RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy13352
(451 letters)
>gnl|CDD|234701 PRK00252, alaS, alanyl-tRNA synthetase; Reviewed.
Length = 865
Score = 748 bits (1934), Expect = 0.0
Identities = 260/447 (58%), Positives = 313/447 (70%), Gaps = 19/447 (4%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
M S EI KFL FF+SKGHT+VPS+SL+P ND +LLFTN+GMVQFKD FLG EK Y RA
Sbjct: 2 MTSAEIRQKFLDFFESKGHTVVPSASLVPKNDPTLLFTNAGMVQFKDYFLGQEKPPYPRA 61
Query: 61 TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
T+ Q+C+R NDLENVGYT HHTFF+MLGN+SFGDYFK E+++W WELLT + GL
Sbjct: 62 TTSQKCIRT----NDLENVGYTARHHTFFEMLGNFSFGDYFKEEAIEWAWELLTSVLGLP 117
Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
E+L++TVY DDE Y+IW +IGVP ER+IRIG K DNFW M DTGPCGPCS
Sbjct: 118 KEKLYVTVYEDDDEAYDIWKKEIGVPPERIIRIGKK--------DNFWSMGDTGPCGPCS 169
Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
EIFYD G + G PPGS E G+RYIEIWN VFMQFN++ + LT LPK +DTG
Sbjct: 170 EIFYDRGEEYWGGPPGSPEEDGDRYIEIWNLVFMQFNRDEDGN-----LTPLPKKNIDTG 224
Query: 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIIDG 300
MGLER+A++LQ V++NYETDLF+ LIKA T + S +VIADHIRA FLI DG
Sbjct: 225 MGLERIAAVLQGVHSNYETDLFRPLIKAIEELTGVKYEDDVSFRVIADHIRAVAFLIADG 284
Query: 301 VFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEE 360
V P NEGRGYVLRRI+RRA+R+G LG FLYKLV +I Y ELK IE+
Sbjct: 285 VLPSNEGRGYVLRRILRRAVRHGRLLGIKEPFLYKLVPVVIDEMGDAYPELKEKQDLIEK 344
Query: 361 ILKKEEECFRKTLKYGIKILENIL--LTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHN 418
+LK EEE F KTL+ G+K+LE L L L G+ AF LYDTYGFP+DLT +I +E
Sbjct: 345 VLKAEEERFLKTLERGLKLLEEALAKLKAGKVLSGEDAFKLYDTYGFPLDLTAEIARERG 404
Query: 419 VSFNKNDFILEMEKQRNNARLNSKFKD 445
++ ++ F ME+QR AR KFK
Sbjct: 405 LTVDEEGFEAAMEEQRERARAARKFKG 431
>gnl|CDD|223092 COG0013, AlaS, Alanyl-tRNA synthetase [Translation, ribosomal
structure and biogenesis].
Length = 879
Score = 628 bits (1623), Expect = 0.0
Identities = 238/450 (52%), Positives = 303/450 (67%), Gaps = 26/450 (5%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLG-IEKRNYLR 59
+ + EI KFL FF+ KGHT+VPSS L+P ND +LLFTN+GMVQFK F G + R
Sbjct: 6 LTTNEIRQKFLDFFEKKGHTVVPSSPLVPRNDPTLLFTNAGMVQFKPYFTGGVTPPAN-R 64
Query: 60 ATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGL 119
A + Q+C+R ND++NVGYT HHTFF+MLGN+SFGDYFK E++++ WE LT++ GL
Sbjct: 65 AVTSQKCIRT----NDIDNVGYTARHHTFFEMLGNFSFGDYFKEEAIEFAWEFLTKVLGL 120
Query: 120 SIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPC 179
E+L++TVY DDE YN W IG+P ER+IRIG SDNFW+M D GPCGPC
Sbjct: 121 PKEKLYVTVYEDDDEAYNEWEKIIGIPPERIIRIG--------ASDNFWEMGD-GPCGPC 171
Query: 180 SEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDT 239
SEIFYD G G PPGS + G+RY+EIWN VFMQ+N+ +P G+ T LPK +DT
Sbjct: 172 SEIFYDRGEEIGGGPPGSPDEDGDRYLEIWNLVFMQYNR--DPGDGN--YTPLPKKNIDT 227
Query: 240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNN-----SLKVIADHIRACV 294
GMGLER+A++LQ V NY+TDLF+ +IKA + T ++ S +VIADHIR+
Sbjct: 228 GMGLERIAAVLQGVPTNYDTDLFRPIIKAIEKLTGKKYGEDEEDPDVSFRVIADHIRSLA 287
Query: 295 FLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKIS 354
F+I DGV P NEGRGYVLRRIIRRA+R+G LG FLYKLV +I Y ELK
Sbjct: 288 FMIADGVLPSNEGRGYVLRRIIRRALRHGKLLGIKEPFLYKLVDTVIDEMGDAYPELKEK 347
Query: 355 VIKIEEILKKEEECFRKTLKYGIKILENIL--LTKPDKLDGKLAFILYDTYGFPIDLTID 412
I+E+LK EEE F KTL+ G+K+LE L L K LDG+ AF LYDTYGFP++LT +
Sbjct: 348 EDFIKEVLKLEEERFAKTLERGLKLLEKELAKLKKSKTLDGEDAFKLYDTYGFPVELTEE 407
Query: 413 ICKEHNVSFNKNDFILEMEKQRNNARLNSK 442
I +E + ++ F ME QR AR ++
Sbjct: 408 IAEERGLKVDEPGFEYAMEAQRERARASAG 437
>gnl|CDD|216484 pfam01411, tRNA-synt_2c, tRNA synthetases class II (A). Other tRNA
synthetase sub-families are too dissimilar to be
included. This family includes only alanyl-tRNA
synthetases.
