Query psy13354
Match_columns 1342
No_of_seqs 654 out of 6109
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 17:18:01 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13354.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/13354hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0445 GidA Flavin-dependent 100.0 5E-195 1E-199 1647.3 38.9 566 760-1336 53-619 (621)
2 KOG2311|consensus 100.0 3E-177 7E-182 1458.5 30.8 569 762-1339 79-656 (679)
3 PRK05192 tRNA uridine 5-carbox 100.0 2E-163 5E-168 1466.0 49.1 564 759-1337 52-615 (618)
4 TIGR00136 gidA glucose-inhibit 100.0 1E-158 2E-163 1422.0 48.7 568 759-1334 48-616 (617)
5 PF01134 GIDA: Glucose inhibit 100.0 3.2E-95 7E-100 835.9 22.9 344 760-1105 48-392 (392)
6 TIGR00137 gid_trmFO tRNA:m(5)U 100.0 1.7E-66 3.7E-71 607.8 24.0 298 759-1127 61-387 (433)
7 PRK05335 tRNA (uracil-5-)-meth 100.0 3.3E-62 7.1E-67 566.2 22.4 294 759-1126 63-387 (436)
8 PRK14964 DNA polymerase III su 100.0 1.6E-52 3.5E-57 498.6 40.6 357 380-743 2-359 (491)
9 COG2812 DnaX DNA polymerase II 100.0 3.3E-53 7.2E-58 500.7 33.6 358 378-740 3-362 (515)
10 PRK09111 DNA polymerase III su 100.0 2.6E-52 5.6E-57 511.7 41.9 367 378-744 11-380 (598)
11 PRK06645 DNA polymerase III su 100.0 2.8E-51 6.1E-56 492.6 41.6 366 377-743 7-376 (507)
12 PRK12323 DNA polymerase III su 100.0 1.7E-51 3.7E-56 490.3 38.7 365 378-742 3-367 (700)
13 PRK14951 DNA polymerase III su 100.0 3.9E-51 8.4E-56 499.1 42.2 366 378-743 3-369 (618)
14 PRK07003 DNA polymerase III su 100.0 4.2E-51 9.1E-56 491.6 40.5 360 378-742 3-362 (830)
15 PRK14958 DNA polymerase III su 100.0 3.7E-51 8.1E-56 496.1 39.4 357 378-741 3-359 (509)
16 PRK14965 DNA polymerase III su 100.0 8.2E-51 1.8E-55 502.5 40.4 358 378-740 3-363 (576)
17 PRK14960 DNA polymerase III su 100.0 1.3E-50 2.9E-55 484.1 40.2 361 378-743 2-363 (702)
18 PRK14954 DNA polymerase III su 100.0 1.7E-50 3.6E-55 495.8 41.6 362 378-739 3-374 (620)
19 PRK14952 DNA polymerase III su 100.0 8.3E-50 1.8E-54 486.5 40.9 353 380-737 2-362 (584)
20 PRK08691 DNA polymerase III su 100.0 8.2E-50 1.8E-54 482.9 38.9 362 378-744 3-364 (709)
21 PRK05563 DNA polymerase III su 100.0 2.4E-49 5.2E-54 487.1 43.1 356 378-738 3-360 (559)
22 PRK14955 DNA polymerase III su 100.0 1.3E-49 2.7E-54 474.9 38.7 362 378-739 3-374 (397)
23 PRK14971 DNA polymerase III su 100.0 4.1E-49 8.9E-54 487.5 41.8 357 378-738 4-362 (614)
24 PRK06647 DNA polymerase III su 100.0 5.2E-49 1.1E-53 481.2 40.7 360 378-742 3-362 (563)
25 PRK14969 DNA polymerase III su 100.0 7.9E-49 1.7E-53 479.3 39.4 359 378-741 3-361 (527)
26 PRK07994 DNA polymerase III su 100.0 1.3E-48 2.9E-53 477.1 40.0 359 378-741 3-362 (647)
27 PRK14953 DNA polymerase III su 100.0 5.9E-48 1.3E-52 465.7 40.8 357 378-743 3-359 (486)
28 PRK14961 DNA polymerase III su 100.0 9.2E-48 2E-52 453.9 41.7 357 378-739 3-361 (363)
29 PRK07764 DNA polymerase III su 100.0 5.9E-48 1.3E-52 486.7 41.4 354 379-737 3-364 (824)
30 PRK14956 DNA polymerase III su 100.0 6.1E-48 1.3E-52 452.9 38.5 355 378-737 5-368 (484)
31 PRK14957 DNA polymerase III su 100.0 2.2E-47 4.7E-52 461.0 41.2 359 378-741 3-361 (546)
32 PRK14959 DNA polymerase III su 100.0 3.3E-47 7.2E-52 460.0 40.7 360 378-742 3-366 (624)
33 PRK14949 DNA polymerase III su 100.0 3.7E-47 8.1E-52 466.4 40.1 357 378-742 3-361 (944)
34 PRK06305 DNA polymerase III su 100.0 1.3E-46 2.8E-51 452.1 39.8 346 378-738 4-349 (451)
35 TIGR02397 dnaX_nterm DNA polym 100.0 7.1E-46 1.5E-50 441.3 40.5 353 379-736 2-355 (355)
36 PRK14950 DNA polymerase III su 100.0 5.7E-46 1.2E-50 462.4 41.1 356 379-738 4-361 (585)
37 PRK07133 DNA polymerase III su 100.0 6.8E-46 1.5E-50 454.3 39.1 358 377-745 4-362 (725)
38 COG0112 GlyA Glycine/serine hy 100.0 5.2E-45 1.1E-49 403.8 36.9 375 6-380 5-381 (413)
39 PRK14948 DNA polymerase III su 100.0 4.9E-44 1.1E-48 442.1 41.3 358 378-739 3-363 (620)
40 PRK08451 DNA polymerase III su 100.0 1.5E-43 3.1E-48 425.2 38.8 336 380-741 3-338 (535)
41 PRK14963 DNA polymerase III su 100.0 4.8E-43 1E-47 424.2 40.7 339 380-738 3-341 (504)
42 PRK14970 DNA polymerase III su 100.0 1.9E-42 4.2E-47 412.1 41.6 344 378-738 4-349 (367)
43 PRK05896 DNA polymerase III su 100.0 5.2E-43 1.1E-47 421.4 36.1 353 378-738 3-363 (605)
44 PF00464 SHMT: Serine hydroxym 100.0 4.4E-41 9.5E-46 390.2 31.1 371 9-380 2-396 (399)
45 PRK14962 DNA polymerase III su 100.0 2.2E-40 4.7E-45 398.0 36.9 330 380-737 3-332 (472)
46 PLN02271 serine hydroxymethylt 100.0 6E-40 1.3E-44 387.0 38.0 374 6-380 127-531 (586)
47 PRK13580 serine hydroxymethylt 100.0 5.8E-40 1.3E-44 388.1 35.6 374 6-380 28-436 (493)
48 COG1206 Gid NAD(FAD)-utilizing 100.0 7.1E-39 1.5E-43 343.5 15.8 319 745-1127 51-392 (439)
49 KOG2467|consensus 100.0 1.3E-36 2.9E-41 328.9 31.1 376 4-380 17-417 (477)
50 PLN03226 serine hydroxymethylt 100.0 7.3E-35 1.6E-39 353.3 39.4 374 6-380 13-410 (475)
51 KOG0989|consensus 100.0 4.7E-35 1E-39 314.5 25.6 276 379-672 24-302 (346)
52 PRK13034 serine hydroxymethylt 100.0 1.9E-33 4.1E-38 338.9 39.1 380 1-380 2-383 (416)
53 PLN03025 replication factor C 100.0 1.4E-33 2.9E-38 328.8 34.8 309 379-738 1-312 (319)
54 PRK00440 rfc replication facto 100.0 3.4E-33 7.4E-38 327.5 36.6 310 378-738 4-316 (319)
55 PRK05564 DNA polymerase III su 100.0 3.1E-33 6.7E-38 325.1 34.5 308 388-736 1-311 (313)
56 PRK07940 DNA polymerase III su 100.0 2.7E-32 5.8E-37 321.0 36.8 338 389-737 3-391 (394)
57 PTZ00094 serine hydroxymethylt 100.0 7.4E-32 1.6E-36 329.2 39.0 375 5-380 12-399 (452)
58 PRK08058 DNA polymerase III su 100.0 7.8E-32 1.7E-36 313.6 33.1 320 389-736 3-327 (329)
59 PRK12402 replication factor C 100.0 1.6E-31 3.4E-36 316.0 36.0 326 379-735 3-336 (337)
60 cd00378 SHMT Serine-glycine hy 100.0 3.4E-31 7.3E-36 320.8 39.0 369 11-379 3-375 (402)
61 PRK00011 glyA serine hydroxyme 100.0 4.4E-31 9.5E-36 321.1 39.5 375 5-379 3-379 (416)
62 PRK07993 DNA polymerase III su 100.0 1.1E-30 2.4E-35 302.0 33.7 311 396-738 7-322 (334)
63 PRK06871 DNA polymerase III su 100.0 2.4E-30 5.3E-35 295.4 35.7 311 395-736 6-320 (325)
64 PRK05907 hypothetical protein; 100.0 1.9E-30 4.1E-35 296.3 31.9 294 399-738 6-311 (311)
65 PRK05707 DNA polymerase III su 100.0 4.4E-30 9.6E-35 296.3 34.8 307 403-738 12-324 (328)
66 PRK07914 hypothetical protein; 100.0 3.4E-30 7.4E-35 300.1 32.6 300 411-738 3-316 (320)
67 PRK05629 hypothetical protein; 100.0 5.6E-30 1.2E-34 298.3 33.5 301 411-739 4-317 (318)
68 PRK06964 DNA polymerase III su 100.0 6.3E-29 1.4E-33 285.7 35.7 305 396-737 6-339 (342)
69 KOG0991|consensus 100.0 2.8E-29 6E-34 258.0 24.1 270 377-672 13-285 (333)
70 PRK07452 DNA polymerase III su 100.0 9.9E-29 2.1E-33 290.0 32.4 298 414-738 2-324 (326)
71 PRK07471 DNA polymerase III su 100.0 5.5E-28 1.2E-32 282.5 34.6 333 385-738 13-363 (365)
72 PRK07399 DNA polymerase III su 100.0 2.2E-28 4.7E-33 281.0 29.2 286 389-737 2-312 (314)
73 PRK08487 DNA polymerase III su 100.0 6.8E-28 1.5E-32 281.6 32.6 303 401-737 4-324 (328)
74 PRK06585 holA DNA polymerase I 100.0 1.7E-27 3.7E-32 281.4 35.5 310 402-739 8-338 (343)
75 PRK06090 DNA polymerase III su 100.0 3E-27 6.5E-32 269.4 33.8 301 396-735 8-313 (319)
76 COG2256 MGS1 ATPase related to 100.0 4.9E-27 1.1E-31 262.2 30.7 256 379-667 12-291 (436)
77 PRK09112 DNA polymerase III su 100.0 8.2E-27 1.8E-31 271.3 31.5 219 383-603 15-243 (351)
78 PRK08699 DNA polymerase III su 100.0 1.3E-26 2.9E-31 267.1 32.7 306 394-737 4-319 (325)
79 COG0156 BioF 7-keto-8-aminopel 100.0 7.7E-27 1.7E-31 271.1 27.7 318 28-369 39-374 (388)
80 PHA02544 44 clamp loader, smal 100.0 5.4E-26 1.2E-30 266.0 34.5 294 379-737 9-311 (316)
81 PRK05574 holA DNA polymerase I 100.0 6.3E-26 1.4E-30 268.4 35.0 309 400-737 5-338 (340)
82 PRK08769 DNA polymerase III su 100.0 4E-26 8.7E-31 260.6 31.2 292 396-738 9-309 (319)
83 COG2081 Predicted flavoprotein 100.0 1.9E-29 4E-34 283.8 3.1 255 821-1101 124-407 (408)
84 COG0436 Aspartate/tyrosine/aro 99.9 9.5E-26 2.1E-30 268.4 32.5 324 28-367 29-375 (393)
85 TIGR01128 holA DNA polymerase 99.9 9.9E-25 2.1E-29 253.8 31.7 265 468-736 19-302 (302)
86 PF03486 HI0933_like: HI0933-l 99.9 3.2E-29 6.9E-34 297.3 -6.7 264 812-1096 114-409 (409)
87 PRK05917 DNA polymerase III su 99.9 1.5E-24 3.2E-29 242.1 28.6 269 398-738 4-276 (290)
88 PRK07276 DNA polymerase III su 99.9 8.8E-24 1.9E-28 237.1 31.2 281 395-733 6-290 (290)
89 PRK13342 recombination factor 99.9 1.2E-23 2.7E-28 253.3 33.3 255 380-668 1-273 (413)
90 PF13932 GIDA_assoc_3: GidA as 99.9 1.6E-26 3.4E-31 202.5 5.7 72 1258-1329 1-72 (72)
91 KOG0257|consensus 99.9 3.6E-24 7.9E-29 240.3 25.6 335 4-351 8-386 (420)
92 PRK07132 DNA polymerase III su 99.9 2.3E-23 5E-28 236.2 32.0 292 397-738 2-297 (299)
93 TIGR00678 holB DNA polymerase 99.9 1.3E-24 2.9E-29 234.1 20.0 186 401-597 2-188 (188)
94 PLN02955 8-amino-7-oxononanoat 99.9 9.6E-24 2.1E-28 250.6 28.5 313 29-370 103-446 (476)
95 COG1466 HolA DNA polymerase II 99.9 2.8E-23 6.1E-28 242.9 31.5 310 401-738 4-332 (334)
96 PRK04195 replication factor C 99.9 6.5E-24 1.4E-28 260.5 26.9 256 379-669 2-268 (482)
97 PRK04132 replication factor C 99.9 1.3E-22 2.8E-27 254.8 33.4 273 416-738 567-844 (846)
98 PF13177 DNA_pol3_delta2: DNA 99.9 5.3E-24 1.2E-28 222.3 17.1 159 395-559 1-162 (162)
99 KOG1359|consensus 99.9 1.5E-23 3.2E-28 221.7 20.1 314 28-369 67-396 (417)
100 KOG1360|consensus 99.9 4.5E-23 9.8E-28 226.0 24.5 323 28-372 171-511 (570)
101 PRK13341 recombination factor 99.9 4.3E-23 9.4E-28 258.9 27.9 259 378-669 15-302 (725)
102 TIGR03862 flavo_PP4765 unchara 99.9 2E-25 4.4E-30 260.0 1.8 247 821-1101 99-375 (376)
103 COG0520 csdA Selenocysteine ly 99.9 1.7E-21 3.6E-26 231.6 32.7 322 36-370 31-390 (405)
104 PLN02483 serine palmitoyltrans 99.9 1.1E-21 2.4E-26 240.8 31.6 320 29-370 101-451 (489)
105 COG1168 MalY Bifunctional PLP- 99.9 2.1E-21 4.5E-26 216.2 30.4 320 27-365 25-368 (388)
106 TIGR01822 2am3keto_CoA 2-amino 99.9 9.5E-22 2.1E-26 237.6 29.8 315 32-369 42-373 (393)
107 PRK09276 LL-diaminopimelate am 99.9 1.5E-21 3.2E-26 235.2 30.8 320 28-365 32-370 (385)
108 PRK05818 DNA polymerase III su 99.9 3.6E-22 7.8E-27 217.7 22.3 210 411-636 5-226 (261)
109 TIGR01821 5aminolev_synth 5-am 99.9 1.2E-21 2.6E-26 237.2 29.5 318 30-370 47-381 (402)
110 PRK07681 aspartate aminotransf 99.9 2.5E-21 5.4E-26 234.1 31.9 317 28-365 33-370 (399)
111 KOG2035|consensus 99.9 2.4E-21 5.3E-26 205.2 27.4 326 380-737 2-341 (351)
112 PRK08960 hypothetical protein; 99.9 2.1E-21 4.6E-26 233.8 30.7 322 27-365 32-369 (387)
113 KOG2028|consensus 99.9 3.3E-22 7.1E-27 217.8 21.1 301 376-714 123-463 (554)
114 TIGR00275 flavoprotein, HI0933 99.9 7.1E-25 1.5E-29 263.4 0.2 264 808-1094 106-399 (400)
115 PRK07179 hypothetical protein; 99.9 2.9E-21 6.2E-26 234.2 31.5 316 30-370 56-383 (407)
116 PRK05957 aspartate aminotransf 99.9 3.1E-21 6.7E-26 232.3 30.6 342 5-366 5-367 (389)
117 PRK13392 5-aminolevulinate syn 99.9 2.1E-21 4.6E-26 235.5 28.9 317 30-370 48-382 (410)
118 PRK06108 aspartate aminotransf 99.9 4E-21 8.7E-26 231.3 30.7 320 27-365 24-364 (382)
119 PLN02822 serine palmitoyltrans 99.9 7.1E-21 1.5E-25 233.2 33.1 320 29-369 111-461 (481)
120 PRK09064 5-aminolevulinate syn 99.9 4.4E-21 9.6E-26 232.7 29.8 319 29-370 47-382 (407)
121 PRK12414 putative aminotransfe 99.9 6.3E-21 1.4E-25 229.3 30.8 338 7-365 10-369 (384)
122 PLN00175 aminotransferase fami 99.9 5.3E-21 1.1E-25 231.5 30.2 338 8-365 36-395 (413)
123 cd06451 AGAT_like Alanine-glyo 99.9 8.7E-21 1.9E-25 226.1 30.6 315 31-370 2-342 (356)
124 PRK05942 aspartate aminotransf 99.9 8.6E-21 1.9E-25 229.0 30.8 320 28-365 36-374 (394)
125 TIGR03540 DapC_direct LL-diami 99.9 1.3E-20 2.7E-25 226.9 31.9 319 27-365 29-368 (383)
126 PRK08068 transaminase; Reviewe 99.9 9.8E-21 2.1E-25 228.2 30.5 319 27-365 32-371 (389)
127 PRK13393 5-aminolevulinate syn 99.9 1.1E-20 2.4E-25 229.0 30.2 319 29-370 46-381 (406)
128 PRK07366 succinyldiaminopimela 99.9 1.1E-20 2.4E-25 227.8 30.1 321 27-365 30-372 (388)
129 PRK07337 aminotransferase; Val 99.9 1.5E-20 3.2E-25 226.7 30.6 320 27-365 30-371 (388)
130 PF05496 RuvB_N: Holliday junc 99.9 1E-21 2.2E-26 207.7 17.1 197 378-609 11-230 (233)
131 PRK07682 hypothetical protein; 99.9 1.6E-20 3.4E-25 225.6 29.3 319 27-365 20-358 (378)
132 PRK09082 methionine aminotrans 99.9 1.5E-20 3.2E-25 226.3 29.1 338 7-365 11-371 (386)
133 PRK13238 tnaA tryptophanase/L- 99.9 3.2E-20 6.9E-25 225.4 31.6 326 28-376 37-420 (460)
134 COG0470 HolB ATPase involved i 99.9 1.5E-20 3.1E-25 221.3 27.2 201 391-607 1-206 (325)
135 PRK10874 cysteine sulfinate de 99.9 3.5E-20 7.6E-25 224.5 31.2 325 34-370 26-383 (401)
136 PRK07309 aromatic amino acid a 99.9 3.8E-20 8.2E-25 223.1 30.7 339 7-365 10-370 (391)
137 PRK08912 hypothetical protein; 99.9 2.5E-20 5.3E-25 224.7 29.1 338 8-365 8-368 (387)
138 PRK06290 aspartate aminotransf 99.9 9.2E-20 2E-24 220.2 33.7 316 28-370 45-389 (410)
139 cd06454 KBL_like KBL_like; thi 99.9 3.8E-20 8.3E-25 219.9 29.5 314 31-368 4-334 (349)
140 TIGR00858 bioF 8-amino-7-oxono 99.9 4.7E-20 1E-24 220.0 30.0 317 28-369 17-349 (360)
141 PRK08361 aspartate aminotransf 99.9 3.6E-20 7.8E-25 223.5 28.7 319 27-365 33-372 (391)
142 PLN00145 tyrosine/nicotianamin 99.9 5.2E-20 1.1E-24 223.8 30.1 320 28-365 53-406 (430)
143 PRK06939 2-amino-3-ketobutyrat 99.9 7E-20 1.5E-24 221.7 31.1 318 29-368 44-376 (397)
144 PRK06207 aspartate aminotransf 99.9 7.2E-20 1.6E-24 221.4 30.7 320 28-365 40-384 (405)
145 PLN02187 rooty/superroot1 99.9 6.1E-20 1.3E-24 224.6 30.3 321 28-365 67-420 (462)
146 KOG0990|consensus 99.9 8.4E-21 1.8E-25 206.1 19.9 270 378-671 28-308 (360)
147 PRK08636 aspartate aminotransf 99.9 1.6E-19 3.4E-24 218.6 33.5 321 27-364 33-381 (403)
148 PLN02409 serine--glyoxylate am 99.9 5.9E-20 1.3E-24 221.7 29.3 315 29-368 10-355 (401)
149 TIGR03392 FeS_syn_CsdA cystein 99.9 9.2E-20 2E-24 220.6 31.0 325 34-370 23-380 (398)
150 PRK09147 succinyldiaminopimela 99.9 7.5E-20 1.6E-24 221.1 29.9 337 7-365 4-378 (396)
151 PRK06348 aspartate aminotransf 99.9 1.3E-19 2.8E-24 218.1 31.1 335 9-365 11-367 (384)
152 PRK07777 aminotransferase; Val 99.9 1.3E-19 2.9E-24 218.3 30.9 342 7-365 5-368 (387)
153 PRK07550 hypothetical protein; 99.9 1.2E-19 2.6E-24 218.6 30.4 318 28-366 30-369 (386)
154 PRK05764 aspartate aminotransf 99.9 1.7E-19 3.7E-24 218.0 31.6 344 1-365 1-373 (393)
155 COG1104 NifS Cysteine sulfinat 99.9 9E-20 1.9E-24 208.0 27.1 324 34-370 8-362 (386)
156 PLN02656 tyrosine transaminase 99.9 1.3E-19 2.8E-24 219.6 30.2 321 27-365 31-385 (409)
157 PLN03227 serine palmitoyltrans 99.9 1.2E-19 2.6E-24 217.6 28.9 317 32-370 2-367 (392)
158 PRK05958 8-amino-7-oxononanoat 99.9 2.2E-19 4.7E-24 216.5 31.2 320 27-369 39-371 (385)
159 PRK07683 aminotransferase A; V 99.9 1.7E-19 3.8E-24 217.1 30.0 317 27-365 28-365 (387)
160 PRK09295 bifunctional cysteine 99.9 3E-19 6.6E-24 216.5 32.0 326 33-369 29-388 (406)
161 TIGR02539 SepCysS Sep-tRNA:Cys 99.8 3.6E-19 7.8E-24 212.9 31.5 301 43-364 20-348 (370)
162 PRK09148 aminotransferase; Val 99.8 2.9E-19 6.2E-24 216.3 30.9 318 27-364 30-371 (405)
163 PF00266 Aminotran_5: Aminotra 99.8 9E-19 2E-23 209.9 34.8 327 33-369 5-365 (371)
164 PTZ00377 alanine aminotransfer 99.8 3.2E-19 7E-24 220.3 31.7 312 40-364 90-456 (481)
165 COG0075 Serine-pyruvate aminot 99.8 6.4E-19 1.4E-23 203.0 31.8 312 29-366 6-344 (383)
166 TIGR02326 transamin_PhnW 2-ami 99.8 5.5E-19 1.2E-23 211.2 32.3 311 29-368 4-345 (363)
167 PLN02376 1-aminocyclopropane-1 99.8 1.4E-19 3.1E-24 222.3 27.7 325 28-366 47-420 (496)
168 TIGR03576 pyridox_MJ0158 pyrid 99.8 5.8E-19 1.3E-23 207.7 31.1 292 35-367 26-328 (346)
169 PRK06107 aspartate aminotransf 99.8 3.3E-19 7.1E-24 215.8 29.4 316 27-365 33-382 (402)
170 PTZ00433 tyrosine aminotransfe 99.8 6.6E-19 1.4E-23 213.7 31.8 320 26-365 32-390 (412)
171 PRK13355 bifunctional HTH-doma 99.8 3.3E-19 7.1E-24 222.1 29.8 318 27-365 146-496 (517)
172 TIGR03538 DapC_gpp succinyldia 99.8 5E-19 1.1E-23 213.7 29.9 317 27-365 28-377 (393)
173 COG0399 WecE Predicted pyridox 99.8 5.5E-19 1.2E-23 204.0 28.6 285 37-348 11-319 (374)
174 cd06453 SufS_like Cysteine des 99.8 8.7E-19 1.9E-23 210.3 31.5 326 33-369 5-363 (373)
175 TIGR01979 sufS cysteine desulf 99.8 8.5E-19 1.9E-23 212.6 31.7 325 34-369 25-385 (403)
176 PLN02450 1-aminocyclopropane-1 99.8 3.1E-19 6.8E-24 218.7 27.8 325 28-366 39-412 (468)
177 PRK02948 cysteine desulfurase; 99.8 3.8E-19 8.2E-24 214.0 27.8 325 33-370 6-359 (381)
178 PRK07590 L,L-diaminopimelate a 99.8 6.9E-19 1.5E-23 213.4 30.0 318 28-364 35-392 (409)
179 PLN00143 tyrosine/nicotianamin 99.8 6.3E-19 1.4E-23 213.5 29.4 320 27-365 32-386 (409)
180 PRK07324 transaminase; Validat 99.8 5.2E-19 1.1E-23 211.6 28.3 310 29-365 28-352 (373)
181 TIGR01976 am_tr_V_VC1184 cyste 99.8 1.3E-18 2.8E-23 210.7 31.8 321 33-369 23-387 (397)
182 TIGR03537 DapC succinyldiamino 99.8 6.5E-19 1.4E-23 209.3 28.2 310 30-364 3-334 (350)
183 PRK06225 aspartate aminotransf 99.8 1.6E-18 3.5E-23 208.4 31.9 315 27-365 28-358 (380)
184 TIGR01265 tyr_nico_aTase tyros 99.8 2.1E-18 4.6E-23 208.8 33.1 320 27-365 31-383 (403)
185 PRK06855 aminotransferase; Val 99.8 8.4E-19 1.8E-23 213.7 29.7 320 28-367 33-412 (433)
186 PRK08175 aminotransferase; Val 99.8 1.4E-18 3E-23 210.0 31.2 318 27-364 29-370 (395)
187 TIGR01825 gly_Cac_T_rel pyrido 99.8 1.1E-18 2.4E-23 210.4 30.2 318 28-369 34-365 (385)
188 cd00617 Tnase_like Tryptophana 99.8 9.9E-19 2.1E-23 209.3 29.3 329 29-380 13-399 (431)
189 TIGR01264 tyr_amTase_E tyrosin 99.8 1.4E-18 3.1E-23 210.3 31.1 317 28-365 32-381 (401)
190 TIGR03235 DNA_S_dndA cysteine 99.8 9.1E-19 2E-23 208.5 28.6 318 34-366 5-341 (353)
191 PRK15481 transcriptional regul 99.8 6.2E-19 1.3E-23 215.4 27.0 284 65-367 117-414 (431)
192 PRK08363 alanine aminotransfer 99.8 1.6E-18 3.4E-23 209.8 29.8 317 28-365 31-376 (398)
193 PRK09331 Sep-tRNA:Cys-tRNA syn 99.8 2.3E-18 5.1E-23 207.1 30.8 301 28-341 19-347 (387)
194 PLN02651 cysteine desulfurase 99.8 1.4E-18 3.1E-23 207.5 28.7 323 33-370 5-361 (364)
195 COG0079 HisC Histidinol-phosph 99.8 7.2E-19 1.6E-23 205.9 25.3 302 28-366 23-338 (356)
196 PLN02855 Bifunctional selenocy 99.8 3E-18 6.4E-23 209.0 31.6 325 34-369 39-402 (424)
197 PLN02231 alanine transaminase 99.8 3.3E-18 7.1E-23 211.5 32.2 324 28-365 130-509 (534)
198 COG1167 ARO8 Transcriptional r 99.8 1.1E-18 2.3E-23 212.8 27.4 295 64-369 127-440 (459)
199 PRK14807 histidinol-phosphate 99.8 3.6E-18 7.8E-23 203.0 30.9 305 28-368 23-338 (351)
200 TIGR01977 am_tr_V_EF2568 cyste 99.8 4E-18 8.6E-23 204.9 31.4 322 38-369 11-363 (376)
201 PLN03026 histidinol-phosphate 99.8 2.5E-18 5.5E-23 206.1 28.4 302 28-365 53-365 (380)
202 PRK04870 histidinol-phosphate 99.8 2.5E-18 5.4E-23 204.9 28.1 303 28-365 27-341 (356)
203 PF00155 Aminotran_1_2: Aminot 99.8 1.4E-18 3E-23 207.8 25.9 284 64-363 39-348 (363)
204 PRK10534 L-threonine aldolase; 99.8 7.6E-19 1.6E-23 207.4 23.3 291 30-344 2-304 (333)
205 PLN02607 1-aminocyclopropane-1 99.8 2.1E-18 4.5E-23 209.8 27.3 323 29-365 49-418 (447)
206 TIGR03301 PhnW-AepZ 2-aminoeth 99.8 1.1E-17 2.4E-22 199.2 32.8 309 32-368 3-340 (355)
207 PRK05387 histidinol-phosphate 99.8 5.7E-18 1.2E-22 201.7 28.7 300 28-364 25-335 (353)
208 PRK13479 2-aminoethylphosphona 99.8 1.9E-17 4.1E-22 198.4 33.3 309 30-368 7-346 (368)
209 PRK09275 aspartate aminotransf 99.8 1.4E-18 3.1E-23 211.4 23.7 312 29-367 102-500 (527)
210 cd06502 TA_like Low-specificit 99.8 1.7E-18 3.8E-23 204.8 23.7 304 33-369 2-325 (338)
211 TIGR03402 FeS_nifS cysteine de 99.8 8.4E-18 1.8E-22 202.2 29.1 322 33-370 5-357 (379)
212 TIGR03542 DAPAT_plant LL-diami 99.8 1.3E-17 2.8E-22 202.0 30.6 318 28-365 34-386 (402)
213 PRK05937 8-amino-7-oxononanoat 99.8 2E-17 4.3E-22 197.9 31.3 308 30-370 6-335 (370)
214 PRK03317 histidinol-phosphate 99.8 7.4E-18 1.6E-22 201.7 27.6 306 28-365 27-347 (368)
215 KOG0259|consensus 99.8 1.4E-17 3.1E-22 183.6 27.1 323 28-368 62-418 (447)
216 PRK09265 aminotransferase AlaT 99.8 2.4E-17 5.2E-22 199.7 31.8 334 7-364 9-382 (404)
217 PRK00080 ruvB Holliday junctio 99.8 2.2E-18 4.8E-23 202.1 21.9 207 381-622 15-248 (328)
218 PLN02672 methionine S-methyltr 99.8 9.4E-18 2E-22 215.3 29.2 313 28-365 698-1062(1082)
219 PRK07865 N-succinyldiaminopime 99.8 2.4E-17 5.1E-22 197.1 30.2 325 3-365 2-350 (364)
220 PRK01533 histidinol-phosphate 99.8 3.5E-18 7.6E-23 203.6 22.8 296 28-368 30-341 (366)
221 PRK03158 histidinol-phosphate 99.8 1.5E-17 3.1E-22 198.6 27.8 300 28-365 30-344 (359)
222 PRK07568 aspartate aminotransf 99.8 3.1E-17 6.6E-22 198.6 30.1 318 28-365 31-374 (397)
223 PRK05839 hypothetical protein; 99.8 2.6E-17 5.7E-22 197.1 28.9 305 28-365 25-356 (374)
224 TIGR03801 asp_4_decarbox aspar 99.8 7.1E-18 1.5E-22 205.1 24.0 315 29-367 96-499 (521)
225 PRK08056 threonine-phosphate d 99.8 1.6E-17 3.5E-22 197.7 26.8 305 27-366 20-339 (356)
226 TIGR03403 nifS_epsilon cystein 99.8 3.4E-17 7.3E-22 197.1 29.6 324 33-370 5-360 (382)
227 PRK02731 histidinol-phosphate 99.8 2.8E-17 6.1E-22 196.8 28.8 303 27-364 32-348 (367)
228 PRK08153 histidinol-phosphate 99.8 3.9E-17 8.5E-22 195.3 29.6 302 29-365 34-348 (369)
229 PRK09105 putative aminotransfe 99.8 3.2E-17 7E-22 195.8 28.7 295 28-365 44-353 (370)
230 cd06452 SepCysS Sep-tRNA:Cys-t 99.8 6.4E-17 1.4E-21 193.1 31.3 268 76-363 47-341 (361)
231 PLN02721 threonine aldolase 99.8 1.7E-17 3.8E-22 197.5 26.3 308 30-368 8-335 (353)
232 TIGR01141 hisC histidinol-phos 99.8 4E-17 8.8E-22 193.8 29.1 301 28-364 20-333 (346)
233 TIGR03539 DapC_actino succinyl 99.8 3.9E-17 8.5E-22 194.5 27.9 311 17-365 11-344 (357)
234 PRK00950 histidinol-phosphate 99.8 2.6E-17 5.7E-22 196.6 26.3 299 28-364 35-344 (361)
235 COG2255 RuvB Holliday junction 99.8 1.1E-17 2.3E-22 179.2 20.1 206 381-621 16-248 (332)
236 PRK13520 L-tyrosine decarboxyl 99.8 1.6E-16 3.4E-21 190.7 32.9 310 32-368 25-354 (371)
237 PRK07908 hypothetical protein; 99.8 1.3E-16 2.8E-21 189.7 31.4 297 27-365 22-330 (349)
238 TIGR01437 selA_rel uncharacter 99.8 1.5E-16 3.2E-21 189.2 31.8 296 36-365 22-346 (363)
239 PRK01688 histidinol-phosphate 99.8 9.7E-18 2.1E-22 199.1 20.9 296 29-365 30-339 (351)
240 PRK06836 aspartate aminotransf 99.8 8.5E-17 1.8E-21 194.2 29.0 310 29-364 35-372 (394)
241 cd00613 GDC-P Glycine cleavage 99.8 7.9E-17 1.7E-21 195.2 28.9 285 68-369 59-388 (398)
242 TIGR02006 IscS cysteine desulf 99.8 3.6E-17 7.8E-22 198.0 25.8 324 33-370 9-362 (402)
243 PRK05166 histidinol-phosphate 99.8 5.7E-17 1.2E-21 194.2 27.2 302 28-366 37-355 (371)
244 cd00616 AHBA_syn 3-amino-5-hyd 99.8 1.5E-16 3.2E-21 189.4 30.4 283 68-368 17-340 (352)
245 PRK14809 histidinol-phosphate 99.8 1.1E-16 2.3E-21 190.9 29.1 298 27-364 30-339 (357)
246 PRK02610 histidinol-phosphate 99.8 6.6E-17 1.4E-21 193.8 27.3 303 28-365 29-354 (374)
247 PF01041 DegT_DnrJ_EryC1: DegT 99.8 9.9E-17 2.1E-21 191.2 28.5 260 68-345 24-310 (363)
248 TIGR03812 tyr_de_CO2_Arch tyro 99.8 3.8E-16 8.3E-21 187.5 33.3 310 32-369 26-360 (373)
249 PRK11658 UDP-4-amino-4-deoxy-L 99.8 2.4E-16 5.3E-21 188.8 31.3 288 37-350 10-329 (379)
250 PRK07392 threonine-phosphate d 99.8 1.9E-16 4.1E-21 189.0 29.4 303 28-367 23-344 (360)
251 PRK14012 cysteine desulfurase; 99.8 7.7E-17 1.7E-21 195.3 25.8 264 34-307 10-290 (404)
252 PLN02368 alanine transaminase 99.8 1.3E-16 2.8E-21 191.6 27.1 252 64-323 102-398 (407)
253 PRK06425 histidinol-phosphate 99.7 1.5E-16 3.2E-21 187.6 25.6 289 28-366 17-317 (332)
254 TIGR00635 ruvB Holliday juncti 99.7 5E-17 1.1E-21 189.4 21.3 201 388-623 1-228 (305)
255 TIGR01814 kynureninase kynuren 99.7 8.1E-16 1.8E-20 186.5 32.2 321 29-369 28-391 (406)
256 TIGR03588 PseC UDP-4-keto-6-de 99.7 9.1E-16 2E-20 184.4 32.1 287 38-348 7-330 (380)
257 cd00609 AAT_like Aspartate ami 99.7 5.5E-16 1.2E-20 183.9 29.9 290 64-366 31-337 (350)
258 KOG1357|consensus 99.7 5.7E-17 1.2E-21 182.3 19.4 318 32-371 140-488 (519)
259 PRK06581 DNA polymerase III su 99.7 2.8E-16 6E-21 166.9 23.5 181 400-603 2-190 (263)
260 cd06450 DOPA_deC_like DOPA dec 99.7 1.2E-16 2.6E-21 189.7 23.2 267 65-367 30-329 (345)
261 PRK03321 putative aminotransfe 99.7 2.3E-16 5E-21 187.8 25.6 298 28-366 23-335 (352)
262 PRK06358 threonine-phosphate d 99.7 4.2E-16 9.2E-21 185.3 27.8 301 29-368 21-341 (354)
263 PRK04635 histidinol-phosphate 99.7 4.7E-16 1E-20 185.1 27.4 296 28-365 32-338 (354)
264 PRK02769 histidine decarboxyla 99.7 1.9E-15 4.1E-20 179.4 31.4 274 70-370 62-357 (380)
265 PRK04781 histidinol-phosphate 99.7 8.2E-16 1.8E-20 183.5 28.0 302 29-366 33-347 (364)
266 KOG2862|consensus 99.7 1.2E-15 2.5E-20 164.2 25.3 309 30-366 19-362 (385)
267 TIGR02902 spore_lonB ATP-depen 99.7 1.1E-16 2.3E-21 197.7 19.8 225 379-624 53-332 (531)
268 PRK09257 aromatic amino acid a 99.7 4.2E-16 9.1E-21 188.4 24.3 309 27-368 26-382 (396)
269 PRK14808 histidinol-phosphate 99.7 1.1E-15 2.4E-20 180.2 27.1 292 27-368 19-323 (335)
270 PLN03032 serine decarboxylase; 99.7 4.5E-15 9.9E-20 174.7 31.7 312 28-370 25-361 (374)
271 PTZ00376 aspartate aminotransf 99.7 4.7E-16 1E-20 188.3 24.1 302 27-343 29-376 (404)
272 PRK09440 avtA valine--pyruvate 99.7 1.1E-15 2.4E-20 186.1 27.0 327 27-365 30-393 (416)
273 TIGR01140 L_thr_O3P_dcar L-thr 99.7 1.1E-15 2.3E-20 180.1 25.8 291 28-367 18-320 (330)
274 TIGR02379 ECA_wecE TDP-4-keto- 99.7 5E-15 1.1E-19 176.6 31.3 287 37-350 7-326 (376)
275 PRK03967 histidinol-phosphate 99.7 1.4E-15 2.9E-20 179.7 26.1 290 28-366 19-318 (337)
276 PLN02397 aspartate transaminas 99.7 5.3E-16 1.2E-20 188.4 23.3 266 64-342 86-393 (423)
277 PRK05664 threonine-phosphate d 99.7 1.6E-15 3.5E-20 178.6 26.3 281 28-365 21-310 (330)
278 TIGR01788 Glu-decarb-GAD gluta 99.7 8.5E-15 1.8E-19 176.1 32.8 320 36-371 50-415 (431)
279 PRK04366 glycine dehydrogenase 99.7 6.2E-15 1.3E-19 181.4 32.0 314 35-370 78-433 (481)
280 PRK07505 hypothetical protein; 99.7 4.6E-15 1E-19 179.7 30.0 315 29-370 48-384 (402)
281 PLN02242 methionine gamma-lyas 99.7 5.6E-16 1.2E-20 186.6 21.6 246 67-338 74-347 (418)
282 PRK15407 lipopolysaccharide bi 99.7 9.4E-15 2E-19 177.1 32.0 260 69-346 63-379 (438)
283 PRK11706 TDP-4-oxo-6-deoxy-D-g 99.7 5.1E-15 1.1E-19 177.3 29.1 261 74-349 32-324 (375)
284 KOG1549|consensus 99.7 2.7E-15 5.8E-20 171.9 24.7 197 33-243 49-257 (428)
285 PRK08354 putative aminotransfe 99.7 6.3E-15 1.4E-19 172.1 28.1 280 28-367 9-297 (311)
286 COG2008 GLY1 Threonine aldolas 99.7 1.5E-15 3.1E-20 170.1 21.4 308 33-369 4-327 (342)
287 KOG0256|consensus 99.7 2.7E-15 5.9E-20 167.2 23.4 290 68-368 120-445 (471)
288 PRK13237 tyrosine phenol-lyase 99.7 1.1E-14 2.4E-19 171.7 29.1 287 37-342 49-382 (460)
289 TIGR02618 tyr_phenol_ly tyrosi 99.7 8E-15 1.7E-19 172.3 27.1 286 37-342 42-375 (450)
290 PLN02880 tyrosine decarboxylas 99.7 8.7E-15 1.9E-19 179.3 28.1 292 67-369 116-467 (490)
291 cd00615 Orn_deC_like Ornithine 99.7 1.2E-15 2.7E-20 176.4 19.7 221 76-300 62-293 (294)
292 PRK03080 phosphoserine aminotr 99.7 5.9E-15 1.3E-19 176.8 25.7 308 29-369 13-357 (378)
293 PLN02590 probable tyrosine dec 99.7 1.5E-14 3.3E-19 176.8 29.5 296 65-370 162-516 (539)
294 PLN02724 Molybdenum cofactor s 99.7 1.9E-14 4.2E-19 187.1 32.2 304 36-345 43-419 (805)
295 COG1223 Predicted ATPase (AAA+ 99.7 1.6E-15 3.4E-20 159.7 16.4 207 383-623 113-354 (368)
296 PRK08637 hypothetical protein; 99.7 1.4E-14 3.1E-19 174.6 26.5 286 65-368 40-370 (388)
297 PLN02263 serine decarboxylase 99.6 1.3E-13 2.8E-18 164.4 33.2 281 70-376 130-434 (470)
298 cd00614 CGS_like CGS_like: Cys 99.6 1.9E-14 4E-19 172.0 25.9 248 67-341 38-310 (369)
299 PRK05355 3-phosphoserine/phosp 99.6 1.8E-14 3.8E-19 170.9 25.0 314 29-369 4-342 (360)
300 PRK05968 hypothetical protein; 99.6 9.4E-15 2E-19 175.2 22.2 217 68-308 62-286 (389)
301 PTZ00112 origin recognition co 99.6 2.5E-14 5.5E-19 174.2 25.6 258 374-636 741-1018(1164)
302 PRK06959 putative threonine-ph 99.6 1.9E-14 4E-19 170.0 23.5 278 28-365 25-315 (339)
303 TIGR01324 cysta_beta_ly_B cyst 99.6 3.9E-14 8.4E-19 168.6 26.3 247 67-339 48-318 (377)
304 KOG1368|consensus 99.6 1.3E-14 2.8E-19 155.3 19.2 298 43-369 38-352 (384)
305 TIGR01328 met_gam_lyase methio 99.6 3.8E-14 8.1E-19 170.0 25.7 249 67-340 57-329 (391)
306 PLN02414 glycine dehydrogenase 99.6 5E-14 1.1E-18 181.3 28.0 285 68-369 563-891 (993)
307 TIGR03799 NOD_PanD_pyr putativ 99.6 1.6E-13 3.4E-18 168.5 31.0 300 66-369 122-508 (522)
308 COG0076 GadB Glutamate decarbo 99.6 1.6E-13 3.5E-18 165.3 30.5 301 31-344 66-403 (460)
309 PRK06234 methionine gamma-lyas 99.6 1.5E-14 3.2E-19 174.1 21.6 214 67-302 62-284 (400)
310 PRK07503 methionine gamma-lyas 99.6 1.6E-14 3.4E-19 174.0 21.4 214 68-303 64-284 (403)
311 PRK08574 cystathionine gamma-s 99.6 1.2E-14 2.7E-19 173.6 19.9 212 67-302 51-269 (385)
312 cd00611 PSAT_like Phosphoserin 99.6 2.6E-14 5.7E-19 169.8 22.1 309 31-369 2-340 (355)
313 PRK07810 O-succinylhomoserine 99.6 7.6E-14 1.7E-18 167.7 26.0 251 67-341 68-344 (403)
314 PRK06767 methionine gamma-lyas 99.6 3.4E-14 7.3E-19 170.5 22.5 233 67-322 59-309 (386)
315 TIGR01364 serC_1 phosphoserine 99.6 1.2E-13 2.6E-18 163.0 26.2 301 39-369 3-332 (349)
316 TIGR00474 selA seryl-tRNA(sec) 99.6 4.7E-13 1E-17 161.5 31.2 289 34-339 88-423 (454)
317 PRK08249 cystathionine gamma-s 99.6 3.2E-14 6.8E-19 170.8 20.3 213 67-303 62-281 (398)
318 PRK08247 cystathionine gamma-s 99.6 2.4E-13 5.3E-18 162.1 27.6 240 67-336 50-299 (366)
319 KOG1969|consensus 99.6 8.8E-14 1.9E-18 165.4 22.7 213 380-621 260-534 (877)
320 PRK08084 DNA replication initi 99.6 3.7E-14 7.9E-19 158.0 18.7 209 379-622 9-234 (235)
321 PRK04311 selenocysteine syntha 99.6 5.3E-13 1.1E-17 161.5 30.0 288 34-339 93-428 (464)
322 PF01276 OKR_DC_1: Orn/Lys/Arg 99.6 5.8E-14 1.3E-18 164.9 20.9 266 75-344 68-400 (417)
323 PRK08133 O-succinylhomoserine 99.6 2.9E-13 6.3E-18 162.4 27.6 247 68-341 60-330 (390)
324 PRK07811 cystathionine gamma-s 99.6 1.9E-13 4.1E-18 164.0 25.8 246 68-340 60-330 (388)
325 PRK08045 cystathionine gamma-s 99.6 3.1E-13 6.7E-18 161.6 27.1 246 68-340 51-321 (386)
326 PRK00451 glycine dehydrogenase 99.6 1.9E-13 4.2E-18 168.0 26.1 281 73-369 112-432 (447)
327 PRK08861 cystathionine gamma-s 99.6 6.5E-14 1.4E-18 166.8 21.1 213 67-303 51-271 (388)
328 cd00610 OAT_like Acetyl ornith 99.6 1.5E-13 3.4E-18 167.3 25.0 317 27-368 36-398 (413)
329 TIGR03531 selenium_SpcS O-phos 99.6 9.3E-13 2E-17 157.6 30.7 232 69-308 101-354 (444)
330 PRK08903 DnaA regulatory inact 99.6 7.1E-14 1.5E-18 155.5 19.6 200 386-623 13-225 (227)
331 PRK07504 O-succinylhomoserine 99.6 1.9E-13 4.2E-18 164.3 24.5 248 68-342 64-336 (398)
332 TIGR00602 rad24 checkpoint pro 99.6 6.7E-14 1.5E-18 172.9 20.9 233 378-622 71-353 (637)
333 PRK06460 hypothetical protein; 99.6 1.1E-13 2.5E-18 165.1 22.0 211 68-302 44-261 (376)
334 TIGR00707 argD acetylornithine 99.6 2.6E-13 5.7E-18 163.3 25.1 309 28-368 28-364 (379)
335 PRK08776 cystathionine gamma-s 99.6 1.2E-13 2.6E-18 166.0 21.7 206 78-303 65-278 (405)
336 TIGR01325 O_suc_HS_sulf O-succ 99.6 1E-13 2.2E-18 166.0 20.9 212 68-303 53-271 (380)
337 PRK09028 cystathionine beta-ly 99.6 7E-14 1.5E-18 166.3 19.1 212 68-303 60-278 (394)
338 PRK06893 DNA replication initi 99.6 6.6E-14 1.4E-18 155.4 17.7 202 386-622 11-228 (229)
339 PRK08727 hypothetical protein; 99.6 9.4E-14 2E-18 154.5 18.8 209 380-623 7-230 (233)
340 PRK07050 cystathionine beta-ly 99.6 2E-13 4.3E-18 163.8 22.2 212 67-302 63-282 (394)
341 TIGR02881 spore_V_K stage V sp 99.6 1.2E-13 2.7E-18 156.7 19.2 190 389-607 4-237 (261)
342 PRK07269 cystathionine gamma-s 99.6 1.7E-13 3.8E-18 162.4 21.2 242 67-339 52-302 (364)
343 PRK08114 cystathionine beta-ly 99.5 5.7E-13 1.2E-17 158.0 25.5 249 66-339 59-333 (395)
344 TIGR02928 orc1/cdc6 family rep 99.5 4.4E-13 9.4E-18 160.5 24.5 241 378-624 5-274 (365)
345 COG1222 RPT1 ATP-dependent 26S 99.5 2E-13 4.3E-18 151.4 19.0 207 383-623 143-391 (406)
346 TIGR02080 O_succ_thio_ly O-suc 99.5 2.4E-13 5.1E-18 162.5 20.5 212 68-303 50-269 (382)
347 PRK07582 cystathionine gamma-l 99.5 7.6E-13 1.7E-17 157.6 24.7 244 67-342 49-317 (366)
348 PRK06702 O-acetylhomoserine am 99.5 2.2E-13 4.7E-18 163.4 19.7 215 67-303 59-311 (432)
349 PRK07049 methionine gamma-lyas 99.5 1.9E-12 4.2E-17 156.7 28.2 249 68-341 82-366 (427)
350 TIGR02903 spore_lon_C ATP-depe 99.5 3.9E-13 8.5E-18 168.6 22.6 228 377-625 140-431 (615)
351 PRK05967 cystathionine beta-ly 99.5 8.3E-13 1.8E-17 156.8 24.1 250 67-340 62-336 (395)
352 TIGR01365 serC_2 phosphoserine 99.5 1.8E-12 3.9E-17 152.8 26.8 311 32-379 7-363 (374)
353 PRK03244 argD acetylornithine 99.5 8.1E-13 1.8E-17 160.1 24.3 293 40-368 61-377 (398)
354 PRK00854 rocD ornithine--oxo-a 99.5 1.6E-12 3.5E-17 157.6 27.0 296 40-369 59-385 (401)
355 TIGR01366 serC_3 phosphoserine 99.5 1.3E-12 2.9E-17 155.2 25.3 309 30-369 5-344 (361)
356 PRK15029 arginine decarboxylas 99.5 2.7E-12 5.8E-17 161.4 29.0 223 75-302 207-464 (755)
357 KOG0634|consensus 99.5 1.2E-12 2.6E-17 147.8 22.7 292 64-368 95-450 (472)
358 KOG0633|consensus 99.5 1E-12 2.3E-17 137.9 20.0 254 97-365 94-360 (375)
359 PF00282 Pyridoxal_deC: Pyrido 99.5 4.4E-12 9.6E-17 150.5 28.2 251 65-320 71-372 (373)
360 PRK12566 glycine dehydrogenase 99.5 3.4E-12 7.3E-17 161.1 28.3 285 68-369 538-860 (954)
361 PLN02509 cystathionine beta-ly 99.5 7E-13 1.5E-17 160.5 21.2 207 75-302 135-349 (464)
362 PRK05939 hypothetical protein; 99.5 4.8E-13 1E-17 160.4 19.7 214 67-303 45-285 (397)
363 TIGR01329 cysta_beta_ly_E cyst 99.5 9.2E-13 2E-17 157.5 22.1 210 68-302 46-263 (378)
364 PRK05367 glycine dehydrogenase 99.5 7.6E-12 1.6E-16 162.4 31.7 320 30-369 502-859 (954)
365 CHL00181 cbbX CbbX; Provisiona 99.5 5.7E-13 1.2E-17 152.1 18.8 190 389-607 21-253 (287)
366 PRK07671 cystathionine beta-ly 99.5 6.9E-13 1.5E-17 158.4 20.2 210 68-302 49-266 (377)
367 PRK08064 cystathionine beta-ly 99.5 1.2E-12 2.6E-17 157.1 21.8 211 68-303 53-271 (390)
368 PRK06620 hypothetical protein; 99.5 7.7E-13 1.7E-17 144.7 17.6 185 389-621 14-213 (214)
369 TIGR00461 gcvP glycine dehydro 99.5 5.4E-12 1.2E-16 160.6 27.7 270 68-347 525-836 (939)
370 COG0626 MetC Cystathionine bet 99.5 1.1E-11 2.3E-16 144.8 27.9 250 67-342 61-335 (396)
371 PRK05093 argD bifunctional N-s 99.5 3.8E-12 8.2E-17 154.3 24.9 298 37-368 55-383 (403)
372 PRK06176 cystathionine gamma-s 99.5 1.7E-12 3.7E-17 155.0 20.7 210 68-302 49-266 (380)
373 PRK08134 O-acetylhomoserine am 99.5 1.2E-12 2.7E-17 158.2 19.5 216 67-303 62-314 (433)
374 PLN02452 phosphoserine transam 99.5 7.5E-12 1.6E-16 147.7 25.5 312 28-368 7-346 (365)
375 PF01053 Cys_Met_Meta_PP: Cys/ 99.5 3.7E-12 8.1E-17 150.8 23.0 248 67-341 53-327 (386)
376 PRK05994 O-acetylhomoserine am 99.5 2.4E-12 5.2E-17 156.0 21.9 214 68-303 62-313 (427)
377 TIGR03420 DnaA_homol_Hda DnaA 99.5 8.3E-13 1.8E-17 147.0 16.4 200 387-621 11-225 (226)
378 PRK06084 O-acetylhomoserine am 99.5 2E-12 4.2E-17 156.4 20.8 214 68-303 57-309 (425)
379 PRK01278 argD acetylornithine 99.5 3.9E-12 8.5E-17 153.6 23.5 299 37-368 46-371 (389)
380 PRK00411 cdc6 cell division co 99.5 3E-12 6.5E-17 154.9 22.3 237 380-624 22-282 (394)
381 PRK06434 cystathionine gamma-l 99.5 6.4E-12 1.4E-16 149.3 24.5 244 67-341 62-324 (384)
382 PF01212 Beta_elim_lyase: Beta 99.5 1.1E-13 2.3E-18 157.9 9.0 260 39-316 7-283 (290)
383 KOG0730|consensus 99.5 3.1E-12 6.6E-17 152.0 21.2 189 385-608 428-652 (693)
384 PRK05613 O-acetylhomoserine am 99.5 1.6E-12 3.4E-17 157.1 19.4 215 68-303 68-323 (437)
385 KOG1358|consensus 99.5 1.1E-12 2.5E-17 145.6 16.3 328 28-380 94-456 (467)
386 TIGR02639 ClpA ATP-dependent C 99.4 2.7E-12 5.7E-17 165.6 22.1 219 379-623 170-428 (731)
387 PRK07812 O-acetylhomoserine am 99.4 1.6E-12 3.5E-17 156.9 18.7 214 68-303 68-318 (436)
388 PRK04073 rocD ornithine--oxo-a 99.4 1.1E-11 2.4E-16 149.9 26.0 295 37-369 55-381 (396)
389 TIGR02617 tnaA_trp_ase tryptop 99.4 1.4E-11 3.1E-16 143.4 25.2 271 62-342 67-390 (467)
390 CHL00195 ycf46 Ycf46; Provisio 99.4 7.6E-12 1.6E-16 151.6 23.5 203 388-623 225-462 (489)
391 TIGR03246 arg_catab_astC succi 99.4 8.4E-12 1.8E-16 150.8 23.8 306 28-369 36-379 (397)
392 cd01494 AAT_I Aspartate aminot 99.4 2.4E-12 5.2E-17 135.6 16.7 160 78-242 5-170 (170)
393 PRK08248 O-acetylhomoserine am 99.4 3.3E-12 7.2E-17 154.5 19.9 215 67-303 62-314 (431)
394 COG2873 MET17 O-acetylhomoseri 99.4 5E-12 1.1E-16 140.3 19.3 164 58-241 53-223 (426)
395 PRK05642 DNA replication initi 99.4 4E-12 8.6E-17 141.5 18.7 200 389-622 17-233 (234)
396 TIGR01241 FtsH_fam ATP-depende 99.4 4.4E-12 9.5E-17 157.0 20.9 205 385-623 49-294 (495)
397 PRK08485 DNA polymerase III su 99.4 9.1E-13 2E-17 137.0 12.0 129 476-608 34-175 (206)
398 PRK02936 argD acetylornithine 99.4 3.7E-11 7.9E-16 144.6 27.8 294 38-369 45-363 (377)
399 TIGR02880 cbbX_cfxQ probable R 99.4 4.2E-12 9.1E-17 145.2 18.5 188 391-607 22-252 (284)
400 COG4992 ArgD Ornithine/acetylo 99.4 1.9E-11 4.2E-16 139.9 23.5 309 26-368 41-381 (404)
401 PTZ00125 ornithine aminotransf 99.4 3.7E-11 7.9E-16 145.8 27.3 294 39-368 48-378 (400)
402 PF12169 DNA_pol3_gamma3: DNA 99.4 5E-12 1.1E-16 129.9 16.3 133 612-744 1-136 (143)
403 PRK14087 dnaA chromosomal repl 99.4 1.2E-11 2.7E-16 149.7 21.8 211 387-623 111-347 (450)
404 PRK02627 acetylornithine amino 99.4 2.8E-11 6E-16 146.7 24.9 295 41-368 58-377 (396)
405 COG1103 Archaea-specific pyrid 99.4 4.1E-11 9E-16 126.8 22.4 261 28-308 16-305 (382)
406 PRK00149 dnaA chromosomal repl 99.4 2.8E-11 6E-16 148.2 24.4 205 389-623 120-348 (450)
407 TIGR01326 OAH_OAS_sulfhy OAH/O 99.4 1.3E-11 2.9E-16 149.5 21.3 157 68-243 56-219 (418)
408 PRK12422 chromosomal replicati 99.4 1.8E-11 3.8E-16 147.8 22.1 208 388-623 108-342 (445)
409 COG1224 TIP49 DNA helicase TIP 99.4 1.7E-11 3.6E-16 135.4 19.6 119 502-621 294-429 (450)
410 PRK09087 hypothetical protein; 99.4 4.5E-12 9.7E-17 139.8 15.4 198 380-623 9-221 (226)
411 PRK14086 dnaA chromosomal repl 99.4 5.7E-11 1.2E-15 144.9 25.9 206 388-622 285-513 (617)
412 PRK12381 bifunctional succinyl 99.4 5.6E-11 1.2E-15 144.1 25.0 295 38-368 55-382 (406)
413 TIGR00362 DnaA chromosomal rep 99.4 2E-11 4.3E-16 147.8 20.6 205 388-622 107-335 (405)
414 TIGR01885 Orn_aminotrans ornit 99.4 1.1E-10 2.3E-15 141.7 27.1 295 39-368 54-385 (401)
415 PTZ00361 26 proteosome regulat 99.4 1.3E-11 2.9E-16 147.3 18.6 209 381-623 173-423 (438)
416 PRK13578 ornithine decarboxyla 99.4 1E-10 2.2E-15 145.7 26.9 227 75-307 176-445 (720)
417 PF03215 Rad17: Rad17 cell cyc 99.4 8.2E-12 1.8E-16 152.1 17.0 218 379-606 7-269 (519)
418 PTZ00454 26S protease regulato 99.4 1.8E-11 3.8E-16 145.5 19.3 205 385-623 139-385 (398)
419 PRK12462 phosphoserine aminotr 99.4 1.3E-10 2.7E-15 135.7 25.7 314 28-368 4-345 (364)
420 COG1474 CDC6 Cdc6-related prot 99.4 3.5E-11 7.5E-16 141.3 21.1 248 383-638 12-279 (366)
421 CHL00176 ftsH cell division pr 99.4 2E-11 4.4E-16 152.5 20.3 203 387-623 179-422 (638)
422 PF06144 DNA_pol3_delta: DNA p 99.3 6E-12 1.3E-16 133.7 13.0 164 416-606 1-172 (172)
423 PF06068 TIP49: TIP49 C-termin 99.3 2.7E-11 6E-16 136.8 18.7 102 502-604 281-395 (398)
424 PRK14088 dnaA chromosomal repl 99.3 1.8E-11 3.8E-16 148.3 18.4 207 388-623 102-331 (440)
425 PF06838 Met_gamma_lyase: Meth 99.3 8.9E-11 1.9E-15 131.2 21.9 270 43-335 29-332 (403)
426 PRK03992 proteasome-activating 99.3 2.9E-11 6.3E-16 144.6 19.4 204 386-623 126-371 (389)
427 KOG0734|consensus 99.3 1.7E-11 3.8E-16 140.9 16.3 200 385-619 298-536 (752)
428 PF00308 Bac_DnaA: Bacterial d 99.3 3.7E-11 8.1E-16 132.1 18.1 192 388-608 5-216 (219)
429 TIGR03345 VI_ClpV1 type VI sec 99.3 2.3E-11 5.1E-16 157.6 19.0 204 379-607 175-409 (852)
430 COG2509 Uncharacterized FAD-de 99.3 1.4E-12 3E-17 149.4 6.7 259 811-1101 177-483 (486)
431 PRK15400 lysine decarboxylase 99.3 7.4E-11 1.6E-15 146.8 22.4 221 75-302 197-442 (714)
432 TIGR01243 CDC48 AAA family ATP 99.3 2.2E-11 4.8E-16 157.6 18.7 187 387-607 449-671 (733)
433 PRK15399 lysine decarboxylase 99.3 2E-10 4.3E-15 143.0 26.0 220 75-302 197-442 (713)
434 TIGR03689 pup_AAA proteasome A 99.3 3.9E-11 8.5E-16 145.1 18.8 178 383-580 174-386 (512)
435 KOG0733|consensus 99.3 5.8E-11 1.3E-15 138.9 17.5 176 389-598 188-400 (802)
436 KOG1970|consensus 99.3 1.1E-10 2.4E-15 135.9 18.9 216 379-604 70-319 (634)
437 COG1003 GcvP Glycine cleavage 99.3 3E-10 6.5E-15 128.6 21.5 272 67-351 103-418 (496)
438 TIGR00763 lon ATP-dependent pr 99.3 6.2E-11 1.3E-15 153.8 17.9 198 389-605 317-551 (775)
439 KOG0742|consensus 99.3 1.7E-10 3.6E-15 128.9 18.5 154 389-574 353-531 (630)
440 COG0001 HemL Glutamate-1-semia 99.3 8.7E-10 1.9E-14 127.8 25.2 297 28-344 54-399 (432)
441 TIGR01242 26Sp45 26S proteasom 99.3 1.2E-10 2.7E-15 138.7 18.6 205 385-623 116-362 (364)
442 PRK04260 acetylornithine amino 99.3 1.1E-09 2.4E-14 131.5 26.7 290 40-368 46-360 (375)
443 COG0593 DnaA ATPase involved i 99.2 2.8E-10 6E-15 132.8 20.4 205 389-623 85-312 (408)
444 PRK08117 4-aminobutyrate amino 99.2 1.3E-09 2.7E-14 133.4 27.1 308 38-370 59-414 (433)
445 PLN00144 acetylornithine trans 99.2 1.3E-09 2.9E-14 130.7 26.3 297 37-368 30-363 (382)
446 TIGR00713 hemL glutamate-1-sem 99.2 8.3E-10 1.8E-14 134.8 24.8 261 28-306 49-344 (423)
447 PLN02624 ornithine-delta-amino 99.2 1.7E-09 3.7E-14 133.1 27.5 296 39-369 92-428 (474)
448 PRK11522 putrescine--2-oxoglut 99.2 1.4E-09 3E-14 132.8 26.2 302 37-369 97-435 (459)
449 KOG0733|consensus 99.2 1.2E-10 2.7E-15 136.2 15.6 170 387-589 507-711 (802)
450 TIGR03372 putres_am_tran putre 99.2 3.2E-09 7E-14 128.7 28.6 303 37-369 90-428 (442)
451 KOG1942|consensus 99.2 4.5E-10 9.8E-15 120.6 18.4 119 502-621 299-435 (456)
452 KOG0053|consensus 99.2 2.5E-10 5.3E-15 131.4 17.6 212 67-302 75-294 (409)
453 TIGR03811 tyr_de_CO2_Ent tyros 99.2 4.5E-09 9.8E-14 130.3 30.0 254 65-324 115-505 (608)
454 COG1921 SelA Selenocysteine sy 99.2 7.8E-10 1.7E-14 126.8 21.5 232 34-278 34-271 (395)
455 TIGR03015 pepcterm_ATPase puta 99.2 3.8E-10 8.2E-15 129.2 19.1 222 391-623 23-265 (269)
456 PRK05964 adenosylmethionine--8 99.2 1.4E-09 3.1E-14 132.5 24.5 308 37-369 57-406 (423)
457 PRK04612 argD acetylornithine 99.2 3.2E-09 7E-14 128.1 27.0 302 37-368 55-386 (408)
458 PLN02414 glycine dehydrogenase 99.2 3.1E-09 6.8E-14 137.6 27.9 300 33-369 107-453 (993)
459 PRK00062 glutamate-1-semialdeh 99.2 2.7E-09 5.8E-14 130.1 25.5 294 28-344 51-395 (426)
460 TIGR02030 BchI-ChlI magnesium 99.2 8.8E-10 1.9E-14 127.9 20.1 234 389-627 2-312 (337)
461 PRK11034 clpA ATP-dependent Cl 99.2 7.3E-10 1.6E-14 141.0 21.1 219 381-625 176-434 (758)
462 PRK13407 bchI magnesium chelat 99.2 7.2E-10 1.6E-14 128.3 19.2 234 385-625 2-307 (334)
463 COG1982 LdcC Arginine/lysine/o 99.2 1.4E-09 3E-14 130.1 21.7 263 75-343 72-374 (557)
464 KOG2004|consensus 99.2 1.2E-10 2.7E-15 138.5 11.9 179 391-589 411-624 (906)
465 CHL00095 clpC Clp protease ATP 99.2 4.9E-10 1.1E-14 146.3 18.8 197 391-603 509-776 (821)
466 PRK09792 4-aminobutyrate trans 99.2 4.6E-09 1E-13 127.6 25.9 308 37-368 55-404 (421)
467 PRK11034 clpA ATP-dependent Cl 99.2 4E-10 8.7E-15 143.3 17.0 193 391-603 458-710 (758)
468 PRK05367 glycine dehydrogenase 99.2 4.7E-09 1E-13 136.7 27.2 270 68-369 116-426 (954)
469 PRK03715 argD acetylornithine 99.2 4.5E-09 9.7E-14 126.6 25.1 295 39-369 53-377 (395)
470 COG0466 Lon ATP-dependent Lon 99.1 7.7E-10 1.7E-14 133.1 17.7 193 391-606 323-555 (782)
471 PRK09264 diaminobutyrate--2-ox 99.1 1.1E-08 2.4E-13 124.5 28.1 307 37-369 54-400 (425)
472 PLN00020 ribulose bisphosphate 99.1 4.4E-10 9.4E-15 127.5 14.4 152 410-593 145-331 (413)
473 KOG0737|consensus 99.1 6E-10 1.3E-14 125.0 15.2 187 389-605 90-308 (386)
474 COG3977 Alanine-alpha-ketoisov 99.1 8.6E-09 1.9E-13 111.1 23.0 327 27-368 30-396 (417)
475 TIGR03345 VI_ClpV1 type VI sec 99.1 8.9E-10 1.9E-14 143.1 19.0 199 391-605 566-827 (852)
476 KOG0731|consensus 99.1 1.4E-09 2.9E-14 134.1 19.4 204 385-621 305-550 (774)
477 PRK08088 4-aminobutyrate amino 99.1 1.5E-08 3.3E-13 123.6 28.6 304 38-368 57-406 (425)
478 TIGR02639 ClpA ATP-dependent C 99.1 6.9E-10 1.5E-14 143.4 17.7 195 391-604 454-707 (731)
479 CHL00095 clpC Clp protease ATP 99.1 1.5E-09 3.2E-14 141.9 20.5 202 381-608 169-401 (821)
480 PRK10787 DNA-binding ATP-depen 99.1 1.3E-09 2.7E-14 140.0 19.2 201 392-624 323-582 (784)
481 TIGR02407 ectoine_ectB diamino 99.1 1.1E-08 2.4E-13 123.9 26.4 305 37-369 50-396 (412)
482 PLN02760 4-aminobutyrate:pyruv 99.1 8.7E-09 1.9E-13 127.0 25.8 248 37-302 104-407 (504)
483 PRK08360 4-aminobutyrate amino 99.1 1.3E-08 2.9E-13 124.0 26.9 316 28-369 42-410 (443)
484 PRK14700 recombination factor 99.1 1.3E-09 2.8E-14 121.1 16.3 144 522-667 3-168 (300)
485 KOG0738|consensus 99.1 2.1E-09 4.5E-14 120.3 17.5 194 382-605 203-429 (491)
486 TIGR02442 Cob-chelat-sub cobal 99.1 2.1E-09 4.5E-14 136.3 19.9 227 389-624 2-304 (633)
487 PRK00615 glutamate-1-semialdeh 99.1 2.4E-08 5.2E-13 121.1 28.3 282 37-344 68-399 (433)
488 KOG0739|consensus 99.1 4.8E-10 1E-14 120.8 11.5 181 387-596 129-337 (439)
489 KOG0743|consensus 99.1 1.6E-09 3.5E-14 125.1 16.6 199 387-640 197-435 (457)
490 PF05673 DUF815: Protein of un 99.1 4.7E-09 1E-13 113.7 19.1 190 383-604 19-245 (249)
491 KOG0727|consensus 99.1 2.4E-09 5.2E-14 112.7 16.2 203 386-621 149-393 (408)
492 PRK06777 4-aminobutyrate amino 99.1 2.4E-08 5.2E-13 121.4 27.5 305 37-366 55-402 (421)
493 COG0464 SpoVK ATPases of the A 99.1 2.8E-09 6.1E-14 132.6 19.7 203 388-623 239-482 (494)
494 PRK07986 adenosylmethionine--8 99.1 1.6E-08 3.4E-13 122.6 25.2 291 37-343 58-392 (428)
495 PLN02482 glutamate-1-semialdeh 99.1 4.4E-08 9.6E-13 119.8 29.0 244 37-302 114-387 (474)
496 PRK10733 hflB ATP-dependent me 99.1 3.1E-09 6.8E-14 134.8 19.5 203 385-621 146-389 (644)
497 KOG0728|consensus 99.1 1.8E-09 3.9E-14 113.5 14.1 214 376-623 132-387 (404)
498 PRK07678 aminotransferase; Val 99.1 2.4E-08 5.3E-13 122.1 26.4 312 37-369 62-433 (451)
499 TIGR00700 GABAtrnsam 4-aminobu 99.1 4.7E-08 1E-12 119.1 28.7 315 28-368 34-403 (420)
500 PRK06058 4-aminobutyrate amino 99.1 4E-08 8.7E-13 120.2 27.7 307 37-369 71-426 (443)
No 1
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=5.1e-195 Score=1647.34 Aligned_cols=566 Identities=58% Similarity=0.937 Sum_probs=545.5
Q ss_pred hhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC-
Q psy13354 760 LIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN- 838 (1342)
Q Consensus 760 ~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~- 838 (1342)
.-+|||||||||||+||+++|+++|||||||+|||||||+||||+||.+|+++|++.|+++|||+|+|++|+||+++++
T Consensus 53 ~KG~lvrEIDALGG~Mg~~~D~~~IQ~r~LN~sKGPAVra~RaQaDk~~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~~ 132 (621)
T COG0445 53 GKGHLVREIDALGGLMGKAADKAGIQFRMLNSSKGPAVRAPRAQADKWLYRRAMKNELENQPNLHLLQGEVEDLIVEEGQ 132 (621)
T ss_pred ccceeEEeehhccchHHHhhhhcCCchhhccCCCcchhcchhhhhhHHHHHHHHHHHHhcCCCceehHhhhHHHhhcCCC
Confidence 3479999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFS 918 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~ 918 (1342)
+|+||+|++|..|.|++|||||||||+|+||||...+++||.|+.+|.+|+.+|+++||+++|||||||||++++||||+
T Consensus 133 ~v~GV~t~~G~~~~a~aVVlTTGTFL~G~I~iG~~~~~aGr~ge~~s~~Ls~~L~~lGf~l~RlKTGTPpRi~~~sIDfs 212 (621)
T COG0445 133 RVVGVVTADGPEFHAKAVVLTTGTFLRGKIHIGDTNYSAGRLGEPPSIGLSDRLRELGFKLGRLKTGTPPRIDARSIDFS 212 (621)
T ss_pred eEEEEEeCCCCeeecCEEEEeecccccceEEeccccccCCCCCCccchHHHHHHHhcCcEEeeeccCCCCccCCCccChh
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCCc
Q psy13354 919 KMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKS 998 (1342)
Q Consensus 919 ~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~ 998 (1342)
+++.|+|| .++.+|||.+. ..++|+|||+||||++||++|++|+|+||||+|.|+|+||||||||||||+||++|++
T Consensus 213 ~le~q~gD-~~~~~fs~~~~--~~~~Qi~C~iT~Tn~~TH~iIr~Nl~rSpmysG~Ieg~GPRYCPSIEDKIvrF~dK~~ 289 (621)
T COG0445 213 KLEEQPGD-EPPPVFSFTTE--PHPPQIPCYITYTNEKTHEIIRDNLHRSPMYSGEIEGVGPRYCPSIEDKIVRFADKER 289 (621)
T ss_pred hhccCcCC-CCCCccccCCC--CCccccceeeecCChHHHHHHHHhhhhCchhcccccccCCCCCCCHHHhhccCCCCcc
Confidence 99999999 89999999882 3457999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeeccccc
Q psy13354 999 HHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQIN 1078 (1342)
Q Consensus 999 ~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~ 1078 (1342)
||+||||||++++++|+||+|||||+++|.+|+|+|||||||.|+|||||||||||+|+||++|||||+|+|||||||||
T Consensus 290 HqIFlEPEGl~~~evY~nGlSTSlP~dVQ~~~irsipGlEna~i~rpgYAIEYD~v~p~qL~~tLEtK~I~GLf~AGQIN 369 (621)
T COG0445 290 HQIFLEPEGLDTDEVYPNGLSTSLPEDVQEQIIRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQIN 369 (621)
T ss_pred ceEEecCCCCCCceEecCcccccCCHHHHHHHHHhCcccccceeeccceeeeecccChhhcccchhhceecceEEccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhhh
Q psy13354 1079 GTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIG 1158 (1342)
Q Consensus 1079 g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~~ 1158 (1342)
||||||||||||++||||||++++|++||+|+|++|||||||||||||||+||||||||||||||+||+||||+||||+|
T Consensus 370 GTtGYEEAAaQGliAGiNAal~~~~~~p~il~R~eaYIGVlIDDLvTkGt~EPYRmfTSRAEyRL~LR~DNAd~RLt~~g 449 (621)
T COG0445 370 GTTGYEEAAAQGLIAGINAALKVQGKEPFILRRDEAYIGVLIDDLVTKGTNEPYRMFTSRAEYRLLLREDNADLRLTEIG 449 (621)
T ss_pred CCchhHHHHhhhHHHHHHHHHHhcCCCCcccccCcceeeeEehhhhcCCCCCchhhcchHHHHHHHhhccchhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccCCC
Q psy13354 1159 WKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGK 1238 (1342)
Q Consensus 1159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 1238 (1342)
|++|||+++||++|++|++.+++++++|++++++|++|.. .+......++....+++|+|+||+++|++|.+++|....
