|.++|..+|..-
T Consensus 28 dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~id~~EF~~~m~~~ 77 (106)
T 1eh2_A 28 NGFLSGDKVKPVLLNSKLPVDILGRVWELSDIDHDGMLDRDEFAVAMFLV 77 (106)
T ss_dssp SSCCBHHHHHHHHHTTTCCHHHHHHHHHHHCSSCSSBCCHHHHHHHHHHH
T ss_pred CCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 46899999999999999999988888877654 37888999998654
No 36
>1qjt_A EH1, epidermal growth factor receptor substrate substrate 15, EPS15; EH domain, EF-hand, solution structure, S100 protein; NMR {Mus musculus} SCOP: a.39.1.6
Probab=44.91 E-value=81 Score=25.02 Aligned_cols=47 Identities=13% Similarity=0.157 Sum_probs=38.3
Q ss_pred CCCCCChHHHHHHHhcCCCCHHhHHHHHHHcCC----ccCHhhHHHHHHHH
Q psy13352 387 KPDKLDGKLAFILYDTYGFPIDLTIDICKEHNV----SFNKNDFILEMEKQ 433 (451)
Q Consensus 387 ~~~~l~g~~af~LydtyGfP~dlt~eia~e~gi----~vd~~~f~~~~~~q 433 (451)
+.+.|+.+++-.+..+.|+|-+.+.+|.++... .||.++|..+|...
T Consensus 24 ~dG~Is~~el~~~l~~~~l~~~~l~~i~~~~D~d~dG~i~~~EF~~~~~~~ 74 (99)
T 1qjt_A 24 NTGRVLALDAAAFLKKSGLPDLILGKIWDLADTDGKGVLSKQEFFVALRLV 74 (99)
T ss_dssp TSSCCCSHHHHHHHHTSSSCHHHHHHHHHHHCCSSSSSCCSHHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHH
Confidence 456899999999999999999988888887543 37788999998543
No 37
>3ry0_A Putative tautomerase; oxalocrotonate tautomerase family, isomerase; 1.40A {Streptomyces achromogenes}
Probab=42.80 E-value=16 Score=26.96 Aligned_cols=30 Identities=10% Similarity=-0.109 Sum_probs=25.0
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.+.+.||+|++.++|.+.+
T Consensus 15 qk~~L~~~it~~~~~~lg~p~~~v~V~i~e 44 (65)
T 3ry0_A 15 EVAALGEALTAAAHETLGTPVEAVRVIVEE 44 (65)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCcCcccEEEEEEE
Confidence 366677777788888999999999999765
No 38
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=42.67 E-value=30 Score=37.04 Aligned_cols=83 Identities=22% Similarity=0.320 Sum_probs=49.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc------cccccCCCC---------CCCCCCcccccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF------KDVFLGIEK---------RNYLRATSIQRCLR 68 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF------kp~flG~~~---------p~~~r~~~~QkCiR 68 (451)
++|-+.+-+||.++|..-|..--|.+. .+ .+|-..| ++++|-+++ ....|+-..-+|.|
T Consensus 248 s~i~~~iR~ff~~~gF~EVeTPiL~~~-~~-----egga~~F~v~~~~~~~yL~~Spql~~k~ll~~g~~rVfeI~~~FR 321 (548)
T 3i7f_A 248 SACCGLFREFLTSQKFVEIHTPKLIGC-SS-----EGGSNIFEVKYFDRKAYLAQSPQLYKQMAIMGDFRKVFEVGPVFR 321 (548)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSBC-------------------------CCBCSCTHHHHHHHHTTTCCEEEEEEEECC
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEecc-cC-----CCCcceeEEecCCCceEeccCHHHHHHHHHhcCcCcEEEEeeeEe
Confidence 456677789999999988876555542 11 1233333 233443332 12456666789999
Q ss_pred cCCCCCCCCCCCCCCCchhhhhhhccc-ccc-cc
Q psy13352 69 AGGKHNDLENVGYTNYHHTFFQMLGNW-SFG-DY 100 (451)
Q Consensus 69 ~gGkhnDldnVG~t~rHhTfFEMLGNf-SFG-dY 100 (451)
. -+. .|.||.+=|-||--. +|+ ||
T Consensus 322 ~----E~~----~t~RHl~EFtmlE~e~af~~d~ 347 (548)
T 3i7f_A 322 A----ENS----NTRRHLTEFEGLDIEMEIVENY 347 (548)
T ss_dssp C----SCC----CSSSCCSCEEEEEEEEECSSCT
T ss_pred c----CCC----CCCCcchhhhchhhhhhhhcCH
Confidence 7 332 278999999998765 787 56
No 39
>3ej9_A Alpha-subunit of trans-3-chloroacrylic acid dehal; trans-3-chloroacrylic acid dehalogenase, CAAD, dehalogenase, isomerase, hydrolase; 1.50A {Pseudomonas pavonaceae} SCOP: d.80.1.1 PDB: 3ej3_A 1s0y_A 3ej7_A
Probab=40.32 E-value=18 Score=27.97 Aligned_cols=30 Identities=10% Similarity=0.065 Sum_probs=24.8
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.+.+.+|+|++.++|.+.+
T Consensus 16 qK~~L~~~it~~l~~~lg~p~~~v~V~i~E 45 (76)
T 3ej9_A 16 QKRALSAGLLRVISEATGEPRENIFFVIRE 45 (76)
T ss_dssp HHHHHHHHHHHHHHHHHCCCGGGCEEEEEE
T ss_pred HHHHHHHHHHHHHHHHHCcCcccEEEEEEE
Confidence 466667777788888899999999999765
No 40
>3a5y_A GENX, putative lysyl-tRNA synthetase; aminoacyl-tRNA synthetase paralog, translation, lysyl- synthetase, lysyladenylate analog; HET: KAA; 1.90A {Escherichia coli} PDB: 3a5z_A* 3g1z_A*
Probab=39.46 E-value=10 Score=38.02 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=62.8
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccccccc------------ccccCCCC---------CCCCCCcc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFK------------DVFLGIEK---------RNYLRATS 62 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qFk------------p~flG~~~---------p~~~r~~~ 62 (451)
++|-+.+-+||.++|..-|..--|.+.... .|+..+|+ +.+|-+++ ....|+=.