Length = 551
Score = 594 bits (1534), Expect = 0.0
Identities = 235/454 (51%), Positives = 301/454 (66%), Gaps = 21/454 (4%)
Query: 5 EICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIE-KRNYLRATSI 63
EI FL FF+ KGHT+VPSS ++P ND +LLFTN+GM QFK +FLG E K Y RA +
Sbjct: 1 EIRQTFLDFFEKKGHTVVPSSPVVPRNDPTLLFTNAGMNQFKPIFLGGEAKPPYNRAVNS 60
Query: 64 QRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIER 123
Q+C+RAGGKHNDLENVG T HHTFF+MLGN+SFGDYFK E++++ WELLT++ GL ER
Sbjct: 61 QKCIRAGGKHNDLENVGRTARHHTFFEMLGNFSFGDYFKEEAIEFAWELLTKVLGLDPER 120
Query: 124 LWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIF 183
L++TVY DDE IW +G+P+ER++R GDK DNFW+M DTGPCGPCSEI
Sbjct: 121 LYVTVYEWDDEAGPIWEKIVGIPEERILRFGDK--------DNFWEMGDTGPCGPCSEID 172
Query: 184 YDCGSTFHGNPPGSKENFGN-RYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMG 242
YD G G P G + R++EIWN VFMQFN+E L LPK +DTGMG
Sbjct: 173 YDRGEEIGGWPSGGPPTADDDRFLEIWNLVFMQFNRE-----SDGTLKPLPKKSIDTGMG 227
Query: 243 LERLASILQNVYNNYETDLFKTLIKAAARETN----CNNLKNNSLKVIADHIRACVFLII 298
LERL ++LQNV +NY+TDLF LI+ + + + + +VIADH RA F I
Sbjct: 228 LERLVAVLQNVRSNYDTDLFIPLIELIEEISGAKYYTKDETDEAYRVIADHTRALTFAIA 287
Query: 299 DGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKI 358
DGV P NEGRGYVLRRI+RRA+R+ KLG FLYKLV +I Y ELK I
Sbjct: 288 DGVVPSNEGRGYVLRRILRRAVRHAKKLGLKEPFLYKLVPTVIEEMGDAYPELKEKEDTI 347
Query: 359 EEILKKEEECFRKTLKYGIKILENIL--LTKPDKLDGKLAFILYDTYGFPIDLTIDICKE 416
+EIL+ EEE F KTL+ G+++LE ++ L K L G+ AF LYDTYGFP+DLT +I +E
Sbjct: 348 QEILELEEERFAKTLERGLRLLERLIKSLKKSKTLPGEDAFKLYDTYGFPVDLTQEIAEE 407
Query: 417 HNVSFNKNDFILEMEKQRNNARLNSKFKDIKLNI 450
++ + F M +QR ++ K K +L++
Sbjct: 408 RGLTVDMPGFEKAMVEQRERSKQAVKEKGEELDV 441
>gnl|CDD|215487 PLN02900, PLN02900, alanyl-tRNA synthetase.