T Consensus 450 ~~lGLv~~~r~~~f~~k~~~i~~~~~~L~~~~v~p~~~~~-~~~~~~~~~~~~~~~~~~lL~rpe~~~~~l~~~~~~~~~ 528 (621)
T COG0445 450 RELGLVDDERYERFLKKKENIEEEIERLKSTWVTPSEVAK-ELLALGGQPLKRRSSLYDLLRRPEISYDDLISLFPLPAD 528 (621)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHheecChHHHHH-HHHHhhcCCcccchhHHHHhcCCCCCHHHHHHhCCcccc
Confidence 9999999999999999999999999999999999965544 333333345667789999999999999999999884333
Q ss_pred CCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCCC
Q psy13354 1239 NLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISG 1318 (1342)
Q Consensus 1239 ~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~G 1318 (1342)
+++++.++|||++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.||||||||+|
T Consensus 529 -------~~~~v~eqveieiKY~gYI~rq~~~i~~~~~~e~~~IP~~~Dy~~i~~LS~Ea~~KL~~~rP~tigqAsRIsG 601 (621)
T COG0445 529 -------LDAEVLEQVEIEIKYEGYIKRQQEQIEKLKRLENTKIPEDIDYDKIPGLSNEAREKLNKIRPLTIGQASRISG 601 (621)
T ss_pred -------cCHHHHhHhheehhHHHHHHHHHHHHHHHHHhhcccCCCCcChhhccchhHHHHHHHhhcCCCcHHHhhhcCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhcccc
Q psy13354 1319 VTPAALTLLLIYLKSGFL 1336 (1342)
Q Consensus 1319 v~p~~i~~l~~~~~~~~~ 1336 (1342)
||||||+.|++||+++..
T Consensus 602 itpadI~~Ll~~l~~~~~ 619 (621)
T COG0445 602 VTPADISILLVYLKKGKN 619 (621)
T ss_pred CCHHHHHHHHHHHhhhcc
Confidence 999999999999997654
No 2
>KOG2311|consensus
Probab=100.00 E-value=3.1e-177 Score=1458.46 Aligned_cols=569 Identities=44% Similarity=0.749 Sum_probs=540.7
Q ss_pred hhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCe--
Q psy13354 762 HAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNK-- 839 (1342)
Q Consensus 762 ~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~-- 839 (1342)
+||+||||||||+|+++||.|||||||||+||||||||||||+||++|++.||+.|.++||++|.+++|+||+++++.
T Consensus 79 g~LmrEVDALdGl~~rvcD~s~vq~k~LNrs~GPAVwg~RAQiDR~lYkk~MQkei~st~nL~ire~~V~dliv~~~~~~ 158 (679)
T KOG2311|consen 79 GHLMREVDALDGLCSRVCDQSGVQYKVLNRSKGPAVWGLRAQIDRKLYKKNMQKEISSTPNLEIREGAVADLIVEDPDDG 158 (679)
T ss_pred ceeeeeehhhcchHhhhhhhhhhhHHHhhccCCCcccChHHhhhHHHHHHHHHHHhccCCcchhhhhhhhheeeccCCCC
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998764
Q ss_pred ---EEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccc
Q psy13354 840 ---ILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTID 916 (1342)
Q Consensus 840 ---~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~ 916 (1342)
|.||++.||..++|++|||||||||+|+||||+...++||.|+.+|.+|+++|.++||.++|||||||||+.++|||
T Consensus 159 ~~~~~gV~l~dgt~v~a~~VilTTGTFL~~~I~iGlk~~pAGRiGe~ps~~Lse~l~klGF~~gRLKTGTPpRlak~sIn 238 (679)
T KOG2311|consen 159 HCVVSGVVLVDGTVVYAESVILTTGTFLRGQINIGLKTHPAGRIGEQPSIGLSETLQKLGFELGRLKTGTPPRLAKESIN 238 (679)
T ss_pred ceEEEEEEEecCcEeccceEEEeeccceeeEEeeccccccCccccCCcchHHHHHHHHhCeeeccccCCCCcccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccceeecCCCCCCCcccccCCCCCC--CCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCC
Q psy13354 917 FSKMEEQIGDFDPVPVFSVLGNINLH--PKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFP 994 (1342)
Q Consensus 917 ~~~~~~~~~d~~~~~~f~~~~~~~~~--~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~ 994 (1342)
||+++.|.|| .++.+|||.++.+.. .+|++||+||||+.+|+|+++|||.+|++.+.. +|||||||||+|++||+
T Consensus 239 fS~le~q~gD-~~p~pfSFln~~v~i~~e~ql~cYlt~Tt~~~h~ivr~NLh~~~hv~~~~--~gPRYCPSiEsKilRFp 315 (679)
T KOG2311|consen 239 FSKLERQIGD-EPPIPFSFLNETVWIEPEDQLPCYLTHTTPRVHEIVRKNLHENPHVKETT--IGPRYCPSIESKILRFP 315 (679)
T ss_pred hHHhhhhcCC-CCCCceeccCCccccChhccCccccccCcHHHHHHHHhhhccCccccccc--cCCccCCcHHHHHhcCc
Confidence 9999999999 999999999987543 368999999999999999999999999998655 59999999999999999
Q ss_pred CCCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeec
Q psy13354 995 KKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFA 1074 (1342)
Q Consensus 995 ~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~a 1074 (1342)
+| .|++||||||++.+.|||||+|++||+++|.+|+|+|||||||.|.+|||.|+||||||+||++|||||+|+|||||
T Consensus 316 ~k-~HqiwLEpEGlDs~~iYpqG~S~tlpee~Q~~lir~IpGLEn~~i~qP~YgVeYDyv~prQlk~sLeTkkV~GLF~A 394 (679)
T KOG2311|consen 316 DK-SHQIWLEPEGLDSDLIYPQGLSNTLPEELQLQLIRSIPGLENAEILQPGYGVEYDYVDPRQLKPSLETKKVQGLFFA 394 (679)
T ss_pred cc-cceeeecCcCCCCCcccccccccCCCHHHHHHHHHhccCcccceeecccccceecccChHHcchhhhhhhccceEEe
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccc
Q psy13354 1075 GQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRL 1154 (1342)
Q Consensus 1075 Gqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl 1154 (1342)
||||||||||||||||++|||||++.++|++|++++|+|||||||||||||+||+||||||||||||||+||+||||.||
T Consensus 395 GQINGTTGYEEAAAQGIiAGiNA~~~a~~~~~~~v~Rte~yIGvLIDDL~t~g~~EPYRMfTSRsEfRLslR~DNAD~RL 474 (679)
T KOG2311|consen 395 GQINGTTGYEEAAAQGIIAGINASLRASGKPPVVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRSEFRLSLRPDNADSRL 474 (679)
T ss_pred eeecCccchHHHHhhhhHhhhhhhhhhcCCCCeeeecccceeEEEehhhhccCCccchhhhcchhhheeeecCCcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhH-hhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCc-ccccccCHHhhhcCCCCChhhHhcc
Q psy13354 1155 TEIGW-KLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGK-RIKHEYSLSNLLTWPNVNYNTLTSL 1232 (1342)
Q Consensus 1155 ~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~l~~~ 1232 (1342)
||+|| +.|||++.||+.|++++..+++.+++|+++++++.+|.. .++.+..+ ..+....++|+|++.++++++|...
T Consensus 475 T~lg~~~~~l~s~~rw~~fq~~k~~l~~~~~~lk~~k~s~~~w~~-l~~ia~~s~~~~k~~~a~d~l~~~~~d~~~L~~~ 553 (679)
T KOG2311|consen 475 TPLGYKEGGLVSQQRWERFQETKSRLDEGIKRLKEFKLSSQKWKK-LIPIASISTSRSKPVRALDLLKFKDLDLDKLIEC 553 (679)
T ss_pred ccchhhhcCcccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHh-hccccccccccccchhhhhhhccccccHHHHHHh
Confidence 99999 789999999999999999999999999999999999976 33333321 1123446999999999999999999
Q ss_pred cccCCCCCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHh
Q psy13354 1233 KGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQ 1312 (1342)
Q Consensus 1233 ~~~~~~~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~ 1312 (1342)
.|+..+ +..++.+++++++||+||++||.||+++++.++++|++.||+|+||.++++||.|+||||+++||+||||
T Consensus 554 ~p~~~~----~~~~~r~~~erl~Ie~kYe~~i~rq~q~~q~~~~de~~~lP~D~Dy~tm~~lS~E~rekL~~vrP~TIg~ 629 (679)
T KOG2311|consen 554 HPDPLK----NLTIPRELAERLKIEGKYESFIVRQQQEKQGVQRDEALQLPDDLDYLTMRTLSLECREKLHRVRPQTIGA 629 (679)
T ss_pred ccchhh----cccchHHHHhheeeeeeehhHHHHHHHHHHHHhHHhhhcCCcccccccccccCHHHHHHhhhcCchhhhh
Confidence 886222 1236799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCCHHHHHHHHHHHhccccccc
Q psy13354 1313 ASRISGVTPAALTLLLIYLKSGFLKNF 1339 (1342)
Q Consensus 1313 a~ri~Gv~p~~i~~l~~~~~~~~~~~~ 1339 (1342)
|+||+||||++|..|+.|+++.+.++.
T Consensus 630 asRI~GvtpaaI~~Llr~v~~~~~~~s 656 (679)
T KOG2311|consen 630 ASRIQGVTPAAIIRLLRHVKTNQRRQS 656 (679)
T ss_pred hhhcCCCCHHHHHHHHHHhhcchhhhh
Confidence 999999999999999999998665554
No 3
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=100.00 E-value=2.4e-163 Score=1466.04 Aligned_cols=564 Identities=59% Similarity=0.932 Sum_probs=544.6
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN 838 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~ 838 (1342)
...+++++|||++||.|+.++|.+++||++||++||||||++|+|+||..|++.|++.+++++|+++++++|++++.+++
T Consensus 52 ~akg~lvrEidalGg~~g~~~d~~giq~r~ln~skGpAV~s~RaQiDr~ly~kaL~e~L~~~~nV~I~q~~V~~Li~e~g 131 (618)
T PRK05192 52 IAKGHLVREIDALGGEMGKAIDKTGIQFRMLNTSKGPAVRALRAQADRKLYRAAMREILENQPNLDLFQGEVEDLIVENG 131 (618)
T ss_pred chhhHHHHHHHhcCCHHHHHHhhccCceeecccCCCCceeCcHHhcCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEecCC
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFS 918 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~ 918 (1342)
+|.||++.+|..+.|+.||+||||||+|.||||...+++||+|+.+|.+|+.+|+++|+++.||||||||||+++||||+
T Consensus 132 rV~GV~t~dG~~I~Ak~VIlATGTFL~g~i~iG~~~~~~Gr~g~~~a~~L~~~l~~~g~~~~r~ktgtppri~~~sid~~ 211 (618)
T PRK05192 132 RVVGVVTQDGLEFRAKAVVLTTGTFLRGKIHIGEKNYSGGRAGEPPSIGLSESLRELGFELGRLKTGTPPRIDGRSIDFS 211 (618)
T ss_pred EEEEEEECCCCEEECCEEEEeeCcchhcCeEecccccCCCcCccccHHHHHHHHHhcCCccceecCCCCceecCCccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCCc
Q psy13354 919 KMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKS 998 (1342)
Q Consensus 919 ~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~ 998 (1342)
+++.|+|| ..+.+|||++.. ...+|++||+|+||++||++|+.|+|.+|+|+|.|+++|||||||||||++||+++++
T Consensus 212 ~~~~q~~~-~~~~~fs~~~~~-~~~~~~~c~~t~t~~~t~~ii~~~~~~s~~~~g~i~~~gpRYCpsiE~k~~rf~~~~~ 289 (618)
T PRK05192 212 KLEEQPGD-DPPPPFSFMTEK-IHPPQVPCYITYTNEETHEIIRENLHRSPMYSGVIEGVGPRYCPSIEDKIVRFADKDR 289 (618)
T ss_pred hCceecCC-CCCCCCCCCCCC-CCcCeeeCCCCcCcHHHHHHHHhhcccccCcCcccCCCCCCCCCCHHHHhhhcCCCCC
Confidence 99999999 999999998664 3357999999999999999999999999999999999999999999999999999999
Q ss_pred cceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeeccccc
Q psy13354 999 HHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQIN 1078 (1342)
Q Consensus 999 ~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~ 1078 (1342)
||+|||||+++++++|+||+|||||+++|.+|+|+|||||||+|+||||+||||||||+||++|||||.++|||||||||
T Consensus 290 h~v~lepeg~~~~~~y~~G~stslp~~~Q~~~~r~ipGle~a~i~r~gy~ieyd~i~p~~L~~~Le~k~~~~lf~AGQin 369 (618)
T PRK05192 290 HQIFLEPEGLDTNEVYPNGISTSLPEDVQLEMLRSIPGLENAEILRPGYAIEYDYVDPRQLKPTLETKKIKGLFFAGQIN 369 (618)
T ss_pred ceEEEecCCCCCCEEeccCccCCCCHHHHHHHHhcCcCccceeEeecccceeecccChhhcchhheecCCCCeEECcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhhh
Q psy13354 1079 GTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIG 1158 (1342)
Q Consensus 1079 g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~~ 1158 (1342)
||+|||||||||++||+|||++++ ++||+|+|++|||||||||||||||+||||||||||||||+||+||||+|||++|
T Consensus 370 Gt~GYeEaaaqGl~AgiNaa~~~~-~~~~~~~r~~~yiGvliddlvtkg~~EPYRmfTSRaEyRl~lR~DNad~RLt~~g 448 (618)
T PRK05192 370 GTTGYEEAAAQGLIAGINAALKVQ-GEPFILKRSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADLRLTEKG 448 (618)
T ss_pred CChHHHHHHHHHHHHHHHHHHHhc-CCCCCCCcchhhHHHHHHHHHhcCCCcchhhcchhhHHHHHhccccHHhHhHHHH
Confidence 999999999999999999999999 9999999999999999999999999999999999999999999999999999999
Q ss_pred HhhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccCCC
Q psy13354 1159 WKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGK 1238 (1342)
Q Consensus 1159 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~ 1238 (1342)
|++|||+++||+.|++|++.+++++++|++++++|.+|... +..++...+|++++|+||++++++|.+++|....
T Consensus 449 ~~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~~~~~~~~~~~l~~p~~~~~~l~~~~~~~~~ 523 (618)
T PRK05192 449 YELGLVDDERWARFEEKKEAIEEEIERLKSTRVTPDELNEL-----GGDPLKREVSLLDLLRRPEITYEDLAKLDPELAD 523 (618)
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHhh-----cCCcccCCCcHHHHhCCCCCCHHHHHhhcccccc
Confidence 99999999999999999999999999999999999777653 2234566789999999999999999998876554
Q ss_pred CCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCCC
Q psy13354 1239 NLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISG 1318 (1342)
Q Consensus 1239 ~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~G 1318 (1342)
+++++.++++|++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.||||||||||
T Consensus 524 -------~~~~~~~~~~i~~kY~gyi~rq~~~~~~~~~~e~~~ip~~~dy~~i~~ls~E~~~kL~~~~P~t~gqA~ri~G 596 (618)
T PRK05192 524 -------LDPEVAEQVEIEIKYEGYIERQQEEIEKLKRLENKKIPEDIDYDAISGLSNEAREKLNKIRPETIGQASRISG 596 (618)
T ss_pred -------CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhhcCCCCcCCCCcccccchHHHHHHHHHhcCCCCHHHHHhcCC
Confidence 7899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHhccccc
Q psy13354 1319 VTPAALTLLLIYLKSGFLK 1337 (1342)
Q Consensus 1319 v~p~~i~~l~~~~~~~~~~ 1337 (1342)
||||||+.|++||+++...
T Consensus 597 vtpa~i~~l~~~l~~~~~~ 615 (618)
T PRK05192 597 VTPADISILLVYLKKRGRL 615 (618)
T ss_pred CCHHHHHHHHHHHhhhccc
Confidence 9999999999999876543
No 4
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=100.00 E-value=1.1e-158 Score=1422.02 Aligned_cols=568 Identities=58% Similarity=0.927 Sum_probs=543.7
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEe-C
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-T 837 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~-~ 837 (1342)
..-+++++|||+|||.|+.++|.++||||+||.|||||||++|+|+||..|++.|++.++++||+++++++|++++.+ +
T Consensus 48 ~a~g~l~rEidaLGG~~~~~~d~~~i~~r~ln~skgpAV~~~RaQVDr~~y~~~L~e~Le~~pgV~Ile~~Vv~li~e~~ 127 (617)
T TIGR00136 48 PAKGILVKEIDALGGLMGKAADKAGLQFRVLNSSKGPAVRATRAQIDKVLYRKAMRNALENQPNLSLFQGEVEDLILEDN 127 (617)
T ss_pred cccchhhhhhhcccchHHHHHHhhceeheecccCCCCcccccHHhCCHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEecC
Confidence 455689999999999999999999999999999999999999999999999999999999999999999999999987 7
Q ss_pred CeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCcccc
Q psy13354 838 NKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDF 917 (1342)
Q Consensus 838 ~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~ 917 (1342)
+++.||.+.+|..+.|+.||+||||||+|+||||..++++||.|+.+|.+|+++|+++|+++.||||||||||+++||||
T Consensus 128 g~V~GV~t~~G~~I~Ad~VILATGtfL~g~ihig~~~~~~Gr~~~~~a~~l~~~l~~~g~~~~r~ktgtppri~~~sid~ 207 (617)
T TIGR00136 128 DEIKGVVTQDGLKFRAKAVIITTGTFLRGKIHIGDKSYSAGRAGEQPSIGLSTTLRELGFKVGRLKTGTPPRIDKRSIDF 207 (617)
T ss_pred CcEEEEEECCCCEEECCEEEEccCcccCCCEEecccccCCCCCcchhhHHHHHHHHhcCCcccccCCCCCceecCCccCH
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCC
Q psy13354 918 SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKK 997 (1342)
Q Consensus 918 ~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~ 997 (1342)
++++.|+|| ..+.+|||++......+|++||+|+||.+||++|+.|+|.+|+|+|.|+++|||||||||+|++||+++.
T Consensus 208 ~~~~~q~gd-~~~~~fs~~~~~~~~~~~~~C~~t~t~~~~h~ii~~~~~~s~~~~g~i~~~GpRYCpsIe~k~~~f~~~~ 286 (617)
T TIGR00136 208 SKLEVQHGD-NPPPAFSFMNKNFLPLQQLPCYLTHTNPKTHDLIRSNLHRSPMYSGVIEGNGPRYCPSIEDKVVRFADKE 286 (617)
T ss_pred HhcccccCC-CCCCCCCCCCCCCCCCCcccCCcccCcHHHHHHHHhccccccccCcccCCCCCCCCCCHHHHHhhcCCCC
Confidence 999999999 9999999987543334799999999999999999999999999999999999999999999999999999
Q ss_pred ccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeecccc
Q psy13354 998 SHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQI 1077 (1342)
Q Consensus 998 ~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi 1077 (1342)
.|++|||||++++.++|++|+||+||+++|.+++++|||||||+|+||||+||||||||++|++|||||.++||||||||
T Consensus 287 ~h~v~lepe~~~~~~~~~~G~st~lp~~~q~~i~~~ipGle~a~~~r~gy~~e~~~i~p~~l~~~le~k~~~gLf~AGqi 366 (617)
T TIGR00136 287 RHQIFLEPEGLNSDEIYPNGLSTSLPEDVQLQIVRSIPGLENAEILRPGYAIEYDFFDPRQLKPTLETKLIQGLFFAGQI 366 (617)
T ss_pred CceEEEeecCCCCCeEEecCeecCCCHHHHHHHHHcCcCcccceEeccccceEEeEEChhhCchhheeCCCCCeEEcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhh
Q psy13354 1078 NGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEI 1157 (1342)
Q Consensus 1078 ~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~ 1157 (1342)
|||+||+||||||++||+|||++++|++||+|+|++|||||||||||||||+||||||||||||||+||+||||+|||++
T Consensus 367 ~Gt~Gy~eAaa~Gl~Ag~naa~~~~~~~~~~l~r~~~yiGvliddlvtkg~~EPYRmfTSRaE~Rl~lR~dNAd~RL~~~ 446 (617)
T TIGR00136 367 NGTTGYEEAAAQGLMAGINAALKLQNKEPFILKRSEAYIGVLIDDLVTKGTKEPYRMFTSRAEYRLLLREDNADFRLTEI 446 (617)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCCcccchHhHHHHHHHhcCCCcchhhccchhHHHHHhccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccCC
Q psy13354 1158 GWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGING 1237 (1342)
Q Consensus 1158 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~ 1237 (1342)
||++|||+++||+.|++|++.+++++++|++++++|.+.....+...+..++...+|++++|+||++++++|.+++|...
T Consensus 447 g~~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~rp~~~~~~l~~~~~~~~ 526 (617)
T TIGR00136 447 GRELGLIDDERYARFLKKKENIEEEIQRLKSTWLTPSKEVKEELKNHLQSPLKREASGEDLLRRPEMNLEKLTKLTPFLP 526 (617)
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCccHHHHHHHHhhcCCCCCCCccHHHHhCCCCCCHHHHHhhcCCcc
Confidence 99999999999999999999999999999999999965322234333344556788999999999999999999877543
Q ss_pred CCCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCC
Q psy13354 1238 KNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRIS 1317 (1342)
Q Consensus 1238 ~~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~ 1317 (1342)
. +++++.+++|||+||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.|||||||||
T Consensus 527 ~-------~~~~~~~~~~i~~kY~~yi~rq~~~~~~~~~~e~~~ip~~~dy~~i~~ls~E~~ekL~~~rP~tlgqA~ri~ 599 (617)
T TIGR00136 527 A-------LDEEVLEQVEIQIKYEGYIKKQQDEIKKLDRLENVKIPATFDYRKVPGLSTEAREKLSKFRPLSIGQASRIS 599 (617)
T ss_pred c-------CCHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCcCCCCcccccchhHHHHHHHhhcCCCCHHHHhcCC
Confidence 3 688999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcc
Q psy13354 1318 GVTPAALTLLLIYLKSG 1334 (1342)
Q Consensus 1318 Gv~p~~i~~l~~~~~~~ 1334 (1342)
|||||||+.|++||+++
T Consensus 600 Gvtpa~i~~l~~~l~k~ 616 (617)
T TIGR00136 600 GITPADISILLVYLKKQ 616 (617)
T ss_pred CCCHHHHHHHHHHhccC
Confidence 99999999999999875
No 5
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=100.00 E-value=3.2e-95 Score=835.88 Aligned_cols=344 Identities=55% Similarity=0.886 Sum_probs=313.5
Q ss_pred hhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCe
Q psy13354 760 LIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNK 839 (1342)
Q Consensus 760 ~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~ 839 (1342)
.-++|++|||||||.|++++|+++|||||||+|||||||++|+|+||..|+++|++.|+++|||+|++++|++|++++++
T Consensus 48 ~kg~L~~Eidalgg~m~~~aD~~~i~~~~lN~skGpav~a~r~qvDr~~y~~~~~~~l~~~~nl~i~~~~V~~l~~e~~~ 127 (392)
T PF01134_consen 48 AKGHLVREIDALGGLMGRAADETGIHFRMLNRSKGPAVHALRAQVDRDKYSRAMREKLESHPNLTIIQGEVTDLIVENGK 127 (392)
T ss_dssp THHHHHHHHHHTT-SHHHHHHHHEEEEEEESTTS-GGCTEEEEEE-HHHHHHHHHHHHHTSTTEEEEES-EEEEEECTTE
T ss_pred cccchhHHHhhhhhHHHHHHhHhhhhhhcccccCCCCccchHhhccHHHHHHHHHHHHhcCCCeEEEEcccceEEecCCe
Confidence 56899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCcccccc
Q psy13354 840 ILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSK 919 (1342)
Q Consensus 840 ~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~~ 919 (1342)
|+||+|.+|.+|.|++|||||||||+|.+|||...+++||.|+.+|.+|+++|+++|+++.|||||||||++++||||++
T Consensus 128 v~GV~~~~g~~~~a~~vVlaTGtfl~G~~~iG~~~~~~Gr~ge~~s~~l~~~L~~~g~~~~r~ktgtpprv~~~SId~~~ 207 (392)
T PF01134_consen 128 VKGVVTKDGEEIEADAVVLATGTFLNGCIHIGERCPPGGRRGELTSDGLSESLRKLGFELGRFKTGTPPRVDKDSIDFSK 207 (392)
T ss_dssp EEEEEETTSEEEEECEEEE-TTTGBTSEEEETTEEEECSCTTCC-BCHHHHHHHHTTGGEEEEEEEE--EEEGGGS-CTC
T ss_pred EEEEEeCCCCEEecCEEEEecccccCceeeeeecccccCCCccccchHHHHHHHhhCCceEEEecCCCceeccCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCC-CCccccccccCCCCCCcccccccCCCCCc
Q psy13354 920 MEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSP-IFSGKIESIGPRYCPSIEDKVYRFPKKKS 998 (1342)
Q Consensus 920 ~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p-~~~~~~~~~g~r~~~s~~~k~~~~~~~~~ 998 (1342)
++.|+|| ..+.+|||.++.. ..+|++||+|+|++.+|.++++|+|.+| +|+|.|+++|||||||||+|+++|+++++
T Consensus 208 ~~~q~gd-~~~~~fs~~~~~~-~~~q~~~~~t~t~~~~~~~i~~~~~~s~~~~~g~ie~~gpRycpsie~K~v~f~~~~~ 285 (392)
T PF01134_consen 208 LEEQPGD-DKPIPFSYLNCPM-NKEQYPCFITYTNEATHEIIRDNLHRSPDLFEGCIEGIGPRYCPSIEDKPVRFPDRPY 285 (392)
T ss_dssp SEEEE-T-SSTC-SSSSCCST-SHHHHHEEEEEHHHHHHHHHHHTCCG-T-T-TT-CHHCHCCCTTCHHHHHTTSTSTSS
T ss_pred HHhhhcc-CCCCCccccCCcc-cHHHHHHHHHHhhHHHHHHHHhccccCcceecceeEEeccCCccchhcccccccCCCC
Confidence 9999999 9999999998854 4579999999999999999999999999 99999999999999999999999999999
Q ss_pred cceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeeccccc
Q psy13354 999 HHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQIN 1078 (1342)
Q Consensus 999 ~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~ 1078 (1342)
|++|||||+++++++|+||+||+||+++|++++|+|||||||+|+||||+||||||||.+|.+|||+|.++|||||||||
T Consensus 286 h~v~Lepe~~~~~~~y~~G~stslp~~~Q~~~~r~IpGLe~a~~~r~Gy~~ey~~v~~~~l~~~l~~k~~~~lf~AGqi~ 365 (392)
T PF01134_consen 286 HQVFLEPEGLNTNEYYPNGFSTSLPWDVQKRIFRSIPGLENAEILRPGYAHEYDFVDPPQLLNTLETKKIPGLFFAGQIN 365 (392)
T ss_dssp EEEEEEESSTTS-EEEEETS-CSS-HHHHHHHHTTSTTTTT--EEE--EEEEEEEE-GGGBBTTSBBSSSBTEEE-GGGG
T ss_pred EEEEEEecCCCCceEEecCCcCCCCHHHHHHHhhcCCChhcChhhheEEeeeeeEEehhhcccceEECCCCCceECCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchhHHHHHHHHHHHHHHHHHHhCCCC
Q psy13354 1079 GTTGYEEAASQGLLAGLNAALFSQDRD 1105 (1342)
Q Consensus 1079 g~~gy~eA~~~G~~Ag~na~~~~~~~~ 1105 (1342)
||+||+||+|||++||+|||++++|+|
T Consensus 366 G~~Gy~eaaa~G~~ag~na~~~~~g~e 392 (392)
T PF01134_consen 366 GTEGYEEAAAQGLIAGINAARRLQGKE 392 (392)
T ss_dssp TB-SHHHHHHHHHHHHHHHHHHHTTS-
T ss_pred chhHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 999999999999999999999999986
No 6
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=100.00 E-value=1.7e-66 Score=607.85 Aligned_cols=298 Identities=24% Similarity=0.358 Sum_probs=274.8
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN 838 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~ 838 (1342)
+..+.+++||+++|+.|...+|.++| ||++++ |+||.+|++.|++.|+++||+++++.+|++|..
T Consensus 61 ~a~Gil~~ei~~lg~l~~~~ad~~~I----------pagg~~--~vDR~lF~~~L~~qLe~~pnItviq~eV~dL~~--- 125 (433)
T TIGR00137 61 RAAGLLKTEMRQLSSLIITAADRHAV----------PAGGAL--AVDRGIFSRSLTEQVASHPNVTLIREEVTEIPE--- 125 (433)
T ss_pred hccCcHHHHHhhcCeeeeehhhhhCC----------CCCceE--EehHHHHHHHHHHHHHhCCCcEEEeeeeEEEcc---
Confidence 45577899999999999999999999 899877 999999999999999999999999999988851
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHH-cCCCccccccCCCcccccCcccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE-LQLSHGRLKTGTPPRIDKRTIDF 917 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~-~g~~~~~~~~~~~~r~~~~si~~ 917 (1342)
.|.||||||| .++..|+++|++ .|+...+++|||||||+++||||
T Consensus 126 --------------~d~VViATG~--------------------~~s~~La~~L~~~~g~~~~~~~da~~p~i~~~sId~ 171 (433)
T TIGR00137 126 --------------EGITVIATGP--------------------LTSPALSEDLKELTGMDYLYFYDAAAPIVEGDSIDK 171 (433)
T ss_pred --------------CCeEEEeCCC--------------------CccHHHHHHHHHhhCCceEEEecCcCcEEecCCCCc
Confidence 2589999994 678899999999 59999999999999999999999
Q ss_pred ccceeecCCCCCCCcccccCCCCCCCCccccchhhcch--------hHHHHHHhhcccCCCCccccccccCCCCCCccc-
Q psy13354 918 SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNE--------KTHNIIRSEFKNSPIFSGKIESIGPRYCPSIED- 988 (1342)
Q Consensus 918 ~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~--------~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~- 988 (1342)
+++....-. ++ ...+|++||+|+++. ++|+++..|+|.+|+|+| |||||+
T Consensus 172 ~~~~~~~r~----------~~--~~~~yl~cplt~~e~~~f~~~l~~~~~~~~~~~~~~~~~~g---------C~~iE~~ 230 (433)
T TIGR00137 172 EKAFFASRY----------DK--GEAAYLNCPFTEEEYFNFWEALCEAEQVPLKDFEKAKFFEG---------CLPIEEM 230 (433)
T ss_pred ceEEeeccC----------CC--CCcceeeCCcCcccHHHHHHHHHHHhhhhhhccccCcccCC---------CCCHHHH
Confidence 998743211 01 113489999999987 779999999999999986 999999
Q ss_pred -----ccccCCC-C------------CccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEE
Q psy13354 989 -----KVYRFPK-K------------KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIE 1050 (1342)
Q Consensus 989 -----k~~~~~~-~------------~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~ 1050 (1342)
|++||++ | ++|++|||||+++++++|++|+||+||+++|++++|+|||||||+|+||||+|+
T Consensus 231 a~~g~k~~rf~~~kp~gl~~p~~~~~~~~~v~l~~e~~~~~~~~~~G~~t~l~~~~Q~~~~r~ipgle~a~~~r~g~~~~ 310 (433)
T TIGR00137 231 AQRGEKTMLFGPMKPVGLFDPRTGKKPYAVVQLRQEDKAGTLWNMVGFQTNLRWGEQKRVFRLIPGLENAEFVRMGVMHR 310 (433)
T ss_pred hhcCCceEecCCCCccCCCCCCCCCCCceEEEEeccccCCCEEecccccCCCCHHHHHHHHhcCcCccceEEeecceEEe
Confidence 9999998 6 799999999999999999999999999999999999999999999999999999
Q ss_pred eeeeC-ccCccccccccCcCCeeecccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcC
Q psy13354 1051 YDYFN-PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127 (1342)
Q Consensus 1051 ~~~i~-p~~l~~tlesk~~~gL~~aGqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~ 1127 (1342)
||||| |++|++|||+|.++|||||||||||+|||||||||++||+|||++++|++|++++ +++|||||||||+|+.
T Consensus 311 ~~~i~~p~~L~~~l~~k~~~~lf~AGQi~G~~GY~Eaaa~Gl~agina~~~~~~~~~~~~~-~~~~iG~l~~~l~~~~ 387 (433)
T TIGR00137 311 NTFINSPQLLTASLHFKDRQTLFFAGQLTGVEGYVASTAGGWLAGINAARLALGEPLLTLP-AETMMGALFNYISTAS 387 (433)
T ss_pred eeeeCCHHHhhHHhccCCCCCEEECcccccchHHHHHHHHHHHHHHHHHHHHcCCCCCCCC-CcchHHHHHHHHhcCC
Confidence 99999 5999999999999999999999999999999999999999999999999999999 8999999999999974
No 7
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=100.00 E-value=3.3e-62 Score=566.23 Aligned_cols=294 Identities=28% Similarity=0.406 Sum_probs=274.8
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN 838 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~ 838 (1342)
+..+.+.+|++++|+.+..++|.+++ ||++++ |+||..|++.+++.|+++||+++++++|++|. +
T Consensus 63 ~a~Gll~~em~~lgsl~~~aad~~~v----------PA~gaL--vvdR~~~~~~L~~~L~~~pnI~l~~~eV~~l~--~- 127 (436)
T PRK05335 63 NAVGLLKEEMRRLGSLIMEAADAHRV----------PAGGAL--AVDREGFSEYVTEALENHPLITVIREEVTEIP--E- 127 (436)
T ss_pred hcCCchHHHHHHhcchheecccccCC----------CCccce--ecCHHHHHHHHHHHHHcCCCcEEEccchhccc--c-
Confidence 45567889999999999999999988 999988 99999999999999999999999988999985 1
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHc-CCCccccccCCCcccccCcccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKEL-QLSHGRLKTGTPPRIDKRTIDF 917 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~-g~~~~~~~~~~~~r~~~~si~~ 917 (1342)
| .||||||| .+|.+|+++|+++ |++..+|||||||||+++||||
T Consensus 128 ---------~------~viiatG~--------------------~~s~~l~~~l~~~~g~~~~~f~~~~~p~v~~~sid~ 172 (436)
T PRK05335 128 ---------D------ITIIATGP--------------------LTSDALAEAIKALTGEDYLYFFDAAAPIVDKDSIDM 172 (436)
T ss_pred ---------C------CEEEeCCC--------------------CchHHHHHHHHHhcCCccceecCCCCceecCCccCH
Confidence 1 89999994 6899999999997 9999999999999999999999
Q ss_pred ccceeecCCCCCCCcccccCCCCCCCCccccchhh----------cchhHHHHHHhhcccCCCCccccccccCCCCCCcc
Q psy13354 918 SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITH----------TNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIE 987 (1342)
Q Consensus 918 ~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~----------~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~ 987 (1342)
++++.|.+| .... .++++||+|+ ++.+ +++..+++.+|+|+| |||||
T Consensus 173 ~~~~~~~~~-~~~~-----------~~~~~C~~~~~~y~~f~~~l~~~~--~~~~~~~~~~~~f~g---------C~~iE 229 (436)
T PRK05335 173 DKVYLASRY-DKGE-----------ADYLNCPMTKEEYEAFYEALIAAE--KAELKDFEKEKYFEG---------CMPIE 229 (436)
T ss_pred HHceeccCC-CCCC-----------ccceeCCCChHHHhhhHHhhcCHh--HhhhcccccCcccCC---------CCCHH
Confidence 999999999 5422 3589999999 4433 679999999999986 99999
Q ss_pred cccccCCCCCcc-------------------ceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeE
Q psy13354 988 DKVYRFPKKKSH-------------------HIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYA 1048 (1342)
Q Consensus 988 ~k~~~~~~~~~~-------------------~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~ 1048 (1342)
+|+.||.++.+| ++|||||+++++++|++||||+||+++|++++|+|||||+|+|+||||+
T Consensus 230 ~~a~r~~~~~~~gp~kpvgl~~p~~~~~~~a~v~L~~e~~~~~~~~~~Gfqt~l~~~~Q~~~~r~Ipgle~a~~~r~G~~ 309 (436)
T PRK05335 230 VMAERGRETLRFGPMKPVGLTDPRTGKRPYAVVQLRQDNAAGTLYNIVGFQTKLKWGEQKRVFRMIPGLENAEFVRYGVM 309 (436)
T ss_pred HHHhhcccccccCCCCcccccCcccCCCcceEEEEecCCCCCCeEecccccCCCCHHHHHHHHhcccchhceEEEeceEE
Confidence 999999999888 9999999999999999999999999999999999999999999999999
Q ss_pred EEeeeeC-ccCccccccccCcCCeeecccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhc
Q psy13354 1049 IEYDYFN-PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITK 1126 (1342)
Q Consensus 1049 v~~~~i~-p~~l~~tlesk~~~gL~~aGqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~ 1126 (1342)
|+||||| |++|++|||+|.++||||||||+||+||+||++||++||+|||++++|++|++++|+++ ||||||||++.
T Consensus 310 ~~~~~i~~p~~l~~~l~~k~~~~l~~AGqi~g~~Gy~ea~a~G~~Ag~n~~~~~~g~~~~~~~~~~~-iG~l~~~l~~~ 387 (436)
T PRK05335 310 HRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYVESAASGLLAGINAARLALGKEPVIPPPTTA-LGALLNYITGA 387 (436)
T ss_pred eeccccCChhhCchhccccCCCCEEeeeeecCchHHHHHHHHHHHHHHHHHHHhcCCCCCCCCccCc-HHHHHHHHhcC
Confidence 9999999 99999999999999999999999999999999999999999999999999999999999 99999999963
No 8
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.6e-52 Score=498.57 Aligned_cols=357 Identities=37% Similarity=0.620 Sum_probs=337.7
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
-|++||||++|++++||+++++.|.+++..|+++|+|||+||+|+|||++|+.+|+.++|. .+++..||+.|.+|
T Consensus 2 ~la~KyRP~~f~dliGQe~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~-----~~~~~~pCg~C~~C 76 (491)
T PRK14964 2 NLALKYRPSSFKDLVGQDVLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCS-----NGPTSDPCGTCHNC 76 (491)
T ss_pred ChhHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCc-----CCCCCCCccccHHH
Confidence 4899999999999999999999999999999999999999999999999999999999996 35677899999999
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEP 539 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~ 539 (1342)
..+..+.|+|++++|+++..++++++++++.+.+.|+++++||+||||+|+|+.+++|+|+++||+||++++|||+++++
T Consensus 77 ~~i~~~~~~Dv~eidaas~~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIlatte~ 156 (491)
T PRK14964 77 ISIKNSNHPDVIEIDAASNTSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFILATTEV 156 (491)
T ss_pred HHHhccCCCCEEEEecccCCCHHHHHHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEEEeCCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy13354 540 QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619 (1342)
Q Consensus 540 ~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~ 619 (1342)
++++++|+|||+.++|.+++.+++.+|+.++++++|+.++++++++|++.++||+|+++++|+|++.|+++.||.++|++
T Consensus 157 ~Kl~~tI~SRc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~GslR~alslLdqli~y~~~~It~e~V~~ 236 (491)
T PRK14964 157 KKIPVTIISRCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSGSMRNALFLLEQAAIYSNNKISEKSVRD 236 (491)
T ss_pred HHHHHHHHHhheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988999999999
Q ss_pred HhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc-CCchhHHHHHHHHhc
Q psy13354 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI-KDSPNYNEIIQLSKK 698 (1342)
Q Consensus 620 ~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~-~~~~~~~~~~~~a~~ 698 (1342)
+++...+..+|++++++..+|...|+.++++|...+ +|..++..|...+|.++..+..+.... ...+....+.+++.
T Consensus 237 llg~~~~~~If~L~~aI~~~d~~~Al~~l~~Ll~~g-~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 314 (491)
T PRK14964 237 LLGCVDKHILEDLVEAILLGDAQSALNVFRELCNTS-NPVIILEGMLQIIYEICYFSITKEIDFLLGEDLITRIKSLKI- 314 (491)
T ss_pred HHccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHHhcCccccccCCHHHHHHHHHHhC-
Confidence 999999999999999999999999999999999876 689999999999999998887654322 23345566888888
Q ss_pred CCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 699 FNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 699 ~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
+|...|.++|+.++++..++|.+.+|+.++||+++++|++++|++
T Consensus 315 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~e~~~~rl~~~~~~~~ 359 (491)
T PRK14964 315 GSTIFLSRLWQMLLKGIQEVKSSTCVKQAAEMMIIRLCYLSDLPS 359 (491)
T ss_pred CCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCCCCC
Confidence 999999999999999999999999999999999999999987754
No 9
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=100.00 E-value=3.3e-53 Score=500.67 Aligned_cols=358 Identities=46% Similarity=0.766 Sum_probs=339.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|||||||+.|++++||++++..|.+++..++++|+|||+||.|+|||++||.+|+.|||.. +.+..||+.|.
T Consensus 3 yq~L~rKyRP~~F~evvGQe~v~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~-----~~~~ePC~~C~ 77 (515)
T COG2812 3 YQVLARKYRPKTFDDVVGQEHVVKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCEN-----GPTAEPCGKCI 77 (515)
T ss_pred hHHHHHHhCcccHHHhcccHHHHHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCC-----CCCCCcchhhh
Confidence 5689999999999999999999999999999999999999999999999999999999999974 36789999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..|+++|++++|++++++++++|++++...+.|..+++||+||||+|+|+++++|+|||+||+||++++|||+|+
T Consensus 78 ~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATT 157 (515)
T COG2812 78 SCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATT 157 (515)
T ss_pred hhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++|++.||+|||+.++|+.++.+++...|..++.++++.++++++..+++.++|++|+++++||++..++.+.||.+.|
T Consensus 158 e~~Kip~TIlSRcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~Gs~RDalslLDq~i~~~~~~It~~~v 237 (515)
T COG2812 158 EPQKIPNTILSRCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEGSLRDALSLLDQAIAFGEGEITLESV 237 (515)
T ss_pred CcCcCchhhhhccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCCChhhHHHHHHHHHHccCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999989999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC-cccccCCchhHH-HHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQIS-PEILIKDSPNYN-EIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~-~~~~~~~~~~~~-~~~~~ 695 (1342)
.++++..+...+.++++++..+|...++..++++..+|.+|..++..|..++|+++.++.. +........... .+..+
T Consensus 238 ~~~lG~~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~G~~~~~~l~dl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (515)
T COG2812 238 RDMLGLTDIEKLLSLLEAILKGDAKEALRLINELIEEGKDPEAFLEDLLNFLRDLLLFKQTVPNELQLNTTEIEERTKEL 317 (515)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHhcccchhhccchhhhHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999997666543 333233333333 48899
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQT 740 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~ 740 (1342)
+.+++..+|.++++.+.....++|.+.+++.++||++++++...+
T Consensus 318 a~~~~~~~l~~~~~~~~~~~~e~~~s~~~~~~~E~~lirl~~~~~ 362 (515)
T COG2812 318 ASQISVLNLQRLYQLLLPGLKELKRSLSPRLGLEMTLIRLLEAAP 362 (515)
T ss_pred HHhcCHHHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHhhcc
Confidence 999999999999999999999999999999999999999998754
No 10
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.6e-52 Score=511.69 Aligned_cols=367 Identities=40% Similarity=0.637 Sum_probs=349.7
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..|+++|+|||+||+|+|||++|+.+++.++|......++++.++|+.|.
T Consensus 11 y~~la~KyRP~~f~dliGq~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~ 90 (598)
T PRK09111 11 YRVLARKYRPQTFDDLIGQEAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGE 90 (598)
T ss_pred chhHHhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccH
Confidence 57899999999999999999999999999999999999999999999999999999999999876655467889999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++++.+.+.|+++++|||||||+|+|+.+++|+|+++||+||++++|||+++
T Consensus 91 ~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tt 170 (598)
T PRK09111 91 HCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATT 170 (598)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+.++++++|+|||+.++|.+++.+++..||.++++++|+.++++++++|++.++||+|+++++|+|++.|+.+.||.++|
T Consensus 171 e~~kll~tI~SRcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~Gdlr~al~~Ldkli~~g~g~It~e~V 250 (598)
T PRK09111 171 EIRKVPVTVLSRCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEGSVRDGLSLLDQAIAHGAGEVTAEAV 250 (598)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcc---cccCCchhHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPE---ILIKDSPNYNEIIQ 694 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~---~~~~~~~~~~~~~~ 694 (1342)
+++++...+.++|++++++..++...|+.+++++...|++|..++.+|+++||+++++|.+.+ ....+++...++.+
T Consensus 251 ~~llg~~~~~~if~L~~ai~~gd~~~Al~~l~~l~~~G~~p~~il~~L~~~~r~L~~vK~~~~~a~~~~~~p~~~~kl~~ 330 (598)
T PRK09111 251 RDMLGLADRARVIDLFEALMRGDVAAALAEFRAQYDAGADPVVVLTDLAEFTHLVTRLKIVPDAAEDPSLSEAERTRGAE 330 (598)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhcccCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998643 34456667788999
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccccc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHNH 744 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~~ 744 (1342)
++++||...|.++|+.|++++.++|++.|+.+++|++++++|..++||.+
T Consensus 331 ~A~~~s~~~L~r~~q~Ll~~~~~vK~~~n~~lalE~lLlrl~~~~~lp~~ 380 (598)
T PRK09111 331 FAKKLSMRVLSRLWQMLLKGIEEVQGAPRPLAAAEMVLIRLAYAADLPTP 380 (598)
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHhhccCCCH
Confidence 99999999999999999999999999999999999999999999888653
No 11
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.8e-51 Score=492.55 Aligned_cols=366 Identities=34% Similarity=0.583 Sum_probs=343.0
Q ss_pred HHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 377 IKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 377 ~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
.+.+|++||||++|++++||+++++.|.+++.+++++|+|||+||+|+|||++|+++++.++|.... .++.+..+|+.|
T Consensus 7 ~y~~la~kyRP~~f~dliGq~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~-~~~~~~~~C~~C 85 (507)
T PRK06645 7 QYIPFARKYRPSNFAELQGQEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALI-TENTTIKTCEQC 85 (507)
T ss_pred cccchhhhhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCcccc-ccCcCcCCCCCC
Confidence 4679999999999999999999999999999999999999999999999999999999999997532 234667899999
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
.+|..+..+.|+|+.++|+++..++++++++++.+.+.|+++++|||||||+|+|+.+++++|++++|+|+++++||+++
T Consensus 86 ~~C~~i~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aT 165 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFAT 165 (507)
T ss_pred hHHHHHhcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC---CCCC
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS---EKIT 613 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~---~~It 613 (1342)
+++++++++|+|||+.++|.+++.+++.+|+.++++++|+.++++++++|++.++||+|+++++|+|++.|++ +.||
T Consensus 166 te~~kI~~tI~SRc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~GslR~al~~Ldkai~~~~~~~~~It 245 (507)
T PRK06645 166 TEVQKIPATIISRCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEGSARDAVSILDQAASMSAKSDNIIS 245 (507)
T ss_pred CChHHhhHHHHhcceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhhccCCCCcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999988864 3699
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCC-chhHHHH
Q psy13354 614 LNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKD-SPNYNEI 692 (1342)
Q Consensus 614 ~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~-~~~~~~~ 692 (1342)
.++|+++++...++++|+|++++..+|...|+.++++|..+|++|..++..|+.+||.++++|..+...... ......+
T Consensus 246 ~~~V~~llg~~~~~~if~L~~ai~~~d~~~Al~~l~~L~~~g~~~~~~l~~l~~~~~~l~~~k~~~~~~~~~~~~~~~~~ 325 (507)
T PRK06645 246 PQVINQMLGLVDSSVIIEFVEYIIHRETEKAINLINKLYGSSVNLEIFIESVSDFIAYLNKVKMLPNYSLPIYESFNDRT 325 (507)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccchhHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999865322111 2234568
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 693 IQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 693 ~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
.+++.++|...|.++|++++++..++|.+.++++++||+++|+|++.+||.
T Consensus 326 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~l~r~~~~~~lp~ 376 (507)
T PRK06645 326 KSILDKISLPHLSILWQIYNKGVGEIKISYNQLTETEMLVIKSIYSTSLPL 376 (507)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhccCCC
Confidence 899999999999999999999999999999999999999999999988865
No 12
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-51 Score=490.33 Aligned_cols=365 Identities=60% Similarity=0.984 Sum_probs=345.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++++++++|+|||+||+|+|||++|+.+++.|+|.+.....+.+..+|+.|.
T Consensus 3 y~vLarKYRPqtFddVIGQe~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 3 YQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred chhHHHHhCCCcHHHHcCcHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 67899999999999999999999999999999999999999999999999999999999999765555567788999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++++.+.+.|..+++||+||||+|+|+.+.+|+|||+||+|+.+++|||+|+
T Consensus 83 sC~~I~aG~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTt 162 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATT 162 (700)
T ss_pred HHHHHHcCCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||+.++|.+++.+++.+||.+++.++|+.+++++++.|++.++|++|++++++++++.++.+.||.++|
T Consensus 163 ep~kLlpTIrSRCq~f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~Gs~RdALsLLdQaia~~~~~It~~~V 242 (700)
T PRK12323 163 DPQKIPVTVLSRCLQFNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQGSMRDALSLTDQAIAYSAGNVSEEAV 242 (700)
T ss_pred ChHhhhhHHHHHHHhcccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++....+.++++++++..++...++.+++.+...|.++..++..|...++++...|..++.........+.+.++++
T Consensus 243 ~~~LG~~d~~~i~~Ll~aL~~~d~~~~l~l~~~l~~~G~d~~~~L~dLl~~l~~l~l~q~~~~~~~~~~~~~~~~~~~a~ 322 (700)
T PRK12323 243 RGMLGAIDQSYLVRLLDALAAEDGAALLAIADEMAGRSLSFAGALQDLASLLQKIALAQVVPAAVQDDWPEADDIRRLAG 322 (700)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCchhcccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998776544333334677999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
++|.++|+.+|+++++...+|+.+.+++++|||+++||+.++|..
T Consensus 323 ~~s~~~l~~~~q~~~~~~~el~~a~~~~~~~Em~llrll~~~p~~ 367 (700)
T PRK12323 323 RFDAQEVQLFYQIANLGRSELALAPDEYAGFTMTLLRMLAFRPGQ 367 (700)
T ss_pred hCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCCCCC
Confidence 999999999999999999999999999999999999999997753
No 13
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.9e-51 Score=499.09 Aligned_cols=366 Identities=51% Similarity=0.902 Sum_probs=348.1
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|......++.+..||+.|.
T Consensus 3 y~vla~KyRP~~f~dviGQe~vv~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 3 YLVLARKYRPRSFSEMVGQEHVVQALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 67999999999999999999999999999999999999999999999999999999999999876665677889999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++|+++..++++++++++.+.+.|..+++||+||||+|+|+.+.+|+|+++||+||++++|||+|+
T Consensus 83 ~C~~i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Tt 162 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATT 162 (618)
T ss_pred HHHHHHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEEC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++.+|+|||..++|.+++.+++.+||.+++.++|+.++++++.+|++.++||+|+++++++|++.|+.+.||.++|
T Consensus 163 d~~kil~TIlSRc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~GslR~al~lLdq~ia~~~~~It~~~V 242 (618)
T PRK14951 163 DPQKVPVTVLSRCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARGSMRDALSLTDQAIAFGSGQLQEAAV 242 (618)
T ss_pred CchhhhHHHHHhceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc-CCchhHHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI-KDSPNYNEIIQLS 696 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~-~~~~~~~~~~~~a 696 (1342)
+++++...+..+|++++++..+|...++.++++|...|+++..++..|...+|+++.+|..++... ......+.+.+++
T Consensus 243 ~~~Lg~~~~~~i~~LldaL~~~d~~~al~~l~~l~~~G~~~~~il~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 322 (618)
T PRK14951 243 RQMLGSVDRSHVFRLIDALAQGDGRTVVETADELRLNGLSAASTLEEMAAVLQRMAVLQAVPQAAAAATDPEAAEVARLA 322 (618)
T ss_pred HHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhCcccccccChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876543 2233556789999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
+.+|.++|+.+|++++....+++.+.|+++++||+++||+.+.|...
T Consensus 323 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~em~l~r~~~~~~~~~ 369 (618)
T PRK14951 323 ALMPADETQLLYSICLHGRAELGLAPDEYAALTMVLLRLLAFKPAAA 369 (618)
T ss_pred HhCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhhCCCCcc
Confidence 99999999999999999999999999999999999999999977543
No 14
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=4.2e-51 Score=491.60 Aligned_cols=360 Identities=59% Similarity=0.968 Sum_probs=343.8
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++++++++|.|||+|++|+|||++++.+++.++|.. +.+..+|+.|.
T Consensus 3 Y~vLarKYRPqtFdEVIGQe~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~-----~~~~~PCG~C~ 77 (830)
T PRK07003 3 YQVLARKWRPKDFASLVGQEHVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALNCET-----GVTSQPCGVCR 77 (830)
T ss_pred cHhHHHHhCCCcHHHHcCcHHHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcc-----CCCCCCCcccH
Confidence 6789999999999999999999999999999999999999999999999999999999999963 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++|.++..++++++++++.+.+.|..+++||+||||+|+|+...+|+|+++||+|+++++|||+|+
T Consensus 78 sCr~I~~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 78 ACREIDEGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred HHHHHhcCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEEC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+..+++++|+|||+.++|.+++.+++.++|.++++++|+.++++++..|++.++||+|++++++++++.|+.+.|+.+.|
T Consensus 158 d~~KIp~TIrSRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~GsmRdALsLLdQAia~~~~~It~~~V 237 (830)
T PRK07003 158 DPQKIPVTVLSRCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQGSMRDALSLTDQAIAYSANEVTETAV 237 (830)
T ss_pred ChhhccchhhhheEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998889999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++......++++++++..+|...++..+++|...|.++..++..|..+|++++..|..++...........+.++++
T Consensus 238 ~~~LG~~d~~~i~~ll~aL~~~d~~~~l~~~~~l~~~g~~~~~~l~dLl~~l~~~~~~q~~~~~~~~~~~e~~~~~~~a~ 317 (830)
T PRK07003 238 SGMLGALDQTYMVRLLDALAAGDGPEILAVADEMALRSLSFSTALQDLASLLHRIAWAQFAPASVLDEWPEAADLRRFAE 317 (830)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCccccccccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999877655554556678999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
++|.++|+.+|++++....+++.+.|++++|||+++||+.+.++.
T Consensus 318 ~~s~~~l~~~~qi~l~g~~el~~ap~~~~~~Em~llr~l~~~p~~ 362 (830)
T PRK07003 318 LLSPEQVQLFYQIATVGRGELGLAPDEYAGFTMTLLRMLAFEPAV 362 (830)
T ss_pred hCCHHHHHHHHHHHHhHHHHhhcCCCHHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999999999999999999999998774
No 15
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.7e-51 Score=496.14 Aligned_cols=357 Identities=50% Similarity=0.828 Sum_probs=340.2
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|.. +.+..||+.|.
T Consensus 3 y~~l~~kyRP~~f~divGq~~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-----~~~~~pCg~C~ 77 (509)
T PRK14958 3 HQVLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNCEK-----GVSANPCNDCE 77 (509)
T ss_pred chhHHHHHCCCCHHHhcCCHHHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCcccCCCCH
Confidence 5689999999999999999999999999999999999999999999999999999999999963 34568999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..++.+.++|++++++++..++++++++++.+.+.|..+++||+||||+|+|+.+++|+|+++||+||++++|||+|+
T Consensus 78 ~C~~i~~g~~~d~~eidaas~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fIlatt 157 (509)
T PRK14958 78 NCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATT 157 (509)
T ss_pred HHHHHhcCCCceEEEEcccccCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEEEEEC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++++|+|||..++|.+++.+++.+|+..+++++|+.+++++++.|++.++||+|++++++++++.|+.+.||.++|
T Consensus 158 d~~kl~~tI~SRc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~GslR~al~lLdq~ia~~~~~It~~~V 237 (509)
T PRK14958 158 DHHKLPVTVLSRCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADV 237 (509)
T ss_pred ChHhchHHHHHHhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhcCCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998788999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++...++.+|++++++..+|...++.++++|...|+++..++..|...+|+++.++..++... ......+.++++
T Consensus 238 ~~~lg~~~~~~i~~ll~al~~~d~~~~l~~~~~l~~~g~~~~~il~~l~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 315 (509)
T PRK14958 238 KTMLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVPEALI--ENDSEQLRQLAK 315 (509)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc--cchHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998876543 224566889999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
.+|.++++.++++++....+||.+++++.++||++++|+.+.|-
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~ 359 (509)
T PRK14958 316 LLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAFYPS 359 (509)
T ss_pred hCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999998763
No 16
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.2e-51 Score=502.54 Aligned_cols=358 Identities=39% Similarity=0.681 Sum_probs=340.5
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++++|+++|+||||||+|+|||++|+.+++.++|.. +.+..||+.|.
T Consensus 3 y~~l~~k~RP~~f~~iiGq~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~-----~~~~~~c~~c~ 77 (576)
T PRK14965 3 YLVLARKYRPQTFSDLTGQEHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALNCEQ-----GLTAEPCNVCP 77 (576)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCC-----CCCCCCCCccH
Confidence 5789999999999999999999999999999999999999999999999999999999999963 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++++++..++++++++++.+.+.|+++++||+||||+|+|+.+++|+|+++||+||++++|||+|+
T Consensus 78 ~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~ 157 (576)
T PRK14965 78 PCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATT 157 (576)
T ss_pred HHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeC
Confidence 99999999999999999998899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||..++|.+++.+++..|+..+++++|+.++++++..|++.++||+|+++++|+|++.|+++.||.++|
T Consensus 158 ~~~kl~~tI~SRc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G~lr~al~~Ldqliay~g~~It~edV 237 (576)
T PRK14965 158 EPHKVPITILSRCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDGSMRDSLSTLDQVLAFCGDAVGDDDV 237 (576)
T ss_pred ChhhhhHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999889999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc---ccCCchhHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI---LIKDSPNYNEIIQ 694 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~---~~~~~~~~~~~~~ 694 (1342)
.++++......+|++++++..+|...++.+++++...|+++..++..|.++||+++.+|...+. .....+....+.+
T Consensus 238 ~~llG~~~~~~l~~ll~al~~~d~~~al~~l~~l~~~G~~~~~~l~~Ll~~~RdLl~~k~~~~~~~~l~~~~~~~~~~~~ 317 (576)
T PRK14965 238 AELLGVVDRRLLLDISAAVFGRDTRALLEIVERVDEFGYNMRQFCQELIDHLRNLVVLRAVGEPGDLLDLSEAELAELRA 317 (576)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999986432 2244556677899
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQT 740 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~ 740 (1342)
+++.||.++|.++++.+.++|+++|.+.++++.||+++++||.+.+
T Consensus 318 ~A~~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~lE~lllkl~~~~~ 363 (576)
T PRK14965 318 QAAAADAADLQRHLTLLLRAEGEMAHASFPRLVLEMALLKMATLAP 363 (576)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHhhccC
Confidence 9999999999999999999999999988999999999999998753
No 17
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-50 Score=484.10 Aligned_cols=361 Identities=49% Similarity=0.819 Sum_probs=342.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++.+++++|+|||+||+|+|||++|+++|+.++|.. +.+..||+.|.
