RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13352
(451 letters)
>3hy0_A Alanyl-tRNA synthetase; aminoacyl-tRNA synthetase, ligase, protein
biosynthesis, NUC binding, amino acid-binding,
ATP-binding, metal-binding; HET: G5A EPE; 1.90A
{Escherichia coli} PDB: 3hxz_A* 3hy1_A* 3hxv_A* 3hxu_A*
3hxw_A* 3hxx_A* 3hxy_A*
Length = 441
Score = 740 bits (1912), Expect = 0.0
Identities = 260/446 (58%), Positives = 324/446 (72%), Gaps = 9/446 (2%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
+ EI FL FF SKGH +V SSSL+P ND +LLFTN+GM QFKDVFLG++KRNY RA
Sbjct: 2 KSTAEIRQAFLDFFHSKGHQVVASSSLVPHNDPTLLFTNAGMNQFKDVFLGLDKRNYSRA 61
Query: 61 TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLT--QIYG 118
T+ QRC+RAGGKHNDLENVGYT HHTFF+MLGN+SFGDYFK +++ + W LLT + +
Sbjct: 62 TTSQRCVRAGGKHNDLENVGYTARHHTFFEMLGNFSFGDYFKLDAILFAWLLLTSEKWFA 121
Query: 119 LSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGP 178
L ERLW+TVY +DDE Y IW ++G+P+ER+IRIGD K +P Y SDNFWQM DTGPCGP
Sbjct: 122 LPKERLWVTVYESDDEAYEIWEKEVGIPRERIIRIGDNKGAP-YASDNFWQMGDTGPCGP 180
Query: 179 CSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVD 238
C+EIFYD G G PPGS E G+RYIEIWN VFMQFN++ + G + LPK VD
Sbjct: 181 CTEIFYDHGDHIWGGPPGSPEEDGDRYIEIWNIVFMQFNRQAD---G--TMEPLPKPSVD 235
Query: 239 TGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLII 298
T MGLER+A++LQ+V +NY+ DLF+TLI+A A+ T +L N SL+VIADHIR+C FLI
Sbjct: 236 TAMGLERIAAVLQHVNSNYDIDLFRTLIQAVAKVTGATDLSNKSLRVIADHIRSCAFLIA 295
Query: 299 DGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKI 358
DGV P NE RGYVLRRIIRRA+R+G LG F YKLV LI ++LK ++
Sbjct: 296 DGVMPSNENRGYVLRRIIRRAVRHGNMLGAKETFFYKLVGPLIDVMGSAGEDLKRQQAQV 355
Query: 359 EEILKKEEECFRKTLKYGIKILENILL-TKPDKLDGKLAFILYDTYGFPIDLTIDICKEH 417
E++LK EEE F +TL+ G+ +L+ L D LDG+ AF LYDTYGFP+DLT D+C+E
Sbjct: 356 EQVLKTEEEQFARTLERGLALLDEELAKLSGDTLDGETAFRLYDTYGFPVDLTADVCRER 415
Query: 418 NVSFNKNDFILEMEKQRNNARLNSKF 443
N+ ++ F ME+QR AR S F
Sbjct: 416 NIKVDEAGFEAAMEEQRRRAREASGF 441
>1yfs_A Alanyl-tRNA synthetase; alpha-beta fold, helix-loop-helix motif,
amino acid binding, ligase; 2.08A {Aquifex aeolicus}
SCOP: a.203.1.1 d.104.1.1 PDB: 1yfr_A* 1riq_A 1yft_A
1ygb_A 3htz_A
Length = 465
Score = 705 bits (1821), Expect = 0.0
Identities = 216/452 (47%), Positives = 296/452 (65%), Gaps = 30/452 (6%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
+ + EI FLSFF+ KGHT V S+ L+P+ND +LLF N+GMV FK+VFLG+EKR Y RA
Sbjct: 3 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRA 62
Query: 61 TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
TS Q+CLR GKHNDLE VGYT+ HHTFF+MLGN+SFGDYFK E++++ WE +T++ L
Sbjct: 63 TSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLP 122
Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
E+L+++VY D+E Y IW IG+P ER+ R+G++ DNFWQM D GPCGP S
Sbjct: 123 KEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE--------DNFWQMGDVGPCGPSS 174
Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
EI+ D G + G RY+EIWN VFMQ+N++ + G LT LP +DTG
Sbjct: 175 EIYVDRGEEYEG---------DERYLEIWNLVFMQYNRD---ENGV--LTPLPHPNIDTG 220
Query: 241 MGLERLASILQNVYNNYETDLFKTLIKAAARETNC----NNLKNNSLKVIADHIRACVFL 296
MGLER+AS+LQ +N+E D+ LI+ + + +L+VIADH+RA F
Sbjct: 221 MGLERIASVLQGKNSNFEIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFA 280
