BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy13354
(1342 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CES|A Chain A, Crystal Structure Of E.Coli Mnmg (Gida), A Highly-Conserved
Trna Modifying Enzyme
pdb|3CES|B Chain B, Crystal Structure Of E.Coli Mnmg (Gida), A Highly-Conserved
Trna Modifying Enzyme
pdb|3CES|C Chain C, Crystal Structure Of E.Coli Mnmg (Gida), A Highly-Conserved
Trna Modifying Enzyme
pdb|3CES|D Chain D, Crystal Structure Of E.Coli Mnmg (Gida), A Highly-Conserved
Trna Modifying Enzyme
Length = 651
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/582 (57%), Positives = 428/582 (73%), Gaps = 12/582 (2%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R
Sbjct: 78 KGHLVKEV----DALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTA 133
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS
Sbjct: 134 LENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYS 193
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +
Sbjct: 194 GGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFM 252
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN + HP+Q+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF +
Sbjct: 253 GNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADR 312
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H IFLEPEG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P
Sbjct: 313 NQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDP 372
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK +LE+K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYL
Sbjct: 373 RDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYL 432
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K
Sbjct: 433 GVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKL 492
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I +E QRLK TW+ PS E L + E S +LL P + Y LT+L
Sbjct: 493 ENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTL---- 548
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ + E +Q++IQ++YEGYI RQ P LDY ++ LS
Sbjct: 549 --TPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSN 606
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYL-KSGFLK 1337
E KLN +KP +IGQASRISGVTPAA+++LL++L K G L+
Sbjct: 607 EVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGMLR 648
>pdb|3CP2|A Chain A, Crystal Structure Of Gida From E. Coli
Length = 649
Score = 696 bits (1796), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/582 (57%), Positives = 428/582 (73%), Gaps = 12/582 (2%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R
Sbjct: 76 KGHLVKEV----DALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTA 131
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS
Sbjct: 132 LENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYS 191
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +
Sbjct: 192 GGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFM 250
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN + HP+Q+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF +
Sbjct: 251 GNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADR 310
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H IFLEPEG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P
Sbjct: 311 NQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDP 370
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK +LE+K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYL
Sbjct: 371 RDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYL 430
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K
Sbjct: 431 GVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKL 490
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I +E QRLK TW+ PS E L + E S +LL P + Y LT+L
Sbjct: 491 ENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTL---- 546
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ + E +Q++IQ++YEGYI RQ P LDY ++ LS
Sbjct: 547 --TPFAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSN 604
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYL-KSGFLK 1337
E KLN +KP +IGQASRISGVTPAA+++LL++L K G L+
Sbjct: 605 EVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGMLR 646
>pdb|3G05|A Chain A, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
pdb|3G05|B Chain B, Crystal Structure Of N-Terminal Domain (2-550) Of E.Coli
Mnmg
Length = 576
Score = 632 bits (1629), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 301/506 (59%), Positives = 382/506 (75%), Gaps = 11/506 (2%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R
Sbjct: 82 KGHLVKEV----DALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTA 137
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS
Sbjct: 138 LENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYS 197
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +
Sbjct: 198 GGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFM 256
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN + HP+Q+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF +
Sbjct: 257 GNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADR 316
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H IFLEPEG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P
Sbjct: 317 NQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDP 376
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK +LE+K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYL
Sbjct: 377 RDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSDDKEGWAPARSQAYL 436
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K
Sbjct: 437 GVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKL 496
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I +E QRLK TW+ PS E L + E S +LL P + Y LT+L
Sbjct: 497 ENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTL---- 552
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEG 1262
+ + E +Q++IQ++YEG
Sbjct: 553 --TPFAPALTDEQAAEQVEIQVKYEG 576
>pdb|2ZXH|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXH|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form I Crystal
pdb|2ZXI|A Chain A, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|B Chain B, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|C Chain C, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
pdb|2ZXI|D Chain D, Structure Of Aquifex Aeolicus Gida In The Form Ii Crystal
Length = 637
Score = 504 bits (1297), Expect = e-142, Method: Compositional matrix adjust.
Identities = 275/579 (47%), Positives = 383/579 (66%), Gaps = 36/579 (6%)
Query: 764 VLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 823
V+ +DA+GG M A D++GIQF++LN+ KG AV++ RAQ D+ Y++ ++ ENQ NL
Sbjct: 80 VVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENL 139
Query: 824 YLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883
Y+ QEEV D+I+K N+++GV T +G+++ +K V++TTGTFLNG I+IG K GR G+
Sbjct: 140 YIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEP 199
Query: 884 STTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSV----LGNI 939
+ L+ + R KTGTP R+DKRTIDFS +E GD DP P FS +G+
Sbjct: 200 RSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGD-DPPPKFSFWTEPVGSY 258
Query: 940 NLHPK---QLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
PK Q++C+IT+T KTH IIR + ++ G I+ IGPRYCPSIEDK+ +FP K
Sbjct: 259 -WFPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFPDK 317
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+ H IFLEPEG+ E YPNG+STSLP E Q E+ +SI G++N +IRP YAIEYD P
Sbjct: 318 ERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPP 377
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
L +LETK+I GLF AG NGTTGYEEAA QG++AG+NAAL + ++P RD++Y+
Sbjct: 378 TELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYI 437
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GV++DDL TKG+ EPYR+FTSR+EYRL +R+DNA LRL ++G +LG +S +Q+K
Sbjct: 438 GVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYK------ 491
Query: 1177 EIITKELQRLKDTWINPSILNTGESERV---LGKRIKHEYSLSNLLTWPNVNYNTLTSLK 1233
+ KEL+R + W +SERV +G + YS++ L+T +NY TL +
Sbjct: 492 --LVKELEREIEKW-----KEFYKSERVSVAVGGDTRS-YSVATLMT---MNY-TLDDV- 538
Query: 1234 GINGKNLYNTEIYQED-IKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQ 1292
K + E+ Q +K++++IQL+YE YI R+ P ++DY KI
Sbjct: 539 ----KEKFGYEVPQHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIP 594
Query: 1293 SLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYL 1331
L+ EAR+KL K+KP T+GQASRI G+TPAA+T LL+YL
Sbjct: 595 GLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYL 633
>pdb|3CP8|A Chain A, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|B Chain B, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|C Chain C, Crystal Structure Of Gida From Chlorobium Tepidum
pdb|3CP8|D Chain D, Crystal Structure Of Gida From Chlorobium Tepidum
Length = 641
Score = 486 bits (1251), Expect = e-137, Method: Compositional matrix adjust.
Identities = 253/565 (44%), Positives = 357/565 (63%), Gaps = 4/565 (0%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+DA+GG M A D +GIQFR+LN SKG A+ + RAQ D+ Y +R +E++ N+ L Q
Sbjct: 78 IDALGGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQ 137
Query: 828 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR-FGDFSTT 886
+ V + + K V + G +K IL GTFLNG IHIG+ + GR +
Sbjct: 138 DTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVE 197
Query: 887 SLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQL 946
L + L L S GRLKTGTPPRID R++D++ + EQ GD DPVP FS + +
Sbjct: 198 GLTESLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGDVDPVP-FSFSSTSVANRNLV 256
Query: 947 SCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPE 1006
SC++T T EKTH+I+R+ F SP+F+GK++ +GPRYCPSIEDK+ RFP K SHHIFLEPE
Sbjct: 257 SCYLTKTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSHHIFLEPE 316
Query: 1007 GIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETK 1066
G E Y NG STSLP + QI ++SI G++ A +IRPGYAIEYD+F+P ++S++ET+
Sbjct: 317 GTDTVEMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETR 376
Query: 1067 QIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITK 1126
+ LFFAGQINGT+GYEEAA+QGL+AG+NA ++ + GRDQAY+GVL+DDLITK
Sbjct: 377 PVENLFFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITK 436
Query: 1127 GIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRL 1186
+EPYRMFTS AE+RL LR DNADLRL +IG+ VS E + + L+ +
Sbjct: 437 ETKEPYRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESIIKRVQHCLEVM 496
Query: 1187 KDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIY 1246
K + P+ +NT + L + +K +L+ P ++ + ++ ++
Sbjct: 497 KTAKVTPAEINTLLMNKGL-QELKTPARALSLIKRPGISLQDILE-HSLSVRSAAEELCN 554
Query: 1247 QEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKYK 1306
+ +Q++I+++YEGYI R+ P N +Y + SLS E R+KL K++
Sbjct: 555 DPRVAEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHR 614
Query: 1307 PETIGQASRISGVTPAALTLLLIYL 1331
P TIGQASRI GV+P+ +++L+I L
Sbjct: 615 PATIGQASRILGVSPSDVSILMIRL 639
>pdb|3PGY|A Chain A, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|B Chain B, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|C Chain C, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant.
pdb|3PGY|D Chain D, Serine Hydroxymethyltransferase From Staphylococcus
Aureus, S95p Mutant
Length = 415
Score = 480 bits (1235), Expect = e-135, Method: Compositional matrix adjust.