T Consensus 40 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~~-----~a~~~~F~~~~~~~~~~~~~~~yL~~Spql~~k~l~~~g~~rvyq 114 (345)
T 3a5y_A 40 AAIMAEIRRFFADRGVLEVETPCMSQATVT-----DIHLVPFETRFVGPGHSQGMNLWLMTSPEYHMKRLLVAGCGPVFQ 114 (345)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCC-----CTTCCCCEEEECCSTTSCCEEEEECSCSHHHHHHHHHTTCCSEEE
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEecCCC-----CCccceEEEEecCcccccCCCEeecCCHHHHHHHHHHcCCCcEEE
Confidence 356677888999999988876544442211 12223333 23332221 12467778
Q ss_pred cccccccCCCCCCCCCCCCCCCchhhhhhhc-cccccccchHHHHHHHHHHhhhhcCC
Q psy13352 63 IQRCLRAGGKHNDLENVGYTNYHHTFFQMLG-NWSFGDYFKYESLQWTWELLTQIYGL 119 (451)
Q Consensus 63 ~QkCiR~gGkhnDldnVG~t~rHhTfFEMLG-NfSFGdYfK~eaI~~awe~LT~~lgl 119 (451)
.-||.|. -| . |.||..=|-||= -.+|.|| ++.++.+=+++..+++.
T Consensus 115 Ig~~FR~----E~---~--~~rH~pEFt~lE~e~af~d~--~d~m~~~E~li~~v~~~ 161 (345)
T 3a5y_A 115 LCRSFRN----EE---M--GRYHNPEFTMLEWYRPHYDM--YRLMNEVDDLLQQVLDC 161 (345)
T ss_dssp EEEEECC----CC---C--BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHHHHCC
T ss_pred EEcceeC----CC---C--cccccchhheeeeeeeCCCH--HHHHHHHHHHHHHHHcC
Confidence 8899997 33 3 799999999985 3366676 66777777777666654
No 41
>1fi6_A EH domain protein REPS1; EPS15 homology domain, EF hand, calcium, RAS signal transduction, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: a.39.1.6
Probab=35.81 E-value=73 Score=24.58 Aligned_cols=48 Identities=13% Similarity=0.121 Sum_probs=37.8
Q ss_pred CCCCCChHHHHHHHhcCCCCHHhHHHHHHHcCC----ccCHhhHHHHHHHHH
Q psy13352 387 KPDKLDGKLAFILYDTYGFPIDLTIDICKEHNV----SFNKNDFILEMEKQR 434 (451)
Q Consensus 387 ~~~~l~g~~af~LydtyGfP~dlt~eia~e~gi----~vd~~~f~~~~~~qr 434 (451)
+.+.|+.+++-.+..+.|+|.+-+.++.++... .||.++|..+|....
T Consensus 22 ~dG~I~~~el~~~l~~~g~~~~~~~~i~~~~D~d~dG~i~~~EF~~~~~~~~ 73 (92)
T 1fi6_A 22 LNGFIPGSAAKEFFTKSKLPILELSHIWELSDFDKDGALTLDEFCAAFHLVV 73 (92)
T ss_dssp TTCEEEHHHHHHHHHHHSSCHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHHH
T ss_pred CCCcCcHHHHHHHHHHcCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
Confidence 356899999999998889998888888776543 377788999886543
No 42
>3nem_A Aspartyl-tRNA synthetase; rossmann fold, OB fold, ligase; HET: AMO ATP; 1.89A {Thermococcus kodakarensis} PDB: 3nel_A* 3nen_A 1b8a_A*
Probab=34.92 E-value=13 Score=38.51 Aligned_cols=98 Identities=15% Similarity=0.221 Sum_probs=56.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc----cccccCCCC---------CCCCCCcccccccccC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF----KDVFLGIEK---------RNYLRATSIQRCLRAG 70 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF----kp~flG~~~---------p~~~r~~~~QkCiR~g 70 (451)
++|-+.+-+||.++|...|..--|.+. ++.- .|-+.+| ++++|-+++ ....|+-..-+|.|.
T Consensus 141 s~i~~~iR~f~~~~gF~EVeTPiL~~~-~~eg---~~~~f~~~~~~~~~yL~~Spql~~q~l~~~g~~rvf~i~~~FR~- 215 (438)
T 3nem_A 141 SSVFKAVRDFFHENGFIEIHTPKIIAT-ATEG---GTELFPMKYFEEDAFLAQSPQLYKQIMMASGLDRVYEIAPIFRA- 215 (438)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESS-CSSC---SSSCCEEEETTEEEEECSCSHHHHHHGGGTTCCEEEEEEEEECC-
T ss_pred HHHHHHHHHHHHHCCcEEEeCCEEecC-CCCC---CccceeEeeCCccEEEecChHHHHHHHHhcCCCceEEEcceEEC-
Confidence 456778889999999888865444332 1100 0111111 233443322 134667778899998
Q ss_pred CCCCCCCCCCCCCCchhhhhhhcc-ccccc-c-----chHHHHHHHHHHh
Q psy13352 71 GKHNDLENVGYTNYHHTFFQMLGN-WSFGD-Y-----FKYESLQWTWELL 113 (451)
Q Consensus 71 GkhnDldnVG~t~rHhTfFEMLGN-fSFGd-Y-----fK~eaI~~awe~L 113 (451)
-+.+ |.||..=|-||-- .+|.| | .-++.|..++.-+
T Consensus 216 ---E~~~----t~RH~pEFt~le~e~a~~~~~~d~m~~~E~li~~~~~~v 258 (438)
T 3nem_A 216 ---EEHN----TTRHLNEAWSIDSEMAFIEDEEEVMSFLERLVAHAINYV 258 (438)
T ss_dssp ---CSSC----CTTCCSEEEEEEEEEESCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ---CCCC----CcccccceeeeeeeeccCccHHHHHHHHHHHHHHHHHHH
Confidence 3433 6899877888764 46666 6 2344455555443
No 43
>1n9w_A Aspartyl-tRNA synthetase 2; biosynthetic protein; 2.30A {Thermus thermophilus} SCOP: b.40.4.1 d.104.1.1 PDB: 3kfu_A*
Probab=34.32 E-value=13 Score=38.17 Aligned_cols=99 Identities=14% Similarity=0.205 Sum_probs=43.4
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCC-CC--Ccccccc-ccccccccccCCCC--------CCCCCCcccccccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDN-DS--SLLFTNS-GMVQFKDVFLGIEK--------RNYLRATSIQRCLRAGG 71 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~-dp--tllFtnA-GM~qFkp~flG~~~--------p~~~r~~~~QkCiR~gG 71 (451)
++|.+.+-+||.++|...|..--|.+.. .+ +++-|+. | ++++|-+++ ....|+-..-+|.|.