Query: 297 IIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVI 356
I DGV P NEGRGYV+RRI+RRA+R+GYKLG + FLYK V ++ Y EL++S
Sbjct: 281 ISDGVIPSNEGRGYVIRRILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSRE 340
Query: 357 KIEEILKKEEECFRKTLKYGIKILENILLTKPDK----LDGKLAFILYDTYGFPIDLTID 412
++ I+K EE+ F KTLK G++ ++ ++ ++ L GK F YDTYGFP+DL +
Sbjct: 341 FVKGIVKGEEKRFIKTLKAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDE 400
Query: 413 ICKEHNVSFNKNDFILEMEKQRNNARLNSKFK 444
I +E + + F E+E+QR AR + K +
Sbjct: 401 IAREKGLGIDLEGFQCELEEQRERARKHFKVE 432
>2ztg_A Alanyl-tRNA synthetase; class-II aminoacyl-tRNA synthetase,
aminoacyl-tRNA synthetase, ATP-binding, cytoplasm,
ligase; HET: A5A; 2.20A {Archaeoglobus fulgidus}
Length = 739
Score = 528 bits (1363), Expect = 0.0
Identities = 99/489 (20%), Positives = 182/489 (37%), Gaps = 99/489 (20%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFL-GIEKRNYLR 59
+ E+ +L+FF+ +GH + ++ + + T + + F+ G+
Sbjct: 60 FELDEMREYYLNFFERRGHGRIERYPVVARWRTDIYLTIASIADFQPFVTSGVAPPPANP 119
Query: 60 ATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGD-----YFKYESLQWTWELLT 114
T Q C+R +DL++VG T H T F+M+ + +F Y+K E++ + ELL
Sbjct: 120 LTISQPCIRL----DDLDSVGRTGRHLTLFEMMAHHAFNYPGKEIYWKNETVAYCTELLN 175
Query: 115 QIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTG 174
++GV KE ++ + W G
Sbjct: 176 ---------------------------ELGVKKEDIVYK-----------EEPWAGG--G 195
Query: 175 PCGPCSEIFYDCG-------STFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSI 227
GPC E +P G E G RY ++ N +
Sbjct: 196 NAGPCLEAIVGGLEVATLVFMNLEEHPEGDIEIKGARYRKMDNYIVDTGY-----GLERF 250
Query: 228 KLTKLPKYCVDTGMGLERLASILQ--NVYNNYETDLFKTLIKAAARETNCNNLKNN---- 281
V + E + +I+ NV N E + + ++ +++
Sbjct: 251 VWASKGTPTVYDAIFPEVVDTIIDNSNVSFNREDERVRRIVAESSKLAGIMGELRGERLN 310
Query: 282 -------------------------SLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRII 316
+ +ADH R +F++ DG+ P N G GY+ R +I
Sbjct: 311 QLRKSVADTVGVSVEELEGIVVPLEKVYSLADHTRCILFMLGDGLVPSNAGAGYLARLMI 370
Query: 317 RRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYG 376
RR++R +L + LY LV+ + + ++EIL+ E+E +R T+ G
Sbjct: 371 RRSLRLAEELELG-LDLYDLVEMHKKILGFEFDVPLST---VQEILELEKERYRTTVSKG 426
Query: 377 IKILENILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKND-FILEMEKQRN 435
+++E L+ + KL+ LYD++G P++L + I E E+ K+ +
Sbjct: 427 TRLVER-LVERKKKLEKDDLIELYDSHGIPVELAVGIAAEKGAEVEMPKDIYAELAKRHS 485
Query: 436 NARLNSKFK 444
A + K
Sbjct: 486 KAEKVQEKK 494
>2zze_A Alanyl-tRNA synthetase; ligase, hydrolase; HET: MLY; 2.16A
{Pyrococcus horikoshii} PDB: 2zzf_A 2zzg_A*
Length = 752
Score = 349 bits (896), Expect = e-113
Identities = 94/517 (18%), Positives = 180/517 (34%), Gaps = 129/517 (24%)
Query: 1 MKSIEICNKFLSFFKSKG---HTIVPSSSLIPDNDSSLLFTNSGMVQFKD-VFLGIEKRN 56
E+ FL FF+ H V ++P +L + ++ F+ V G
Sbjct: 57 YTLDEMREXFLRFFEXHEIYPHGRVXRYPVLPRWRDDVLLVGASIMDFQPWVISGEADPP 116
Query: 57 YLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGD-----YFKYESLQWTWE 111
Q +R D++NVG T H T F+M+ + +F Y+ E+++ +E
Sbjct: 117 ANPLVISQPSIR----FTDIDNVGITGRHFTIFEMMAHHAFNYPGXPIYWMDETVELAFE 172
Query: 112 LLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMS 171
T+ + E + +N W
Sbjct: 173 FFTKELXMXPEDIT-------------------------------------FKENPWAGG 195