T Consensus 2 Y~~LarKyRPktFddVIGQe~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~-----~~~~~pCg~C~ 76 (702)
T PRK14960 2 YQVLARKYRPRNFNELVGQNHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNCET-----GVTSTPCEVCA 76 (702)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCc-----CCCCCCCccCH
Confidence 4689999999999999999999999999999999999999999999999999999999999963 45668999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++++++..++++++++++.+.+.|..+++||+||||+|+|+..++++|++++|+|+++++||++++
T Consensus 77 sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTt 156 (702)
T PRK14960 77 TCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATT 156 (702)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEEC
Confidence 99999999999999999998899999999999999999989999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++.+++|||.+++|.+++.+++.+||.++++++|+.++++++..|++.++||+|++++++++++.|+++.||.++|
T Consensus 157 d~~kIp~TIlSRCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~GdLRdALnLLDQaIayg~g~IT~edV 236 (702)
T PRK14960 157 DPQKLPITVISRCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQGSLRDALSLTDQAIAYGQGAVHHQDV 236 (702)
T ss_pred ChHhhhHHHHHhhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCc-hhHHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDS-PNYNEIIQLS 696 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~-~~~~~~~~~a 696 (1342)
.++++...++.+|++++++..++..+++.+++++...|.++..++..|...+|+++.++..++...... .....+.+++
T Consensus 237 ~~lLG~~d~e~IfdLldAI~k~d~~~al~~L~el~~~g~d~~~~l~~Ll~~lrdlll~~~~~~~~~~~~~~~~~~~~~la 316 (702)
T PRK14960 237 KEMLGLIDRTIIYDLILAVHQNQREKVSQLLLQFRYQALDVSLVLDQLISTLHELALLQYLPELGLKYSEEINAKILQLS 316 (702)
T ss_pred HHHhccCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999998776543332 3456688999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
+++|...|..++++++++..++|.+.++++++||+++|||.++|+++
T Consensus 317 ~~~s~~~l~~~~qi~l~~~~~l~~s~~~r~~lEm~llrl~~~~p~~~ 363 (702)
T PRK14960 317 KLISAQDLQLYYQIACKGRSDLQLAVTQEQGFEMCVLRLLAFRPLAP 363 (702)
T ss_pred HcCCHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhCCCCCh
Confidence 99999999999999999999999999999999999999999988853
No 18
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.7e-50 Score=495.76 Aligned_cols=362 Identities=36% Similarity=0.577 Sum_probs=338.1
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCC---CCcccCCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGN---GGITSQPCG 454 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~---~~~~~~~c~ 454 (1342)
+.++++||||++|++++||+++++.|.+++.+|+++|+|||+||+|+|||++|+.+|+.++|...... ...+..+|+
T Consensus 3 ~~~l~~kyRP~~f~eivGQe~i~~~L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg 82 (620)
T PRK14954 3 YQVIARKYRPSKFADITAQEHITHTIQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCG 82 (620)
T ss_pred cHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999642210 011236999
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEE
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFIL 534 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl 534 (1342)
.|.+|..+..+.++|+.++++.+..++++++++++.+...|+++++|||||||+|.|+.+++++|+++||+||++++|||
T Consensus 83 ~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL 162 (620)
T PRK14954 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIF 162 (620)
T ss_pred cCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEE
Confidence 99999999999999999999888888999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc-----C
Q psy13354 535 ATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS-----S 609 (1342)
Q Consensus 535 ~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~-----~ 609 (1342)
++++.+++.++|+|||++++|.+++.+++..||.++++++|+.++++++++|++.++||+|.++++++|+..|+ +
T Consensus 163 ~t~~~~kLl~TI~SRc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~Gdlr~al~eLeKL~~y~~~~~~~ 242 (620)
T PRK14954 163 ATTELHKIPATIASRCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQGSMRDAQSILDQVIAFSVGSEAE 242 (620)
T ss_pred EeCChhhhhHHHHhhceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999997 4
Q ss_pred CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCC--ch
Q psy13354 610 EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKD--SP 687 (1342)
Q Consensus 610 ~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~--~~ 687 (1342)
+.||.++|.++++...++++|++++++..++..+++.++++|...|++|..|+.+|+++||+++++|.....+... .+
T Consensus 243 ~~It~~~V~~lv~~~~e~~iF~L~dai~~~d~~~al~~l~~Ll~~ge~p~~iL~lL~~~fRdLL~vK~~~~~~l~~~~~~ 322 (620)
T PRK14954 243 KVIAYQGVAELLNYIDDEQFFDVTDAIAENDAVKMLEVARFVIDNGYDEQDFLEKLIEHFRNFLVLYNLRSTRLIERPES 322 (620)
T ss_pred CccCHHHHHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccccccCCHH
Confidence 5699999999999999999999999999999999999999999999999999999999999999999876654332 34
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccc
Q psy13354 688 NYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 688 ~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~ 739 (1342)
...++.+++++||.++|.++++.+.++|++||++.++++++|++++++|.+.
T Consensus 323 v~~~l~~qA~~fs~~~L~~~l~~l~e~d~~LKtn~n~~l~lEllLlkl~~~~ 374 (620)
T PRK14954 323 VKERYQQSAGGLTPAAVMQMTDFLMKTQGELKFQFEYQFRFELALLRLIELV 374 (620)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHhcc
Confidence 5778999999999999999999999999999999999999999999999864
No 19
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=8.3e-50 Score=486.51 Aligned_cols=353 Identities=31% Similarity=0.534 Sum_probs=331.1
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+++++.++|.. +.+..||+.|.+|
T Consensus 2 al~~kyRP~~f~eivGq~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-----~~~~~pCg~C~~C 76 (584)
T PRK14952 2 ALYRKYRPATFAEVVGQEHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLNCAQ-----GPTATPCGVCESC 76 (584)
T ss_pred cHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc-----CCCCCcccccHHH
Confidence 68999999999999999999999999999999999999999999999999999999999963 3445799999999
Q ss_pred hhhcc--CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 460 VKIDN--GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 460 ~~~~~--~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
..+.. +.++|++++++++..++++++++++.+.+.|+++++||+||||+|+|+.+++|+|+++||+||++++|||+|+
T Consensus 77 ~~i~~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tt 156 (584)
T PRK14952 77 VALAPNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATT 156 (584)
T ss_pred HHhhcccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeC
Confidence 99875 4578999999998889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc-CCCCCHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS-SEKITLNS 616 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~-~~~It~e~ 616 (1342)
++++++++|+|||++++|.+++.+++.+||.++++++|+.++++++.++++.++||+|+++++|++++.|. ++.||.++
T Consensus 157 e~~kll~TI~SRc~~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~GdlR~aln~Ldql~~~~~~~~It~~~ 236 (584)
T PRK14952 157 EPEKVLPTIRSRTHHYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYQR 236 (584)
T ss_pred ChHhhHHHHHHhceEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987 56799999
Q ss_pred HHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcc---ccc--CCchhHHH
Q psy13354 617 MQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPE---ILI--KDSPNYNE 691 (1342)
Q Consensus 617 V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~---~~~--~~~~~~~~ 691 (1342)
|.++++......+|++++++..+|...++.+++++...|+++.+++.+|.++||+++.+|..++ .+. .+.+...+
T Consensus 237 v~~llg~~~~~~i~~lv~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~RdLll~k~~~~~~~~~l~~~~~~~~~~ 316 (584)
T PRK14952 237 ALGLLGATDVALIDDAVDALAADDAAALFGAIESVIDAGHDPRRFATDLLERFRDLIVLQAVPDAAARGVVDAPEDVLER 316 (584)
T ss_pred HHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcchhhhcccccCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999998543 222 24677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 692 IIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 692 ~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
+.+++++||.++|.++++.+.+....++++.++++.+|++++++|.
T Consensus 317 l~~qa~~~s~~~L~~~i~~l~~~~~~~~~~~~~rl~LE~llikl~~ 362 (584)
T PRK14952 317 MREQAARIGLATLTRYAEVVQAGLGEMRGATAPRLLLEVVCARLLL 362 (584)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHhc
Confidence 9999999999999999997777777777889999999999999985
No 20
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=8.2e-50 Score=482.86 Aligned_cols=362 Identities=51% Similarity=0.883 Sum_probs=343.7
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|.. +.+..+|+.|.
T Consensus 3 y~vLarKYRP~tFddIIGQe~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~-----~~~~~pCg~C~ 77 (709)
T PRK08691 3 YQVLARKWRPKTFADLVGQEHVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNCEN-----AQHGEPCGVCQ 77 (709)
T ss_pred chhHHHHhCCCCHHHHcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcccC-----CCCCCCCcccH
Confidence 5789999999999999999999999999999999999999999999999999999999999964 34568999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++++++..++++++++++.+.+.|+++++|||||||+|+|+..++++|+++||+|+++++|||+++
T Consensus 78 sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTt 157 (709)
T PRK08691 78 SCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (709)
T ss_pred HHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeC
Confidence 99999999999999999998999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++.+|+|||..++|.+++.+++..||.++++++|+.++++++..|++.++||+|+++++|++++.|+.+.|+.++|
T Consensus 158 d~~kL~~TIrSRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~GslRdAlnLLDqaia~g~g~It~e~V 237 (709)
T PRK08691 158 DPHKVPVTVLSRCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAGSMRDALSLLDQAIALGSGKVAENDV 237 (709)
T ss_pred CccccchHHHHHHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
..+++...+..+|+|++++..++...++.++++|...|.++..++..|...+|+++.++..++.........+.+.+++.
T Consensus 238 ~~lLG~~d~~~If~LldAL~~~d~~~al~~l~~L~~~G~d~~~~l~~L~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (709)
T PRK08691 238 RQMIGAVDKQYLYELLTGIINQDGAALLAKAQEMAACAVGFDNALGELAILLQQLALIQAVPSALAHDDPDSDILHRLAQ 317 (709)
T ss_pred HHHHcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCchhccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876644333344567899999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHNH 744 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~~ 744 (1342)
++|.++|+.+|++++++..+|+.+.+++++|||+++||+.+.|+...
T Consensus 318 ~~~~~~l~~~~q~~l~~~~~l~~a~~~~~~~Em~llrl~~~~p~~~~ 364 (709)
T PRK08691 318 TISGEQIQLYYQIAVHGKRDLSLAPDEYAGFMMTLLRMLAFAPLAAA 364 (709)
T ss_pred cCCHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcCCCCcc
Confidence 99999999999999999999999999999999999999999888653
No 21
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=2.4e-49 Score=487.07 Aligned_cols=356 Identities=41% Similarity=0.688 Sum_probs=338.7
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|+|||||++|++++||+++++.|.++++.++++|+|||+||+|+|||++|+.+++.++|... ....||+.|+
T Consensus 3 y~al~~k~rP~~f~~viGq~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~-----~~~~pC~~C~ 77 (559)
T PRK05563 3 YQALYRKWRPQTFEDVVGQEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNP-----PDGEPCNECE 77 (559)
T ss_pred cHHHHHHhCCCcHHhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCC-----CCCCCCCccH
Confidence 56899999999999999999999999999999999999999999999999999999999999743 3457999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|+++++++++.++++++++++.+.+.|+++++||+||||+|+|+.+++|+|++++|+||++++||++|+
T Consensus 78 ~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt 157 (559)
T PRK05563 78 ICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATT 157 (559)
T ss_pred HHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeC
Confidence 99999999999999999999899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||+.++|.+++.+++..|+..+++++|+.+++++++.+++.++|++|+++++|++++.|+++.||.++|
T Consensus 158 ~~~ki~~tI~SRc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G~~R~al~~Ldq~~~~~~~~It~~~V 237 (559)
T PRK05563 158 EPHKIPATILSRCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEGGMRDALSILDQAISFGDGKVTYEDA 237 (559)
T ss_pred ChhhCcHHHHhHheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998778999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc--cCCchhHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL--IKDSPNYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~--~~~~~~~~~~~~~ 695 (1342)
.++++....+.+|++++++..+|...++.+++++...|+++.+++..|.++||+++.++...+.. ..+.+..+.+.++
T Consensus 238 ~~vlg~~~~~~i~~l~~al~~~d~~~al~~l~~l~~~g~d~~~~l~~L~~~~Rdll~~k~~~~~~~~~~~~~~~~~~~~~ 317 (559)
T PRK05563 238 LEVTGSVSQEALDDLVDAIVEGDVAKALKILEELLDEGKDPNRFIEDLIYYLRDLLLVKTSPELEILDESTENDELFKEL 317 (559)
T ss_pred HHHhCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCcccccccCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865432 2345567788999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+++||.++|.+++..+.+++.++|.+.++++.+|++++++|..
T Consensus 318 a~~~s~~~L~~~i~~L~~~~~~lk~~~~~~l~lE~lllkl~~~ 360 (559)
T PRK05563 318 SEKLDIERLYRMIDILNDAQQQIKWTNQPRIYLEVALVKLCEQ 360 (559)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999899999999999999974
No 22
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.3e-49 Score=474.86 Aligned_cols=362 Identities=36% Similarity=0.581 Sum_probs=336.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCC---CcccCCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNG---GITSQPCG 454 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~---~~~~~~c~ 454 (1342)
..+|++||||++|++++||+++++.|.+++.+|+++|+|||+||+|+|||++|+++|+.++|+...... ..+..||+
T Consensus 3 ~~~l~~k~RP~~~~eiiGq~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~ 82 (397)
T PRK14955 3 YQVIARKYRPKKFADITAQEHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCG 82 (397)
T ss_pred cHHHHHhcCCCcHhhccChHHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCC
Confidence 468999999999999999999999999999999999999999999999999999999999996421100 01246999
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEE
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFIL 534 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl 534 (1342)
.|.+|..+..+.++|+.++++....++++++++.+.+...|+++++|||||||+|.++.+.++.|++++|+|++.++||+
T Consensus 83 ~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il 162 (397)
T PRK14955 83 ECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIF 162 (397)
T ss_pred CCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEE
Confidence 99999999999999999999887788999999999999999999999999999999999999999999999999999999
Q ss_pred EeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC-----
Q psy13354 535 ATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS----- 609 (1342)
Q Consensus 535 ~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~----- 609 (1342)
++++.+++.++|++||.+++|.+++.+++.+|+..+++++|+.++++++++|++.++||+|.+.++++++..|+.
T Consensus 163 ~t~~~~kl~~tl~sR~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g~lr~a~~~L~kl~~~~~~~~~~ 242 (397)
T PRK14955 163 ATTELHKIPATIASRCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQGSMRDAQSILDQVIAFSVESEGE 242 (397)
T ss_pred EeCChHHhHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999862
Q ss_pred CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc-CCchh
Q psy13354 610 EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI-KDSPN 688 (1342)
Q Consensus 610 ~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~-~~~~~ 688 (1342)
+.||.++|+++++...++++|++++++.+++...|+.++++|..++++|..|+.+|.++||+++++|.+.+.+. .+++.
T Consensus 243 ~~It~~~v~~~v~~~~~~~vf~l~~ai~~~~~~~al~~~~~l~~~~~~~~~iL~ll~~~~R~ll~~k~~~~~~~~~~~~~ 322 (397)
T PRK14955 243 GSIRYDKVAELLNYIDDEHFFAVTDAVADGDAVAMLDVAQFVIRNGYDEQDFLEKLIEHLRNFLVVHNLRSTRLVERPDA 322 (397)
T ss_pred CccCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccccccccCCHH
Confidence 46999999999999999999999999999999999999999999999999999999999999999999877653 44554
Q ss_pred H-HHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccc
Q psy13354 689 Y-NEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 689 ~-~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~ 739 (1342)
. +.+.+++++||.++|.++++.+.++|+++|++.|+++++|+++++++.+.
T Consensus 323 ~~~~~~~~a~~~s~~~L~~~l~~l~e~d~~lK~~~~~~l~lE~lll~l~~~~ 374 (397)
T PRK14955 323 VRERYERDAAKFSPEVIMQMTDLLLQTQKELKFQFEYQFRFELALLKLIEIG 374 (397)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHhhC
Confidence 4 57899999999999999999999999999998999999999999999864
No 23
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.1e-49 Score=487.55 Aligned_cols=357 Identities=36% Similarity=0.577 Sum_probs=338.6
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.++|+||||.+|++++||+++++.|.+++++|+++|+||||||+|+|||++|+.+++.++|..+. ....+|+.|.
T Consensus 4 ~~~~~~kyRP~~f~~viGq~~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~----~~~~~Cg~C~ 79 (614)
T PRK14971 4 YIVSARKYRPSTFESVVGQEALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLT----ADGEACNECE 79 (614)
T ss_pred hHHHHHHHCCCCHHHhcCcHHHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCC----CCCCCCCcch
Confidence 578999999999999999999999999999999999999999999999999999999999997532 2357899999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++++.++++++..++++++++++.+.+.|+++++|||||||+|.|+.+++++|+++||+||++++|||+++
T Consensus 80 sC~~~~~~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt 159 (614)
T PRK14971 80 SCVAFNEQRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATT 159 (614)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeC
Confidence 99999999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.++|+|||.+++|.+++.+++..||.++++++|+.++++++++|++.++||+|+++++++++..|+++.||.++|
T Consensus 160 ~~~kIl~tI~SRc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~gdlr~al~~Lekl~~y~~~~It~~~V 239 (614)
T PRK14971 160 EKHKILPTILSRCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADGGMRDALSIFDQVVSFTGGNITYKSV 239 (614)
T ss_pred CchhchHHHHhhhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999878999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc--ccCCchhHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI--LIKDSPNYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~--~~~~~~~~~~~~~~ 695 (1342)
.+++....++++|+|++++.+++...++.++++|+..|++|..|+.+|+++||+++.+|..... .....+..+.+.++
T Consensus 240 ~~~l~~~~~~~iF~L~dai~~~~~~~al~ll~~Ll~~g~~~~~iL~~L~~~fRdlL~~K~~~~~~ll~v~~~~~~~~~~q 319 (614)
T PRK14971 240 IENLNILDYDYYFRLTDALLAGKVSDSLLLFDEILNKGFDGSHFITGLASHFRDLLVCKDAATLQLLEVGESIRQRYLEQ 319 (614)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhcccccccccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999976442 22345567789999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+++||.++|.++++.+.++|+.+|++.|+++.+|++++++|.+
T Consensus 320 a~~~s~~~L~~~l~~l~e~d~~lK~~~n~~l~lE~lllkL~~~ 362 (614)
T PRK14971 320 AQKCPMSFLYRALKLCNQCDLNYRASKNKRLLVELTLIQLAQL 362 (614)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999986
No 24
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.2e-49 Score=481.20 Aligned_cols=360 Identities=32% Similarity=0.594 Sum_probs=335.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+||+||||++|++++||+++++.|.+++++++++|+||||||+|+|||++|+++++.++|.. +.+..||+.|.
T Consensus 3 y~~l~~kyRP~~f~diiGqe~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~-----~~~~~pC~~C~ 77 (563)
T PRK06647 3 YRGTATKRRPRDFNSLEGQDFVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLNCVN-----GPTPMPCGECS 77 (563)
T ss_pred cHHHHHHhCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhcccc-----CCCCCCCccch
Confidence 5789999999999999999999999999999999999999999999999999999999999863 34557999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|+.++++++..++++++++.+.+.+.|+++++||+||||+|+|+.+++|+|++++|+||++++||++++
T Consensus 78 ~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tt 157 (563)
T PRK06647 78 SCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATT 157 (563)
T ss_pred HHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecC
Confidence 99999999999999999888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||+.++|.+++.+++.+|+.++++++|+.++++++.+|++.++||+|+++++|+|++.|+++.||.++|
T Consensus 158 e~~kL~~tI~SRc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~GdlR~alslLdklis~~~~~It~e~V 237 (563)
T PRK06647 158 EVHKLPATIKSRCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTGSVRDAYTLFDQVVSFSDSDITLEQI 237 (563)
T ss_pred ChHHhHHHHHHhceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++....+.+|++++++..+|...|+.+++++...|+++..++.+|+++||+++.+|.+.............+.++++
T Consensus 238 ~~llg~~~~~~if~LidaI~~~D~~~al~~l~~Ll~~G~d~~~iL~~Ll~~fRdLL~vK~G~~~~~~l~~~~e~l~k~~~ 317 (563)
T PRK06647 238 RSKMGLTGDEFLEKLASSILNEDAKELLCVLDSVFLSGVSVEQFLLDCIEFFRELLFLKHGIKNEAFIGIKAERLPEKLR 317 (563)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhcCCchhhhccccHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999998753321111122234667778
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
+|+.++|.++++.+.+++.++|.+.++++++|++++++|.....+
T Consensus 318 ~~s~~~L~~~l~~Llea~~~lK~n~~~~l~lE~llikl~~~~~~~ 362 (563)
T PRK06647 318 EFDLSQIERAISVLLETYRDLQFSVNPRYELEINFSKILRLKDYV 362 (563)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcccCC
Confidence 899999999999999999999999999999999999999875443
No 25
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=7.9e-49 Score=479.27 Aligned_cols=359 Identities=56% Similarity=0.942 Sum_probs=342.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|+. +.+..||+.|.
T Consensus 3 ~~~l~~k~rP~~f~divGq~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~-----~~~~~pcg~C~ 77 (527)
T PRK14969 3 YQVLARKWRPKSFSELVGQEHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLNCET-----GVTATPCGVCS 77 (527)
T ss_pred cHHHHHHhCCCcHHHhcCcHHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCCCCH
Confidence 5789999999999999999999999999999999999999999999999999999999999963 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
.|..++.+.++|++++++++..++++++++++.+...|+++++||+||||+|.|+.+++|+|++++|+||++++|||+|+
T Consensus 78 ~C~~i~~~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~ 157 (527)
T PRK14969 78 ACLEIDSGRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATT 157 (527)
T ss_pred HHHHHhcCCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++++|+|||..++|.+++.+++.+|+.++++++|+.+++++++.|++.++||+|++++++++++.|+.+.|+.++|
T Consensus 158 d~~kil~tI~SRc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~Gslr~al~lldqai~~~~~~I~~~~v 237 (527)
T PRK14969 158 DPQKIPVTVLSRCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAGSMRDALSLLDQAIAYGGGTVNESEV 237 (527)
T ss_pred ChhhCchhHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++...++.+|++++++..++...++.++++|...|+++..+|..|+..||+++.+|..++......+....+.+++.
T Consensus 238 ~~~~~~~~~~~i~~ll~al~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rd~~~~~~~~~~~~~~~~~~~~~~~~a~ 317 (527)
T PRK14969 238 RAMLGAIDQDYLFALLEALLAQDGAALLAIADAMEERSLSFDAALQDLAALLHRLAIAQTVPDSIADDLPERDRLLDLAK 317 (527)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhcCcccccccchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876655455556778999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
++|.++|+.+++.+.++..+|+.+++++++|||+++||+.+.|.
T Consensus 318 ~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~e~~~~r~~~~~~~ 361 (527)
T PRK14969 318 RLSPEDIQLYYQIALHGRRDLGLAPDEYAGFTMTLLRMLAFRPS 361 (527)
T ss_pred cCCHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHhccCCC
Confidence 99999999999999999999999999999999999999999775
No 26
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.3e-48 Score=477.11 Aligned_cols=359 Identities=48% Similarity=0.801 Sum_probs=339.6
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..|+++|+|||+||+|+|||++|+.+++.++|.. +.+..||+.|.
T Consensus 3 y~~La~KyRP~~f~divGQe~vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~-----~~~~~pCg~C~ 77 (647)
T PRK07994 3 YQVLARKWRPQTFAEVVGQEHVLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNCET-----GITATPCGECD 77 (647)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhhcc-----CCCCCCCCCCH
Confidence 5789999999999999999999999999999999999999999999999999999999999962 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++++.+...|..+++||+||||+|+|+.+++|+||++||+||++++||++|+
T Consensus 78 ~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt 157 (647)
T PRK07994 78 NCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 157 (647)
T ss_pred HHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecC
Confidence 99999999999999999987789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++++|+|||..+.|.+++.+++..+|.++++++|+.++++++..|++.++|++|++++++++++.++++.||.++|
T Consensus 158 ~~~kLl~TI~SRC~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~Gs~R~Al~lldqaia~~~~~it~~~v 237 (647)
T PRK07994 158 DPQKLPVTILSRCLQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADGSMRDALSLTDQAIASGNGQVTTDDV 237 (647)
T ss_pred CccccchHHHhhheEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cCCchhHHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IKDSPNYNEIIQLS 696 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~~~~~~~~~~~~a 696 (1342)
.++++....+.++++++++..++...++..+++|...|.++..++..|...+|+++.++..++.. ..+.+....+..++
T Consensus 238 ~~~lg~~d~~~~~~ll~al~~~d~~~~l~~~~~l~~~g~d~~~~L~~l~~~lrdil~~q~~~~~~~~~~~d~~~~l~~la 317 (647)
T PRK07994 238 SAMLGTLDDDQALSLLEALVEGDGERVMALINQLAERGPDWEGLLVELLELLHRIAMAQLLPAALDNDMADIELRLRELA 317 (647)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccchhcccchhHHHHHHHHH
Confidence 99999988889999999999999999999999999999999999999999999999999876643 23344445789999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
++++.++++.+++++.++..+|+.+.|++++|||++++|+.|.|-
T Consensus 318 ~~~s~~~l~~~~q~~~~~~~~L~~n~n~~l~lE~~llr~~~~~P~ 362 (647)
T PRK07994 318 RTLPPEDVQLYYQTLLIGRKDLPLAPDRRMGVEMTLLRMLAFHPA 362 (647)
T ss_pred HhCCHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999763
No 27
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.9e-48 Score=465.72 Aligned_cols=357 Identities=39% Similarity=0.616 Sum_probs=333.8
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++++++++|+||||||+|+|||++|+.+++.++|.. +.+..||+.|.
T Consensus 3 y~~~~~kyRP~~f~diiGq~~i~~~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~-----~~~~~pc~~c~ 77 (486)
T PRK14953 3 YIPFARKYRPKFFKEVIGQEIVVRILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLNCLN-----PQEGEPCGKCE 77 (486)
T ss_pred chHHHHhhCCCcHHHccChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcC-----CCCCCCCCccH
Confidence 5799999999999999999999999999999999999999999999999999999999999853 23346999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..++.+.++|++++++++..++++++++.+.+.+.|++++++|+||||+|+|+.+++++|++++++||++++||++++
T Consensus 78 nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt 157 (486)
T PRK14953 78 NCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTT 157 (486)
T ss_pred HHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEEC
Confidence 99999999999999999988899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+.++++++|++||+.++|.+++.+++..|+.++++++|+.++++++++|++.++||+|+++++|++++.|++++||.++|
T Consensus 158 ~~~kl~~tI~SRc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G~lr~al~~Ldkl~~~~~~~It~~~V 237 (486)
T PRK14953 158 EYDKIPPTILSRCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEGGMRDAASLLDQASTYGEGKVTIKVV 237 (486)
T ss_pred CHHHHHHHHHHhceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
+++++.+.++++|+|++++..++...|+.++++|...|++|..++++|.++||+++.+|.....-....+. ..+.+ .
T Consensus 238 ~~~lg~~~~~~vf~Li~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~~rdll~~k~~~~~~~~~~~~-~~~~~--~ 314 (486)
T PRK14953 238 EEFLGIVSQESVRKFLNLLLESDVDEAIKFLRTLEEKGYNLNKFWKQLEEEIRNILLNKSLKNPEEVFQVE-DFYRK--L 314 (486)
T ss_pred HHHhCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCChhhhcchH-HHHHH--h
Confidence 99999999999999999999999999999999999999999999999999999999999865432222222 33333 7
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHN 743 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~ 743 (1342)
++|.+.|..+++.+.++...++. .++++++|++++++|+++++++
T Consensus 315 ~~~~~~l~~~~~~~~~~~~~l~~-~~~~~~~E~~ll~l~~~~~~~~ 359 (486)
T PRK14953 315 EKPLEALLYLEDVINKAFSEART-RDPLRAYELAILKLLYVKDIVP 359 (486)
T ss_pred cCCHHHHHHHHHHHHHHHHHHhc-cChhHHHHHHHHHHHhhCCCCC
Confidence 89999999999999999999999 9999999999999999877754
No 28
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=9.2e-48 Score=453.95 Aligned_cols=357 Identities=47% Similarity=0.755 Sum_probs=337.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|.. +....||+.|.
T Consensus 3 ~~~l~~kyrP~~~~~iiGq~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~-----~~~~~pc~~c~ 77 (363)
T PRK14961 3 YQILARKWRPQYFRDIIGQKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQN-----GITSNPCRKCI 77 (363)
T ss_pred cHHHHHHhCCCchhhccChHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCCCCH
Confidence 5689999999999999999999999999999999999999999999999999999999999853 34567999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|+.++++++..++++++++++.+.+.|++++++|+||||+|.++.+++++|++++|+||++++||++++
T Consensus 78 ~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~ 157 (363)
T PRK14961 78 ICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATT 157 (363)
T ss_pred HHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcC
Confidence 99999999999999999887788999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+.+++.++|+|||..++|.+++.+++.+|+.++++++|+.+++++++++++.++||+|+++++++++..++.+.||.++|
T Consensus 158 ~~~~l~~tI~SRc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G~~R~al~~l~~~~~~~~~~It~~~v 237 (363)
T PRK14961 158 DVEKIPKTILSRCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHGSMRDALNLLEHAINLGKGNINIKNV 237 (363)
T ss_pred ChHhhhHHHHhhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998788999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cCCch-hHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IKDSP-NYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~~~~-~~~~~~~~ 695 (1342)
.++++...+..+|++++++..++...++.+++++...|++|..++.+|...+|+++..|...+.. ....+ ....+.++
T Consensus 238 ~~~l~~~~~~~i~~l~~ai~~~~~~~~~~~~~~l~~~g~~~~~il~~l~~~~~d~l~~~~~~~~~~~~~~~~~~~~~~~~ 317 (363)
T PRK14961 238 TDMLGLLNEKQSFLLTDALLKKDSKKTMLLLNKISSIGIEWENILIEMLRFLHHISMSQSFPKIWNTIFIKNYKNQIQKI 317 (363)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhcccchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999876542 33344 56789999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~ 739 (1342)
++++|.++|.++++.+.++..+||.+.++++++|+++++++.+.
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~e~~l~~~~~~~ 361 (363)
T PRK14961 318 AQNNKKTNIQLCYQILLNGRKELKFAPDQKIGVEMTLLRAINAI 361 (363)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHccCCCchHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999999999999999874
No 29
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.9e-48 Score=486.72 Aligned_cols=354 Identities=34% Similarity=0.574 Sum_probs=332.6
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
++|++||||++|++|+||+++++.|.+++.+++++|+|||+||+|+|||++|+.|++.|+|.. +.+..+|+.|.+
T Consensus 3 ~~l~~KyRP~~f~eiiGqe~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~-----~~~~~pCg~C~s 77 (824)
T PRK07764 3 LALYRRYRPATFAEVIGQEHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLNCVE-----GPTSTPCGECDS 77 (824)
T ss_pred hhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhCccc-----CCCCCCCcccHH
Confidence 578999999999999999999999999999999999999999999999999999999999963 345569999999
Q ss_pred hhhhccC--CCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 459 CVKIDNG--CFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 459 ~~~~~~~--~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
|..+..+ .++|+++++..+..++++++++.+.+...|..+++||+||||+|+|+.+.+|+|+++||+++++++|||+|
T Consensus 78 C~~~~~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 78 CVALAPGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred HHHHHcCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEe
Confidence 9999988 67899999998888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC-CCCCHH
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-EKITLN 615 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~-~~It~e 615 (1342)
++.++++++|+|||++++|.+++.+++.+||.++++++|+.++++++.+|++.++||+|+++++|+|++.+++ +.||.+
T Consensus 158 t~~~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgGdlR~Al~eLEKLia~~~~~~IT~e 237 (824)
T PRK07764 158 TEPDKVIGTIRSRTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGGSVRDSLSVLDQLLAGAGPEGVTYE 237 (824)
T ss_pred CChhhhhHHHHhheeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhhcCCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999998864 569999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc---cc--CCchhHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI---LI--KDSPNYN 690 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~---~~--~~~~~~~ 690 (1342)
+|.++++......+|++++++..+|...++.++++|+..|+++..++.+|.++||+|+.+|...+. .. ...+...
T Consensus 238 ~V~allg~~~~~~I~~lidAL~~~D~a~al~~l~~Li~~G~dp~~~L~~LL~~fRDLL~vka~~~~~~~~l~~~p~d~~~ 317 (824)
T PRK07764 238 RAVALLGVTDSALIDEAVDALAAGDGAALFGTVDRVIEAGHDPRRFAEDLLERLRDLIVLQAVPDAAERGLVDAPADQLD 317 (824)
T ss_pred HHHHHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCcchhhhhccCCHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999976532 11 2366778
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 691 EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 691 ~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
++.+++++|+.++|.++++.+.++...+|++.++++.+|+++++|+.
T Consensus 318 ~L~~qA~~~s~~~L~r~ie~l~ea~~~lrgn~nprL~LElLllrLll 364 (824)
T PRK07764 318 RMRAQAQRLGPAELTRAADVVNDGLTEMRGATSPRLLLELLCARMLL 364 (824)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHh
Confidence 89999999999999999999999988999999999999999999984
No 30
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=6.1e-48 Score=452.87 Aligned_cols=355 Identities=35% Similarity=0.534 Sum_probs=327.8
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||++++..|.+++.+++++|+|||+||+|+|||++|+.+|+.++|.. +.+..+|+.|.
T Consensus 5 ~~~L~~KyRP~~f~dvVGQe~iv~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~-----~~~~~pCg~C~ 79 (484)
T PRK14956 5 HEVLSRKYRPQFFRDVIHQDLAIGALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNCEN-----PIGNEPCNECT 79 (484)
T ss_pred cchhHHHhCCCCHHHHhChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCccc-----ccCccccCCCc
Confidence 5689999999999999999999999999999999999999999999999999999999999964 33467999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.+++++++++++..++++++++++.+...|..++++|+||||+|+|+.+++|+|++++|+||.+++||++|+
T Consensus 80 sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTt 159 (484)
T PRK14956 80 SCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATT 159 (484)
T ss_pred HHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecC
Confidence 99999999999999999988889999999999999889889999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||+.+.|.+++.+++.+++.++++++|+.++++++..|++.++|++|++++.||+++.++++.||.+.|
T Consensus 160 e~~kI~~TI~SRCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~Gd~RdAL~lLeq~i~~~~~~it~~~V 239 (484)
T PRK14956 160 EFHKIPETILSRCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDGSVRDMLSFMEQAIVFTDSKLTGVKI 239 (484)
T ss_pred ChhhccHHHHhhhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCChHHHHHHHHHHHHHhCCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888778999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccCh-HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCc-cc--ccCCchhHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDG-NLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP-EI--LIKDSPNYNEII 693 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~-~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~-~~--~~~~~~~~~~~~ 693 (1342)
.++++....+.++++++++..++. ..++..+++++..|++|..++..|+.+||+++.++... .. .....+..+.+.
T Consensus 240 ~~~lg~~~~~~~~~l~~si~~~d~~~~al~~l~~l~~~G~d~~~~~~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~ 319 (484)
T PRK14956 240 RKMIGYHGIEFLTSFIKSLIDPDNHSKSLEILESLYQEGQDIYKFLWDSIEFTHTLNLIRDSLADRESVNFPKEDLQKMK 319 (484)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcccchhhccCCHHHHHHHH
Confidence 999999999999999999999875 68999999999999999999999999999999998752 22 222345667799
Q ss_pred HHHhcCCHHHHHHHHHHHHH----H-HHhhccCCChhHHHHHHHHHhHc
Q psy13354 694 QLSKKFNIEQIQLFYQISIH----G-RNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 694 ~~a~~~s~~~L~~~l~~l~~----~-d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
++++.++...|.++...+.+ + +..+|++.+|++.+|+.++++|.
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~r~~~E~~~~~l~~ 368 (484)
T PRK14956 320 SDFENVDSSKLNFLSGKLFEIYEKIKTIRLRNSFEIKVFTEIQIKKLVE 368 (484)
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHHHHhhhccCCCchHHHHHHHHHHhc
Confidence 99999999999988765532 2 45678899999999999999984
No 31
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.2e-47 Score=461.01 Aligned_cols=359 Identities=45% Similarity=0.772 Sum_probs=336.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+++.++|.. +.+..+|+.|.
T Consensus 3 y~~La~KyRP~~f~diiGq~~~v~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~-----~~~~~pCg~C~ 77 (546)
T PRK14957 3 YQALARKYRPQSFAEVAGQQHALNSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKT-----GVTAEPCNKCE 77 (546)
T ss_pred chhHHHHHCcCcHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC-----CCCCCCCcccH
Confidence 5789999999999999999999999999999999999999999999999999999999999963 34557999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++|++++++++..++++++++++.+.+.|+++++||+||||+|.|+.+++++|++++|+||++++||++|+
T Consensus 78 sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~fIL~Tt 157 (546)
T PRK14957 78 NCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKFILATT 157 (546)
T ss_pred HHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceEEEEEC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+..+++++|+|||..++|.+++.+++.+||.++++++|+.++++++++|++.++||+|+++++|++++.|+++.|+.++|
T Consensus 158 d~~kil~tI~SRc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~GdlR~alnlLek~i~~~~~~It~~~V 237 (546)
T PRK14957 158 DYHKIPVTILSRCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKGSLRDALSLLDQAISFCGGELKQAQI 237 (546)
T ss_pred ChhhhhhhHHHheeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
+++++....+.+|++++++..++...++..++.+...+.+...+|..|...+..++.++........+.+....+.+++.
T Consensus 238 ~~~l~~~~~~~v~~ll~Al~~~d~~~~l~~~~~l~~~~~~~~~~l~~l~~~~~r~~~~~~~~~~~~~~~~~~~~i~~~a~ 317 (546)
T PRK14957 238 KQMLGIIDSEEVYSIINAIIDNDPKAILPAIKNLALTESSADAVLDRIAEIWFACCIYSFTQSLDAVNDIDVDIINNILA 317 (546)
T ss_pred HHHHccCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhcccccccchhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999994444477777766544455556678999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
++|.++|+.+++.+..+...|+.+.+++++|||+++||+.+.|-
T Consensus 318 ~~s~~~l~~~~~~~~~~~~~l~~~~~~~~~~em~l~r~~~~~p~ 361 (546)
T PRK14957 318 KISIEQAHFLYQLTITAKKDIALAPNFETGVTMAILRLIAFQKK 361 (546)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999763
No 32
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.3e-47 Score=460.03 Aligned_cols=360 Identities=34% Similarity=0.630 Sum_probs=336.7
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||||++|++++||+++++.|.+++++++++|+|||+||+|+|||++|+.+++.++|.. ..+..+|+.|.
T Consensus 3 ~~~la~KyRP~sf~dIiGQe~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~-----~~~~~pCg~C~ 77 (624)
T PRK14959 3 HASLTARYRPQTFAEVAGQETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALNCET-----APTGEPCNTCE 77 (624)
T ss_pred cchHHHHhCCCCHHHhcCCHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhccccC-----CCCCCCCcccH
Confidence 4589999999999999999999999999999999999999999999999999999999999953 23456999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++.+.+...|++++++||||||+|+|+.+.+++|++++|+|+++++||++|+
T Consensus 78 sC~~i~~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt 157 (624)
T PRK14959 78 QCRKVTQGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATT 157 (624)
T ss_pred HHHHHhcCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.++|+|||+.++|.+++.+++..||.++++++|+.+++++++.|++.++||+|+++++|++++....+.||.++|
T Consensus 158 ~~~kll~TI~SRcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~GdlR~Al~lLeqll~~g~~~It~d~V 237 (624)
T PRK14959 158 EPHKFPVTIVSRCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAGSVRDSMSLLGQVLALGESRLTIDGA 237 (624)
T ss_pred ChhhhhHHHHhhhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999987666678999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc----ccCCchhHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI----LIKDSPNYNEII 693 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~----~~~~~~~~~~~~ 693 (1342)
.++++....+++|++++++..++...++.++.+|...|+++..++..|..+||+++.++..... .....+..+.+.
T Consensus 238 ~~~lg~~~~e~vfeLl~AL~~~D~~aal~~l~~Ll~~g~d~~~iL~~Ll~~~RdLLl~k~~~~~~~~~l~i~~~~~~~~~ 317 (624)
T PRK14959 238 RGVLGLAGQELFLRLMEALAAQDCLGVANVVRELLDRGVDMGFFLRELVATWRNLFMLRQAGEAALASLDLPEDEARQWL 317 (624)
T ss_pred HHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhccccchhhcccCHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999865332 233455667789
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 694 QLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 694 ~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
+++++||..+|..+++.++++...|+.+.++++++|+++++++.++++.
T Consensus 318 ~~A~~~s~~~L~~~l~~il~~~~~l~~n~n~rl~lE~lLL~l~~~~~~~ 366 (624)
T PRK14959 318 GWAKRFEPAHIHACWQMTLEGQRRVLTSLEPAMALELLLLNLAMLPRLM 366 (624)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhccCCC
Confidence 9999999999999999999999999999999999999999999887664
No 33
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=3.7e-47 Score=466.44 Aligned_cols=357 Identities=48% Similarity=0.812 Sum_probs=335.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|++++..++++|+|||+||+|+|||++|+++++.++|.. ..+..+|+.|.
T Consensus 3 Y~~LaeKyRP~tFddIIGQe~Iv~~LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~-----~~~~~pCg~C~ 77 (944)
T PRK14949 3 YQVLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQ-----GVTATPCGVCS 77 (944)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccCcc-----CCCCCCCCCch
Confidence 5789999999999999999999999999999999999999999999999999999999999963 23557999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.+++++++++++..++++++++++.+...|..+++||+||||+|+|+.+++|+|+++||+||.+++||++|+
T Consensus 78 sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTT 157 (944)
T PRK14949 78 SCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATT 157 (944)
T ss_pred HHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECC
Confidence 99999999999999999987789999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++.+++++|+|||.+++|.+++.+++..+|.+++..+++.++++++..|++.++|++|++++++++++.+..+.++.+.|
T Consensus 158 e~~kLl~TIlSRCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~Gd~R~ALnLLdQala~~~~~It~~~V 237 (944)
T PRK14949 158 DPQKLPVTVLSRCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANGSMRDALSLTDQAIAFGGGQVMLTQV 237 (944)
T ss_pred CchhchHHHHHhheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCcccHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999888888999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc--ccCCchhHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI--LIKDSPNYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~--~~~~~~~~~~~~~~ 695 (1342)
.++++......+..+++++..++...++..++.|+..|.++..|+..|..+||+++..|..... .... ...+.++
T Consensus 238 ~~llG~iD~~~V~~llksI~~~D~~aaL~~l~~Ll~~G~D~~~ILr~Ll~~lRDill~k~~~~~~~l~i~---~e~i~~~ 314 (944)
T PRK14949 238 QTMLGSIDEQHVIALLKALTDADIGVLMQTCAQVLAFGADAQEVLRSLLELLHQITLTQFAPAAAQQSLY---SEQIRAF 314 (944)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccchhhccch---HHHHHHH
Confidence 9999999988999999999999999999999999999999999999999999999998876541 1111 2568889
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
+.++|.++|.++++++.++...||.+.++++.||+++++++.+.|..
T Consensus 315 a~~~s~~~L~~~ie~l~~a~~~L~~n~n~rl~lE~~LLrl~~~~p~~ 361 (944)
T PRK14949 315 AEQLSPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVAFVPEK 361 (944)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999999999999999999999999986654
No 34
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.3e-46 Score=452.14 Aligned_cols=346 Identities=37% Similarity=0.604 Sum_probs=328.1
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.++++.|+++|+||||||+|+|||++|+.+++.+.|.... ....+|+.|.
T Consensus 4 ~~~~~~kyRP~~~~diiGq~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~----~~~~~c~~c~ 79 (451)
T PRK06305 4 YQVSSRKYRPQTFSEILGQDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPT----EDQEPCNQCA 79 (451)
T ss_pred hHHHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcc----cCCCCCcccH
Confidence 568999999999999999999999999999999999999999999999999999999999996432 2346899999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.++++.++++.+..++++++++.+.+...|.+++++||||||+|.++.++++.|++++|+|+++++||++++
T Consensus 80 ~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~Il~t~ 159 (451)
T PRK06305 80 SCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFFLATT 159 (451)
T ss_pred HHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEEEEeC
Confidence 99999999999999999877788999999999888888889999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.++|+|||..++|.+++.+++.+|+..+++++|+.+++++++.|++.++||+|.++++++++..|.++.||.++|
T Consensus 160 ~~~kl~~tI~sRc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~gdlr~a~~~Lekl~~~~~~~It~~~V 239 (451)
T PRK06305 160 EIHKIPGTILSRCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQGSLRDAESLYDYVVGLFPKSLDPDSV 239 (451)
T ss_pred ChHhcchHHHHhceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCcCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999887777999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHh
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~ 697 (1342)
.++++...++++|+|++++..++...|+.++++|...|++|..++.+|.++||+++.+|.. +.+.++++
T Consensus 240 ~~l~~~~~~~~vf~L~~ai~~~d~~~al~~l~~L~~~g~~~~~iL~~L~~~fR~ll~vk~~-----------~~~~~~a~ 308 (451)
T PRK06305 240 AKALGLLSQDSLYTLDEAITTQNYAQALEPVTDAMNSGVAPAHFLHDLTLFFRNILLKQYN-----------KQLSSVAT 308 (451)
T ss_pred HHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHHHhhh-----------hHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999762 35788999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+||.++|.+++..+.++|+++|++.++.+.||+++++++.+
T Consensus 309 ~~s~~~L~~ii~~l~e~d~~lk~~~~~k~~lE~lll~l~~~ 349 (451)
T PRK06305 309 KYSSEQLLEIIDFLGESAKHIQLTIFEKTFLETVIIHLIRI 349 (451)
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 99999999999999999999999989999999999999974
No 35
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=100.00 E-value=7.1e-46 Score=441.29 Aligned_cols=353 Identities=44% Similarity=0.749 Sum_probs=333.0
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||+|.+|++++||+.+++.|.+++++|+++|+||||||||+|||++|+.+++.+.|.. ..+..+|+.|++
T Consensus 2 ~~~~~~~rp~~~~~iig~~~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~-----~~~~~~c~~c~~ 76 (355)
T TIGR02397 2 QVLARKYRPQTFEDVIGQEHIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALNCQN-----GPDGEPCNECES 76 (355)
T ss_pred ccHHHHhCCCcHhhccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCCCCHH
Confidence 479999999999999999999999999999999999999999999999999999999999862 234579999999
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
|..+..+.++++.++++....++++++++++.+.+.|+++++|||||||++.++...++.|++++++||+++++|+++++
T Consensus 77 c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~lIl~~~~ 156 (355)
T TIGR02397 77 CKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVFILATTE 156 (355)
T ss_pred HHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeEEEEeCC
Confidence 99999999999999998877788899999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy13354 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618 (1342)
Q Consensus 539 ~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~ 618 (1342)
++++.++|++||..++|.+++.+++.+|+..+++++|+.+++++++.+++.++||+|.+.++++++..|+++.||.++|+
T Consensus 157 ~~~l~~~l~sr~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g~~~~a~~~lekl~~~~~~~it~~~v~ 236 (355)
T TIGR02397 157 PHKIPATILSRCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADGSLRDALSLLDQLISFGNGNITYEDVN 236 (355)
T ss_pred HHHHHHHHHhheeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCChHHHHHHHHHHHhhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCc-ccccCCchhHHHHHHHHh
Q psy13354 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP-EILIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 619 ~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~-~~~~~~~~~~~~~~~~a~ 697 (1342)
+++....+.++|++++++..++...|+.+++++...|++|..++.+|.++||+++.+|... .....+++..+.+.++++
T Consensus 237 ~~~~~~~~~~i~~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~~r~l~~~k~~~~~~~~i~~~~~~~l~~~a~ 316 (355)
T TIGR02397 237 ELLGLVDDEKLIELLEAILNKDTAEALKILDEILESGVDPEKFLEDLIEILRDLLLIKKTPSNLLAVLESEQEFLKELAL 316 (355)
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999754 333355566788899999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhH
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRML 736 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~ 736 (1342)
+||.++|..+++.+.++|+.+|++.|+++.+|.+++++|
T Consensus 317 ~~s~~~L~~~l~~l~~~~~~lk~~~~~~l~le~l~~~~~ 355 (355)
T TIGR02397 317 KLSLEFLLRLLDILLEALKDLRFSNDPRIWLEMTLLRLL 355 (355)
T ss_pred hCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHhC
Confidence 999999999999999999999999999999999999997
No 36
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=5.7e-46 Score=462.37 Aligned_cols=356 Identities=37% Similarity=0.572 Sum_probs=335.1
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||||++|++++||+++++.|.+++..++++|+||||||+|+|||++|+.+++.++|.... .+..+|+.|..
T Consensus 4 ~~l~~kyRP~~~~eiiGq~~~~~~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~----~~~~~c~~c~~ 79 (585)
T PRK14950 4 QVLYRKWRSQTFAELVGQEHVVQTLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVNCTTND----PKGRPCGTCEM 79 (585)
T ss_pred HHHHHHhCCCCHHHhcCCHHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCC----CCCCCCccCHH
Confidence 46899999999999999999999999999999999999999999999999999999999996532 23469999999
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
|..+..+.++|+++++.+...++++++++++.+...|+++++|||||||+|.|+.+.++.|++++|+|+++++||+++++
T Consensus 80 c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~ 159 (585)
T PRK14950 80 CRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTE 159 (585)
T ss_pred HHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 99999999999999998777889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy13354 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618 (1342)
Q Consensus 539 ~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~ 618 (1342)
.+++.++|+|||..++|.+++..++..|+..+++++|+.+++++++.|++.++||+|.++++|+++..|.++.||.++|+
T Consensus 160 ~~kll~tI~SR~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~Gdlr~al~~LekL~~y~~~~It~e~V~ 239 (585)
T PRK14950 160 VHKVPATILSRCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATGSMRDAENLLQQLATTYGGEISLSQVQ 239 (585)
T ss_pred hhhhhHHHHhccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988889999999
Q ss_pred HHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc--ccCCchhHHHHHHHH
Q psy13354 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI--LIKDSPNYNEIIQLS 696 (1342)
Q Consensus 619 ~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~--~~~~~~~~~~~~~~a 696 (1342)
++++.+.+.++|++++++..+|...+++++++|...|+++..+++.|.++||+++.++..... ...+.+..+.+.+++
T Consensus 240 ~ll~~s~~~~vf~Lidal~~~d~~~al~~l~~L~~~g~~~~~il~~L~~~lR~Ll~lk~g~~~~~l~i~p~~~~~~~~qa 319 (585)
T PRK14950 240 SLLGISGDEEVKALAEALLAKDLKAALRTLNAVAADGADLRQFTRDLVEYLRQVMLLNSGADRSLLDLTADEKAALQKVS 319 (585)
T ss_pred HHhcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhcCccccccCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875432 234566778899999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
++||.++|.++++.+.++|+++|++.++++.+|++++++|..
T Consensus 320 ~~~s~~~L~~~l~~l~~~D~~lK~~~~~~l~lE~~l~~~~~~ 361 (585)
T PRK14950 320 QIANLEALTKWVKAFSQLDFQLRTTSYGQLPLELAVIEALLV 361 (585)
T ss_pred hcCCHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHhcC
Confidence 999999999999999999999998777899999999999964
No 37
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=6.8e-46 Score=454.30 Aligned_cols=358 Identities=37% Similarity=0.638 Sum_probs=327.7
Q ss_pred HHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 377 IKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 377 ~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
.+.+|++||||++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+++|+.++|... .....||+.|
T Consensus 4 ~y~~l~~KyRP~~f~dIiGQe~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~----~~~~~pC~~C 79 (725)
T PRK07133 4 KYKALYRKYRPKTFDDIVGQDHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALNCSHK----TDLLEPCQEC 79 (725)
T ss_pred chhhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhccccc----CCCCCchhHH
Confidence 468999999999999999999999999999999999999999999999999999999999999642 2234678888
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
..| .+.++|++++++++..++++++++++.+.+.|+++++||+||||+|+|+.+++++|+++||+||++++||++|
T Consensus 80 ~~~----~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 80 IEN----VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred HHh----hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEc
Confidence 877 3568899999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHH
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNS 616 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~ 616 (1342)
+++++++++|+|||++++|.+++.+++..||..+++++|+.+++++++.+++.++|++|+++++++++..|+.++||.++
T Consensus 156 te~~KLl~TI~SRcq~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~GslR~AlslLekl~~y~~~~It~e~ 235 (725)
T PRK07133 156 TEVHKIPLTILSRVQRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSGSLRDALSIAEQVSIFGNNKITLKN 235 (725)
T ss_pred CChhhhhHHHHhhceeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhccCCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999877899999
Q ss_pred HHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc-ccCCchhHHHHHHH
Q psy13354 617 MQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI-LIKDSPNYNEIIQL 695 (1342)
Q Consensus 617 V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~-~~~~~~~~~~~~~~ 695 (1342)
|.++++....+.+|++++++..++...++.++++|...|++|..++.+|...+|+++.++..... +....+. ..+.+.
T Consensus 236 V~ellg~~~~e~If~Ll~aI~~kd~~~aL~~l~~L~~~ged~~~iL~~Ll~~~RDlLl~k~~~~~~ll~~~d~-~~l~~~ 314 (725)
T PRK07133 236 VEELFGLVSNENLINLLNLLYSKDIKEVLNILNQIKEQGIDPELLLISLINLVKEFIIFNKTKDNSLLEYYSE-EDLEKL 314 (725)
T ss_pred HHHHHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcCchhhhccCCH-HHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999988754332 2222222 334443
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccccccc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHNHL 745 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~~~ 745 (1342)
+++..+|..+++.+.++...|+.+.++++.+|+++++++.+++++.+.
T Consensus 315 --~~s~~~l~~~le~i~~~~~~L~~n~n~~l~lE~lll~L~~~~~~~~~~ 362 (725)
T PRK07133 315 --KIDDDFAYKFIEILFDLLKDLKISDNPNDTLEILIIKLLALSELEEED 362 (725)
T ss_pred --cCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhcCCCchhH
Confidence 789999999999999999999999999999999999999988776544
No 38
>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=5.2e-45 Score=403.85 Aligned_cols=375 Identities=64% Similarity=1.026 Sum_probs=359.1
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
..+...+|.+++.+..+..++++.|.|.+|||+.|+.|++|+.+.+.++|.+|||+.+||++++..+++|..+.++.+++
T Consensus 5 ~~l~~~d~~i~~~i~~e~~rq~~~ieLIASEN~~S~aV~~A~gS~ltnKYAEGyPgkRyYgGce~VD~vE~laierak~L 84 (413)
T COG0112 5 ASLADYDPEIFEAIQQELERQREHIELIASENFTSPAVMEAQGSDLTNKYAEGYPGKRYYGGCEYVDEVEELAIERAKKL 84 (413)
T ss_pred hhHHhcCHHHHHHHHHHHHHHhhceeeeeccccCCHHHHHHHhhhhhhccccCCCCccccCCCeeHHHHHHHHHHHHHHH
Confidence 35566889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHh
Q psy13354 86 FNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKK 164 (1342)
Q Consensus 86 ~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~ 164 (1342)
||++.+.+.+.||+.||.+++.++++|||+|+.+++.+++|.+++......|..++.++++++ +++.+|+|++++.+.+
T Consensus 85 Fga~~anVQPhSGs~AN~av~~All~pGDtimgm~l~~GGHltHg~~v~~sG~~~~~v~Y~vd~et~~IDyD~~~k~a~e 164 (413)
T COG0112 85 FGAEYANVQPHSGSQANQAVYLALLQPGDTIMGLDLSHGGHLTHGSPVNFSGKLFNVVSYGVDPETGLIDYDEVEKLAKE 164 (413)
T ss_pred hCCCccccCCCCchHHHHHHHHHHcCCCCeEecccCCCCCcccCCCCCCccceeEEeEecccccccCccCHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999888999999999999999 7799999999999999
Q ss_pred cCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec-
Q psy13354 165 NKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK- 243 (1342)
Q Consensus 165 ~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~- 243 (1342)
++|++|+...|.|+...|++++.++|++.|++|++|.||-+|.+.++.+++|++.+|++++|.||+|.||.||+|++++
T Consensus 165 ~kPK~ii~G~SaY~r~id~~~~reIad~VGA~L~~DmAHiaGLVA~G~~p~P~~~AdvVTtTTHKTlrGPrGG~Il~~~e 244 (413)
T COG0112 165 VKPKLIIAGGSAYSRPIDFKRFREIADEVGAYLMVDMAHVAGLIAGGVHPNPLPHADVVTTTTHKTLRGPRGGIILTNDE 244 (413)
T ss_pred hCCCEEEECccccccccCHHHHHHHHHHhCceEEehHHHHHHHHhcccCCCCCCccceEeCCcccCCCCCCceEEEeccH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999996
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
++.+.++...+|+..++|..+.++|.+.++.+.++.+++++.++..+|++.|.+.|.+.|++++++++++|.+.+++...
T Consensus 245 el~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk~Ya~qVv~NAkaLAe~l~~~G~~vvsGgTdnHl~lVDl~~~ 324 (413)
T COG0112 245 ELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFKEYAKQVVKNAKALAEALKERGFKVVSGGTDNHLVLVDLRSK 324 (413)
T ss_pred HHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHHHHcCCeEecCCccceEEEEEcccC
Confidence 89999999999999999999999999999999999899999999999999999999999999999999999999999966
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
+.+...+..+|++.||.+....+|..+..++-+++||+++.+.|++++.+.++..++
T Consensus 325 ~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~tSGIRiGtpa~TtrG~~e~e~~~Ia 381 (413)
T COG0112 325 GLTGKKAEAALERAGITVNKNAIPFDPESPFVTSGIRIGTPAVTTRGFGEAEMEEIA 381 (413)
T ss_pred CCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCCccceeccHHHhhcCCCHHHHHHHH
Confidence 678899999999999999999999998888889999999999999999988876544
No 39
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.9e-44 Score=442.10 Aligned_cols=358 Identities=38% Similarity=0.623 Sum_probs=334.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|..||+|++|++++||+++++.|.+++..++++|+|||+||+|+|||++|+.+|+.++|.... .++..+|+.|.
T Consensus 3 ~~pl~~kyRP~~f~~liGq~~i~~~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~---~~~~~~Cg~C~ 79 (620)
T PRK14948 3 YEPLHHKYRPQRFDELVGQEAIATTLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSD---KPTPEPCGKCE 79 (620)
T ss_pred cchHHHHhCCCcHhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcCCCcC---CCCCCCCcccH
Confidence 457999999999999999999999999999999999999999999999999999999999996432 23457999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
.|..+..+.|+|+++++.....+++.++++++.+...|+++++|||||||+|.|+.+++++|+++||+|+.+++||++++
T Consensus 80 ~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~ 159 (620)
T PRK14948 80 LCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATT 159 (620)
T ss_pred HHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeC
Confidence 99999999999999999887789999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.++|+|||..++|.+++.+++..|+..+++++|+.++++++..+++.++|++|++.++++++..|. +.||.++|
T Consensus 160 ~~~~llpTIrSRc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G~lr~A~~lLeklsL~~-~~It~e~V 238 (620)
T PRK14948 160 DPQRVLPTIISRCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQGGLRDAESLLDQLSLLP-GPITPEAV 238 (620)
T ss_pred ChhhhhHHHHhheeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcc-CCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999988775 57999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc---cCCchhHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL---IKDSPNYNEIIQ 694 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~---~~~~~~~~~~~~ 694 (1342)
.++++...+..+|++++++..++...++.++++|+..|+++..+|.+|+++||+++.+|...+.. ..+.+..+.+.+
T Consensus 239 ~~lvg~~~e~~i~~Ll~ai~~~d~~~al~~~~~Ll~~g~~p~~iL~~L~~~~RDLL~~K~~~~~~~l~~i~~d~~~~l~~ 318 (620)
T PRK14948 239 WDLLGAVPEQDLLNLLKALASNDPESLLDSCRQLLDRGREPLAILQGLAAFYRDLLLAKTAPNRPDLVAVSQQTWDELCK 318 (620)
T ss_pred HHHhcCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhcccchhhhhcCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999865431 123455677899
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~ 739 (1342)
++++|+..+|.++++.+.++|+.+|++.++++++|.++++++...
T Consensus 319 ~A~~~s~~~L~~~i~~L~eae~~LK~n~nprL~LE~lLl~l~~~~ 363 (620)
T PRK14948 319 LAKQINLERILQWQQHLKGSEYQLKNSTQPRLWLEVTLLGLLPSA 363 (620)
T ss_pred HHhhCCHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHhhccC
Confidence 999999999999999999999999999999999999999998753
No 40
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=1.5e-43 Score=425.19 Aligned_cols=336 Identities=43% Similarity=0.703 Sum_probs=313.9
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
+|++||||++|++++||+++++.|.++++.|+++|+||||||+|+|||++|+.+++.+.|.. +.+..||+.|.+|
T Consensus 3 ~l~~KyRP~~fdeiiGqe~v~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~-----~~~~~pC~~C~~C 77 (535)
T PRK08451 3 ALALKYRPKHFDELIGQESVSKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARALVCEQ-----GPSSTPCDTCIQC 77 (535)
T ss_pred cHHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCC-----CCCCCCCcccHHH
Confidence 78999999999999999999999999999999999999999999999999999999999863 2345799999999
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEP 539 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~ 539 (1342)
..+..+.|++++++++++..++++++++++.....|+++++||+||||+|.|+.+++++|++++|+||++++|||+++++
T Consensus 78 ~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~ 157 (535)
T PRK08451 78 QSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDP 157 (535)
T ss_pred HHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECCh
Confidence 99999999999999998878999999999998889999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy13354 540 QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619 (1342)
Q Consensus 540 ~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~ 619 (1342)
.+++++|+|||..++|.+++.+++..|+.++++++|+.+++++++.|++.++||+|+++++|++++.|+.+.||.++|.+
T Consensus 158 ~kL~~tI~SRc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~GdlR~alnlLdqai~~~~~~It~~~V~~ 237 (535)
T PRK08451 158 LKLPATILSRTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNGSLRDTLTLLDQAIIYCKNAITESKVAD 237 (535)
T ss_pred hhCchHHHhhceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999988899999999
Q ss_pred HhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcC
Q psy13354 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKF 699 (1342)
Q Consensus 620 ~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~ 699 (1342)
+++....+.+|++++++..++...++.+++++ .|.++..++..|..++++++... ...+
T Consensus 238 ~lg~~~~~~I~~li~ai~~~d~~~a~~~l~~L--~g~~~~~~l~~l~~~l~~~~~~~-------------------~~~~ 296 (535)
T PRK08451 238 MLGLLDPSKLEDFFQAILNQDKEKLFELLKEL--EDYEAEMVLDEMMLFLKEKFLSK-------------------DSEF 296 (535)
T ss_pred HhCCCCHHHHHHHHHHHHhcCHHHHHHHHHHH--HCCCHHHHHHHHHHHHHHHhhcc-------------------cccc
Confidence 99999999999999999999999999999998 46889999999999998875321 1135
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHccccc
Q psy13354 700 NIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTL 741 (1342)
Q Consensus 700 s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l 741 (1342)
+...+.+.++++.+++..++.+.++++.+|+++++||...++
T Consensus 297 ~l~~l~r~~riL~~~k~~l~~g~~~~i~l~~~~~~~~~~~~~ 338 (535)
T PRK08451 297 SILLYERFFRILSSAKSLLKEGADDGFVLLLMLFKMKEALKL 338 (535)
T ss_pred cHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCc
Confidence 566788999999999999999999999999999999986444
No 41
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=4.8e-43 Score=424.18 Aligned_cols=339 Identities=34% Similarity=0.539 Sum_probs=312.4
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
+|++||||++|++++||+++++.|.+++..++++|+||||||+|+|||++|+++++.++|.+. ...+|+.|.+|
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~------~~~~cg~C~sc 76 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGE------DPKPCGECESC 76 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHhccCC------CCCCCCcChhh
Confidence 689999999999999999999999999999999999999999999999999999999998642 23599999999
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEP 539 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~ 539 (1342)
..+..+.|+|+.++++++..++++++++.+.+...|++++++||||||+|.++.+.+++|++++++|+++++||++++++
T Consensus 77 ~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~ 156 (504)
T PRK14963 77 LAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEP 156 (504)
T ss_pred HHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCCh
Confidence 99999999999999998888899999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy13354 540 QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619 (1342)
Q Consensus 540 ~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~ 619 (1342)
+++.++++|||..++|.+++.+++..||.++++++|+.++++++++|++.++||+|+++++|++++.+ ++.||.++|.+
T Consensus 157 ~kl~~~I~SRc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~GdlR~aln~Lekl~~~-~~~It~~~V~~ 235 (504)
T PRK14963 157 EKMPPTILSRTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADGAMRDAESLLERLLAL-GTPVTRKQVEE 235 (504)
T ss_pred hhCChHHhcceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCCCHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999998876 55799999999
Q ss_pred HhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcC
Q psy13354 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKF 699 (1342)
Q Consensus 620 ~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~ 699 (1342)
+++...++++|++++++..++...|+.++++|+..|++|..|+..|.++||.++++|.+...... ..+
T Consensus 236 ~l~~~~~~~if~Li~al~~~d~~~Al~~l~~Ll~~G~~~~~Il~~L~~~~r~ll~~k~~~~~~~~------------~~~ 303 (504)
T PRK14963 236 ALGLPPQERLRGIAAALAQGDAAEALSGAAQLYRDGFAARTLVEGLLEAFRAALYAELGLGGGPR------------LEG 303 (504)
T ss_pred HHCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHhccCcccc------------ccc
Confidence 99999999999999999999999999999999999999999999999999999999976432210 013
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 700 NIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 700 s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+...+..++..+.+.++.+-.+.+ +..+|+.++++|..