Length = 936
Score = 555 bits (1432), Expect = 0.0
Identities = 221/471 (46%), Positives = 288/471 (61%), Gaps = 51/471 (10%)
Query: 10 FLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLG-----IEKRNYLRATSIQ 64
FLSFF+SKGHT +PSS L+P +D +LLFTN+GM QFK +FLG R RAT+ Q
Sbjct: 20 FLSFFESKGHTFLPSSPLVPVDDPTLLFTNAGMNQFKPIFLGTADPNTPLRKLPRATNTQ 79
Query: 65 RCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERL 124
+C+RAGGKHNDL++VG YHHTFF+MLGNWSFGDYFK E++ W WELLT++YGL +RL
Sbjct: 80 KCIRAGGKHNDLDDVGKDTYHHTFFEMLGNWSFGDYFKKEAIGWAWELLTKVYGLPADRL 139
Query: 125 WITVY------ITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGP 178
+ T + DDE IW + +P+ERV+ G K DNFW+M DTGPCGP
Sbjct: 140 YATYFGGDEKQAPDDEARAIWLDY--LPEERVLPFGCK--------DNFWEMGDTGPCGP 189
Query: 179 CSEIFYDCGSTFHGNPPGSKENFGN--RYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYC 236
CSEI YD G + + R+IEIWN VF+QFN+E + GS+K LP
Sbjct: 190 CSEIHYD----RIGERDAADLVNNDDPRFIEIWNLVFIQFNREAD---GSLKP--LPAKH 240
Query: 237 VDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETN-----------CNNLKNNSLKV 285
VDTGMGLERLASILQN +NY+TDLF + A T ++ + + +V
Sbjct: 241 VDTGMGLERLASILQNKPSNYDTDLFMPIFDAIQEATGARPYAGKVGAEDDDRVDMAYRV 300
Query: 286 IADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGY-KLGQNSIFLYKLVKDLIFNT 344
+ADHIR F I DGV P NEGRGYVLRR++RRA+RYG LG F LV+ ++ +
Sbjct: 301 VADHIRTLSFAIADGVVPSNEGRGYVLRRLLRRAVRYGRLLLGAEEGFFPALVEVVVELS 360
Query: 345 YIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILENIL----LTKPDKLDGKLAFILY 400
++ E+K + +I EI+ +EE F KTL+ GI+ + L L GK AF+LY
Sbjct: 361 GDVFPEVKKNEKRITEIIAEEELSFGKTLEKGIEKFKKALAAAKANGGPVLSGKDAFLLY 420
Query: 401 DTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQR---NNARLNSKFKDIKL 448
DTYGFP+DLT + +E V+ + F ME+ R A L + I+L
Sbjct: 421 DTYGFPVDLTELMAEERGVTVDMEGFEAAMEEARERSRAAHLKAGGGAIEL 471
>gnl|CDD|232931 TIGR00344, alaS, alanine--tRNA ligase. The model describes
alanine--tRNA ligase. This enzyme catalyzes the reaction
(tRNAala + L-alanine + ATP = L-alanyl-tRNAala +
pyrophosphate + AMP) [Protein synthesis, tRNA
aminoacylation].
Length = 851
Score = 522 bits (1347), Expect = e-179
Identities = 227/463 (49%), Positives = 291/463 (62%), Gaps = 36/463 (7%)
Query: 5 EICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQ 64
EI FL FFK KGH ++PS+SL+P ND +LL TN+GM QFK +F GI K R + Q
Sbjct: 1 EIRQTFLDFFKEKGHQVIPSASLVPRNDPTLLLTNAGMAQFKPIFTGIVKPPSNRLVNAQ 60
Query: 65 RCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERL 124
C+R ND+ENVG T HHTFF+MLGN+SFGDYFK E++ + WELLT + GL ERL
Sbjct: 61 PCIRL----NDIENVGRTARHHTFFEMLGNFSFGDYFKEEAIAFAWELLTSVLGLDKERL 116
Query: 125 WITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFY 184
++TVY D+E Y IW K G+P ER+IR GDK DNFW M D GPCGPC+EI+Y
Sbjct: 117 YVTVYEDDEEAYEIW-EKHGIPAERIIRCGDK--------DNFWDMGD-GPCGPCTEIYY 166
Query: 185 DCGSTFHGNPPGSKENF--GNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMG 242
D G G PG E F +RY+E+WN VFMQFN++ + G+ T LPK +DTGMG
Sbjct: 167 DRGEFVGG-KPGEPEFFEENDRYVEVWNLVFMQFNRDPD---GN--YTPLPKKNIDTGMG 220
Query: 243 LERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNN-------------SLKVIADH 289
LER ++LQ V NY+TD+F LI+ T NN SL+VIADH
Sbjct: 221 LERFVAVLQGVPTNYDTDIFLPLIEKIEEITGVKYDSNNAGIMDEKRVEDLRSLRVIADH 280
Query: 290 IRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYK 349
RA F++ DGV P NEGRGYVLRR+IRRA+R+G KLG FLYKLV LI Y
Sbjct: 281 TRALAFMLADGVVPSNEGRGYVLRRLIRRALRHGKKLGLKEAFLYKLVPTLIEVLGDYYP 340
Query: 350 ELKISVIKIEEILKKEEECFRKTLKYGIKILENIL-LTKPDKLDGKLAFILYDTYGFPID 408
ELK +E+IL+ EEE F KTL+ G+++ E +L +LDG+ AF LYDTYGFP++
Sbjct: 341 ELKEKQEFVEQILELEEERFAKTLERGLRLFEKLLKKLGKKELDGEDAFKLYDTYGFPVE 400
Query: 409 LTIDICKEHNVSFNKNDFILEMEKQRNNARLNSKFKDIKLNII 451
LT +I +E ++ + F M +QR ++ S+ +L I
Sbjct: 401 LTKEIAEERGLTVDIPGFETLMAEQRERSKAASQTISFELQEI 443
>gnl|CDD|238360 cd00673, AlaRS_core, Alanyl-tRNA synthetase (AlaRS) class II core
catalytic domain. AlaRS is a homodimer. It is
responsible for the attachment of alanine to the 3' OH
group of ribose of the appropriate tRNA. This domain is
primarily responsible for ATP-dependent formation of the
enzyme bound aminoacyl-adenylate. Class II assignment is
based upon its predicted structure and the presence of
three characteristic sequence motifs.