Query: 172 DTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQF-------NKEINPKT 224
G GP E+ Y R +E+ VFMQ+ ++
Sbjct: 196 --GNAGPAFEVLY-------------------RGLEVATLVFMQYXXAPENAPQDQVVVI 234
Query: 225 GSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLF----------------KTLIKA 268
K + VDTG GLERL + Q Y+ L + ++
Sbjct: 235 XGEKYIPMETXVVDTGYGLERLVWMSQGTPTAYDAVLGYVVEPLXXMAGIEKIDEKILME 294
Query: 269 AARETNCNNLKN-----------------------------NSLKVIADHIRACVFLIID 299
+R ++++ + IADH +A F++ D
Sbjct: 295 NSRLAGMFDIEDLGDLRYLREQVAKRVGITVEELEKAIRPYELIYAIADHTKALTFMLAD 354
Query: 300 GVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIE 359
GV P N GY+ R +IR++IR+ +LG L ++V I + + E I
Sbjct: 355 GVVPSNVXAGYLARLLIRKSIRHLRELGLEV-PLSEIVALHIXELHKTFPEFXEMEDIIL 413
Query: 360 EILKKEEECFRKTLKYGIKILENILLTKP----DKLDGKLAFILYDTYGFPIDLTIDICK 415
E+++ EE+ + +TL+ G ++ + ++ + Y+++G ++ +I +
Sbjct: 414 EMIELEEKXYAETLRRGSDLVRREIAKLKKKGIKEIPVEXLVTFYESHGLTPEIVXEIAE 473
Query: 416 EHNVSFN-KNDFILEMEKQRNNARLNSKFKDIKLNII 451
+ V N ++F + K+ + + + ++
Sbjct: 474 KEGVKVNIPDNFYSMVAKEAERTKEEKGEELVDFELL 510
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 50.8 bits (121), Expect = 8e-07
Identities = 82/461 (17%), Positives = 151/461 (32%), Gaps = 166/461 (36%)
Query: 3 SIEICNKFLSF-----------------------FKS---KG---HTIVPSSSLIPDNDS 33
E+ KFL + F++ +G H + + L+ +ND+
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALA--AKLLQENDT 114
Query: 34 SLLFTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHND---LENVGYTNYH-HTFF 89
+L+ + K++ +NY+ A + + R K ++ VG N F
Sbjct: 115 TLV-------KTKELI-----KNYITARIMAK--RPFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 90 --QMLGNWSFGDYFKYESLQWTWE----LLTQIYGLSIERLWITVYITDD------ETYN 137
Q GN DYF+ E L+ ++ L+ + S E L + T D + N
Sbjct: 161 GGQ--GN--TDDYFE-E-LRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN 214
Query: 138 I--W-TNKIGVPKERVIR--------IGDKKNSPLYTSDNFWQMSDTGPCGPCSEIF-YD 185
I W N P + + IG + ++ + P E+ Y
Sbjct: 215 ILEWLENPSNTPDKDYLLSIPISCPLIG------VIQLAHYVVTAKLLGFTP-GELRSYL 267
Query: 186 CGSTFHGN---------PPGSKENF---GNRYIEI--WNNVFMQFNKEINPKTGSIKLTK 231
G+T H S E+F + I + + V E P T S+ +
Sbjct: 268 KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCY---EAYPNT-SLPPSI 323
Query: 232 LPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIR 291
L + ++ G+ + +L ++ ++L + ++ +TN +L I+
Sbjct: 324 L-EDSLENNEGVP--SPML-SI-----SNLTQEQVQDYVNKTNS-HLPAGKQVEIS---- 369
Query: 292 ACVFLIIDGVFPGNEGRGYV-------LRRIIR--RAIRYGYKLGQNSI----------- 331
L+ N + V L + R + L Q+ I
Sbjct: 370 ----LV-------NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSN 418
Query: 332 -FL---------Y------KLVKDLIFNTYIIY-KELKISV 355
FL + KDL+ N K+++I V
Sbjct: 419 RFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPV 459
Score = 48.5 bits (115), Expect = 4e-06
Identities = 66/378 (17%), Positives = 111/378 (29%), Gaps = 130/378 (34%)
Query: 23 PSSSLIPDND---SSLL-FTNSGMVQFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLEN 78
PS++ PD D S + G++Q +Y+ G +L +
Sbjct: 222 PSNT--PDKDYLLSIPISCPLIGVIQLA---------HYVVT-----AKLLGFTPGELRS 265
Query: 79 V--GYTNYHH-----TFFQMLGNW-SFGDYFKYESLQWTWELLTQIYGLSIERLWITVYI 130
G T + +W SF + S++ +L I G+ + +
Sbjct: 266 YLKGATGHSQGLVTAVAIAETDSWESF-----FVSVRKAITVLFFI-GVRCYEAYPNTSL 319