T Consensus 304 ~~~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~l~~~~~~ 341 (504)
T PRK14963 304 AEPRLLAAMTALDEQMERFARRSD-ALSLELALLHALLA 341 (504)
T ss_pred CcHHHHHHHHHHHHHHHHHHhccc-hhHHHHHHHHHHhh
Confidence 446788899999999988665443 56799999999963
No 42
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=1.9e-42 Score=412.13 Aligned_cols=344 Identities=36% Similarity=0.536 Sum_probs=315.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+++|++||+|.+|++++||+.+++.+.+.+++|+++|+||||||||+|||++++.+++.++|.... .+|
T Consensus 4 ~~~~~~k~rP~~~~~iig~~~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~-------~~~---- 72 (367)
T PRK14970 4 FVVSARKYRPQTFDDVVGQSHITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQPGYD-------DPN---- 72 (367)
T ss_pred hHHHHHHHCCCcHHhcCCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCC-------CCC----
Confidence 578999999999999999999999999999999999999999999999999999999999874211 011
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
.....++++++.....++++++++++++...|+++++++|+|||++.++...++.|++++++|++++++|++++
T Consensus 73 ------~~~~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~ 146 (367)
T PRK14970 73 ------EDFSFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATT 146 (367)
T ss_pred ------CCCCcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeC
Confidence 11234567777766677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
+++++.+++.|||.+++|.+++++++..|+...++++|+.++++++++|++.++||+|.+.++++++..|+++.||.++|
T Consensus 147 ~~~kl~~~l~sr~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~gdlr~~~~~lekl~~y~~~~it~~~v 226 (367)
T PRK14970 147 EKHKIIPTILSRCQIFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADGALRDALSIFDRVVTFCGKNITRQAV 226 (367)
T ss_pred CcccCCHHHHhcceeEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998777999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc--ccCCchhHHHHHHH
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI--LIKDSPNYNEIIQL 695 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~--~~~~~~~~~~~~~~ 695 (1342)
+++++...++++|++++++..++...++.+++++...|++|..|+.+|.++||+++++|...+. ...+++..+.+.++
T Consensus 227 ~~~~~~~~~~~if~l~~ai~~~~~~~a~~~~~~l~~~~~~~~~il~~l~~~fr~ll~~k~~~~~~~l~~~~~~~~~~~~~ 306 (367)
T PRK14970 227 TENLNILDYDTYINVTDLILENKIPELLLAFNEILRKGFDGHHFIAGLASHFRDLMVSKTPATIALLEVGEQAKKRYEVQ 306 (367)
T ss_pred HHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhccCccccccCCHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999874321 23446778889999
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+++||.++|.+++..+.++|.++|++.++++.+|++++++|..
T Consensus 307 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~l~lE~~l~~l~~~ 349 (367)
T PRK14970 307 SQKVSQSFLLSGIDIANDCDLKYKLSKNQRLLVELALMQLASI 349 (367)
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHhhc
Confidence 9999999999999999999999999889999999999999874
No 43
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=100.00 E-value=5.2e-43 Score=421.37 Aligned_cols=353 Identities=36% Similarity=0.633 Sum_probs=318.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+.+|++||||++|++++||+++++.|.+++.+++++|+|||+||+|+|||++|+.+|+.++|..+ .+..+|+.|.
T Consensus 3 ~~~~~~KyRP~~F~dIIGQe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~-----~~~~~Cg~C~ 77 (605)
T PRK05896 3 EITFYRKYRPHNFKQIIGQELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNP-----KDGDCCNSCS 77 (605)
T ss_pred chhHHHHhCCCCHHHhcCcHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCC-----CCCCCCcccH
Confidence 45899999999999999999999999999999999999999999999999999999999999753 2346999999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+|..+..+.|+|++++++++..++++++++++.+.+.|+++++||+||||+|+|+.+++++|+++||+||+++++|++|+
T Consensus 78 sCr~i~~~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt 157 (605)
T PRK05896 78 VCESINTNQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATT 157 (605)
T ss_pred HHHHHHcCCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECC
Confidence 99999999999999999888889999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
++++++++|+|||++++|.+++.+++..|+..+++++|+.+++++++.+++.++||+|+++++++++..|.+..||.++|
T Consensus 158 ~~~KLl~TI~SRcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~GdlR~AlnlLekL~~y~~~~It~e~V 237 (605)
T PRK05896 158 EFQKIPLTIISRCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADGSLRDGLSILDQLSTFKNSEIDIEDI 237 (605)
T ss_pred ChHhhhHHHHhhhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998877999999
Q ss_pred HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cC--CchhHHHH--
Q psy13354 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IK--DSPNYNEI-- 692 (1342)
Q Consensus 618 ~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~--~~~~~~~~-- 692 (1342)
.++++......+|++++++..++...++.++++|...|++|..++..|..+||+++..+...... .. .....+.+
T Consensus 238 ~ellg~~~~~~Vf~Ll~AI~~kd~~~al~~l~~Ll~~ge~~~~il~~L~~~~RDlL~~k~~~~~~~L~~~~~~~~~~~~~ 317 (605)
T PRK05896 238 NKTFGLVDNNKKINLIELIQKNDIEELRNLINELESKGINFEAFCRDLINLLIDLLVYQKTKNINLLKKLSKEQLKTLNL 317 (605)
T ss_pred HHHhccCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhhcCChhhhhcCCHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999888754431 11 12222222
Q ss_pred ---HHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 693 ---IQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 693 ---~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+-++-.|.. .-.+..+.++-..||.+.++...+|..+.++...
T Consensus 318 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 363 (605)
T PRK05896 318 EKQKLLSIEFNT---NFLLNNFVSLINRLKASVNQVFEFEIYLYKIINA 363 (605)
T ss_pred HHHHHhhhhccc---chHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhcc
Confidence 233333333 3345566677888999989999999999998765
No 44
>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []. The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....
Probab=100.00 E-value=4.4e-41 Score=390.19 Aligned_cols=371 Identities=58% Similarity=0.965 Sum_probs=308.8
Q ss_pred cccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC
Q psy13354 9 SKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA 88 (1342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~ 88 (1342)
...||.+.+.+.++.+|+++.|.|.++||+++|.+++++...+.++|.+|+++.++|+++...+++|..+.++++++||+
T Consensus 2 ~~~d~ei~~li~~e~~rq~~~l~LiaSEN~~Sp~v~~al~S~l~nkyaeg~pg~ryy~G~~~id~iE~la~~ra~~lF~~ 81 (399)
T PF00464_consen 2 KEFDPEIYELIEKEEERQRSTLNLIASENYMSPAVREALGSDLTNKYAEGYPGKRYYGGCEYIDEIEELAIERAKELFGA 81 (399)
T ss_dssp HHHTHHHHHHHHHHHHHHHHSEE-CTT-----HHHHHHHTSGGGGS-TTEETTEESSSSTHHHHHHHHHHHHHHHHHHT-
T ss_pred cccCHHHHHHHHHHHHHHhcCccccCcccccCHHHHHHhCCcceeeccccCCCcccccCcchhhHHHHHHHHHHHHHhCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred C----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhh-----CCceeEEEEecCC-CCCCCCHHHH
Q psy13354 89 E----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNM-----SGKWFNSICYGLN-KKEKIDYKKV 158 (1342)
Q Consensus 89 ~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~-----~g~~~~~v~~~~~-~~~~id~e~L 158 (1342)
+ ++.+.+.||+.|+.+++.++++|||+|+..+..+++|++++..... .|..++.++++++ +++.+|++++
T Consensus 82 ~~~~w~anvqp~SGs~An~av~~aLl~pGD~Im~l~l~~GGHlshg~~~~~~~~~~~~~~~~~~~y~~d~~~~~ID~d~l 161 (399)
T PF00464_consen 82 EPKEWYANVQPHSGSQANLAVYMALLKPGDTIMGLSLPHGGHLSHGSSVNFKKISASGLYFESVPYPVDPDTGLIDYDEL 161 (399)
T ss_dssp STTTEEEE---SSHHHHHHHHHHHHT-TT-EEEEEEGGGT--GGGT-TTSHSBSSHHHHHSEEEEEEB-TTTSSB-HHHH
T ss_pred CcccceEEeecCCchHHHHHHHHHHHhhcCcEEecChhhcccccccccccccccccccceEEEEeeeeecCCCeECHHHH
Confidence 9 9999999999999999999999999999999999999998876665 6677788988988 7799999999
Q ss_pred HHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeE
Q psy13354 159 EYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGF 238 (1342)
Q Consensus 159 e~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~ 238 (1342)
++.+.+.+|++|+++.++++...|++++.++|++.|++|++|.+|..|.+.++.+++|++.+|++++|.||+|.||.||+
T Consensus 162 ~~~a~~~kPklIi~G~S~y~~~~d~~~~reIad~vga~l~~D~sH~~GLIa~g~~~~P~~~ADvvt~sThKtl~GPrggi 241 (399)
T PF00464_consen 162 EKLAKEHKPKLIICGASSYPRPIDFKRFREIADEVGAYLMADISHIAGLIAGGLFPNPFPYADVVTGSTHKTLRGPRGGI 241 (399)
T ss_dssp HHHHHHH--SEEEEE-SSTSS---HHHHHHHHHHTT-EEEEE-TTTHHHHHTTSS--GCCTSSEEEEESSGGG-SSS-EE
T ss_pred HHHHhhcCCCEEEECchhccCccCHHHHHHHHHhcCcEEEecccccccceehheecCccccceEEEeeccccccccCceE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEe--------------chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 239 ILMK--------------KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 239 iv~~--------------~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
|+++ +++.+.+....+++..+++.....+|.+.++.+.....++++.+++.+|++.|.+.|.+.|+
T Consensus 242 I~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~ 321 (399)
T PF00464_consen 242 ILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHRIAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGF 321 (399)
T ss_dssp EEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-
T ss_pred EEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 9999 68999999989999999999999999999999988778899999999999999999999999
Q ss_pred EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
+++.+.+++|.+|+++...+.+...+...|++.||.+.....|+. ..++..+++|+|+.+.|++++.++++..++
T Consensus 322 ~v~~ggTd~H~vlvd~~~~~~~g~~a~~~Le~~gI~vnkn~iP~d-~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA 396 (399)
T PF00464_consen 322 KVVTGGTDNHQVLVDLRSFGIDGKEAEKALEEAGIIVNKNTIPGD-RSPFVPSGLRLGTPALTRRGMKEEDMKEIA 396 (399)
T ss_dssp EEGGGS-SSSEEEEEGGGGTS-HHHHHHHHHHTTEE-EEE--TTT-STTTT-SEEEEESHHHHHTT--HHHHHHHH
T ss_pred EEEECCCCCCeEEEEecccccchHHHHHHHHhcCeeecccccCCC-CCCCCCCEEEECCHHHHhCCCCHHHHHHHH
Confidence 999988999999999988777888899999999999999888887 344556789999999999999999987765
No 45
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=100.00 E-value=2.2e-40 Score=398.01 Aligned_cols=330 Identities=37% Similarity=0.634 Sum_probs=302.9
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
+|++||||++|++++||+++++.|.+++.+++++|+|||+||||+|||++|+++++.++|.. ..+..||+.|.+|
T Consensus 3 ~l~~kyRP~~~~divGq~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~-----~~~~~pc~~c~~c 77 (472)
T PRK14962 3 ALYRKYRPKTFSEVVGQDHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLNCEN-----RKGVEPCNECRAC 77 (472)
T ss_pred hhHHHHCCCCHHHccCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcccc-----CCCCCCCcccHHH
Confidence 68999999999999999999999999999999999999999999999999999999999864 3456899999999
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCC
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEP 539 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~ 539 (1342)
..+..+.++++.++++++..++++++++.+.+...|++++++||||||+|+|+.+.++.|++++++|++++++|++++.+
T Consensus 78 ~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~Ilattn~ 157 (472)
T PRK14962 78 RSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVFVLATTNL 157 (472)
T ss_pred HHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEEEEEeCCh
Confidence 99999999999999998888999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHH
Q psy13354 540 QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619 (1342)
Q Consensus 540 ~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~ 619 (1342)
.++.++|+|||.+++|.+++.+++..|++++++.+|+.++++++++|++.++||+|.++++|+++..++++.||.++|++
T Consensus 158 ~kl~~~L~SR~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~GdlR~aln~Le~l~~~~~~~It~e~V~~ 237 (472)
T PRK14962 158 EKVPPTIISRCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASGGLRDALTMLEQVWKFSEGKITLETVHE 237 (472)
T ss_pred HhhhHHHhcCcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999888777799999999
Q ss_pred HhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcC
Q psy13354 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKF 699 (1342)
Q Consensus 620 ~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~ 699 (1342)
+++...++.+|++++++..+|...|+.++++|+..|++|..++..|.......+ +..+
T Consensus 238 ~l~~~~~~~i~~li~si~~~d~~~Al~~l~~ll~~Gedp~~i~r~l~~~~~edi--------~~a~-------------- 295 (472)
T PRK14962 238 ALGLIPIEVVRDYINAIFNGDVKRVFTVLDDVYYSGKDYEVLIQQAIEDLVEDL--------ERER-------------- 295 (472)
T ss_pred HHcCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHc--------cCCC--------------
Confidence 999999999999999999999999999999999999999999888777654422 1111
Q ss_pred CHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 700 NIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 700 s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
..++..+...+.++-..++..-.+....|+.++++|.
T Consensus 296 -~~~~~~~~~~~~~~~~~i~~~e~~~~l~~~~~~~~~~ 332 (472)
T PRK14962 296 -ANDIIQVSRQLLNILREIKFAEEKRLVCKLGSASIAT 332 (472)
T ss_pred -chHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHHHH
Confidence 2345556777777788888887888899999988875
No 46
>PLN02271 serine hydroxymethyltransferase
Probab=100.00 E-value=6e-40 Score=386.98 Aligned_cols=374 Identities=45% Similarity=0.723 Sum_probs=343.3
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
..+...||.+.+.+.++..|+.+.|.|.++||++++.+++++...+.++|.+|+++.+||+++...+++|..+.++..++
T Consensus 127 ~~l~~~Dpei~~li~~E~~rQ~~~l~LIASEN~~S~av~~algS~ltnkYaEG~pG~Ryy~G~~~iD~iE~la~era~~l 206 (586)
T PLN02271 127 QPLPEADPDIHELMEKEKQRQFKGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYIDQIERLCCERALAA 206 (586)
T ss_pred ccHhhhCHHHHHHHHHHHHHHhcCeeeccccccCCHHHHHHhcCcccccCCCCCCCCcCCCCChhHHHHHHHHHHHHHHH
Confidence 35777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCC----ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH------HhhhCCceeEEEEecCC-CCCCCC
Q psy13354 86 FNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM------MLNMSGKWFNSICYGLN-KKEKID 154 (1342)
Q Consensus 86 ~g~~~----~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~------~~~~~g~~~~~v~~~~~-~~~~id 154 (1342)
||+++ +.+.+.||+.|+.+++.++++|||+|+..+.++++|.+++. .+...|..++.++++++ +++.+|
T Consensus 207 F~~~~~~~gaNVQp~SGs~AN~aV~~ALl~PGD~IL~ldl~~GGHlshg~~~~~g~~vs~sG~~~~~vpY~~d~~~g~ID 286 (586)
T PLN02271 207 FGLDSEKWGVNVQPYSCTSANFAVYTGLLLPGDRIMGLDSPSGGHMSHGYYTPGGKKVSGASIFFESLPYKVNPQTGYID 286 (586)
T ss_pred hCCcccccccceeeccHHHHHHHHHHHhcCCCCEEEEecCCCCCchhcccccccccccccccceEEEEEcccccccCccC
Confidence 99775 77888899999999999999999999999999999999863 34667888899988886 678999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
++++++.+...+|++|+++.+.++...|+++|+++|+++|+++++|.+|..|.+..+.+++++..+|++++|.||||.||
T Consensus 287 yd~lek~a~~~rPKLII~g~Saypr~~D~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~~sP~~~aDvvt~TTHKtLrGP 366 (586)
T PLN02271 287 YDKLEEKALDFRPKILICGGSSYPREWDYARFRQIADKCGAVLMCDMAHISGLVAAKECVNPFDYCDIVTSTTHKSLRGP 366 (586)
T ss_pred HHHHHHHhhhcCCeEEEECchhccCcCCHHHHHHHHHHcCCEEEEECcccccccccCcCCCCCcCCcEEEeCCcccCCCC
Confidence 99999977778999999999999988999999999999999999999999999999988889888999999999999999
Q ss_pred CeeEEEEech--------------------hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q psy13354 235 RGGFILMKKK--------------------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKI 294 (1342)
Q Consensus 235 ~GG~iv~~~~--------------------l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~ 294 (1342)
.||+|+.+++ +.+.+....+|...+++.+...+|++.++.+.....+++|.+++.+|++.
T Consensus 367 rGG~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~efk~Ya~QVv~NAka 446 (586)
T PLN02271 367 RGGIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYMQQVKKNAQA 446 (586)
T ss_pred CceEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHH
Confidence 9999998763 56777777788888999898999999999998877889999999999999
Q ss_pred HHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchh
Q psy13354 295 LSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSEL 374 (1342)
Q Consensus 295 l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~ 374 (1342)
|.+.|.+.|++++.+++++|.+++++...+.+...+...|++.||.+....+|+. ..++.++++|+|+.+.|++++.++
T Consensus 447 LA~~L~~~G~~vv~ggTdnHlvLvDl~~~g~~G~~ae~~Le~~~I~~Nkn~iP~d-~~~~~psGiRiGT~alT~rG~~e~ 525 (586)
T PLN02271 447 LASALLRRKCRLVTGGTDNHLLLWDLTTLGLTGKNYEKVCEMCHITLNKTAIFGD-NGTISPGGVRIGTPAMTSRGCLES 525 (586)
T ss_pred HHHHHHHCCCeEeeCCCCcceeeecCcccCCCHHHHHHHHHHcCeEeccccCCCC-CCCCCCCcccccCHHHHhcCCCcH
Confidence 9999999999999999999999999988877889999999999999999888876 456667899999999999999999
Q ss_pred hHHHHH
Q psy13354 375 EIIKVV 380 (1342)
Q Consensus 375 d~~~~~ 380 (1342)
|+..++
T Consensus 526 d~~~iA 531 (586)
T PLN02271 526 DFETIA 531 (586)
T ss_pred HHHHHH
Confidence 986654
No 47
>PRK13580 serine hydroxymethyltransferase; Provisional
Probab=100.00 E-value=5.8e-40 Score=388.11 Aligned_cols=374 Identities=47% Similarity=0.806 Sum_probs=336.5
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
+.+...||.+.+.+..+.+|+++.|.|.+++|+++|.+++++...+.++|.+|+++.+||+++...+++|..+.++..++
T Consensus 28 ~~l~~~d~~~~~~~~~e~~rq~~~l~LiasEN~~s~~v~~a~~s~l~nkyaeg~pg~ryy~g~~~~d~ie~l~~~ra~~l 107 (493)
T PRK13580 28 DVILHVEPRIAEAIRQELADQRSSLKLIASENYSSLAVQLAMGNLLTDKYAEGTPGHRFYAGCQNVDTVEWEAAEHAKEL 107 (493)
T ss_pred HHHHhhCHHHHHHHHHHHHHHhcCceEecccccCCHHHHHHhcccccccCcCCCCCccccCCCchHHHHHHHHHHHHHHH
Confidence 34667899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCceEecCCHHHHHHHHHHHccCC-------------------------------CCEEEEeeccCCccchhhHHhh
Q psy13354 86 FNAEAANVQPHSGSQANQAVFFSVLNP-------------------------------GDTIMGMSLQEGGHLTHGMMLN 134 (1342)
Q Consensus 86 ~g~~~~vi~~~sGs~A~~~al~al~~p-------------------------------GD~Vlv~~~~~~~~~s~~~~~~ 134 (1342)
||++++.+.+.||+.|+.+++.+++.| ||+|+..+..+++|++++....
T Consensus 108 f~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~GGHlthg~~~n 187 (493)
T PRK13580 108 FGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSGGHLTHGFRPN 187 (493)
T ss_pred hCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCCCeeecCcccc
Confidence 999999999999999999999999976 8999999999999999886666
Q ss_pred hCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC
Q psy13354 135 MSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY 213 (1342)
Q Consensus 135 ~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~ 213 (1342)
..+..+..++++++ +++.+|++++++.+++++|.+++.+.++++...|+++|+++|++||+++++|+||++|.++.+..
T Consensus 188 ~~~~~~~~~~y~vd~~~g~iD~d~l~~~~~~~~plvii~g~S~~~~~~dl~~i~eia~~~gA~L~VD~AH~~Gligg~~~ 267 (493)
T PRK13580 188 ISGKMFHQRSYGVDPDTGLLDYDEIAALAREFKPLILVAGYSAYPRRVNFAKLREIADEVGAVLMVDMAHFAGLVAGKVF 267 (493)
T ss_pred hhhheeeeEecccCcccCccCHHHHHHHHhhcCCEEEEeCccccCCCcCHHHHHHHHHHcCCEEEEECchhhceeccccc
Confidence 77777788888887 56889999999999999999999999999988899999999999999999999999999875543
Q ss_pred C---CCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy13354 214 P---NPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290 (1342)
Q Consensus 214 ~---~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~ 290 (1342)
. ++...+||+++|+||+|.||.||++++++++.+.+... .++.++++.+|..+|++.++.+.....++++++++.+
T Consensus 268 ~~~~~~~~~~D~vtgT~hKaL~GP~GG~I~~~~~l~~~L~~a-~P~i~gg~l~p~iAA~avAl~e~~~~ef~~y~~~l~~ 346 (493)
T PRK13580 268 TGDEDPVPHADIVTTTTHKTLRGPRGGLVLAKKEYADAVDKG-CPLVLGGPLPHVMAAKAVALAEARTPEFQKYAQQVVD 346 (493)
T ss_pred hhhcCCCCCCcEEEeCChhhccCCCeEEEEecHHHHHHHhhC-CCcccCCCccHHHHHHHHHHHHHhCccHHHHHHHHHH
Confidence 3 45567899999999999899999999999999998654 5889999999999988888888876566788999999
Q ss_pred HHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 291 ~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
|+++|++.|.+.|+++..+++.+|++++++++...+...+.+.|++.||++.+..+|.++.+++..++||+++++.++++
T Consensus 347 Na~~La~~L~~~G~~vv~ggTdshIV~V~lg~~~~~g~~a~~~L~e~GI~vn~i~~Ptvp~g~~~~srLRIg~~A~ttrg 426 (493)
T PRK13580 347 NARALAEGFLKRGARLVTGGTDNHLVLIDVTSFGLTGRQAESALLDAGIVTNRNSIPSDPNGAWYTSGIRLGTPALTTLG 426 (493)
T ss_pred HHHHHHHHHHhcCCCccCCCCCCCEEEEEeCCHHHHHHHHHHHHHHCCeEEccccCCCCCCCCCCCceEEeccchhhhcC
Confidence 99999999999999987655778999999987655556777788888999999999999987777889999999999999
Q ss_pred cchhhHHHHH
Q psy13354 371 FSELEIIKVV 380 (1342)
Q Consensus 371 ~~e~d~~~~~ 380 (1342)
++++|+..++
T Consensus 427 ~teedi~~ia 436 (493)
T PRK13580 427 MGSDEMDEVA 436 (493)
T ss_pred CCHHHHHHHH
Confidence 9998876544
No 48
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.1e-39 Score=343.47 Aligned_cols=319 Identities=29% Similarity=0.399 Sum_probs=266.3
Q ss_pred cccccccccCCCcCchhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCee
Q psy13354 745 LDYNNLKNSKDTKGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLY 824 (1342)
Q Consensus 745 ~~~~~~~~~~~~~g~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~ 824 (1342)
++|+|+.+ .+...+.++-|..|+..||.++-.+||++.+ ||-.++ -+||+.|++.+++.+++||+|+
T Consensus 51 LVCSNSlr-~~~~~navGlLk~EMR~lgSlii~~Ad~~~V----------PAGgAL--AVDR~~Fs~~vT~~l~~hpli~ 117 (439)
T COG1206 51 LVCSNSLR-SDALTNAVGLLKAEMRLLGSLIIEAADKHRV----------PAGGAL--AVDRDGFSQAVTEKLENHPLIE 117 (439)
T ss_pred heeccccc-cchhhhhhHHHHHHHHHhhhHHhhhhhhccC----------CCCcee--eecHhHHHHHHHHHHhcCCCEE
Confidence 57888876 4477789999999999999999999999988 999999 8999999999999999999999
Q ss_pred EEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHH-cCCCccccc
Q psy13354 825 LFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE-LQLSHGRLK 903 (1342)
Q Consensus 825 i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~-~g~~~~~~~ 903 (1342)
|+.++|++|-- + +.+||||| +..|+.|+..|++ .|-....|+
T Consensus 118 vireEvt~iP~-----------d------g~~vIATG--------------------PLTs~~La~~i~~ltG~d~l~Fy 160 (439)
T COG1206 118 VIREEVTEIPP-----------D------GITVIATG--------------------PLTSDALAEKIKELTGEDYLYFY 160 (439)
T ss_pred EEccccccCCC-----------C------CcEEEecC--------------------CCCCHHHHHHHHHhhCCceEEee
Confidence 99999888731 1 45799999 8899999999999 599999999
Q ss_pred cCCCcccccCccccccceeec-CCCCCCCcccccCCCCCCCCccccchhhcc--hhHHHHHHh------hcccCCCCcc-
Q psy13354 904 TGTPPRIDKRTIDFSKMEEQI-GDFDPVPVFSVLGNINLHPKQLSCFITHTN--EKTHNIIRS------EFKNSPIFSG- 973 (1342)
Q Consensus 904 ~~~~~r~~~~si~~~~~~~~~-~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~--~~~~~~i~~------~~~~~p~~~~- 973 (1342)
+...|+|+.+|||+++...+. .|+ | ..++++|.||+.. .....++.. ..+..+.|.|
T Consensus 161 DAaAPIi~~dSIdmd~~~~~sRYdK---------g----~a~YiNCPmtkEey~~F~eaL~~ae~~~~k~fEk~~~FegC 227 (439)
T COG1206 161 DAAAPIIEFDSIDMDKAYLKSRYDK---------G----EADYINCPMTKEEYLAFYEALIEAEKAPLKDFEKEKYFEGC 227 (439)
T ss_pred cccCceeeccccchHHHHhhhcccc---------c----cchhhcCCCCHHHHHHHHHHHHhcccCChhhhccccccccc
Confidence 999999999999999988865 331 1 1247999999863 233344432 2222333322
Q ss_pred ----cccccc---CCCCCCccccc--cc--CCCCCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEE
Q psy13354 974 ----KIESIG---PRYCPSIEDKV--YR--FPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANI 1042 (1342)
Q Consensus 974 ----~~~~~g---~r~~~s~~~k~--~~--~~~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i 1042 (1342)
.+..+| .||.|--.--+ -+ ...+++..++|+++......+++.||+|.|.|.+|++++++|||||||+|
T Consensus 228 mPIE~mA~rG~~Tl~~GPmKPvGL~~p~~~tgk~pYAVVQLRqdna~GtLynmVGFQT~LkwgeQkrVf~mIPgLeNAef 307 (439)
T COG1206 228 MPIEVMAERGRKTLRFGPMKPVGLEDPRDPTGKRPYAVVQLRQDNAAGTLYNMVGFQTHLKWGEQKRVFRMIPGLENAEF 307 (439)
T ss_pred CcHHHHHhhCcchhccCCCCCcCCCCCCCCCCCCceEEEEeeccccccceeeeeeeeeccchhhhhhhhhhcCCcchhhh
Confidence 122222 45666322111 12 12226899999999999999999999999999999999999999999999
Q ss_pred ecceeEEEeeeeC-ccCccccccccCcCCeeecccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhh
Q psy13354 1043 IRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVD 1121 (1342)
Q Consensus 1043 ~~~g~~v~~~~i~-p~~l~~tlesk~~~gL~~aGqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~id 1121 (1342)
+|+|+.++++||| |+-|++|++.|.-++|||||||.|+.||.|++|+|++||+|||+.++|++|++++.+.+ ||-|.+
T Consensus 308 vRyGvmHRNtfinSP~lL~~tl~lk~~p~l~fAGQitG~EGYveSaA~Gllag~naa~~~~g~~~~~~P~tT~-~Gal~~ 386 (439)
T COG1206 308 VRYGVMHRNTFINSPKLLDPTLQLKKRPNLFFAGQITGVEGYVESAASGLLAGINAARLALGEEPLIPPPTTA-LGALVN 386 (439)
T ss_pred hhccceecccccCChhhhhHHhhcccCCCcEEeeeeecchhhhHHhhhhHHHhhHHHHHhcCCCCCCCCchhH-HHHHHH
Confidence 9999999999999 88899999999999999999999999999999999999999999999999999999988 999999
Q ss_pred hhhhcC
Q psy13354 1122 DLITKG 1127 (1342)
Q Consensus 1122 dl~~~~ 1127 (1342)
=+++.|
T Consensus 387 yIt~~~ 392 (439)
T COG1206 387 YITGAG 392 (439)
T ss_pred HHhcCC
Confidence 888773
No 49
>KOG2467|consensus
Probab=100.00 E-value=1.3e-36 Score=328.91 Aligned_cols=376 Identities=51% Similarity=0.835 Sum_probs=344.3
Q ss_pred ccccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH
Q psy13354 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83 (1342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la 83 (1342)
.++.+...||.+.+.+.++..|+.+.|.|.++|||.+.+|++|+...+.|+|.+|+|+.+||++++..+++|...+++.-
T Consensus 17 ~~~~l~~~DPev~~ii~~Ek~RQ~~gieLIaSENFts~aVmeAlGS~ltNKYSEGyPG~RYYGGne~ID~iE~LCq~RAL 96 (477)
T KOG2467|consen 17 GNTPLEEVDPEVHDIIEKEKERQKRGIELIASENFTSRAVMEALGSCLTNKYSEGYPGARYYGGNEYIDQIELLCQKRAL 96 (477)
T ss_pred hcCchhhcChHHHHHHHHHHHhhhcceeEeecccchHHHHHHHHhHHhhcccccCCCcccccCcchHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCC-----ceeEEEEecCC-CCCCC
Q psy13354 84 KIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSG-----KWFNSICYGLN-KKEKI 153 (1342)
Q Consensus 84 ~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g-----~~~~~v~~~~~-~~~~i 153 (1342)
+.|+.+ .+.+.+.|||-||+++..+++.|+|.|.-.+.++++|++++..-.... +.++..|+.++ .+|-|
T Consensus 97 eaF~ldp~kWGVNVQp~SGSPANfavYtall~Ph~RiMGLDLP~GGHLsHGy~T~~kkISa~SiyFeSmPYkv~~~TG~I 176 (477)
T KOG2467|consen 97 EAFGLDPEKWGVNVQPYSGSPANFAVYTALLKPHERIMGLDLPSGGHLSHGYQTPTKKISATSIYFESMPYKVDPSTGYI 176 (477)
T ss_pred HHhCCCHHHCceeeccCCCCchhhHHHhhhcCCCCeeeeccCCCCCccccccccCCceeeeeeeecccCceeeCCCCCce
Confidence 999988 567888899999999999999999999999999999999876533332 34444555666 67899
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCC
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~g 233 (1342)
|+|.|+......+|+++|...+.|+..+|..++.++|++.|+++++|.||..|...++..++|++.+|||+.+.||++-|
T Consensus 177 DYD~Le~~A~~frPk~iiaG~SaY~R~~DYaR~R~Iad~~gA~Lm~DMAHISgLVAA~vipsPFey~DiVTTTTHKsLRG 256 (477)
T KOG2467|consen 177 DYDKLEKTATLFRPKLIIAGTSAYSRLIDYARFRKIADKVGAYLMADMAHISGLVAAGVIPSPFEYCDIVTTTTHKSLRG 256 (477)
T ss_pred ehHHHHHHHHhcCCcEEEeccccchhhccHHHHHHHHHhcCceeehhhhhHHHHHhcccCCCcccccceeeccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEEec---------------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 234 PRGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 234 p~GG~iv~~~---------------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
|.||.|+.++ ++.+.++...+|...|+|.+..+++++.|+++.....++.+.++..+|++.|.+.
T Consensus 257 PRg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq~qV~~Nakala~~ 336 (477)
T KOG2467|consen 257 PRGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQKQVLKNAKALASA 336 (477)
T ss_pred CcceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999876 2455666667889999999999999999999999889999999999999999999
Q ss_pred HHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHH
Q psy13354 299 LDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIK 378 (1342)
Q Consensus 299 L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~ 378 (1342)
|.+.|++++++++++|.+.+++.+.+.+...++..++.-+|.+....+|+... ++.++++|++..+.|+++..++|+.+
T Consensus 337 l~~~Gy~lvtgGTDnHlvLvDLr~~G~dGarvE~vle~~~I~~NKNtvpGD~S-al~PgGiRiGtPAmTsRG~~e~df~~ 415 (477)
T KOG2467|consen 337 LISRGYKLVTGGTDNHLVLVDLRPKGVDGARVEKVLELCHIALNKNTVPGDKS-ALSPGGIRIGTPAMTSRGFGEEDFEK 415 (477)
T ss_pred HHHcCceEecCCccceEEEEeccccCCchHHHHHHHHHhhhhhcCCcCCCCcc-ccCCCceeccchhhcccCccHHHHHH
Confidence 99999999999999999999999999999999999999999999888898764 55678999999999999999999877
Q ss_pred HH
Q psy13354 379 VV 380 (1342)
Q Consensus 379 ~~ 380 (1342)
++
T Consensus 416 v~ 417 (477)
T KOG2467|consen 416 VA 417 (477)
T ss_pred HH
Confidence 65
No 50
>PLN03226 serine hydroxymethyltransferase; Provisional
Probab=100.00 E-value=7.3e-35 Score=353.28 Aligned_cols=374 Identities=49% Similarity=0.787 Sum_probs=315.3
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
..+...||.+.+.+.++..|+++.|.|.++||++++.+++++...+.++|..|++++++|+++..++++|+.+.++..+.
T Consensus 13 ~~~~~~d~~~~~~i~~e~~~q~~~l~liasen~~s~~v~~a~~s~~~~ky~~G~~g~r~~~G~~~~d~lE~~~~~~~~~~ 92 (475)
T PLN03226 13 APLEEVDPEIADIIEKEKRRQWKGLELIASENFTSRAVMEALGSCLTNKYSEGLPGARYYGGNEYIDQIETLCQKRALEA 92 (475)
T ss_pred hhhhhcCHHHHHHHHHHHHHHHcCeeEecCCccCCHHHHHHHhhHHhccccCCCCCCcCcCCChhHHHHHHHHHHHHHHH
Confidence 45777899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCc----eEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHh-----hhCCceeEEEEecCC-CCCCCCH
Q psy13354 86 FNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMML-----NMSGKWFNSICYGLN-KKEKIDY 155 (1342)
Q Consensus 86 ~g~~~~----vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~-----~~~g~~~~~v~~~~~-~~~~id~ 155 (1342)
|+.++. .+.+.||+.||..++.++++|||+|+..+...++|++++... ...+..+..+++.++ +++.+|+
T Consensus 93 f~~~~~~~~~nv~~~SG~~AN~av~~aL~~pgD~Il~~d~~~gGhl~H~~~~~g~~~s~~~~~~~~~~y~~~~~~g~iD~ 172 (475)
T PLN03226 93 FRLDPEKWGVNVQPLSGSPANFAVYTALLQPHDRIMGLDLPHGGHLSHGYQTDGKKISATSIYFESMPYRLDESTGLIDY 172 (475)
T ss_pred hCCCcceeEEecCcCchHHHHHHHHHHhCCCCCEEEECCCCcCcchhhhhhhcccccccceEEEEeeeeeecCCCCCcCH
Confidence 998853 334569999999999999999999999888888888876432 222333445556655 6788999
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCC
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~ 235 (1342)
+++++++...+|++|+++.++++...|+++|.++|+++|+++++|+||.+|.++.+...++++.+|++++|+||||.||.
T Consensus 173 d~Le~~l~~~~pklIv~~~S~~s~~~D~a~i~~ia~~~ga~LlvD~AH~~Gli~~~~~~~p~~~~Div~~t~hK~L~GP~ 252 (475)
T PLN03226 173 DKLEKKAMLFRPKLIIAGASAYPRDWDYARMRKIADKVGALLMCDMAHISGLVAAQEAASPFEYCDVVTTTTHKSLRGPR 252 (475)
T ss_pred HHHHHHHhhcCCeEEEEecCcCCCccCHHHHHHHHHHcCCEEEEEchhhhCcccCCCCCCCCCCCeEEEecCcccccCCC
Confidence 99999998778888888788888888999999999999999999999999998877766777789999999999999999
Q ss_pred eeEEEEechhH-----------H---HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Q psy13354 236 GGFILMKKKYK-----------K---IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ 301 (1342)
Q Consensus 236 GG~iv~~~~l~-----------~---~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~ 301 (1342)
||++++++++. + .++....+...++++.+..+++++++......+++.+.+++.++++++.+.|.+
T Consensus 253 Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~ 332 (475)
T PLN03226 253 GGMIFFRKGPKPPKGQGEGAVYDYEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMS 332 (475)
T ss_pred ceEEEEchhhcccccCCCccHHHHHHHhccccCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHh
Confidence 99999987533 2 233333344456666777777788888777667888999999999999999999
Q ss_pred CCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 302 RGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 302 ~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
.|++++.++++++++++++...+.+...+...|++.||.+.....|+. ..++.++++|++++..+++++.++|+.+++
T Consensus 333 ~G~~l~~~~t~~hi~lv~~~~~gi~~~~~~~~L~~~~I~~nk~~~p~~-~~~~~~~giRiGt~~lt~~g~~~~d~~~ia 410 (475)
T PLN03226 333 KGYKLVTGGTDNHLVLWDLRPLGLTGSRVEKVLDLAHITLNKNAVPGD-SSALVPGGVRIGTPAMTSRGLVEKDFEKVA 410 (475)
T ss_pred CCCEEEcCCCCCCEEEEEccCCCCCHHHHHHHHHHCCCEECCCCCCCC-cccCCCCCcccCcHHHHHCCCCHHHHHHHH
Confidence 999998766678999999876666777888888899999998888865 345567789999999999999999886644
No 51
>KOG0989|consensus
Probab=100.00 E-value=4.7e-35 Score=314.49 Aligned_cols=276 Identities=28% Similarity=0.409 Sum_probs=235.4
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|..||+|++|++++||+++++.|.+++..+.+| +||||||||||||++|++++++|+|++ ..||..|..
T Consensus 24 ~swteKYrPkt~de~~gQe~vV~~L~~a~~~~~lp-~~LFyGPpGTGKTStalafar~L~~~~--------~~~~rvl~l 94 (346)
T KOG0989|consen 24 RSWTEKYRPKTFDELAGQEHVVQVLKNALLRRILP-HYLFYGPPGTGKTSTALAFARALNCEQ--------LFPCRVLEL 94 (346)
T ss_pred cchHHHhCCCcHHhhcchHHHHHHHHHHHhhcCCc-eEEeeCCCCCcHhHHHHHHHHHhcCcc--------ccccchhhh
Confidence 34999999999999999999999999999995555 599999999999999999999999843 358999999
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHH--hhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQT--IYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~--~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
|.+.+.|.... ... +..+..+.... ........+||+|+||+|.|+.+++++|.+++|+++.+++|||+|
T Consensus 95 naSderGisvv-----r~K---ik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIc 166 (346)
T KOG0989|consen 95 NASDERGISVV-----REK---IKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILIC 166 (346)
T ss_pred cccccccccch-----hhh---hcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEc
Confidence 98877775421 111 11222222111 112233456999999999999999999999999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHH
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNS 616 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~ 616 (1342)
|..++++.+|.|||+.+.|++++++++.+.|+.++.++|+.++++++++|+..++||+|+|+..|+++.. .+++||...
T Consensus 167 nylsrii~pi~SRC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR~Ait~Lqsls~-~gk~It~~~ 245 (346)
T KOG0989|consen 167 NYLSRIIRPLVSRCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLRRAITTLQSLSL-LGKRITTSL 245 (346)
T ss_pred CChhhCChHHHhhHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHHHHHHHHHHhhc-cCcccchHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877 567788554
Q ss_pred H-HHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy13354 617 M-QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQI 672 (1342)
Q Consensus 617 V-~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l 672 (1342)
+ +++.+.+..+.+.++++...++|..+....++++...|.+|..++..|+..+...
T Consensus 246 ~~e~~~GvVp~~~l~~lle~a~S~d~~~~v~~~Rei~~sg~~~~~lmsQLa~vi~~~ 302 (346)
T KOG0989|consen 246 VNEELAGVVPDEKLLDLLELALSADTPNTVKRVREIMRSGYSPLQLMSQLAEVIMDI 302 (346)
T ss_pred HHHHHhccCCHHHHHHHHHHHHccChHHHHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 4 4555599999999999999999999999999999999999999888777766443
No 52
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=1.9e-33 Score=338.95 Aligned_cols=380 Identities=59% Similarity=0.981 Sum_probs=305.4
Q ss_pred CccccccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHH
Q psy13354 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAIN 80 (1342)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~ 80 (1342)
|+..++.|+..||.+.+.+.++..++.+.|++++++||++|.+++++...+.++|+.|+++++++++++.+.++|+.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~sen~~~p~v~~a~~~~~~~~~~~g~~gsr~~~G~~~~~~lE~~~~~ 81 (416)
T PRK13034 2 MFFFSDSLEEYDDEVFAAINKELERQQDHLELIASENFTSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEFVDEVEALAIE 81 (416)
T ss_pred cchhhhhHhhhCHHHHHHHHHHHHHHhcCeeecccccCCCHHHHHHhcchhhcCCCCCCCCCcccCCChHHHHHHHHHHH
Confidence 55667788999999999999999999999999999999999999999999878999999999999889999999998889
Q ss_pred HHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHH
Q psy13354 81 RLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVE 159 (1342)
Q Consensus 81 ~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le 159 (1342)
.+++++|.+++.++++||+.|+..++.++++|||+|++....++++...+..+...+..++.+.++++ .++.+|+++++
T Consensus 82 ~la~l~g~~~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le 161 (416)
T PRK13034 82 RAKQLFGCDYANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGGHLTHGAKVSLSGKWYNAVQYGVDRLTGLIDYDEVE 161 (416)
T ss_pred HHHHHhCCCceEEecCCcHHHHHHHHHHhcCCCCEEEEcCccceeeeecCCcceeccceeeeEEcccccccCCcCHHHHH
Confidence 99999999998777669999999999999999999998877776643332222222333333445554 35668999999
Q ss_pred HHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEE
Q psy13354 160 YLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFI 239 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~i 239 (1342)
+.+...++++|++..+.++...|+++|.++|++||++|++|++|++|.++.+....++..+|++++|+||+++|+.||++
T Consensus 162 ~~l~~~~~klVi~~~~~~g~~~dl~~l~~la~~~g~~livD~Aha~G~~~~g~~~~~~~~~Di~~~s~~K~l~g~~GG~v 241 (416)
T PRK13034 162 ELAKEHKPKLIIAGFSAYPRELDFARFREIADEVGALLMVDMAHIAGLVAAGEHPNPFPHAHVVTTTTHKTLRGPRGGMI 241 (416)
T ss_pred HHHhhcCCeEEEECCCccccccCHHHHHHHHHHcCCEEEEeCcccccCcccCCCCCCCCCceEEEEeCcccCCCCCCeEE
Confidence 98876667888886677887789999999999999999999999999988777666666689999999999988999998
Q ss_pred EEechh-HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEE
Q psy13354 240 LMKKKY-KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILV 318 (1342)
Q Consensus 240 v~~~~l-~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i 318 (1342)
+++++. .+.++...++...+++..+..++++.++.+.......++++++.++++++++.|.+.|+++..+.+.++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~l~~~a~~l~~~L~~~G~~~~~~~~~t~i~~v 321 (416)
T PRK13034 242 LTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQPEFKTYAKQVIANAQALAEVLKERGYDLVSGGTDNHLLLV 321 (416)
T ss_pred EECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHcCCEeccCCCCCcEEEE
Confidence 887654 4445544444434455566677777777777643455678999999999999999999988543357899999
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
.+.....+...+.+.|++.||++.+...|.....+..+.++|+|+++.++++++++|+..++
T Consensus 322 ~~~~~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~p~~~~~lR~~~~~~t~~~~~~~di~~l~ 383 (416)
T PRK13034 322 DLRPKGLSGKDAEQALERAGITVNKNTVPGDTESPFVTSGIRIGTPAGTTRGFGEAEFREIA 383 (416)
T ss_pred EcCCCCCCHHHHHHHHHhCCcEEeccCCCCCCcCCCCCCeeEeCcHHHHhCCCCHHHHHHHH
Confidence 98877667777777777789999986666543333345679999999999999998886644
No 53
>PLN03025 replication factor C subunit; Provisional
Probab=100.00 E-value=1.4e-33 Score=328.77 Aligned_cols=309 Identities=17% Similarity=0.204 Sum_probs=269.5
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
++|++||||++|++++||+++++.|...+..++.+| +||+||||+|||++|+++++++.|...
T Consensus 1 ~~w~~kyrP~~l~~~~g~~~~~~~L~~~~~~~~~~~-lll~Gp~G~GKTtla~~la~~l~~~~~---------------- 63 (319)
T PLN03025 1 LPWVEKYRPTKLDDIVGNEDAVSRLQVIARDGNMPN-LILSGPPGTGKTTSILALAHELLGPNY---------------- 63 (319)
T ss_pred CChhhhcCCCCHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHhcccC----------------
Confidence 369999999999999999999999999999999887 799999999999999999999975320
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCc---cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPI---NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~---~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
...+.++++++..+++.+++.+......+. .+.+++|+|||+|.|+..++++|++++|.++.++.||++
T Consensus 64 --------~~~~~eln~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~ 135 (319)
T PLN03025 64 --------KEAVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALA 135 (319)
T ss_pred --------ccceeeecccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEE
Confidence 124778888877888888888876544322 256899999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
+|..+++.++|+|||..++|++++.+++..||.++++++|+.+++++++++++.++||+|.++++|+.+. .+.+.||.+
T Consensus 136 ~n~~~~i~~~L~SRc~~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~gDlR~aln~Lq~~~-~~~~~i~~~ 214 (319)
T PLN03025 136 CNTSSKIIEPIQSRCAIVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADGDMRQALNNLQATH-SGFGFVNQE 214 (319)
T ss_pred eCCccccchhHHHhhhcccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-hcCCCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999998433 234579999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQL 695 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~ 695 (1342)
+|.++++......+|++++++..++...|+..+.+|+..|++|..|+..|.+.++.. .
T Consensus 215 ~v~~~~~~~~~~~i~~~i~~~~~~~~~~a~~~l~~ll~~g~~~~~Il~~l~~~~~~~---~------------------- 272 (319)
T PLN03025 215 NVFKVCDQPHPLHVKNIVRNCLKGKFDDACDGLKQLYDLGYSPTDIITTLFRVVKNY---D------------------- 272 (319)
T ss_pred HHHHHcCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc---C-------------------
Confidence 999999999999999999999999999999999999999999999999995544211 0
Q ss_pred HhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 696 SKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 696 a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
++...-..++..+++.|..+..|.++..-++-++.+++..
T Consensus 273 ---~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~a~~~~~~~~ 312 (319)
T PLN03025 273 ---MPEFLKLEYLREIGFAHMRICDGVGSLLQLSGLLAKLCLV 312 (319)
T ss_pred ---CCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence 1111123688899999999998888999999999988764
No 54
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=100.00 E-value=3.4e-33 Score=327.52 Aligned_cols=310 Identities=24% Similarity=0.342 Sum_probs=271.2
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||||.+|++++||+.+++.+..+++.+..++ ++|+||+|+|||++++.+++.+.+...
T Consensus 4 ~~~w~~kyrP~~~~~~~g~~~~~~~l~~~i~~~~~~~-~ll~G~~G~GKt~~~~~l~~~l~~~~~--------------- 67 (319)
T PRK00440 4 EEIWVEKYRPRTLDEIVGQEEIVERLKSYVKEKNMPH-LLFAGPPGTGKTTAALALARELYGEDW--------------- 67 (319)
T ss_pred cCccchhhCCCcHHHhcCcHHHHHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCcc---------------
Confidence 3579999999999999999999999999999988876 699999999999999999999975321
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHH-HHHhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLL-EQTIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii-~~~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
...+++++.+...+.+.+++.+ +.+...|++ +++++|+|||++.++.+..+.|+++++.+++++.+|++
T Consensus 68 ---------~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~ 138 (319)
T PRK00440 68 ---------RENFLELNASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILS 138 (319)
T ss_pred ---------ccceEEeccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEE
Confidence 1245666655545555554444 444556776 67899999999999998899999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++.+.++.+++++||.+++|.+++.+++..|+..+++++|+.+++++++++++.++||+|.++++++++..+ ++.||.+
T Consensus 139 ~~~~~~l~~~l~sr~~~~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~gd~r~~~~~l~~~~~~-~~~it~~ 217 (319)
T PRK00440 139 CNYSSKIIDPIQSRCAVFRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEGDMRKAINALQAAAAT-GKEVTEE 217 (319)
T ss_pred eCCccccchhHHHHhheeeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998776 4679999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQ 694 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~ 694 (1342)
+|.++++...++++|++++++..++..+|+.++++|+. .|.++..|+..+...+
T Consensus 218 ~v~~~~~~~~~~~i~~l~~~~~~~~~~~a~~~l~~ll~~~g~~~~~i~~~l~~~~------------------------- 272 (319)
T PRK00440 218 AVYKITGTARPEEIREMIELALNGDFTEAREKLRDLMIDYGLSGEDIIKQIHREV------------------------- 272 (319)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-------------------------
Confidence 99999999999999999999999999999999999984 7888887766654210
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
.+++|+.+.+.++++.+.++|+.+|++.|+++.||.|++++|.+
T Consensus 273 ~~~~~~~~~l~~~~~~~~~~d~~~k~g~~~~~~le~~i~~~~~~ 316 (319)
T PRK00440 273 WSLDIPEELKVELIDAIGEADFRITEGANERIQLEALLAKLALL 316 (319)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHh
Confidence 03689999999999999999999998899999999999999865
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=3.1e-33 Score=325.11 Aligned_cols=308 Identities=22% Similarity=0.350 Sum_probs=272.6
Q ss_pred CCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCC
Q psy13354 388 SNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 467 (1342)
.+|++++||+++++.|.++++.|+++|+|||+||+|+|||++|+.+++.+.|.. ..+.|
T Consensus 1 m~~~~i~g~~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~---------------------~~~~h 59 (313)
T PRK05564 1 MSFHTIIGHENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKS---------------------QQREY 59 (313)
T ss_pred CChhhccCcHHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCC---------------------CCCCC
Confidence 369999999999999999999999999999999999999999999999998742 12457
Q ss_pred ccEEEEcc--CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHH
Q psy13354 468 MDYIEMDA--ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPIT 545 (1342)
Q Consensus 468 ~d~~~i~~--~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~ 545 (1342)
+|+..+.. ....++++++++++.+...|+++++||+|||++|.++.++.|+|+++||+||++++||++|+++++++++
T Consensus 60 ~D~~~~~~~~~~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 60 VDIIEFKPINKKSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred CCeEEeccccCCCCCHHHHHHHHHHHhcCcccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 88877765 2345678999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCc
Q psy13354 546 VLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIID 625 (1342)
Q Consensus 546 L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~ 625 (1342)
|+|||+.++|.+++++++..|+.+.+. .+++++++.++..++|++..+..++.... ....
T Consensus 140 I~SRc~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a~~~~~~~~----------------~~~~ 199 (313)
T PRK05564 140 IKSRCQIYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKVEKFIEDDS----------------LKNI 199 (313)
T ss_pred HHhhceeeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHHHHHhcccH----------------HHHH
Confidence 999999999999999999999976543 47788899999999999998876642211 0112
Q ss_pred HHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC-cccccCCchhHHHHHHHHhcCCHHHH
Q psy13354 626 QKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQIS-PEILIKDSPNYNEIIQLSKKFNIEQI 704 (1342)
Q Consensus 626 ~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~-~~~~~~~~~~~~~~~~~a~~~s~~~L 704 (1342)
++.+|++++++..++...++.+++.+...++++..++.+|.++||+++.+|.. ......+++..+.+.+++++||.+.|
T Consensus 200 ~~~~~~~~~~l~~~~~~~~l~~~~~l~~~~~~~~~~l~~l~~~~rdll~~k~~~~~~~~~~~~~~~~i~~~a~~~s~~~L 279 (313)
T PRK05564 200 RNMSLEILKDIKKSNINILLKYENFLIKYKENWEEILTCILSYIRDSLLYKETGNEELIINIDKIEDIKHISEKFSYKKL 279 (313)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHHhccCchhhhcChhHHHHHHHHHhhCCHHHH
Confidence 45789999999999999999999999999999999999999999999999974 33355677788889999999999999
Q ss_pred HHHHHHHHHHHHhhccCCChhHHHHHHHHHhH
Q psy13354 705 QLFYQISIHGRNELELAPDEYAGFTMTLLRML 736 (1342)
Q Consensus 705 ~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~ 736 (1342)
.++++.+.++++.+|++.|+.+.+|.+++++.
T Consensus 280 ~~~~~~l~~~~~~l~~n~n~~l~le~lll~~~ 311 (313)
T PRK05564 280 NKMIEIINDTRDNLSSNVNPTLVFDSMLIKMQ 311 (313)
T ss_pred HHHHHHHHHHHHHHHHcCCccHHHHHHHHhhh
Confidence 99999999999999999999999999999874
No 56
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.7e-32 Score=320.96 Aligned_cols=338 Identities=22% Similarity=0.337 Sum_probs=278.4
Q ss_pred CccccccchhhHHHHHHHHHcCC---------CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 389 NFNTLIGQNHISKSLINALDKKR---------LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~---------~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|++++||+++++.|.+++..++ ++|+|||+||+|+|||++|+.+|+.++|.... ..+|+.|++|
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~------~~~Cg~C~~C 76 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD------EPGCGECRAC 76 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC------CCCCCCCHHH
Confidence 68999999999999999999887 89999999999999999999999999996432 3689999999
Q ss_pred hhhccCCCccEEEEccC-CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 460 VKIDNGCFMDYIEMDAA-STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~-~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
..+..+.|||+..+... ...++++++++++.+...|..+++||+||||+|.|+....|+|+++||+||++++||++|++
T Consensus 77 ~~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~ 156 (394)
T PRK07940 77 RTVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPS 156 (394)
T ss_pred HHHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECC
Confidence 99999999999887654 44678999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH---------HHhhc-
Q psy13354 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ---------AINYS- 608 (1342)
Q Consensus 539 ~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k---------l~~~~- 608 (1342)
++.+.++|+|||+.+.|++|+.+++.+||.+ +.+ ++++++..++..++|+++.++..++. ++...
T Consensus 157 ~~~llpTIrSRc~~i~f~~~~~~~i~~~L~~---~~~--~~~~~a~~la~~s~G~~~~A~~l~~~~~~~~~r~~~~~~l~ 231 (394)
T PRK07940 157 PEDVLPTIRSRCRHVALRTPSVEAVAEVLVR---RDG--VDPETARRAARASQGHIGRARRLATDEEARARRAEVLNLAL 231 (394)
T ss_pred hHHChHHHHhhCeEEECCCCCHHHHHHHHHH---hcC--CCHHHHHHHHHHcCCCHHHHHHHhcChHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999873 224 67888999999999999988766432 11110
Q ss_pred --CCC------------CCHHHHHHHhccCcHHHHHHHHHHHHccCh-----------HHHHHHHHHHHH------cCCC
Q psy13354 609 --SEK------------ITLNSMQEMLSIIDQKYLIQILDALAEQDG-----------NLILSIANKIEI------YNLS 657 (1342)
Q Consensus 609 --~~~------------It~e~V~~~v~~~~~~~if~l~dal~~~~~-----------~~al~~l~~L~~------~~~~ 657 (1342)
... ...+.+...++...+....++.+.+..++. ..+++.+.+... ..+.
T Consensus 232 ~l~~~~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 311 (394)
T PRK07940 232 RLARVSDAVAAAEELVKAAEAEAKALTAERDEAETEELRTALGAGGTGKGPAKALRGAAGALKDLEKRQKRRATRASRDA 311 (394)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHhhhccccHHHHHHHHHHhccccccccccccchhHHHHHHHHHHHHhhhchhhhhhh
Confidence 000 011234455566666677777777644322 223333333222 1244
Q ss_pred HHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 658 YSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 658 ~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
...++..|..++|+++.++...+....+.+....+.+.+.+++...|..+++.+.++...++.+.++++.+|.+++++..
T Consensus 312 l~~~l~~l~~~~rDll~~~~g~~~~~~n~d~~~~l~~~a~~~~~~~l~~~~~~~~~a~~~l~~n~n~~L~lE~lll~l~~ 391 (394)
T PRK07940 312 LDRALVDLAGLYRDVLVVQLGAEVGLINPDMADRLAELAARSTPEGLLRRIDAVLACRERLAGNVKPLLAVEAMVAALRQ 391 (394)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 56789999999999999998766556677777788999999999999999999999999999999999999999999864
No 57
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=100.00 E-value=7.4e-32 Score=329.23 Aligned_cols=375 Identities=51% Similarity=0.817 Sum_probs=303.6
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
++.++..||.+.+.+..+..++++.|+|.+++|++||.+++++...+.+.|..|+++++++.+....+.+++.+++.+++
T Consensus 12 ~~~~~~~d~~~~~~~~~~~~~~~~~l~l~~sen~~s~~v~~~~~~~l~~~y~~g~p~s~~~~g~~~~~~iE~~ar~~~a~ 91 (452)
T PTZ00094 12 NQSLKEADPELYELIEKEKERQIEGLELIASENFTSRAVLECLGSCFTNKYAEGLPGNRYYGGNEVVDKIENLCQKRALE 91 (452)
T ss_pred hhhHhhhCHHHHHHHHHHHHHHHcCeeEecccccCCHHHHHHhcchhhccccCCCCCccccccchHHHHHHHHHHHHHHH
Confidence 45588889999999999988889999999999999999999999999999999999999999999999999889999999
Q ss_pred HhCCCC-ceEec---CCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-----hCCceeEEEEecCCCCCCCCH
Q psy13354 85 IFNAEA-ANVQP---HSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-----MSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 85 ~~g~~~-~vi~~---~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-----~~g~~~~~v~~~~~~~~~id~ 155 (1342)
++|++. .+.++ .||++|+..++.+++++||+|++...+++++.+.+.... ..+..+..++++++.+|.+|+
T Consensus 92 lf~a~~~~~~~~~~~~sgt~an~~v~~al~~~gd~Ii~~~~ehg~~l~~~~~l~~~~~~~~~~~~~~~~~~~~~~g~id~ 171 (452)
T PTZ00094 92 AFGLDPEEWGVNVQPYSGSPANFAVYTALLQPHDRIMGLDLPSGGHLTHGFYTAKKKVSATSIYFESLPYQVNEKGLIDY 171 (452)
T ss_pred HhCCCcccceeecCCCchHHHHHHHHHHhcCCCCEEEecccccCCcccccccccccccccceeeeeeeecccCCCCCcCH
Confidence 999873 22222 589999999999999999999999999999887653321 223445666667776799999
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCC
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~ 235 (1342)
+++++.+++.++++++++.++++...|+++|.++|+++|+++++|++|++|.+..+....++..+|++++|+||||+||.
T Consensus 172 ~~L~~~l~~~~~~lvi~~~s~~g~~~di~~I~~i~~~~ga~l~vDaaq~~G~i~~~~~~~~~~~~D~l~~S~hK~l~GP~ 251 (452)
T PTZ00094 172 DKLEELAKAFRPKLIIAGASAYPRDIDYKRFREICDSVGAYLMADIAHTSGLVAAGVLPSPFPYADVVTTTTHKSLRGPR 251 (452)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCccCHHHHHHHHHHcCCEEEEeccchhccccCCCCCCCCCCCcEEEcCCccCCCCCC
Confidence 99999998767888777677787888999999999999999999999999998766555555578999999999999999
Q ss_pred eeEEEEechhHHH----HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC
Q psy13354 236 GGFILMKKKYKKI----INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT 311 (1342)
Q Consensus 236 GG~iv~~~~l~~~----l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~ 311 (1342)
||++++++++.+. +.....+...|+++....++++.++........+++.+++.++++++.+.|.+.|+++..+..
T Consensus 252 Gg~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~~~~~~~~~i~~l~~~l~~~L~~~g~~v~~~~~ 331 (452)
T PTZ00094 252 SGLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSPEWKEYAKQVLKNAKALAAALEKRGYDLVTGGT 331 (452)
T ss_pred ceEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhCCcEEecCCC
Confidence 9999988755433 222334444566767777777777777655577788999999999999999888998865433
Q ss_pred CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 312 KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 312 ~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
..+.+++.+...+.+.+.+..+|+++||.+.....|..+ .+..++++|+|++..++++++++|+..++
T Consensus 332 ~~~~~~v~~~~~~~~~~~~~~~L~~~gI~vs~~~~p~~~-~~~~~~~vRis~~~~tt~g~~~~di~~l~ 399 (452)
T PTZ00094 332 DNHLVLVDLRPFGITGSKMEKLLDAVNISVNKNTIPGDK-SALNPSGVRLGTPALTTRGAKEKDFKFVA 399 (452)
T ss_pred CCceEeecCCcCCCCHHHHHHHHHHCCcEEecccCCCCC-cCCCCCeEEECCHHHHhCCCCHHHHHHHH
Confidence 456777777766666777888888889999865555542 22335789999999999999998876543
No 58
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=7.8e-32 Score=313.62 Aligned_cols=320 Identities=25% Similarity=0.378 Sum_probs=267.3
Q ss_pred Ccccccc-chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCC
Q psy13354 389 NFNTLIG-QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467 (1342)
Q Consensus 389 ~f~~lvG-q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 467 (1342)
.|+.++| |+++++.|.+.+..|+++|+|||+||+|+||+++|+.+++.+.|..+. ...+|+.|++|..+..+.|
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~-----~~~~cg~C~~c~~~~~~~h 77 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERN-----GVEPCGTCTNCKRIDSGNH 77 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCC-----CCCCCCcCHHHHHHhcCCC
Confidence 5788999 999999999999999999999999999999999999999999997532 2358999999999999999
Q ss_pred ccEEEEccC-CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHH
Q psy13354 468 MDYIEMDAA-STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITV 546 (1342)
Q Consensus 468 ~d~~~i~~~-~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L 546 (1342)
+|+..+... ...++++++++++.+...|+++++||+||||+|.++.+++|+|+++||+||++++||++|+++.+++++|
T Consensus 78 pD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~ll~TI 157 (329)
T PRK08058 78 PDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQILPTI 157 (329)
T ss_pred CCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhCcHHH
Confidence 999887654 3356789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcH
Q psy13354 547 LSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 547 ~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~ 626 (1342)
+|||++++|.+++.+++.+|+. ++| ++++...+++..+ |+++.+...++.-.. .. ..
T Consensus 158 rSRc~~i~~~~~~~~~~~~~L~----~~g--i~~~~~~~l~~~~-g~~~~A~~l~~~~~~--------~~--------~~ 214 (329)
T PRK08058 158 LSRCQVVEFRPLPPESLIQRLQ----EEG--ISESLATLLAGLT-NSVEEALALSEDDWF--------AQ--------AR 214 (329)
T ss_pred HhhceeeeCCCCCHHHHHHHHH----HcC--CChHHHHHHHHHc-CCHHHHHHHhcCchH--------HH--------HH
Confidence 9999999999999999988885 345 5677777777664 789988877643110 00 12
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHH
Q psy13354 627 KYLIQILDALAEQDGNLILSIANKIEIY---NLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQ 703 (1342)
Q Consensus 627 ~~if~l~dal~~~~~~~al~~l~~L~~~---~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~ 703 (1342)
..+..+.+.+..++....+.+...+... .+....++..+...+|+++.++........+.+....+.+.++++|.++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~d~~~~l~~~a~~~s~~~ 294 (329)
T PRK08058 215 ALVIKLYEALHEKDLQSFVFVQEKWMPLFKEKDQQQLGLDLLLLIYRDLLYLQLGEEDRLVFREQKEMLQQLALSYSQQQ 294 (329)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHhCCHHH
Confidence 2345666666666665555554444432 2223456888999999999988865555566777778899999999999
Q ss_pred HHHHHHHHHHHHHhhccCCChhHHHHHHHHHhH
Q psy13354 704 IQLFYQISIHGRNELELAPDEYAGFTMTLLRML 736 (1342)
Q Consensus 704 L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~ 736 (1342)
|..+++.+.++.+.+++..++.+.+|.+++++.
T Consensus 295 l~~~~~~~~~~~~~l~~n~n~~L~le~lll~~~ 327 (329)
T PRK08058 295 IVAALELILEAKRRLNSNVNFQLVMEQLVLRLQ 327 (329)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 999999999999999999999999999999874
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=100.00 E-value=1.6e-31 Score=315.96 Aligned_cols=326 Identities=23% Similarity=0.321 Sum_probs=264.8
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC-CCc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG-KCS 457 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~-~~~ 457 (1342)
..|..||+|++|++++||+.+++.|.+++..+..+| ++|+||+|+|||++|+++++.+.+..... .....+|. .|.
T Consensus 3 ~~w~~ky~P~~~~~~~g~~~~~~~L~~~~~~~~~~~-lll~Gp~GtGKT~la~~~~~~l~~~~~~~--~~~~i~~~~~~~ 79 (337)
T PRK12402 3 PLWTEKYRPALLEDILGQDEVVERLSRAVDSPNLPH-LLVQGPPGSGKTAAVRALARELYGDPWEN--NFTEFNVADFFD 79 (337)
T ss_pred CchHHhhCCCcHHHhcCCHHHHHHHHHHHhCCCCce-EEEECCCCCCHHHHHHHHHHHhcCccccc--ceEEechhhhhh
Confidence 369999999999999999999999999999988776 79999999999999999999998643111 11111111 111
Q ss_pred chhhhccCCCccEEEE---c-cCCCcCHHHHHHHHHH-HhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEE
Q psy13354 458 VCVKIDNGCFMDYIEM---D-AASTRGINEMAQLLEQ-TIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKF 532 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i---~-~~~~~~~~~i~~ii~~-~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vl 532 (1342)
.+.... ..++++..+ + .......+.+++++.. ....|+++++++|||||++.++.+.++.|.++++++++.+.+
T Consensus 80 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~ 158 (337)
T PRK12402 80 QGKKYL-VEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRF 158 (337)
T ss_pred cchhhh-hcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeE
Confidence 110000 011222111 0 0112234566666644 455688888999999999999998899999999998888999
Q ss_pred EEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCC
Q psy13354 533 ILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKI 612 (1342)
Q Consensus 533 Il~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~I 612 (1342)
|++++.+.++.++|++||..++|.+++.+++..|+.++++++|+.+++++++.|++.++||+|.+++.++++. ...+.|
T Consensus 159 Il~~~~~~~~~~~L~sr~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~gdlr~l~~~l~~~~-~~~~~I 237 (337)
T PRK12402 159 IIATRQPSKLIPPIRSRCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGGDLRKAILTLQTAA-LAAGEI 237 (337)
T ss_pred EEEeCChhhCchhhcCCceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHH-HcCCCC
Confidence 9999988899999999999999999999999999999999999999999999999999999999999999866 334579
Q ss_pred CHHHHHHHhcc-CcHHHHHHHHHHHHccChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHH
Q psy13354 613 TLNSMQEMLSI-IDQKYLIQILDALAEQDGNLILSIANKIE-IYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYN 690 (1342)
Q Consensus 613 t~e~V~~~v~~-~~~~~if~l~dal~~~~~~~al~~l~~L~-~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~ 690 (1342)
|.++|++++.. ..+.++|++++++..++..+|+.++++|+ ..|.++..|+..|...