T Consensus 129 s~i~~~ir~~f~~~gF~EV~TPil~~~~~e~~~~~f~~~~~g----~~~~L~~Spel~~~~l~~g~~rvf~ig~~FR~-- 202 (422)
T 1n9w_A 129 AALVRGFRRYLDRQDFTEIFTPKVVRAGAEGGSGLFGVDYFE----KRAYLAQSPQLYKQIMVGVFERVYEVAPVWRM-- 202 (422)
T ss_dssp HHHHHHHHHHHHHTTCEECCCC--------------------------------CHHHHHHHHHHHSEEEEEEEC-----
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEeCCCCCceeEEEeeCC----CcEEeeeCHHHHHHHHhhCCCceeEEeCceEC--
Confidence 4677888899999999888754443321 11 1222221 1 123332111 013577788899997
Q ss_pred CCCCCCCCCCCCCchhhhhhhccc-ccc-ccchHHHHHHHHHHhhhh
Q psy13352 72 KHNDLENVGYTNYHHTFFQMLGNW-SFG-DYFKYESLQWTWELLTQI 116 (451)
Q Consensus 72 khnDldnVG~t~rHhTfFEMLGNf-SFG-dYfK~eaI~~awe~LT~~ 116 (451)
-+.+ ++||..=|-|+.-. +|. || +|.++.+.+++...
T Consensus 203 --E~~~----~~RH~pEFtqle~e~~~~~d~--~dlm~l~e~ll~~l 241 (422)
T 1n9w_A 203 --EEHH----TSRHLNEYLSLDVEMGFIADE--EDLMRLEEALLAEM 241 (422)
T ss_dssp ----------------CCEEEEEEEESCSSH--HHHHHHHHHHHHHH
T ss_pred --CCCC----CCcccceeEEeeeeeeCCCCH--HHHHHHHHHHHHHH
Confidence 3332 67999888888754 444 65 66777776665543
No 44
>3m4p_A Ehasnrs, asparaginyl-tRNA synthetase, putative; aminoacyl-tRNA synthetase, tRNA ligase, AARS, translation, ATP-binding, nucleotide-binding; HET: 4AD; 2.83A {Entamoeba histolytica} PDB: 3m4q_A
Probab=33.66 E-value=14 Score=38.44 Aligned_cols=85 Identities=18% Similarity=0.285 Sum_probs=49.8
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccC---CCCCccccccccccc-cccccCCCCC--------CCCCCcccccccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPD---NDSSLLFTNSGMVQF-KDVFLGIEKR--------NYLRATSIQRCLRAGG 71 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~---~dptllFtnAGM~qF-kp~flG~~~p--------~~~r~~~~QkCiR~gG 71 (451)
++|-+.+-+||.++|..-|..=-|.+. .-.+ +|. .+.| ++++|-+++. ...|+=..-+|.|.
T Consensus 160 s~i~~~iR~ff~~~gF~EVeTPiL~~s~~eGg~~-~f~---~~~~~~~~~L~~SpqL~lq~l~~g~~rVyeig~~FR~-- 233 (456)
T 3m4p_A 160 SEIQWYFRKYYHDNHFTEIQPPTIVKTQCEGGST-LFK---LQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRA-- 233 (456)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEEC------CC-CCE---EEETTEEEEECSCCHHHHHTTHHHHSSEEEEEEEECC--
T ss_pred HHHHHHHHHHHHhCCCEEEeCCeeecCCCCCccc-ccc---ccccCCCcccccCHHHHHHHHHhccCcEEEEEhheec--
Confidence 456777889999999888865433321 1111 121 1112 2334433321 14667778899997
Q ss_pred CCCCCCCCCCCCCchhhhhhhcc-cccccc
Q psy13352 72 KHNDLENVGYTNYHHTFFQMLGN-WSFGDY 100 (451)
Q Consensus 72 khnDldnVG~t~rHhTfFEMLGN-fSFGdY 100 (451)
-+++ |.||..=|-||-- .+|.||
T Consensus 234 --E~~~----t~rH~pEFtmlE~e~af~d~ 257 (456)
T 3m4p_A 234 --EQSR----TVRHLAEYLHLEAELPFISF 257 (456)
T ss_dssp --CSCC----CSSCCSEEEEEEEEEESCCH
T ss_pred --CCCC----CCcchHHHHHhHHHHhcCCH
Confidence 3322 7899888888754 367776
No 45
>3bju_A Lysyl-tRNA synthetase; aminoacyl-tRNA synthetase, ATP- binding, cytoplasm, ligase, nucleotide-binding, phosphoprotein, polymorphism; HET: LYS ATP; 2.31A {Homo sapiens}
Probab=33.36 E-value=14 Score=39.22 Aligned_cols=95 Identities=15% Similarity=0.179 Sum_probs=57.0
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc--------cccccCCCC---------CCCCCCcccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF--------KDVFLGIEK---------RNYLRATSIQRC 66 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF--------kp~flG~~~---------p~~~r~~~~QkC 66 (451)
++|-+.+-+||.++|..-|..--|.+.. ..|+.-+| ++++|-+++ ....|+=..-+|
T Consensus 180 s~i~~~iR~f~~~~gF~EVeTPiL~~~~------gGa~a~~F~t~~~~~~~~~yL~~SpqL~lk~liv~g~~rVyeig~~ 253 (521)
T 3bju_A 180 SKIITYIRSFLDELGFLEIETPMMNIIP------GGAVAKPFITYHNELDMNLYMRIAPELYHKMLVVGGIDRVYEIGRQ 253 (521)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSC------CSSSCCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCceeeccC------CCccccceeeecccCCcceEeeCCHHHHHHHHHhcCcCceEEEEcc
Confidence 3566677889999999888665444421 11222222 134444332 124677778999
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhc-ccccccc-----chHHHHHHHHHHh
Q psy13352 67 LRAGGKHNDLENVGYTNYHHTFFQMLG-NWSFGDY-----FKYESLQWTWELL 113 (451)
Q Consensus 67 iR~gGkhnDldnVG~t~rHhTfFEMLG-NfSFGdY-----fK~eaI~~awe~L 113 (451)
.|. - +++ .||..=|-||= -.+|.|| .-++-|..+|.-+
T Consensus 254 FR~----E---~~~--trH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 297 (521)
T 3bju_A 254 FRN----E---GID--LTHNPEFTTCEFYMAYADYHDLMEITEKMVSGMVKHI 297 (521)
T ss_dssp ECC----S---CCB--TTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred eeC----C---CCC--CccchhhhhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 997 2 233 49999888875 4577887 2344555555544
No 46
>2xgt_A Asparaginyl-tRNA synthetase, cytoplasmic; ligase, ATP-binding, protein biosynthesis; HET: NSS; 1.90A {Brugia malayi} PDB: 2xti_A*
Probab=33.02 E-value=15 Score=37.94 Aligned_cols=95 Identities=18% Similarity=0.211 Sum_probs=54.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCcc---CCCCCccccccccccc-cccccCCCCC--------CCCCCcccccccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIP---DNDSSLLFTNSGMVQF-KDVFLGIEKR--------NYLRATSIQRCLRAGG 71 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp---~~dptllFtnAGM~qF-kp~flG~~~p--------~~~r~~~~QkCiR~gG 71 (451)
++|-+.+-+||.++|...|..--|.+ .+--..+-+|+ | ++++|-+++. ...|+=..-+|.|.