Query: 131 TDDETYNIWTNKIGVP----------KERVIRIGDKKN------SPLYTS-----DNFWQ 169
+ N GVP +E+V +K N + S N
Sbjct: 320 PPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLVNGAKNL-- 377
Query: 170 MSDTGPCGPCSEIFYDCGSTFHGN--PPGS----------KENFGNRYIEI---WNNVFM 214
+GP P S Y T P G K F NR++ + +++ +
Sbjct: 378 -VVSGP--PQS--LYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLL 432
Query: 215 Q-----FNKEINPKTGSIKLTKL--PKYCVDTGMGLERLASILQNVYNNYETDLFKTLIK 267
NK++ S + P Y G S L+ + + + +I+
Sbjct: 433 VPASDLINKDLVKNNVSFNAKDIQIPVYDTFDG-------SDLRVLSGSISERIVDCIIR 485
Query: 268 AAARETNCNNLKNNSLKVIADHIRACVFLIIDGVF-PGN------------EGRGYVLRR 314
+ K A H I+D F PG +G G R
Sbjct: 486 LPVKWETTTQFK-------ATH-------ILD--FGPGGASGLGVLTHRNKDGTGV---R 526
Query: 315 II-------RRAIRYGYK 325
+I YG+K
Sbjct: 527 VIVAGTLDINPDDDYGFK 544
Score = 40.8 bits (95), Expect = 0.001
Identities = 28/166 (16%), Positives = 49/166 (29%), Gaps = 75/166 (45%)
Query: 240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVI---AD-HIRACV- 294
GMG++ +Y + AA++ + AD H +
Sbjct: 1630 GMGMD--------LYKTSK----------AAQD-------------VWNRADNHFKDTYG 1658
Query: 295 FLIIDGV----------FPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNT 344
F I+D V F G +G + IR Y S +++ + D T
Sbjct: 1659 FSILDIVINNPVNLTIHFGGEKG----------KRIRENY-----SAMIFETIVDGKLKT 1703
Query: 345 YIIYKELKISVIKIEEILKKEEECFRKTLKYGIKILEN----ILLT 386
I+KE+ + E+ T + + L
Sbjct: 1704 EKIFKEINEHSTSY--TFRSEKGLLSAT--------QFTQPALTLM 1739
Score = 31.2 bits (70), Expect = 0.88
Identities = 38/218 (17%), Positives = 66/218 (30%), Gaps = 62/218 (28%)
Query: 225 GSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLK 284
GS++ L V T +AS LQ + F ++ ++ +
Sbjct: 14 GSLEHVLL----VPTASFF--IASQLQ--------EQFNKILPEPTEGFAADDEPTTPAE 59
Query: 285 VIADHIRACVFL--IIDGVFPGNEG-RGYVLRRIIRRAIRYGYKLGQNSI--FLYKLVKD 339
++ FL + V P G VL + Y L N I KL+++
Sbjct: 60 LVGK------FLGYVSSLVEPSKVGQFDQVLNLCLTEFEN-CY-LEGNDIHALAAKLLQE 111
Query: 340 LIFNTYIIYKELKISVIKIEEILKKEEECF---RKTLKYGI-KILENILLTKPDKLDGKL 395
+++K +E++K + R K K + L + + +L
Sbjct: 112 N-----------DTTLVKTKELIK----NYITARIMAKRPFDKKSNSALFRAVGEGNAQL 156
Query: 396 AFI----------------LYDTYGFPIDLTIDICKEH 417
I LY TY + I E
Sbjct: 157 VAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAET 194
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 37.9 bits (87), Expect = 0.007
Identities = 71/484 (14%), Positives = 124/484 (25%), Gaps = 156/484 (32%)
Query: 4 IEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRATSI 63
+E+ K L + SS I S+ + E R L++
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI----------QA-----ELRRLLKSKPY 243
Query: 64 QRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWE--------LLT- 114
+ CL L NV + W LLT
Sbjct: 244 ENCLL------VLLNV---------------QN----------AKAWNAFNLSCKILLTT 272
Query: 115 ------------QIYGLSIERLWITVYITDDETYNIWTNKIGV-----PKE------RVI 151
+S++ +T +T DE ++ + P+E R +
Sbjct: 273 RFKQVTDFLSAATTTHISLDHHSMT--LTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRL 330
Query: 152 R-IGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWN 210
I + L T DN W+ + E + P ++ F + +
Sbjct: 331 SIIAESIRDGLATWDN-WKHVNCDKLTTIIESSLN-----VLEPAEYRKMF--DRLSV-- 380
Query: 211 NVFMQFNKEIN--PKTGSIKLTKLPKYCVDTGMGLERLASILQNVYNNYETDLFKTLIKA 268