Length = 232
Score = 343 bits (883), Expect = e-118
Identities = 126/249 (50%), Positives = 158/249 (63%), Gaps = 19/249 (7%)
Query: 5 EICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSIQ 64
EI FLSFF+ KGHT VPSS ++P +D +LLFTN+GM QFK +FLG R + Q
Sbjct: 3 EIRETFLSFFEKKGHTRVPSSPVVPRDDPTLLFTNAGMNQFKPIFLGEVPPPANRLVNSQ 62
Query: 65 RCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERL 124
+C+RAG N VG T HHTFF+MLGN+SFGDYFK E++ + WELLT++ GL +RL
Sbjct: 63 KCIRAGDIDN----VGKTGRHHTFFEMLGNFSFGDYFKEEAIAFAWELLTEVLGLPKDRL 118
Query: 125 WITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFY 184
+++V+ DDE IW KIG+P R+ RIG K DNFW+M GPCGPCSEIFY
Sbjct: 119 YVSVFEGDDEEEAIWWWKIGLPGIRIERIGFK--------DNFWEMGGNGPCGPCSEIFY 170
Query: 185 DCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTGMGLE 244
D G + +RY+EIWN VFMQ+N++ LPK VDTGMGLE
Sbjct: 171 DRGEER--DAASLPNEDDDRYLEIWNLVFMQYNRD-----ADGTYRPLPKKIVDTGMGLE 223
Query: 245 RLASILQNV 253
RL +LQ V
Sbjct: 224 RLVWVLQGV 232
>gnl|CDD|234962 PRK01584, PRK01584, alanyl-tRNA synthetase; Provisional.
Length = 594
Score = 353 bits (907), Expect = e-116
Identities = 176/465 (37%), Positives = 262/465 (56%), Gaps = 43/465 (9%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
M E+ K++ FFKSKGH + SLIP+ND ++LFT +GM LG + R
Sbjct: 1 MTLDELRKKYIDFFKSKGHVEIAGKSLIPENDPTVLFTTAGMHPLVPYLLGEPHPSGTRL 60
Query: 61 TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLT--QIYG 118
+Q+CLR G D++ VG H TFF+MLGNWS G YFK ES+++++E LT
Sbjct: 61 VDVQKCLRTG----DIDEVG-DLSHLTFFEMLGNWSLGAYFKEESIKYSFEFLTSPDYLN 115
Query: 119 LSIERLWITVYITDD------ETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFW-QMS 171
+ ++L++TV+ D+ ET ++W +G+PK+R+ + N+W +
Sbjct: 116 IPKDKLYVTVFEGDEEIPRDEETASVW-ESLGIPKDRIFYLS--------REHNWWGPVG 166
Query: 172 DTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTK 231
+TGPCGP +EIF D G + G +Y EIWNNVFMQ+NK+ + G+ + +
Sbjct: 167 ETGPCGPDTEIFVDTGKPKCSVNCRPTCSCG-KYFEIWNNVFMQYNKDED---GNYE--E 220
Query: 232 LPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKA----AARETNCNNLKNNSLKVIA 287
L + CVDTGMG+ER + LQ + Y+T+ F +IK + + N + S+++IA
Sbjct: 221 LKRKCVDTGMGIERTIAFLQGKSSVYDTEAFTPIIKRIEKISGKIYGQNEEDDRSIRIIA 280
Query: 288 DHIRACVFLIID--GVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTY 345
DHIRA F++ D V P N G+GYVLRR+IRR+IR+ KLG S FL LV +
Sbjct: 281 DHIRAACFILGDPFVVLPSNVGQGYVLRRLIRRSIRHAKKLGIESHFLADLVDSVEEIYG 340
Query: 346 IIYKELKISVIKIEEILKKEEECFRKTLKYG----IKILENILLTKPDKLDGKLAFILYD 401
Y EL I+E L KEEE F KTL+ G IK++ N+ +K + G +AF LYD
Sbjct: 341 SFYPELTEKKDFIKEELNKEEEKFFKTLRKGEQEFIKLIPNLGSSK--IIPGDIAFKLYD 398
Query: 402 TYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNS--KFK 444
TYGFP ++T ++ E+ + ++ F +K + ++ + FK
Sbjct: 399 TYGFPYEITEELASEYGFTVDREGFDEHFKKHQKVSKKGADKVFK 443
>gnl|CDD|234309 TIGR03683, A-tRNA_syn_arch, alanyl-tRNA synthetase. This family of
alanyl-tRNA synthetases is limited to the archaea, and
is a subset of those sequences identified by the model
pfam07973 covering the second additional domain (SAD) of
alanyl and threonyl tRNA synthetases.