T Consensus 238 t~~~v~~~~~~~~~~~~i~~l~~ai~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~---------------------- 295 (337)
T PRK12402 238 TMEAAYEALGDVGTDEVIESLLDAAEAGDFTDARKTLDDLLIDEGLSGGEVLEELLRV---------------------- 295 (337)
T ss_pred CHHHHHHHhCCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHH----------------------
Confidence 99999999997 55889999999999999999999999987 6888888777777430
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHh
Q psy13354 691 EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRM 735 (1342)
Q Consensus 691 ~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l 735 (1342)
.+++ ||.+.+.+++..|.++|+.+|++.++++.+|.++.++
T Consensus 296 ---~~~~-~~~~~l~~~~~~l~~~d~~lk~g~~~~~~le~~i~~~ 336 (337)
T PRK12402 296 ---ARSR-YRGDNLARLHRLAADADARLTDGANDRIQLEALLAEL 336 (337)
T ss_pred ---HHHH-CCHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHhh
Confidence 1223 9999999999999999999998899999999999875
No 60
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=100.00 E-value=3.4e-31 Score=320.85 Aligned_cols=369 Identities=62% Similarity=1.003 Sum_probs=294.8
Q ss_pred cchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC
Q psy13354 11 IDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA 90 (1342)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~ 90 (1342)
.|+.++..+.++...+++.|.+.+++++++|.+++++...+..+|..+.+++++|.+......+++.+++.+++++|.+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~g~~~ 82 (402)
T cd00378 3 VDPEIAEIIKKENERQRETLELIASENFTSPAVMEAMGSDLTNKYAEGYPGKRYYGGCEYVDEIEDLAIERAKKLFGAEY 82 (402)
T ss_pred cCHHHHHHHHHHHHHHHhCeeeeccCCcCCHHHHHHhcccccccccCCCCCCcccCCchHHHHHHHHHHHHHHHHhCCCc
Confidence 57888999998877778899999999999999999999887678888888888898888889999988899999999987
Q ss_pred ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH--hhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCC
Q psy13354 91 ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM--LNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKP 167 (1342)
Q Consensus 91 ~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~--~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~ 167 (1342)
..++++||++|+..++.++++|||+|++.++.++++...+.. +...|..+..++++.+. ++.+|++++++.+.+.++
T Consensus 83 ~~v~~~sgt~a~~~~l~~l~~~Gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~id~~~l~~~i~~~~~ 162 (402)
T cd00378 83 ANVQPHSGSQANLAVYFALLEPGDTIMGLDLSHGGHLTHGSFTKVSASGKLFESVPYGVDPETGLIDYDALEKMALEFKP 162 (402)
T ss_pred eeeecCCcHHHHHHHHHHhcCCCCEEEEecCccCccccccccccccccceeEEEecCCcCcccCCcCHHHHHHHHHhCCC
Confidence 656555899999999999999999999988888877665432 45556655566555552 688999999999976678
Q ss_pred eEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec-hhH
Q psy13354 168 KLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK-KYK 246 (1342)
Q Consensus 168 ~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~-~l~ 246 (1342)
+++++++++++...++++|+++|++||++||+|++|..|..+.+....++..+|++++|+||+|+|+.||++++++ +++
T Consensus 163 ~~v~~~~~~~~~~~~~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~~~~~dv~~~s~sK~l~G~~gg~i~~~~~~~~ 242 (402)
T cd00378 163 KLIVAGASAYPRPIDFKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNPLPGADVVTTTTHKTLRGPRGGLILTRKGELA 242 (402)
T ss_pred CEEEecCcccCCCcCHHHHHHHHHhcCCEEEEEccchhhhhhcccCCCcccCCcEEEeccccCCCCCCceEEEeccHHHH
Confidence 8888877788877799999999999999999999997776654443333445699999999999889999999987 888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
+.+.....++..+++..+..+++..++......+.+++++++.++++++.+.|.+.|+.+...+.+++++|++++....+
T Consensus 243 ~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~v~v~~~~~~~~ 322 (402)
T cd00378 243 KKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVVENAKALAEALKERGFKVVSGGTDNHLVLVDLRPKGIT 322 (402)
T ss_pred HHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCCeEeecCCCCeEEEEeCCccCCC
Confidence 88876555555666555566665666655544356778889999999999999999998765456789999999754445
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
...+..+++++||.+.+..+|....+++...++|++++..++.+++++|+..+
T Consensus 323 ~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~ 375 (402)
T cd00378 323 GKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEI 375 (402)
T ss_pred HHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHH
Confidence 56666778888999998777776432334568999999998888888876543
No 61
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=100.00 E-value=4.4e-31 Score=321.05 Aligned_cols=375 Identities=64% Similarity=1.031 Sum_probs=293.1
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
.+.+++.||.+.+.+.++..++++.+.|++++|++++.+++++...+.+.|..+++++.++.+......+++.+++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~la~ 82 (416)
T PRK00011 3 MDNLAEYDPEIADAIEQELKRQEEHIELIASENFVSPAVMEAQGSVLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKE 82 (416)
T ss_pred chhhhhcCHHHHHHHHHHHHHHhcCeeeecccCcCCHHHHHHHhchhhcccccCCCCccccccchHHHHHHHHHHHHHHH
Confidence 35788999999999999888889999999999999999999998887667777888888877777788888888899999
Q ss_pred HhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHH
Q psy13354 85 IFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAK 163 (1342)
Q Consensus 85 ~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~ 163 (1342)
++|.+...++.++|++|+..++.++++|||+|+++.+.++++++.+......+.+.+++.++.+ +++.+|+++++++++
T Consensus 83 ~~g~~~~~i~~~sgt~al~~~l~~l~~~gd~Vl~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~d~~~l~~~i~ 162 (416)
T PRK00011 83 LFGAEYANVQPHSGSQANAAVYFALLKPGDTILGMDLAHGGHLTHGSPVNFSGKLYNVVSYGVDEETGLIDYDEVEKLAL 162 (416)
T ss_pred HhCCCceeeecCCchHHHHHHHHHhcCCCCEEEEeccccCCccccccccccccceeeEeecCcCcccCCcCHHHHHHHHH
Confidence 9999876454448999999999999999999999888887765544333333334466666666 458899999999998
Q ss_pred hcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-
Q psy13354 164 KNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK- 242 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~- 242 (1342)
+.++++++++.++++...|+++|.++|++||+++|+|++|+.|..+.+..+..+..+|++++|+||+++|+.||+++++
T Consensus 163 ~~~~k~v~~~~~~~~~~~~~~~I~~la~~~~~~livD~a~~~g~~~~g~~~~~~~~~di~~~S~~K~l~g~~gg~i~~~~ 242 (416)
T PRK00011 163 EHKPKLIIAGASAYSRPIDFKRFREIADEVGAYLMVDMAHIAGLVAAGVHPSPVPHADVVTTTTHKTLRGPRGGLILTND 242 (416)
T ss_pred hcCCCEEEECCCcCCCccCHHHHHHHHHHcCCEEEEECcchhcccccCccCCCCCCCcEEEecCCcCCCCCCceEEEeCC
Confidence 6667888887777776679999999999999999999999887665443343444679999999999988999999996
Q ss_pred chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
+++.+.++....++..+++..+..+++..++...+.++++++.+++.++++++.+.|.+.|+++...+..++++|+.+++
T Consensus 243 ~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~i~~~~ 322 (416)
T PRK00011 243 EELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKNAKALAEALAERGFRVVSGGTDNHLVLVDLRS 322 (416)
T ss_pred HHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeeeecCCCCeEEEEeCcc
Confidence 58888887666666666665666677666776666556788899999999999999999998875433446889999865
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
...+.+.+...|+++||.+.....|.....++.+.++|++....++.+++++++..+
T Consensus 323 ~~~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l 379 (416)
T PRK00011 323 KGLTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEI 379 (416)
T ss_pred cCCCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHH
Confidence 443445566666778999986654543333344567999888877777777776543
No 62
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=1.1e-30 Score=302.01 Aligned_cols=311 Identities=23% Similarity=0.269 Sum_probs=257.9
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEcc
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~ 475 (1342)
++...+.|.+++.+|+++|+|||+||+|+||+++|..+|+.+.|..+.. ..+|+.|++|..+..+.|||+..+..
T Consensus 7 l~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~-----~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (334)
T PRK07993 7 LRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWLMCQQPQG-----HKSCGHCRGCQLMQAGTHPDYYTLTP 81 (334)
T ss_pred ChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCC-----CCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 5778899999999999999999999999999999999999999975432 35899999999999999999998865
Q ss_pred C---CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEE
Q psy13354 476 A---STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ 552 (1342)
Q Consensus 476 ~---~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~ 552 (1342)
. ...++++++++.+.+...|..+++||+|||++|.|+.++.|+|||+||+||++++||++|++++++++||+|||+.
T Consensus 82 ~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRCq~ 161 (334)
T PRK07993 82 EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRCRL 161 (334)
T ss_pred ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcccc
Confidence 4 3467999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHH
Q psy13354 553 FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 553 i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l 632 (1342)
+.|++++.+++.+||.+. .+ ++++.+..++..++|++..++..++.-. . +.-+ .....+
T Consensus 162 ~~~~~~~~~~~~~~L~~~---~~--~~~~~a~~~~~la~G~~~~Al~l~~~~~------~--~~r~--------~~~~~l 220 (334)
T PRK07993 162 HYLAPPPEQYALTWLSRE---VT--MSQDALLAALRLSAGAPGAALALLQPER------W--QQRE--------ALCQAL 220 (334)
T ss_pred ccCCCCCHHHHHHHHHHc---cC--CCHHHHHHHHHHcCCCHHHHHHHhcCch------H--HHHH--------HHHHHH
Confidence 999999999999999642 23 6677788889999999999988764210 0 0000 011122
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISI 712 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~ 712 (1342)
.+.+..++.... +..+ .+++...++..+...+|+++.++... ....+.+....+...+++++.+.+..+++.+.
T Consensus 221 ~~~~~~~~~~~~---~~~~--~~~~~~~~L~~l~~~~rD~l~~~~~~-~~~~n~d~~~~i~~~a~~~~~~~l~~~~~~l~ 294 (334)
T PRK07993 221 AYALPSGDWLSL---LPAL--NHEQAPARLHWLATLLMDALKRQHGA-AYVTNQDQPPLVAQLANHLSPARLQAILGDVC 294 (334)
T ss_pred HHHhcCCCHHHH---HHHH--cccCHHHHHHHHHHHHHHHHHHhcCC-cceeCHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 222222333222 2222 24567788999999999999998764 44566777777889999999999999999999
Q ss_pred HHHHhhcc--CCChhHHHHHHHHHhHcc
Q psy13354 713 HGRNELEL--APDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 713 ~~d~~lK~--~~~~~~~le~~ll~l~~~ 738 (1342)
++.+.+.. ..|+++.+|.+++++..+
T Consensus 295 ~~~~~l~~~~N~N~~L~le~lll~~~~~ 322 (334)
T PRK07993 295 HCREQLLSVTGVNRELLLTDLLLRIEHY 322 (334)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence 99999995 679999999999998764
No 63
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=100.00 E-value=2.4e-30 Score=295.38 Aligned_cols=311 Identities=21% Similarity=0.230 Sum_probs=253.0
Q ss_pred cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc
Q psy13354 395 GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD 474 (1342)
Q Consensus 395 Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~ 474 (1342)
=+....+.|.+++.+|+++|+|||+||+|+||+++|+.+|+.+.|..+. ...+|+.|++|..+..+.|||+..+.
T Consensus 6 W~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~-----~~~~Cg~C~sC~~~~~g~HPD~~~i~ 80 (325)
T PRK06871 6 WLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQ-----GDQPCGQCHSCHLFQAGNHPDFHILE 80 (325)
T ss_pred chHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHhcCCCCCEEEEc
Confidence 3677889999999999999999999999999999999999999997543 23599999999999999999999886
Q ss_pred c--CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEE
Q psy13354 475 A--ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ 552 (1342)
Q Consensus 475 ~--~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~ 552 (1342)
. +...+++++|++.+.+...|..+++||+|||++|.|+.++.|+|||+||+||++++||++|+.++++++||+|||+.
T Consensus 81 p~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC~~ 160 (325)
T PRK06871 81 PIDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRCQT 160 (325)
T ss_pred cccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhceE
Confidence 5 23468999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHH
Q psy13354 553 FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 553 i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l 632 (1342)
+.|.+++.+++.+||.+.. ..++..+..++..++|++..++..++.-.. +.-+ ..+..+
T Consensus 161 ~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~~~~l~~g~p~~A~~~~~~~~~--------~~r~--------~~~~~l 219 (325)
T PRK06871 161 WLIHPPEEQQALDWLQAQS-----SAEISEILTALRINYGRPLLALTFLEQGLL--------EQRK--------TFLRQF 219 (325)
T ss_pred EeCCCCCHHHHHHHHHHHh-----ccChHHHHHHHHHcCCCHHHHHHHhhCChH--------HHHH--------HHHHHH
Confidence 9999999999999998643 124445667788899999988776543110 0000 111111
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISI 712 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~ 712 (1342)
......++. +.++..+. +++...++.+|...+|+++..+........+.+....+.+.++++|.++|.++++.+.
T Consensus 220 ~~~~~~~~~---~~~~~~~~--k~~~~~~l~~l~~~~rD~l~~~~~~~~~~~n~D~~~~i~~~a~~~s~~~L~~~i~~i~ 294 (325)
T PRK06871 220 WLFYRRRSP---LELLPLFD--KELVLQQLDWLLAFLSDALKAKLDIASGWICQDLQRGILQFSQQQSAQGLLKAHQIIQ 294 (325)
T ss_pred HHHhccCCH---HHHHHHHh--hccHHHHHHHHHHHHHHHHHHHcCCCcccccHhHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 111222222 23333322 3566778999999999999998876655667777888999999999999999999999
Q ss_pred HHHHhhcc--CCChhHHHHHHHHHhH
Q psy13354 713 HGRNELEL--APDEYAGFTMTLLRML 736 (1342)
Q Consensus 713 ~~d~~lK~--~~~~~~~le~~ll~l~ 736 (1342)
++.+.+++ +.|+.+.++-.+++..
T Consensus 295 ~~r~~L~~~~~iN~~L~l~~~l~~~~ 320 (325)
T PRK06871 295 KVRSDLLQINAVNQELILLDGLTRLV 320 (325)
T ss_pred HHHHHHHcccccCHHHHHHHHHHHHH
Confidence 99999984 5688888887777654
No 64
>PRK05907 hypothetical protein; Provisional
Probab=99.98 E-value=1.9e-30 Score=296.30 Aligned_cols=294 Identities=13% Similarity=0.057 Sum_probs=247.0
Q ss_pred hHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCC
Q psy13354 399 ISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAST 478 (1342)
Q Consensus 399 ~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~ 478 (1342)
.+..+.+.+++|+ ++|++||.+- ....+.+.+.+... +...+++..
T Consensus 6 ~~~~~~~~~~~~~--~~y~~~g~~~---~~~~~~l~~~~~~~----------------------------~~~~fdg~~- 51 (311)
T PRK05907 6 SFKDFSQYYEEKR--PAVIVIGSSS---EEDKDIFIELLVSG----------------------------RKSEFDGQG- 51 (311)
T ss_pred HHHHHHHHHhcCC--ceEEEecCCc---HHHHHHHHHHhCCC----------------------------ccceecCCC-
Confidence 3466778889998 7899999998 66666666665311 112244433
Q ss_pred cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEE-EEeCCCC---CChHHHhccEEE--
Q psy13354 479 RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFI-LATTEPQ---KIPITVLSRCIQ-- 552 (1342)
Q Consensus 479 ~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlI-l~t~~~~---kl~~~L~sR~~~-- 552 (1342)
.++.++++.+++.|||+++|+|+|.+++.++....+.|.+|+++||+++++| ++. +.+ ++.+.|.+.+.+
T Consensus 52 ---~~~~~ii~~aetlPfFaerRlV~v~~~~~~~~~~~~~L~~Yl~np~~~~~liv~~~-~~d~~kkl~K~i~k~~~v~~ 127 (311)
T PRK05907 52 ---LLQQELLSWTEHFGLFASQETIGIYQAEKMSSSTQEFLIRYARNPNPHLTLFLFTT-KQECFSSLSKKLSSALCLSL 127 (311)
T ss_pred ---CCHHHHHHHHhcCCcccCeEEEEEecccccccccHHHHHHHHhCCCCCeEEEEEEe-cccHHHHHHHHHhhcceecc
Confidence 3589999999999999999999999988888777889999999999976666 554 333 344556544444
Q ss_pred -EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc-CCcHHHHHHHHHHHHhhcC--CCCCHHHHHHHhccCcHHH
Q psy13354 553 -FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA-QGSMRDALSLTDQAINYSS--EKITLNSMQEMLSIIDQKY 628 (1342)
Q Consensus 553 -i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~-~g~lr~a~~~L~kl~~~~~--~~It~e~V~~~v~~~~~~~ 628 (1342)
++|.++++.++.+|+.++++++|+.|++++++++++++ ++|+..+.++++|++.|++ +.||.++|+++++.+.+++
T Consensus 128 ~~e~~~l~e~~L~~Wi~~~~~~~g~~i~~~a~~~L~~~~~~~nL~~l~~EleKL~ly~g~~~~It~e~V~~lv~~s~e~n 207 (311)
T PRK05907 128 FGEWFADRDKRIAQLLIQRAKELGISCSLGLASLFVSKFPQTGLFEILSEFQKLLCQMGKKESLEASDIQSFVVKKEAAS 207 (311)
T ss_pred ccccCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHccCCCHHHHHHHHHHHHHhcCCCCeECHHHHHHHhcCccccc
Confidence 48999999999999999999999999999999999999 6999999999999999954 4599999999999999999
Q ss_pred HHHHHHHHHccChHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHH
Q psy13354 629 LIQILDALAEQDGNLILSIANKIEIY-NLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLF 707 (1342)
Q Consensus 629 if~l~dal~~~~~~~al~~l~~L~~~-~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~ 707 (1342)
||+|+||+..++..+|++++++|..+ |++|++|+++|++|| |+++|.+.++|..+..-..- .||.++|.++
T Consensus 208 IF~L~dai~~~~~~~Al~il~~Ll~~~ge~p~~ILall~rQf--l~~~k~l~~~g~~~~~p~~v------afs~~~L~~~ 279 (311)
T PRK05907 208 LWKLRDALLRRDRVEGHSLLRSLLSDMGEDPLGIIAFLRSQC--LYGLRSIEEQSKERKHRIFV------AYGKERLLQA 279 (311)
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhcCCChHHHHHHHHHHH--HHHHHHHHHhcCCCCCCeEE------EECHHHHHHH
Confidence 99999999999999999999999999 999999999999999 89999887777654321000 1999999999
Q ss_pred HHHHHHHHHhhccC-CChhHHHHHHHHHhHcc
Q psy13354 708 YQISIHGRNELELA-PDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 708 l~~l~~~d~~lK~~-~~~~~~le~~ll~l~~~ 738 (1342)
+..|+++|+++|++ .|+.+++|++++++|.+
T Consensus 280 ~~~l~~~D~~iKtg~~d~~~~lElli~~~~~~ 311 (311)
T PRK05907 280 LNLLFYAESLIKNNVQDPILAVETLVIRMTNL 311 (311)
T ss_pred HHHHHHHHHHHhcCCCChHHHHHHHHHHHhcC
Confidence 99999999999964 79999999999999863
No 65
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.98 E-value=4.4e-30 Score=296.27 Aligned_cols=307 Identities=19% Similarity=0.251 Sum_probs=252.1
Q ss_pred HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC---CCc
Q psy13354 403 LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA---STR 479 (1342)
Q Consensus 403 L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~---~~~ 479 (1342)
..+.+..|+++|+|||+||+|+||+++|+.+|+.++|..+. ...||+.|++|..+..+.|||+..+... ...
T Consensus 12 ~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~-----~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i 86 (328)
T PRK05707 12 WQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQ-----GGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTI 86 (328)
T ss_pred HHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCC
Confidence 34445669999999999999999999999999999997543 2469999999999999999999988653 346
Q ss_pred CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCC
Q psy13354 480 GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559 (1342)
Q Consensus 480 ~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~ 559 (1342)
++++++++++.+...|..+++||+|||++|.|+.++.|+|+|+||+||++++||++|++++++++||+|||+.+.|.+++
T Consensus 87 ~id~iR~l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc~~~~~~~~~ 166 (328)
T PRK05707 87 KVDQVRELVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRCQQQACPLPS 166 (328)
T ss_pred CHHHHHHHHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhceeeeCCCcC
Confidence 78999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHcc
Q psy13354 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQ 639 (1342)
Q Consensus 560 ~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~ 639 (1342)
.+++.+||.+... ..+++.+..++..++|++..++..++.-. . + ....+++.+..+..+
T Consensus 167 ~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~~A~~l~~~~~------~--~---------~r~~~~~~l~~~~~~ 225 (328)
T PRK05707 167 NEESLQWLQQALP----ESDERERIELLTLAGGSPLRALQLHEQGV------R--E---------QRARVLDGVKKLLKQ 225 (328)
T ss_pred HHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHHHHHHHHCcch------H--H---------HHHHHHHHHHHHhcC
Confidence 9999999976431 24566777888999999999987754310 0 0 011223333344433
Q ss_pred ChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc-ccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy13354 640 DGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI-LIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNEL 718 (1342)
Q Consensus 640 ~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~-~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~l 718 (1342)
+. .++.+...+. +++...++..|...+|+++..+..... ...+.+....+.+.+++++...|..+++.+.++...+
T Consensus 226 ~~-~~~~~~~~~~--k~~~~~~l~~l~~~~~D~l~~~~~~~~~~~~n~d~~~~l~~~a~~~~~~~L~~~~~~l~~~~~~l 302 (328)
T PRK05707 226 QQ-SASQLAESWL--KVPLLLLFDWFCDWAHDILRYQLTQDEEGLGLADMRKVLQYLAQKSPQAKVLALQDWLLEQRQKV 302 (328)
T ss_pred cc-cHHHHHHHHc--cCCHHHHHHHHHHHHHHHHHHHcCCCcccccCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Confidence 32 3444444432 456778899999999999999886443 3556777788999999999999999999999999999
Q ss_pred c--cCCChhHHHHHHHHHhHcc
Q psy13354 719 E--LAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 719 K--~~~~~~~~le~~ll~l~~~ 738 (1342)
+ ...|+.+.+|.+++++..+
T Consensus 303 ~~~~NvN~~L~le~lll~~~~~ 324 (328)
T PRK05707 303 LGKANLNRQLLLEALLVQWAGL 324 (328)
T ss_pred hccCCCCHHHHHHHHHHHHHHH
Confidence 7 4679999999999998643
No 66
>PRK07914 hypothetical protein; Reviewed
Probab=99.97 E-value=3.4e-30 Score=300.13 Aligned_cols=300 Identities=9% Similarity=0.041 Sum_probs=259.7
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccC-CCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHH
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCI-GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLE 489 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~-~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~ 489 (1342)
.++++|||||++-+........+.+.+... +. ...++..+++... ++.++ .
T Consensus 3 ~l~~iYll~G~E~~l~~~~~~~i~~~~~~~~~~-----------------------~~~n~~~~d~~~~----~~~~i-~ 54 (320)
T PRK07914 3 EPAPLHLVLGDEELLVERAVAAVLRSARQRAGT-----------------------ADVPVSRMRAGDV----STYEL-A 54 (320)
T ss_pred CCCceEEEEecHHHHHHHHHHHHHHHHhcCcCC-----------------------CCCceEEeccccC----CHHHH-H
Confidence 467899999999999999999998776421 11 1135677776543 23554 5
Q ss_pred HHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC---CChHHHhccE-EEEEEcCC-CHHHHH
Q psy13354 490 QTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ---KIPITVLSRC-IQFNLKKM-LHHDIV 564 (1342)
Q Consensus 490 ~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~---kl~~~L~sR~-~~i~~~~l-~~~el~ 564 (1342)
++.+.|+|+++|+|+|+++..+..+..+.|.+|+++|++++++|++++... ++.+++.+.+ .+++|.++ +..++.
T Consensus 55 ~~~t~plF~~rRlV~v~~~~~~~~~~~~~l~~~l~~~~~~t~lil~~~~~~~~kk~~K~L~k~g~~~v~~~~~~~~~~l~ 134 (320)
T PRK07914 55 ELLSPSLFAEERVVVLEAAAEAGKDAAALILSAAADLPPGTVLVVVHSGGGRAKALANQLRKLGAEVHPCARITKAAERA 134 (320)
T ss_pred HhcCCCCCCCceEEEEeChHhccHHHHHHHHHHHhCCCCCeEEEEEecCCcchhHHHHHHHHCCCEEEecCCCCCHHHHH
Confidence 555899999999999999988877778899999999999899988764322 4456888776 58999999 999999
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHH
Q psy13354 565 NNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLI 644 (1342)
Q Consensus 565 ~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~a 644 (1342)
.|+.+++++.|+.|+++++++|++.+|+|+..+.++++|++.|.++.||.++|+++++.+.+.++|+++|++..|+..+|
T Consensus 135 ~wi~~~a~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~vf~L~dAi~~g~~~~A 214 (320)
T PRK07914 135 DFVRKEFRSLRVKVDDDTVTALLDAVGSDLRELASACSQLVADTGGAVDAAAVRRYHSGKAEVKGFDIADKAVAGDVAGA 214 (320)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHhcCCCCCcCHHHHHHHcCCCeechHHHHHHHHHCCCHHHH
Confidence 99999999999999999999999999999999999999998887888999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCc-------ccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHh
Q psy13354 645 LSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP-------EILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNE 717 (1342)
Q Consensus 645 l~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~-------~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~ 717 (1342)
+.++++|+..|++|..|+++|+++||.|++++... +....+++..+.+.+++++||.++|.+++..|.++|.+
T Consensus 215 ~~~l~~L~~~ge~p~~il~~l~~~~r~L~~~k~~~~~~~~i~~~l~i~p~~~~~~~~~~~~~s~~~L~~~l~~l~~~D~~ 294 (320)
T PRK07914 215 AEALRWAMMRGEPHVVLADALAEAVHTIARVGPLSGDPYRLAGELGMPPWRVQKAQKQARRWSRDTVATAMRVVAALNAD 294 (320)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998531 22344556667789999999999999999999999999
Q ss_pred hccC-CChhHHHHHHHHHhHcc
Q psy13354 718 LELA-PDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 718 lK~~-~~~~~~le~~ll~l~~~ 738 (1342)
+|++ .|++.+||.+++++|.+
T Consensus 295 lK~~~~~~~~~lE~~i~~~~~~ 316 (320)
T PRK07914 295 VKGAAADADYALESAVRRVAEL 316 (320)
T ss_pred hhcCCCChHHHHHHHHHHHHHH
Confidence 9965 79999999999999974
No 67
>PRK05629 hypothetical protein; Validated
Probab=99.97 E-value=5.6e-30 Score=298.26 Aligned_cols=301 Identities=9% Similarity=0.063 Sum_probs=260.0
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHH
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQ 490 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~ 490 (1342)
.++++|||||++.+........+.+.+..... ...++..+++... ++.++++.
T Consensus 4 ~l~~vyL~~G~e~~l~~~~~~~i~~~~~~~~~-----------------------~~~n~~~~d~~e~----~~~~l~~~ 56 (318)
T PRK05629 4 VQPPVHLVLGDDEFLAERARLNIVHDIRSSMA-----------------------DSLQVTTLKASEV----SQGELLDA 56 (318)
T ss_pred cCCceEEEEeCHHHHHHHHHHHHHHHHhccCC-----------------------CCCceEEeecccC----CHHHHHHh
Confidence 57889999999998888787777776653221 1246777776542 35677765
Q ss_pred HhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC---CChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 491 TIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ---KIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 491 ~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~---kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
+ +.|+|+++|+|+|++++...+...+.++.++++|++++++|++++..+ ++.+.+++.+.+++|.++++.++..|+
T Consensus 57 ~-t~slF~~~rlV~v~~~~~~~~~~~~~l~~~l~~~~~~~~Lil~~~~~~~~kk~~K~l~k~~~~ve~~~~~~~~l~~wi 135 (318)
T PRK05629 57 L-SPSLFGEDRVIVLTNMEQAGKEPTDLALSAAVDPSPGIYLIIMHSGGGRTKSMVPKLEKIAVVHEAAKLKPRERPGWV 135 (318)
T ss_pred h-CcCccCCceEEEEeChHhcChhHHHHHHHHHhCCCCCeEEEEEcCCcchhhHHHHHHHhcceEeeCCCCCHHHHHHHH
Confidence 4 899999999999999988777677899999999999999998876443 455688889999999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHH
Q psy13354 568 CYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSI 647 (1342)
Q Consensus 568 ~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~ 647 (1342)
.++++++|++|+++++++|++.+++|+..+.++++|++.|.++.||.++|++++....+.++|+++|++..++..+|+.+
T Consensus 136 ~~~~~~~g~~i~~~A~~~L~~~~g~dl~~l~~EleKL~~~~~~~It~e~V~~~v~~~~~~~iF~l~dAv~~g~~~~Al~~ 215 (318)
T PRK05629 136 TQEFKNHGVRPTPDVVHALLEGVGSDLRELASAISQLVEDTQGNVTVEKVRAYYVGVAEVSGFDIADLACAGQVSKAVAS 215 (318)
T ss_pred HHHHHHcCCCCCHHHHHHHHHHHCccHHHHHHHHHHHHhcCCCCcCHHHHHHHhCCCccchHHHHHHHHHcCCHHHHHHH
Confidence 99999999999999999999999999999999999998888888999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC---------cccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhh
Q psy13354 648 ANKIEIYNLSYSIVLKDLSLLLHQISLIQIS---------PEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNEL 718 (1342)
Q Consensus 648 l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~---------~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~l 718 (1342)
+++|+..|++|+.|+++|.++||.+.++... ++....+++..+.+.+++++||.++|.+++..|.++|.++
T Consensus 216 l~~l~~~g~~pi~il~~l~~~~r~l~~l~~~~~~~~~~~ia~~l~i~p~~~~~~~~~ar~~s~~~L~~~l~~l~~~D~~~ 295 (318)
T PRK05629 216 TRRALQLGVSPVALAAALSMKVGQIARLYSTRGRIDSFELAKELGMPPFVVEKTAKVARNWSGDAVSEAVILMADLDAAV 295 (318)
T ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHcCCChHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999998888755332 1223355667777999999999999999999999999999
Q ss_pred cc-CCChhHHHHHHHHHhHccc
Q psy13354 719 EL-APDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 719 K~-~~~~~~~le~~ll~l~~~~ 739 (1342)
|+ +.|++.+||+++++++.+.
T Consensus 296 K~~~~d~~~~lE~~i~~~~~~~ 317 (318)
T PRK05629 296 KGQGGDPEFAIESAVRRVAELA 317 (318)
T ss_pred hCCCCCHHHHHHHHHHHHHhhc
Confidence 97 5699999999999998753
No 68
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=6.3e-29 Score=285.74 Aligned_cols=305 Identities=22% Similarity=0.260 Sum_probs=245.9
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEcc
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~ 475 (1342)
|+..++.|... .++++|+|||+||+|+||+++|+.+|+.++|..+. ....||+.|.+|..+..+.|||+..+..
T Consensus 6 ~~~~~~~l~~~--~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~----~~~~~Cg~C~~C~~~~~~~HPD~~~i~p 79 (342)
T PRK06964 6 QTDDWNRLQAL--RARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQ----PDGEPCGTCAACNWFAQGNHPDYRIVRP 79 (342)
T ss_pred cHHHHHHHHHh--cCCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCC----CCCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 45666777764 67999999999999999999999999999997532 1236999999999999999999987743
Q ss_pred C-----------------------------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC
Q psy13354 476 A-----------------------------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526 (1342)
Q Consensus 476 ~-----------------------------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p 526 (1342)
. ...++++++++.+.+...|..+++||+|||++|.|+.++.|+|||+||+|
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEP 159 (342)
T PRK06964 80 EALAAEAPGAADEAKEADADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNVAAANALLKTLEEP 159 (342)
T ss_pred ccccccccccccccccchhhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCHHHHHHHHHHhcCC
Confidence 2 13467899999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 527 ~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
|++++||++|++++++++||+|||+.+.|++++.+++.+||.+. |+ ++. +.++..++|++..++..++.
T Consensus 160 p~~t~fiL~t~~~~~LLpTI~SRcq~i~~~~~~~~~~~~~L~~~----~~--~~~--~~~l~~~~Gsp~~Al~~~~~--- 228 (342)
T PRK06964 160 PPGTVFLLVSARIDRLLPTILSRCRQFPMTVPAPEAAAAWLAAQ----GV--ADA--DALLAEAGGAPLAALALASD--- 228 (342)
T ss_pred CcCcEEEEEECChhhCcHHHHhcCEEEEecCCCHHHHHHHHHHc----CC--ChH--HHHHHHcCCCHHHHHHHHCC---
Confidence 99999999999999999999999999999999999999999753 43 332 33567789999999877532
Q ss_pred hcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCc
Q psy13354 607 YSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDS 686 (1342)
Q Consensus 607 ~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~ 686 (1342)
+. .+.. -.+++.+........+.+.+.+. +++...++.++...+|+++..+..... ..+.
T Consensus 229 ---~~--~~~~------------~~~~~~l~~~~~~~~~~~~~~~~--k~~~~~~l~~l~~~lrD~l~~~~~~~~-~~~~ 288 (342)
T PRK06964 229 ---EN--RPLR------------DWTLGQLAAGAACDAFACAETLQ--KLPVPAVLGWLQRWLYDLLAQRLAGAP-RYFP 288 (342)
T ss_pred ---Ch--HHHH------------HHHHHHHhccCchhHHHHHHHHh--hcCHHHHHHHHHHHHHHHHHHHcCCCc-eecH
Confidence 10 0111 11222333323333444444443 356677899999999999999876443 4455
Q ss_pred hhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 687 PNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 687 ~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
+....+.+.+++++...|.++++.+.+....+....|+++.+|.+++++..
T Consensus 289 d~~~~l~~~a~~~~~~~L~~~~~~i~~~~~~~~~nvn~~L~le~lll~~~~ 339 (342)
T PRK06964 289 AQRAALARCAAAVDANALARFAKAVTRQRAVENHPLAARLVFEELFLGYRE 339 (342)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhHCCCCHHHHHHHHHHHHHH
Confidence 666778899999999999999999999998888899999999999998754
No 69
>KOG0991|consensus
Probab=99.97 E-value=2.8e-29 Score=257.97 Aligned_cols=270 Identities=21% Similarity=0.291 Sum_probs=242.9
Q ss_pred HHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 377 IKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 377 ~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
.+.+|..||||..+.|+||.+..++.|.-..+.|+.|| ++|+||||+||||.+..+|++|..+..
T Consensus 13 ~~l~wVeKYrP~~l~dIVGNe~tv~rl~via~~gnmP~-liisGpPG~GKTTsi~~LAr~LLG~~~-------------- 77 (333)
T KOG0991|consen 13 YQLPWVEKYRPSVLQDIVGNEDTVERLSVIAKEGNMPN-LIISGPPGTGKTTSILCLARELLGDSY-------------- 77 (333)
T ss_pred ccchHHHhhCchHHHHhhCCHHHHHHHHHHHHcCCCCc-eEeeCCCCCchhhHHHHHHHHHhChhh--------------
Confidence 45679999999999999999999999999999999998 799999999999999999999984311
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC---ccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEE
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP---INARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFI 533 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p---~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlI 533 (1342)
...+.++|+++.+|++.++.-+..+...- -.++.|+||+||+|.++..++.+|.+++|-.+..+.|.
T Consensus 78 ----------ke~vLELNASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~gAQQAlRRtMEiyS~ttRFa 147 (333)
T KOG0991|consen 78 ----------KEAVLELNASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAGAQQALRRTMEIYSNTTRFA 147 (333)
T ss_pred ----------hhHhhhccCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhHHHHHHHHHHHHHcccchhh
Confidence 12478999999999999888777654332 13788999999999999999999999999999999999
Q ss_pred EEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCC
Q psy13354 534 LATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKIT 613 (1342)
Q Consensus 534 l~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It 613 (1342)
++||..+|+..+|.|||..++|..+++.++...|..+++.+++.++++.++.+...+.||||.++|.|+... .+.+.|+
T Consensus 148 laCN~s~KIiEPIQSRCAiLRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst~-~g~g~Vn 226 (333)
T KOG0991|consen 148 LACNQSEKIIEPIQSRCAILRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQSTV-NGFGLVN 226 (333)
T ss_pred hhhcchhhhhhhHHhhhHhhhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHHh-ccccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999986543 3456799
Q ss_pred HHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Q psy13354 614 LNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQI 672 (1342)
Q Consensus 614 ~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l 672 (1342)
.+.|-+++.......+.+++.++..++...|+++++.+-+.|.+|..|+..+-+-...+
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~~~~~~~A~~il~~lw~lgysp~Dii~~~FRv~K~~ 285 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACLKRNIDEALKILAELWKLGYSPEDIITTLFRVVKNM 285 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999887776654443
No 70
>PRK07452 DNA polymerase III subunit delta; Validated
Probab=99.97 E-value=9.9e-29 Score=289.96 Aligned_cols=298 Identities=11% Similarity=0.146 Sum_probs=253.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhh
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY 493 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~ 493 (1342)
++|||||++.+.+...++.+.+.+..+.. ...++..+++.+ .+.+.++++++.+
T Consensus 2 ~~yll~G~e~~l~~~~~~~l~~~~~~~~~-----------------------~~fn~~~~d~~~---~~~~~~~~~~~~t 55 (326)
T PRK07452 2 PIYLYWGEDDFALNQAIEKLIDQVVDPEW-----------------------KSFNYSRLDGDD---ADQAIQALNEAMT 55 (326)
T ss_pred CEEEEEcChHHHHHHHHHHHHHHhCCchh-----------------------hhcchhhcCCcc---chHHHHHHHHhcC
Confidence 57999999999999999999887753210 112455555543 2347889999999
Q ss_pred cCccCCceEEEeccCccC---CHHHHHHHHHhhcCCCCcEEEEEEe-CCCC---CChHHHhccEEEEEEcCC---CHHHH
Q psy13354 494 APINARYKIYVIDEVHML---THHAFNAMLKTLEEPPKYIKFILAT-TEPQ---KIPITVLSRCIQFNLKKM---LHHDI 563 (1342)
Q Consensus 494 ~p~~~~~rvviIDE~~~L---~~~~~~~Ll~~Le~p~~~~vlIl~t-~~~~---kl~~~L~sR~~~i~~~~l---~~~el 563 (1342)
.|||+++|+|+|++++.+ +++..+.|.+++++||+++++|+++ +..+ +..+.+.+.+.+.+|.++ +.+++
T Consensus 56 ~pff~~~rlVvv~~~~~~~~~~~~~~~~L~~~l~~~~~~~~li~~~~~~~d~r~k~~k~l~k~~~~~~~~~~~~~~~~~l 135 (326)
T PRK07452 56 PPFGSGGRLVWLKNSPLCQGCSEELLAELERTLPLIPENTHLLLTNTKKPDGRLKSTKLLQKLAEEKEFSLIPPWDTEGL 135 (326)
T ss_pred CCCCCCceEEEEeCchhhccCCHHHHHHHHHHHcCCCCCcEEEEEeCCCcchHHHHHHHHHHceeEEEecCCCcccHHHH
Confidence 999999999999998765 5667889999999999999999864 4443 455678888888888766 45779
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc---CCCCCHHHHHHHhccCcHHHHHHHHHHHHccC
Q psy13354 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS---SEKITLNSMQEMLSIIDQKYLIQILDALAEQD 640 (1342)
Q Consensus 564 ~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~---~~~It~e~V~~~v~~~~~~~if~l~dal~~~~ 640 (1342)
..|+.+++++.|+.|+++++++|++.+++|++.+.++++|++.|+ ++.||.++|++++... ++++|++++++..+|
T Consensus 136 ~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~~It~~~V~~~v~~~-~~~if~l~dai~~~~ 214 (326)
T PRK07452 136 KQLVERTAQELGVKLTPEAAELLAEAVGNDSRRLYNELEKLALYAENSTKPISAEEVKALVSNT-TQNSLQLADALLQGN 214 (326)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhCccHHHHHHHHHHHHHhccCCCCccCHHHHHHHhccC-cCcHHHHHHHHHCCC
Confidence 999999999999999999999999999999999999999999994 3359999999999886 689999999999999
Q ss_pred hHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccC------------CchhHHHHHHHHhcCCHHHHHHHH
Q psy13354 641 GNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIK------------DSPNYNEIIQLSKKFNIEQIQLFY 708 (1342)
Q Consensus 641 ~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~------------~~~~~~~~~~~a~~~s~~~L~~~l 708 (1342)
..+|+.++++|..+|++|+.|+++|+++||.++++|.+.++|.. +++....+.+++++||.++|.+++
T Consensus 215 ~~~A~~~l~~L~~~g~~p~~il~~l~~~~r~l~~~k~~~~~G~~~~~~ia~~lgi~~p~~~~~~~~~~~~~s~~~L~~~l 294 (326)
T PRK07452 215 TGKALALLDDLLDANEPALRIVATLTGQFRTWLWVKLLVESGERDVKVIAKAAGIGNPKRIYFLRKEVQGLSSQQLLKLL 294 (326)
T ss_pred HHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHhCCCCcHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999876544432 233344567889999999999999
Q ss_pred HHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 709 QISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 709 ~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
..|.++|.++|++.++..++|.+++++|.+
T Consensus 295 ~~L~~~D~~iK~g~~~~~~le~~i~~~~~~ 324 (326)
T PRK07452 295 PLLLDLEASLKQGANPINALQDKLIELCQL 324 (326)
T ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHh
Confidence 999999999999888888999999999975
No 71
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.97 E-value=5.5e-28 Score=282.54 Aligned_cols=333 Identities=20% Similarity=0.275 Sum_probs=254.0
Q ss_pred cCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCC-----CcccCCCCCCcch
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNG-----GITSQPCGKCSVC 459 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~-----~~~~~~c~~~~~~ 459 (1342)
.+|..|++|+||+.+++.|.+++.+|+++|+|||+||+|+||+++|..+++.+.|+.+...+ ..+-.+|+.|++|
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c 92 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVA 92 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHH
Confidence 68999999999999999999999999999999999999999999999999999997643221 1233459999999
Q ss_pred hhhccCCCccEEEEccC---------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcE
Q psy13354 460 VKIDNGCFMDYIEMDAA---------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYI 530 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~---------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~ 530 (1342)
..+..+.|||+..+... ....+++++++.+.+...|..++++||||||+|.++..+.|+|++++|+||+.+
T Consensus 93 ~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 93 RRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 99999999999988541 223578999999999999999999999999999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy13354 531 KFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE 610 (1342)
Q Consensus 531 vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~ 610 (1342)
+||++|++++.+.++++|||+.+.|.+++.+++.+||.+. +...+++.+..+++.++|+++.++.+++.-.
T Consensus 173 ~~IL~t~~~~~llpti~SRc~~i~l~~l~~~~i~~~L~~~----~~~~~~~~~~~l~~~s~Gsp~~Al~ll~~~~----- 243 (365)
T PRK07471 173 LFLLVSHAPARLLPTIRSRCRKLRLRPLAPEDVIDALAAA----GPDLPDDPRAALAALAEGSVGRALRLAGGDG----- 243 (365)
T ss_pred EEEEEECCchhchHHhhccceEEECCCCCHHHHHHHHHHh----cccCCHHHHHHHHHHcCCCHHHHHHHhcccc-----
Confidence 9999999999999999999999999999999999999764 3345566668899999999999998875310
Q ss_pred CCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHHHHHHhhCc-ccccCCch
Q psy13354 611 KITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNL-S-YSIVLKDLSLLLHQISLIQISP-EILIKDSP 687 (1342)
Q Consensus 611 ~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~-~-~~~il~~L~~~~r~l~~~k~~~-~~~~~~~~ 687 (1342)
. +. ...+++++......+...++.+.+.+...+. . ...++.+|...+.++++.+... ......+.
T Consensus 244 -~--~~---------~~~~~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~l~~~l~d~~~~~~~~~~~~~~~~~ 311 (365)
T PRK07471 244 -L--AL---------YRRLTALLDTLPRLDRRALHALADAAAGRDRAARFALFLDLLDRWLARLARAGARGAPPPEAVPG 311 (365)
T ss_pred -h--HH---------HHHHHHHHhccccCCHHHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHhhccCCCCccccch
Confidence 0 00 0112223222223333333444444333221 1 3446777777777777765531 01111222
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhc-cCCChhHHHHHHHHHhHcc
Q psy13354 688 NYNEIIQLSKKFNIEQIQLFYQISIHGRNELE-LAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 688 ~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK-~~~~~~~~le~~ll~l~~~ 738 (1342)
....+.+.+.+.+...|.++++.+.+.-.... .+.|++..++.+++.+...
T Consensus 312 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~Ln~~l~~~~~l~~~~~~ 363 (365)
T PRK07471 312 EAALLARLAPDARLRRWAEVWEKIGRRARRTEAVNLDRKALVLDVFGLLAEA 363 (365)
T ss_pred hhHHHHhhccchhHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHh
Confidence 23444455555567788888888888777777 4679999999999988653
No 72
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=2.2e-28 Score=280.96 Aligned_cols=286 Identities=22% Similarity=0.265 Sum_probs=225.9
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCc
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFM 468 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 468 (1342)
.|++++||+++++.|.+++++|+++|+|||+||+|+||+++|..+++.+.|. .+|+.|.+|. +..+.||
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~----------~~c~~c~~~~-~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQ----------GSPSKNIRRR-LEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHcCC----------CCCCCcHhcc-cccCCCC
Confidence 5899999999999999999999999999999999999999999999999985 2799999998 8999999
Q ss_pred cEEEEccC-----------------------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC
Q psy13354 469 DYIEMDAA-----------------------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE 525 (1342)
Q Consensus 469 d~~~i~~~-----------------------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~ 525 (1342)
|+..+... ..-++++++++.+.+...|+++++||+|||++|.|+..+.|+|+++||+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEE 150 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEE 150 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhC
Confidence 98866542 1234678999999999999999999999999999999999999999999
Q ss_pred CCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHH
Q psy13354 526 PPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAI 605 (1342)
Q Consensus 526 p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~ 605 (1342)
|| +++||+++++++++++||+|||+.++|.+++.+++.+||.+....++.. .....++..++|+++.+++.++...
T Consensus 151 Pp-~~~fILi~~~~~~Ll~TI~SRcq~i~f~~l~~~~~~~~L~~~~~~~~~~---~~~~~l~~~a~Gs~~~al~~l~~~~ 226 (314)
T PRK07399 151 PG-NGTLILIAPSPESLLPTIVSRCQIIPFYRLSDEQLEQVLKRLGDEEILN---INFPELLALAQGSPGAAIANIEQLQ 226 (314)
T ss_pred CC-CCeEEEEECChHhCcHHHHhhceEEecCCCCHHHHHHHHHHhhccccch---hHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99 7889999999999999999999999999999999999999875443322 2256788999999999999876432
Q ss_pred hhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cC-CCHHHHHHHHHHHHHHHHHHhhCccccc
Q psy13354 606 NYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YN-LSYSIVLKDLSLLLHQISLIQISPEILI 683 (1342)
Q Consensus 606 ~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~-~~~~~il~~L~~~~r~l~~~k~~~~~~~ 683 (1342)
. +..+. ++.+..+. ++...++.+.+.+.. .+ +.-..++..+..+|+. +
T Consensus 227 ~-----~~~~~-------------~~~~~~~~-~~~~~~~~~a~~~~~~~~~e~Q~~~l~~~~~~~~~----~------- 276 (314)
T PRK07399 227 S-----IPPEL-------------LQKLEQPP-KSPLEALELAKDISEELDIEQQLWLIDYLQQHYWQ----K------- 276 (314)
T ss_pred H-----HHHHH-------------HHHHHhcc-cCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH----h-------
Confidence 1 11111 12222222 344555555444431 11 1122344444444433 0
Q ss_pred CCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 684 KDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 684 ~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
.....++..+.++.+.+....++++.+|.++++++.
T Consensus 277 ------------------~~~~~~~~~l~~a~~~l~~nvn~~lv~e~~~l~l~~ 312 (314)
T PRK07399 277 ------------------TKNRQLLKQLEKLRKQLLSYVQPRLAWEVTLLELSQ 312 (314)
T ss_pred ------------------hcchHHHHHHHHHHHHHHHcCCcchhHHHHHHHHhc
Confidence 013567888899999999999999999999999874
No 73
>PRK08487 DNA polymerase III subunit delta; Validated
Probab=99.96 E-value=6.8e-28 Score=281.56 Aligned_cols=303 Identities=13% Similarity=0.109 Sum_probs=255.9
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG 480 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~ 480 (1342)
+.+...+++|+++++|||||++-+.+......+.+.+..... ..+ +..+ .
T Consensus 4 ~~l~~~lk~~~l~~vyll~GeE~yli~~~~~~i~~~~~~~~~------------------------~~~-~~~~--~--- 53 (328)
T PRK08487 4 KELDTLLKQNKLPNAFLLYGEDEFQIELYAKKISEKFKPENE------------------------LKT-LYFD--E--- 53 (328)
T ss_pred HHHHHHHhcCCCCceEEEecCchhHHHHHHHHHHHHhcCchH------------------------hhh-hchh--h---
Confidence 578888999999999999999999999999999987752110 001 1111 1
Q ss_pred HHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCC---ChHHHhcc--EEEEEE
Q psy13354 481 INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQK---IPITVLSR--CIQFNL 555 (1342)
Q Consensus 481 ~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~k---l~~~L~sR--~~~i~~ 555 (1342)
.++.++++.+.+.|+|+++|+|+|+++..+.....+.|.+++++|++.+++|+.....++ +.+.+... +..++|
T Consensus 54 -~~~~~i~~~~~t~plF~~~rlViv~~~~~~~~~~~~~L~~~l~~~~~~~~lv~~~~~~~k~kkl~k~~~~~k~~~~v~~ 132 (328)
T PRK08487 54 -YDFEQAKDFLSQSSLFGGKNLLIIKLDKKIPKKELKLLIELCEKNSDNYFIIELYGADSKTKDIEKLFQKKDEAVFVRF 132 (328)
T ss_pred -ccHHHHHHHHhcccccCCceEEEEecccccCHHHHHHHHHHHhcCCCCEEEEEecCCcchhHHHHHHhccCCCceEEEe
Confidence 357899999999999999999999998777776778999999999888888876555443 23444433 678999
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHH
Q psy13354 556 KKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDA 635 (1342)
Q Consensus 556 ~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~da 635 (1342)
.++++.++..|+.+++++.|+.|+++++++|+..+++|+..+.+||+|+..|.+ .||.++|++++..+.+.++|+++++
T Consensus 133 ~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~ELeKL~ly~~-~It~edV~~~v~~~~e~~vF~l~da 211 (328)
T PRK08487 133 FKPNAREALELLQERAKELGLDIDQNALNHLYFIHNEDLALAANELEKLAILNE-PITLKDIQELVFGLGSVSFEDFFEK 211 (328)
T ss_pred eCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHHhcC-CCCHHHHHHHhcccccccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999965 7999999999999999999999999
Q ss_pred HHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcc----------cccC-CchhHHHHHHHHhcCCHHHH
Q psy13354 636 LAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPE----------ILIK-DSPNYNEIIQLSKKFNIEQI 704 (1342)
Q Consensus 636 l~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~----------~~~~-~~~~~~~~~~~a~~~s~~~L 704 (1342)
+.+++ .|+.++++|..+|++|+.|+++|+++||+|++++.... .+.. +++..+++.+++++||.++|
T Consensus 212 i~~g~--~a~~~l~~L~~~g~~pi~Il~~L~r~~~~L~~i~~~~~~~~~~~~a~~~~~~~~~f~~~~~~~q~~~~s~~~L 289 (328)
T PRK08487 212 LLNKK--DIKDDLEKLLEEGFNEIALLNSLERFFYQLFLFFAYIKINGKPDAKEILGYKPPKQIAENLAKQAIKIKEAQY 289 (328)
T ss_pred HHCCC--cHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHhCCCCCHHHHHHHHHHHhccCHHHH
Confidence 99999 58899999999999999999999999999987653211 1222 34567778899999999999
Q ss_pred HHHHHHHHHHHHhhccC--CChhHHHHHHHHHhHc
Q psy13354 705 QLFYQISIHGRNELELA--PDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 705 ~~~l~~l~~~d~~lK~~--~~~~~~le~~ll~l~~ 737 (1342)
.+++..|+++|.++|++ .+....+|++++.+..
T Consensus 290 ~~~l~~L~e~D~~lK~g~~~~~~~~~~~~~~~~~~ 324 (328)
T PRK08487 290 KEIFELLLEWELELKTGQKIDKNLFLLSTLIKIQK 324 (328)
T ss_pred HHHHHHHHHHHHHHHcCCCccHHHHHHHHHHHHHH
Confidence 99999999999999975 4677788988888753
No 74
>PRK06585 holA DNA polymerase III subunit delta; Reviewed
Probab=99.96 E-value=1.7e-27 Score=281.35 Aligned_cols=310 Identities=12% Similarity=0.052 Sum_probs=257.5
Q ss_pred HHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC
Q psy13354 402 SLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG 480 (1342)
Q Consensus 402 ~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~ 480 (1342)
.+...+.+ ....++|||||++.+.....++.+.+.+..... ...++..+++....
T Consensus 8 ~~~~~l~~~~~~~~~yll~G~e~~li~~~~~~l~~~~~~~~~-----------------------~~fn~~~~~~~e~~- 63 (343)
T PRK06585 8 EVDRFLARPDPKIRAVLLYGPDRGLVRERARRLAKSVVPDLD-----------------------DPFAVVRLDGDDLD- 63 (343)
T ss_pred HHHHHHhCCCCCCeEEEEeCCchHHHHHHHHHHHHHhcCCCC-----------------------CCcceeeccHHHhh-
Confidence 34445554 346689999999999999999999988753110 11234555443211
Q ss_pred HHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC---CChHHHh--ccEEEEEE
Q psy13354 481 INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ---KIPITVL--SRCIQFNL 555 (1342)
Q Consensus 481 ~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~---kl~~~L~--sR~~~i~~ 555 (1342)
.++.++++.+.+.|+|+++|+|+|++++ +...+.|.+++++|++++++|+...+.+ ++.+.+. ..+..+.|
T Consensus 64 -~~~~~~~~~~~t~slF~~~rlViv~~~~---~~~~~~L~~~l~~~~~~~~lil~~~~~~~~~kl~k~~~~~~~~~~v~~ 139 (343)
T PRK06585 64 -ADPARLEDEANAISLFGGRRLIWVRAGS---KNLAAALKALLESPPGDAFIVIEAGDLKKGSSLRKLFETAAYAAAIPC 139 (343)
T ss_pred -cCHHHHHHHHhCCCCCCCceEEEEECCc---hhHHHHHHHHHcCCCCCcEEEEEcCCCCcccHHHHHHhcCCCeeEEec
Confidence 1378999999999999999999999654 3456789999999999999988776554 3344443 34578899
Q ss_pred cCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC--CCCCHHHHHHHhccCcHHHHHHHH
Q psy13354 556 KKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS--EKITLNSMQEMLSIIDQKYLIQIL 633 (1342)
Q Consensus 556 ~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~--~~It~e~V~~~v~~~~~~~if~l~ 633 (1342)
.+++..++..|+.+++++.|++++++++++|++.++||++.+.++|+|+..|++ +.||.++|+++++...+.++|+++
T Consensus 140 ~~~~~~~l~~~i~~~~~~~g~~i~~~a~~~L~~~~g~dl~~l~~EleKL~ly~~~~~~It~edV~~lv~~~~e~~if~l~ 219 (343)
T PRK06585 140 YADDERDLARLIDDELAEAGLRITPDARALLVALLGGDRLASRNEIEKLALYAHGKGEITLDDVRAVVGDASALSLDDAA 219 (343)
T ss_pred CCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHhCCcccccHHHHH
Confidence 999999999999999999999999999999999999999999999999999974 469999999999999999999999
Q ss_pred HHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCch------------hHHHHHHHHhcCCH
Q psy13354 634 DALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSP------------NYNEIIQLSKKFNI 701 (1342)
Q Consensus 634 dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~------------~~~~~~~~a~~~s~ 701 (1342)
|++.++|..+|+.+++.|+.+|++|+.|+++|+++||+|++++...+.|....+ ..+.+.+++++||.
T Consensus 220 dai~~~~~~~a~~~l~~ll~~g~~p~~il~~L~~~~r~L~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~s~ 299 (343)
T PRK06585 220 DAALAGDLAAFERALDRALAEGTAPVLILRAALRHFQRLHIVRLKVENGKSAEQAIASLRPPVFFKRKPDFEKALRRWSL 299 (343)
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHhhCCCCCcchHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999999999876544433211 22347899999999
Q ss_pred HHHHHHHHHHHHHHHhhccC-CChhHHHHHHHHHhHccc
Q psy13354 702 EQIQLFYQISIHGRNELELA-PDEYAGFTMTLLRMLVFQ 739 (1342)
Q Consensus 702 ~~L~~~l~~l~~~d~~lK~~-~~~~~~le~~ll~l~~~~ 739 (1342)
++|.+++..|.++|.++|++ .+++..+|.+++++|..+
T Consensus 300 ~~L~~~l~~l~~~d~~lK~~~~~~~~~le~~i~~~~~~~ 338 (343)
T PRK06585 300 ERLLRALERLQAAELDCRRNPALADAIARRVLLSIAVRA 338 (343)
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999965 688999999999999743
No 75
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=3e-27 Score=269.39 Aligned_cols=301 Identities=20% Similarity=0.254 Sum_probs=238.0
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEcc
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~ 475 (1342)
+....+.|.+++..++++|+|||+||+|+||+++|+.+|+.+.|... ...+|+.|++|..+..+.|||+..+..
T Consensus 8 l~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~------~~~~Cg~C~sC~~~~~g~HPD~~~i~p 81 (319)
T PRK06090 8 LVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRALLCQNY------QSEACGFCHSCELMQSGNHPDLHVIKP 81 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCC------CCCCCCCCHHHHHHHcCCCCCEEEEec
Confidence 67788999999999999999999999999999999999999999752 236899999999999999999998866
Q ss_pred C---CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEE
Q psy13354 476 A---STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ 552 (1342)
Q Consensus 476 ~---~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~ 552 (1342)
. ...++++++++.+.+...|..+++||+|||++|.|+.++.|+|+|+||+||++++||++|++++++++||+|||+.
T Consensus 82 ~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRCq~ 161 (319)
T PRK06090 82 EKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRCQQ 161 (319)
T ss_pred CcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhccee
Confidence 4 3457899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHH
Q psy13354 553 FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 553 i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l 632 (1342)
+.|++++.+++.+||.+ .|.. ....+++.++|++..+...++. +.. +.- ...+..+
T Consensus 162 ~~~~~~~~~~~~~~L~~----~~~~----~~~~~l~l~~G~p~~A~~~~~~------~~~--~~~--------~~~~~~l 217 (319)
T PRK06090 162 WVVTPPSTAQAMQWLKG----QGIT----VPAYALKLNMGSPLKTLAMMKE------GGL--EKY--------HKLERQL 217 (319)
T ss_pred EeCCCCCHHHHHHHHHH----cCCc----hHHHHHHHcCCCHHHHHHHhCC------CcH--HHH--------HHHHHHH
Confidence 99999999999999864 3543 2356788899999999877531 000 000 1122344
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISI 712 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~ 712 (1342)
.+.+..+. ...+.+...+.... ...+..|...++++++++.+ ..+.+....+... .+++...|.+.++.+.
T Consensus 218 ~~~l~~~~-~~~~~~a~~~~~~~---~~~l~~L~~ll~Dll~~~~g----~~~~~~~~~~~~l-~~~~~~~l~~~~~~l~ 288 (319)
T PRK06090 218 VDALSGPV-SDQLKCASLIAADP---LTHLSWLWLLLTDAQKVHFG----VQNEYYLPGSAAL-GPFTYSGLYVSTAKLE 288 (319)
T ss_pred HHHHhcCc-ccHHHHHHHHhcCc---HHHHHHHHHHHHHHHHHHhC----CcchhhhHHHHHH-HhhCHHHHHHHHHHHH
Confidence 44444443 34455555543322 23667788899999988865 2223333334444 6668999999999999
Q ss_pred HHHHhhcc--CCChhHHHHHHHHHh
Q psy13354 713 HGRNELEL--APDEYAGFTMTLLRM 735 (1342)
Q Consensus 713 ~~d~~lK~--~~~~~~~le~~ll~l 735 (1342)
++.+.+.. ..++...+|.++++.
T Consensus 289 ~~~~~L~~~~~ln~elll~~lll~~ 313 (319)
T PRK06090 289 RLKEQLQQFSGLNTELLIMNWLIES 313 (319)
T ss_pred HHHHHHHhccccCHHHHHHHHHHHH
Confidence 99999984 347777777777765
No 76
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.96 E-value=4.9e-27 Score=262.19 Aligned_cols=256 Identities=25% Similarity=0.368 Sum_probs=223.2
Q ss_pred HHHhhccCCCCccccccchhhH---HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHIS---KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~---~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
.+|+.+.||++|++++||+|.+ ..|.++++.|.+++ ++||||||+||||+|++|++..++
T Consensus 12 ~PLA~rmRP~~lde~vGQ~HLlg~~~~lrr~v~~~~l~S-mIl~GPPG~GKTTlA~liA~~~~~---------------- 74 (436)
T COG2256 12 MPLAERLRPKSLDEVVGQEHLLGEGKPLRRAVEAGHLHS-MILWGPPGTGKTTLARLIAGTTNA---------------- 74 (436)
T ss_pred cChHHHhCCCCHHHhcChHhhhCCCchHHHHHhcCCCce-eEEECCCCCCHHHHHHHHHHhhCC----------------
Confidence 4899999999999999999998 67999999999986 799999999999999999998874
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
+|..+++. ..++.+++++++.+......+++.|++|||+|.|++..+++||..+|+. .++||.+
T Consensus 75 -------------~f~~~sAv-~~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G--~iilIGA 138 (436)
T COG2256 75 -------------AFEALSAV-TSGVKDLREIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENG--TIILIGA 138 (436)
T ss_pred -------------ceEEeccc-cccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcChhhhhhhhhhhcCC--eEEEEec
Confidence 57777765 5678999999999988877788999999999999999999999999984 7889999
Q ss_pred eCCCC--CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh--cCCC-----cchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 536 TTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK--ENIK-----FETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 536 t~~~~--kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~--~g~~-----i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
|++.. .+-++|+|||+++.|++++.+++.+.|++.+.. .|+. +++++.++|+..++||.|.++|.||-+..
T Consensus 139 TTENPsF~ln~ALlSR~~vf~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aLN~LE~~~~ 218 (436)
T COG2256 139 TTENPSFELNPALLSRARVFELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRALNLLELAAL 218 (436)
T ss_pred cCCCCCeeecHHHhhhhheeeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 98877 456899999999999999999999999984443 4544 78999999999999999999999999887
Q ss_pred hcCC--CCCHHHHHHHhccCc----------HHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHH
Q psy13354 607 YSSE--KITLNSMQEMLSIID----------QKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSL 667 (1342)
Q Consensus 607 ~~~~--~It~e~V~~~v~~~~----------~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~ 667 (1342)
.+.. .++.++++++++... -+.+..+.+++...|.+.|+..+.+|++.|++|..|...|.+
T Consensus 219 ~~~~~~~~~~~~l~~~l~~~~~~~Dk~gD~hYdliSA~hKSvRGSD~dAALyylARmi~~GeDp~yiARRlv~ 291 (436)
T COG2256 219 SAEPDEVLILELLEEILQRRSARFDKDGDAHYDLISALHKSVRGSDPDAALYYLARMIEAGEDPLYIARRLVR 291 (436)
T ss_pred hcCCCcccCHHHHHHHHhhhhhccCCCcchHHHHHHHHHHhhccCCcCHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 7643 356899998886422 246777888888999999999999999999999988766655
No 77
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=8.2e-27 Score=271.27 Aligned_cols=219 Identities=25% Similarity=0.362 Sum_probs=193.7
Q ss_pred hccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCC-CcccCCCCCCcchhh
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNG-GITSQPCGKCSVCVK 461 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~-~~~~~~c~~~~~~~~ 461 (1342)
....|..|.+++||+++++.|..++..|+++|++||+||+|+|||++|+.+++.+.|....... .....+|+.|.+|..
T Consensus 15 ~~~~P~~~~~l~Gh~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~ 94 (351)
T PRK09112 15 GVPSPSENTRLFGHEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQ 94 (351)
T ss_pred CCCCCCchhhccCcHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHH
Confidence 4479999999999999999999999999999999999999999999999999999995321111 122458999999999
Q ss_pred hccCCCccEEEEccC---------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEE
Q psy13354 462 IDNGCFMDYIEMDAA---------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKF 532 (1342)
Q Consensus 462 ~~~~~~~d~~~i~~~---------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vl 532 (1342)
+..+.|||+..+... ...++++++++.+.+...|..+++|||||||+|.|+.++.|+|++.+|+|+..++|
T Consensus 95 i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~f 174 (351)
T PRK09112 95 IAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARALF 174 (351)
T ss_pred HHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceE
Confidence 999999999877432 22357899999999988899999999999999999999999999999999999999
Q ss_pred EEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 533 ILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 533 Il~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
|++++.+.++.++|+|||..+.|.+++.+++.+||.+.....+ ++++++..+++.++|++|.++++++.