Identities = 229/368 (62%), Positives = 289/368 (78%), Gaps = 2/368 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
++K D I E I +E QRQN+NIELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYYGG
Sbjct: 7 ITKQDKVIAEAIEREFQRQNSNIELIASENFVSEAVMEAQGSVLTNKYAEGYPGRRYYGG 66
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+F+D+ E IAI+R K +F AE NVQPHSG QAN AV+ L GDT++GM+L GGHL
Sbjct: 67 CEFVDVTESIAIDRAKALFGAEHVNVQPHSGPQANMAVYLVALEMGDTVLGMNLSHGGHL 126
Query: 128 THGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SGK++N + YG++K E+I+Y +V LA ++KPKLI+AGASAYS+ IDF++F
Sbjct: 127 THGAPVNFSGKFYNFVEYGVDKDTERINYDEVRKLALEHKPKLIVAGASAYSRTIDFKKF 186
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA +N+ MVDMAH AGL+AAG +PNPV +ADF+T+TTHK+LRGPRGG IL K++YK
Sbjct: 187 KEIADEVNAKLMVDMAHIAGLVAAGLHPNPVEYADFVTTTTHKTLRGPRGGMILCKEEYK 246
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ +FPGIQGGPL HVIAAKAVAF E L+ +FK YQ+QVVKNAK+L++ L G RI
Sbjct: 247 KDIDKTIFPGIQGGPLEHVIAAKAVAFGEALENNFKTYQQQVVKNAKVLAEALINEGFRI 306
Query: 307 VSGGTKSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365
VSGGT +H++ VD++ +TGK AE L+S I CNKN+IP D EKP+ TSGIRLG+ A
Sbjct: 307 VSGGTDNHLVAVDVKGSIGLTGKEAEETLDSVGITCNKNTIPFDQEKPFVTSGIRLGTPA 366
Query: 366 ITTRGFSE 373
TTRGF E
Sbjct: 367 ATTRGFDE 374
>pdb|1KKJ|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
B.Stearothermophilus
pdb|1KKP|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Serine
pdb|1KL1|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine
pdb|1KL2|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
pdb|1KL2|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase
Complexed With Glycine And 5-formyl Tetrahydrofolate
Length = 419
Score = 469 bits (1207), Expect = e-132, Method: Composition-based stats.
Identities = 216/378 (57%), Positives = 291/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|1YJS|A Chain A, K226q Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Glycine
Length = 419
Score = 468 bits (1204), Expect = e-131, Method: Composition-based stats.
Identities = 215/378 (56%), Positives = 291/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTH++LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHQTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|2VI8|A Chain A, Crystal Structure Of S172absshmt Internal Aldimine
pdb|2VIB|A Chain A, Crystal Structure Of S172absshmt Obtained In The Presence
Of L-Allo-Thr
pdb|2VIA|A Chain A, Crystal Structure Of S172absshmt L-Serine External
Aldimine
pdb|2VI9|A Chain A, Crystal Structure Of S172absshmt Glycine External Aldimine
Length = 405
Score = 468 bits (1203), Expect = e-131, Method: Composition-based stats.
Identities = 215/378 (56%), Positives = 291/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A A+AY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|2VGS|A Chain A, Crystal Structure Of E53qbsshmt Internal Aldimine
pdb|2VGT|A Chain A, Crystal Structure Of E53qbsshmt With Glycine
pdb|2VGV|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of L-Allo-Threonine
pdb|2VGW|A Chain A, Crystal Structure Of E53qbsshmt Obtained In The Presence
Of Glycine And 5-Fomyl Tetrahydrofolate
pdb|2VGU|A Chain A, Crystal Structure Of E53qbsshmt With L-Serine
Length = 407
Score = 468 bits (1203), Expect = e-131, Method: Composition-based stats.
Identities = 215/378 (56%), Positives = 291/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYA+GYPG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAQGYPGRRYYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|2W7D|A Chain A, Crystal Structure Of Y51fbsshmt Internal Aldimine
pdb|2W7E|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Glycine
pdb|2W7F|A Chain A, Crystal Structure Of Y51fbsshmt L-Ser External Aldimine
pdb|2W7G|A Chain A, Crystal Structure Of Y51fbsshmt L-Allo-Threonine Extrnal
Aldimine
pdb|2W7H|A Chain A, Crystal Structure Of Y51fbsshmt Obtained In The Presence
Of Gly And 5-Formyl Tetrahydrofolate
Length = 405
Score = 467 bits (1202), Expect = e-131, Method: Composition-based stats.
Identities = 215/378 (56%), Positives = 291/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNK+AEGYPG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKFAEGYPGRRYYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|1YJY|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus, Complex With Serine
pdb|1YJZ|A Chain A, K226m Mutant Of Serine Hydroxymethyltransferase From B.
Stearothermophilus
Length = 419
Score = 467 bits (1201), Expect = e-131, Method: Composition-based stats.
Identities = 215/378 (56%), Positives = 290/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTH +LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHMTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|2VMN|A Chain A, Crystal Structure Of N341absshmt Internal Aldimine
pdb|2VMO|A Chain A, Crystal Structure Of N341absshmt Gly External Aldimine
pdb|2VMP|A Chain A, Crystal Structure Of N341absshmt L-Ser External Aldimine
pdb|2VMQ|A Chain A, Structure Of N341absshmt Crystallized In The Presence Of
L- Allo-Thr
Length = 405
Score = 466 bits (1199), Expect = e-131, Method: Composition-based stats.
Identities = 215/378 (56%), Positives = 290/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NK +IP DPE P+ TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKATIPYDPESPFVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|2VMV|A Chain A, Crystal Structure Of F351gbsshmt Internal Aldimine
pdb|2VMX|A Chain A, Crystal Structure Of F351gbsshmt In Complex With
L-Allo-Thr
pdb|2VMY|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMY|B Chain B, Crystal Structure Of F351gbsshmt In Complex With Gly And
Fthf
pdb|2VMW|A Chain A, Crystal Structure Of F351gbsshmt In Complex With L-Ser
pdb|2VMZ|A Chain A, Crystal Structure Of F351gbsshmt In Complex With Gly
Length = 405
Score = 466 bits (1199), Expect = e-131, Method: Composition-based stats.
Identities = 216/378 (57%), Positives = 290/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYYGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPGVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|2W7I|A Chain A, Crystal Structure Of Y61absshmt Internal Aldimine
pdb|2W7J|A Chain A, Crystal Structure Of Y61absshmt Glycine External Aldimine
pdb|2W7K|A Chain A, Crystal Structure Of Y61absshmt L-Serine External Aldimine
pdb|2W7L|A Chain A, Crystal Structure Of Y61absshmt L-Allo-Threonine External
Aldimine
pdb|2W7M|A Chain A, Crystal Structure Of Y61absshmt Obtained In The Presence
Of Glycine And 5-Formyl Tetrahydrofolate
Length = 405
Score = 465 bits (1197), Expect = e-131, Method: Composition-based stats.
Identities = 215/378 (56%), Positives = 290/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RY GG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYAGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|2VMR|A Chain A, Crystal Structure Of Y60absshmt Internal Aldimine
pdb|2VMS|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of Glycine
pdb|2VMT|A Chain A, Crystal Structure Of Y60absshmt L-Ser External Aldimine
pdb|2VMU|A Chain A, Crystal Structure Of Y60absshmt Crystallized In The
Presence Of L-Allo-Thr
Length = 405
Score = 465 bits (1197), Expect = e-131, Method: Composition-based stats.
Identities = 215/378 (56%), Positives = 290/378 (76%), Gaps = 3/378 (0%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+R YGG
Sbjct: 4 LPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRAYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GGHL
Sbjct: 64 CEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF +F
Sbjct: 124 THGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFAKF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL ++++
Sbjct: 184 REIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQFA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G +
Sbjct: 244 KQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++A+
Sbjct: 304 VSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAV 363
Query: 367 TTRGF--SELEIIKVVLA 382
TTRGF E++ I ++
Sbjct: 364 TTRGFGLEEMDEIAAIIG 381
>pdb|1DFO|A Chain A, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|B Chain B, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|C Chain C, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
pdb|1DFO|D Chain D, Crystal Structure At 2.4 Angstrom Resolution Of E. Coli
Serine Hydroxymethyltransferase In Complex With Glycine
And 5-Formyl Tetrahydrofolate
Length = 417
Score = 451 bits (1161), Expect = e-126, Method: Compositional matrix adjust.