T Consensus 136 s~i~~~iR~ff~~~gFlEVeTPiL~~s~~eG~~~~F~~~~----~g~~~~L~~SpqLylq~l~~g~~rvfeIg~~FR~-- 209 (435)
T 2xgt_A 136 AAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLDY----FGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRA-- 209 (435)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESCCSSCTTSCCEEEE----TTEEEEECSCSHHHHHHHHHHHCSEEEEEEEECC--
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEeeccCCCchhceeecc----CCcccccCCChHHHHHHhhhccCceEEEecceec--
Confidence 35667778999999988876433322 22212222221 1 1233433221 24677788899998
Q ss_pred CCCCCCCCCCCCCchhhhhhhcc-ccccccchHHHHHHHHHH
Q psy13352 72 KHNDLENVGYTNYHHTFFQMLGN-WSFGDYFKYESLQWTWEL 112 (451)
Q Consensus 72 khnDldnVG~t~rHhTfFEMLGN-fSFGdYfK~eaI~~awe~ 112 (451)
-|++ |.||..=|-||-- .||.|| ++.++.+-++
T Consensus 210 --E~~~----t~RH~~EFT~lE~e~af~d~--~d~m~~~E~l 243 (435)
T 2xgt_A 210 --EKSR----TRRHLAEYAHVEAECPFITL--DDLMEKIEEL 243 (435)
T ss_dssp --CSSC----CTTCCSEEEEEEEEEESCCH--HHHHHHHHHH
T ss_pred --CCCC----ccccccceeEEEEEEecCCH--HHHHHHHHHH
Confidence 4443 6799988888764 467776 4444444443
No 47
>3a74_A Lysyl-tRNA synthetase; aminoacyl tRNA synthetase, ligase, protein biosynthesis, AMI tRNA synthetase, ATP-binding, magnesium; HET: B4P LYN; 1.80A {Geobacillus stearothermophilus} PDB: 3e9h_A* 3e9i_A*
Probab=32.62 E-value=15 Score=38.66 Aligned_cols=100 Identities=16% Similarity=0.260 Sum_probs=58.1
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccC--CCCCccccccccccc-cccccCCCC---------CCCCCCcccccccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPD--NDSSLLFTNSGMVQF-KDVFLGIEK---------RNYLRATSIQRCLRAGG 71 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~--~dptllFtnAGM~qF-kp~flG~~~---------p~~~r~~~~QkCiR~gG 71 (451)
+.|-+.+-+||.++|...|..--|.+. ....-.|+.- .+.| ++++|-+++ ....|+=..-+|.|.
T Consensus 178 s~i~~~iR~ff~~~gF~EVeTPiL~~~~~Ga~a~~F~~~-~~~~~~~~yLr~SpqLylk~l~v~G~~rVyeig~~FR~-- 254 (493)
T 3a74_A 178 SLIIQSMRRYLDSHGYLEVETPMMHAVAGGAAARPFITH-HNALDMTLYMRIAIELHLKRLIVGGLEKVYEIGRVFRN-- 254 (493)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSCCSSSSCCCEEE-ETTTTEEEEECSCSHHHHHHHHHTTCCEEEEEEEEECC--
T ss_pred HHHHHHHHHHHHhCCeEEEECCeEEecCCCCcccceEec-ccCCCceeEEecCHHHHHHHHhhcccCceEEECccccC--
Confidence 356677888999999988865444432 1100112110 0011 223443322 124567778899997
Q ss_pred CCCCCCCCCCCCCchhhhhhhc-cccccccchHHHHHHHHHHhhh
Q psy13352 72 KHNDLENVGYTNYHHTFFQMLG-NWSFGDYFKYESLQWTWELLTQ 115 (451)
Q Consensus 72 khnDldnVG~t~rHhTfFEMLG-NfSFGdYfK~eaI~~awe~LT~ 115 (451)
-++ +.||..=|-||. -.+|.|| ++.++.+-+++..
T Consensus 255 --E~~-----~~rH~pEFT~lE~e~af~d~--~dlm~l~E~ll~~ 290 (493)
T 3a74_A 255 --EGI-----STRHNPEFTMLELYEAYADF--RDIMKLTENLIAH 290 (493)
T ss_dssp --CCC-----BTTBCSEEEEEEEEEETCCH--HHHHHHHHHHHHH
T ss_pred --CCC-----CcccCCceeEEEEEecCCCH--HHHHHHHHHHHHH
Confidence 333 359999999987 4577786 5566666666544
No 48
>1e1o_A Lysyl-tRNA synthetase, heat inducible; ligase, aminoacyl-tRNA synthetase, protein biosynthesis; HET: LYS; 2.12A {Escherichia coli} SCOP: b.40.4.1 d.104.1.1 PDB: 1e1t_A* 1e22_A* 1e24_A* 1lyl_A 1bbu_A* 1bbw_A 1krs_A 1krt_A
Probab=32.57 E-value=15 Score=38.79 Aligned_cols=99 Identities=20% Similarity=0.311 Sum_probs=55.7
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccC--CCCCccccccccccc-cccccCCCCC---------CCCCCcccccccccCC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPD--NDSSLLFTNSGMVQF-KDVFLGIEKR---------NYLRATSIQRCLRAGG 71 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~--~dptllFtnAGM~qF-kp~flG~~~p---------~~~r~~~~QkCiR~gG 71 (451)
+.|-+.+-+||.++|..-|..--|.+. .-..=.|+.- .+.| ++++|-+++. ...|+=..-+|.|.
T Consensus 187 s~i~~~iR~f~~~~gFlEVeTPiL~~~~~Ga~ar~F~t~-~~~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~FR~-- 263 (504)
T 1e1o_A 187 SKILAAIRQFMVARGFMEVETPMMQVIPGGASARPFITH-HNALDLDMYLRIAPELYLKRLVVGGFERVFEINRNFRN-- 263 (504)
T ss_dssp HHHHHHHHHHHHTTTCEECCCCSEESSCCSSCCCCCEEE-ETTTTEEEEECSCSHHHHHHHHHHTCCEEEEEEEEECC--
T ss_pred HHHHHHHHHHHHHCCCEEEECCeEEecCCCCcccceEec-cCCCCceEEeccCHHHHHHHHhhcCCCcEEEEcccccC--
Confidence 356677789999999888765444432 1000112110 0111 2344433321 24567778899997
Q ss_pred CCCCCCCCCCCCCchhhhhhhcc-ccccccchHHHHHHHHHHhh
Q psy13352 72 KHNDLENVGYTNYHHTFFQMLGN-WSFGDYFKYESLQWTWELLT 114 (451)
Q Consensus 72 khnDldnVG~t~rHhTfFEMLGN-fSFGdYfK~eaI~~awe~LT 114 (451)
-++ +.||..=|-||-- .+|.|| ++.+..+-+++.