T Consensus 175 iLit~~~~~llptIrSRc~~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s~G~pr~Al~ll~~ 243 (351)
T PRK09112 175 ILISHSSGRLLPTIRSRCQPISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRSKGSVRKALLLLNY 243 (351)
T ss_pred EEEECChhhccHHHHhhccEEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHcCCCHHHHHHHHhc
Confidence 9999999999999999999999999999999999988544333 77999999999999999999988754
No 78
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.96 E-value=1.3e-26 Score=267.09 Aligned_cols=306 Identities=20% Similarity=0.284 Sum_probs=249.1
Q ss_pred ccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEE
Q psy13354 394 IGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEM 473 (1342)
Q Consensus 394 vGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i 473 (1342)
+-++...+.+... .++++|+|||+||+|+|||++|+.+|+.++|..+. ....+|+.|++|..+..+.|||+..+
T Consensus 4 PW~~~~w~~l~~~--~~r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~----~~~~~Cg~C~~C~~~~~~~HpD~~~~ 77 (325)
T PRK08699 4 PWHQEQWRQIAEH--WERRPNAWLFAGKKGIGKTAFARFAAQALLCETPA----PGHKPCGECMSCHLFGQGSHPDFYEI 77 (325)
T ss_pred CccHHHHHHHHHh--cCCcceEEEeECCCCCCHHHHHHHHHHHHcCCCCC----CCCCCCCcCHHHHHHhcCCCCCEEEE
Confidence 3456667777766 57999999999999999999999999999997532 12359999999999999999999999
Q ss_pred ccCC----------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCCh
Q psy13354 474 DAAS----------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIP 543 (1342)
Q Consensus 474 ~~~~----------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~ 543 (1342)
+..+ ..++++++++.+.+...|..+++||++||+++.|+.++.++|++++|+|+..+.||++|++++.++
T Consensus 78 ~p~~~~~~~g~~~~~I~id~iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll 157 (325)
T PRK08699 78 TPLSDEPENGRKLLQIKIDAVREIIDNVYLTSVRGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVL 157 (325)
T ss_pred ecccccccccccCCCcCHHHHHHHHHHHhhCcccCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhCh
Confidence 7642 247899999999999999999999999999999999999999999999998899999999999999
Q ss_pred HHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhcc
Q psy13354 544 ITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSI 623 (1342)
Q Consensus 544 ~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~ 623 (1342)
+++.|||+.+.|.+++.+++..||.+ .|.. +.. ..+ ..++|.+..+.. +...+.
T Consensus 158 ~ti~SRc~~~~~~~~~~~~~~~~L~~----~~~~--~~~-~~l-~~~~g~p~~~~~---------------~~~~~~--- 211 (325)
T PRK08699 158 PTIKSRCRKMVLPAPSHEEALAYLRE----RGVA--EPE-ERL-AFHSGAPLFDEE---------------PELRAL--- 211 (325)
T ss_pred HHHHHHhhhhcCCCCCHHHHHHHHHh----cCCC--cHH-HHH-HHhCCChhhhcC---------------chHHHH---
Confidence 99999999999999999999999964 3442 221 223 346776632210 000000
Q ss_pred CcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHH
Q psy13354 624 IDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQ 703 (1342)
Q Consensus 624 ~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~ 703 (1342)
--++++.+...+....+.+...+...+.+...++.+|...+|+++.++.... ...+.+....+.+.+++++...
T Consensus 212 -----r~~~~~~l~~~~~~~~l~~~~~~~~~k~~~~~~l~~l~~~~rDll~~~~~~~-~~~~~d~~~~l~~~a~~~~~~~ 285 (325)
T PRK08699 212 -----RIKLLDILAEPRLLKILDYAALFDKEKLPLAVFVGWMQKWLVDLGLCLQHMK-PVYYPAYEDRLLQTASGFRPRN 285 (325)
T ss_pred -----HHHHHHHHHccChhhHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHcCCC-cccCHhHHHHHHHHHHhcCHHH
Confidence 0133444555566667777777777677888899999999999999987643 3456666778899999999999
Q ss_pred HHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 704 IQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 704 L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
|.++++.+.+....+..+.|+++.+|.+++++..
T Consensus 286 L~~~~~~l~~~~~~l~~n~n~~L~le~lll~~~~ 319 (325)
T PRK08699 286 VFAAEDMLKQLAPYGFHTLNVKMQIEHLLINYLE 319 (325)
T ss_pred HHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999854
No 79
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=99.95 E-value=7.7e-27 Score=271.10 Aligned_cols=318 Identities=23% Similarity=0.295 Sum_probs=261.8
Q ss_pred CceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..+..++++||++.+ +++++.+++. .|+.|.++++.. +....+.+||+ .+++++|.+.+++|+ ||..||
T Consensus 39 ~~~~nf~SNdYLGLa~~~~~~~a~~~~~~-~~g~g~~gsR~i~G~~~~h~~LE~----~lA~f~g~e~al~f~-SGy~AN 112 (388)
T COG0156 39 RKVLNFCSNDYLGLASHPELIEAAKAAIR-RYGVGAGGSRLISGTSDLHVELEE----ELADFLGAEAALLFS-SGFVAN 112 (388)
T ss_pred ceeEeeeccCcccccCCHHHHHHHHHHHH-HhCCCCCCcCcccCCcHHHHHHHH----HHHHHhCCCcEEEEc-ccchhH
Confidence 346678999999987 8899888885 677777777765 55777777888 999999999999999 999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--C--CeEEEEcCCCCC
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--K--PKLIIAGASAYS 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~--~~liv~~~s~~~ 178 (1342)
..++.++++++|.|+.-. -.|.+....++..+. +.+.+.++ |+++|++++.+. . ...+|++.+.++
T Consensus 113 ~~~i~~l~~~~dli~~D~---lnHASiidG~rls~a--~~~~f~Hn-----D~~~Le~~l~~~~~~~~~~~~IvtegVfS 182 (388)
T COG0156 113 LGLLSALLKKGDLIFSDE---LNHASIIDGIRLSRA--EVRRFKHN-----DLDHLEALLEEARENGARRKLIVTEGVFS 182 (388)
T ss_pred HHHHHHhcCCCcEEEEec---hhhhhHHHHHHhCCC--cEEEecCC-----CHHHHHHHHHhhhccCCCceEEEEecccc
Confidence 999999999999999433 455666666666666 55666766 899999999762 2 234444465655
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCCCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHH
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKII 249 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l 249 (1342)
..+|+++|+++|++||+++++||||+.|.+++. .+.+.. ...||+++|++|+| |..|||+.++..+.+++
T Consensus 183 MdGdiApL~~l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~e~~g~~~~~vdi~~gTlsKAl-Gs~Gg~v~g~~~~~d~L 261 (388)
T COG0156 183 MDGDIAPLPELVELAEKYGALLYVDEAHAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKAL-GSSGGYIAGSAALIDYL 261 (388)
T ss_pred CCCCcCCHHHHHHHHHHhCcEEEEEccccccccCCCCccHHHHhCCCCccceEEEEEchhhh-cccCceeeCcHHHHHHH
Confidence 667999999999999999999999999998752 223333 23589999999999 88999999999999999
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
.....++.+++...|..++++.+..+.+. ...+.++++.++..++++.+...|+.+ .+..++++++.+.++....++
T Consensus 262 ~~~ar~~ifStalpP~~aaa~~~al~~l~-~~~~~r~~L~~~~~~~~~~~~~~~~~~--~~s~s~I~pv~~gd~~~a~~~ 338 (388)
T COG0156 262 RNRARPFIFSTALPPAVAAAALAALRILE-EGPERRERLQELAAFFRSLLKALGLVL--LPSESPIIPVILGDEERALEA 338 (388)
T ss_pred HHhCCceeccCCCCHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHhcCCcc--CCCCCCeeeeEeCCHHHHHHH
Confidence 99999999999999999988888888876 555678999999999998887778876 346788999999887767788
Q ss_pred HHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
...++++ ||++.+..+|.+|.+ ..++|+++++.+|.
T Consensus 339 s~~l~~~-Gi~v~~i~~PTVp~g---tarlRi~lta~ht~ 374 (388)
T COG0156 339 SRALLEE-GIYVSAIRPPTVPKG---TARLRITLTAAHTE 374 (388)
T ss_pred HHHHHHC-CeeEeeecCCCCCCC---cceEEEEecCCCCH
Confidence 8888888 999999999999976 78999999998874
No 80
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.95 E-value=5.4e-26 Score=265.96 Aligned_cols=294 Identities=18% Similarity=0.237 Sum_probs=240.3
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|.+||||++|++++||+++++.+...+++|++++++||+||+|+|||++++++++.+.+
T Consensus 9 ~~w~~kyrP~~~~~~~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~------------------- 69 (316)
T PHA02544 9 FMWEQKYRPSTIDECILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGA------------------- 69 (316)
T ss_pred CcceeccCCCcHHHhcCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCc-------------------
Confidence 5799999999999999999999999999999999999999999999999999999998752
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHH-HHHHHhhcCccCCceEEEeccCccC-CHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQ-LLEQTIYAPINARYKIYVIDEVHML-THHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~-ii~~~~~~p~~~~~rvviIDE~~~L-~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
++..++++. ..++.+++ +.+.+...|+.+++++|+|||+|.+ ..+..+.|..++++++.++.+|+++
T Consensus 70 ----------~~~~i~~~~-~~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~ 138 (316)
T PHA02544 70 ----------EVLFVNGSD-CRIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITA 138 (316)
T ss_pred ----------cceEeccCc-ccHHHHHHHHHHHHHhhcccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEc
Confidence 456666665 23555655 3345556677788999999999999 6667788888999999999999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHH-------HHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLC-------YILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS 609 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~-------~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~ 609 (1342)
+..+++.++|++||..+.|+.|+.++...|+. .++.++|+.++++++..+++.+.|++|.+++.++.... .
T Consensus 139 n~~~~l~~~l~sR~~~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~d~r~~l~~l~~~~~--~ 216 (316)
T PHA02544 139 NNKNGIIEPLRSRCRVIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFPDFRRTINELQRYAS--T 216 (316)
T ss_pred CChhhchHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHc--c
Confidence 99999999999999999999999988776644 44556899999999999999999999999999986553 4
Q ss_pred CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhH
Q psy13354 610 EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNY 689 (1342)
Q Consensus 610 ~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~ 689 (1342)
+.|+.+++..+. ...++++++++...+..++..... ..+.++..++..+...+..
T Consensus 217 ~~i~~~~l~~~~----~~~~~~l~~~l~~~d~~~~~~~~~---~~~~~~~~~l~~~~~~~~~------------------ 271 (316)
T PHA02544 217 GKIDAGILSEVT----NSDIDDVVEALKAKDFKAVRALAP---NYANDYASFVGKLYDELYP------------------ 271 (316)
T ss_pred CCCCHHHHHHhh----HHHHHHHHHHHHcCCHHHHHHHHH---HhccCHHHHHHHHHHHHHH------------------
Confidence 679998888765 678899999998888777665222 2255665555544433311
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 690 NEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 690 ~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
......+.++++.+.+.+..+..+.++++.+|.+++++|.
T Consensus 272 --------~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~le~~l~~~~~ 311 (316)
T PHA02544 272 --------QVTPPSIIRLIEIIGENNQYHGFAADQEIHLLYLLTQLML 311 (316)
T ss_pred --------hCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 1234567789999999999999999999999999999873
No 81
>PRK05574 holA DNA polymerase III subunit delta; Reviewed
Probab=99.95 E-value=6.3e-26 Score=268.42 Aligned_cols=309 Identities=14% Similarity=0.156 Sum_probs=260.9
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCc
Q psy13354 400 SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR 479 (1342)
Q Consensus 400 ~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~ 479 (1342)
.+.+...++++ +.+.|+|||++-+-+...++.+.+.....+ ....++..+++..
T Consensus 5 ~~~~~~~~~~~-~~~~~li~G~d~~l~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~d~~~-- 58 (340)
T PRK05574 5 PEQLEKQLKKG-LAPLYLLYGDEPLLLQEAKDAIRAAARAQG-----------------------FDERNVFTFDGSE-- 58 (340)
T ss_pred HHHHHHHHhCC-CCceEEEEcCcHHHHHHHHHHHHHHHHcCC-----------------------CceeeEEEeecCC--
Confidence 35667778877 899999999998888888888887654211 0112445555543
Q ss_pred CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH----HHHHHHHhhcCCCC--cEEEEEEeCCCC---CC---hHHHh
Q psy13354 480 GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----AFNAMLKTLEEPPK--YIKFILATTEPQ---KI---PITVL 547 (1342)
Q Consensus 480 ~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----~~~~Ll~~Le~p~~--~~vlIl~t~~~~---kl---~~~L~ 547 (1342)
.++.++++.+.+.|+|+++|+|+|++++.+... ....|.+++ +|++ .+++++.++..+ ++ .+++.
T Consensus 59 --~~~~~l~~~~~t~~lF~~~klvii~~~~~l~~~~~~~~l~~l~~~l-~~~~~~~~~li~~~~~~~~~~k~~k~~k~~~ 135 (340)
T PRK05574 59 --TDWDDVLEACQSLPLFSDRKLVELRLPEFLTGAKGEKALKRLEAYL-NPLPHPDLLLIVRLPKLDKAKKKSAWFKALK 135 (340)
T ss_pred --CCHHHHHHHhhccCccccCeEEEEECCCCCCchhHHHHHHHHHHhc-cCCCCCcEEEEEECCcCCHHHHhhHHHHHHH
Confidence 248889999999999999999999999988643 345667777 5554 456666655544 33 67888
Q ss_pred ccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC-CCCCHHHHHHHhccCcH
Q psy13354 548 SRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-EKITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 548 sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~-~~It~e~V~~~v~~~~~ 626 (1342)
+++.+++|.+++..++..|+...+++.|+.++++++++|++.+++|+..+.++++|+..|++ +.||.++|++++....+
T Consensus 136 ~~~~~~~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~El~KL~l~~~~~~It~~~I~~~i~~~~~ 215 (340)
T PRK05574 136 KKAVVVEAQPPKEAELPQWIQQRLKQQGLQIDAAALQLLAERVEGNLLALAQELEKLALLYPDGKITLEDVEEAVPDSAR 215 (340)
T ss_pred hCceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCchHHHHHHHHHHHHhhcCCCCCCHHHHHHHHhhhhc
Confidence 89999999999999999999999999999999999999999999999999999999999974 44999999999999999
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc----------CCchhHHHHHHHH
Q psy13354 627 KYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI----------KDSPNYNEIIQLS 696 (1342)
Q Consensus 627 ~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~----------~~~~~~~~~~~~a 696 (1342)
.++|+++|++..++...++.+++.+...|++|+.++++|.++||+++.++...+.+. .+++..+.+.+++
T Consensus 216 ~~~f~l~dai~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~l~~~k~~~~~g~~~~~~~~~~~i~~~~~~~~~~~~ 295 (340)
T PRK05574 216 FDVFDLVDAILAGKIKRALRILDGLRLEGEEPIKLLAALQREFRLLLQLKILSQQGYPLQQLAKELRVWPYRVKLALRAL 295 (340)
T ss_pred CCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCChhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999986654433 3445566678999
Q ss_pred hcCCHHHHHHHHHHHHHHHHhhccC--CChhHHHHHHHHHhHc
Q psy13354 697 KKFNIEQIQLFYQISIHGRNELELA--PDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 697 ~~~s~~~L~~~l~~l~~~d~~lK~~--~~~~~~le~~ll~l~~ 737 (1342)
++||.++|.+++..|.++|.++|++ .+++..+|.+++++|.
T Consensus 296 ~~~s~~~L~~~l~~L~~~d~~iK~~~~~~~~~~le~~ii~l~~ 338 (340)
T PRK05574 296 QRLSLKQLKQAIQLLAETDYQIKTGYGGDKWLELELLLLKLAG 338 (340)
T ss_pred hCCCHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHhcc
Confidence 9999999999999999999999976 6999999999999985
No 82
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.95 E-value=4e-26 Score=260.55 Aligned_cols=292 Identities=21% Similarity=0.241 Sum_probs=231.8
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc-
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD- 474 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~- 474 (1342)
|+.+++.|..++.+|+++|+|||+||+|+||+++|..+++.+.|+.+ .+|+.|++|..+..+.|||+..+.
T Consensus 9 ~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~--------~~~~~c~~c~~~~~g~HPD~~~i~~ 80 (319)
T PRK08769 9 QQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHVLASGP--------DPAAAQRTRQLIAAGTHPDLQLVSF 80 (319)
T ss_pred HHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCC--------CCCCcchHHHHHhcCCCCCEEEEec
Confidence 67889999999999999999999999999999999999999999632 468889999999999999998884
Q ss_pred -cC-------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHH
Q psy13354 475 -AA-------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITV 546 (1342)
Q Consensus 475 -~~-------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L 546 (1342)
.. ...++++++++.+.+...|..+++||+|||++|.|+.++.|+|+|+||+||++++||+++++++++++||
T Consensus 81 ~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTI 160 (319)
T PRK08769 81 IPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATI 160 (319)
T ss_pred CCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHH
Confidence 22 1235889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcH
Q psy13354 547 LSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 547 ~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~ 626 (1342)
+|||+.+.|.+++.++..+||.+ .| +++..+..++..++|++..+...++.-.. +. .
T Consensus 161 rSRCq~i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~~~~~~~~--------~~---------r 217 (319)
T PRK08769 161 RSRCQRLEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQWLREDGL--------AL---------R 217 (319)
T ss_pred HhhheEeeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHHHhcCchH--------HH---------H
Confidence 99999999999999999999864 34 45666677889999999999877632100 00 0
Q ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHH
Q psy13354 627 KYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQL 706 (1342)
Q Consensus 627 ~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~ 706 (1342)
..+.+.+..+..+.. .++.+...+..... . ..+...+++++.++.. ...+ +++ ....|..
T Consensus 218 ~~~~~~l~~~~~~~~-~~~~~a~~~~~~~~--~---~~l~~~~~Dll~~~~~-~~~~-~~~------------~~~~L~~ 277 (319)
T PRK08769 218 RAVAQDLEQIASGRA-GAVDVAQRWTNDGQ--A---DQRLRHAADLALAQAS-AGLT-DPS------------RLHKLAT 277 (319)
T ss_pred HHHHHHHHHhccCcc-cHHHHHHHHccCCc--H---HHHHHHHHHHHHHhcC-Cccc-Chh------------hHHHHHH
Confidence 011122223333332 35555555544322 1 5788889999988873 2211 111 4566777
Q ss_pred HHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 707 FYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 707 ~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+...+.+....+..+.|+++.+|.+++....+
T Consensus 278 ~~~~l~~~~~~~~~~lN~~L~le~lll~~~~~ 309 (319)
T PRK08769 278 WFDAANRTRDLLRTTVRADLAVTELLLAWREG 309 (319)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHH
Confidence 77778888888888899999999999998764
No 83
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.95 E-value=1.9e-29 Score=283.82 Aligned_cols=255 Identities=18% Similarity=0.158 Sum_probs=197.8
Q ss_pred cCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcc--hHHHHHHHHHcCC
Q psy13354 821 LNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS--TTSLAKRLKELQL 897 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~--s~~l~~~l~~~g~ 897 (1342)
.||+|+.. +|.++..++ ....|.|.+|.++.||++||||| |.|+|.+|++|..| +..+++++.++-+
T Consensus 124 ~gV~i~~~~~v~~v~~~~-~~f~l~t~~g~~i~~d~lilAtG---------G~S~P~lGstg~gy~iA~~~G~~I~~~rp 193 (408)
T COG2081 124 LGVTIRTRSRVSSVEKDD-SGFRLDTSSGETVKCDSLILATG---------GKSWPKLGSTGFGYPIARQFGHTITPLRP 193 (408)
T ss_pred cCcEEEecceEEeEEecC-ceEEEEcCCCCEEEccEEEEecC---------CcCCCCCCCCchhhHHHHHcCCccccCcc
Confidence 78999555 799998766 56788999998999999999999 99999999987766 4445555554444
Q ss_pred CccccccCCC--cccccCcccccccee-------ecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccC
Q psy13354 898 SHGRLKTGTP--PRIDKRTIDFSKMEE-------QIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNS 968 (1342)
Q Consensus 898 ~~~~~~~~~~--~r~~~~si~~~~~~~-------~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~ 968 (1342)
.+++|....| -++.+.|++-..+.. +.|| ++|||||++||+++ |+|.|... .+.+.-....+|+.
T Consensus 194 alvpft~~~~~~~~l~gls~~~v~~~v~~~~g~~~~g~-~LfTh~GiSGPavl---~~Ss~~~~--~~~~~~~~i~iDll 267 (408)
T COG2081 194 ALVPFTLDESFLERLAGLSLKSVPLSVTAGKGITFQGD-LLFTHRGLSGPAVL---QLSSYWRL--LEKKGGATLSIDLL 267 (408)
T ss_pred ccCCccCCHHHHHHhcCCcccceEEEEecCCCceeecc-eEEEecCCcHHHHH---HHHHHHHH--hccCCCceEEEecC
Confidence 4444444433 355556655543333 4579 99999999999999 99999994 22222356778999
Q ss_pred CCCc-cccccccCCCCCCcccccccCCCCCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccc----------
Q psy13354 969 PIFS-GKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGM---------- 1037 (1342)
Q Consensus 969 p~~~-~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gl---------- 1037 (1342)
|.++ +++...--| .-.+|-+++..+...+..+.+..++...| ++....+++++++.++...|+.+
T Consensus 268 P~~~~~~l~~~l~~---~~~~kslkn~L~~~lp~rlv~~~l~~~~i-~~~~~~~ls~~~~~~l~~~ik~~~i~~~Gt~~~ 343 (408)
T COG2081 268 PDVDAEELLRELRR---ANPKKSLKNALAKLLPKRLVEFLLERAGI-PDEPLAQLSPKELAQLAAALKAWPITPNGTEPY 343 (408)
T ss_pred CCCCHHHHHHHHHh---hChhhHHHHHHHHHhhhHHHHHHHHhccC-CCcchhhcCHHHHHHHHHHHhcCeeeccCCccc
Confidence 9998 433211111 11133344444455666677778888888 89999999999999999999998
Q ss_pred cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------HHHHHHHHHHHHHHHh
Q psy13354 1038 KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------AASQGLLAGLNAALFS 1101 (1342)
Q Consensus 1038 e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A~~~G~~Ag~na~~~~ 1101 (1342)
++|+||.|||++++ |||+ |||+|.+|||||||||+|++|||+ |+|+|++||.+++.++
T Consensus 344 ~~A~VT~GGV~~~e--id~k----Tmesk~vPGLyf~GEvlDv~g~tGGYN~q~A~asG~~Ag~~~~~~~ 407 (408)
T COG2081 344 REAEVTAGGVDTKE--IDSK----TMESKKVPGLYFAGEVLDVTGWTGGYNFQWAWASGWAAGQGAAAWL 407 (408)
T ss_pred ceeEEecCceehhh--cCHH----HHHhhcCCCcEEEEEEEEeccCCCcHHHHHHHHHHHHHHHhhhhhc
Confidence 99999999999999 9999 999999999999999999999995 9999999999998653
No 84
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=99.95 E-value=9.5e-26 Score=268.43 Aligned_cols=324 Identities=15% Similarity=0.164 Sum_probs=250.1
Q ss_pred CceeeeecCC-C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHHH
Q psy13354 28 NNIELIASEN-Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n-~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~A 101 (1342)
+.|.+..|++ + .|+.+++++.+++.+.. . .|....+..+|++++++++.+.+|.+ ..+++++|+++|
T Consensus 29 ~vi~l~iG~Pd~~~p~~i~~a~~~a~~~~~------~-~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~a 101 (393)
T COG0436 29 DVIDLSIGEPDFPTPEHIIEAAIEALEEGG------T-HYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEA 101 (393)
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHHHhccc------C-CCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHH
Confidence 4688888875 3 44449999888875311 1 23367778899999999999998844 325666599999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+..++.++++|||+|+++++.| .++...+...|..+..+++... .+|.+|++.+++++++ +.+++++++|+||
T Consensus 102 l~~~~~a~~~pGDeVlip~P~Y---~~y~~~~~~~gg~~v~v~l~~~~~~f~~d~~~l~~~i~~-ktk~i~ln~P~NPTG 177 (393)
T COG0436 102 LFLAFLALLNPGDEVLIPDPGY---PSYEAAVKLAGGKPVPVPLDEEENGFKPDLEDLEAAITP-KTKAIILNSPNNPTG 177 (393)
T ss_pred HHHHHHHhcCCCCEEEEeCCCC---cCHHHHHHhcCCEEEEEeCCcCccCCcCCHHHHHhhcCc-cceEEEEeCCCCCcC
Confidence 9999999999999999777544 4555666778884444443333 4899999999999998 6677777777777
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----CcEEEecCCccCCCCCe---eEEEEe-chhH
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----ADFITSTTHKSLRGPRG---GFILMK-KKYK 246 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~Divv~S~sK~l~gp~G---G~iv~~-~~l~ 246 (1342)
+...+++|+++|++||++||+||+|....+.+..+.+.+.. ..+.+.||||.+ +++| ||++++ ++++
T Consensus 178 av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~-~mtGwRvG~~v~~~~~l~ 256 (393)
T COG0436 178 AVYSKEELKAIVELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTY-GMTGWRIGWVVGPPEELI 256 (393)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEecccccc-cccccceeEeecChHHHH
Confidence 33379999999999999999999998766644334444432 247789999999 8888 999999 7788
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~~~ 324 (1342)
+.+.. ...+...+++.+.+.|+..++..... ...+..++.+.++++.+.+.|.+.+ +.+..++.+++++|++++...
T Consensus 257 ~~~~~-~~~~~~~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~g~~~~~~p~Ga~Y~~~~i~~~~ 335 (393)
T COG0436 257 AALRK-LKSYLTSCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIGGLSVVKPPEGAFYLFPKIPELL 335 (393)
T ss_pred HHHHH-HHHhcccCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccCCCeeEEEEeecCCCC
Confidence 87774 34455556778888888877765421 3566677889999999999999865 887665778999999999877
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
++.+++..|++++||.+.|+..|+.+.+ .+++|++++...
T Consensus 336 d~~~f~~~Ll~~~gV~v~PG~~Fg~~~g---~~~vRis~~~~~ 375 (393)
T COG0436 336 DSEEFAKKLLEEAGVAVVPGSGFGEPPG---EGYVRLSLATSE 375 (393)
T ss_pred CHHHHHHHHHHhCCEEEecccccCCCCC---CCeEEEEEecCH
Confidence 7889999999999999999988887532 578999988764
No 85
>TIGR01128 holA DNA polymerase III, delta subunit. subunit around DNA forming a DNA sliding clamp.
Probab=99.94 E-value=9.9e-25 Score=253.84 Aligned_cols=265 Identities=15% Similarity=0.156 Sum_probs=234.8
Q ss_pred ccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-HHHHHHHHHhhcCCCCcEEEEEEeCCCCC---Ch
Q psy13354 468 MDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-HHAFNAMLKTLEEPPKYIKFILATTEPQK---IP 543 (1342)
Q Consensus 468 ~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-~~~~~~Ll~~Le~p~~~~vlIl~t~~~~k---l~ 543 (1342)
.++..+++.. .++.++.+.+.+.|+|+++|+|+|++++.+. ....+.|.++++++++++++|+.++..++ +.
T Consensus 19 ~~~~~~~~~e----~~~~~l~~~~~~~slf~~~kliii~~~~~~~~~~~~~~L~~~l~~~~~~~~~i~~~~~~~~~~~~~ 94 (302)
T TIGR01128 19 FNVFRIDGEE----FDWNQLLEEAQTLPLFSERRLVELRNPEGKPGAKGLKALEEYLANPPPDTLLLIEAPKLDKRKKLT 94 (302)
T ss_pred heeeeeccCC----CCHHHHHHHhhccCcccCCeEEEEECCCCCCCHHHHHHHHHHHhcCCCCEEEEEecCCCCHhHHHH
Confidence 3566666553 2456688999999999999999999999876 45679999999999999999998876553 22
Q ss_pred HHHhc--cEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC-CCCCHHHHHHH
Q psy13354 544 ITVLS--RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-EKITLNSMQEM 620 (1342)
Q Consensus 544 ~~L~s--R~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~-~~It~e~V~~~ 620 (1342)
+.+.. +|.++.|.+++..++..|+.+.++++|+.++++++++|++.++||++.+.++++|+..|++ +.||.++|+++
T Consensus 95 k~~~~~~~~~~i~~~~~~~~~~~~~i~~~~~~~g~~i~~~a~~~l~~~~~~d~~~l~~el~KL~~~~~~~~It~e~I~~~ 174 (302)
T TIGR01128 95 KWLKALKNAQIVECKTPKEQELPRWIQARLKKLGLRIDPDAVQLLAELVEGNLLAIAQELEKLALYAPDGKITLEDVEEA 174 (302)
T ss_pred HHHHHhcCeeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCcHHHHHHHHHHHHHhhCCCCCCCHHHHHHH
Confidence 34444 9999999999999999999999999999999999999999999999999999999999974 46999999999
Q ss_pred hccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc----------cCCchhHH
Q psy13354 621 LSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL----------IKDSPNYN 690 (1342)
Q Consensus 621 v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~----------~~~~~~~~ 690 (1342)
+....+.++|++++++..++...++.+++.+..+|++|..++..|.++||+++.++...+.+ ..+++..+
T Consensus 175 ~~~~~~~~if~l~dal~~~~~~~a~~~l~~l~~~~~~~~~il~~l~~~~~~L~~~k~~~~~~~~~~~i~~~~~~~~~~~~ 254 (302)
T TIGR01128 175 VSDSARFNVFDLTDALLEGKAARALRILKGLLGEGEEPLILLALLQRQLRLLLQLKRLAQQGGPLAQLASKLGIWPYRRK 254 (302)
T ss_pred HhhhhcCCHHHHHHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHcCCCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998654443 23455667
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHhhcc--CCChhHHHHHHHHHhH
Q psy13354 691 EIIQLSKKFNIEQIQLFYQISIHGRNELEL--APDEYAGFTMTLLRML 736 (1342)
Q Consensus 691 ~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~--~~~~~~~le~~ll~l~ 736 (1342)
.+.+++++||.++|.+++..|.++|..+|+ +.|++..+|.+++++|
T Consensus 255 ~~~~~~~~~s~~~L~~~l~~l~~~d~~~K~~~~~~~~~~le~~i~~~~ 302 (302)
T TIGR01128 255 LALKALRRLSLAKLEQALQELAEADLQLKGTGGGDPWLALERLLLKLA 302 (302)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHhC
Confidence 788999999999999999999999999994 5799999999999987
No 86
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.94 E-value=3.2e-29 Score=297.28 Aligned_cols=264 Identities=21% Similarity=0.232 Sum_probs=179.2
Q ss_pred HHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcc--hHHH
Q psy13354 812 AIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS--TTSL 888 (1342)
Q Consensus 812 ~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~--s~~l 888 (1342)
.+++.+++ .+++|+.+ +|.+|..+++.+.+|+++++..+.||+|||||| |.++|.+|++|++| +..+
T Consensus 114 ~L~~~l~~-~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG---------G~S~p~~GS~G~gy~~a~~l 183 (409)
T PF03486_consen 114 ALLEELKR-LGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG---------GKSYPKTGSDGSGYRIAKKL 183 (409)
T ss_dssp HHHHHHHH-HT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE-------------SSSGGGT-SSHHHHHHHHT
T ss_pred HHHHHHHH-cCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC---------CCCccccCCCcHHHHHHHHC
Confidence 33444433 68999655 799999999999999998888999999999999 99999999998887 6666
Q ss_pred HHHHHHcCCCccccccCCCc----ccccCcccc-------ccceeecCCCCCCCcccccCCCCCCCCccccchhhcchhH
Q psy13354 889 AKRLKELQLSHGRLKTGTPP----RIDKRTIDF-------SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKT 957 (1342)
Q Consensus 889 ~~~l~~~g~~~~~~~~~~~~----r~~~~si~~-------~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~ 957 (1342)
+|++.+.-+.++++++..++ .+.|-+++- .....+.|| ..|||+|+|||+++ ++|.|+.+... .
T Consensus 184 Gh~i~~~~PaL~~l~~~~~~~~~~~l~Gv~~~~~~~~~~~~~~~~~~Ge-llfT~~GiSGp~il---~lS~~~~~~l~-~ 258 (409)
T PF03486_consen 184 GHTITPPYPALVPLKCDEPWLFFKELSGVRLKAVISLLDGKKKASETGE-LLFTHYGISGPAIL---QLSRFIARALN-K 258 (409)
T ss_dssp T--EEEEEEES--EE--HHHHHTGGGTT-EEEEEEEEE-ECTCEEEEEE-EEE-SSEEESHHHH---HHTTTHHHHHH--
T ss_pred CCcEecCCCccCCeeecchhhhhhhhCCCceeeEEEEeccCCccceeee-EEEECCccchHHHH---HHHHHHHHHHH-h
Confidence 66666666666666666552 355555443 344558899 99999999999999 99999965432 2
Q ss_pred HHHHHhhcccCCCCc-cccccccCCCCCCcccccccCCCCCccceeEeeccccccee-ecCccccCCCHHHHHHHHHhcc
Q psy13354 958 HNIIRSEFKNSPIFS-GKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEY-YPNGISTSLPFEAQIELVQSID 1035 (1342)
Q Consensus 958 ~~~i~~~~~~~p~~~-~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~-~~~g~~~~l~~~~q~~~~~~i~ 1035 (1342)
+.-....+|+.|.++ ++++....+-..+..+|-++.......+-.|.+..+....+ .++....++++++..++++.|+
T Consensus 259 ~~~~~i~id~~p~~~~e~l~~~l~~~~~~~~~~~~~~~l~~~lp~rl~~~ll~~~~i~~~~~~~~~l~~~~~~~L~~~lk 338 (409)
T PF03486_consen 259 KKKVEISIDFLPDLSEEELEELLQERKEKNPKRTLKNFLKGLLPKRLALALLKRAGIKDPDKKVSELSKKERNRLANLLK 338 (409)
T ss_dssp -TTEEEEEESSTTS-HHHHHHHHHHHHHHTTTSBHHHHHTTTS-HHHHHHHHHHTTS-STTSBGGGS-HHHHHHHHHHHH
T ss_pred cCCceEEEEeCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHcCCCccccchhhcCHHHHHHHHHHHH
Confidence 233577899999998 33432221111111111111112223334466667777777 8888999999999999999998
Q ss_pred cc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------HHHHHHHHHHH
Q psy13354 1036 GM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------AASQGLLAGLN 1096 (1342)
Q Consensus 1036 gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A~~~G~~Ag~n 1096 (1342)
.+ ++|+||+||+++++ |||+ |||||.+||||||||++|++|.++ ||+||++||.|
T Consensus 339 ~~~~~v~g~~~~~~A~VT~GGV~~~e--id~~----TmeSk~~~gLyf~GEvLDvdG~~GGYNLq~AwsSG~~Ag~~ 409 (409)
T PF03486_consen 339 RFPFTVTGTGGFDKAQVTAGGVDLKE--IDPK----TMESKLVPGLYFAGEVLDVDGPCGGYNLQWAWSSGYLAGKY 409 (409)
T ss_dssp CEEEEESEE--TTT-SEEEEEE-GGG--B-TT----T-BBSSSTTEEE-GGGBSEEE-TTTHHHHHHHHHHHHHHH-
T ss_pred hCceeecccCCCceEEEECCCcCHHH--CCHh----hhcccCCCCeEEEEEEEEeccCcCchhHhHHHHHHHHhhCC
Confidence 87 99999999999999 9999 999999999999999999999885 99999999975
No 87
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=99.94 E-value=1.5e-24 Score=242.08 Aligned_cols=269 Identities=19% Similarity=0.217 Sum_probs=217.1
Q ss_pred hhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC
Q psy13354 398 HISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477 (1342)
Q Consensus 398 ~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~ 477 (1342)
..++.|.+++.+|+++|+|||+||+|+||+++|..+|+.+.|... ...|..+..+.|||+..+....
T Consensus 4 ~~~~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~-------------~~~c~~~~~~~HPD~~~i~p~~ 70 (290)
T PRK05917 4 AAWEALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLILKETS-------------PEAAYKISQKIHPDIHEFSPQG 70 (290)
T ss_pred HHHHHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCC-------------ccHHHHHhcCCCCCEEEEecCC
Confidence 457899999999999999999999999999999999999998521 1358899999999998885432
Q ss_pred ---CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEE
Q psy13354 478 ---TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFN 554 (1342)
Q Consensus 478 ---~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~ 554 (1342)
..++++++++.+.+...|+.+++||+||+++|.|+.+++|+|+|+||+||++++||++|++++++++||+|||+.+.
T Consensus 71 ~~~~I~idqiR~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRcq~~~ 150 (290)
T PRK05917 71 KGRLHSIETPRAIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRSLSIH 150 (290)
T ss_pred CCCcCcHHHHHHHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcceEEE
Confidence 24789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHH
Q psy13354 555 LKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILD 634 (1342)
Q Consensus 555 ~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~d 634 (1342)
|+++. + ..++++.+..++..++|++... .+.+++... .+
T Consensus 151 ~~~~~-------------~--~~i~~~~~~~l~~~~~g~~~~~--~~~~~l~~~-----------------~~------- 189 (290)
T PRK05917 151 IPMEE-------------K--TLVSKEDIAYLIGYAQGKESVT--EVGQIVKGS-----------------AD------- 189 (290)
T ss_pred ccchh-------------c--cCCCHHHHHHHHHHhCCChhHH--HHHHHHhcc-----------------hH-------
Confidence 98861 1 1378889999999999999611 111111000 00
Q ss_pred HHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cCCchhHHHHHHHHhcCCHHHHHHHHHHHHH
Q psy13354 635 ALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IKDSPNYNEIIQLSKKFNIEQIQLFYQISIH 713 (1342)
Q Consensus 635 al~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~ 713 (1342)
...... ++....+|..+...||+++..+...+.. ..+.+....+.+ ++...+..+++.+.+
T Consensus 190 --------~~~~~~------re~~~~~L~~ll~~~RD~l~~~~~~~~~~l~~~d~~~~l~~----~~~~~l~~~i~~i~~ 251 (290)
T PRK05917 190 --------TDKQVL------RDKTKAMLEVLLQLFRDRFLLALKVPASALAYPDLLKEILT----LPVLPLEKVLSIIER 251 (290)
T ss_pred --------HHHHHH------HHHHHHHHHHHHHHHHHHHHHHcCCchhhhccHHHHHHHHh----cccccHHHHHHHHHH
Confidence 000000 3334678899999999999888765543 445555555544 345558899999999
Q ss_pred HHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 714 GRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 714 ~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+.+.++...++++.+|.+++++..+
T Consensus 252 a~~~l~~N~N~~l~le~l~l~l~~~ 276 (290)
T PRK05917 252 AVQALDNSSSAPSCLEWVALQLWSL 276 (290)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865
No 88
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=8.8e-24 Score=237.09 Aligned_cols=281 Identities=21% Similarity=0.311 Sum_probs=209.2
Q ss_pred cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc
Q psy13354 395 GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD 474 (1342)
Q Consensus 395 Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~ 474 (1342)
.|..+++.|.+++.+++++|+|||+|| .||+++|+.+|+.+.|.... ...+|+.|.+|..+..+.|||+..+.
T Consensus 6 ~q~~~~~~L~~~~~~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~-----~~~~Cg~C~~C~~i~~~~HPD~~~i~ 78 (290)
T PRK07276 6 KQPKVFQRFQTILEQDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKE-----GVLPCGHCRSCRLIEQGEFSDVTVIE 78 (290)
T ss_pred HHHHHHHHHHHHHHcCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCC-----CCCCCCCCHHHHHHhcCCCCCeeeec
Confidence 578899999999999999999999996 68999999999999997532 23589999999999999999999987
Q ss_pred cC-CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEE
Q psy13354 475 AA-STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553 (1342)
Q Consensus 475 ~~-~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i 553 (1342)
.. ...+++++++++..+...|..+.+||+|||++|.|+.++.|+|||+||+||++++||++|++++++++||+|||+.+
T Consensus 79 p~~~~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRcq~i 158 (290)
T PRK07276 79 PQGQVIKTDTIRELVKNFSQSGYEGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRTQIF 158 (290)
T ss_pred CCCCcCCHHHHHHHHHHHhhCcccCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcceee
Confidence 64 33578999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQIL 633 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~ 633 (1342)
.|++ +.+++.+|+. ++|+ +.+..+.++..+ |++..++..++.-- ..+ ....+..+.
T Consensus 159 ~f~~-~~~~~~~~L~----~~g~--~~~~a~~la~~~-~s~~~A~~l~~~~~-----------~~~-----~~~~~~~~~ 214 (290)
T PRK07276 159 HFPK-NEAYLIQLLE----QKGL--LKTQAELLAKLA-QSTSEAEKLAQNKK-----------FLE-----LIDQAERFV 214 (290)
T ss_pred eCCC-cHHHHHHHHH----HcCC--ChHHHHHHHHHC-CCHHHHHHHhCChh-----------HHH-----HHHHHHHHH
Confidence 9977 7777777764 4564 455556666555 57888887752100 000 011122333
Q ss_pred HHHHccChHHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHH
Q psy13354 634 DALAEQDGNLILSIANKIEIYNLS---YSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQI 710 (1342)
Q Consensus 634 dal~~~~~~~al~~l~~L~~~~~~---~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~ 710 (1342)
+.+...+...++.. .++.....+ -..++..|..++..- ++.+++...+..
T Consensus 215 ~~l~~~~~~~~l~~-~~l~~~~~~~e~q~~~l~~l~~~~~~~--------------------------~~~~~~~~~L~~ 267 (290)
T PRK07276 215 TILLKDKDEAYLQV-ARLVQLADEKEEQDQVLTLLTLLLAQE--------------------------RMQVNVRTQLEA 267 (290)
T ss_pred HHhccChHHHHHHH-HHHHHhhhcHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHH
Confidence 33333332322222 333333222 233444444333111 112445666888
Q ss_pred HHHHHHhhccCCChhHHHHHHHH
Q psy13354 711 SIHGRNELELAPDEYAGFTMTLL 733 (1342)
Q Consensus 711 l~~~d~~lK~~~~~~~~le~~ll 733 (1342)
..+.+.......+....+|.+++
T Consensus 268 ~~~~r~~w~~Nv~~~~~le~l~l 290 (290)
T PRK07276 268 VYQARKMWQSNVSFQNALEYMVL 290 (290)
T ss_pred HHhHHHHHHhccCHHHHHHHHhC
Confidence 88888888888889999998764
No 89
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.93 E-value=1.2e-23 Score=253.33 Aligned_cols=255 Identities=26% Similarity=0.386 Sum_probs=212.5
Q ss_pred HHhhccCCCCccccccchhhHHH---HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKS---LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~---L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
+|++||||++|++++||++++.. |.+.+..+..++ ++|+||+|+|||++|+.+++.+.+
T Consensus 1 pla~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~~~~~~-ilL~GppGtGKTtLA~~ia~~~~~----------------- 62 (413)
T PRK13342 1 PLAERMRPKTLDEVVGQEHLLGPGKPLRRMIEAGRLSS-MILWGPPGTGKTTLARIIAGATDA----------------- 62 (413)
T ss_pred ChhhhhCCCCHHHhcCcHHHhCcchHHHHHHHcCCCce-EEEECCCCCCHHHHHHHHHHHhCC-----------------
Confidence 58999999999999999999876 999998887765 789999999999999999998752
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
++..+++. ..++++++++++.+......+++++|+|||+|.++...++.|++++++ ..+++|.++
T Consensus 63 ------------~~~~l~a~-~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~--~~iilI~at 127 (413)
T PRK13342 63 ------------PFEALSAV-TSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVED--GTITLIGAT 127 (413)
T ss_pred ------------CEEEEecc-cccHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhhc--CcEEEEEeC
Confidence 46667665 345678888888876655556788999999999999999999999997 356667666
Q ss_pred CCC--CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhc--CC-CcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC
Q psy13354 537 TEP--QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE--NI-KFETSALNLIATGAQGSMRDALSLTDQAINYSSEK 611 (1342)
Q Consensus 537 ~~~--~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~--g~-~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~ 611 (1342)
+.. ..+.++|.|||.++.|.+++.+++..|+.+.+... ++ .+++++++.+++.++||+|.+++.++.+... ...
T Consensus 128 t~n~~~~l~~aL~SR~~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~Gd~R~aln~Le~~~~~-~~~ 206 (413)
T PRK13342 128 TENPSFEVNPALLSRAQVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANGDARRALNLLELAALG-VDS 206 (413)
T ss_pred CCChhhhccHHHhccceeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCC
Confidence 543 36788999999999999999999999999988763 54 8999999999999999999999999998776 667
Q ss_pred CCHHHHHHHhccCc------HHHHHHHH----HHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy13354 612 ITLNSMQEMLSIID------QKYLIQIL----DALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLL 668 (1342)
Q Consensus 612 It~e~V~~~v~~~~------~~~if~l~----dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~ 668 (1342)
|+.+++.+++.... .+..++++ +++...|.+.++.++..|+..|++|..|...|...
T Consensus 207 It~~~v~~~~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~ 273 (413)
T PRK13342 207 ITLELLEEALQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVII 273 (413)
T ss_pred CCHHHHHHHHhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 99999999987421 12344544 45555899999999999999999999887766553
No 90
>PF13932 GIDA_assoc_3: GidA associated domain 3; PDB: 3CES_C 3CP2_A 3G05_A 3CP8_A 2ZXI_B 2ZXH_A.
Probab=99.93 E-value=1.6e-26 Score=202.50 Aligned_cols=72 Identities=60% Similarity=0.955 Sum_probs=62.7
Q ss_pred hhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCCCCCHHHHHHHHH
Q psy13354 1258 LQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLI 1329 (1342)
Q Consensus 1258 ~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~Gv~p~~i~~l~~ 1329 (1342)
+||+|||+||++++++++++|+++||+||||++|+|||+|+||||+++||.|||||+||||||||||..|++
T Consensus 1 iKY~~Yi~rq~~~i~~~~~~e~~~iP~~~dy~~i~~LS~E~~ekL~~~rP~Ti~~A~rI~GvtPa~i~~Llv 72 (72)
T PF13932_consen 1 IKYEGYIERQQQEIERLRKDESLKIPEDFDYSKIPGLSNEAREKLEKIRPRTIGQASRIPGVTPAAISLLLV 72 (72)
T ss_dssp HHTHHHHHHHHHHCHHHHHHHTSB--TTS-CCCSTT--CHHHHHHHHH--SCHHHHTTSTTS-HHHHHHHHC
T ss_pred CCcHHHHHHHHHHHHHHHHHhCCCCcCCCChhhccccHHHHHHHHHhcCCCCHHHHHhCCCCCHHHHHHHhC
Confidence 699999999999999999999999999999999999999999999999999999999999999999999984
No 91
>KOG0257|consensus
Probab=99.93 E-value=3.6e-24 Score=240.26 Aligned_cols=335 Identities=16% Similarity=0.150 Sum_probs=245.0
Q ss_pred ccccccccchHHHHHHHHHHHhccCceeeeecC-CCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHH
Q psy13354 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASE-NYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINR 81 (1342)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~-n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~ 81 (1342)
.+.+|+...|.++-.+..........-.|..|. ++.+|. +.+++.+.+.+. ....|+.+.++.+|.+.+++.
T Consensus 8 ~~~~l~~~~~~vw~e~~~la~e~~~~~~LgqGfp~~~~P~fv~ea~~~~~~~~------~~~qYt~~~G~p~L~~aL~k~ 81 (420)
T KOG0257|consen 8 RNRNLSTSKPYVWTEINRLAAEHKVPNPLGQGFPDFPPPKFVTEAAKNAAKEP------STNQYTRGYGLPQLRKALAKA 81 (420)
T ss_pred ccccccccCCcHHHHHHHHHHhcCCCCcccCCCCCCCCcHHHHHHHHHHhccc------hhccccccCCchHHHHHHHHH
Confidence 356777777888888765544333222266664 555555 888888776421 223455566677888989999
Q ss_pred HHHHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec------CCCCC
Q psy13354 82 LKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG------LNKKE 151 (1342)
Q Consensus 82 la~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~------~~~~~ 151 (1342)
++.++|.. +.++++.++.+|+..++++++++||+|++..+.+.++ .....+.|....+++.. ...+|
T Consensus 82 ~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l~~~GDeVii~eP~fd~Y---~~~~~maG~tpv~v~~~~~~g~~~s~~~ 158 (420)
T KOG0257|consen 82 YSEFYGGLLDPDDEVLVTAGANEAISSALLGLLNPGDEVIVFEPFFDCY---IPQVVMAGGTPVFVPLKPKEGNVSSSDW 158 (420)
T ss_pred HHHHhccccCCcccEEEecCchHHHHHHHHHHcCCCCEEEEecCcchhh---hhHHhhcCCcceeeccccccccccCccc
Confidence 99988754 5555665888999999999999999999877655554 44556667655566554 34679
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----Cc
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----AD 221 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~D 221 (1342)
.+|.++++.++++. +++|+++.|+|| +...|++|+++|++||+++|+||+|....+.+..+...... ..
T Consensus 159 ~~D~~~le~~~t~k-Tk~Ii~ntPhNPtGkvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ert 237 (420)
T KOG0257|consen 159 TLDPEELESKITEK-TKAIILNTPHNPTGKVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERT 237 (420)
T ss_pred cCChHHHHhhccCC-ccEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheE
Confidence 99999999999975 566666666666 44479999999999999999999999877766555543332 45
Q ss_pred EEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhcc-------chHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK-------PDFKIYQKQVVKN 291 (1342)
Q Consensus 222 ivv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~-------~~~~~~~~~l~~~ 291 (1342)
+-++|++|+| |.+| ||+++++.+...+........+.++ ++.+.|.+.++...+. .....+.+.++++
T Consensus 238 itvgS~gKtf-~~TGWrlGW~igp~~L~~~~~~vh~~~~~~~~-Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~k 315 (420)
T KOG0257|consen 238 ITVGSFGKTF-GVTGWRLGWAIGPKHLYSALFPVHQNFVFTCP-TPIQEASAAAFALELACLQPGGSYFITELVKEYKEK 315 (420)
T ss_pred EEecccccee-eeeeeeeeeeechHHhhhhHHHHhhccccccC-cHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHH
Confidence 7899999999 8999 9999988888887765444444433 5666666655544431 2344588999999
Q ss_pred HHHHHHHHHhCCcEEeeCCCCCeEEEEEcc--------C----CCCCHHHHHHHHHHCCceeeeccCCCCCC
Q psy13354 292 AKILSKILDQRGIRIVSGGTKSHIILVDLR--------N----KKITGKIAESILESANIICNKNSIPNDPE 351 (1342)
Q Consensus 292 a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~--------~----~~~~~~~~~~ll~~~GI~v~~~~~p~~~~ 351 (1342)
++.+.+.|.+.|+++. .|.+++++|++++ + ...+..+...++++.|+.+-|.+.++...
T Consensus 316 rdil~k~L~~lg~~v~-~p~gayyl~adfs~~~~~~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~ 386 (420)
T KOG0257|consen 316 RDILAKALEELGLKVT-GPEGAYYLWADFSLAKSWPFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSRE 386 (420)
T ss_pred HHHHHHHHHhcCCccc-cCCCceEEEEeccccccCCcchhhccCCCceeeehhhhccCcEEEeCchhcCCch
Confidence 9999999999999975 4788999999997 1 12345678899999999999887777643
No 92
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=99.93 E-value=2.3e-23 Score=236.19 Aligned_cols=292 Identities=19% Similarity=0.220 Sum_probs=223.1
Q ss_pred hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCc-cEEEEcc
Q psy13354 397 NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFM-DYIEMDA 475 (1342)
Q Consensus 397 ~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~-d~~~i~~ 475 (1342)
+.+++.+.+++++|+++|+|||+|++|+||+++++.+++.+.|..... +..+.|+ ++..++.
T Consensus 2 ~~~~~~l~~~i~~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~-----------------~~~~~~p~n~~~~d~ 64 (299)
T PRK07132 2 NNWIKFLDNSATQNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITN-----------------LNEQELPANIILFDI 64 (299)
T ss_pred chHHHHHHHHHHhCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCC-----------------CCCCCCCcceEEecc
Confidence 467889999999999999999999999999999999999999853211 1223355 5666652
Q ss_pred -CCCcCHHHHHHHHHHHhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEE
Q psy13354 476 -ASTRGINEMAQLLEQTIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553 (1342)
Q Consensus 476 -~~~~~~~~i~~ii~~~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i 553 (1342)
....++++++++++.+...|+. +++||+|||+++.++.++.|+|+++||+||++++||+++++++++++||+|||+++
T Consensus 65 ~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc~~~ 144 (299)
T PRK07132 65 FDKDLSKSEFLSAINKLYFSSFVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRCQVF 144 (299)
T ss_pred CCCcCCHHHHHHHHHHhccCCcccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCeEEE
Confidence 2345678899988888888866 69999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQIL 633 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~ 633 (1342)
+|.+++++++.+||.+. + ++++....++..++ ++..++..+..- ..+..+ .+.+++
T Consensus 145 ~f~~l~~~~l~~~l~~~----~--~~~~~a~~~a~~~~-~~~~a~~~~~~~--------~~~~~~---------~~~~~l 200 (299)
T PRK07132 145 NVKEPDQQKILAKLLSK----N--KEKEYNWFYAYIFS-NFEQAEKYINKE--------SENLLK---------KFEEAL 200 (299)
T ss_pred ECCCCCHHHHHHHHHHc----C--CChhHHHHHHHHcC-CHHHHHHHHhcC--------CHHHHH---------HHHHHH
Confidence 99999999999998642 3 67777888887777 599888775321 111111 122333
Q ss_pred HHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc-cCCchhHHHHHHHHhcCCHHHHHHHHHHHH
Q psy13354 634 DALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL-IKDSPNYNEIIQLSKKFNIEQIQLFYQISI 712 (1342)
Q Consensus 634 dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~-~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~ 712 (1342)
..+.. +....+...+.... ++....++..+..++|+++..+...... ..+. ...+.+++ +|..+| ++.+.
T Consensus 201 ~~~~~-~~~~l~~~~~~~~~-ke~~~~ll~~l~~~~rd~l~~~~~~~~~~i~~~--~~~i~~~~--~s~~~l---i~~i~ 271 (299)
T PRK07132 201 NKSLK-EKYELILFLNKKLT-KENALFLLKLLKFFFKSIFANKKKKNPKNIKVA--FSKKKKFK--IEFFEL---ITIID 271 (299)
T ss_pred HHhhh-hHHHHHHHHHhhcC-hhhHHHHHHHHHHHHHHHHHHhccCChHhHhhH--HHHHHHHh--cCHHHH---HHHHH
Confidence 33322 22223333333333 5566778999999999999888754432 2222 45666666 788777 88889
Q ss_pred HHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 713 HGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 713 ~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
++...++...|+++++|.+++++..+
T Consensus 272 ~~~~~L~~N~N~~l~~e~lll~l~e~ 297 (299)
T PRK07132 272 EFLNSLETNENFNLQKQAFLVKIYEI 297 (299)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 99999999999999999999998653
No 93
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.92 E-value=1.3e-24 Score=234.13 Aligned_cols=186 Identities=33% Similarity=0.523 Sum_probs=170.0
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC-CCc
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA-STR 479 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~-~~~ 479 (1342)
+.|.+.+++++++|+|||+||+|+|||++++.+++.+.|... ....+|+.|.+|..+..+.++|+..+... ...
T Consensus 2 ~~l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~-----~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~ 76 (188)
T TIGR00678 2 QQLKRALEKGRLAHAYLFAGPEGVGKELLALALAKALLCEQP-----GGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSI 76 (188)
T ss_pred hHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCC-----CCCCCCCCCHHHHHHHcCCCCcEEEeccccCcC
Confidence 568899999999999999999999999999999999998632 23468999999999999999998877654 245
Q ss_pred CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCC
Q psy13354 480 GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559 (1342)
Q Consensus 480 ~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~ 559 (1342)
++++++++++.+...|++++++||||||+|.++.+.++.|++++|+|+++++||++++++.++.++++|||.+++|.+++
T Consensus 77 ~~~~i~~i~~~~~~~~~~~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~~~~~~~~~~ 156 (188)
T TIGR00678 77 KVDQVRELVEFLSRTPQESGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRCQVLPFPPLS 156 (188)
T ss_pred CHHHHHHHHHHHccCcccCCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhcEEeeCCCCC
Confidence 67899999999999999999999999999999999999999999999999999999998899999999999999999999
Q ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHH
Q psy13354 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597 (1342)
Q Consensus 560 ~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a 597 (1342)
.+++.+||.+. | +++++++++++.++||+|.+
T Consensus 157 ~~~~~~~l~~~----g--i~~~~~~~i~~~~~g~~r~~ 188 (188)
T TIGR00678 157 EEALLQWLIRQ----G--ISEEAAELLLALAGGSPGAA 188 (188)
T ss_pred HHHHHHHHHHc----C--CCHHHHHHHHHHcCCCcccC
Confidence 99999999875 4 78999999999999999864
No 94
>PLN02955 8-amino-7-oxononanoate synthase
Probab=99.92 E-value=9.6e-24 Score=250.57 Aligned_cols=313 Identities=23% Similarity=0.261 Sum_probs=238.3
Q ss_pred ceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+..++++||++.. ++++..+++. +|+.+..+++.+.+ ...+.++|+ .+++++|.+.+++++ +|+.|+.
T Consensus 103 ~~l~FsSndYLGL~~~p~v~~a~~~ai~-~yG~g~~gSrl~~G~~~~h~~LE~----~LA~f~g~e~all~s-SGy~AN~ 176 (476)
T PLN02955 103 KLLLFSGNDYLGLSSHPTISNAAANAAK-EYGMGPKGSALICGYTTYHRLLES----SLADLKKKEDCLVCP-TGFAANM 176 (476)
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHH-HcCCCCCCcCccccChHHHHHHHH----HHHHHHCCCcEEEEC-ChHHHHH
Confidence 56689999999987 8999888885 78878777777654 566667777 999999999999999 9999999
Q ss_pred HHHHHcc--------------CCCCEEEEeeccCCccchhhHHhhhCC--ceeEEEEecCCCCCCCCHHHHHHHHHhcC-
Q psy13354 104 AVFFSVL--------------NPGDTIMGMSLQEGGHLTHGMMLNMSG--KWFNSICYGLNKKEKIDYKKVEYLAKKNK- 166 (1342)
Q Consensus 104 ~al~al~--------------~pGD~Vlv~~~~~~~~~s~~~~~~~~g--~~~~~v~~~~~~~~~id~e~Le~~i~~~~- 166 (1342)
.++.++. +.+|.|+.- ...|.+....++... .+..++.++++ |+++++++++..+
T Consensus 177 ~~i~aL~~~~~~~~~~~~~~~~~~d~i~~D---~~~HaSI~dG~~ls~~~~~a~~~~f~HN-----D~~~Le~~L~~~~~ 248 (476)
T PLN02955 177 AAMVAIGSVASLLAASGKPLKNEKVAIFSD---ALNHASIIDGVRLAERQGNVEVFVYRHC-----DMYHLNSLLSSCKM 248 (476)
T ss_pred HHHHHHhhccccccccccccCCCCcEEEEe---ccchHHHHHHHHhccccCCceEEEeCCC-----CHHHHHHHHHhCCC
Confidence 9999873 345566633 344555444443331 12356667777 9999999886533
Q ss_pred -CeEEEEcCCCCC---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCCCCCCCcEEEecCCccCCCCCee
Q psy13354 167 -PKLIIAGASAYS---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGG 237 (1342)
Q Consensus 167 -~~liv~~~s~~~---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~~l~~~Divv~S~sK~l~gp~GG 237 (1342)
..+|+ ..+.++ ...|+++|.++|++||++||+||||+.|.++.. .+.+..+..|++++|++|++ |..||
T Consensus 249 ~~~~Vv-~EgV~SmdGdiapL~eL~~L~~~~ga~LiVDEAH~~Gv~G~~G~G~~e~~g~~~di~ii~~TLsKA~-G~~GG 326 (476)
T PLN02955 249 KRKVVV-TDSLFSMDGDFAPMEELSQLRKKYGFLLVIDDAHGTFVCGENGGGVAEEFNCEADVDLCVGTLSKAA-GCHGG 326 (476)
T ss_pred CceEEE-EeCCCCCCCCcCCHHHHHHHHHHcCcEEEEcccccCceecCCCCcHHHHhCCCCCCcEEEEeCccch-hccCc
Confidence 34444 455555 566999999999999999999999998887651 12222345689999999999 88899
Q ss_pred EEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 238 FILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 238 ~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
|+++++++++.++....++.++++..+..++++.+..+..... ...++++.++.+++++. .|+.+ .+++++
T Consensus 327 fi~gs~~~~~~l~~~~~~~ifStalpp~~aaa~laal~l~~~~-~~~r~~L~~n~~~fr~~---~G~~~-----~sPI~p 397 (476)
T PLN02955 327 FIACSKKWKQLIQSRGRSFIFSTAIPVPMAAAAYAAVVVARKE-KWRRKAIWERVKEFKAL---SGVDI-----SSPIIS 397 (476)
T ss_pred eeecHHHHHHHHHHhCCCCeecccccHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHh---cCCCC-----CCCEEE
Confidence 9999999999999888888888888877777776666665323 34678899999999874 36543 378888
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.+.......++.+.|+++ ||++.+..+|.+|.+ ..++|+++++.|+.+
T Consensus 398 I~ig~~~~a~~~~~~L~~~-Gi~v~~i~yPtVP~g---~~rLRi~lsA~Ht~e 446 (476)
T PLN02955 398 LVVGNQEKALKASRYLLKS-GFHVMAIRPPTVPPN---SCRLRVTLSAAHTTE 446 (476)
T ss_pred EEeCCHHHHHHHHHHHHHC-CCEEEEECCCCCCCC---CceEEEeeCCCCCHH
Confidence 8887766555667777665 999999999999876 678999999998854
No 95
>COG1466 HolA DNA polymerase III, delta subunit [DNA replication, recombination, and repair]
Probab=99.92 E-value=2.8e-23 Score=242.93 Aligned_cols=310 Identities=14% Similarity=0.145 Sum_probs=256.6
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG 480 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~ 480 (1342)
..+...+.++...++|++||++-.-....+..+.+...++.. ++..... ...
T Consensus 4 ~~~~~~l~~~~~~~v~ll~G~d~~l~~e~~~~i~~~~~~~~~--------------------------~~~~~~~--~~~ 55 (334)
T COG1466 4 EELAKHLKKKNLMPVYLLYGEDEGLLEEAADAILKRALADGF--------------------------DENYSFF--DDS 55 (334)
T ss_pred HHHHHHHhcCCCccEEEEecCChhHHHHHHHHHHHHHhccch--------------------------hhHHhhc--ccc
Confidence 345667777778999999999999888888888887763211 1111111 111
Q ss_pred HHHHHHHHHHHhhcCccCCceEEEeccCccCC-HHHHHHHHHhhcCCC-CcEEEEEEeCCCCC---ChHHHhcc--EEEE
Q psy13354 481 INEMAQLLEQTIYAPINARYKIYVIDEVHMLT-HHAFNAMLKTLEEPP-KYIKFILATTEPQK---IPITVLSR--CIQF 553 (1342)
Q Consensus 481 ~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-~~~~~~Ll~~Le~p~-~~~vlIl~t~~~~k---l~~~L~sR--~~~i 553 (1342)
..++..+++.+.+.|+|+++++++|+.++... .+....+......+| ..+++++..++.++ ..+.+.+- +.++
T Consensus 56 ~~~~~~~~~~~~s~~lF~~~~~v~l~~~~~~~~~~~~~~l~~~~~~~p~~~~~l~~~~~kl~~~~~~~k~~~~~~~~~~~ 135 (334)
T COG1466 56 ELDWADLLSELESPSLFGEKRLVVLKNAEKKPNKDKNLALLELAALLPSTDLLLLVESNKLDKAKKLTKWLKKLAKAVVV 135 (334)
T ss_pred cCCHHHHHHHhhccccccCCeeEEEECCCCCcCchhHHHHHHHHcCCCCCCEEEEEecCCcchHHHHHHHHHHhccCceE
Confidence 14688999999999999999999999999764 555566667777777 77777777766553 33344333 5699
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCC-CCCHHHHHHHhccCcHHHHHHH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE-KITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~-~It~e~V~~~v~~~~~~~if~l 632 (1342)
.|.+++..++.+|+..++++.|++++++++++|+...+||++.+.++++|+..|..+ .||.++|+++++...+.++|++
T Consensus 136 ~~~~~~~~~l~~~i~~~~~~~~l~i~~~a~~~L~~~~~~nl~~i~~Ei~KL~l~~~~~~I~~~~V~~~v~~~~~~~~f~l 215 (334)
T COG1466 136 ECKPLDEAELPQWIKKRAKELGLKIDQEAIQLLLEALGGNLLAIAQEIEKLALYAGDKEITLEDVEEVVSDVAEFNIFDL 215 (334)
T ss_pred ecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCCcHHHHHHHHHHHHHhCCCCcCCHHHHHHHHhccccCCHHHH
Confidence 999999999999999999999999999999999999999999999999999999865 6999999999999999999999
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHH----------HHHHHhcCCHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNE----------IIQLSKKFNIE 702 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~----------~~~~a~~~s~~ 702 (1342)
+|++..||..+|++++++|..+|++|+.|++.|+++|+.+++++...++|......++. +.++.+++|.+
T Consensus 216 ~dail~g~~~~a~~~l~~L~~~ge~p~~il~~l~~~f~~~~~l~~~~~~g~~~~~~~~~l~~~~~~~~~~~~~~~r~s~~ 295 (334)
T COG1466 216 ADALLKGDVKKALRLLRDLLLEGEEPLKLLAALTRQFRLLLQLKALAEKGKSLQQAAKSLGIPYRRKKLFKKAARRLSLK 295 (334)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHcCcCHHHHHHHhcCcHHHHHHHHHHHHHcCHH
Confidence 99999999999999999999999999999999999999999998877776654444433 34566669999
Q ss_pred HHHHHHHHHHHHHHhhccC-CChhHHHHHHHHHhHcc
Q psy13354 703 QIQLFYQISIHGRNELELA-PDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 703 ~L~~~l~~l~~~d~~lK~~-~~~~~~le~~ll~l~~~ 738 (1342)
+|.++++.|.++|..+|++ .|+...++.++++++..
T Consensus 296 ~l~~~l~~l~~~d~~~K~~~~d~~~~l~~~l~~~~~~ 332 (334)
T COG1466 296 QLLKALRLLAQLDYQIKTGYGDPVWALELFLLRLLEL 332 (334)
T ss_pred HHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHhhc
Confidence 9999999999999999976 58999999999998753
No 96
>PRK04195 replication factor C large subunit; Provisional
Probab=99.92 E-value=6.5e-24 Score=260.54 Aligned_cols=256 Identities=21% Similarity=0.341 Sum_probs=214.9
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHH---cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALD---KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~---~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+.|..||+|++|++++||+.+++.|..++. .|..++++|||||||+|||++|+++++.++
T Consensus 2 ~~W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~----------------- 64 (482)
T PRK04195 2 MPWVEKYRPKTLSDVVGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYG----------------- 64 (482)
T ss_pred CCchhhcCCCCHHHhcCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcC-----------------
Confidence 368999999999999999999999998886 566678899999999999999999999986
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhh-cCccC-CceEEEeccCccCCH----HHHHHHHHhhcCCCCc
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY-APINA-RYKIYVIDEVHMLTH----HAFNAMLKTLEEPPKY 529 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~-~p~~~-~~rvviIDE~~~L~~----~~~~~Ll~~Le~p~~~ 529 (1342)
.++++++++.....+.++.++..... .++++ +++||||||+|.++. ...++|+++++.+.