Identities = 220/379 (58%), Positives = 290/379 (76%), Gaps = 5/379 (1%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M+ + N++ D ++W+ + +EK RQ +IELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 1 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+++D++E++AI+R K++F A+ ANVQPHSGSQAN AV+ ++L PGDT++GM+
Sbjct: 61 GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY 180
L GGHLTHG +N SGK +N + YG++ IDY +E AK++KPK+II G SAYS
Sbjct: 121 LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
+D+ + IA +I +Y VDMAH AGL+AAG YPNPVP A +T+TTHK+L GPRGG IL
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 240
Query: 241 MK----KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296
K + YKK +NSAVFPG QGGPLMHVIA KAVA KE ++P+FK YQ+QV KNAK +
Sbjct: 241 AKGGSEELYKK-LNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV 299
Query: 297 KILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFT 356
++ +RG ++VSGGT +H+ LVDL +K +TGK A++ L ANI NKNS+PNDP+ P+ T
Sbjct: 300 EVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVT 359
Query: 357 SGIRLGSSAITTRGFSELE 375
SGIR+G+ AIT RGF E E
Sbjct: 360 SGIRVGTPAITRRGFKEAE 378
>pdb|1EQB|A Chain A, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|B Chain B, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|C Chain C, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
pdb|1EQB|D Chain D, X-Ray Crystal Structure At 2.7 Angstroms Resolution Of
Ternary Complex Between The Y65f Mutant Of E-Coli Serine
Hydroxymethyltransferase, Glycine And 5-Formyl
Tetrahydrofolate
Length = 417
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/379 (57%), Positives = 290/379 (76%), Gaps = 5/379 (1%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M+ + N++ D ++W+ + +EK RQ +IELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 1 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRY+GGC+++D++E++AI+R K++F A+ ANVQPHSGSQAN AV+ ++L PGDT++GM+
Sbjct: 61 GKRYFGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY 180
L GGHLTHG +N SGK +N + YG++ IDY +E AK++KPK+II G SAYS
Sbjct: 121 LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
+D+ + IA +I +Y VDMAH AGL+AAG YPNPVP A +T+TTHK+L GPRGG IL
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 240
Query: 241 MK----KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296
K + YKK +NSAVFPG QGGPLMHVIA KAVA KE ++P+FK YQ+QV KNAK +
Sbjct: 241 AKGGSEELYKK-LNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV 299
Query: 297 KILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFT 356
++ +RG ++VSGGT +H+ LVDL +K +TGK A++ L ANI NKNS+PNDP+ P+ T
Sbjct: 300 EVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVT 359
Query: 357 SGIRLGSSAITTRGFSELE 375
SGIR+G+ AIT RGF E E
Sbjct: 360 SGIRVGTPAITRRGFKEAE 378
>pdb|3G8M|A Chain A, Serine Hydroxymethyltransferase Y55f Mutant
Length = 417
Score = 450 bits (1157), Expect = e-126, Method: Compositional matrix adjust.
Identities = 219/379 (57%), Positives = 290/379 (76%), Gaps = 5/379 (1%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M+ + N++ D ++W+ + +EK RQ +IELIASENYTS VM+AQG+ LTNK+AEGYP
Sbjct: 1 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKFAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+++D++E++AI+R K++F A+ ANVQPHSGSQAN AV+ ++L PGDT++GM+
Sbjct: 61 GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY 180
L GGHLTHG +N SGK +N + YG++ IDY +E AK++KPK+II G SAYS
Sbjct: 121 LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
+D+ + IA +I +Y VDMAH AGL+AAG YPNPVP A +T+TTHK+L GPRGG IL
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 240
Query: 241 MK----KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296
K + YKK +NSAVFPG QGGPLMHVIA KAVA KE ++P+FK YQ+QV KNAK +
Sbjct: 241 AKGGSEELYKK-LNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV 299
Query: 297 KILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFT 356
++ +RG ++VSGGT +H+ LVDL +K +TGK A++ L ANI NKNS+PNDP+ P+ T
Sbjct: 300 EVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVT 359
Query: 357 SGIRLGSSAITTRGFSELE 375
SGIR+G+ AIT RGF E E
Sbjct: 360 SGIRVGTPAITRRGFKEAE 378
>pdb|3ECD|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|C Chain C, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
pdb|3ECD|D Chain D, Crystal Structure Of Serine Hydroxymethyltransferase From
Burkholderia Pseudomallei
Length = 425
Score = 449 bits (1156), Expect = e-126, Method: Composition-based stats.
Identities = 218/377 (57%), Positives = 278/377 (73%), Gaps = 2/377 (0%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+++L++ D + ILKE +RQ + +ELIASEN S AV++AQG++LTNKYAEGYPGKRY
Sbjct: 10 SQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRY 69
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEG 124
YGGC+F D +E +AI R+K++FNA ANVQPHSG+QAN AV ++ PGDT++GMSL G
Sbjct: 70 YGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAG 129
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GHLTHG +SGKWFN++ YG+++ IDY +VE LA+++KP LIIAG SAY + +DF
Sbjct: 130 GHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDF 189
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK- 242
RF IA ++ + MVDMAH AG+IAAG + NPV A +TSTTHK+LRGPRGGF+L
Sbjct: 190 ARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTND 249
Query: 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302
++ K INSAVFPG+QGGPLMHVIA KAVAF E L DFK Y +V+ NA+ L +L
Sbjct: 250 EEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG 309
Query: 303 GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362
G+ +V+GGT +H++LVDLR K + G E LE A I CNKN IP DPEKP TSGIRLG
Sbjct: 310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLG 369
Query: 363 SSAITTRGFSELEIIKV 379
+ A TTRGF E +V
Sbjct: 370 TPAGTTRGFGAAEFREV 386
>pdb|3GBX|A Chain A, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
pdb|3GBX|B Chain B, Serine Hydroxymethyltransferase From Salmonella
Typhimurium
Length = 420
Score = 437 bits (1124), Expect = e-122, Method: Composition-based stats.
Identities = 215/377 (57%), Positives = 284/377 (75%), Gaps = 5/377 (1%)
Query: 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR 63
+ N++ D ++W+ +EK RQ +IELIASENYTS V +AQG+ LTNKYAEGYPGKR
Sbjct: 7 REXNIADYDAELWQAXEQEKVRQEEHIELIASENYTSPRVXQAQGSQLTNKYAEGYPGKR 66
Query: 64 YYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
YYGGC+++D++E++AI+R K++F A+ ANVQPHSGSQAN AV+ ++L PGDT++G +L +
Sbjct: 67 YYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGXNLAQ 126
Query: 124 GGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GGHLTHG +N SGK +N + YG+++ KIDY + LAK++KPK II G SAYS +D+
Sbjct: 127 GGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEXAKLAKEHKPKXIIGGFSAYSGVVDW 186
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK- 242
+ IA +I +Y VD AH AGLIAAG YPNPVP A +T+TTHK+L GPRGG IL K
Sbjct: 187 AKXREIADSIGAYLFVDXAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKG 246
Query: 243 ---KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299
+ YKK +NSAVFP QGGPL HVIA KAVA KE +P+FK+YQ+QV KNAK ++
Sbjct: 247 GDEELYKK-LNSAVFPSAQGGPLXHVIAGKAVALKEAXEPEFKVYQQQVAKNAKAXVEVF 305
Query: 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGI 359
RG ++VSGGT++H+ L+DL +K +TGK A++ L ANI NKNS+PNDP+ P+ TSGI
Sbjct: 306 LNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGI 365
Query: 360 RLGSSAITTRGFSELEI 376
R+GS A+T RGF E E+
Sbjct: 366 RIGSPAVTRRGFKEAEV 382
>pdb|2DKJ|A Chain A, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
pdb|2DKJ|B Chain B, Crystal Structure Of T.Th.Hb8 Serine
Hydroxymethyltransferase
Length = 407
Score = 433 bits (1114), Expect = e-121, Method: Composition-based stats.
Identities = 209/369 (56%), Positives = 273/369 (73%), Gaps = 2/369 (0%)
Query: 10 KIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCK 69
K D ++E+I E++RQ +ELIASEN+ S V EA G++LTNKYAEGYPG RYYGGC+
Sbjct: 6 KRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCE 65
Query: 70 FIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH 129
ID +E +AI R K +F A ANVQPHSGSQAN AV+ +++ PGDT+MGM L GGHLTH
Sbjct: 66 VIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTH 125
Query: 130 GMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYH 188
G +N SGK + + YG+ E ID ++V LA +++PK+I+AGASAY ++ DF+ F
Sbjct: 126 GSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFKAFRE 185
Query: 189 IAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK-KYKK 247
IA + +Y +VDMAH+AGL+AAG +PNP+P+A +TSTTHK+LRGPRGG IL + K
Sbjct: 186 IADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGK 245
Query: 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307
I+ +FPGIQGGPL HVIA KAVAF E L+P+FK Y + VV+NAK L++ L +RG RIV
Sbjct: 246 RIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIV 305
Query: 308 SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367
+GGT +H+ LVDLR K +TGK AE L++ I NKN+IP DP+ P TSGIR+G+ AIT
Sbjct: 306 TGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAIT 365
Query: 368 TRGFSELEI 376
TRGF+ E+
Sbjct: 366 TRGFTPEEM 374
>pdb|3N0L|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
pdb|3N0L|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Campylobacter Jejuni
Length = 417
Score = 412 bits (1059), Expect = e-115, Method: Compositional matrix adjust.