T Consensus 264 --E~~-----~~rH~pEFt~lE~e~af~d~--~dlm~l~E~li~ 298 (504)
T 1e1o_A 264 --EGI-----SVRHNPEFTMMELYMAYADY--HDLIELTESLFR 298 (504)
T ss_dssp --CCC-----CC-CCSEEEEEEEEEESCCH--HHHHHHHHHHHH
T ss_pred --CCC-----CccccCceeeeeeeecCCCH--HHHHHHHHHHHH
Confidence 333 3599999999874 577787 455555555544
No 49
>4ex5_A Lysine--tRNA ligase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LYS; 2.40A {Burkholderia thailandensis}
Probab=32.15 E-value=15 Score=39.03 Aligned_cols=95 Identities=19% Similarity=0.229 Sum_probs=56.3
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCccccccccccc--------cccccCCCC---------CCCCCCcccccc
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQF--------KDVFLGIEK---------RNYLRATSIQRC 66 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM~qF--------kp~flG~~~---------p~~~r~~~~QkC 66 (451)
+.|-+.+-+||.++|..-|..=-|.+.. -.|..-+| ++.+|-+++ ....|+-..-+|
T Consensus 208 s~i~~~iR~ff~~~gFlEVeTPiL~~~~------gGA~a~pF~t~~n~~~~~~yL~~SpqLylk~L~v~G~~rVyeIg~~ 281 (529)
T 4ex5_A 208 TKAIASIRKFMGDADFMEVETPMLHPIP------GGAAAKPFVTHHNALDMEMFLRIAPELYLKRLIVGGFERVFEINRN 281 (529)
T ss_dssp HHHHHHHHHHHHHTTCEECCCCSEESSC------CSSSSCCCEEEETTTTEEEEECSCSHHHHHHHHHTTCSEEEEEEEE
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeeccC------CCCcccccccccccCCcceecccCHHHHHHHHHhcCCCcEEEeehh
Confidence 3566777899999999888654444311 11222223 233443332 134677778999
Q ss_pred cccCCCCCCCCCCCCCCCchhhhhhhcc-ccccccc-----hHHHHHHHHHHh
Q psy13352 67 LRAGGKHNDLENVGYTNYHHTFFQMLGN-WSFGDYF-----KYESLQWTWELL 113 (451)
Q Consensus 67 iR~gGkhnDldnVG~t~rHhTfFEMLGN-fSFGdYf-----K~eaI~~awe~L 113 (451)
.|. -+ + +.||..=|-||=- .+|.||- -++-|..++.-+
T Consensus 282 FR~----E~---~--~~rH~pEFtmlE~e~af~d~~dlm~l~E~li~~v~~~v 325 (529)
T 4ex5_A 282 FRN----EG---V--SPRHNPEFTMMEFYAAYTDYRWLMDFTERLIRQAAVDA 325 (529)
T ss_dssp ECC----SC---C--BTTBCSEEEEEEEEEETCCHHHHHHHHHHHHHHHHHHH
T ss_pred eec----CC---C--CCCcccHhHhhhhhhhcCCHHHHHHHHHHHHHHHHHHH
Confidence 997 23 2 3699999988754 3677872 344455555433
No 50
>3i7f_A Aspartyl-tRNA synthetase; tRNA ligase, APO, ATP-binding, aminoacyl-tRNA synthetase, LI nucleotide-binding, protein biosynthesis; 2.80A {Entamoeba histolytica}
Probab=31.82 E-value=16 Score=39.19 Aligned_cols=28 Identities=29% Similarity=0.457 Sum_probs=23.3
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhh
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLF 262 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF 262 (451)
++=--|+|+|||++.+-|.+|.=|+-+|
T Consensus 512 PhgG~GlGiDRLvMlltg~~nIRdVi~F 539 (548)
T 3i7f_A 512 PHAGCGIGLERITMLYLGIPNIRKVTLF 539 (548)
T ss_dssp CEEEEEEEHHHHHHHHTTCSCGGGGSSS
T ss_pred CceEEEEcHHHHHHHHhCCccHHHhhcC
Confidence 3567899999999999999998776554
No 51
>1eov_A ASPRS, aspartyl-tRNA synthetase; aminoacyl tRNA synthetase, tRNA ligase, APO-enzyme, OB-fold,; 2.30A {Saccharomyces cerevisiae} SCOP: b.40.4.1 d.104.1.1 PDB: 1asy_A* 1asz_A*
Probab=31.58 E-value=16 Score=38.33 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=23.5
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhh
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLF 262 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF 262 (451)
++=--|+|+|||+++|-|.+|.=|+=+|
T Consensus 451 PhgG~glGiDRLvmll~g~~~IRdVi~F 478 (487)
T 1eov_A 451 PHAGGGIGLERVVMFYLDLKNIRRASLF 478 (487)
T ss_dssp CEEEEEEEHHHHHHHHTTCSSGGGGCSS
T ss_pred CCeEEEEhHHHHHHHHcCCCcHHheeec
Confidence 6777899999999999999997766444
No 52
>3il3_A 3-oxoacyl-[acyl-carrier-protein] synthase 3; FABH, fatty acid biosynthesis, antibiotic, acyltransferase, cytoplasm, lipid synthesis; 2.70A {Haemophilus influenzae}
Probab=31.30 E-value=16 Score=35.53 Aligned_cols=76 Identities=14% Similarity=0.168 Sum_probs=50.5
Q ss_pred hhhhhhccccccccchHHHHHHHHHHhhhhcCCCCCce-EEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCCCCCCC
Q psy13352 87 TFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERL-WITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSD 165 (451)
Q Consensus 87 TfFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL-~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~~~~~d 165 (451)
.++.|.|...|.-+- +.+.-+++-+.+..|++++.+ |+-.+....-..+-+.+.+|+|++++..