Length = 902
Score = 122 bits (307), Expect = 1e-29
Identities = 120/474 (25%), Positives = 187/474 (39%), Gaps = 124/474 (26%)
Query: 5 EICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKD-VFLGIEK--RNYLRAT 61
E+ FLSFF+ GHT + ++ + T + + F+ V G+ N L
Sbjct: 60 EMREAFLSFFEKHGHTRIKRYPVVARWRDDVYLTIASIADFQPWVTSGLVPPPANPL--V 117
Query: 62 SIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGD-----YFKYESLQWTWELLTQI 116
Q C+R ND++NVG T H T F+M+ + +F Y+K E++++ +E L
Sbjct: 118 ISQPCIRL----NDIDNVGRTGRHLTCFEMMAHHAFNYPDKEIYWKDETVEYCFEFL--- 170
Query: 117 YGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPC 176
++G+ E + K SP W+ G
Sbjct: 171 ------------------------EELGIDPEEITY----KESP-------WE--GGGNA 193
Query: 177 GPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIK---LTKLP 233
GPC E+ G +E+ VFMQ+ +E IK +++P
Sbjct: 194 GPCFEVIV------GG-------------LELATLVFMQY-EEDKEGEIEIKGGRYSEMP 233
Query: 234 KYCVDTGMGLERLASILQ---NVYNNYETDLFKTLIKAAARETNCNN-LKNNS------- 282
VDTG GLER Q Y+ ++ L + A E L N+
Sbjct: 234 LKIVDTGYGLERFVWASQGTPTAYDAIFPEIVDKLKENAGVELIDEEILAENARLAGMMD 293
Query: 283 ----------------------------------LKVIADHIRACVFLIIDGVFPGNEGR 308
+ IADH R F++ DG+ P N
Sbjct: 294 IEDEEDLRELRKKVADKIGIDVEELEKIIAPVERIYAIADHTRCLAFMLGDGIVPSNVKE 353
Query: 309 GYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEEC 368
GY+ R +IRR +R +LG + I L LV+ + IY ELK + I +IL EEE
Sbjct: 354 GYLARLVIRRTLRLMRELGLD-IPLSDLVEMQLEELKKIYPELKENKDYILDILDLEEEK 412
Query: 369 FRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFN 422
+R+TL+ G +I+E +L TK ++ LYD++G P ++ +I E
Sbjct: 413 YRETLERGRRIVERLLKTK-KEIPLDDLIELYDSHGIPPEIVKEIAAELGAEVE 465
>gnl|CDD|237551 PRK13902, alaS, alanyl-tRNA synthetase; Provisional.
Length = 900
Score = 114 bits (289), Expect = 2e-27
Identities = 125/476 (26%), Positives = 188/476 (39%), Gaps = 141/476 (29%)
Query: 5 EICNKFLSFFKSKGHTIVPSSSLIPD--NDSSLLFTNSGMVQFKD-VFLGIEK--RNYLR 59
E+ KFLSFF+ GHT + ++ +D + T + + F+ V G+ N L
Sbjct: 63 EMREKFLSFFEKHGHTRIERYPVVARWRDD--VYLTIASIYDFQPWVTSGLVPPPANPL- 119
Query: 60 ATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFG--DYFKYESLQWTWELLTQIY 117
Q C+R ND++NVG T H T F+M+ + +F D Y
Sbjct: 120 -VISQPCIRL----NDIDNVGRTGRHLTSFEMMAHHAFNYPDKEVY-------------- 160
Query: 118 GLSIERLWITVYITDDET----YNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDT 173
W DET + +T ++G+ E + K S W
Sbjct: 161 -------WK------DETVEYCFEFFTKELGIDPEEITF----KESW-------W--EGG 194
Query: 174 GPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLP 233
G GPC E+ G +E+ VFMQ+ K+ N + ++P
Sbjct: 195 GNAGPCFEVLV------RG-------------LELATLVFMQYKKDGN------RYVEMP 229
Query: 234 KYCVDTGMGLERLASILQ---NVYN--------------NYETDLFKTLIKAA------- 269
VDTG GLER+A Q Y+ E + L +AA
Sbjct: 230 LKIVDTGYGLERIAWASQGTPTAYDAIFGELVDKLKENAGVEEPDEEILAEAARLAGLMD 289
Query: 270 ---------ARETNCNNL------------KNNSLKVIADHIRACVFLIIDGVFPGNEGR 308
R+ L ++ IADH R F++ DG+ P N G
Sbjct: 290 IEEIEDLRSLRQKVAKKLGIDVEELEELLEPLEAIYAIADHTRTLAFMLGDGIVPSNVGE 349
Query: 309 GYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEEC 368
GY+ R +IRR +R +LG + L +LV I Y ELK + I +I+ EEE
Sbjct: 350 GYLARLVIRRTLRLLDELG-LDVPLSELVDMQIDELKEDYPELKENRDYILDIVDLEEEK 408
Query: 369 FRKTLKYGIKILENILLTK----PDKLDGKLAFI-LYDTYGFPIDLTIDICKEHNV 419
+R+TL+ G +I+E + K D L I LYD++G P ++ +I K+ V
Sbjct: 409 YRETLERGKRIVERLAKKKEEIPLDDL------IELYDSHGIPPEIVKEIAKKKGV 458
>gnl|CDD|238391 cd00768, class_II_aaRS-like_core, Class II tRNA amino-acyl
synthetase-like catalytic core domain. Class II amino
acyl-tRNA synthetases (aaRS) share a common fold and
generally attach an amino acid to the 3' OH of ribose of
the appropriate tRNA. PheRS is an exception in that it
attaches the amino acid at the 2'-OH group, like class I
aaRSs. These enzymes are usually homodimers. This domain
is primarily responsible for ATP-dependent formation of
the enzyme bound aminoacyl-adenylate. The substrate
specificity of this reaction is further determined by
additional domains. Intererestingly, this domain is also
found is asparagine synthase A (AsnA), in the accessory
subunit of mitochondrial polymerase gamma and in the
bacterial ATP phosphoribosyltransferase regulatory
subunit HisZ.