Identities = 196/370 (52%), Positives = 265/370 (71%), Gaps = 1/370 (0%)
Query: 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG 66
+L D +I+++ KE +RQ +E IASEN+T V E G++LTNKYAEGYPGKRYYG
Sbjct: 5 SLEXFDKEIFDLTNKELERQCEGLEXIASENFTLPEVXEVXGSILTNKYAEGYPGKRYYG 64
Query: 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGH 126
GC+F+D IE +AI R KK+FN + ANVQP+SGSQANQ V+ +++NPGD I+G L GGH
Sbjct: 65 GCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGXDLSHGGH 124
Query: 127 LTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
LTHG ++ SGK + S YG+ +IDY+KV +AKK KPKLI+ GASAY++ IDF +F
Sbjct: 125 LTHGAKVSSSGKXYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAYARVIDFAKF 184
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILM-KKKY 245
IA I +Y D+AH AGL+ AGE+P+P P+A ++STTHK+LRGPRGG I ++
Sbjct: 185 REIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIXTNDEEL 244
Query: 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305
K INSA+FPGIQGGPL HVIAAKAV FK L ++K+Y KQV NA++L+ +L R +
Sbjct: 245 AKKINSAIFPGIQGGPLXHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLXDRKFK 304
Query: 306 IVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365
+VS GT +H++L +++ +GK A+ L +A I NKN++P + P+ TSG+RLG+ A
Sbjct: 305 LVSDGTDNHLVLXSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPA 364
Query: 366 ITTRGFSELE 375
+T RGF E E
Sbjct: 365 LTARGFKEKE 374
>pdb|3H7F|A Chain A, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
pdb|3H7F|B Chain B, Crystal Structure Of Serine Hydroxymethyltransferase From
Mycobacterium Tuberculosis
Length = 447
Score = 397 bits (1020), Expect = e-110, Method: Composition-based stats.
Identities = 186/378 (49%), Positives = 264/378 (69%), Gaps = 6/378 (1%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L+++DP I E++ KE RQ + +E+IASEN+ AV++AQG++LTNKYAEG PG+RYYGG
Sbjct: 26 LAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGG 85
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+ +D++E +A +R K +F AE ANVQPHSG+QAN AV ++++PG+ ++G+ L GGHL
Sbjct: 86 CEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHL 145
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THGM LN SGK + + YG++ ID V A + +PK+IIAG SAY + +DF F
Sbjct: 146 THGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAF 205
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + + +VDMAH+AGL+AAG +P+PVP AD +++T H +L G R G I+ K++Y
Sbjct: 206 RSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHXTLGGGRSGLIVGKQQYA 265
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL-----DQ 301
K INSAVFPG QGGPLMHVIA KAVA K P+F Q++ + A+I++ L +
Sbjct: 266 KAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAK 325
Query: 302 RGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRL 361
G+ +VSGGT H++LVDLR+ + G+ AE +L I N+N++PNDP P TSG+R+
Sbjct: 326 AGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRI 385
Query: 362 GSSAITTRGFSELEIIKV 379
G+ A+ TRGF + E +V
Sbjct: 386 GTPALATRGFGDTEFTEV 403
>pdb|3OU5|A Chain A, Human Mitochondrial Serine Hydroxymethyltransferase 2
Length = 490
Score = 347 bits (891), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 180/401 (44%), Positives = 251/401 (62%), Gaps = 26/401 (6%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRY
Sbjct: 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRY 91
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+
Sbjct: 92 YGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLD 151
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGA 174
L +GGHLTHG M ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG
Sbjct: 152 LPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGT 211
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
SAY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG
Sbjct: 212 SAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271
Query: 235 RGGFILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279
R G I +K K + IN AVFP +QGGP H IAA AVA K+ P
Sbjct: 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 331
Query: 280 DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339
F+ Y QV+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE +I
Sbjct: 332 MFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSI 391
Query: 340 ICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
NKN+ P D G+RLG+ A+T+R F E + +VV
Sbjct: 392 TANKNTCPGD-RSAITPGGLRLGAPALTSRQFREDDFRRVV 431
>pdb|1XXI|B Chain B, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|C Chain C, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|D Chain D, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|G Chain G, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|H Chain H, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|I Chain I, Adp Bound E. Coli Clamp Loader Complex
Length = 368
Score = 321 bits (823), Expect = 1e-87, Method: Composition-based stats.
Identities = 159/361 (44%), Positives = 228/361 (63%), Gaps = 6/361 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 65 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML +D + +++A+ E +G ++++ N+ + + +L + P
Sbjct: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299
Query: 680 EILIKDSPNYN-EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
L D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359
Query: 739 Q 739
Sbjct: 360 H 360
>pdb|1JR3|A Chain A, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|B Chain B, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1JR3|C Chain C, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXH|B Chain B, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|C Chain C, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|D Chain D, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|G Chain G, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|H Chain H, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|I Chain I, Atpgs Bound E. Coli Clamp Loader Complex
Length = 373
Score = 321 bits (823), Expect = 1e-87, Method: Composition-based stats.
Identities = 159/361 (44%), Positives = 228/361 (63%), Gaps = 6/361 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 65 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML +D + +++A+ E +G ++++ N+ + + +L + P
Sbjct: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299
Query: 680 EILIKDSPNYN-EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
L D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359
Query: 739 Q 739
Sbjct: 360 H 360
>pdb|3GLH|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|L Chain L, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|M Chain M, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|N Chain N, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
Length = 376
Score = 321 bits (823), Expect = 1e-87, Method: Composition-based stats.
Identities = 159/361 (44%), Positives = 228/361 (63%), Gaps = 6/361 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 8 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 67
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 68 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 122
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 123 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 182
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 183 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 242
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML +D + +++A+ E +G ++++ N+ + + +L + P
Sbjct: 243 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 302
Query: 680 EILIKDSPNYN-EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
L D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 303 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 362
Query: 739 Q 739
Sbjct: 363 H 363
>pdb|3GLF|B Chain B, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|C Chain C, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|D Chain D, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|G Chain G, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|H Chain H, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|I Chain I, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLI|B Chain B, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|C Chain C, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|D Chain D, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|G Chain G, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|H Chain H, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|I Chain I, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 395
Score = 321 bits (823), Expect = 1e-87, Method: Composition-based stats.
Identities = 159/361 (44%), Positives = 228/361 (63%), Gaps = 6/361 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 27 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 86
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 87 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 141
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 142 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 201
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 202 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 261
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML +D + +++A+ E +G ++++ N+ + + +L + P
Sbjct: 262 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 321
Query: 680 EILIKDSPNYN-EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
L D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 322 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 381
Query: 739 Q 739
Sbjct: 382 H 382
>pdb|1CJ0|A Chain A, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
pdb|1CJ0|B Chain B, Crystal Structure Of Rabbit Cytosolic Serine
Hydroxymethyltransferase At 2.8 Angstrom Resolution
Length = 470
Score = 320 bits (821), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 246/398 (61%), Gaps = 26/398 (6%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L D ++++II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RYYGG
Sbjct: 12 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 71
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+ ID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+ L +
Sbjct: 72 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 131
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAY 177
GGHLTHG M ++ + +F S+ Y +N IDY ++E A+ PKLIIAG S Y
Sbjct: 132 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 191
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ +D+ R IA +Y M DMAH +GL+ AG P+P +T+TTHK+LRG R G
Sbjct: 192 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 251
Query: 238 FILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFK 282
I ++ + + INSAVFPG+QGGP H IA AVA K+ + P+FK
Sbjct: 252 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 311
Query: 283 IYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICN 342
YQ+QVV N + LS L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I CN
Sbjct: 312 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 371
Query: 343 KNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
KN+ P D + SG+RLG+ A+T+RG E + KV
Sbjct: 372 KNTCPGD-KSALRPSGLRLGTPALTSRGLLEKDFQKVA 408
>pdb|1LS3|B Chain B, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|D Chain D, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|A Chain A, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
pdb|1LS3|C Chain C, Crystal Structure Of The Complex Between Rabbit Cytosolic
Serine Hydroxymethyltransferase And
Triglu-5-Formyl-Tetrahydrofolate
Length = 483
Score = 320 bits (821), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 177/398 (44%), Positives = 246/398 (61%), Gaps = 26/398 (6%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L D ++++II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 84
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+ ID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+ L +
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAY 177
GGHLTHG M ++ + +F S+ Y +N IDY ++E A+ PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ +D+ R IA +Y M DMAH +GL+ AG P+P +T+TTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 238 FILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFK 282
I ++ + + INSAVFPG+QGGP H IA AVA K+ + P+FK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 283 IYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICN 342
YQ+QVV N + LS L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I CN
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 343 KNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
KN+ P D + SG+RLG+ A+T+RG E + KV
Sbjct: 385 KNTCPGD-KSALRPSGLRLGTPALTSRGLLEKDFQKVA 421
>pdb|3GLG|B Chain B, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|C Chain C, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|D Chain D, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|G Chain G, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|H Chain H, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|I Chain I, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
Length = 395
Score = 319 bits (818), Expect = 6e-87, Method: Composition-based stats.
Identities = 158/361 (43%), Positives = 227/361 (62%), Gaps = 6/361 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 27 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 86
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 87 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 141
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LAT +PQK+P+T+LSRC+QF+LK +
Sbjct: 142 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATADPQKLPVTILSRCLQFHLKALD 201
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 202 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 261
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML +D + +++A+ E +G ++++ N+ + + +L + P
Sbjct: 262 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 321
Query: 680 EILIKDSPNYN-EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
L D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 322 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 381
Query: 739 Q 739
Sbjct: 382 H 382
>pdb|1RVU|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVU|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RVY|A Chain A, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RVY|B Chain B, E75q Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 319 bits (817), Expect = 7e-87, Method: Compositional matrix adjust.