F + S+ + K V + + L +L++
Sbjct: 381 -----FPPSAHIPTILLSLIWFDVIKSDV------MVVVNKLHK----------YSLVE- 418
Query: 269 AARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIRYGYKLGQ 328
K I+ + E + R I+ Y
Sbjct: 419 ----------KQPKESTISIPSIYLELKV------KLENEYALHRSIVDH---YNIPKTF 459
Query: 329 NSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKT------LKYGIKILEN 382
+S L D F ++I + LK IE + FR L+ I+
Sbjct: 460 DSDDLIPPYLDQYFYSHIGH-HLK----NIEHPERMTL--FRMVFLDFRFLEQKIRHDST 512
Query: 383 ILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILEMEKQRNNARLNSK 442
L+ Y Y IC + IL+ + + SK
Sbjct: 513 AWNASGSILNTLQQLKFYKPY---------ICDNDPKYERLVNAILDFLPKIEENLICSK 563
Query: 443 FKDI 446
+ D+
Sbjct: 564 YTDL 567
Score = 31.0 bits (69), Expect = 0.94
Identities = 54/412 (13%), Positives = 109/412 (26%), Gaps = 110/412 (26%)
Query: 85 HHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDETYNIWTNK-- 142
HH M D F+ Q+ ++ + ++ + D +I + +
Sbjct: 1 HHHHHHM-------D-FETGEHQYQYKDILSVFEDAFVDN-FDCKDVQDMPKSILSKEEI 51
Query: 143 ---IGVP--KERVIRIGD---KKNSPLYT-------SDNF-WQMS-----DTGPCGPCSE 181
I +R+ K + N+ + MS P
Sbjct: 52 DHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRM 111
Query: 182 IFYDCGSTFHGNPPGSKENFGNRYIEIWN--NVFMQFNKE----INPKTGSIK------- 228
++ N +K N +R ++ I+ GS K
Sbjct: 112 YIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDV 170
Query: 229 ------LTKLP--------KYCVDTGMGLERLASILQNVYNNYETDLFKTLIKAAARETN 274
K+ K C LE +LQ + + + ++ +
Sbjct: 171 CLSYKVQCKMDFKIFWLNLKNCNSPETVLE----MLQKLLYQIDPNWTSRSDHSSNIKLR 226
Query: 275 CNNLKN------------NSLKVIAD-----HIRA----CVFLII---DGVFPGNEGRGY 310
++++ N L V+ + A C L+ V +
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT--DFLSAA 284
Query: 311 VLRRIIRRAIRYGYKLGQN-SIFLYKL---VKDLIFNTYIIYKE------LKISVIKIEE 360
I + S+ L L +DL +E ++S+I E
Sbjct: 285 TTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL-------PREVLTTNPRRLSIIA--E 335
Query: 361 ILKKEEECFRKTLKYGIKILENILLTKPDKLDGKLAFILYDTYG-FPIDLTI 411
++ + L I+ + + L+ ++D FP I
Sbjct: 336 SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Score = 27.9 bits (61), Expect = 8.2
Identities = 47/305 (15%), Positives = 84/305 (27%), Gaps = 86/305 (28%)
Query: 2 KSIEICNKFLSFFKSK----GHTIVPSS-SLIPDNDSSLLFTNSGMVQFKDVFLGIEKRN 56
+ + K+L T P S+I ++ L T +K V +K
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWD---NWKHV--NCDKLT 356
Query: 57 YLRATSIQRCLRAGGKHNDLENVGYTNYHHTFF-------------QMLGNWSFGDYFKY 103
T I+ L N LE Y ++ W
Sbjct: 357 ----TIIESSL------NVLEPAEYRKMFDRLSVFPPSAHIPTILLSLI--WFDVIKSDV 404
Query: 104 E---------SL--QWTWELLTQIYGLSIERLWITVYITDDETYNIWTNKIGVPKERVIR 152
SL + E I + +E + + Y + ++ V + +
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSIYLELK-----VKLENEYAL--HRSIVDHYNIPK 457
Query: 153 IGDKKNSPLYTSDNFWQMSDTGPCGPCSEIFYDCGSTFH---GNPPGSKENFGNRYIEIW 209
D + D ++ S I + H P F ++
Sbjct: 458 TFDSDDLIPPYLDQYF----------YSHIGH------HLKNIEHPERMTLFRMVFL--- 498
Query: 210 NNVFMQFNKEINPKT-----GSI-----KLTKLPKYCVDTGMGLERLASILQNVYNNYET 259
+ F++ K + T GSI +L Y D ERL + + + E
Sbjct: 499 DFRFLE-QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEE 557
Query: 260 DLFKT 264
+L +
Sbjct: 558 NLICS 562
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 31.1 bits (69), Expect = 0.44