Length = 211
Score = 42.1 bits (99), Expect = 2e-04
Identities = 47/265 (17%), Positives = 64/265 (24%), Gaps = 80/265 (30%)
Query: 5 EICNKFLSFFKSKGHTIV--PSSSLIPDNDSSLLFT---------NSGMVQFKDVFLGIE 53
+I K F G V P P + + N + +
Sbjct: 4 KIEQKLRRFMAELGFQEVETPIVEREPLLEKAGHEPKDLLPVGAENEEDLYLRPTLEPGL 63
Query: 54 KRNY--------LRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYES 105
R + LR I R G L F L FG+ + S
Sbjct: 64 VRLFVSHIRKLPLRLAEIGPAFRNEGGRRGL-------RRVREFTQLEGEVFGEDGEEAS 116
Query: 106 LQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSD 165
E L + I D V T
Sbjct: 117 ----EFEELIEL---TEELLRALGIKLD---------------IVFVEK--------TPG 146
Query: 166 NFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTG 225
F G GP EI D +P G R +EI + + Q +
Sbjct: 147 EFS----PGGAGPGFEIEVD-------HPEG-------RGLEIGSGGYRQDEQAR--AAD 186
Query: 226 SIKLTKLPKYCVDT----GMGLERL 246
L + +Y G+GLERL
Sbjct: 187 LYFLDEALEYRYPPTIGFGLGLERL 211
>gnl|CDD|224557 COG1643, HrpA, HrpA-like helicases [DNA replication, recombination,
and repair].
Length = 845
Score = 35.4 bits (82), Expect = 0.061
Identities = 11/32 (34%), Positives = 19/32 (59%)
Query: 220 INPKTGSIKLTKLPKYCVDTGMGLERLASILQ 251
I +TGS K T+LP++ ++ G+G+ Q
Sbjct: 70 IVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQ 101
>gnl|CDD|191441 pfam06073, DUF934, Bacterial protein of unknown function (DUF934).
This family consists of several bacterial proteins of
unknown function. One of the members of this family,
BMEI1764, is thought to be an oxidoreductase.
Length = 110
Score = 31.0 bits (71), Expect = 0.40
Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 3/30 (10%)
Query: 297 IIDGVFPG-NEGRGYVLRRIIRRAIRYGYK 325
+I FP +GRGY R++R RYGYK
Sbjct: 22 LIALDFPAFTDGRGYSQARLLRE--RYGYK 49
>gnl|CDD|223134 COG0056, AtpA, F0F1-type ATP synthase, alpha subunit [Energy
production and conversion].
Length = 504
Score = 30.2 bits (69), Expect = 2.3
Identities = 11/46 (23%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 356 IKIEEILKKEEECFRKTLKYGIKILENILLTK--PDKLDGKLAFIL 399
+ +E++ E+E ++LE I TK D+++ KL +
Sbjct: 448 VPVEKVADFEKELLAYLRSDHKELLEEIRTTKELDDEIEAKLKAAI 493
>gnl|CDD|217184 pfam02684, LpxB, Lipid-A-disaccharide synthetase. This is a family
of lipid-A-disaccharide synthetases, EC:2.4.2.128. These
enzymes catalyze the reaction:
UDP-2,3-bis(3-hydroxytetradecanoyl) glucosamine +
2,3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl
1-phosphate <=> UDP +
2,3-bis(3-hydroxytetradecanoyl)-D-glucosaminyl-1,6
-beta-D-2,
3-bis(3-hydroxytetradecanoyl)-beta-D-glucosaminyl
1-phosphate. These enzymes catalyze the fist
disaccharide step in the synthesis of
lipid-A-disaccharide.
Length = 373
Score = 30.1 bits (68), Expect = 2.8
Identities = 22/64 (34%), Positives = 31/64 (48%), Gaps = 10/64 (15%)
Query: 352 KISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYGFPIDLTI 411
+ISV+ E+L + K LK K+++NIL KPD L IL D F + L
Sbjct: 51 EISVMGFIEVLGR----LFKLLKIYQKVVKNILKKKPDTL------ILIDAPDFNLRLAK 100
Query: 412 DICK 415
+ K
Sbjct: 101 KLRK 104
>gnl|CDD|221018 pfam11186, DUF2972, Protein of unknown function (DUF2972). Some
members in this family of proteins with unknown function
are annotated as sugar transferase proteins, however
this cannot be confirmed.