T Consensus 209 ~~~~~~g~~v~~~~~--~~~~~~i~~~l~~~gl~~~did~~v~Hq~~~~i~~~~~~~lgl~~ek~~~------------- 273 (323)
T 3il3_A 209 GYIEMQGNETFKLAV--RELSNVVEETLLANNLDKKDLDWLVPHQANLRIITATAKKLEMDMSQVVV------------- 273 (323)
T ss_dssp SCCEECHHHHHHHHH--HHHHHHHHHHHHTTTCCTTTCCEEEECCSCHHHHHHHHHHTTCCGGGBCC-------------
T ss_pred CcEEEcCHHHHHHHH--HHHHHHHHHHHHHcCCCHHHCCEEEEcCCCHHHHHHHHHHcCcCHHHhhc-------------
Confidence 357788877664321 233334444445679999988 6667777777777777778999888642
Q ss_pred CcccCCCCCCCCCce
Q psy13352 166 NFWQMSDTGPCGPCS 180 (451)
Q Consensus 166 NfW~~G~~GPCGPcs 180 (451)
| ....|+||.+|
T Consensus 274 ~---l~~~GNt~sas 285 (323)
T 3il3_A 274 T---LDKYANNSAAT 285 (323)
T ss_dssp C---HHHHCBCGGGH
T ss_pred c---HhhcCchHHHH
Confidence 2 23457888887
No 53
>2zc2_A DNAD-like replication protein; GI 24377835, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Streptococcus mutans UA159}
Probab=30.44 E-value=41 Score=25.92 Aligned_cols=29 Identities=14% Similarity=-0.098 Sum_probs=22.3
Q ss_pred CCCCh---HHHHHHHhcCCCCHHhHHHHHHHc
Q psy13352 389 DKLDG---KLAFILYDTYGFPIDLTIDICKEH 417 (451)
Q Consensus 389 ~~l~g---~~af~LydtyGfP~dlt~eia~e~ 417 (451)
..+++ +.+-.++|.||||.|++.+.+++.
T Consensus 16 r~ls~~e~~~i~~w~~~~~~~~elI~~A~~~a 47 (78)
T 2zc2_A 16 RMLSPFELEDLQKTVSDDKTDPDLVRSALREA 47 (78)
T ss_dssp SCCCHHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34554 445678999999999999988774
No 54
>4gyx_A Type III collagen fragment in A HOST peptide STAB the cysteine knot; collagen triple helix, type III collagen cysteine knot, BLOO clotting; 1.49A {Homo sapiens}
Probab=29.73 E-value=19 Score=23.60 Aligned_cols=10 Identities=50% Similarity=1.222 Sum_probs=7.2
Q ss_pred CCCCCCCCce
Q psy13352 171 SDTGPCGPCS 180 (451)
Q Consensus 171 G~~GPCGPcs 180 (451)
|+.||-|||.
T Consensus 19 gppgppgpcc 28 (31)
T 4gyx_A 19 GPPGPPGPCC 28 (31)
T ss_dssp CCCCCCCCCC
T ss_pred CCCCCCCCCc
Confidence 4667888884
No 55
>1iq3_A Ralbp1-interacting protein (partner of ralbp1); EF-hand domain, POB1 EH domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=29.54 E-value=75 Score=25.92 Aligned_cols=47 Identities=11% Similarity=0.114 Sum_probs=38.3
Q ss_pred CCCCCChHHHHHHHhcCCCCHHhHHHHHHHcCC----ccCHhhHHHHHHHH
Q psy13352 387 KPDKLDGKLAFILYDTYGFPIDLTIDICKEHNV----SFNKNDFILEMEKQ 433 (451)
Q Consensus 387 ~~~~l~g~~af~LydtyGfP~dlt~eia~e~gi----~vd~~~f~~~~~~q 433 (451)
+.+.|+.+++-.+..+.|++-+.+.+|.++... .||.++|..+|...
T Consensus 35 ~dG~Is~~el~~~l~~~gl~~~el~~i~~~~D~d~dG~I~~~EF~~~m~~~ 85 (110)
T 1iq3_A 35 PSSFISGSVAKNFFTKSKLSIPELSYIWELSDADCDGALTLPEFCAAFHLI 85 (110)
T ss_dssp SSSEEEHHHHHHHCCSSSCSSCCHHHHHHHHCSSSCSEEEHHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCcHHHHHHHHHHH
Confidence 456899999999999999998888888887544 37788999998644
No 56
>1c0a_A Aspartyl tRNA synthetase; protein-RNA complex, ligase/RNA complex; HET: 4SU H2U QUO G7M 5MU PSU AMP AMO; 2.40A {Escherichia coli} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1il2_A* 1eqr_A*
Probab=28.96 E-value=19 Score=38.69 Aligned_cols=29 Identities=24% Similarity=0.295 Sum_probs=24.6
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
+|=--|+|+|||+++|-|.+|.=|+=.|.
T Consensus 527 PhgG~glGlDRLvmlltg~~sIRdVi~FP 555 (585)
T 1c0a_A 527 PHAGLAFGLDRLTMLLTGTDNIRDVIAFP 555 (585)
T ss_dssp CEEEEEEEHHHHHHHHHTCSCGGGGSSSC
T ss_pred CceeEEEcHHHHHHHHcCCCcHHheecCC
Confidence 67788999999999999999987775554
No 57
>1l0w_A Aspartyl-tRNA synthetase; space-grown crystal, dimeric enzyme, flexible domains, ligase; 2.01A {Thermus thermophilus} SCOP: b.40.4.1 d.74.4.1 d.104.1.1 PDB: 1efw_A* 1g51_A
Probab=28.35 E-value=20 Score=38.55 Aligned_cols=29 Identities=21% Similarity=0.190 Sum_probs=24.7
Q ss_pred CccccCchHHHHHHHHhcCCCccchhhhH
Q psy13352 235 YCVDTGMGLERLASILQNVYNNYETDLFK 263 (451)
Q Consensus 235 k~IDTGmGLERl~~vlQg~~snYdtDlF~ 263 (451)
+|=--|+|+|||+++|-|.+|.=|+=.|.