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 12/40 (30%)
Query: 374 KYGIKILENIL-LTKPDKLDGKLAFILYDTYGFPIDLTID 412
K +K L+ L L D LA I T++
Sbjct: 19 KQALKKLQASLKLYADDSAPA-LA----------IKATME 47
Score = 28.4 bits (62), Expect = 3.3
Identities = 7/32 (21%), Positives = 13/32 (40%), Gaps = 5/32 (15%)
Query: 218 KEINPKTGSIKLTKLPKYCVDTGMGLERLASI 249
+ + S+KL Y D+ L A++
Sbjct: 20 QALKKLQASLKL-----YADDSAPALAIKATM 46
>2odr_C Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 701
Score = 30.0 bits (67), Expect = 1.8
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 24/121 (19%)
Query: 240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIID 299
G+G+ERLA I N D+ RE + L + + +D
Sbjct: 338 GLGVERLAMISGNF-----ADV---------REMVYPQFYEHKL----NDRNVASMVKLD 379
Query: 300 GVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIE 359
V +E + +I ++ + + K F K +KI++ + E
Sbjct: 380 KVPVMDEIYDLT-KELIESCVKNKDLKSPCELAIE---KTFSFGK--TKKNVKINIFEKE 433
Query: 360 E 360
E
Sbjct: 434 E 434
>2odr_D Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 685
Score = 29.6 bits (66), Expect = 2.8
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 24/121 (19%)
Query: 240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIID 299
G+G+ERLA I N D+ RE + L + + +D
Sbjct: 338 GLGVERLAMISGNF-----ADV---------REMVYPQFYEHKL----NDRNVASMVKLD 379
Query: 300 GVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIE 359
V +E + +I ++ + + K F K +KI++ + E
Sbjct: 380 KVPVMDEIYDLT-KELIESCVKNKDLKSPCELAIE---KTFSFGK--TKKNVKINIFEKE 433
Query: 360 E 360
E
Sbjct: 434 E 434
>3cux_A Malate synthase; TIM barrel, glyoxylate bypass, transferase,
tricarboxylic acid cycle; 1.70A {Bacillus anthracis}
Length = 528
Score = 29.5 bits (66), Expect = 2.9
Identities = 20/89 (22%), Positives = 29/89 (32%), Gaps = 15/89 (16%)
Query: 178 PCSEIFYDCGSTFHGNPPGSKENFGNRYI-----------EIWNNVFMQFNKEINPKTGS 226
S D G F N E Y +WN+VF+ K I G+
Sbjct: 179 NMSGSLVDFGLYFFHNAKALLEKGSGPYFYLPKMESYLEARLWNDVFVFAQKYIGIPNGT 238
Query: 227 IKLTKLPKYCVDTGMGLERLASILQNVYN 255
IK T ++T + IL + +
Sbjct: 239 IKAT----VLLETIHASFEMDEILYELKD 263
>3vgx_D Envelope glycoprotein GP160; 6-helix bundle, membrane fusion,
membrane protein; HET: GOL; 1.74A {Human
immunodeficiency virus type 1}
Length = 32
Score = 25.5 bits (56), Expect = 3.9
Identities = 10/22 (45%), Positives = 17/22 (77%), Gaps = 1/22 (4%)
Query: 207 EIWNNV-FMQFNKEINPKTGSI 227
+IWNN+ +M++++EIN T I
Sbjct: 1 QIWNNMTWMEWDREINNYTSLI 22
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.1 bits (65), Expect = 4.3
Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 23/88 (26%)
Query: 258 ETDLFKTLIKAAARETNCNNLKNNSLKVIADHIR---------ACVFLIIDGVFPGN--- 305
E+ ++K R N + K + H + + ++ G+ PGN
Sbjct: 1354 ESATINEMMKHLGRS-EGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRNA 1412
Query: 306 -------EGRGYVL---RRIIRRAIRYG 323
E YVL + + +R
Sbjct: 1413 DNVDKILEQFEYVLYPSKTLKTDGVRAV 1440
>3e6i_A CYPIIE1, P450-J, cytochrome P450 2E1; CYP2E1, monooxygenase,
acetaminophen, oxidoreductase, heme, endoplasmic
reticulum, iron, membrane; HET: HEM; 2.20A {Homo
sapiens} PDB: 3e4e_A* 3gph_A* 3koh_A* 3lc4_A* 3t3z_A*
Length = 476
Score = 28.7 bits (65), Expect = 4.4
Identities = 10/41 (24%), Positives = 20/41 (48%), Gaps = 9/41 (21%)