Length = 197
Score = 29.2 bits (66), Expect = 3.2
Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
Query: 334 YKLVKDLIFNTYIIYKELKISVIKIE-EILKKEEECFRKTLKYGIKILENI 383
Y + +FN I + I + K + EILK++E+ F+K KY K +E +
Sbjct: 80 YIDITKELFNKNDILDNIIICIKKEDFEILKQDEKLFKKIKKYLKKFIEAL 130
>gnl|CDD|226711 COG4260, COG4260, Membrane protease subunit, stomatin/prohibitin
family [Amino acid transport and metabolism].
Length = 345
Score = 29.5 bits (66), Expect = 3.5
Identities = 8/35 (22%), Positives = 15/35 (42%), Gaps = 2/35 (5%)
Query: 169 QMSDTGPCGPCSEIFY--DCGSTFHGNPPGSKENF 201
+ T PC C+++ + +CG + K F
Sbjct: 302 APAATWPCARCAKLNFCLNCGCGTTADFDNGKAKF 336
>gnl|CDD|236473 PRK09348, glyQ, glycyl-tRNA synthetase subunit alpha; Validated.
Length = 283
Score = 29.3 bits (67), Expect = 4.0
Identities = 11/17 (64%), Positives = 12/17 (70%)
Query: 242 GLERLASILQNVYNNYE 258
GLERLA LQ V N Y+
Sbjct: 163 GLERLAMYLQGVDNVYD 179
>gnl|CDD|182070 PRK09776, PRK09776, putative diguanylate cyclase; Provisional.
Length = 1092
Score = 29.6 bits (67), Expect = 4.3
Identities = 16/60 (26%), Positives = 22/60 (36%), Gaps = 20/60 (33%)
Query: 122 ERLWITVY------ITDDETYNI------------WTNK--IGVPKERVIRIGDKKNSPL 161
ERL IT+ + D + WT + +GVP V+ I N PL
Sbjct: 536 ERLHITLDSIGEAVVCTDMAMKVTFMNPVAEKMTGWTQEEALGVPLLTVLHITFGDNGPL 595
>gnl|CDD|233659 TIGR01967, DEAH_box_HrpA, ATP-dependent helicase HrpA. This model
represents HrpA, one of two related but uncharacterized
DEAH-box ATP-dependent helicases in many Proteobacteria
and a few high-GC Gram-positive bacteria. HrpA is about
1300 amino acids long, while its paralog HrpB, also
uncharacterized, is about 800 amino acids long. Related
characterized eukarotic proteins are RNA helicases
associated with pre-mRNA processing [Unknown function,
Enzymes of unknown specificity].
Length = 1283
Score = 29.7 bits (67), Expect = 4.4
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 220 INPKTGSIKLTKLPKYCVDTGMG 242
I +TGS K T+LPK C++ G G
Sbjct: 87 IAGETGSGKTTQLPKICLELGRG 109
>gnl|CDD|215060 PLN00112, PLN00112, malate dehydrogenase (NADP); Provisional.
Length = 444
Score = 29.0 bits (65), Expect = 5.1
Identities = 11/35 (31%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 334 YKLVKDLIFNTYIIYKELKISVIKIEEILKKEEEC 368
Y++VKD+ + Y + + +K K E L E+ C
Sbjct: 390 YEIVKDVEIDDY-LRERIK----KSEAELLAEKRC 419
>gnl|CDD|143988 pfam00237, Ribosomal_L22, Ribosomal protein L22p/L17e. This family
includes L22 from prokaryotes and chloroplasts and L17
from eukaryotes.
Length = 105
Score = 27.4 bits (62), Expect = 6.3
Identities = 18/80 (22%), Positives = 27/80 (33%), Gaps = 16/80 (20%)
Query: 240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIID 299
G +E +IL+ V + K L A A N L ++L + I
Sbjct: 22 GKSVEEALAILEFVPKKAAKIILKLLKSAVANAENNKGLDPDNLYI--KEIFV------- 72
Query: 300 GVFPGNEGRGYVLRRIIRRA 319
+G L+R RA
Sbjct: 73 -------DKGPTLKRFRPRA 85
>gnl|CDD|176724 cd08308, Death_Tube, Death domain of Tube. Death domains (DDs)
similar to the DD in the protein Tube from Drosophila
melanogaster. In Drosophila, interaction between the DDs
of Tube and Pelle is an important component of the Toll
pathway, which functions in establishing dorsoventral
polarity in embryos and also in mediating innate immune
response to pathogens. Tube and Pelle transmit the
signal from the Toll receptor to the Dorsal/Cactus
complex. Some members of this subfamily contain a
C-terminal kinase domain, like Pelle, in addition to the
DD. Tube has no counterpart in vertebrates. It contains
an N-terminal DD and a C-terminal region with five
copies of the Tube repeat, an 8-amino acid motif. DDs
are protein-protein interaction domains found in a
variety of domain architectures. Their common feature is
that they form homodimers by self-association or
heterodimers by associating with other members of the DD
superfamily including CARD (Caspase activation and
recruitment domain), DED (Death Effector Domain), and
PYRIN. They serve as adaptors in signaling pathways and
can recruit other proteins into signaling complexes.