Identities = 176/398 (44%), Positives = 246/398 (61%), Gaps = 26/398 (6%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L D ++++II KE RQ +ELIASEN+ S AV+EA G+ L NKY++GYPG+RYYGG
Sbjct: 25 LKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSQGYPGQRYYGG 84
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+ ID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+ L +
Sbjct: 85 TEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 144
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAY 177
GGHLTHG M ++ + +F S+ Y +N IDY ++E A+ PKLIIAG S Y
Sbjct: 145 GGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTSCY 204
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ +D+ R IA +Y M DMAH +GL+ AG P+P +T+TTHK+LRG R G
Sbjct: 205 SRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCRAG 264
Query: 238 FILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFK 282
I ++ + + INSAVFPG+QGGP H IA AVA K+ + P+FK
Sbjct: 265 MIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFK 324
Query: 283 IYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICN 342
YQ+QVV N + LS L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I CN
Sbjct: 325 EYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 384
Query: 343 KNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
KN+ P D + SG+RLG+ A+T+RG E + KV
Sbjct: 385 KNTCPGD-KSALRPSGLRLGTPALTSRGLLEKDFQKVA 421
>pdb|1BJ4|A Chain A, Recombinant Serine Hydroxymethyltransferase (human)
Length = 470
Score = 318 bits (815), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/398 (44%), Positives = 246/398 (61%), Gaps = 26/398 (6%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L D +++ II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RYYGG
Sbjct: 16 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 75
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+FID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+ L +
Sbjct: 76 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 135
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAY 177
GGHLTHG M ++ + +F S+ Y +N I+Y ++E A+ PKLIIAG S Y
Sbjct: 136 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 195
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ +++ R IA +Y M DMAH +GL+AAG P+P +T+TTHK+LRG R G
Sbjct: 196 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 255
Query: 238 FILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFK 282
I +K K + INSAVFPG+QGGP H IA AVA K+ + +FK
Sbjct: 256 MIFYRKGVKSVDPATGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFK 315
Query: 283 IYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICN 342
+YQ QVV N + LS+ L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I CN
Sbjct: 316 VYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACN 375
Query: 343 KNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
KN+ P D SG+RLG+ A+T+RG E + KV
Sbjct: 376 KNTCPGD-RSALRPSGLRLGTPALTSRGLLEKDFQKVA 412
>pdb|1RV3|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
pdb|1RV4|A Chain A, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV4|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase
pdb|1RV3|B Chain B, E75l Mutant Of Rabbit Cytosolic Serine
Hydroxymethyltransferase, Complex With Glycine
Length = 483
Score = 317 bits (813), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 176/400 (44%), Positives = 246/400 (61%), Gaps = 26/400 (6%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+ L D ++++II KE RQ +ELIASEN+ S AV+EA G+ L NKY+ GYPG+RYY
Sbjct: 23 QPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYY 82
Query: 66 GGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + ID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+ L
Sbjct: 83 GGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 142
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y +N IDY ++E A+ PKLIIAG S
Sbjct: 143 PDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGTS 202
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
YS+ +D+ R IA +Y M DMAH +GL+ AG P+P +T+TTHK+LRG R
Sbjct: 203 CYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCR 262
Query: 236 GGFILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPD 280
G I ++ + + INSAVFPG+QGGP H IA AVA K+ + P+
Sbjct: 263 AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPE 322
Query: 281 FKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANII 340
FK YQ+QVV N + LS L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I
Sbjct: 323 FKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIA 382
Query: 341 CNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
CNKN+ P D + SG+RLG+ A+T+RG E + KV
Sbjct: 383 CNKNTCPGD-KSALRPSGLRLGTPALTSRGLLEKDFQKVA 421
>pdb|1EJI|A Chain A, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|B Chain B, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|C Chain C, Recombinant Serine Hydroxymethyltransferase (Mouse)
pdb|1EJI|D Chain D, Recombinant Serine Hydroxymethyltransferase (Mouse)
Length = 478
Score = 301 bits (770), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 172/401 (42%), Positives = 242/401 (60%), Gaps = 26/401 (6%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
++ L D +++ II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RY
Sbjct: 17 SQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSSLNNKYSEGYPGQRY 76
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG +FID +E + R + ++ + NVQP+SGS AN AV+ +++ P I G+
Sbjct: 77 YGGTEFIDELEXLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIXGLD 136
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGA 174
L +GGHLTHG ++ + +F S Y + + I+Y ++E A PKLIIAG
Sbjct: 137 LPDGGHLTHGFXTDKKKISATSIFFESXPYKVYPETGYINYDQLEENASLFHPKLIIAGT 196
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
S YS+ +D+ R IA + +Y D AH +GL+AAG P+P +T+TTHK+LRG
Sbjct: 197 SCYSRNLDYARLRKIADDNGAYLXADXAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGC 256
Query: 235 RGGFILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279
R G I +K + + INSAVFPG+QGGP H IA AVA K+
Sbjct: 257 RAGXIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAXTT 316
Query: 280 DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339
+FKIYQ QV+ N + LS L + G +IV+GG+ +H+IL DLR+K G AE +LE+ +I
Sbjct: 317 EFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILXDLRSKGTDGGRAEKVLEACSI 376
Query: 340 ICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
CNKN+ P D + SG+RLG+ A+T+RG E + KV
Sbjct: 377 ACNKNTCPGD-KSALRPSGLRLGTPALTSRGLLEEDFQKVA 416
>pdb|1NJG|A Chain A, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJG|B Chain B, Nucleotide-Free Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|A Chain A, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|B Chain B, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|C Chain C, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
pdb|1NJF|D Chain D, Nucleotide Bound Form Of An Isolated E. Coli Clamp Loader
Gamma Subunit
Length = 250
Score = 276 bits (706), Expect = 5e-74, Method: Composition-based stats.
Identities = 129/242 (53%), Positives = 176/242 (72%), Gaps = 5/242 (2%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 72 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 126
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 186
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 187 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 246
Query: 620 ML 621
ML
Sbjct: 247 ML 248
>pdb|1IQP|A Chain A, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|B Chain B, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|C Chain C, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|D Chain D, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|E Chain E, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
pdb|1IQP|F Chain F, Crystal Structure Of The Clamp Loader Small Subunit From
Pyrococcus Furiosus
Length = 327
Score = 92.8 bits (229), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/243 (28%), Positives = 112/243 (46%), Gaps = 28/243 (11%)
Query: 373 ELEIIKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRI 432
E+++++ KYRP + ++GQ HI K L + + + H LF G GVGKTT +
Sbjct: 7 EVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALA 65
Query: 433 LAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI 492
LA+ L +++E++A+ RGIN + + +++
Sbjct: 66 LAREL------------------------FGENWRHNFLELNASDERGINVIREKVKEFA 101
Query: 493 YA-PIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
PI A +KI +DE LT A A+ +T+E ++FIL+ KI + SRC
Sbjct: 102 RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 161
Query: 551 IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE 610
F + + DI L YI E ++ L I A+G MR A+++ QA +
Sbjct: 162 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAAALDK 220
Query: 611 KIT 613
KIT
Sbjct: 221 KIT 223
>pdb|2CHG|A Chain A, Replication Factor C Domains 1 And 2
pdb|2CHG|B Chain B, Replication Factor C Domains 1 And 2
pdb|2CHG|C Chain C, Replication Factor C Domains 1 And 2
pdb|2CHG|D Chain D, Replication Factor C Domains 1 And 2
Length = 226
Score = 76.6 bits (187), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
+ KYRP + ++GQ+ + + L +++K + H LF+G G GKT + LA+ L
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDL-- 62
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMA-QLLEQTIYAPIN- 497
G + DN +IEM+A+ RGI+ + ++ E API
Sbjct: 63 FGENWR-----------------DN-----FIEMNASDERGIDVVRHKIKEFARTAPIGG 100
Query: 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK 557
A +KI +DE LT A A+ +T+E K +FIL+ +I + SRC F K
Sbjct: 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160
Query: 558 MLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALS 599
+ + L I KE +K L + + G R A++
Sbjct: 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAIN 202
>pdb|2CHQ|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHQ|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHQ|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|A Chain A, Replication Factor C Adpnp Complex
pdb|2CHV|B Chain B, Replication Factor C Adpnp Complex
pdb|2CHV|C Chain C, Replication Factor C Adpnp Complex
pdb|2CHV|D Chain D, Replication Factor C Adpnp Complex
pdb|2CHV|E Chain E, Replication Factor C Adpnp Complex
pdb|2CHV|F Chain F, Replication Factor C Adpnp Complex
Length = 319
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 27/222 (12%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
+ KYRP + ++GQ+ + + L +++K + H LF+G G GKT + LA+ L
Sbjct: 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDL-- 62
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMA-QLLEQTIYAPIN- 497
G + DN +IEM+A+ RGI+ + ++ E API
Sbjct: 63 FGENWR-----------------DN-----FIEMNASDERGIDVVRHKIKEFARTAPIGG 100
Query: 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK 557
A +KI +DE LT A A+ +T+E K +FIL+ +I + SRC F K
Sbjct: 101 APFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQSRCAVFRFKP 160
Query: 558 MLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALS 599
+ + L I KE +K L + + G R A++
Sbjct: 161 VPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAIN 202
>pdb|1SXJ|D Chain D, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 353
Score = 70.1 bits (170), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 69/283 (24%), Positives = 120/283 (42%), Gaps = 41/283 (14%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP N + + Q+H L L L H LF G G GKT S ILA
Sbjct: 30 KYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKT--STILA--------- 77
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN----EMAQLLEQTIYAPIN-- 497
+T + G + +I +E++A+ RGI+ ++ T+ P
Sbjct: 78 ----LTKELYGPDLMKSRI--------LELNASDERGISIVREKVKNFARLTVSKPSKHD 125
Query: 498 ------ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI 551
YKI ++DE +T A +A+ +T+E +F L +I + S+C
Sbjct: 126 LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCS 185
Query: 552 QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-- 609
+F K + + ++ L +I +EN+K + L I + G +R ++L A +
Sbjct: 186 KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYL 245
Query: 610 ---EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIAN 649
+ IT ++E+ ++ LI+I++ + D + I N
Sbjct: 246 GDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVN 288
>pdb|3G5S|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Glutathione
Length = 443
Score = 69.3 bits (168), Expect = 1e-11, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 1075
G T L + Q L+Q I G++NA I+R G Y N P L +LE ++ GL+ AG
Sbjct: 276 GFQTGLKWPEQKRLIQXIPGLENAEIVRYGVXHRNTYLNAPRLLGETLEFREAEGLYAAG 335
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT---KGIQEPY 1132
+ G GY E+A+ G LAGLNAA + P P +++ LG LV L T +G Q Y
Sbjct: 336 VLAGVEGYLESAATGFLAGLNAARKALGLPPVAP-PEESXLGGLVRYLATANPEGFQPXY 394
>pdb|3G5Q|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo
pdb|3G5R|A Chain A, Crystal Structure Of Thermus Thermophilus Trmfo In Complex
With Tetrahydrofolate
Length = 443
Score = 68.2 bits (165), Expect = 3e-11, Method: Composition-based stats.