T Consensus 65 ------------~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~~~-- 130 (482)
T PRK04195 65 ------------WEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNEDRGGARAILELIKKAK-- 130 (482)
T ss_pred ------------CCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccchhHHHHHHHHHHcCC--
Confidence 25788888777767777777765544 46665 789999999999965 56889999999654
Q ss_pred EEEEEEeCCCCCChH-HHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy13354 530 IKFILATTEPQKIPI-TVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS 608 (1342)
Q Consensus 530 ~vlIl~t~~~~kl~~-~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~ 608 (1342)
..+|+++|.+..+.+ +|++||..++|++++.+++..+|..+++++|+.+++++++.|++.++||+|.+++.|+.+ ...
T Consensus 131 ~~iIli~n~~~~~~~k~Lrsr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR~ain~Lq~~-a~~ 209 (482)
T PRK04195 131 QPIILTANDPYDPSLRELRNACLMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLRSAINDLQAI-AEG 209 (482)
T ss_pred CCEEEeccCccccchhhHhccceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHH-hcC
Confidence 346778888877766 899999999999999999999999999999999999999999999999999999999872 233
Q ss_pred CCCCCHHHHHHHhccCcHHHHHHHHHHHHc-cChHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Q psy13354 609 SEKITLNSMQEMLSIIDQKYLIQILDALAE-QDGNLILSIANKIEIYNLSYSIVLKDLSLLL 669 (1342)
Q Consensus 609 ~~~It~e~V~~~v~~~~~~~if~l~dal~~-~~~~~al~~l~~L~~~~~~~~~il~~L~~~~ 669 (1342)
.+.|+.++|+.++....+.++|++++++.. ++...++..+.+ ...+|..++..|...+
T Consensus 210 ~~~it~~~v~~~~~~d~~~~if~~l~~i~~~k~~~~a~~~~~~---~~~~~~~i~~~l~en~ 268 (482)
T PRK04195 210 YGKLTLEDVKTLGRRDREESIFDALDAVFKARNADQALEASYD---VDEDPDDLIEWIDENI 268 (482)
T ss_pred CCCCcHHHHHHhhcCCCCCCHHHHHHHHHCCCCHHHHHHHHHc---ccCCHHHHHHHHHhcc
Confidence 456999999999888888899999999987 677777665543 4567777766665544
No 97
>PRK04132 replication factor C small subunit; Provisional
Probab=99.91 E-value=1.3e-22 Score=254.77 Aligned_cols=273 Identities=22% Similarity=0.249 Sum_probs=237.4
Q ss_pred EEEEc--cCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh-
Q psy13354 416 YLFTG--TRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI- 492 (1342)
Q Consensus 416 ~Ll~G--~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~- 492 (1342)
.+..| |.+.||||+|+++|+.+.+.+ ...+++++|+++..+++++++++..+.
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~------------------------~~~~~lElNASd~rgid~IR~iIk~~a~ 622 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGEN------------------------WRHNFLELNASDERGINVIREKVKEFAR 622 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhccc------------------------ccCeEEEEeCCCcccHHHHHHHHHHHHh
Confidence 46668 888999999999999986421 114699999999899999999997654
Q ss_pred hcCccC-CceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHH
Q psy13354 493 YAPINA-RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYIL 571 (1342)
Q Consensus 493 ~~p~~~-~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~ 571 (1342)
..|+.+ +++||||||+|.|+.+++++|++++|+|+.++.||++||.+.++.++|+|||+.+.|.+++.+++...|..++
T Consensus 623 ~~~~~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC~~i~F~~ls~~~i~~~L~~I~ 702 (846)
T PRK04132 623 TKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIA 702 (846)
T ss_pred cCCcCCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhceEEeCCCCCHHHHHHHHHHHH
Confidence 456543 5799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHH
Q psy13354 572 NKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKI 651 (1342)
Q Consensus 572 ~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L 651 (1342)
+++|+.++++++..++..++||+|.+++.|+.+... .+.||.++|..+.+....+.++++++.+..++...+...+.++
T Consensus 703 ~~Egi~i~~e~L~~Ia~~s~GDlR~AIn~Lq~~~~~-~~~It~~~V~~~~~~~~~~~I~~il~~~l~~~~~~ar~~l~el 781 (846)
T PRK04132 703 ENEGLELTEEGLQAILYIAEGDMRRAINILQAAAAL-DDKITDENVFLVASRARPEDIREMMLLALKGNFLKAREKLREI 781 (846)
T ss_pred HhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHh-cCCCCHHHHHHHhCCCCHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 999999999999999999999999999999876543 4679999999999999999999999999999999999998887
Q ss_pred H-HcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHH
Q psy13354 652 E-IYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTM 730 (1342)
Q Consensus 652 ~-~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~ 730 (1342)
+ ..|.++..++..+...+... . .+...-.+++..+++.|..+..+.++.+-++.
T Consensus 782 l~~~G~~~~~iL~~l~~~l~~~---~----------------------i~~~~k~~ll~~lae~e~rl~~G~n~~iqL~a 836 (846)
T PRK04132 782 LLKQGLSGEDVLVQMHREVFNL---P----------------------IDEPKKVELADKIGEYNFRLVEGANEMIQLEA 836 (846)
T ss_pred HHHhCCCHHHHHHHHHHHHHhc---C----------------------CCHHHHHHHHHHHHHHhHHHHCCCCHHHHHHH
Confidence 7 78999998888887766221 0 11122346888999999999999999999999
Q ss_pred HHHHhHcc
Q psy13354 731 TLLRMLVF 738 (1342)
Q Consensus 731 ~ll~l~~~ 738 (1342)
|+.++|.+
T Consensus 837 ~la~~~~~ 844 (846)
T PRK04132 837 LLAQFTLM 844 (846)
T ss_pred HHHHHHhh
Confidence 99998754
No 98
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.91 E-value=5.3e-24 Score=222.31 Aligned_cols=159 Identities=38% Similarity=0.663 Sum_probs=135.8
Q ss_pred cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc
Q psy13354 395 GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD 474 (1342)
Q Consensus 395 Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~ 474 (1342)
||+.+++.|.+.+++++++|+|||+||+|+||+++|+.+++.+.|.... ..+|+.|.+|..+..+.|+|+..++
T Consensus 1 gq~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~------~~~c~~c~~c~~~~~~~~~d~~~~~ 74 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPN------EDPCGECRSCRRIEEGNHPDFIIIK 74 (162)
T ss_dssp S-HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-C------TT--SSSHHHHHHHTT-CTTEEEEE
T ss_pred CcHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCC------CCCCCCCHHHHHHHhccCcceEEEe
Confidence 8999999999999999999999999999999999999999999997533 2399999999999999999999998
Q ss_pred cCCC---cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEE
Q psy13354 475 AAST---RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI 551 (1342)
Q Consensus 475 ~~~~---~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~ 551 (1342)
.... -++++++++.+.+...|..+.+||+|||++|.|+.+++|+|+++||+||++++|||+|++++++++||+|||+
T Consensus 75 ~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~~~~~il~TI~SRc~ 154 (162)
T PF13177_consen 75 PDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITNNPSKILPTIRSRCQ 154 (162)
T ss_dssp TTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES-GGGS-HHHHTTSE
T ss_pred cccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEECChHHChHHHHhhce
Confidence 7643 5789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCC
Q psy13354 552 QFNLKKML 559 (1342)
Q Consensus 552 ~i~~~~l~ 559 (1342)
.+.|++++
T Consensus 155 ~i~~~~ls 162 (162)
T PF13177_consen 155 VIRFRPLS 162 (162)
T ss_dssp EEEE----
T ss_pred EEecCCCC
Confidence 99999874
No 99
>KOG1359|consensus
Probab=99.91 E-value=1.5e-23 Score=221.66 Aligned_cols=314 Identities=21% Similarity=0.301 Sum_probs=246.8
Q ss_pred CceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+++.+||++.. ++++-..++ +.|+.|..+.++..+ ...+..||. +++++.+.+++++++ ++..||
T Consensus 67 k~ilnFcaNnYLGLsshPeii~a~~~al-eeyGaGlssvrfIcGtq~iHk~LE~----kiAqfh~rED~ilyp-scfdAN 140 (417)
T KOG1359|consen 67 KKILNFCANNYLGLSSHPEIINAGQKAL-EEYGAGLSSVRFICGTQDIHKLLES----KIAQFHGREDTILYP-SCFDAN 140 (417)
T ss_pred cceeeecccccccccCChHHHHHHHHHH-HHhCCCccceeEEecchHHHHHHHH----HHHHHhCCCceEEec-cccccc
Confidence 457778889999876 888878787 578888888887744 556666666 999999999999999 999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHH---hcCCeEEEEcCCCCC-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAK---KNKPKLIIAGASAYS- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~---~~~~~liv~~~s~~~- 178 (1342)
..++-+++.|.|.|+.-.+.|...........+ -..+|+-.++..+. +.+.++|+. .+.++
T Consensus 141 ag~feail~pedAvfSDeLNhASIIdGirLckr--------------y~h~dv~~l~~~l~~a~k~r~klv~T-Dg~FSM 205 (417)
T KOG1359|consen 141 AGAFEAILTPEDAVFSDELNHASIIDGIRLCKR--------------YRHVDVFDLEHCLISACKMRLKLVVT-DGVFSM 205 (417)
T ss_pred hHHHHHhcChhhhhhccccccchhhhhhHHHhh--------------hccchhHHHHHHHHHhhhheEEEEEe-cceecc
Confidence 999999999999998654444332222211111 11235555554333 234455554 55555
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...|+++|.+++++||++|++||+|+.|+++.. +..+....+|++.++++|+++|..|||+.+++.++..++.
T Consensus 206 DGdiaPl~ei~~La~kYgaLlfiDecHaTgf~G~tGrGt~E~~~vm~~vdiinsTLgKAlGga~GGyttgp~~li~llrq 285 (417)
T KOG1359|consen 206 DGDIAPLEEISQLAKKYGALLFIDECHATGFFGETGRGTAEEFGVMGDVDIINSTLGKALGGASGGYTTGPKPLISLLRQ 285 (417)
T ss_pred CCCcccHHHHHHHHHhcCcEEEEeecccceeecCCCCChHHHhCCCCcceehhhhhhhhhcCCCCCCccCChhHHHHHHh
Confidence 666999999999999999999999999887652 3345555689999999999988899999999999999999
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...++.++++..|...+.+.+..+.+- .-....++.+.+.+++++.++..||.+.. ...+++++.+.+...+...+.
T Consensus 286 r~RpylFSnslppavV~~a~ka~dllm-~s~~~i~~~~a~~qrfr~~me~aGftIsg--~~hPI~pv~lGda~lA~~~ad 362 (417)
T KOG1359|consen 286 RSRPYLFSNSLPPAVVGMAAKAYDLLM-VSSKEIQSRQANTQRFREFMEAAGFTISG--ASHPICPVMLGDARLASKMAD 362 (417)
T ss_pred cCCceeecCCCChhhhhhhHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCceecC--CCCCccceecccHHHHHHHHH
Confidence 999999999888888777766666653 33456788899999999999999999843 456788888888877889999
Q ss_pred HHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+|++ ||+|..+.+|.+|.+ ..++|+.+++.|+.
T Consensus 363 ~lLk~-Gi~Vigfs~PvVP~g---kariRVqiSAaHt~ 396 (417)
T KOG1359|consen 363 ELLKR-GIYVIGFSYPVVPKG---KARIRVQISAAHTE 396 (417)
T ss_pred HHHhc-CceEEeecCCcCCCC---ceEEEEEEehhcCH
Confidence 99987 999999999999987 78899999998884
No 100
>KOG1360|consensus
Probab=99.91 E-value=4.5e-23 Score=225.96 Aligned_cols=323 Identities=23% Similarity=0.324 Sum_probs=260.7
Q ss_pred CceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.+..||+++|++.. |.+|+.+.+. +|+.|-++.+...+ +..+..||+ .++++.+.+.+++|+ |+..|+
T Consensus 171 k~VtVWCSNDYLgms~Hp~V~~A~~~tl~-~hG~GAGGTRNIsG~s~~hv~LE~----eLA~LHqK~aALlFs-SCfVAN 244 (570)
T KOG1360|consen 171 KKVTVWCSNDYLGMSRHPEVLDAMHDTLD-RHGAGAGGTRNISGHSKHHVRLEA----ELADLHQKEAALLFS-SCFVAN 244 (570)
T ss_pred CceEEEecCccccccCChHHHHHHHHHHH-HcCCCcCCccccCCCCchhhhHHH----HHHHHhcCcceeeee-eeeecc
Confidence 568889999999865 9999999995 77777777776644 777788888 899999999999999 999999
Q ss_pred HHHHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEc--CC
Q psy13354 103 QAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAG--AS 175 (1342)
Q Consensus 103 ~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~--~s 175 (1342)
...+..+. =||-+|+. ..+.|.+...-++-.++ .-..+..+ |+++|++++... .|++|-.. .+
T Consensus 245 DstLftLak~lpgcei~S---D~gNHASMI~GIrns~v--~K~IFrHN-----D~~hL~~lL~~~~~svPKivAFEtVhS 314 (570)
T KOG1360|consen 245 DSTLFTLAKKLPGCEIFS---DEGNHASMIQGIRNSRV--PKHIFRHN-----DLDHLEQLLQSSPKSVPKIVAFETVHS 314 (570)
T ss_pred chHHHHHHHHCCCcEEec---cccchHHHHHHhhhcCC--cceeeccC-----CHHHHHHHHHhCCCCCCceEEEeeeec
Confidence 99988883 48878773 33555555444444443 33445666 899999988754 45665542 24
Q ss_pred CCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhc-----CCCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHh
Q psy13354 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-----GEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIIN 250 (1342)
Q Consensus 176 ~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-----~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~ 250 (1342)
+.+...|+++|++++++||++-++||+|+.|.++. +...+.++..||+.+++.|+| |--||||++...+++.++
T Consensus 315 M~GavcpleelcDvah~yGAiTFlDEVHAVGlYG~rGaGvgerdGvm~kvDiIsGTLgKaf-GcVGGYIAat~~LvDmiR 393 (570)
T KOG1360|consen 315 MDGAVCPLEELCDVAHKYGAITFLDEVHAVGLYGPRGAGVGERDGVMHKVDIISGTLGKAF-GCVGGYIAATRKLVDMIR 393 (570)
T ss_pred cCCCcCCHHHHHHHHHHhCceeeeehhhhhccccCCCCCccccCCcchhhhhcccchhhhc-ccccceehhhhhHHHHHH
Confidence 44477799999999999999999999999998865 244555666899999999999 888999999999999999
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
....++.++++..|...+-++...+++. ++....+...+++..++++.|.+.|+++.. .+++++++.+.+...+.+.
T Consensus 394 SyAaGFIFTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~GiPVi~--~pSHIiPv~vgda~l~~~~ 471 (570)
T KOG1360|consen 394 SYAAGFIFTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELGIPVIP--NPSHIIPVRVGDAALAKQA 471 (570)
T ss_pred HhcCceEEecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcCCcccC--CCcceeeeeccCHHHHHHH
Confidence 9999999988877776666666666653 234566778899999999999999999865 5689999999998888899
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFS 372 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~ 372 (1342)
...|+.++||+|-...+|.++.+ ..++|+..++.+|..+.
T Consensus 472 sd~Li~~h~iYvQaINyPTV~rG---~E~LRiaPTP~HT~~mm 511 (570)
T KOG1360|consen 472 SDILISKHNIYVQAINYPTVARG---TERLRIAPTPHHTPQMM 511 (570)
T ss_pred HHHHHHhcCeEEEeccCCccccc---ceeeecCCCCCCCHHHH
Confidence 99999999999999999999987 78899999999886554
No 101
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.91 E-value=4.3e-23 Score=258.90 Aligned_cols=259 Identities=23% Similarity=0.349 Sum_probs=212.6
Q ss_pred HHHHhhccCCCCccccccchhhH---HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHIS---KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~---~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+.||||++|++++||++++ ..|.+.+..++.++ ++||||||+|||++|+++++.+.+
T Consensus 15 ~~PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~~~~~~s-lLL~GPpGtGKTTLA~aIA~~~~~--------------- 78 (725)
T PRK13341 15 EAPLADRLRPRTLEEFVGQDHILGEGRLLRRAIKADRVGS-LILYGPPGVGKTTLARIIANHTRA--------------- 78 (725)
T ss_pred cCChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHhcC---------------
Confidence 34899999999999999999998 46888999998876 699999999999999999998763
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh-hcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEE
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI-YAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFI 533 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~-~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlI 533 (1342)
.+..+++. ..++.++++.++.+. ..+..+.+.+++|||+|.|+...+++|+.++++ ..+++|
T Consensus 79 --------------~f~~lna~-~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE~--g~IiLI 141 (725)
T PRK13341 79 --------------HFSSLNAV-LAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVEN--GTITLI 141 (725)
T ss_pred --------------cceeehhh-hhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhcC--ceEEEE
Confidence 23444443 234456666666552 234445678999999999999999999999987 356677
Q ss_pred EEeCCCC--CChHHHhccEEEEEEcCCCHHHHHHHHHHHHH-------hcCCCcchhHHHHHHHhcCCcHHHHHHHHHHH
Q psy13354 534 LATTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLCYILN-------KENIKFETSALNLIATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 534 l~t~~~~--kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~-------~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl 604 (1342)
.+++... ++.+++.|||.++.|++++.+++..++.+.+. .+++.++++++++|++.+.||+|.+++.|+.+
T Consensus 142 ~aTTenp~~~l~~aL~SR~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R~lln~Le~a 221 (725)
T PRK13341 142 GATTENPYFEVNKALVSRSRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDARSLLNALELA 221 (725)
T ss_pred EecCCChHhhhhhHhhccccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 7665543 67789999999999999999999999999887 56789999999999999999999999999997
Q ss_pred HhhcC----C--CCCHHHHHHHhcc----------CcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q psy13354 605 INYSS----E--KITLNSMQEMLSI----------IDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLL 668 (1342)
Q Consensus 605 ~~~~~----~--~It~e~V~~~v~~----------~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~ 668 (1342)
...+. + .||.+++++.+.. ...+.|..+++++..+|.+.|+..+.+|+..|++|..|+..|...
T Consensus 222 ~~~~~~~~~~~i~It~~~~~e~l~~~~~~ydk~gd~hyd~Isa~~ksirgsD~daAl~~la~ml~~Gedp~~I~Rrl~~~ 301 (725)
T PRK13341 222 VESTPPDEDGLIDITLAIAEESIQQRAVLYDKEGDAHFDTISAFIKSLRGSDPDAALYWLARMVEAGEDPRFIFRRMLIA 301 (725)
T ss_pred HHhcccCCCCceeccHHHHHHHHHHhhhhcccCCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 65431 1 2788888887643 344689999999999999999999999999999999888766554
Q ss_pred H
Q psy13354 669 L 669 (1342)
Q Consensus 669 ~ 669 (1342)
.
T Consensus 302 a 302 (725)
T PRK13341 302 A 302 (725)
T ss_pred H
Confidence 3
No 102
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=99.90 E-value=2e-25 Score=260.04 Aligned_cols=247 Identities=13% Similarity=0.089 Sum_probs=174.6
Q ss_pred cCeeEEec-ccceEEEeCCeEEEEEeCCC-cEEEcceEEEecccCCCceeEecccccCCCCCCCcc--hHHHHHHHHHcC
Q psy13354 821 LNLYLFQE-EVDDLIIKTNKILGVVTKIG-IKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS--TTSLAKRLKELQ 896 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~~~~~~gv~~~~g-~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~--s~~l~~~l~~~g 896 (1342)
.||+|+.+ +|++| +++. .+|.+..+ ..++|++|||||| |.++|.+|++|++| +..|+|++.+.-
T Consensus 99 ~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtG---------G~s~p~~Gs~g~gy~la~~lGh~i~~~~ 166 (376)
T TIGR03862 99 QGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALG---------GASWSQLGSDGAWQQVLDQRGVSVAPFA 166 (376)
T ss_pred CCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCC---------CccccccCCCcHHHHHHHHCCCcccCCc
Confidence 89999666 79998 5554 57877543 4699999999999 99999999999988 888888888888
Q ss_pred CCccccccCCC-c---ccccCccccccc----eeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccC
Q psy13354 897 LSHGRLKTGTP-P---RIDKRTIDFSKM----EEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNS 968 (1342)
Q Consensus 897 ~~~~~~~~~~~-~---r~~~~si~~~~~----~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~ 968 (1342)
+.+++|++..+ + .+.+-+++...+ ..+.|| +.|||||+|||+++ ++|+++...... ..-....+|+.
T Consensus 167 PaL~pl~~~~~~~~~~~L~Gv~~~~~~~~~~~~~~~Ge-llFTh~GiSGpavl---~lS~~~~~~~~~-~~~~~i~idf~ 241 (376)
T TIGR03862 167 PANCGFLVDWSAHFASRFAGEPLKRVNATAGTQQTRGE-IVITARGLEGGLIY---ALSAALREQIKA-GGSANLFLDLL 241 (376)
T ss_pred CeeceEEccCchhhHhhcCCCcccceEEEeCCeeEeee-EEEECCCccHHHHH---HHHHHHHHHHhc-CCceEEEEECC
Confidence 88888887653 1 267777654322 134599 99999999999999 999998532111 11134678999
Q ss_pred CCCc-cccccccCCCCCCcccccccCCCCCccceeEeeccccccee-ecCccccCCCHHHHHHHHHhcccc---------
Q psy13354 969 PIFS-GKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEY-YPNGISTSLPFEAQIELVQSIDGM--------- 1037 (1342)
Q Consensus 969 p~~~-~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~-~~~g~~~~l~~~~q~~~~~~i~gl--------- 1037 (1342)
|.++ +++.....+. ++.+..+.+....-+++.+.. ....++....+++..++++.++.+
T Consensus 242 P~~~~~~l~~~l~~~----------~~~k~l~~~L~~~~gi~~~~~~~~~~~~~~~~~~~~~~l~~~lk~~~~~v~g~~~ 311 (376)
T TIGR03862 242 PDLSLEQVTKRLAAP----------RGKQSLSNHLRKALGLDGVKRALLREVFPKAAWSQPETLAQTIKALPLPLDGTRP 311 (376)
T ss_pred CCCCHHHHHHHHHhh----------cccchHHHHHHHHhCCCHHHHHHHHHHhhccCHHHHHHHHHHHhCCeeeecccCC
Confidence 9996 3332211111 111211111110001110000 011112222367889999999877
Q ss_pred -cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------HHHHHHHHHHHHHHHh
Q psy13354 1038 -KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------AASQGLLAGLNAALFS 1101 (1342)
Q Consensus 1038 -e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A~~~G~~Ag~na~~~~ 1101 (1342)
++|+||+|||++++ |||+ +| ||.+||||||||++|++|.++ ||++|++||.+|+-++
T Consensus 312 ~~~A~VT~GGV~~~E--I~~~----~~-Sk~~pgLYf~GEvLDvdG~~GGYNLq~AwsSG~~AG~~~~~~~ 375 (376)
T TIGR03862 312 IDEAISTAGGVRQDA--LDES----LM-LKARPGVFCAGEMLDWEAPTGGYLLTACFATGRAAGRGVHSWL 375 (376)
T ss_pred cceEEEeCCcccHHH--cChh----hh-cccCCCeEEEEEEEeeccCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999 9976 55 999999999999999999995 9999999999998654
No 103
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.7e-21 Score=231.57 Aligned_cols=322 Identities=17% Similarity=0.197 Sum_probs=241.7
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc---c
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV---L 110 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al---~ 110 (1342)
....|..|++++.+.....+ .+..+..+.......+..+++|+.+++++|++ +.++|+.|.|+|++.+..++ +
T Consensus 31 ~~~~p~~V~~a~~~~~~~~~--an~~r~~~~~~~~~t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~~ 108 (405)
T COG0520 31 TSQKPQAVLDAVAEYYRRYN--ANVHRGAHTLAEEATDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRSL 108 (405)
T ss_pred cccCCHHHHHHHHHHHHhhc--CCcCcccchHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhhh
Confidence 44567779999888775333 33444444555666677888999999999987 66888879999999999998 6
Q ss_pred CCCCEEEEeeccCCccchhhHHhhh-CCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHH
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNM-SGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYH 188 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~-~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~ 188 (1342)
.+||+|+++..+|++....|..+.. .|..++.+ +.++++.++.+.++..+++.++.+.+.+.+|.+ ...|+++|++
T Consensus 109 ~~gdeIv~s~~EH~sn~~pw~~~~~~~Ga~v~~i--~~~~~g~~~~~~~~~~i~~~Tklvais~vSn~tG~~~pv~~I~~ 186 (405)
T COG0520 109 KPGDEIVVSDLEHHSNIVPWQELAKRTGAKVRVI--PLDDDGLLDLDALEKLITPKTKLVALSHVSNVTGTVNPVKEIAE 186 (405)
T ss_pred cCCCEEEEccCcchhhHHHHHHHHHhcCcEEEEE--ecCCCCCcCHHHHHHhcCCCceEEEEECccccccccchHHHHHH
Confidence 9999999999999998888876654 48755555 555789999999999888766666666677777 5559999999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---------- 253 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---------- 253 (1342)
+||++|+++++|++|+.+.. +++ .+|++++|.|||+.||.| |++++++++.+.+.+..
T Consensus 187 la~~~ga~v~VDaaq~~~h~-------~idv~~l~~Df~afsgHKwl~gP~GiGvLy~r~~~l~~l~P~~~gg~~~~~~~ 259 (405)
T COG0520 187 LAHEHGALVLVDAAQAAGHL-------PIDVQELGCDFLAFSGHKWLLGPTGIGVLYVRKELLEELEPFLGGGGMIEYVS 259 (405)
T ss_pred HHHHcCCEEEEECccccCcc-------CCCchhcCCCEEEEcccccccCCCceEEEEEchHHHhhcCCcccCCCceeeec
Confidence 99999999999999998876 332 379999999999989999 99999999888874321
Q ss_pred -----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC--CCeEEEEE
Q psy13354 254 -----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT--KSHIILVD 319 (1342)
Q Consensus 254 -----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~--~~~~v~i~ 319 (1342)
..+-.++++.....++.+++......+++.+.++..++..++.+.|.+. +++++.++. ...++.+.
T Consensus 260 ~~~~~~~~~~p~rfe~gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~~~v~i~g~~~~~r~~~vsF~ 339 (405)
T COG0520 260 RDEGVTLAELPLRFEAGTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSELPGVEIYGPPDADRGGIVSFN 339 (405)
T ss_pred ccccccccCcchhhccCCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCcccCceEEEEE
Confidence 1122366667777777777777766678888899999999999999986 577766443 45677777
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCC--Ccccccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPE--KPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~--~~~~~~~lRi~~~~~~t~~ 370 (1342)
+... ........|.++||.++.+.....+. ..-..+.+|+|++.++|.+
T Consensus 340 v~~~--~~~dv~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~e 390 (405)
T COG0520 340 VKGI--HPHDVATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEE 390 (405)
T ss_pred eCCC--CHHHHHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHH
Confidence 7664 33444555555689998763222110 0001234999999998853
No 104
>PLN02483 serine palmitoyltransferase
Probab=99.90 E-value=1.1e-21 Score=240.80 Aligned_cols=320 Identities=19% Similarity=0.214 Sum_probs=219.9
Q ss_pred ceeeeecCCCCcHH-----HHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 29 NIELIASENYTSLA-----VMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-----v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
....++++||++.. +.++..+++. +|+.+..+++. ++....+.++|+ .+++++|.+++++++ +|+.++
T Consensus 101 ~~~n~~s~~YLgl~~~~~~~~~~~~~ai~-~~g~~~~~sr~~~g~~~~~~ele~----~lA~~~g~~~ai~~~-~G~~an 174 (489)
T PLN02483 101 RCLNLGSYNYLGFAAADEYCTPRVIESLK-KYSASTCSSRVDGGTTKLHRELEE----LVARFVGKPAAIVFG-MGYATN 174 (489)
T ss_pred eEEEeecCCccCcCCCCHHHHHHHHHHHH-HhCCCCCccccccCCcHHHHHHHH----HHHHHhCCCcEEEEC-CHHHHH
Confidence 34567889998775 5677777775 56555445543 455666777777 899999988888888 899999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-------cC----CeEEE
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-------NK----PKLII 171 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-------~~----~~liv 171 (1342)
..++.+++++||+|++..+.|+ +....+...|.. ++.++.+ |++++++.+++ .+ .++++
T Consensus 175 ~~~i~al~~~Gd~Vi~d~~~h~---s~~~~~~~~Ga~--v~~~~~~-----d~~~le~~l~~~i~~~~p~t~~p~~k~li 244 (489)
T PLN02483 175 STIIPALIGKGGLIISDSLNHN---SIVNGARGSGAT--IRVFQHN-----TPSHLEEVLREQIAEGQPRTHRPWKKIIV 244 (489)
T ss_pred HHHHHHhCCCCCEEEEcchhhH---HHHHHHHHcCCe--EEEEeCC-----CHHHHHHHHHhhhhccccccccCCceEEE
Confidence 9999999999999997665544 444555677774 4444554 56666665542 11 24555
Q ss_pred EcCCCCC---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCC-CCCCcEEEecCCccCCCCCeeEEEEe
Q psy13354 172 AGASAYS---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNP-VPFADFITSTTHKSLRGPRGGFILMK 242 (1342)
Q Consensus 172 ~~~s~~~---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~-l~~~Divv~S~sK~l~gp~GG~iv~~ 242 (1342)
++.+.++ ...++++|+++|++||++||+||+|+.|..+.. . +.+. ....|++++||||++ |+.|||++++
T Consensus 245 vve~v~s~~G~~~~l~~I~~la~~~~~~livDEa~s~g~~G~~G~g~~~~~~v~~~~~dI~~~SfSKs~-g~~GG~i~~~ 323 (489)
T PLN02483 245 IVEGIYSMEGELCKLPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRGVCELLGVDPADVDIMMGTFTKSF-GSCGGYIAGS 323 (489)
T ss_pred EECCCCCCCCcccCHHHHHHHHHHcCCEEEEECcCccCccCCCCCchHHhcCCCcccCcEEEEecchhc-ccCceEEEcC
Confidence 5454444 456999999999999999999999987655321 1 1111 123689999999999 7889999999
Q ss_pred chhHHHHhhccCCccccCCcHHH-HHHHHHHHHHhc----cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHV-IAAKAVAFKEVL----KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~-~~Aaa~al~~~l----~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
+++++.++.....+.+++...+. ..++..++..+. .+...+.++++.++++++++.|++.|+.+.. +.+++++|
T Consensus 324 ~~li~~l~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~v~~-~~~sp~~~ 402 (489)
T PLN02483 324 KELIQYLKRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFEVLG-DNDSPVMP 402 (489)
T ss_pred HHHHHHHHHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCcccC-CCCCCEEE
Confidence 99999998754444444333333 333333332221 1234556788999999999999999987643 34556777
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.+.......++...++++ ||.+.+..+|..+.. .+++|++++..++.+
T Consensus 403 l~l~~~~~~~~~~~~Ll~~-GI~v~~~~fp~~p~~---~~~vRi~isa~~t~e 451 (489)
T PLN02483 403 IMLYNPAKIPAFSRECLKQ-NVAVVVVGFPATPLL---LARARICISASHSRE 451 (489)
T ss_pred EEECCHHHHHHHHHHHHHC-CcEEeeeCCCCCCCC---CceEEEEeCCCCCHH
Confidence 7665433344677777764 999998666655543 467999999877754
No 105
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=99.90 E-value=2.1e-21 Score=216.22 Aligned_cols=320 Identities=14% Similarity=0.160 Sum_probs=239.6
Q ss_pred cCceeeeecC-CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASE-NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~-n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|+++..+ ++ .+|++++|+.+++. +...||+ ...+++.+++.++.++.++.+ +.++++++..-+
T Consensus 25 ~DvlPmWVADMDf~~pp~i~~Al~~rvd-hGvfGY~--------~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpg 95 (388)
T COG1168 25 EDVLPMWVADMDFPTPPEIIEALRERVD-HGVFGYP--------YGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPG 95 (388)
T ss_pred CCcceeeeecccCCCCHHHHHHHHHHHh-cCCCCCC--------CCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHh
Confidence 4668887664 66 56669999999985 3334554 223467777888999998876 556677688889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+..+++++..|||.|++.++.|+. ....+...|..+-..++..+ ..+.+|.++|++.+.+.+++++++|+|+||
T Consensus 96 i~~~I~~~T~~gd~Vvi~tPvY~P---F~~~i~~n~R~~i~~pL~~~~~~y~iD~~~LE~~~~~~~vkl~iLCnPHNP~G 172 (388)
T COG1168 96 ISLAIRALTKPGDGVVIQTPVYPP---FYNAIKLNGRKVIENPLVEDDGRYEIDFDALEKAFVDERVKLFILCNPHNPTG 172 (388)
T ss_pred HHHHHHHhCcCCCeeEecCCCchH---HHHHHhhcCcEEEeccccccCCcEEecHHHHHHHHhcCCccEEEEeCCCCCCC
Confidence 999999999999999987755543 45556777774444443322 446789999999999888889999998888
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----C--cEEEecCCccCCCCCe---eEEE-Eechh
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----A--DFITSTTHKSLRGPRG---GFIL-MKKKY 245 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~--Divv~S~sK~l~gp~G---G~iv-~~~~l 245 (1342)
+..++.+|.++|.+||+.||+||+|+...+.+..+...... + .+.+.|.||+| ...| ++++ .++++
T Consensus 173 rvwt~eeL~~i~elc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtF-NlaGL~~a~~Ii~n~~l 251 (388)
T COG1168 173 RVWTKEELRKIAELCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTF-NLAGLKCAYIIISNREL 251 (388)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccc-cchhhhheeEEecCHHH
Confidence 33489999999999999999999999887766555543321 2 36778999999 5555 5555 45555
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEccCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
.............++++.....|..+|..+. ++|++++.+.+.+|++++.+.+.+. ++++. .|.+++..|++++..
T Consensus 252 r~~~~~~l~~~~~~~~n~lg~~A~~aAY~~G-~~WLd~L~~yl~~N~~~~~~~l~~~~P~v~v~-~p~gTYL~WLD~r~l 329 (388)
T COG1168 252 RAKFLKRLKRNGLHGPSALGIIATEAAYNQG-EPWLDELLEYLKDNRDYVADFLNKHLPGVKVT-EPQGTYLAWLDCREL 329 (388)
T ss_pred HHHHHHHHHHhcCCCCchHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEe-cCCCceeeeeecccc
Confidence 4444333334455566666777766666554 4599999999999999999999985 67764 478899999999998
Q ss_pred CCCH-HHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 324 KITG-KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 324 ~~~~-~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+. +....++++.+|.+.++..|+..+ .+++|+.+..
T Consensus 330 ~l~d~~l~~~ll~~akVal~~G~~FG~~g----~gf~RlN~ac 368 (388)
T COG1168 330 GLDDSELAEFLLEEAKVALSPGSTFGEEG----SGFVRLNFAC 368 (388)
T ss_pred CCChHHHHHHHHHhhcEeccCCCccCcCC----CceEEEecCC
Confidence 8874 788888899999999888887655 4778987654
No 106
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=99.90 E-value=9.5e-22 Score=237.65 Aligned_cols=315 Identities=19% Similarity=0.268 Sum_probs=211.6
Q ss_pred eeecCCCC----cHHHHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 32 LIASENYT----SLAVMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 32 l~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
.+++.+|+ +|.+++++.+++. .+..+++++++..+ ...+.+ +++.+++++|.+++++++ ||++|+..++
T Consensus 42 ~~~~~~~lg~~~~~~v~~~~~~~~~-~~~~~~~~s~~~~G~~~~~~~----le~~ia~~~g~~~~ii~~-~~~~a~~~~~ 115 (393)
T TIGR01822 42 NFCANNYLGLSSHPDLIQAAKDALD-EHGFGMSSVRFICGTQDIHKE----LEAKIAAFLGTEDTILYA-SCFDANGGLF 115 (393)
T ss_pred EeeCCCccccCCCHHHHHHHHHHHH-HhCCCCCCcCcccCChHHHHH----HHHHHHHHhCCCcEEEEC-chHHHHHHHH
Confidence 45555653 4458999888885 44456777766544 333344 445999999998888887 9999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--c
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~ 179 (1342)
.+++++||+|++....|++.. ..+...+. ..+.+. .+|++++++.+++. ++++|++...+++ .
T Consensus 116 ~~l~~~gd~vi~~~~~~~s~~---~~~~~~~~--~~~~~~-----~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~ 185 (393)
T TIGR01822 116 ETLLGAEDAIISDALNHASII---DGVRLCKA--KRYRYA-----NNDMADLEAQLKEARAAGARHRLIATDGVFSMDGV 185 (393)
T ss_pred HHhCCCCCEEEEeccccHHHH---HHHHhcCC--ceEEeC-----CCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCC
Confidence 999999999998776665543 33344443 223222 25899999988752 4456665433223 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC-----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|+++|++||++||+|++|+.|..+... ..+....+|++++|+||+++|+.|||+++++++++.+.....
T Consensus 186 ~~~l~~i~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~di~~~s~sK~l~g~r~G~~~~~~~~~~~l~~~~~ 265 (393)
T TIGR01822 186 IAPLDEICDLADKYDALVMVDECHATGFLGPTGRGSHELCGVMGRVDIITGTLGKALGGASGGFTTARKEVVELLRQRSR 265 (393)
T ss_pred cCCHHHHHHHHHHcCCEEEEECCccccCcCCCCCchHHhcCCCCCCeEEEEEChHHhhCCCcEEEEeCHHHHHHHHHhCc
Confidence 569999999999999999999999877653211 111122468999999999977778999999999888876444
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++.++++..+...+++.+..+... ..++.++++.++++++.+.|.+.|+.+.. +..+++++.+.+...+.+++..++
T Consensus 266 ~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~i~~~~~~~~~~l~~~L~ 342 (393)
T TIGR01822 266 PYLFSNSLPPAVVGASIKVLEMLE-ASNELRDRLWANTRYFRERMEAAGFDIKP--ADHPIIPVMLYDAVLAQRFARRLL 342 (393)
T ss_pred cceecCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCEEEEEeCCHHHHHHHHHHHH
Confidence 444444333333322333333333 44567889999999999999888877632 234455555543223456667666
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++ ||.+....+|..+.+ ..++|++++..++.
T Consensus 343 ~~-gI~v~~~~~~~~~~~---~~~iRis~~~~~t~ 373 (393)
T TIGR01822 343 EE-GIYVTGFFYPVVPKG---QARIRVQISAAHTE 373 (393)
T ss_pred HC-CeeEeeeCCCCCCCC---CceEEEEECCCCCH
Confidence 65 999986555543322 34699999887664
No 107
>PRK09276 LL-diaminopimelate aminotransferase; Provisional
Probab=99.90 E-value=1.5e-21 Score=235.22 Aligned_cols=320 Identities=14% Similarity=0.096 Sum_probs=219.0
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~A 101 (1342)
+.+.+..+++.+ ++.+.+++.+.+... ....|....+..++++++++++.+.+|.+ +.+++++|+++|
T Consensus 32 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~ 105 (385)
T PRK09276 32 DVISLGIGDPDLPTPDHIIEAMCKAVEDP------ENHQYPSYEGMLEFRKAVADWYKRRFGVELDPETEVISLIGSKEG 105 (385)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHHhCC------CCCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHH
Confidence 457788777543 334777777666321 11224444556788898888887776742 346666577889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC---
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--- 178 (1342)
+..++.++++|||+|+++.+.++.+ .......|..+..+++..+.++.+|++++++.+.+ +++++++++++||
T Consensus 106 i~~~~~~~~~~gd~Vl~~~P~y~~~---~~~~~~~g~~~~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~l~~p~NPtG~ 181 (385)
T PRK09276 106 IAHIPLAFVNPGDVVLVPDPGYPVY---KIGTIFAGGEPYFMPLKEENGFLPDLDAIPEDVAK-KAKLMFINYPNNPTGA 181 (385)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcCh---HHHHHHcCCEEEEEecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCCCC
Confidence 9999999999999999877555443 34445667744444332233467899999887765 5677777766666
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC---CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP---FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
....+++|+++|++||++||+||+|....+......+. ++ ...++++||||.| |++| ||+++++++++.
T Consensus 182 ~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~i~~~~l~~~ 260 (385)
T PRK09276 182 VADLEFFEEVVDFAKKYDIIVCHDAAYSEIAYDGYKPPSFLEVPGAKDVGIEFHSLSKTY-NMTGWRIGFAVGNADLIAG 260 (385)
T ss_pred CCCHHHHHHHHHHHHHCCcEEEEecchhheecCCCCCCChhccCCCcCCEEEEecchhhc-CCcchhheeeeCCHHHHHH
Confidence 22257899999999999999999997654432222221 11 1347889999999 7777 999999998888
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
+...... ...+.+.+.+.++..++.. ...++++.++++.++++++.+.|++.|+++.. +.+++++|+.+++...+.+
T Consensus 261 ~~~~~~~-~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~v~~~~~~~~~~ 337 (385)
T PRK09276 261 LGKVKSN-VDSGVFQAIQEAGIAALNG-PQEVVEELRKIYQERRDILVEGLRKLGLEVEP-PKATFYVWAPVPKGYTSAE 337 (385)
T ss_pred HHHHHhh-ccCCCCHHHHHHHHHHHcC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCcccC-CCcceEEEEECCCCCCHHH
Confidence 8764322 2223334445544444432 23467788888999999999999998877643 4567889999986555667
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+...+++++||.+.++..++... .+++|++++.
T Consensus 338 l~~~ll~~~gi~v~~g~~f~~~~----~~~~Ris~~~ 370 (385)
T PRK09276 338 FATLLLDKAGVVVTPGNGFGEYG----EGYFRIALTV 370 (385)
T ss_pred HHHHHHHhCCEEECCchhhCCCC----CCeEEEEeCC
Confidence 78888887899999876554322 3579999874
No 108
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=99.89 E-value=3.6e-22 Score=217.69 Aligned_cols=210 Identities=20% Similarity=0.298 Sum_probs=167.1
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC-CCcCHHHHHHHHH
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA-STRGINEMAQLLE 489 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~-~~~~~~~i~~ii~ 489 (1342)
..+|+|||+|++|+||..+|..+|+.+.|... ..+|+.|++|..+..+.|||+..+... ..-++++++++.+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~-------~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~ 77 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKA-------NGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIIN 77 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCC-------CCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHH
Confidence 57899999999999999999999999999742 148999999999999999999887543 3467899999999
Q ss_pred HHhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCC----------
Q psy13354 490 QTIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM---------- 558 (1342)
Q Consensus 490 ~~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l---------- 558 (1342)
.+...|+. +++||+||++++.|+.++.|+|||+||+||++++||++|++++++++||+|||+.+.|.++
T Consensus 78 ~l~~~s~e~~~~KV~II~~ae~m~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRCq~~~~~~~~~~~~~~~~~ 157 (261)
T PRK05818 78 KLNRPSVESNGKKIYIIYGIEKLNKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRCVQYVVLSKEKKVPFKVES 157 (261)
T ss_pred HHccCchhcCCCEEEEeccHhhhCHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhheeeeecCChhhhccccccc
Confidence 99887755 5799999999999999999999999999999999999999999999999999999999888
Q ss_pred CHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHH
Q psy13354 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDAL 636 (1342)
Q Consensus 559 ~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal 636 (1342)
++.++.+++.. ..+ +++ .++..++|++.++...++.+.......++...+..........++-.++.-+
T Consensus 158 ~~~~i~~~L~~---~~~--~d~----~i~~~a~g~~~~a~~l~~~l~n~~~~~~~v~kl~~~~~~~~~q~~~~~l~~l 226 (261)
T PRK05818 158 NDRYFQYILLS---FYS--VDE----QLQAYNNGSFSKLKNIIETLINKKNKLIQIHKAWILFKTFSYYEIAQLLNLL 226 (261)
T ss_pred ChHHHHHHHHH---ccC--ccH----HHHHHcCCCHHHHHHHHHHHHcccccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 55565555432 223 334 6677789999999999884422222224445555555554444444444444
No 109
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=99.89 E-value=1.2e-21 Score=237.15 Aligned_cols=318 Identities=25% Similarity=0.297 Sum_probs=220.0
Q ss_pred eeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
+..++++||++.. +++++.+++. .|..+..+++.. +..+.+.++++ .+++++|.+.+++++ +|++|+..
T Consensus 47 ~~~~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~Le~----~la~~~g~~~~l~~~-sG~~an~~ 120 (402)
T TIGR01821 47 VTVWCSNDYLGMGQHPEVLQAMHETLD-KYGAGAGGTRNISGTNIPHVELEA----ELADLHGKESALVFT-SGYVANDA 120 (402)
T ss_pred EEEeEccCcCCCCCCHHHHHHHHHHHH-HcCCCCcchhhhhCCcHHHHHHHH----HHHHHhCCCeEEEEC-chHHHHHH
Confidence 5578899998876 8999888885 565554444433 33444555555 899999987777776 99999999
Q ss_pred HHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC-
Q psy13354 105 VFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS- 178 (1342)
Q Consensus 105 al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~- 178 (1342)
++..+.. +|+.|+.....| .+....+...|..+ ..++.+ |++++++.+.. .++++|++++++++
T Consensus 121 ai~~l~~~~~~~~v~~~~~~h---~s~~~~~~~~g~~~--~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~e~~~~~~ 190 (402)
T TIGR01821 121 TLATLAKIIPGCVIFSDELNH---ASMIEGIRHSGAEK--FIFRHN-----DVAHLEKLLQSVDPNRPKIIAFESVYSMD 190 (402)
T ss_pred HHHHhhCCCCCCEEEEcchHh---HHHHHHHHHcCCeE--EEECCC-----CHHHHHHHHHhccCCCCeEEEEcCCCCCC
Confidence 9998865 777777544333 33333344555533 333433 77888887763 24567777665554
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhc
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~ 252 (1342)
...|+++|.++|++||+++|+||+|+.|.++.. . ..+..+.+|++++|+||++ |..|||+++++++++.++..
T Consensus 191 G~~~~l~~i~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~GG~i~~~~~~~~~l~~~ 269 (402)
T TIGR01821 191 GDIAPIEEICDLADKYGALTYLDEVHAVGLYGPRGGGIAERDGLMHRIDIIEGTLAKAF-GVVGGYIAASRKLIDAIRSY 269 (402)
T ss_pred CCccCHHHHHHHHHHcCCEEEEeCcccccccCCCCCccchhccCCCCCeEEEEechhhh-ccCCceeecCHHHHHHHHHh
Confidence 555999999999999999999999997765321 1 1111223589999999999 77889999999999888765
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
..++.+++..++..++++.+..+.+... ....+++.++++++.+.|++.|+++.. +.++++++.++......++...
T Consensus 270 ~~~~~~t~~~~~~~~aaa~aaL~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~i~~i~~~~~~~a~~~~~~ 346 (402)
T TIGR01821 270 APGFIFTTSLPPAIAAGATASIRHLKES-QDLRRAHQENVKRLKNLLEALGIPVIP--NPSHIVPVIIGDAALCKKVSDL 346 (402)
T ss_pred CcCceecCcCCHHHHHHHHHHHHHhhcC-HHHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCEEEEEeCCHHHHHHHHHH
Confidence 5555544444555454444555554423 455667788999999999998887643 3466777766432223466777
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+++++||.+.+..+|..+.+ ..++|++++..++.+
T Consensus 347 L~~~~Gi~v~~~~~p~~~~g---~~~lRis~~~~~t~e 381 (402)
T TIGR01821 347 LLNKHGIYVQPINYPTVPRG---TERLRITPTPAHTDK 381 (402)
T ss_pred HHhcCCEEEEeECCCCCCCC---CceEEEEeCCCCCHH
Confidence 77777999999887877644 467999999887743
No 110
>PRK07681 aspartate aminotransferase; Provisional
Probab=99.89 E-value=2.5e-21 Score=234.08 Aligned_cols=317 Identities=14% Similarity=0.081 Sum_probs=218.4
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C--CceEecCCHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E--AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~--~~vi~~~sGs~A 101 (1342)
+.+.+..+++. .++.+.+++.+.+......+ |. ..+..++++++++++.+.+|. + +.+++++|+++|
T Consensus 33 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~------y~-~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~a 105 (399)
T PRK07681 33 KMIDLSIGNPDMPPADFVREEMVHTANQKESYG------YT-LSGIQEFHEAVTEYYNNTHNVILNADKEVLLLMGSQDG 105 (399)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhccccCC------CC-CCCcHHHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHH
Confidence 55777777654 33447777776653211111 11 245568888888888776664 2 345666588889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++++||+|+++.+.|+.+ ...+...|. ++++++.+ +.+.+|++++++.+.+ +++++++++|+||
T Consensus 106 l~~~~~~~~~~Gd~Vlv~~P~y~~~---~~~~~~~G~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~v~l~~P~NPT 179 (399)
T PRK07681 106 LVHLPMVYANPGDIILVPDPGYTAY---ETGIQMAGA--TSYYMPLKKENDFLPDLELIPEEIAD-KAKMMILNFPGNPV 179 (399)
T ss_pred HHHHHHHhCCCCCEEEECCCCccch---HHHHHhcCC--EEEEEecCCCCCCcCCHHHHHHhccc-cceEEEEeCCCCCc
Confidence 9999999999999999777655544 444456677 45555554 3467899999888764 5677777766666
Q ss_pred ----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C---CCcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 179 ----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P---FADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 179 ----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
+...+++|+++|++||++||+||+|....+......+.. . ...++++||||.+ |.+| ||++++++++
T Consensus 180 G~~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~~i~~~~l~ 258 (399)
T PRK07681 180 PAMAHEDFFKEVIAFAKKHNIIVVHDFAYAEFYFDGNKPISFLSVPGAKEVGVEINSLSKSY-SLAGSRIGYMIGNEEIV 258 (399)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEeccchhheeCCCCCCChhhCCCCcccEEEEeeccccc-CCccceeEEEecCHHHH
Confidence 222588999999999999999999986544322222211 1 1357889999999 6666 9999999998
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
+.+........+ +.+.+.+.++..++.+ ...++++.++.+.++++++.+.|.+.|+.+. .+.+++++|++++....+
T Consensus 259 ~~~~~~~~~~~~-~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~-~p~~g~f~~~~l~~~~~~ 335 (399)
T PRK07681 259 RALTQFKSNTDY-GVFLPIQKAACAALRN-GAAFCEKNRGIYQERRDTLVDGFRTFGWNVD-KPAGSMFVWAEIPKGWTS 335 (399)
T ss_pred HHHHHHHhhccc-CCCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCeeeEEEEECCCCCCH
Confidence 888764332222 2334455555544433 2246777788889999999999999888753 356789999999865556
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+++..+++++||.+.++..++... .+++|++++.
T Consensus 336 ~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRis~~~ 370 (399)
T PRK07681 336 LSFAYALMDRANVVVTPGHAFGPHG----EGFVRIALVQ 370 (399)
T ss_pred HHHHHHHHHhCCEEEeCChhhCcCC----CCeEEEEecC
Confidence 7888888887899999876554322 3579999973
No 111
>KOG2035|consensus
Probab=99.89 E-value=2.4e-21 Score=205.16 Aligned_cols=326 Identities=20% Similarity=0.257 Sum_probs=234.4
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
-|..||+|++|+.++++++....|+.....+.+|| ++||||+|.||.|.+..+.+++...+....-. ...-...++-
T Consensus 2 LWvdkyrpksl~~l~~~~e~~~~Lksl~~~~d~PH-ll~yGPSGaGKKTrimclL~elYG~gveklki--~~~t~~tpS~ 78 (351)
T KOG2035|consen 2 LWVDKYRPKSLDELIYHEELANLLKSLSSTGDFPH-LLVYGPSGAGKKTRIMCLLRELYGVGVEKLKI--ETRTFTTPSK 78 (351)
T ss_pred cchhhcCcchhhhcccHHHHHHHHHHhcccCCCCe-EEEECCCCCCchhhHHHHHHHHhCCCchheee--eeEEEecCCC
Confidence 47899999999999999999999999988888988 89999999999999999999998532111000 0000001111
Q ss_pred --hhhccCCCccEEEEccCCCcCHH--HHHHHHHHH-hhcCc----cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcE
Q psy13354 460 --VKIDNGCFMDYIEMDAASTRGIN--EMAQLLEQT-IYAPI----NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYI 530 (1342)
Q Consensus 460 --~~~~~~~~~d~~~i~~~~~~~~~--~i~~ii~~~-~~~p~----~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~ 530 (1342)
..+..-++...+|+++++....| -+++++.+. ++.+. ...+|||+|.|+|.|+.+++.+|.+++|....++
T Consensus 79 kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~~~ 158 (351)
T KOG2035|consen 79 KKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRDAQHALRRTMEKYSSNC 158 (351)
T ss_pred ceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHHHHHHHHHHHHHHhcCc
Confidence 12222233445666665433322 466666543 33332 3468999999999999999999999999999999
Q ss_pred EEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCC
Q psy13354 531 KFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE 610 (1342)
Q Consensus 531 vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~ 610 (1342)
.+|+++|..+++.++|+|||..++.+.|+++|+...+...++++|+.++.+.+..+++.++||+|.++-.++-+.... .
T Consensus 159 RlIl~cns~SriIepIrSRCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS~~nLRrAllmlE~~~~~n-~ 237 (351)
T KOG2035|consen 159 RLILVCNSTSRIIEPIRSRCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKSNRNLRRALLMLEAVRVNN-E 237 (351)
T ss_pred eEEEEecCcccchhHHhhheeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHhcccHHHHHHHHHHHHhcc-c
Confidence 999999999999999999999999999999999999999999999999999999999999999999998888655432 1
Q ss_pred CCCHHHHHHHhccCcHH-HHHHHHHHHHccCh-HHHH---HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCC
Q psy13354 611 KITLNSMQEMLSIIDQK-YLIQILDALAEQDG-NLIL---SIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKD 685 (1342)
Q Consensus 611 ~It~e~V~~~v~~~~~~-~if~l~dal~~~~~-~~al---~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~ 685 (1342)
.-+.+- ..+...+++ .+-++.+.+...+. ++.+ ..+.+|+...-+|.-|+..|..++-. + .+
T Consensus 238 ~~~a~~--~~i~~~dWe~~i~e~a~~i~~eQs~~~L~~vR~~LYeLL~~CIPP~~Ilk~Ll~~Ll~----~-------~d 304 (351)
T KOG2035|consen 238 PFTANS--QVIPKPDWEIYIQEIARVILKEQSPAKLLEVRGRLYELLSHCIPPNTILKELLEELLL----K-------CD 304 (351)
T ss_pred cccccC--CCCCCccHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHh----c-------CC
Confidence 111110 122333444 45677777765554 3333 45677888999999999888876632 1 11
Q ss_pred chhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 686 SPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 686 ~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
... -..+.+..+.-+..+..|...-.-+|-|+.+++.
T Consensus 305 ~~~---------------k~~~~~~Aa~yEhRl~lG~KaIfHLEaFVA~fM~ 341 (351)
T KOG2035|consen 305 TQL---------------KLEVIQHAAKYEHRLRLGQKAIFHLEAFVAKFMC 341 (351)
T ss_pred chh---------------HHHHHHHHHHHHHHHhhcchhhhhHHHHHHHHHH
Confidence 111 1224445555566666555555677877777654
No 112
>PRK08960 hypothetical protein; Provisional
Probab=99.89 E-value=2.1e-21 Score=233.80 Aligned_cols=322 Identities=11% Similarity=0.072 Sum_probs=219.8
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+.+..+++. .++.+.+++.+.+.+.. ..|....+..++++++++++.+.+|.. +.+++++|+++|
T Consensus 32 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~a 104 (387)
T PRK08960 32 HDVIHLEIGEPDFTTAEPIVAAGQAALAAGH-------TRYTAARGLPALREAIAGFYAQRYGVDVDPERILVTPGGSGA 104 (387)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-------CccCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCcHHH
Confidence 355788877754 35558888887774211 113334556788887777777665532 455566588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q- 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~- 179 (1342)
+..++.+++.|||+|+++.+.|+.+. ..+...|..+..++++.+.++.+|++.+++.+++.+..+++. +++|| +
T Consensus 105 l~~~~~~~~~~gd~vlv~~p~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~~~~~i~i~-~p~NPtG~ 180 (387)
T PRK08960 105 LLLASSLLVDPGKHWLLADPGYPCNR---HFLRLVEGAAQLVPVGPDSRYQLTPALVERHWNADTVGALVA-SPANPTGT 180 (387)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCcchH---HHHHhcCCeEEEEecCcccCCCCCHHHHHHHhCccceEEEEE-CCCCCCCc
Confidence 99999999999999998876666554 334555665555544333456799999999887655555554 44555 2
Q ss_pred ---ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhh
Q psy13354 180 ---YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINS 251 (1342)
Q Consensus 180 ---~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~ 251 (1342)
...+++|+++|++||++||+||+|....+. +...+.... ..++++|+||.+ |++| ||+++++++++.+..
T Consensus 181 ~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~-~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~~~~~~~~ 258 (387)
T PRK08960 181 LLSRDELAALSQALRARGGHLVVDEIYHGLTYG-VDAASVLEVDDDAFVLNSFSKYF-GMTGWRLGWLVAPPAAVPELEK 258 (387)
T ss_pred CcCHHHHHHHHHHHHHcCCEEEEEccccccccC-CCCCChhhccCCEEEEeeccccc-CCcccEEEEEEcCHHHHHHHHH
Confidence 225778889999999999999998754332 222222221 247889999999 6666 999999998888766
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-CCCHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-KITGKIA 330 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-~~~~~~~ 330 (1342)
....+..+ .+.+.+.++..++.+....++...++.+.++++.+.+.|++.|+.+...+.+++++|+++++. ..+.+++
T Consensus 259 ~~~~~~~~-~s~~~q~a~~~~l~~~~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~g~~f~~~~~~~~~~~~~~~~ 337 (387)
T PRK08960 259 LAQNLYIS-ASTPAQHAALACFEPETLAILEARRAEFARRRDFLLPALRELGFGIAVEPQGAFYLYADISAFGGDAFAFC 337 (387)
T ss_pred HHhhhccC-CCHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcCCCeeEEEEEeccccCCCHHHHH
Confidence 43333333 334555555555443223467777888999999999999988876433456789999998763 3456777
Q ss_pred HHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+++++||.+.|+..++.... .+++|++++.
T Consensus 338 ~~ll~~~gi~v~pg~~f~~~~~---~~~iRi~~~~ 369 (387)
T PRK08960 338 RHFLETEHVAFTPGLDFGRHQA---GQHVRFAYTQ 369 (387)
T ss_pred HHHHHhCCEEEcCchHhCCCCC---CCeEEEEecC
Confidence 7888888999998866653221 3579999886
No 113
>KOG2028|consensus
Probab=99.89 E-value=3.3e-22 Score=217.83 Aligned_cols=301 Identities=21% Similarity=0.302 Sum_probs=236.3
Q ss_pred HHHHHHhhccCCCCccccccchhhH---HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 376 IIKVVLARKYRPSNFNTLIGQNHIS---KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 376 ~~~~~l~~k~~p~~f~~lvGq~~~~---~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
+...+|+++.||++++|.+||++++ ..|++.|+.++++. ++|+||||||||++|+.+++.....
T Consensus 123 ~qh~PLaermRPktL~dyvGQ~hlv~q~gllrs~ieq~~ipS-mIlWGppG~GKTtlArlia~tsk~~------------ 189 (554)
T KOG2028|consen 123 LQHKPLAERMRPKTLDDYVGQSHLVGQDGLLRSLIEQNRIPS-MILWGPPGTGKTTLARLIASTSKKH------------ 189 (554)
T ss_pred hccCChhhhcCcchHHHhcchhhhcCcchHHHHHHHcCCCCc-eEEecCCCCchHHHHHHHHhhcCCC------------
Confidence 3456899999999999999999998 56888999999986 7999999999999999999865421
Q ss_pred CCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhc-CccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEE
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYA-PINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIK 531 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~-p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~v 531 (1342)
+..|+++.+. ..++.+++++++.++.. .+..++.|++|||+|.+++..++.|+..+|+. .+.
T Consensus 190 --------------SyrfvelSAt-~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFNksQQD~fLP~VE~G--~I~ 252 (554)
T KOG2028|consen 190 --------------SYRFVELSAT-NAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFNKSQQDTFLPHVENG--DIT 252 (554)
T ss_pred --------------ceEEEEEecc-ccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhhhhhhhcccceeccC--ceE
Confidence 1246666554 46678999999988766 45667779999999999999999999999984 788
Q ss_pred EEEEeCCCCC--ChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhc-------------CCCcchhHHHHHHHhcCCcHHH
Q psy13354 532 FILATTEPQK--IPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE-------------NIKFETSALNLIATGAQGSMRD 596 (1342)
Q Consensus 532 lIl~t~~~~k--l~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~-------------g~~i~~~al~~La~~~~g~lr~ 596 (1342)
||.+|++... +-.+|.|||.++-+.+++.+.+..+|.+-.... -+.+++.++++++..+.||.|.
T Consensus 253 lIGATTENPSFqln~aLlSRC~VfvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~ 332 (554)
T KOG2028|consen 253 LIGATTENPSFQLNAALLSRCRVFVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARA 332 (554)
T ss_pred EEecccCCCccchhHHHHhccceeEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHH
Confidence 9999988774 456999999999999999999999998854411 1247889999999999999999
Q ss_pred HHHHHHHHHhhc---CC-----CCCHHHHHHHhccC----------cHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCH
Q psy13354 597 ALSLTDQAINYS---SE-----KITLNSMQEMLSII----------DQKYLIQILDALAEQDGNLILSIANKIEIYNLSY 658 (1342)
Q Consensus 597 a~~~L~kl~~~~---~~-----~It~e~V~~~v~~~----------~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~ 658 (1342)
++|.|+-.+... .+ .++.+||++.+..+ ..+.|..+-+.+..+|.+.++-++.++++.||+|
T Consensus 333 aLN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s~~~YDr~Ge~HYntISA~HKSmRG~D~nAslY~LaRMLegGEdP 412 (554)
T KOG2028|consen 333 ALNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRSHILYDRAGEEHYNTISALHKSMRGSDQNASLYWLARMLEGGEDP 412 (554)
T ss_pred HHHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhccceecccchhHHHHHHHHHHhhcCCccchHHHHHHHHHccCCCc
Confidence 999998764332 12 39999999988543 3357888888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhCcccccCCchhHHH---HHHHHhcCCHHHHHHHHHHHHHH
Q psy13354 659 SIVLKDLSLLLHQISLIQISPEILIKDSPNYNE---IIQLSKKFNIEQIQLFYQISIHG 714 (1342)
Q Consensus 659 ~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~---~~~~a~~~s~~~L~~~l~~l~~~ 714 (1342)
+-+...|.++-. .+-|...+..+-. ..+.+....+.+-.-++.+|.-.
T Consensus 413 LYVARRlvR~AS--------EDIGlaD~S~L~~Avaa~qav~~vGmPE~dviLAqC~v~ 463 (554)
T KOG2028|consen 413 LYVARRLVRFAS--------EDIGLADPSALTQAVAAYQAVHFVGMPECDVILAQCVVY 463 (554)
T ss_pred HHHHHHHHHHhh--------cccCcCCchhhHHHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 998887776542 2334444333222 23555556666665666555543
No 114
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=99.89 E-value=7.1e-25 Score=263.44 Aligned_cols=264 Identities=25% Similarity=0.252 Sum_probs=190.8
Q ss_pred HHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcc--
Q psy13354 808 LYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS-- 884 (1342)
Q Consensus 808 ~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~-- 884 (1342)
.+.+.+.+.++. .++++..+ +|+++..+++ ..+|.+ ++..+.||.||+||| |.+++.+|++|+.+
T Consensus 106 ~v~~~L~~~l~~-~gv~i~~~~~V~~i~~~~~-~~~v~~-~~~~i~ad~VIlAtG---------~~s~p~~gs~G~g~~l 173 (400)
T TIGR00275 106 DVLDALLNELKE-LGVEILTNSKVKSIKKDDN-GFGVET-SGGEYEADKVILATG---------GLSYPQLGSTGDGYEI 173 (400)
T ss_pred HHHHHHHHHHHH-CCCEEEeCCEEEEEEecCC-eEEEEE-CCcEEEcCEEEECCC---------CcccCCCCCCcHHHHH
Confidence 345555566654 57888665 6999865554 456777 566899999999999 88889888888877
Q ss_pred hHHHHHHHHHcCCCccccccCCC--cccccCccccc--------cceeecCCCCCCCcccccCCCCCCCCccccchhhcc
Q psy13354 885 TTSLAKRLKELQLSHGRLKTGTP--PRIDKRTIDFS--------KMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTN 954 (1342)
Q Consensus 885 s~~l~~~l~~~g~~~~~~~~~~~--~r~~~~si~~~--------~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~ 954 (1342)
+..+++.+.+.-+.+++++...| ..+.+-+++-. ....+.|| +.|||+++|||+++ ++|.|+....
T Consensus 174 a~~lG~~i~~~~P~l~~l~~~~~~~~~l~Gv~~~~~~~~~~~~~~~~~~~g~-llft~~gisG~~vl---~~s~~~~~~~ 249 (400)
T TIGR00275 174 AESLGHTIVPPVPALVPLTLDESFLKELSGISLDGVVLSLVNGKKVLEEFGD-LLFTHFGLSGPAIL---DLSAFAARAL 249 (400)
T ss_pred HHHCCCCEecccceEeEEEeCCcccccCCCCcCccEEEEecCCcEEEeeccc-EEEECCCcCHHHHH---HHHHHHHHHh
Confidence 55555655555556666665554 45555555332 23356799 99999999999999 9999986432
Q ss_pred hhHHHHHHhhcccCCCCc-cccccccCCCCCCcccccccCCCCCccceeEeecccccceeecCccccCCCHHHHHHHHHh
Q psy13354 955 EKTHNIIRSEFKNSPIFS-GKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQS 1033 (1342)
Q Consensus 955 ~~~~~~i~~~~~~~p~~~-~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~ 1033 (1342)
. ...-....+|+.|.++ +++.....+....-.+|.++.......+-.|.+..++...|.++....++++++..++++.