T Consensus 521 PhgG~glGlDRLvMll~g~~sIRdVi~FP 549 (580)
T 1l0w_A 521 PHGGIAWGLDRLLALMTGSPSIREVIAFP 549 (580)
T ss_dssp CEEEEEEEHHHHHHHHHTCSSGGGGSSSC
T ss_pred CCceEEEcHHHHHHHHcCCCcHHeEecCC
Confidence 67788999999999999999987775543
No 58
>3h78_A PQS biosynthetic enzyme; PQSD, anthranilic acid, anthraniloyl-COA, transferase; HET: BE2; 1.70A {Pseudomonas aeruginosa PAO1} PDB: 3h76_A 3h77_A*
Probab=28.34 E-value=16 Score=36.28 Aligned_cols=75 Identities=13% Similarity=0.189 Sum_probs=49.3
Q ss_pred hhhhhccccccccchHHHHHHHHHHhhhhcCCCCCce-EEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCCCCCCCC
Q psy13352 88 FFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERL-WITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDN 166 (451)
Q Consensus 88 fFEMLGNfSFGdYfK~eaI~~awe~LT~~lgl~~~rL-~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~~~~~dN 166 (451)
+|.|.|...|.-+ -+.+.-+++-+.+..|++++.| |+-.+....-..+-+.+.+|+|++|+.. |
T Consensus 240 ~~~m~g~~v~~~~--~~~~~~~i~~~L~~~gl~~~did~~v~Hq~n~~i~~~~~~~lgl~~ek~~~-------------~ 304 (359)
T 3h78_A 240 EFLMRGRPMFEHA--SQTLVRIAGEMLAAHELTLDDIDHVICHQPNLRILDAVQEQLGIPQHKFAV-------------T 304 (359)
T ss_dssp SCEECHHHHHHHH--HHHHHHHHHHHHHHTTCCGGGCSEEEECCSCHHHHHHHHHHHTCCGGGBCC-------------C
T ss_pred ceEeccHHHHHHH--HHHHHHHHHHHHHHcCCCHHHCCEEEECCCCHHHHHHHHHHhCcCHHHhhh-------------h
Confidence 5778777655422 2233344444445679999998 6667777766677777778999887642 2
Q ss_pred cccCCCCCCCCCce
Q psy13352 167 FWQMSDTGPCGPCS 180 (451)
Q Consensus 167 fW~~G~~GPCGPcs 180 (451)
+...|+||.+|
T Consensus 305 ---l~~~GNt~sAs 315 (359)
T 3h78_A 305 ---VDRLGNMASAS 315 (359)
T ss_dssp ---HHHHCBCGGGH
T ss_pred ---hhcccchHHHH
Confidence 23457888887
No 59
>3fia_A Intersectin-1; EH 1 domain, NESG, structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 1.45A {Homo sapiens} PDB: 2khn_A
Probab=26.49 E-value=1.1e+02 Score=26.12 Aligned_cols=46 Identities=15% Similarity=0.253 Sum_probs=37.8
Q ss_pred CCCCChHHHHHHHhcCCCCHHhHHHHHHHcCC----ccCHhhHHHHHHHH
Q psy13352 388 PDKLDGKLAFILYDTYGFPIDLTIDICKEHNV----SFNKNDFILEMEKQ 433 (451)
Q Consensus 388 ~~~l~g~~af~LydtyGfP~dlt~eia~e~gi----~vd~~~f~~~~~~q 433 (451)
.+.|+|+++-.++-.-|+|.+...+|-....+ .+|.++|..+|.--
T Consensus 46 dG~Isg~elr~~~~~sgLp~~~L~~Iw~laD~d~dG~Ld~~EF~~aM~Li 95 (121)
T 3fia_A 46 SGFITGDQARNFFFQSGLPQPVLAQIWALADMNNDGRMDQVEFSIAMKLI 95 (121)
T ss_dssp TTBEEHHHHHHHHGGGCCCHHHHHHHHHHHCTTCSSEECHHHHHHHHHHH
T ss_pred CCeECHHHHHHHHHHcCCCHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHH
Confidence 56899999999999999999999998877654 46678899988543
No 60
>1apy_A Aspartylglucosaminidase; glycosylasparaginase, hydrolase; HET: NAG BMA; 2.00A {Homo sapiens} SCOP: d.153.1.5 PDB: 1apz_A*
Probab=24.76 E-value=84 Score=28.39 Aligned_cols=51 Identities=16% Similarity=0.379 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhhhhcCCCCCceEEEEeCCcHHHHHHHHhhcCCCCCceeecCCCCCCCCCCCCCcccCC---CCCCCCCc
Q psy13352 103 YESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMS---DTGPCGPC 179 (451)
Q Consensus 103 ~eaI~~awe~LT~~lgl~~~rL~vTv~~~D~Ea~~iW~~~~Gv~~~rI~~~g~~~~~~~~~~dNfW~~G---~~GPCGPc 179 (451)
+-|-+||.+ .|++.+.| -.+++++.|++.. +++ .. -|||..- ++..|||.
T Consensus 107 ~GA~~fA~~-----~G~~~~~l------~t~~~~~~~~~~~---~~~-----~q--------pn~~~nv~p~~~~~cgpy 159 (162)
T 1apy_A 107 ESATTFAQS-----MGFINEDL------STSASQALHSDWL---ARN-----CQ--------PNYWRNVIPDPSKYCGPY 159 (162)
T ss_dssp HHHHHHHHH-----TTCCCCCC------CCHHHHHHHHHHH---HTT-----SC--------SCCBCSCBSCTTTCCSCC
T ss_pred HHHHHHHHH-----cCCCcccc------CCHHHHHHHHHHH---Hhc-----cC--------CCccccCCCCCCCCCCCC
Confidence 345556654 47876432 2467777777641 111 12 7999653 35679985
Q ss_pred e
Q psy13352 180 S 180 (451)
Q Consensus 180 s 180 (451)
.
T Consensus 160 ~ 160 (162)
T 1apy_A 160 K 160 (162)
T ss_dssp B
T ss_pred C
Confidence 3
No 61
>4i4d_A Peptide synthetase NRPS type II-PCP; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MLY; 2.10A {Streptomyces verticillus}
Probab=23.69 E-value=45 Score=26.16 Aligned_cols=24 Identities=21% Similarity=0.617 Sum_probs=17.8
Q ss_pred HHHHHHhhcCCCCCceeecCCCCCCCCCCCCCcccCC
Q psy13352 135 TYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMS 171 (451)
Q Consensus 135 a~~iW~~~~Gv~~~rI~~~g~~~~~~~~~~dNfW~~G 171 (451)
-.+||.+++|++. ++.. +||+++|
T Consensus 21 l~~i~~~vL~~~~-----i~~~--------~~Ff~lG 44 (93)
T 4i4d_A 21 IAAIWAETLGRDS-----VGPH--------EDFAALG 44 (93)
T ss_dssp HHHHHHHHHTCSC-----CCTT--------CCTTTTT
T ss_pred HHHHHHHHhCCCC-----CCCC--------CCHHHcC
Confidence 3579999988842 4445 9999988
No 62
>2dq3_A Seryl-tRNA synthetase; coiled-coil, homodimer, structural genomics, NPPSFA, nationa on protein structural and functional analyses; HET: SSA; 3.00A {Aquifex aeolicus}
Probab=23.64 E-value=29 Score=35.59 Aligned_cols=106 Identities=16% Similarity=0.208 Sum_probs=60.2
Q ss_pred HHHHHHHHHhhhhCCCeeecCCCCccCCCCCcccccccc--------cccc--cccc-CCCCC---------------CC
Q psy13352 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGM--------VQFK--DVFL-GIEKR---------------NY 57 (451)
Q Consensus 4 ~eiR~~Fl~fF~~~gH~~vps~slvp~~dptllFtnAGM--------~qFk--p~fl-G~~~p---------------~~ 57 (451)
..|.+.+++.|.++|++.|-.-.+++.. +|..+|. ..|. .+.| .+..+ -.
