RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13352
(451 letters)
>d1riqa2 d.104.1.1 (A:1-236) Alanyl-tRNA synthetase (AlaRS) {Aquifex
aeolicus [TaxId: 63363]}
Length = 236
Score = 280 bits (718), Expect = 1e-93
Identities = 137/257 (53%), Positives = 180/257 (70%), Gaps = 22/257 (8%)
Query: 1 MKSIEICNKFLSFFKSKGHTIVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYLRA 60
+ + EI FLSFF+ KGHT V S+ L+P+ND +LLF N+GMV FK+VFLG+EKR Y RA
Sbjct: 2 LSAHEIRELFLSFFEKKGHTRVKSAPLVPENDPTLLFVNAGMVPFKNVFLGLEKRPYKRA 61
Query: 61 TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLS 120
TS Q+CLR GKHNDLE VGYT+ HHTFF+MLGN+SFGDYFK E++++ WE +T++ L
Sbjct: 62 TSCQKCLRVSGKHNDLEQVGYTSRHHTFFEMLGNFSFGDYFKKEAIEYAWEFVTEVLKLP 121
Query: 121 IERLWITVYITDDETYNIWTNKIGVPKERVIRIGDKKNSPLYTSDNFWQMSDTGPCGPCS 180
E+L+++VY D+E Y IW IG+P ER+ R+G++ DNFWQM D GPCGP S
Sbjct: 122 KEKLYVSVYKDDEEAYRIWNEHIGIPSERIWRLGEE--------DNFWQMGDVGPCGPSS 173
Query: 181 EIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVDTG 240
EI+ D G + G+ RY+EIWN VFMQ+N++ N LT LP +DTG
Sbjct: 174 EIYVDRGEEYEGDE---------RYLEIWNLVFMQYNRDENG-----VLTPLPHPNIDTG 219
Query: 241 MGLERLASILQNVYNNY 257
MGLER+AS+LQ +N+
Sbjct: 220 MGLERIASVLQGKNSNF 236
>d1riqa1 a.203.1.1 (A:237-457) Putative anticodon-binding domain of
alanyl-tRNA synthetase (AlaRS) {Aquifex aeolicus [TaxId:
63363]}
Length = 221
Score = 145 bits (367), Expect = 8e-42
Identities = 81/202 (40%), Positives = 116/202 (57%), Gaps = 8/202 (3%)
Query: 258 ETDLFKTLIKAAARETN----CNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLR 313
E D+ LI+ + + +L+VIADH+RA F I DGV P NEGRGYV+R
Sbjct: 1 EIDIIFPLIQFGEEVSGKKYGEKFETDVALRVIADHLRAITFAISDGVIPSNEGRGYVIR 60
Query: 314 RIIRRAIRYGYKLGQNSIFLYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTL 373
RI+RRA+R+GYKLG + FLYK V ++ Y EL++S ++ I+K EE+ F KTL
Sbjct: 61 RILRRAMRFGYKLGIENPFLYKGVDLVVDIMKEPYPELELSREFVKGIVKGEEKRFIKTL 120
Query: 374 KYGIKILE----NILLTKPDKLDGKLAFILYDTYGFPIDLTIDICKEHNVSFNKNDFILE 429
K G++ ++ L L GK F YDTYGFP+DL +I +E + + F E
Sbjct: 121 KAGMEYIQEVIQKALEEGRKTLSGKEVFTAYDTYGFPVDLIDEIAREKGLGIDLEGFQCE 180
Query: 430 MEKQRNNARLNSKFKDIKLNII 451
+E+QR AR + K + K+ +
Sbjct: 181 LEEQRERARKHFKVEAKKVKPV 202
>d1pv0a_ a.2.12.1 (A:) Sporulation inhibitor Sda {Bacillus subtilis
[TaxId: 1423]}
Length = 46
Score = 27.1 bits (60), Expect = 0.46
Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 333 LYKLVKDLIFNTYIIYKELKISVIKIEEILKKEEECFRKTLKYGIKI 379
+ KL +L+ +Y E+ ++ IE I E E R++L + I +
Sbjct: 1 MRKLSDELLIESYFKATEMNLNRDFIELI---ENEIKRRSLGHIISV 44
>d1wioa2 b.1.1.1 (A:179-291) CD4 V-set domains {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 28.3 bits (63), Expect = 0.70
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 3/51 (5%)
Query: 87 TFFQMLG---NWSFGDYFKYESLQWTWELLTQIYGLSIERLWITVYITDDE 134
++ G +SF F E L + EL Q S + WIT + + E