Length = 125
Score = 27.7 bits (62), Expect = 6.9
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 152 RIGDKKNSPLYTSDNFWQMSDTG--PCGPCSEIFYDCGST 189
D N Y +++F + CSEI D T
Sbjct: 35 DDDDFNNLAKYNAEHFKLIEQAANKQRRSCSEILLDEWGT 74
>gnl|CDD|223823 COG0752, GlyQ, Glycyl-tRNA synthetase, alpha subunit [Translation,
ribosomal structure and biogenesis].
Length = 298
Score = 28.0 bits (63), Expect = 9.0
Identities = 10/17 (58%), Positives = 12/17 (70%)
Query: 242 GLERLASILQNVYNNYE 258
GLERLA +Q V N Y+
Sbjct: 164 GLERLAMYIQGVDNVYD 180
>gnl|CDD|213339 cd05137, RasGAP_CLA2_BUD2, Ras-GTPase Activating Domain of
CLA2/BUD2. CLA2/BUD2 functions as a GTPase-activating
protein (GAP) for BUD1/RSR1 and is necessary for proper
bud-site selection in yeast. BUD2 has sequence
similarity to the catalytic domain of RasGAPs, and
stimulates the hydrolysis of BUD1-GTP to BUD1-GDP.
Elimination of Bud2p activity by mutation causes a
random budding pattern with no growth defect.
Overproduction of Bud2p also alters the budding pattern.
Length = 356
Score = 28.3 bits (64), Expect = 9.1
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 8/65 (12%)
Query: 231 KLPKYCVDT--GMGLERLASILQNVY--NNYETDLFKTLIKA----AARETNCNNLKNNS 282
L + G LERL+ IL +++ + E + F L++ + T+ N S
Sbjct: 28 GLTLQIAELVPGDKLERLSEILLDIFQASGREDEWFMALVEDEIDGIDKSTSKNKDMGKS 87
Query: 283 LKVIA 287
A
Sbjct: 88 SNNEA 92
>gnl|CDD|232886 TIGR00231, small_GTP, small GTP-binding protein domain. Proteins
with a small GTP-binding domain recognized by this model
include Ras, RhoA, Rab11, translation elongation factor
G, translation initiation factor IF-2, tetratcycline
resistance protein TetM, CDC42, Era, ADP-ribosylation
factors, tdhF, and many others. In some proteins the
domain occurs more than once.This model recognizes a
large number of small GTP-binding proteins and related
domains in larger proteins. Note that the alpha chains
of heterotrimeric G proteins are larger proteins in
which the NKXD motif is separated from the GxxxxGK[ST]
motif (P-loop) by a long insert and are not easily
detected by this model [Unknown function, General].
Length = 162
Score = 27.7 bits (62), Expect = 9.1
Identities = 18/62 (29%), Positives = 32/62 (51%), Gaps = 6/62 (9%)
Query: 350 ELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPD----KLDGKLAFILYDTYGF 405
++ I V+ +EEIL+K+ + + G+ I+ ++ K D KL +AF+ G
Sbjct: 83 DIVILVLDVEEILEKQTKEIIHHAESGVPII--LVGNKIDLRDAKLKTHVAFLFAKLNGE 140
Query: 406 PI 407
PI
Sbjct: 141 PI 142
>gnl|CDD|223933 COG1001, AdeC, Adenine deaminase [Nucleotide transport and
metabolism].
Length = 584
Score = 28.4 bits (64), Expect = 9.5
Identities = 11/30 (36%), Positives = 14/30 (46%)
Query: 294 VFLIIDGVFPGNEGRGYVLRRIIRRAIRYG 323
V L D P + L R++RRAI G
Sbjct: 273 VMLCTDDRHPDDLLEEGHLDRLVRRAIEEG 302
>gnl|CDD|182986 PRK11131, PRK11131, ATP-dependent RNA helicase HrpA; Provisional.
Length = 1294
Score = 28.5 bits (64), Expect = 9.8
Identities = 11/19 (57%), Positives = 14/19 (73%)
Query: 224 TGSIKLTKLPKYCVDTGMG 242
TGS K T+LPK C++ G G
Sbjct: 98 TGSGKTTQLPKICLELGRG 116
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.140 0.428
Gapped
Lambda K H
0.267 0.0674 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,389,642
Number of extensions: 2343486
Number of successful extensions: 2339
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2272
Number of HSP's successfully gapped: 56
Length of query: 451
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 351
Effective length of database: 6,502,202
Effective search space: 2282272902
Effective search space used: 2282272902
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.4 bits)