Identities = 47/120 (39%), Positives = 64/120 (53%), Gaps = 5/120 (4%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 1075
G T L + Q L+Q I G++NA I+R G Y N P L +LE ++ GL+ AG
Sbjct: 276 GFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGETLEFREAEGLYAAG 335
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT---KGIQEPY 1132
+ G GY E+A+ G LAGLNAA + P P +++ LG LV L T +G Q Y
Sbjct: 336 VLAGVEGYLESAATGFLAGLNAARKALGLPPVAP-PEESMLGGLVRYLATANPEGFQPMY 394
>pdb|1SXJ|B Chain B, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 323
Score = 64.3 bits (155), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 94/220 (42%), Gaps = 30/220 (13%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++G L + H + +G G+GKTT LA L +G
Sbjct: 14 KYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHEL--LGRS 70
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI----NEMAQLLEQTIYAPINAR 499
G+ +E++A+ RGI N++ ++ ++ P +
Sbjct: 71 YADGV----------------------LELNASDDRGIDVVRNQIKHFAQKKLHLP-PGK 107
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+KI ++DE +T A A+ +T+E +F A + KI + S+C K+
Sbjct: 108 HKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLS 167
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALS 599
D++ L I+ E++K+ L I A+G MR A++
Sbjct: 168 DEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAIN 207
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/219 (22%), Positives = 97/219 (44%), Gaps = 27/219 (12%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + + GQN + ++ +D+ +L H LF G G GKT S I+A G +
Sbjct: 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKT--STIVALAREIYGKN 74
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQ--TIYAPINARYK 501
+ + +E++A+ RGI+ + ++ + + +K
Sbjct: 75 YSNMV----------------------LELNASDDRGIDVVRNQIKDFASTRQIFSKGFK 112
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHH 561
+ ++DE +T+ A NA+ + +E K +F + K+ +LS+C +F + +
Sbjct: 113 LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQE 172
Query: 562 DIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSL 600
I + +L E +K +A + + G MR L++
Sbjct: 173 AIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNV 211
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 55.5 bits (132), Expect = 2e-07, Method: Composition-based stats.
Identities = 52/188 (27%), Positives = 77/188 (40%), Gaps = 38/188 (20%)
Query: 381 LARKYRPSNFNTLIGQNHI---SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
LA + RP N IGQ H+ K L A++ LH L+ G G GKTT++ ++A+
Sbjct: 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILW-GPPGTGKTTLAEVIARYA 74
Query: 438 NCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPIN 497
N +E +A T G+ E+ + +E+
Sbjct: 75 NA------------------------------DVERISAVTSGVKEIREAIERARQNRNA 104
Query: 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPI--TVLSRCIQFNL 555
R I +DEVH +A L +E+ I FI ATTE + +LSR + L
Sbjct: 105 GRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSALLSRARVYLL 162
Query: 556 KKMLHHDI 563
K + DI
Sbjct: 163 KSLSTEDI 170
>pdb|1JR3|E Chain E, Crystal Structure Of The Processivity Clamp Loader Gamma
Complex Of E. Coli Dna Polymerase Iii
pdb|1XXI|E Chain E, Adp Bound E. Coli Clamp Loader Complex
pdb|1XXI|J Chain J, Adp Bound E. Coli Clamp Loader Complex
pdb|1A5T|A Chain A, Crystal Structure Of The Delta Prime Subunit Of The Clamp-
Loader Complex Of Escherichia Coli Dna Polymerase Iii
pdb|3GLF|E Chain E, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLF|J Chain J, Crystal Structure Of The Ecoli Clamp Loader Bound To
Primer-template Dna
pdb|3GLG|E Chain E, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLG|J Chain J, Crystal Structure Of A Mutant (Gammat157a) E. Coli Clamp
Loader Bound To Primer-Template Dna
pdb|3GLH|E Chain E, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|J Chain J, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLH|O Chain O, Crystal Structure Of The E. Coli Clamp Loader Bound To Psi
Peptide
pdb|3GLI|E Chain E, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
pdb|3GLI|J Chain J, Crystal Structure Of The E. Coli Clamp Loader Bound To
Primer-template Dna And Psi Peptide
Length = 334
Score = 55.1 bits (131), Expect = 2e-07, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 8/153 (5%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
+ L+ + R HHA L G+G + L++ L C G+ + CG C C
Sbjct: 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH-----KSCGHCRGCQ 66
Query: 461 KIDNGCFMDYIEM---DAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFN 517
+ G DY + +T G++ + ++ E+ K+ + + +LT A N
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126
Query: 518 AMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
A+LKTLEEPP F LAT EP+++ T+ SRC
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRC 159
>pdb|1XXH|E Chain E, Atpgs Bound E. Coli Clamp Loader Complex
pdb|1XXH|J Chain J, Atpgs Bound E. Coli Clamp Loader Complex
Length = 334
Score = 53.5 bits (127), Expect = 8e-07, Method: Composition-based stats.
Identities = 46/153 (30%), Positives = 71/153 (46%), Gaps = 8/153 (5%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
+ L+ + R HHA L G G + L++ L C G+ + CG C C
Sbjct: 12 EKLVASYQAGRGHHALLIQALPGXGDDALIYALSRYLLCQQPQGH-----KSCGHCRGCQ 66
Query: 461 KIDNGCFMDYIEM---DAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFN 517
G DY + +T G++ + ++ E+ K+ + + +LT A N
Sbjct: 67 LXQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAAN 126
Query: 518 AMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
A+LKTLEEPP F LAT EP+++ T+ SRC
Sbjct: 127 ALLKTLEEPPAETWFFLATREPERLLATLRSRC 159
>pdb|1SXJ|E Chain E, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 354
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 60/253 (23%), Positives = 101/253 (39%), Gaps = 46/253 (18%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKR-LHHAYLFTGTRGVGKTTISRILAKCLNCIGI 442
KYRP + N L ++ L + D+ R L H L+ G G GK T +C+ +
Sbjct: 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLY-GPNGTGKKT------RCMALLES 59
Query: 443 DGNGGITSQPCGKCSVCVKIDNGCFMDY----IEMDAAST-------------------- 478
G+ +KID F+ +E++ S+
Sbjct: 60 IFGPGVYR---------LKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQ 110
Query: 479 ---RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535
+ + +M Q+ Q + RYK +I+E + LT A A+ +T+E+ K I+ I+
Sbjct: 111 ELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMV 170
Query: 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFET-SALNLIATGAQGSM 594
I + S+C+ +I L ++ E I+ ET L IA + G++
Sbjct: 171 CDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNL 230
Query: 595 R-DALSLTDQAIN 606
R L L A+N
Sbjct: 231 RVSLLMLESMALN 243
>pdb|2CUL|A Chain A, Crystal Structure Of The Gida-Related Protein From Thermus
Thermophilus Hb8
Length = 232
Score = 43.5 bits (101), Expect = 9e-04, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 42/82 (51%)
Query: 814 RFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLK 873
++ LE L+LFQ L+++ N+++GV T G + V+L G+FL ++ +G
Sbjct: 75 KYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGV 134
Query: 874 SYSAGRFGDFSTTSLAKRLKEL 895
AGR + S L + L L
Sbjct: 135 VEEAGRLSEASYPDLLEDLSRL 156
>pdb|3PFI|A Chain A, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
pdb|3PFI|B Chain B, 2.7 Angstrom Resolution Crystal Structure Of A Probable
Holliday Junction Dna Helicase (Ruvb) From Campylobacter
Jejuni Subsp. Jejuni Nctc 11168 In Complex With
Adenosine-5'-Diphosphate
Length = 338
Score = 40.8 bits (94), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 386 RPSNFNTLIGQNHISKSL--INALDKKR---LHHAYLFTGTRGVGKTTISRILA 434
RPSNF+ IGQ I K+L A KKR L H LF+G G+GKTT++ I++
Sbjct: 24 RPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDH-ILFSGPAGLGKTTLANIIS 76
>pdb|2GNO|A Chain A, Crystal Structure Of A Dna Polymerase Iii, Gamma
Subunit-Related Protein (Tm0771) From Thermotoga
Maritima Msb8 At 2.00 A Resolution
Length = 305
Score = 40.0 bits (92), Expect = 0.010, Method: Composition-based stats.