Sbjct: 7 IVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKE 57
>d1ftra2 d.58.33.1 (A:149-296)
Formylmethanofuran:tetrahydromethanopterin
formyltransferase {Archaeon Methanopyrus kandleri
[TaxId: 2320]}
Length = 148
Score = 26.6 bits (59), Expect = 4.1
Identities = 17/82 (20%), Positives = 34/82 (41%), Gaps = 16/82 (19%)
Query: 266 IKAAARETNCNNLKNNSLKVIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIR---- 321
+ A+ + C +++N L + ++ ++I+G+ +R I A +
Sbjct: 71 LPASTNDAYCPTVEDNEL---PEGVKCVYEIVINGLNEEAVKEA--MRVGIEAACQQPGV 125
Query: 322 -------YGYKLGQNSIFLYKL 336
+G KLGQ I L+ L
Sbjct: 126 VKISAGNFGGKLGQYEIHLHDL 147
>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase
{Pseudomonas sp., strain 101 [TaxId: 306]}
Length = 186
Score = 26.9 bits (59), Expect = 4.1
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 10/74 (13%)
Query: 12 SFFKSKGHTIVPSSSLIPDN---DSSLLFTNSGMVQ-FKDVFLG---IEKRNYLRATSIQ 64
+ +S GHT+V +S + + L+ + + Q F +L I K L+
Sbjct: 61 KYLESNGHTLVVTSDKDGPDSVFERELVDADVVISQPFWPAYLTPERIAKAKNLKLAL-- 118
Query: 65 RCLRAGGKHNDLEN 78
G H DL++
Sbjct: 119 -TAGIGSDHVDLQS 131
>d1f3va_ d.58.22.1 (A:) TRADD, N-terminal domain {Human (Homo
sapiens) [TaxId: 9606]}
Length = 158
Score = 26.3 bits (58), Expect = 4.9
Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 11/42 (26%)
Query: 350 ELKISVIKIEEILKKEEECFRKTLKYGIKILENILLTKPDKL 391
EL+ +++ +L EE C L IL +PD+L
Sbjct: 110 ELRAGAERLDALLADEERC-----------LSCILAQQPDRL 140
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 26.6 bits (58), Expect = 6.4
Identities = 16/62 (25%), Positives = 23/62 (37%), Gaps = 4/62 (6%)
Query: 184 YDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTGSIKLTKLPKYCVD--TGM 241
+ ST+ GNP G +E+ + N + +L KLP V G
Sbjct: 282 GEHFSTYGGNPLGC--RVAIAALEVLEEENLAENADKLGIILRNELMKLPSDVVTAVRGK 339
Query: 242 GL 243
GL
Sbjct: 340 GL 341
>d1c0aa3 d.104.1.1 (A:107-287,A:421-585) Aspartyl-tRNA synthetase
(AspRS) {Escherichia coli [TaxId: 562]}
Length = 346
Score = 26.6 bits (58), Expect = 6.7
Identities = 32/287 (11%), Positives = 69/287 (24%), Gaps = 37/287 (12%)
Query: 5 EICNKFLSFFKSKG----HT--IVPSSSLIPDNDSSLLFTNSGMVQFKDVFLGIEKRNYL 58
+I + F G T + ++ + + G + K+ +
Sbjct: 37 KITSLVRRFMDDHGFLDIETPMLTKATPEGARDYLVPSRVHKGKFYALPQSPQLFKQLLM 96
Query: 59 RA-----TSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESL--QWTWE 111
+ I +C R + F Q+ SF + +
Sbjct: 97 MSGFDRYYQIVKCFRDEDLR--------ADRQPEFTQIDVETSFMTAPQVREVMEALVRH 148
Query: 112 LLTQIYGLSIERLWITVYITDDETYNI------WTNKIGVPKERVIRIGDKKNSPLYTSD 165
L ++ G+ + + + + Y +K + + T+
Sbjct: 149 LWLEVKGVDLGDFPVMTFAEAERRYGSDKPDLRDESKWAPLWVIDFPMFEDDGEGGLTAM 208
Query: 166 NFWQMSDTGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQFNKEINPKTG 225
+ S + + + + G + I N Q I
Sbjct: 209 HHPFTSPKDMTAAELKAAPENAVANAYDMVINGYEVGGGSVRIHNGDMQQTVFGILGINE 268