Query: 415 KEHNVSFNKND-------FILEMEKQRNNARLNSKFKDIKL 448
KEH+ S + N ++EMEK++++A + +
Sbjct: 230 KEHHQSLDPNCPRDLTDCLLVEMEKEKHSA--ERLYTMDGI 268
>2hi4_A Cytochrome P450 1A2; CYP1A2, monooxygenase, drug metabolizing
enzyme, alpha-naphthoflavone, benzo(H)flavone, 7,8-
benzoflavone, oxidoreductase; HET: HEM BHF; 1.95A {Homo
sapiens}
Length = 495
Score = 28.7 bits (65), Expect = 4.5
Identities = 7/41 (17%), Positives = 13/41 (31%), Gaps = 9/41 (21%)
Query: 415 KEHNVSFNKND-------FILEMEKQRNNARLNSKFKDIKL 448
+EH F+KN +K + + K+
Sbjct: 245 QEHYQDFDKNSVRDITGALFKHSKKGPRAS--GNLIPQEKI 283
>2du7_A O-phosphoseryl-tRNA synthetase; alpha4 tetramer, ligase, structural
genomics, NPPSFA; 3.60A {Methanocaldococcus jannaschii}
Length = 549
Score = 28.8 bits (64), Expect = 4.7
Identities = 19/121 (15%), Positives = 35/121 (28%), Gaps = 24/121 (19%)
Query: 240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIID 299
G+G+ERLA I+ D+ R L + +D
Sbjct: 331 GLGVERLAMIIYGY-----EDV---------RAMVYPQFYEYRLS----DRDIAGMIRVD 372
Query: 300 GVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIE 359
V P + +I I K S+ + + + +K+ + + E
Sbjct: 373 KV-PILDEFYNFANELIDICIANKDKESPCSVEVKREFNFNGER-----RVIKVEIFENE 426
Query: 360 E 360
Sbjct: 427 P 427
>1r9o_A Cytochrome P450 2C9; monooxygenase, drug metabolizing enzyme,
oxidoreductas; HET: HEM FLP; 2.00A {Homo sapiens} SCOP:
a.104.1.1 PDB: 1og5_A* 1og2_A* 2nnj_A* 1pq2_A* 2nni_A*
2nnh_A* 2vn0_A* 1nr6_A* 1dt6_A* 1n6b_A*
Length = 477
Score = 28.7 bits (65), Expect = 4.7
Identities = 13/41 (31%), Positives = 22/41 (53%), Gaps = 9/41 (21%)
Query: 415 KEHNVSFNKND-------FILEMEKQRNNARLNSKFKDIKL 448
KEH S + N+ F+++MEK+++N S+F L
Sbjct: 232 KEHQESMDMNNPQDFIDCFLMKMEKEKHNQ--PSEFTIESL 270
>2odr_A Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 665
Score = 28.8 bits (64), Expect = 4.9
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 24/121 (19%)
Query: 240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIID 299
G+G+ERLA I N D+ RE + L + + +D
Sbjct: 338 GLGVERLAMISGNF-----ADV---------REMVYPQFYEHKL----NDRNVASMVKLD 379
Query: 300 GVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIE 359
V +E + +I ++ + + K F K +KI++ + E
Sbjct: 380 KVPVMDEIYDLT-KELIESCVKNKDLKSPCELAIE---KTFSFGK--TKKNVKINIFEKE 433
Query: 360 E 360
E
Sbjct: 434 E 434
>2fdv_A Cytochrome P450 2A6; CYP2A6, monooxygenase, drug metabolizing
enzyme, coumarin 7-hydroxylase, nicotine oxidase,
oxidoreductase; HET: HEM D2G; 1.65A {Homo sapiens} PDB:
1z11_A* 1z10_A* 2fdu_A* 2fdw_A* 2fdy_A* 3t3r_A* 2pg5_A*
2pg7_A* 2pg6_A* 3t3q_A* 3ebs_A* 2p85_A* 3t3s_A*
Length = 476
Score = 28.3 bits (64), Expect = 5.6
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 415 KEHNVSFNKND-------FILEMEKQRNNARLNSKFKDIKL 448
+ + + + N F++ M+++ N N++F L
Sbjct: 231 EHNQRTLDPNSPRDFIDSFLIRMQEEEKNP--NTEFYLKNL 269
>3czh_A Cytochrome P450 2R1; vitamin D, vitamin S 25-hydroxylase, drug
metabolism, structural genomics, structural genomics
consortium, SGC; HET: BCD HEM D2V; 2.30A {Homo sapiens}
SCOP: a.104.1.1 PDB: 2ojd_A* 3c6g_A* 3dl9_A*
Length = 481
Score = 28.3 bits (64), Expect = 5.6
Identities = 7/41 (17%), Positives = 18/41 (43%), Gaps = 9/41 (21%)
Query: 415 KEHNVSFNKND-------FILEMEKQRNNARLNSKFKDIKL 448
++ +V+ ++ EM++ +N+ +S F L
Sbjct: 236 EKASVNRKPQLPQHFVDAYLDEMDQGKNDP--SSTFSKENL 274