T Consensus 176 ~~L~~~~~~~~~~~Gy~ev~tP~l~~~~----l~~~sG~~~~f~~emy~~~~~~l~LrPt~e~~i~~~~~~~i~s~~~LP 251 (425)
T 2dq3_A 176 RALINFMLDLHTKKGYKEICPPHLVKPE----ILIGTGQLPKFEEDLYKCERDNLYLIPTAEVPLTNLYREEILKEENLP 251 (425)
T ss_dssp HHHHHHHHHHHHHTTCEEEECCSEECHH----HHHHHSCTTTTGGGSCBCTTTCCEECSSTHHHHHGGGTTEEEETTTCC
T ss_pred HHHHHHHHHHHHHcCCEEEECCccccHH----HHHhcCCCCcChhhheEecCCeEEEcCCCcHHHHHHHHhhccccccCC
Confidence 3567788889999999998776666521 2222221 1111 1111 11111 02
Q ss_pred CCCcccccccccCCCCCCCCCCCCCC----Cchhhhhhhcccccccc-----chHHHHHHHHHHhhhhcCCC
Q psy13352 58 LRATSIQRCLRAGGKHNDLENVGYTN----YHHTFFQMLGNWSFGDY-----FKYESLQWTWELLTQIYGLS 120 (451)
Q Consensus 58 ~r~~~~QkCiR~gGkhnDldnVG~t~----rHhTfFEMLGNfSFGdY-----fK~eaI~~awe~LT~~lgl~ 120 (451)
-|++-.++|.|- ....-|++. |=|. |.|..-++|+.= .-+|.+..+.++|. .||||
T Consensus 252 lrl~~~g~~FR~-----E~~~~Gr~~~Gl~R~re-F~q~E~~~f~~pe~s~~~~~e~i~~~~~il~-~LGL~ 316 (425)
T 2dq3_A 252 IYLTAYTPCYRR-----EAGAYGKDIRGIIRQHQ-FDKVELVKIVHPDTSYDELEKLVKDAEEVLQ-LLGLP 316 (425)
T ss_dssp EEEEEEEEEECC-----CCSCCSSSCSSSSSCSE-EEEEEEEEEECGGGHHHHHHHHHHHHHHHHH-HHTCC
T ss_pred eEEEEecCEecC-----CCCcccccccCcccccc-eEEeeEEEECCHHHHHHHHHHHHHHHHHHHH-HCCCc
Confidence 367778899995 443333221 3333 456666888632 22677888999885 58997
No 63
>3mlc_A FG41 malonate semialdehyde decarboxylase; tautomerase superfamily, malonate semialdehyde decarboxylase alpha-beta-motif; 2.22A {Coryneform bacterium} SCOP: d.80.1.0 PDB: 3mjz_A
Probab=21.65 E-value=57 Score=28.01 Aligned_cols=29 Identities=17% Similarity=0.096 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHhhhhcCCCCCceEEEEeC
Q psy13352 101 FKYESLQWTWELLTQIYGLSIERLWITVYI 130 (451)
Q Consensus 101 fK~eaI~~awe~LT~~lgl~~~rL~vTv~~ 130 (451)
-|++-++-.-+.| +.+|++++.++|++.+
T Consensus 80 qK~~L~~~it~~l-~~lg~~~~~v~V~i~E 108 (136)
T 3mlc_A 80 TKQRVFAAITESL-APIGVAGSDVFIAITE 108 (136)
T ss_dssp HHHHHHHHHHHHH-TTTTCCGGGEEEEEEE
T ss_pred HHHHHHHHHHHHH-HHcCCCcccEEEEEEE
Confidence 5777788888888 9999999999999765
No 64
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=21.20 E-value=2.3e+02 Score=21.28 Aligned_cols=45 Identities=7% Similarity=0.042 Sum_probs=34.5
Q ss_pred CCCCCChHHHHHHHhcCCCCHHhHHHHHHHcCC----ccCHhhHHHHHH
Q psy13352 387 KPDKLDGKLAFILYDTYGFPIDLTIDICKEHNV----SFNKNDFILEME 431 (451)
Q Consensus 387 ~~~~l~g~~af~LydtyGfP~dlt~eia~e~gi----~vd~~~f~~~~~ 431 (451)
+.+.|+.+++-.+....|++.+-+.++..+... .|+.++|...+.
T Consensus 40 ~~G~I~~~El~~~l~~~g~~~~~~~~~~~~~D~d~dg~I~~~EF~~~~~ 88 (91)
T 2pmy_A 40 RSGRLEREEFRALCTELRVRPADAEAVFQRLDADRDGAITFQEFARGFL 88 (91)
T ss_dssp CSSSEEHHHHHHHHHHTTCCHHHHHHHHHHHCTTCSSEECHHHHTHHHH
T ss_pred CCCCCcHHHHHHHHHHcCcCHHHHHHHHHHhCCCCCCCEeHHHHHHHHH
Confidence 456899999999998899988888888776543 367777877663
No 65
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=20.27 E-value=1.4e+02 Score=22.04 Aligned_cols=47 Identities=13% Similarity=0.085 Sum_probs=33.4
Q ss_pred CCCCCChHHHHHHHhcCCCC--HHhHHHHHHHcCC----ccCHhhHHHHHHHH
Q psy13352 387 KPDKLDGKLAFILYDTYGFP--IDLTIDICKEHNV----SFNKNDFILEMEKQ 433 (451)
Q Consensus 387 ~~~~l~g~~af~LydtyGfP--~dlt~eia~e~gi----~vd~~~f~~~~~~q 433 (451)
+.+.|+.+++-.+..+.|.+ .+-+.++..+... .|+.+.|...|...
T Consensus 22 ~~G~i~~~el~~~l~~~g~~~~~~~~~~l~~~~d~~~dg~i~~~eF~~~~~~~ 74 (92)
T 2kn2_A 22 QNGYISASELRHVMINLGEKLTDEEVEQMIKEADLDGDGQVNYEEFVKMMMTV 74 (92)
T ss_dssp CSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCCSSEEHHHHHHHHHHH
T ss_pred CCCeEcHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCCCCcEeHHHHHHHHHhc
Confidence 34689999999999888854 4556666665432 47778898888544
Done!