Query: 226 SIKLTKLPKY----------CVDTGMGLERLASILQNVYNNYETDLF 262
+ K GL+RL +L N + F
Sbjct: 269 EEQREKFGFLLDALKYGTPPHAGLAFGLDRLTMLLTGTDNIRDVIAF 315
>d1m5sa2 d.58.33.1 (A:146-297)
Formylmethanofuran:tetrahydromethanopterin
formyltransferase {Archaeon Methanosarcina barkeri
[TaxId: 2208]}
Length = 152
Score = 25.8 bits (57), Expect = 6.9
Identities = 19/83 (22%), Positives = 36/83 (43%), Gaps = 14/83 (16%)
Query: 266 IKAAARETNCNNLKNNSLK-VIADHIRACVFLIIDGVFPGNEGRGYVLRRIIRRAIR--- 321
+KA A E C ++K+ I + A ++I+G+ + ++ I+ A+
Sbjct: 71 LKATANERFCPSIKDKIENTEIPADVNAVYEIVINGLDEESIKAA--MKAGIKAAVTVPG 128
Query: 322 --------YGYKLGQNSIFLYKL 336
YG KLG+ L++L
Sbjct: 129 VKKISAGNYGGKLGKYQFKLHEL 151
>d1e1oa2 d.104.1.1 (A:161-502) Lysyl-tRNA synthetase (LysRS)
{Escherichia coli, gene lysU [TaxId: 562]}
Length = 342
Score = 26.3 bits (57), Expect = 7.7
Identities = 32/224 (14%), Positives = 68/224 (30%), Gaps = 32/224 (14%)
Query: 66 CLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKYESLQWTWELLTQIYGLSIERLW 125
A ++DL + + + ++LG +E LT + R
Sbjct: 119 LYMAYADYHDLIELTESLFRTLAQEVLGTTKVTYGEHVFDFGKPFEKLTMREAIKKYRPE 178
Query: 126 ITV-YITDDETYNIWTNKIGVPKERVIRIGD------------KKNSPLYTSDNFWQMSD 172
+ + + + IG+ E+ +G P + ++ ++S
Sbjct: 179 TDMADLDNFDAAKALAESIGITVEKSWGLGRIVTEIFDEVAEAHLIQPTFITEYPAEVSP 238
Query: 173 TGPCGPCSEIFYDCGSTFHGNPPGSKENFGNRYIEIWNNVFMQ--FNKEINPKTGSIK-- 228
+ D F G GN + E+ + F +++N K
Sbjct: 239 LARRNDVNPEITDRFEFFIGG-----REIGNGFSELNDAEDQAERFQEQVNAKAAGDDEA 293
Query: 229 ------LTKLPKY-CVDT---GMGLERLASILQNVYNNYETDLF 262
+Y T G+G++R+ + N + + LF
Sbjct: 294 MFYDEDYVTALEYGLPPTAGLGIGIDRMIMLFTNSHTIRDVILF 337
>d1mqba_ d.144.1.7 (A:) epha2 receptor tyrosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 283
Score = 26.3 bits (57), Expect = 8.0
Identities = 19/137 (13%), Positives = 42/137 (30%), Gaps = 5/137 (3%)
Query: 44 QFKDVFLGIEKRNYLRATSIQRCLRAGGKHNDLENVGYTNYHHTFFQMLGNWSFGDYFKY 103
K + ++ ++L I HN + G + + + G K+
Sbjct: 43 TLKAGYTEKQRVDFLGEAGIMGQFS---HHNIIRLEGVISKYKPMMIITEYMENGALDKF 99
Query: 104 ESLQWTWELLTQIYGLSIERLWITVYITDDETY--NIWTNKIGVPKERVIRIGDKKNSPL 161
+ + Q+ G+ Y+ + ++ I V V ++ D S +
Sbjct: 100 LREKDGEFSVLQLVGMLRGIAAGMKYLANMNYVHRDLAARNILVNSNLVCKVSDFGLSRV 159
Query: 162 YTSDNFWQMSDTGPCGP 178
D + +G P
Sbjct: 160 LEDDPEATYTTSGGKIP 176
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.140 0.428
Gapped
Lambda K H
0.267 0.0522 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,802,806
Number of extensions: 92171
Number of successful extensions: 255
Number of sequences better than 10.0: 1
Number of HSP's gapped: 250
Number of HSP's successfully gapped: 23
Length of query: 451
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 363
Effective length of database: 1,199,356
Effective search space: 435366228
Effective search space used: 435366228
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)