>3vh7_B CP32M; 6-helix bundle, membrane fusion inhibition, membrane protein
inhibitor complex; 2.02A {Human immunodeficiency virus
type 1} PDB: 3vgy_D
Length = 34
Score = 24.8 bits (54), Expect = 6.9
Identities = 7/22 (31%), Positives = 12/22 (54%), Gaps = 1/22 (4%)
Query: 207 EIWNNV-FMQFNKEINPKTGSI 227
WN + +M++ +EI T I
Sbjct: 3 VEWNEMTWMEWEREIENYTKLI 24
>1po5_A Cytochrome P450 2B4; oxidoreductase, membrane protein, CYP 2B4, CYP
LM2, cytochro monooxygenase; HET: HEM; 1.60A
{Oryctolagus cuniculus} SCOP: a.104.1.1 PDB: 3mvr_A*
2bdm_A* 3g5n_A* 3g93_A* 3kw4_A* 3me6_A* 1suo_A* 3r1a_A*
3r1b_A* 2q6n_A* 3tk3_A* 3ibd_A* 3qoa_A* 3qu8_A*
Length = 476
Score = 27.9 bits (63), Expect = 6.9
Identities = 8/41 (19%), Positives = 21/41 (51%), Gaps = 9/41 (21%)
Query: 415 KEHNVSFNKND-------FILEMEKQRNNARLNSKFKDIKL 448
++H + + ++ ++L MEK +++ +S+F L
Sbjct: 231 EKHRATLDPSNPRDFIDVYLLRMEKDKSDP--SSEFHHQNL 269
>3exc_X Uncharacterized protein; ferredoxin fold, double split
beta-alpha-beta fold, dimer, C aspartate, RNA'ASE,
hydrolase; 2.25A {Sulfolobus solfataricus}
Length = 91
Score = 26.2 bits (58), Expect = 7.9
Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 20/85 (23%)
Query: 311 VLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEE---- 366
++ + G + Q S F + K+L ++ I+
Sbjct: 17 KRNKLANNLKKLGLERIQRSAFEGDM-------DSQRMKDLV---RVVKLIVDTNTDIVH 66
Query: 367 ------ECFRKTLKYGIKILENILL 385
+ + + G + LE L+
Sbjct: 67 IIPLGIRDWERRIVIGREGLEEWLV 91
>2odr_B Phosphoseryl-tRNA synthetase; phosphoserine tRNA synthetase class
II, ligase; 3.23A {Methanococcus maripaludis}
Length = 648
Score = 28.0 bits (62), Expect = 8.2
Identities = 23/121 (19%), Positives = 41/121 (33%), Gaps = 24/121 (19%)
Query: 240 GMGLERLASILQNVYNNYETDLFKTLIKAAARETNCNNLKNNSLKVIADHIRACVFLIID 299
G+G+ERLA I N D+ RE + L + + +D
Sbjct: 338 GLGVERLAMISGNF-----ADV---------REMVYPQFYEHKL----NDRNVASMVKLD 379
Query: 300 GVFPGNEGRGYVLRRIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIE 359
V +E + +I ++ + + K F K +KI++ + E
Sbjct: 380 KVPVMDEIYDLT-KELIESCVKNKDLKSPCELAIE---KTFSFGK--TKKNVKINIFEKE 433
Query: 360 E 360
E
Sbjct: 434 E 434
>2ffu_A Ppgalnact-2, polypeptide N-acetylgalactosaminyltransferase 2,
protein-UDP; ppgalnact, mucin, glycosyltransferase; HET:
UDP; 1.64A {Homo sapiens} PDB: 2ffv_A*
Length = 501
Score = 27.4 bits (60), Expect = 9.9
Identities = 13/64 (20%), Positives = 19/64 (29%), Gaps = 4/64 (6%)
Query: 163 TSDNFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENF----GNRYIEIWNNVFMQFNK 218
S WQ + PCS + + PG R E+W + + F
Sbjct: 268 ISFRVWQCGGSLEIIPCSRVGHVFRKQHPYTFPGGSGTVFARNTRRAAEVWMDEYKNFYY 327
Query: 219 EINP 222
P
Sbjct: 328 AAVP 331
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.140 0.428
Gapped
Lambda K H
0.267 0.0627 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,117,377
Number of extensions: 442397
Number of successful extensions: 1132
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1092
Number of HSP's successfully gapped: 45
Length of query: 451
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 354
Effective length of database: 3,993,456
Effective search space: 1413683424
Effective search space used: 1413683424
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.7 bits)