Identities = 25/85 (29%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
Query: 469 DYIEMDAASTR-GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP 527
D +E+D GI+++ + + Y+P K ++ + T A NA LK LEEPP
Sbjct: 51 DVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERXTQQAANAFLKALEEPP 110
Query: 528 KYIKFILATTEPQKIPITVLSRCIQ 552
+Y +L T + T+ SR +
Sbjct: 111 EYAVIVLNTRRWHYLLPTIKSRVFR 135
>pdb|2AEU|A Chain A, Mj0158, Apo Form
Length = 374
Score = 38.1 bits (87), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 5/91 (5%)
Query: 159 EYLAKKNKPKL-IIAGASAYSQYIDFERFYHI---AKNINSYFMVDMAHYAGLIAAGEYP 214
E L K +K L II G++ + I+ E F + AKN + VD A A + P
Sbjct: 133 EILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQP 192
Query: 215 NPVPF-ADFITSTTHKSLRGPRGGFILMKKK 244
+ AD + ++T K + GPRGG + KK+
Sbjct: 193 PALKLGADLVVTSTDKLMEGPRGGLLAGKKE 223
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 37.0 bits (84), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 50/118 (42%), Gaps = 28/118 (23%)
Query: 408 DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467
D KR +++F G GVGKT ++R LA+ + G ++ID +
Sbjct: 516 DPKRPIGSFIFLGPTGVGKTELARALAESI---------------FGDEESMIRIDMSEY 560
Query: 468 MDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE 525
M+ ST G QL E+ P Y + ++D + FN +L+ LE+
Sbjct: 561 -----MEKHSTSG----GQLTEKVRRKP----YSVVLLDAIEKAHPDVFNILLQVLED 605
>pdb|2AEV|A Chain A, Mj0158, Nabh4-Reduced Form
Length = 374
Score = 36.2 bits (82), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 159 EYLAKKNKPKL-IIAGASAYSQYIDFERFYHI---AKNINSYFMVDMAHYAGLIAAGEYP 214
E L K +K L II G++ + I+ E F + AKN + VD A A + P
Sbjct: 133 EILNKIDKDTLVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQP 192
Query: 215 NPVPF-ADFITSTTHKSLRGPRGGFILMKKK 244
+ AD + ++T + GPRGG + KK+
Sbjct: 193 PALKLGADLVVTSTDXLMEGPRGGLLAGKKE 223
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 59/149 (39%), Gaps = 38/149 (25%)
Query: 393 LIGQNHISKSLINAL--------DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
++GQ+ +++ +A+ D R ++LF G GVGKT +++ LA L
Sbjct: 560 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL------- 612
Query: 445 NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR--------GINEMAQLLEQTIYAPI 496
++ID +Y+E A S G E QL E P
Sbjct: 613 --------FDTEEAMIRID---MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP- 660
Query: 497 NARYKIYVIDEVHMLTHHAFNAMLKTLEE 525
Y + + DE+ FN +L+ L++
Sbjct: 661 ---YSVILFDEIEKAHPDVFNILLQILDD 686
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 386 RPSNFNTLIGQNHISKSLINALDKKR-----LHHAYLFTGTRGVGKTTISRILAKCLNCI 440
RP + + IGQ ++ K L AL+ + L H L G G+GKTT++ I+A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-LLAGPPGLGKTTLAHIIASELQT- 77
Query: 441 GIDGNGGITSQP 452
N +TS P
Sbjct: 78 ----NIHVTSGP 85
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 386 RPSNFNTLIGQNHISKSLINALDKKR-----LHHAYLFTGTRGVGKTTISRILAKCLNCI 440
RP + + IGQ ++ K L AL+ + L H L G G+GKTT++ I+A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-LLAGPPGLGKTTLAHIIASELQT- 77
Query: 441 GIDGNGGITSQP 452
N +TS P
Sbjct: 78 ----NIHVTSGP 85
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 34.7 bits (78), Expect = 0.38, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 386 RPSNFNTLIGQNHISKSLINALDKKR-----LHHAYLFTGTRGVGKTTISRILAKCLNCI 440
RP + + IGQ ++ K L AL+ + L H L G G+GKTT++ I+A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-LLAGPPGLGKTTLAHIIASELQT- 77
Query: 441 GIDGNGGITSQP 452
N +TS P
Sbjct: 78 ----NIHVTSGP 85
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 34.7 bits (78), Expect = 0.39, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 386 RPSNFNTLIGQNHISKSLINALDKKR-----LHHAYLFTGTRGVGKTTISRILAKCLNCI 440
RP + + IGQ ++ K L AL+ + L H L G G+GKTT++ I+A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-LLAGPPGLGKTTLAHIIASELQT- 77
Query: 441 GIDGNGGITSQP 452
N +TS P
Sbjct: 78 ----NIHVTSGP 85
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 34.7 bits (78), Expect = 0.40, Method: Composition-based stats.
Identities = 25/72 (34%), Positives = 36/72 (50%), Gaps = 11/72 (15%)
Query: 386 RPSNFNTLIGQNHISKSLINALDKKR-----LHHAYLFTGTRGVGKTTISRILAKCLNCI 440
RP + + IGQ ++ K L AL+ + L H L G G+GKTT++ I+A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-LLAGPPGLGKTTLAHIIASELQT- 77
Query: 441 GIDGNGGITSQP 452
N +TS P
Sbjct: 78 ----NIHVTSGP 85
>pdb|3GWP|A Chain A, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.90 A Resolution
pdb|3GWP|B Chain B, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.90 A Resolution
pdb|3GWP|C Chain C, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.90 A Resolution
pdb|3GWP|D Chain D, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.90 A Resolution
Length = 427
Score = 34.3 bits (77), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 84 KIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFN 141
++FN E+A V+PH +G+ A A F L PG+T + + + + + ++ G N
Sbjct: 84 RVFNTESALVRPHFVNGTHALGAALFGNLRPGNTXLSVCGE-----PYDTLHDVIGITEN 138
Query: 142 SICYGLNKKEKIDYKKVEYLAKKNKPKL 169
S G K+ I+YK+V+ L + KP L
Sbjct: 139 S-NXGSLKEFGINYKQVD-LKEDGKPNL 164
>pdb|3I16|A Chain A, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
pdb|3I16|B Chain B, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
pdb|3I16|C Chain C, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
pdb|3I16|D Chain D, Crystal Structure Of Carbon-Sulfur Lyase Involved In
Aluminum Resistance (Yp_878183.1) From Clostridium Novyi
Nt At 2.00 A Resolution
Length = 427
Score = 34.3 bits (77), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 47/88 (53%), Gaps = 9/88 (10%)
Query: 84 KIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFN 141
++FN E+A V+PH +G+ A A F L PG+T + + + + + ++ G N
Sbjct: 84 RVFNTESALVRPHFVNGTHALGAALFGNLRPGNTXLSVCGE-----PYDTLHDVIGITEN 138
Query: 142 SICYGLNKKEKIDYKKVEYLAKKNKPKL 169
S G K+ I+YK+V+ L + KP L
Sbjct: 139 S-NXGSLKEFGINYKQVD-LKEDGKPNL 164
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 33.9 bits (76), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 31/59 (52%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
+L +KYRPS + I ++ + K ++ H L + + G GKTT+++ L +N
Sbjct: 15 ILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN 73
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.9 bits (76), Expect = 0.71, Method: Composition-based stats.
Identities = 70/288 (24%), Positives = 123/288 (42%), Gaps = 54/288 (18%)
Query: 386 RPSNFNTLIGQNHISKSLINALDKKR-----LHHAYLFTGTRGVGKTTISRILAKCLNCI 440
RP + + IGQ ++ K L AL+ + L H L G G+G+TT++ I+A L
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHV-LLAGPPGLGRTTLAHIIASELQT- 77
Query: 441 GIDGNGGITSQPCGKCSVCVKI-DNGCFMDYIEM-DAASTRGINEMAQLLEQTIYAPINA 498
N +TS P V VK D + +E D I+ + + +E+ +Y+ I
Sbjct: 78 ----NIHVTSGP-----VLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIED 128
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
++ ++ +A ++ P + ATT + + SR F +
Sbjct: 129 F-------QIDIMIGKGPSAKSIRIDIQP--FTLVGATTRSGLLSSPLRSR---FGIILE 176
Query: 559 LHHDIVNNLCYILNKE----NIKFETSALNLIATGAQGSMRDALSLTDQA--------IN 606
L V L I+ + +++ E +A +IA ++G+ R A+ LT + +
Sbjct: 177 LDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKAD 236
Query: 607 YSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIY 654
+ I L +M E+L+I D+ L E D ++ +I IEIY
Sbjct: 237 RINTDIVLKTM-EVLNIDDE--------GLDEFDRKILKTI---IEIY 272
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 84/236 (35%), Gaps = 85/236 (36%)
Query: 386 RPSNFNTLIGQNHISKSLINALD-----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
RP + IGQ + + L L+ K+ L H LF G G+GKTT++ ++A L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAHELGV- 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
N +TS P IE ++A +L ++
Sbjct: 65 ----NLRVTSGPA-----------------IEKPG-------DLAAILANSL-----EEG 91
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLE-------------------EPPKYIKFILATTEPQK 541
I IDE+H L+ A + +E E P++ I ATT P
Sbjct: 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF-TLIGATTRPGL 150
Query: 542 IPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597
I +LSR IV +L Y +E AQG MRDA
Sbjct: 151 ITAPLLSR-----------FGIVEHLEYYTPEEL--------------AQGVMRDA 181
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 84/236 (35%), Gaps = 85/236 (36%)
Query: 386 RPSNFNTLIGQNHISKSLINALD-----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
RP + IGQ + + L L+ K+ L H LF G G+GKTT++ ++A L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAHELGV- 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
N +TS P IE ++A +L ++
Sbjct: 65 ----NLRVTSGPA-----------------IEKPG-------DLAAILANSL-----EEG 91
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLE-------------------EPPKYIKFILATTEPQK 541
I IDE+H L+ A + +E E P++ I ATT P
Sbjct: 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF-TLIGATTRPGL 150
Query: 542 IPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597
I +LSR IV +L Y +E AQG MRDA
Sbjct: 151 ITAPLLSR-----------FGIVEHLEYYTPEEL--------------AQGVMRDA 181
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 59/236 (25%), Positives = 84/236 (35%), Gaps = 85/236 (36%)
Query: 386 RPSNFNTLIGQNHISKSLINALD-----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
RP + IGQ + + L L+ K+ L H LF G G+GKTT++ ++A L
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLF-GPPGLGKTTLAHVIAHELGV- 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
N +TS P IE ++A +L ++
Sbjct: 65 ----NLRVTSGPA-----------------IEKPG-------DLAAILANSL-----EEG 91
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLE-------------------EPPKYIKFILATTEPQK 541
I IDE+H L+ A + +E E P++ I ATT P
Sbjct: 92 DILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRF-TLIGATTRPGL 150
Query: 542 IPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597
I +LSR IV +L Y +E AQG MRDA
Sbjct: 151 ITAPLLSR-----------FGIVEHLEYYTPEEL--------------AQGVMRDA 181
>pdb|4F0D|A Chain A, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
pdb|4F0D|B Chain B, Human Artd15PARP16 IN COMPLEX WITH 3-Aminobenzamide
Length = 277
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 2/79 (2%)
Query: 1025 EAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYE 1084
+A+ E +Q + G + + P + E +YF+P N K ETK L +A + +
Sbjct: 100 KAEFEKIQKLTGAPHTPVPAPDFLFEIEYFDPANAK-FYETKGERDLIYAFHGSRLENFH 158
Query: 1085 EAASQGLLAGLN-AALFSQ 1102
GL LN +LF +
Sbjct: 159 SIIHNGLHCHLNKTSLFGE 177
>pdb|3FD0|A Chain A, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_470671.1) From
Listeria Innocua At 2.12 A Resolution
pdb|3FD0|B Chain B, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_470671.1) From
Listeria Innocua At 2.12 A Resolution
Length = 409
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 6/48 (12%)
Query: 72 DLIEKIAINRLKKIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTIM 117
D +E++ +F EAA V+P SG+ A V F +L PGD ++
Sbjct: 62 DTLERV----YASVFKTEAALVRPQIISGTHAISTVLFGILRPGDELL 105
>pdb|3HT4|A Chain A, Crystal Structure Of The Q81a77_baccr Protein From
Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr213
pdb|3HT4|B Chain B, Crystal Structure Of The Q81a77_baccr Protein From
Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr213
pdb|3HT4|C Chain C, Crystal Structure Of The Q81a77_baccr Protein From
Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr213
pdb|3HT4|D Chain D, Crystal Structure Of The Q81a77_baccr Protein From
Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr213
pdb|3HT4|E Chain E, Crystal Structure Of The Q81a77_baccr Protein From
Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr213
pdb|3HT4|F Chain F, Crystal Structure Of The Q81a77_baccr Protein From
Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr213
pdb|3HT4|G Chain G, Crystal Structure Of The Q81a77_baccr Protein From
Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr213
pdb|3HT4|H Chain H, Crystal Structure Of The Q81a77_baccr Protein From
Bacillus Cereus. Northeast Structural Genomics
Consortium Target Bcr213
Length = 431
Score = 32.3 bits (72), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Query: 72 DLIEKIAINRLKKIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTIM 117
D +EK+ +F AEA V+P SG+ A F +L PGD ++
Sbjct: 68 DTLEKV----YADVFGAEAGLVRPQIISGTHAISTALFGILRPGDELL 111
>pdb|3HVY|A Chain A, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_348457.1) From
Clostridium Acetobutylicum At 2.00 A Resolution
pdb|3HVY|B Chain B, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_348457.1) From
Clostridium Acetobutylicum At 2.00 A Resolution
Length = 418
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 85 IFNAEAANVQPH--SGSQANQAVFFSVLNPGDT 115
IFN E+A V+PH +G+ A A F L P DT
Sbjct: 86 IFNTESAFVRPHFVNGTHAIGAALFGNLRPNDT 118
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 31.6 bits (70), Expect = 3.0, Method: Composition-based stats.
Identities = 35/149 (23%), Positives = 60/149 (40%), Gaps = 38/149 (25%)
Query: 393 LIGQNHISKSLINAL--------DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
++GQ+ +++ +A+ D R ++LF G GVGKT +++ LA L D
Sbjct: 16 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL----FDT 71
Query: 445 NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR--------GINEMAQLLEQTIYAPI 496
+ ++ID +Y+E A S G E QL E P
Sbjct: 72 EEAM-----------IRID---MTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEAVRRRP- 116
Query: 497 NARYKIYVIDEVHMLTHHAFNAMLKTLEE 525
Y + + D + FN +L+ L++
Sbjct: 117 ---YSVILFDAIEKAHPDVFNILLQILDD 142
>pdb|3HVY|C Chain C, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_348457.1) From
Clostridium Acetobutylicum At 2.00 A Resolution
Length = 421
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 85 IFNAEAANVQPH--SGSQANQAVFFSVLNPGDT 115
IFN E+A V+PH +G+ A A F L P DT
Sbjct: 85 IFNTESAFVRPHFVNGTHAIGAALFGNLRPNDT 117
>pdb|3HVY|D Chain D, Crystal Structure Of Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Np_348457.1) From
Clostridium Acetobutylicum At 2.00 A Resolution
Length = 424
Score = 31.6 bits (70), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 2/33 (6%)
Query: 85 IFNAEAANVQPH--SGSQANQAVFFSVLNPGDT 115
IFN E+A V+PH +G+ A A F L P DT
Sbjct: 86 IFNTESAFVRPHFVNGTHAIGAALFGNLRPNDT 118
>pdb|3UK6|A Chain A, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|B Chain B, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|C Chain C, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|D Chain D, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|E Chain E, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|F Chain F, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|G Chain G, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|H Chain H, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|I Chain I, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|J Chain J, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|K Chain K, Crystal Structure Of The Tip48 (Tip49b) Hexamer
pdb|3UK6|L Chain L, Crystal Structure Of The Tip48 (Tip49b) Hexamer
Length = 368
Score = 31.2 bits (69), Expect = 3.9, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 48/116 (41%), Gaps = 14/116 (12%)
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE------------PQKIPITVLSR 549
+ IDEVHML +F+ + + LE + I+AT P IPI +L R
Sbjct: 192 VLFIDEVHMLDIESFSFLNRALESDMAPV-LIMATNRGITRIRGTSYQSPHGIPIDLLDR 250
Query: 550 CIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA-TGAQGSMRDALSLTDQA 604
+ + D L +E+++ A ++ G + S+R A+ L A
Sbjct: 251 LLIVSTTPYSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAA 306
>pdb|3JZL|A Chain A, Crystal Structure Of A Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Lmof2365_1314) From
Listeria Monocytogenes Str. 4b F2365 At 1.91 A
Resolution
pdb|3JZL|B Chain B, Crystal Structure Of A Putative Cystathionine Beta-Lyase
Involved In Aluminum Resistance (Lmof2365_1314) From
Listeria Monocytogenes Str. 4b F2365 At 1.91 A
Resolution
Length = 409
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 85 IFNAEAANVQPH--SGSQANQAVFFSVLNPGDTIMGMSLQ 122
+F EAA V+P SG+ A V F +L P D ++ ++ Q
Sbjct: 71 VFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQ 110
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,399,117
Number of Sequences: 62578
Number of extensions: 1604788
Number of successful extensions: 4072
Number of sequences better than 100.0: 101
Number of HSP's better than 100.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 48
Number of HSP's that attempted gapping in prelim test: 3903
Number of HSP's gapped (non-prelim): 110
length of query: 1342
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1231
effective length of database: 8,027,179
effective search space: 9881457349
effective search space used: 9881457349
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)