T Consensus 250 ~-~~~~~~~~id~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 328 (400)
T TIGR00275 250 L-KHKGVELEIDLLPDLSEEELEQRLKRLRKSNPKKTVKNILKGLLPKRLAELLLEQLGIDPDLPAAQLSKKEIKKLVQL 328 (400)
T ss_pred h-cCCCcEEEEEcCCCCCHHHHHHHHHHHHHHChhhhHHHHhhhhhhHHHHHHHHHHcCCCCCCChHHCCHHHHHHHHHH
Confidence 1 1122457789999997 3333222221111112222222222223335566667777888889999999999999999
Q ss_pred cccc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------HHHHHHHHH
Q psy13354 1034 IDGM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------AASQGLLAG 1094 (1342)
Q Consensus 1034 i~gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A~~~G~~Ag 1094 (1342)
++.+ ++|+||+|||++++ |||+ |||||++||||||||++|++|.++ ||++|++||
T Consensus 329 lk~~~~~~~g~~~~~~a~vt~GGv~~~e--i~~~----~m~~k~~~gly~~GE~lDv~g~~GGyNlq~a~~sg~~ag 399 (400)
T TIGR00275 329 LKNWPFTVSGTRGFKEAEVTAGGVSLKE--INPK----TMESKLVPGLYFAGEVLDVDGDTGGYNLQWAWSSGYLAG 399 (400)
T ss_pred HhCCEEEecCcCccceeEEecCcccchh--cChh----hhhhcCCCCeEEEEEEEecCCCCCchHHHHHHHHHHHhc
Confidence 9877 99999999999999 9999 999999999999999999999995 999999998
No 115
>PRK07179 hypothetical protein; Provisional
Probab=99.89 E-value=2.9e-21 Score=234.21 Aligned_cols=316 Identities=19% Similarity=0.239 Sum_probs=216.6
Q ss_pred eeeeecCCCCcHH----HHHHHhHHHHhccccCCC-CCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENYTSLA----VMEAQGTLLTNKYAEGYP-GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~-~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
+..+++++|++.. +++++.+.+. .++.+.. ++.+..+.....++++ .+++++|.+.+++++ ||++|+..
T Consensus 56 ~~~~~~~~YL~l~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~~~~~~-sG~~An~~ 129 (407)
T PRK07179 56 AIILQSNDYLNLSGHPDIIKAQIAALQ-EEGDSLVMSAVFLHDDSPKPQFEK----KLAAFTGFESCLLCQ-SGWAANVG 129 (407)
T ss_pred EEEeecCCccCCCCCHHHHHHHHHHHH-HhCCCCCccccccCCchHHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHH
Confidence 4467889998865 8999888885 4432222 2333344455566665 899999998776655 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
+++++..+||.|++... .|.+....+...|. ++++++. .|++++++.+++.++++|++++.+++ ...|
T Consensus 130 ~l~~l~~~g~~v~~~~~---~h~s~~~~~~~~g~--~~~~~~~-----~d~~~l~~~l~~~~~~lV~v~~v~n~tG~i~p 199 (407)
T PRK07179 130 LLQTIADPNTPVYIDFF---AHMSLWEGVRAAGA--QAHPFRH-----NDVDHLRRQIERHGPGIIVVDSVYSTTGTIAP 199 (407)
T ss_pred HHHHhCCCCCEEEEECC---cCHHHHHHHHHCCC--eEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCcccc
Confidence 99999999999997553 44444444445555 4444443 38999999997655777777655544 5559
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCcc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~ 257 (1342)
+++|.++|++||++||+||+|+.|..+.. . ..+....+|++++|+||++ |+.+|++++++++++.+.....+..
T Consensus 200 l~~I~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~vdi~~~S~sK~~-g~~~G~l~~~~~~~~~~~~~~~~~~ 278 (407)
T PRK07179 200 LADIVDIAEEFGCVLVVDESHSLGTHGPQGAGLVAELGLTSRVHFITASLAKAF-AGRAGIITCPRELAEYVPFVSYPAI 278 (407)
T ss_pred HHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHhcCCCCCCCEEEeechHhh-hccCeEEEeCHHHHHHHHHhCcCee
Confidence 99999999999999999999987654321 1 1111123589999999999 5668999999988888765444444
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHC
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~ 337 (1342)
++++..+...++..+..+... .....++++.++++++.+.|.+.|+++. ..++++++.++... ..+.+...|.++
T Consensus 279 ~~~t~~~~~~aa~~aal~~~~-~~~~~~~~l~~~~~~l~~~L~~~g~~v~---~~~~i~~l~~~~~~-~~~~~~~~L~~~ 353 (407)
T PRK07179 279 FSSTLLPHEIAGLEATLEVIE-SADDRRARLHANARFLREGLSELGYNIR---SESQIIALETGSER-NTEVLRDALEER 353 (407)
T ss_pred eCCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCCCC---CCCCEEEEEeCCHH-HHHHHHHHHHHC
Confidence 444433344333333344443 3345678999999999999999888764 23567777765322 234455555567
Q ss_pred CceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 338 NIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 338 GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
||.+.....|..+.. .+.+|++++..+|.+
T Consensus 354 GI~~~~~~~p~~~~~---~~~lRis~~~~~t~e 383 (407)
T PRK07179 354 NVFGAVFCAPATPKN---RNLIRLSLNADLTAS 383 (407)
T ss_pred CceEeeecCCCCCCC---CceEEEEECCCCCHH
Confidence 999776656655432 467999999887743
No 116
>PRK05957 aspartate aminotransferase; Provisional
Probab=99.89 E-value=3.1e-21 Score=232.34 Aligned_cols=342 Identities=13% Similarity=0.106 Sum_probs=230.9
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
++++....+..+..+....++....+.|..+.+. .++.+.+++...+.+. ....|....+..++.+++++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~a~~~~~~~~------~~~~Y~~~~G~~~lr~~~~~~l 78 (389)
T PRK05957 5 TSRMDAVQSPIIPVVGQLIRENPGTISLGQGVVSYPPPPEAIEALNNFLANP------ENHKYQAVQGIPPLLEAITQKL 78 (389)
T ss_pred hHHHHhcCCcHHHHHHHHHHhCCCeEEccCCCCCCCCCHHHHHHHHHHHhCC------CCCCCCCCCCCHHHHHHHHHHH
Confidence 3444444444444444444444455888877653 3334888877665321 1123444566678889899999
Q ss_pred HHHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHH
Q psy13354 83 KKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKV 158 (1342)
Q Consensus 83 a~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~L 158 (1342)
++++|.+ +.+++++|+++|+..++.+++.+||+|++.++.+..+ .......|. +++.++.++++.+|++++
T Consensus 79 ~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~P~y~~~---~~~~~~~g~--~~~~v~~~~~~~~d~~~l 153 (389)
T PRK05957 79 QQDNGIELNNEQAIVVTAGSNMAFMNAILAITDPGDEIILNTPYYFNH---EMAITMAGC--QPILVPTDDNYQLQPEAI 153 (389)
T ss_pred HHHhCCCCCCCCeEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcCH---HHHHHhcCC--EEEEeecCCCCCcCHHHH
Confidence 9998863 3566665888899999999999999999877555443 333455566 555556667788999999
Q ss_pred HHHHHhcCCeEEEEcCCCCC-c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----CcEEEecCC
Q psy13354 159 EYLAKKNKPKLIIAGASAYS-Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----ADFITSTTH 228 (1342)
Q Consensus 159 e~~i~~~~~~liv~~~s~~~-~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~Divv~S~s 228 (1342)
++.+++ +++++++++++|| + .. ++++|+++|+++|++||+||+|....+....+...... ..++++|+|
T Consensus 154 ~~~i~~-~~klv~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~S 232 (389)
T PRK05957 154 EQAITP-KTRAIVTISPNNPTGVVYPEALLRAVNQICAEHGIYHISDEAYEYFTYDGVKHFSPGSIPGSGNHTISLYSLS 232 (389)
T ss_pred HHhcCc-CceEEEEeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEeccchhccCCCCCccChhhCCCccCcEEEEecch
Confidence 998875 4556566566666 2 22 49999999999999999999987654432221221111 247889999
Q ss_pred ccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-Cc
Q psy13354 229 KSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GI 304 (1342)
Q Consensus 229 K~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~ 304 (1342)
|.+ |+.| ||+++++++++.+.........+ ++.+.+.++..++.+ ...++++..+++.++++.+.+.|++. ++
T Consensus 233 K~~-g~~GlRiG~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~ 309 (389)
T PRK05957 233 KAY-GFASWRIGYMVIPIHLLEAIKKIQDTILIC-PPVVSQYAALGALQV-GKSYCQQHLPEIAQVRQILLKSLGQLQDR 309 (389)
T ss_pred hhc-cCccceeEEEecCHHHHHHHHHHHhhcccC-CCcHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999 7777 99999999998887654333333 333445544444432 22356777788899999999999875 32
Q ss_pred -EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 305 -RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 305 -~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
.+ .++.+++++|+.++....+.+++..+++++||.+.++..++... .+++|++++..
T Consensus 310 ~~~-~~~~gg~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRis~~~~ 367 (389)
T PRK05957 310 CTL-HPANGAFYCFLKVNTDLNDFELVKQLIREYRVAVIPGTTFGMKN----GCYLRIAYGAL 367 (389)
T ss_pred ccc-cCCCeeEEEEEeCCCCCChHHHHHHHHHHCCEEEccchhhCCCC----CCEEEEEEecC
Confidence 33 33556789999987655566888888887899999876554332 35799999764
No 117
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=99.89 E-value=2.1e-21 Score=235.52 Aligned_cols=317 Identities=22% Similarity=0.272 Sum_probs=215.2
Q ss_pred eeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
...++++||++.. +++++.+.+. .+..+..+++.+ +....+.+|++ .+++++|.+++++++ +|++|+..
T Consensus 48 ~~~~~sn~yl~l~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~Le~----~la~~~g~~~~i~~~-sG~~a~~~ 121 (410)
T PRK13392 48 VTIWCSNDYLGMGQHPDVIGAMVDALD-RYGAGAGGTRNISGTSHPHVLLER----ELADLHGKESALLFT-SGYVSNDA 121 (410)
T ss_pred EEEEECCCccCCCCCHHHHHHHHHHHH-HcCCCCchhhhcccChHHHHHHHH----HHHHHhCCCCEEEEC-cHHHHHHH
Confidence 4467778887663 8999888774 555444444333 33334555665 899999988777777 99999999
Q ss_pred HHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC-
Q psy13354 105 VFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS- 178 (1342)
Q Consensus 105 al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~- 178 (1342)
++..+. .+||.|++....| .+....+...|..+.. ++.+ |.+.+++.+.. .++++|++++++++
T Consensus 122 ~i~~l~~~~~g~~vi~~~~~h---~s~~~~~~~~g~~~~~--~~~~-----d~~~l~~~l~~~~~~~t~~v~i~~~~n~t 191 (410)
T PRK13392 122 ALSTLGKLLPGCVILSDALNH---ASMIEGIRRSGAEKQV--FRHN-----DLADLEEQLASVDPDRPKLIAFESVYSMD 191 (410)
T ss_pred HHHHHhcCCCCCEEEEehhhh---HHHHHHHHHcCCeEEE--EeCC-----CHHHHHHHHHhccCCCCEEEEEeCCCCCC
Confidence 998775 3899887554333 3444445566664433 3333 55566665542 34567777666665
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhc
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~ 252 (1342)
...++++|.++|++||+++|+||+|+.|.++.. . .....+..|++++|+||+| |..|||+++++++++.++..
T Consensus 192 G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~g~g~~~~~~~~~~~div~~tlsK~~-g~~GG~~~~~~~~~~~l~~~ 270 (410)
T PRK13392 192 GDIAPIEAICDLADRYNALTYVDEVHAVGLYGARGGGIAERDGLMDRIDMIQGTLAKAF-GCLGGYIAASADLIDFVRSF 270 (410)
T ss_pred cccccHHHHHHHHHHcCCEEEEECCccccCcCCCCCchhhhccCCCCCcEEEEEChHhh-hcccchhhcCHHHHHHHHHh
Confidence 455999999999999999999999997765321 1 1122234689999999999 67789999999999988776
Q ss_pred cCCccccCCcHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 253 VFPGIQGGPLMHV-IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 253 ~~~~~~~~~~~~~-~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
..++.+++..++. ++++..++ +... ......+++.++++++.+.|.+.|+++.. +.++++.+.++......++..
T Consensus 271 ~~~~~~s~~~~~~~~~a~~aaL-~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~i~~~~~~~~~~~~~ 346 (410)
T PRK13392 271 APGFIFTTALPPAVAAGATAAI-RHLK-TSQTERDAHQDRVAALKAKLNANGIPVMP--SPSHIVPVMVGDPTLCKAISD 346 (410)
T ss_pred CcchhccCcCCHHHHHHHHHHH-HHHh-cCHHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCEEEEEeCCHHHHHHHHH
Confidence 5555444443433 34444444 4433 23345678899999999999998887643 445666666543222346677
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+++++||.+.+..+|..+.+ ..++|++++..++.+
T Consensus 347 ~L~~~~GI~v~~~~~p~~~~~---~~~lRis~~~~~t~e 382 (410)
T PRK13392 347 RLMSEHGIYIQPINYPTVPRG---TERLRITPTPLHDDE 382 (410)
T ss_pred HHHHhCCEEEeeeCCCCCCCC---CceEEEEECCCCCHH
Confidence 777777999999877766543 467999998887753
No 118
>PRK06108 aspartate aminotransferase; Provisional
Probab=99.89 E-value=4e-21 Score=231.32 Aligned_cols=320 Identities=10% Similarity=0.083 Sum_probs=221.5
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sGs~A 101 (1342)
...++|..+++..+ +.+.+++.+.+.+. ...|....+..++++++++++.+++| .+ +.+++++||++|
T Consensus 24 ~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a 96 (382)
T PRK06108 24 EGVLPLWFGESDLPTPDFIRDAAAAALADG-------ETFYTHNLGIPELREALARYVSRLHGVATPPERIAVTSSGVQA 96 (382)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHH
Confidence 35688888876554 34888877766421 12255556667899988889888878 33 445555588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+..++.+++++||+|++..+.|+.+ ...+...|..+..+++..+ .+|.+|++++++.+++ +++++++++++|| +
T Consensus 97 l~~~~~~l~~~gd~vl~~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~-~~~~i~l~~p~NPtG 172 (382)
T PRK06108 97 LMLAAQALVGPGDEVVAVTPLWPNL---VAAPKILGARVVCVPLDFGGGGWTLDLDRLLAAITP-RTRALFINSPNNPTG 172 (382)
T ss_pred HHHHHHHhcCCCCEEEEeCCCccch---HHHHHHCCCEEEEeeCCCCCCCccCCHHHHHHhcCc-cceEEEEECCCCCCC
Confidence 9999999999999999877655443 4445666774444443322 3467999999998865 4555566566666 2
Q ss_pred ----ccCHHHHHHHHHHcCCEEEEEcccchhhhh-cCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 180 ----YIDFERFYHIAKNINSYFMVDMAHYAGLIA-AGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 180 ----~~~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
..++++|+++|+++|++||+|++|....+. ....+.... ...++++|+||.+ |++| ||++++++++
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~~~~~ 251 (382)
T PRK06108 173 WTASRDDLRAILAHCRRHGLWIVADEVYERLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNW-AMTGWRLGWLVAPPALG 251 (382)
T ss_pred cccCHHHHHHHHHHHHHCCcEEEEehhhhhhccCCCCCCCCHhhcCCCcCCEEEEeechhhc-cCcccceeeeeCCHHHH
Confidence 226899999999999999999999876553 112221111 1347899999999 6556 9999999888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
+.+.... .+...+++.+.+.++..++.+ ...++++.++++.++++++.+.|.+. |+.+.. +.+++++|+.+++...
T Consensus 252 ~~~~~~~-~~~~~~~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-p~~g~~~~~~l~~~~~ 328 (382)
T PRK06108 252 QVLEKLI-EYNTSCVAQFVQRAAVAALDE-GEDFVAELVARLRRSRDHLVDALRALPGVEVAK-PDGAMYAFFRIPGVTD 328 (382)
T ss_pred HHHHHHH-HhcccCCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC-CCeeEEEEEeCCCCCC
Confidence 8876542 222233334455554444433 23366778889999999999999876 676643 4567889999876555
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 329 ~~~~~~~ll~~~gV~v~pg~~f~~~~----~~~~Ris~~~ 364 (382)
T PRK06108 329 SLALAKRLVDEAGLGLAPGTAFGPGG----EGFLRWCFAR 364 (382)
T ss_pred HHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEecC
Confidence 56788888888899998765543221 4679999887
No 119
>PLN02822 serine palmitoyltransferase
Probab=99.89 E-value=7.1e-21 Score=233.21 Aligned_cols=320 Identities=21% Similarity=0.233 Sum_probs=222.5
Q ss_pred ceeeeecCCC----CcHHHHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENY----TSLAVMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~----l~~~v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+++ ++.+| .+|.+.+++.+++. .|+.++.+++. |+..+.+.++++ .++++++.++.++++ +|..++.
T Consensus 111 ~id~-~s~~~lgl~~~~~i~ea~~~al~-~~G~g~~g~r~~yg~~~~~~~Lee----~La~~~~~~~~i~~s-~G~~a~~ 183 (481)
T PLN02822 111 VVNF-ASANYLGLIGNEKIKESCTSALE-KYGVGSCGPRGFYGTIDVHLDCET----KIAKFLGTPDSILYS-YGLSTIF 183 (481)
T ss_pred EEEe-ECCCcCCCCCCHHHHHHHHHHHH-HhCCCCcccCccccCHHHHHHHHH----HHHHHhCCCCEEEEC-CHHHHHH
Confidence 3544 44545 34569999999885 56656665544 566777777777 899999988888888 6766899
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---------cCCeEEEEcC
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---------NKPKLIIAGA 174 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---------~~~~liv~~~ 174 (1342)
.++.+++++||.|++.. ..|.+....+...+. +++.++++ |.++++..+.+ ..+++|++.+
T Consensus 184 sai~a~~~~gd~Ii~d~---~~H~s~~~~~~ls~~--~~~~~~~n-----d~~~l~~~l~~~~~~~~~~~~~~~~Ivve~ 253 (481)
T PLN02822 184 SVIPAFCKKGDIIVADE---GVHWGIQNGLYLSRS--TIVYFKHN-----DMESLRNTLEKLTAENKRKKKLRRYIVVEA 253 (481)
T ss_pred HHHHHhCCCCCEEEEeC---CccHHHHHHHHHcCC--eEEEECCC-----CHHHHHHHHHHHhhhhcccCCCcEEEEEec
Confidence 99999999999999554 344555445556665 55556665 44444443321 1235666644
Q ss_pred CC--CCcccCHHHHHHHHHHcCCEEEEEcccchhhhhc-C----CCCCC-CCCCcEEEecCCccCCCCCeeEEEEechhH
Q psy13354 175 SA--YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-G----EYPNP-VPFADFITSTTHKSLRGPRGGFILMKKKYK 246 (1342)
Q Consensus 175 s~--~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~----~~~~~-l~~~Divv~S~sK~l~gp~GG~iv~~~~l~ 246 (1342)
.. .+...++++|+++|++||++||+||+|++|.++. + .+.+. ....|++++|++|++ |+.|||++++++++
T Consensus 254 i~~~~G~i~~L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G~~e~~~v~~~~~dii~~s~sKal-g~~GG~i~g~~~ii 332 (481)
T PLN02822 254 IYQNSGQIAPLDEIVRLKEKYRFRVLLDESNSFGVLGKSGRGLSEHFGVPIEKIDIITAAMGHAL-ATEGGFCTGSARVV 332 (481)
T ss_pred CCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCChHHHcCCCCCCCeEEEecchhhh-hhCCeEEEcCHHHH
Confidence 22 2355689999999999999999999999887653 1 22222 124689999999999 88899999999999
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
+.++.....+.++++..+..++++.+..+.+. ...+..++++++++++.+.|.+. |+++.. +..++++++.+++..
T Consensus 333 ~~~~~~~~~~~fsa~lPp~~~~Aa~~aL~~l~-~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~~spi~~l~l~~~~~ 410 (481)
T PLN02822 333 DHQRLSSSGYVFSASLPPYLASAAITAIDVLE-DNPSVLAKLKENIALLHKGLSDIPGLSIGS-NTLSPIVFLHLEKSTG 410 (481)
T ss_pred HHHHhcCCceeeccccCHHHHHHHHHHHHHHH-hCHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCCCEEEEEeCCCcc
Confidence 99887666667765444444444433444443 22567889999999999999985 777643 456888988886431
Q ss_pred ----C---CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 325 ----I---TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 325 ----~---~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
. ..+++..+++++||++.+..+|...... .+.++|++++..++.
T Consensus 411 ~~~~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~-~~~~lRi~is~~~t~ 461 (481)
T PLN02822 411 SAKEDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCR-LPVGIRLFVSAGHTE 461 (481)
T ss_pred cccchHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCC-CCCcEEEEECCCCCH
Confidence 1 2467888887789999987665543211 124699998887664
No 120
>PRK09064 5-aminolevulinate synthase; Validated
Probab=99.88 E-value=4.4e-21 Score=232.71 Aligned_cols=319 Identities=24% Similarity=0.270 Sum_probs=216.4
Q ss_pred ceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+..++++||++.. +++++.+.+. .+..+..+++.+ +..+.+.++++ .+++++|.+.+++++ +|++|+.
T Consensus 47 ~~~~~~s~dylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~g~~~~~~~l~~----~la~~~g~~~~~~~~-sG~~an~ 120 (407)
T PRK09064 47 EVTVWCSNDYLGMGQHPKVIEAMIEALD-RCGAGAGGTRNISGTNHYHVELER----ELADLHGKEAALVFT-SGYVSND 120 (407)
T ss_pred eEEEEECCCCcCCCCCHHHHHHHHHHHH-HcCCCCCCcCcCccCHHHHHHHHH----HHHHHhCCCcEEEEC-cHHHHHH
Confidence 35578889997665 8888888774 454444444433 34555555555 888899977777777 9999999
Q ss_pred HHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC
Q psy13354 104 AVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~ 178 (1342)
.++..+.. +++.|+.....| .+....+...+.. ...++.+ |++++++.+.. .++++|++++.+++
T Consensus 121 ~ai~~l~~~~~~~~i~~~~~~h---~s~~~~~~~~~~~--~~~~~~~-----d~~~le~~l~~~~~~~~~~v~~~~v~s~ 190 (407)
T PRK09064 121 ATLSTLAKLIPDCVIFSDELNH---ASMIEGIRRSRCE--KHIFRHN-----DVAHLEELLAAADPDRPKLIAFESVYSM 190 (407)
T ss_pred HHHHHHhCCCCCCEEEEeCcch---HHHHHHHHHcCCc--EEEECCC-----CHHHHHHHHHhccCCCCeEEEEeCCCCC
Confidence 99888754 777666443333 3333333444543 3334433 78888887763 34567777665444
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...++++|.++|++||++||+||+|+.|.++. +. +.+..+..|++++||||+| |+.|||+++++++++.+..
T Consensus 191 ~G~~~~l~~i~~l~~~~~~~livDEa~~~G~~g~~g~g~~~~~~~~~~~div~~t~sKa~-g~~GG~~~~~~~~~~~l~~ 269 (407)
T PRK09064 191 DGDIAPIAEICDLADKYNALTYLDEVHAVGMYGPRGGGIAERDGLMDRIDIIEGTLAKAF-GVMGGYIAGSAALVDAVRS 269 (407)
T ss_pred CccccCHHHHHHHHHHcCCEEEEECCCcccccCCCCCChHHhcCCCCCCeEEEEecchhh-hccCceEecCHHHHHHHHH
Confidence 45599999999999999999999998775532 11 1112223589999999999 7788999999999888876
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...++.++++.++..++++.+..+..... ...++++.++++++.+.|.+.|+++.. +.++++++.++......++..
T Consensus 270 ~~~~~~~t~~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~iv~i~~~~~~~~~~l~~ 346 (407)
T PRK09064 270 YAPGFIFTTSLPPAIAAAALASIRHLKES-NEERERHQERAAKLKAALDAAGIPVMP--NESHIVPVMVGDPEKCKKASD 346 (407)
T ss_pred hCccccccCcCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCEEEEEeCCHHHHHHHHH
Confidence 55555444434444444444445554422 344678899999999999998887643 346677777654323456777
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+++++||.+.+..+|..+.+ ..++|++++..++.+
T Consensus 347 ~L~~~~gi~v~~~~~p~~~~~---~~~lRis~~~~~t~e 382 (407)
T PRK09064 347 MLLEEHGIYVQPINYPTVPRG---TERLRITPTPFHTDE 382 (407)
T ss_pred HHHHhCCEEEeeECCCCCCCC---CceEEEEeCCCCCHH
Confidence 777777999998877766533 467999999887743
No 121
>PRK12414 putative aminotransferase; Provisional
Probab=99.88 E-value=6.3e-21 Score=229.26 Aligned_cols=338 Identities=14% Similarity=0.172 Sum_probs=229.3
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
++....+.+...+.... +..+.+.+..+++.+ ++.+.+++.+.+... ...|+...+..++++++++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~l~~ 81 (384)
T PRK12414 10 KLPDVGTTIFTVIGQLA-AQHDALNLSQGAPNFAPDPALVEGVARAMRDG-------HNQYAPMAGIAALREALAEKTER 81 (384)
T ss_pred hcccCCccHHHHHHHHH-HhCCeEEcCCCCCCCCCCHHHHHHHHHHHHhC-------CCCcCCCCCcHHHHHHHHHHHHH
Confidence 34334444444443332 334568888877555 344777777665421 12355556677999999999999
Q ss_pred HhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHH
Q psy13354 85 IFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVE 159 (1342)
Q Consensus 85 ~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le 159 (1342)
++|.+ +.+++++||++|+..++.+++.|||+|+++.+.++. ........|. +++.++.+ +++.+|++.++
T Consensus 82 ~~g~~~~~~~~i~it~g~~~al~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~ 156 (384)
T PRK12414 82 LYGARYDPASEVTVIASASEGLYAAISALVHPGDEVIYFEPSFDS---YAPIVRLQGA--TPVAIKLSPEDFRVNWDEVA 156 (384)
T ss_pred HhCCCCCCCCcEEEECChHHHHHHHHHHhcCCCCEEEEeCCCccc---hHHHHHHcCC--EEEEEecCccccccCHHHHH
Confidence 88873 345555588999999999999999999987765544 3444455666 45555555 45789999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C---CCcEEEecCCc
Q psy13354 160 YLAKKNKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P---FADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~---~~Divv~S~sK 229 (1342)
+.+++ +++++++++++|| + ..++++|+++|++||++||+|++|....+......+.. . ...++++||||
T Consensus 157 ~~l~~-~~~~v~i~~p~NPTG~~~s~~~~~~i~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK 235 (384)
T PRK12414 157 AAITP-RTRMIIVNTPHNPSATVFSAADLARLAQLTRNTDIVILSDEVYEHVVFDGARHHSMARHRELAERSVIVSSFGK 235 (384)
T ss_pred hhcCc-ccEEEEEcCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEhhhhhhccCCCCCccCcccCcCccCcEEEEecccc
Confidence 98865 5667777666666 2 23799999999999999999999986544322221111 1 12488999999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.| |.+| ||+++++++++.+.........+ .+.+.+.++...+.. . ..+...++.+.++++.+.+.|++.|+.+
T Consensus 236 ~~-~~pGlRiG~~v~~~~l~~~l~~~~~~~~~~-~s~~~q~a~~~~l~~-~-~~~~~~~~~~~~~r~~l~~~L~~~g~~~ 311 (384)
T PRK12414 236 SY-HVTGWRVGYCLAPAELMDEIRKVHQFMVFS-ADTPMQHAFAEALAE-P-ASYLGLGAFYQRKRDLLARELAGSRFEL 311 (384)
T ss_pred cc-cCccceEEEEecCHHHHHHHHHHHhheecC-CCcHHHHHHHHHhcC-C-hHHHHHHHHHHHHHHHHHHHHHhCCCee
Confidence 99 6667 99999999888877643222222 334455555444322 2 2344567888999999999999988776
Q ss_pred eeCCCCCeEEEEEccC--CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRN--KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. ++.+++++|+++++ ...+.+++..+++++||.+.++..++.... ..+++|++++.
T Consensus 312 ~-~~~gg~~~~~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~--~~~~iRis~~~ 369 (384)
T PRK12414 312 L-PSEGSFFMLARFRHFSDESDSDFVLRLIRDARVATIPLSAFYTDGT--DTGLIRLSFSK 369 (384)
T ss_pred c-CCCcceEEEEcccccCCCCHHHHHHHHHHhCCEEEecchhhcCCCC--CCCEEEEEecC
Confidence 4 35677888888864 224567887888888999998765543221 13579999985
No 122
>PLN00175 aminotransferase family protein; Provisional
Probab=99.88 E-value=5.3e-21 Score=231.52 Aligned_cols=338 Identities=13% Similarity=0.078 Sum_probs=231.2
Q ss_pred ccccchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
+....+..+..+..... ..+.++|..+.... ++.+.+++.+.+.+. ...|+...+..+|++++++++.+.
T Consensus 36 ~~~~~~~~~~~~~~~~~-~~~~i~l~~G~P~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~Lr~aia~~~~~~ 107 (413)
T PLN00175 36 LEKFKTTIFTQMSSLAI-KHGAINLGQGFPNFDGPDFVKEAAIQAIRDG-------KNQYARGFGVPELNSAIAERFKKD 107 (413)
T ss_pred hhcCCCCHHHHHHHHhh-cCCeEecCCCCCCCCCCHHHHHHHHHHHhcC-------CCCcCCCCCCHHHHHHHHHHHHHH
Confidence 33344444444433322 23567777766432 444788877776421 123555666779999888888887
Q ss_pred hCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHH
Q psy13354 86 FNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEY 160 (1342)
Q Consensus 86 ~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~ 160 (1342)
+|.+ + .+++++|+++|+..++.++++|||+|++..+.++. +...+...|..+ ++++.+ +++.+|++.+++
T Consensus 108 ~g~~~~~~~~I~vt~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~---~~~~~~~~g~~~--~~v~~~~~~~~~~~~~l~~ 182 (413)
T PLN00175 108 TGLVVDPEKEVTVTSGCTEAIAATILGLINPGDEVILFAPFYDS---YEATLSMAGAKI--KTVTLRPPDFAVPEDELKA 182 (413)
T ss_pred hCCCCCCCCCEEEeCCHHHHHHHHHHHhCCCCCEEEEeCCCchh---HHHHHHHcCCEE--EEEECCcccCCCCHHHHHH
Confidence 7753 2 46666588899999999999999999987755543 444556677744 444554 357899999999
Q ss_pred HHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCcc
Q psy13354 161 LAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKS 230 (1342)
Q Consensus 161 ~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~ 230 (1342)
.+.+ +++++++++++|| ...++++|+++|++||++||+||+|....+.. .+.+... ...++++||||.
T Consensus 183 ~~~~-~~k~i~i~~p~NPtG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~~~-~~~s~~~~~~~~~~vi~i~SfSK~ 260 (413)
T PLN00175 183 AFTS-KTRAILINTPHNPTGKMFTREELELIASLCKENDVLAFTDEVYDKLAFEG-DHISMASLPGMYERTVTMNSLGKT 260 (413)
T ss_pred hcCc-CceEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEecccCccccCC-cccChhhCCCCcCcEEEEecchhh
Confidence 8876 4566677676776 22368899999999999999999997665432 2221111 135888999999
Q ss_pred CCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 231 LRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 231 l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
| +.+| ||+++++++++.+....... ..+.+.+.+.++..++.. ...++++.++.+.++++.+.+.|.+.|+.+.
T Consensus 261 ~-~~~G~RiG~~v~~~~l~~~l~~~~~~~-~~~~s~~~Q~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 337 (413)
T PLN00175 261 F-SLTGWKIGWAIAPPHLTWGVRQAHSFL-TFATATPMQWAAVAALRA-PESYYEELKRDYSAKKDILVEGLKEVGFKVY 337 (413)
T ss_pred c-cCcchheeeeEeCHHHHHHHHHHHhhc-cCCCCHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHHCCCeec
Confidence 9 6667 99999999988887643222 223445666666555533 2346788889999999999999999888764
Q ss_pred eCCCCCeEEEEEccCCC--CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKK--ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~--~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. +.+++++|++++..+ .+.+++..+++++||.+.|+..++.... ...+++|++++.
T Consensus 338 ~-p~g~~f~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~-~~~~~iRls~~~ 395 (413)
T PLN00175 338 P-SSGTYFVMVDHTPFGFENDIAFCEYLIEEVGVAAIPPSVFYLNPE-DGKNLVRFAFCK 395 (413)
T ss_pred C-CCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCC-CCCCEEEEEEcC
Confidence 3 567889999985422 2467888888888999998765532110 013579999984
No 123
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=99.88 E-value=8.7e-21 Score=226.14 Aligned_cols=315 Identities=17% Similarity=0.148 Sum_probs=216.9
Q ss_pred eeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHH
Q psy13354 31 ELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 31 ~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~a 108 (1342)
.+.+++..+++.+.+++.+.+. .+ ..+...++.+++++.+++++|.+ ..+++++||++|+..++.+
T Consensus 2 ~~~~~~~~~~~~v~~a~~~~~~-----~~-------~~~~~~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~ 69 (356)
T cd06451 2 LLIPGPSNVPPRVLKAMNRPML-----GH-------RSPEFLALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSN 69 (356)
T ss_pred cccCCCcCCCHHHHHHhCCCcc-----CC-------CCHHHHHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHH
Confidence 5788999999999999764431 11 11123455666888999999984 4466676889999999999
Q ss_pred ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 109 VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
++.+||+|++....+.+. .........|..+.. ++.++++.+|++++++.++++++++++++.++++ ...|+++|
T Consensus 70 ~~~~g~~vl~~~~~~~~~-~~~~~~~~~g~~~~~--v~~~~~~~~~~~~l~~~i~~~~~~~v~i~~~~~~~G~~~~~~~i 146 (356)
T cd06451 70 LLEPGDKVLVGVNGVFGD-RWADMAERYGADVDV--VEKPWGEAVSPEEIAEALEQHDIKAVTLTHNETSTGVLNPLEGI 146 (356)
T ss_pred hCCCCCEEEEecCCchhH-HHHHHHHHhCCCeEE--eecCCCCCCCHHHHHHHHhccCCCEEEEeccCCCcccccCHHHH
Confidence 999999999766433221 123345566764444 4556567899999999998756677666555444 55599999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhh--ccCC-------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINS--AVFP------- 255 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~--~~~~------- 255 (1342)
.++|+++|+++++|++|++|... .+... .+|++++|+|||+++|.| |+++.++++++.+.. ....
T Consensus 147 ~~~a~~~~~~li~D~~~~~g~~~----~~~~~~~~d~~~~s~~K~l~~p~g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (356)
T cd06451 147 GALAKKHDALLIVDAVSSLGGEP----FRMDEWGVDVAYTGSQKALGAPPGLGPIAFSERALERIKKKTKPKGFYFDLLL 222 (356)
T ss_pred HHHHHhcCCEEEEeeehhccCcc----ccccccCccEEEecCchhccCCCCcceeEECHHHHHHHHhcCCCCceeecHHH
Confidence 99999999999999999876431 11111 368999999999987878 999999988877653 1111
Q ss_pred ---------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEccCCC
Q psy13354 256 ---------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLRNKK 324 (1342)
Q Consensus 256 ---------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~~~~ 324 (1342)
+..++++.+...++.+++......+++...++..++++++.+.|.+.|+++..++. ...+.|+.+++..
T Consensus 223 ~~~~~~~~~~~~~t~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 302 (356)
T cd06451 223 LLKYWGEGYSYPHTPPVNLLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLKLLAKPELRSPTVTAVLVPEGV 302 (356)
T ss_pred HHhhhcccCCCCCCChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCCceEEEECCCCC
Confidence 12234444445555556555444467778889999999999999998988764322 2234566665433
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
...+++..+.++.||.+.++..+.. .+++|++++..++.+
T Consensus 303 ~~~~~~~~L~~~~gI~~~~g~~~~~------~~~iRis~~~~~~~e 342 (356)
T cd06451 303 DGDEVVRRLMKRYNIEIAGGLGPTA------GKVFRIGHMGEATRE 342 (356)
T ss_pred CHHHHHHHHHHhCCEEEeccccccc------CCEEEEecCCCCCHH
Confidence 3445565665545999987643321 347999999886643
No 124
>PRK05942 aspartate aminotransferase; Provisional
Probab=99.88 E-value=8.6e-21 Score=229.02 Aligned_cols=320 Identities=13% Similarity=0.106 Sum_probs=217.3
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~A 101 (1342)
+.+.+..++... ++.+.+++...+... ....|+...+..++++++++++.+.+|.+ + .+++++|+++|
T Consensus 36 ~~i~l~~g~p~~~~p~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~a 109 (394)
T PRK05942 36 DLIDLGMGNPDGAAPQPVIEAAIAALADP------QNHGYPPFEGTASFRQAITDWYHRRYGVELDPDSEALPLLGSKEG 109 (394)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhCC------CCccCCCCCCCHHHHHHHHHHHHHHHCCCcCCCCeEEEccChHHH
Confidence 457776654332 333667666655311 11235555666789998888888776742 2 35556588889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
+..++.+++.|||+|+++.+.++.+. ..+...|..+..++++.+++|.+|++++++.+.+ +++++++++++|| +.
T Consensus 110 l~~~~~~~~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~P~NPtG~ 185 (394)
T PRK05942 110 LTHLALAYVNPGDVVLVPSPAYPAHF---RGPLIAGAQIYPIILKPENDWLIDLSSIPEEVAQ-QAKILYFNYPSNPTTA 185 (394)
T ss_pred HHHHHHHhCCCCCEEEEcCCCCcchH---HHHHHcCCEEEEeecCCccCCccCHHHHHHhccc-cceEEEEcCCCCCCCC
Confidence 99999999999999998876665543 3334566644444333234567999999988865 5677777666666 22
Q ss_pred -c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC---CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 181 -I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP---FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 181 -~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
. .+++|+++|++||++||+||+|....+......+. +. ...++++||||.| |.+| ||+++++++++.
T Consensus 186 ~~s~~~~~~i~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~~GlRiG~i~~~~~l~~~ 264 (394)
T PRK05942 186 TAPREFFEEIVAFARKYEIMLVHDLCYAELAFDGYQPTSLLEIPGAKDIGVEFHTLSKTY-NMAGWRVGFVVGNRHIIQG 264 (394)
T ss_pred cCCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCCChhhCCCccccEEEEecchhcc-CChhhheeeeecCHHHHHH
Confidence 2 48899999999999999999987655422221211 11 1347789999999 6666 999999999888
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
+......... +...+.+.++..++ +....+.++.++++.++++++.+.|.+.|+.+.. +.+++++|+.++....+.+
T Consensus 265 l~~~~~~~~~-~~~~~~q~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~f~~~~~~~~~~~~~ 341 (394)
T PRK05942 265 LRTLKTNLDY-GIFSALQKAAETAL-QLPDSYLQQVQERYRTRRDFLIQGLGELGWNIPP-TKATMYLWVPCPVGMGSTD 341 (394)
T ss_pred HHHHHhhccc-CCCHHHHHHHHHHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCeeeEEEEECCCCCCHHH
Confidence 8764332222 23344445444444 3333467778889999999999999988887643 4567799999876544567
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++..+++++||.+.++..++... .+++|++++.
T Consensus 342 ~~~~~l~~~gV~v~~g~~f~~~~----~~~iRis~~~ 374 (394)
T PRK05942 342 FALNVLQKTGVVVTPGNAFGEGG----EGYVRISLIA 374 (394)
T ss_pred HHHHHHHHCCEEEeCChhhCcCC----CCeEEEEecC
Confidence 77788888899998876554322 3579999963
No 125
>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.
Probab=99.88 E-value=1.3e-20 Score=226.92 Aligned_cols=319 Identities=14% Similarity=0.100 Sum_probs=220.6
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~ 100 (1342)
.+.+.+..+++.+ ++.+.+++.+.+.... ...|+...+..++++++++++.+.+|.+ ..+++++|+++
T Consensus 29 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~ 102 (383)
T TIGR03540 29 VDVISLGIGDPDLPTPKHIVEALCKAAENPE------NHRYPSYEGMLAYRQAVADWYKRRFGVELDPETEVLSLIGSKE 102 (383)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHHHHHHHhhCCCCCCCCeEEECCCcHH
Confidence 3557787776553 3447788776653211 1224444556788898888887766653 24566657888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++..++.+++++||+|+++.+.++.+ .......|. ++++++.+ ..+.+|++++++.+.+ +++++++++++||
T Consensus 103 ~l~~~~~~~~~~gd~vlv~~P~y~~~---~~~~~~~G~--~v~~v~~~~~~g~~~d~~~l~~~~~~-~~~~v~i~~P~NP 176 (383)
T TIGR03540 103 GIAHIPLAFVNPGDIVLVPDPGYPVY---RIGTLFAGG--EPYEMPLKEENGFLPDFDAIPEDIAK-KAKLMFINYPNNP 176 (383)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCcch---HHHHHhcCC--EEEEEecCcccCCccCHHHHHhhccc-cceEEEEeCCCCC
Confidence 99999999999999999877666544 334456676 44444554 3467899999988764 5677777766666
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC---CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP---FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+...+++|+++|++||++||+||+|....+......+. ++ ...++++||||+| |..| ||+++++++
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~i~~~~l 255 (383)
T TIGR03540 177 TGAVAPLKFFKELVEFAKEYNIIVCHDNAYSEITFDGYKAPSFLEVDGAKDVGIEFHSLSKTY-NMTGWRIGMAVGNADL 255 (383)
T ss_pred cCccCCHHHHHHHHHHHHHcCEEEEEecchhhhccCCCCCcCcccCCCcccCEEEEEeccccc-CCccceeeEEeCCHHH
Confidence 22248999999999999999999997654432222221 11 1347789999999 7777 999999998
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
++.+....... ..++..+.+.++..++.. ...+.++.++.+.++++.+.+.|++.|+.+.. +.+++++|+.+++...
T Consensus 256 ~~~~~~~~~~~-~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~~~~~~~~~~l~~~~~ 332 (383)
T TIGR03540 256 IAGLGKVKTNV-DSGVFQAIQYAAIAALNG-PQDVVKEIRKIYQRRRDLLLEALKKIGIDVEK-PKATFYVWVPVPEGYT 332 (383)
T ss_pred HHHHHHHHHhc-ccCCChHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCEecC-CCcceEEEEECCCCCC
Confidence 88876543222 223334555555444433 23467788889999999999999999887643 4567889999976545
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.++...+++++||.+.++..++... .+++|++++.
T Consensus 333 ~~~~~~~ll~~~gi~v~~g~~f~~~~----~~~~Ris~~~ 368 (383)
T TIGR03540 333 SAEFAARLLEETGVVVTPGVGFGEYG----EGYIRISLTV 368 (383)
T ss_pred HHHHHHHHHHHCCEEEecchhhCccC----CCeEEEEecC
Confidence 66788888888899999876554322 3579999874
No 126
>PRK08068 transaminase; Reviewed
Probab=99.88 E-value=9.8e-21 Score=228.22 Aligned_cols=319 Identities=14% Similarity=0.049 Sum_probs=219.1
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~-~vi~~~sGs~ 100 (1342)
.+.+.+..++...+ +.+.+++.+.+.... ...|+...+..+|++++++++.+.+|. + + .+++++||++
T Consensus 32 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~g~~~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~ 105 (389)
T PRK08068 32 HDVINLGQGNPDQPTPEHIVEALQEAAENPA------NHKYSPFRGYPFLKEAAADFYKREYGVTLDPETEVAILFGGKA 105 (389)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 34577877753332 347777776664211 122444556678999888887766664 2 3 4556658888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++..++.+++++||+|+++.+.++.+ ...+...|.. ++.++.+ .++.+|++++++.+.+ +++++++++|+||
T Consensus 106 ~l~~~~~~~~~~gd~vlv~~P~y~~~---~~~~~~~g~~--~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~P~NP 179 (389)
T PRK08068 106 GLVELPQCLMNPGDTILVPDPGYPDY---LSGVALARAQ--FETMPLIAENNFLPDYTKIPEEVAE-KAKLMYLNYPNNP 179 (389)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHhcCCE--EEEeecccccCCCCCHHHHHHhccc-cceEEEEECCCCC
Confidence 99999999999999999877665544 3444566764 4444554 3577899999988864 5677777766666
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
....+++|+++|++||++||+||+|....+......+... ...++++||||.| |.+| ||+++++++
T Consensus 180 TG~~~s~~~~~~l~~la~~~~~~ii~Deay~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~l 258 (389)
T PRK08068 180 TGAVATKAFFEETVAFAKKHNIGVVHDFAYGAIGFDGQKPVSFLQTPGAKDVGIELYTLSKTF-NMAGWRVAFAVGNESV 258 (389)
T ss_pred CCCcCCHHHHHHHHHHHHHcCeEEEEehhhhhhccCCCCCcChhhCCCccCCEEEEecchhcc-CCccceeEeEecCHHH
Confidence 2235789999999999999999998654332211112111 1348889999999 7677 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
++.+......+..+. ..+.+.++..++.+. ..+++..++++.++++++.+.|++.|+.+. ++.+++++|+.+++...
T Consensus 259 ~~~l~~~~~~~~~~~-~~~~q~~~~~~l~~~-~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~-~~~g~~~~~v~~~~~~~ 335 (389)
T PRK08068 259 IEAINLLQDHLFVSL-FGAIQDAAIEALLSD-QSCVAELVARYESRRNAFISACREIGWEVD-APKGSFFAWMPVPKGYT 335 (389)
T ss_pred HHHHHHHHhhccCCC-ChHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCeeEEEEEECCCCCC
Confidence 888876544443333 233444444444322 246778899999999999999999888653 35667889999976545
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.++...+++++||.+.++..++..+ .+++|++++.
T Consensus 336 ~~~~~~~l~~~~gi~v~pg~~f~~~~----~~~iRi~~~~ 371 (389)
T PRK08068 336 SEQFADLLLEKAHVAVAPGNGFGEHG----EGYVRVGLLT 371 (389)
T ss_pred HHHHHHHHHHhCCEEEecchHhCccC----CCeEEEEEcC
Confidence 66777888877899999876554322 3579999964
No 127
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=99.88 E-value=1.1e-20 Score=228.96 Aligned_cols=319 Identities=22% Similarity=0.252 Sum_probs=216.9
Q ss_pred ceeeeecCCCCcHH----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+..++++||+++. +++++.+.+. .+..+..+++.. +..+.+.++++ .+++++|.+.+++++ ||++|+.
T Consensus 46 ~~~~~~sn~ylgl~~~p~v~~a~~~~~~-~~~~~~~~s~~~~~~~~~~~~le~----~la~~~g~~~~~~~~-SG~~An~ 119 (406)
T PRK13393 46 EVTVWCSNDYLGMGQHPAVLAAMHEALD-TCGAGAGGTRNISGTNHYHVLLEA----ELADLHGKEAALLFT-SGYVSNW 119 (406)
T ss_pred cEEEeecccccCCCCCHHHHHHHHHHHH-HcCCCCcccccccCChHHHHHHHH----HHHHHhCCCcEEEeC-CcHHHHH
Confidence 35568889998874 9999888885 565444444433 22334445554 899999988887888 9999999
Q ss_pred HHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC
Q psy13354 104 AVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~ 178 (1342)
.++.++.. +||.|+.....|+ +....+...|. ....++.. |++++++.+.. .++++|++++.+++
T Consensus 120 ~ai~~l~~~~~g~~I~~~~~~H~---s~~~~~~~~g~--~~~~~~~~-----d~~~l~~~l~~~~~~~~~~v~~~~v~~~ 189 (406)
T PRK13393 120 AALSTLGSRLPGCVILSDELNHA---SMIEGIRHSRA--EKRIFRHN-----DPADLERKLSDLDPHRPKLVAFESVYSM 189 (406)
T ss_pred HHHHHhhcCCCCCEEEEccchhH---HHHHHHHHcCC--eEEEeCCC-----CHHHHHHHHHhccCCCCEEEEEcCCCCC
Confidence 99998755 7887775554443 33333444555 33334443 77888877753 24566666554433
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...|+++|.++|++||+++|+||+|+.|.++.. . ..+..+..|++++|++|++ |..|||+++++++++.+..
T Consensus 190 ~G~~~~l~~i~~l~~~~~~~livDea~~~g~~g~~G~g~~~~~~~~~~~~i~~~tlsKa~-g~~GG~~~~~~~~~~~l~~ 268 (406)
T PRK13393 190 DGDIAPIAEICDVAEKHGAMTYLDEVHAVGLYGPRGGGIAEREGLADRLTIIEGTLAKAF-GVMGGYITGSAALCDFIRS 268 (406)
T ss_pred CCchhCHHHHHHHHHHcCCEEEEECCccccccCCCCCchhhhcCCCCCCeEEEEeCchhh-cccCceeeCCHHHHHHHHH
Confidence 555999999999999999999999997765431 1 1111223588899999999 7788999999999888877
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...++.++++.++..++++.+..+...... ..+.++.++++++.+.|.+.|+++.. ..++++.+.+.+.....++..
T Consensus 269 ~~~~~~~t~~~~p~~~aa~~aaL~~~~~~~-~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~i~~v~~~~~~~~~~l~~ 345 (406)
T PRK13393 269 FASGFIFTTSLPPAVAAGALASVRHLKASS-AERERHQDRVARLRARLDKAGIPHLP--NPSHIVPVMVGDPVLCKQISD 345 (406)
T ss_pred hCcCceecCccCHHHHHHHHHHHHHHhhCH-HHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCeEEEEeCCHHHHHHHHH
Confidence 655555544445544444444444443232 23467788899999999988877543 345666666543222346667
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+++++||++.+..+|..+.+ ..++|++++..++.+
T Consensus 346 ~L~~~~Gi~v~~~~~p~~p~g---~~~iRis~~~~~t~e 381 (406)
T PRK13393 346 ELLDRYGIYVQPINYPTVPRG---TERLRITPSPLHTDA 381 (406)
T ss_pred HHHHhCCEEEEeECCCCCCCC---CceEEEEECCCCCHH
Confidence 777767999999877776643 467999999887753
No 128
>PRK07366 succinyldiaminopimelate transaminase; Validated
Probab=99.88 E-value=1.1e-20 Score=227.80 Aligned_cols=321 Identities=10% Similarity=0.047 Sum_probs=219.1
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~-~vi~~~sGs~ 100 (1342)
.+.+.+..+++.++ +.+.+++.+.+.... ...|....+..+|++++++++.+.+|. + + .+++++|+++
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~ 103 (388)
T PRK07366 30 KELIDLSLGSSDLPAPAHALEAIAQSLHDPS------THGYLLFHGTLDFREAAAQWYEQRFGLAVDPETEVLPLIGSQE 103 (388)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhCcc------cCCCCCCCCCHHHHHHHHHHHHHhhCCcCCCcCeEEECCCcHH
Confidence 45688888876544 347777776653211 112444455678999888888777664 3 3 4666657788
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
|+..++.+++.|||+|++..+.++.+ ...+...|..+..+++..+..+.+|++++++.+.+ +++++++++++||
T Consensus 104 al~~~~~~l~~~gd~Vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~p~NPTG 179 (388)
T PRK07366 104 GTAHLPLAVLNPGDFALLLDPGYPSH---AGGVYLAGGQIYPMPLRAENDFLPVFADIPTEVLA-QARLMVLSYPHNPTT 179 (388)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHhcCCEEEEEECCCccCCCCCHHHHHHhhcc-cceEEEEeCCCCCCC
Confidence 99999999999999999777555544 44446667744444433223467889998877654 4677777777777
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC-CCCCCCC-----CcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-YPNPVPF-----ADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-~~~~l~~-----~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
+...+++|+++|++||++||+||+|....+.... .++.... ..++++||||++ |.+| ||++++++++
T Consensus 180 ~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~li 258 (388)
T PRK07366 180 AIAPLSFFQEAVAFCQQHDLVLVHDFPYVDLVFDGEVEPPSILQADPEKSVSIEFFTLSKSY-NMGGFRIGFAIGNAQLI 258 (388)
T ss_pred ccCCHHHHHHHHHHHHHcCeEEEEecchhhcccCCCCCCCChhhCCCCcccEEEEeeccccc-CCcchhheehcCCHHHH
Confidence 3336888999999999999999999865543221 2222111 236789999999 6666 9999999998
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC--
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK-- 324 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~-- 324 (1342)
+.+......+..+++ +..+.++..++... ..++++.++.+.++++++.+.|++.|+.+. .+.+++++|+.+++..
T Consensus 259 ~~l~~~~~~~~~~~~-~~~~~~a~~~l~~~-~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~g~f~~~~~~~~~~~ 335 (388)
T PRK07366 259 QALRQVKAVVDFNQY-RGILNGAIAALTGP-QATVQQTVQIFRQRRDAFINALHQIGWPVP-LPEATMYVWAKLPEPWQG 335 (388)
T ss_pred HHHHHHHhhcccCCC-HHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCeeEEEEEECCcccCC
Confidence 888765444443332 22333333344322 347788889999999999999998887643 3567899999997642
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 336 ~~~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 372 (388)
T PRK07366 336 NSVEFCTQLVAQTGVAASPGSGFGKSG----EGYVRFALVH 372 (388)
T ss_pred CHHHHHHHHHHhCCEEEeCchHhCcCC----CCeEEEEecC
Confidence 245677788888899999876554322 3579999874
No 129
>PRK07337 aminotransferase; Validated
Probab=99.88 E-value=1.5e-20 Score=226.67 Aligned_cols=320 Identities=10% Similarity=0.087 Sum_probs=216.4
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+.+..+++.+ ++.+.+++.+.+.+. . ..|....+..++++++++++...+|.. +.+++++|+++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-~------~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~t~G~~~a 102 (388)
T PRK07337 30 RDIIHMGIGEPDFTAPEPVVEAAARALRRG-V------TQYTSALGLAPLREAIAAWYARRFGLDVAPERIVVTAGASAA 102 (388)
T ss_pred CCEEEeCCcCCCCCCCHHHHHHHHHHHhcC-C------CCCCCCCCCHHHHHHHHHHHHHHhCCCCChHhEEEecCcHHH
Confidence 3557787776543 445788877766421 1 124444556788888888887766753 445555588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++++||+|+++.+.++.+ ...+...|.. ++.++.+ .++.+|++++++.+.+.++. +++++++||
T Consensus 103 l~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-v~l~~p~NPt 176 (388)
T PRK07337 103 LLLACLALVERGDEVLMPDPSYPCN---RHFVAAAEGR--PVLVPSGPAERFQLTAADVEAAWGERTRG-VLLASPSNPT 176 (388)
T ss_pred HHHHHHHhcCCCCEEEEeCCCchhh---HHHHHHcCCE--EEEeecCCccCCcCCHHHHHhhcCccceE-EEEECCCCCC
Confidence 9999999999999999887666554 3334555664 4444554 45789999999988764444 444555555
Q ss_pred c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-Cc-EEEecCCccCCCCCe---eEEEEechhHHHH
Q psy13354 179 Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-AD-FITSTTHKSLRGPRG---GFILMKKKYKKII 249 (1342)
Q Consensus 179 ~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~D-ivv~S~sK~l~gp~G---G~iv~~~~l~~~l 249 (1342)
+ ..++++|+++|+++|+++|+|++|....+ .+...+.... .+ ++++|+||.+ |.+| ||+++++++++.+
T Consensus 177 G~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~~~~~~l~~~l 254 (388)
T PRK07337 177 GTSIAPDELRRIVEAVRARGGFTIVDEIYQGLSY-DAAPVSALSLGDDVITINSFSKYF-NMTGWRLGWLVVPEALVGTF 254 (388)
T ss_pred CcCcCHHHHHHHHHHHHHCCCEEEEecccccccc-CCCCcChhhccCCEEEEEechhhc-CCchhheeeeecCHHHHHHH
Confidence 2 23689999999999999999999874333 2212222221 12 5688999999 6566 9999999888887
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-----C
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-----K 324 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-----~ 324 (1342)
......+..+ .+.+.+.++..++.......+++.++.+.++++++.+.|++.|+.+...+.+++++|++++.. .
T Consensus 255 ~~~~~~~~~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~ 333 (388)
T PRK07337 255 EKLAQNLFIC-ASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALESLGFKVPVMPDGAFYVYADCRGVAHPAAG 333 (388)
T ss_pred HHHHHHhccC-CChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHhcCCccccCCCeeEEEEEecccccCCCCC
Confidence 6643333322 334455554444432211246667888899999999999988876433456789999999752 2
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+++..+++++||.+.++..++.... .+++|++++.
T Consensus 334 ~~~~~~~~ll~~~gv~v~pg~~f~~~~~---~~~~Ri~~~~ 371 (388)
T PRK07337 334 DSAALTQAMLHDAGVVLVPGRDFGPHAP---RDYIRLSYAT 371 (388)
T ss_pred CHHHHHHHHHHhCCEEEeCchhhCCCCC---CCEEEEEecC
Confidence 3456777888888999998766654322 4689999986
No 130
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=1e-21 Score=207.65 Aligned_cols=197 Identities=24% Similarity=0.347 Sum_probs=147.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
..+++...||++|+|++||++++..+.-.++ .+...+.+|||||||+||||+|+.+|+++++
T Consensus 11 ~~~l~~~lRP~~L~efiGQ~~l~~~l~i~i~aa~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~-------------- 76 (233)
T PF05496_consen 11 EAPLAERLRPKSLDEFIGQEHLKGNLKILIRAAKKRGEALDHMLFYGPPGLGKTTLARIIANELGV-------------- 76 (233)
T ss_dssp -S-HHHHTS-SSCCCS-S-HHHHHHHHHHHHHHHCTTS---EEEEESSTTSSHHHHHHHHHHHCT---------------
T ss_pred chhhHHhcCCCCHHHccCcHHHHhhhHHHHHHHHhcCCCcceEEEECCCccchhHHHHHHHhccCC--------------
Confidence 3468899999999999999999988765443 2333345899999999999999999999974
Q ss_pred CCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP------ 527 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~------ 527 (1342)
++...++.......++..++..+ .+..|++|||+|.|++..++.|+.++|+..
T Consensus 77 ---------------~~~~~sg~~i~k~~dl~~il~~l------~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG 135 (233)
T PF05496_consen 77 ---------------NFKITSGPAIEKAGDLAAILTNL------KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIG 135 (233)
T ss_dssp ----------------EEEEECCC--SCHHHHHHHHT--------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBS
T ss_pred ---------------CeEeccchhhhhHHHHHHHHHhc------CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEec
Confidence 35555554444455666665543 345699999999999999999999999731
Q ss_pred ------------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcH
Q psy13354 528 ------------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSM 594 (1342)
Q Consensus 528 ------------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~l 594 (1342)
+...+|.+|++...+.+++++|+ .+.++..++.+++.+++.+.+...++.++++++..||+++.|.+
T Consensus 136 ~g~~ar~~~~~l~~FTligATTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrGtP 215 (233)
T PF05496_consen 136 KGPNARSIRINLPPFTLIGATTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRGTP 215 (233)
T ss_dssp SSSS-BEEEEE----EEEEEESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTTSH
T ss_pred cccccceeeccCCCceEeeeeccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCCCh
Confidence 34668999999999999999999 56689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcC
Q psy13354 595 RDALSLTDQAINYSS 609 (1342)
Q Consensus 595 r~a~~~L~kl~~~~~ 609 (1342)
|-|.++|..+-.|+.
T Consensus 216 RiAnrll~rvrD~a~ 230 (233)
T PF05496_consen 216 RIANRLLRRVRDFAQ 230 (233)
T ss_dssp HHHHHHHHHHCCCCC
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877763
No 131
>PRK07682 hypothetical protein; Validated
Probab=99.87 E-value=1.6e-20 Score=225.64 Aligned_cols=319 Identities=15% Similarity=0.103 Sum_probs=219.7
Q ss_pred cCceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHH
Q psy13354 27 NNNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~ 100 (1342)
...+.+..+++..++ .+.+++.+.+.+.+ ..|....+..++++++++++.+.+|.. +.+++++||++
T Consensus 20 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~ 92 (378)
T PRK07682 20 EGVISLGVGEPDFVTPWNVREASIRSLEQGY-------TSYTANAGLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQ 92 (378)
T ss_pred CCeEEeCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHH
Confidence 356888888765543 36777766653211 124445567789998888888876653 24666658899
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
|+..++.++++|||+|++..+.++. ........|..+..++.+.++++.+|++++++++.+ +++++++++++|| +
T Consensus 93 al~~~~~~l~~~gd~vl~~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG 168 (378)
T PRK07682 93 ALDVAMRAIINPGDEVLIVEPSFVS---YAPLVTLAGGVPVPVATTLENEFKVQPAQIEAAITA-KTKAILLCSPNNPTG 168 (378)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCchh---hHHHHHHcCCEEEEeecCCccCCCCCHHHHHhhcCc-ccEEEEEECCCCCcC
Confidence 9999999999999999987765543 344455566644344333234678999999998865 4566655566666 2
Q ss_pred ----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 180 ----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 180 ----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
..++++|+++|++||++||+||+|....+.. .+.+. + ....++++||||+| |.+| ||+++++++++
T Consensus 169 ~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~~~~i~ 246 (378)
T PRK07682 169 AVLNKSELEEIAVIVEKHDLIVLSDEIYAELTYDE-AYTSFASIKGMRERTILISGFSKGF-AMTGWRLGFIAAPVYFSE 246 (378)
T ss_pred cCcCHHHHHHHHHHHHHcCcEEEEehhhhhcccCC-CCCChhhcccccCCEEEEecCcccc-cChhhhhhhhhcCHHHHH
Confidence 2259999999999999999999998665432 11111 1 12358899999999 6667 99999999988
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-CCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-KIT 326 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-~~~ 326 (1342)
.+..... +...+++...+.++..++ +....+.++.++.+.++++++.+.|.+.|+.+.. +.+++++|+.++.. ..+
T Consensus 247 ~l~~~~~-~~~~~~~~~~q~a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-p~g~~~~~~~~~~~~~~~ 323 (378)
T PRK07682 247 AMLKIHQ-YSMMCAPTMAQFAALEAL-RAGNDDVIRMRDSYRKRRNFFVTSFNEIGLTCHV-PGGAFYAFPSISSTGLSS 323 (378)
T ss_pred HHHHHHH-hhccCCCHHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHHHCCCccCC-CCeeEEEEEeccCCCCCH
Confidence 8875432 222233344555544444 3323357778888999999999999998887543 55678888887542 345
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+++..+++++||.+.++..++... .+++|++++.
T Consensus 324 ~~~~~~ll~~~gv~v~pg~~f~~~~----~~~iRis~~~ 358 (378)
T PRK07682 324 EEFAEQLLLEEKVAVVPGSVFGESG----EGFIRCSYAT 358 (378)
T ss_pred HHHHHHHHHhCCEEEcCchhhCcCC----CCeEEEEeCC
Confidence 6777788877899999876554321 4679999885
No 132
>PRK09082 methionine aminotransferase; Validated
Probab=99.87 E-value=1.5e-20 Score=226.34 Aligned_cols=338 Identities=11% Similarity=0.116 Sum_probs=230.8
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
.|......+...+....+ ....+.+..+++..+ +.+.+++.+.+.... ..|....+..++++++++++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~~-~~~~i~l~~g~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~G~~~lr~~~a~~l~~ 82 (386)
T PRK09082 11 KLPNVGTTIFTVMSALAA-EHGAINLSQGFPDFDGPPYLVEALAYAMAAGH-------NQYPPMTGVAALREAIAAKTAR 82 (386)
T ss_pred HhhccCccHHHHHHHHHh-hCCEEEecCCCCCCCCCHHHHHHHHHHHHcCC-------CCCCCCCCcHHHHHHHHHHHHH
Confidence 444444444444443332 235577877765443 557888776653211 1244455667899989999998
Q ss_pred HhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHH
Q psy13354 85 IFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVE 159 (1342)
Q Consensus 85 ~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le 159 (1342)
++|.+ ..+++++||++|+..++.+++.|||+|++..+.++. ....+...|. +++.++.+ +++.+|+++++
T Consensus 83 ~~~~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vli~~p~y~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~ 157 (386)
T PRK09082 83 LYGRQYDADSEITVTAGATEALFAAILALVRPGDEVIVFDPSYDS---YAPAIELAGG--RAVRVALQPPDFRVDWQRFA 157 (386)
T ss_pred HhCCCCCCCCcEEEeCCHHHHHHHHHHHHcCCCCEEEEeCCCchh---hHHHHHHcCC--EEEEEecCcccccCCHHHHH
Confidence 88864 246666588999999999999999999987755544 3444455666 55555654 46789999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCc
Q psy13354 160 YLAKKNKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK 229 (1342)
+.+++ +++++++++++|| + ..++++|+++|++||++||+|++|....+......+... ...++++||||
T Consensus 158 ~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~i~~~a~~~~i~li~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK 236 (386)
T PRK09082 158 AAISP-RTRLIILNTPHNPSGTVWSAADMRALWQLIAGTDIYVLSDEVYEHIVFDGAGHASVLRHPELRERAFVVSSFGK 236 (386)
T ss_pred HhcCc-cceEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCEEEEEehhhhhhccCCCCCCChhhCcCccCcEEEEeechh
Confidence 98875 4566666565566 2 247999999999999999999999765553322222211 13588899999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.+ |..| ||+++++++++.+........++ .+.+.+.+++..+ .....+.+++++.+.++++++.+.|++.|+++
T Consensus 237 ~~-~~~G~RiG~iv~~~~l~~~~~~~~~~~~~~-~~~~~q~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~ 313 (386)
T PRK09082 237 TY-HVTGWKVGYCVAPAALSAEFRKVHQYNTFT-VNTPAQLALADYL-RAEPEHYLELPAFYQAKRDRFRAALANSRFKL 313 (386)
T ss_pred hc-cchhhhhhhhhCCHHHHHHHHHHHhhhcCC-CChHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 99 6667 99999999988877643322223 3344555444333 32334677788889999999999999888876
Q ss_pred eeCCCCCeEEEEEccC--CCCCHHHHHHHHHHCCceeeeccCCCC-CCCccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRN--KKITGKIAESILESANIICNKNSIPND-PEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~-~~~~~~~~~lRi~~~~ 365 (1342)
.. +.+++++|+++++ ...+.+++..+++++||.+.|+..++. +. ..+++|++++.
T Consensus 314 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~v~pg~~f~~~~~---~~~~~Ri~~~~ 371 (386)
T PRK09082 314 LP-CEGTYFQLVDYSAISDLDDVEFCQWLTREHGVAAIPLSVFYADPF---PHRLVRLCFAK 371 (386)
T ss_pred cC-CCeeEEEEEeccccCCCCHHHHHHHHHHhCCEEEeCcHHhCCCCC---CCCEEEEEecC
Confidence 43 4667889999874 234557777788888999998765432 22 24679999875
No 133
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=99.87 E-value=3.2e-20 Score=225.43 Aligned_cols=326 Identities=18% Similarity=0.198 Sum_probs=221.1
Q ss_pred CceeeeecC---CCCcHH----HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHH
Q psy13354 28 NNIELIASE---NYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~---n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~ 100 (1342)
+.+.|..++ |+.+|+ +.+++.+++.. +...|++..+..+|++ .+++++|.+++++++ +|+.
T Consensus 37 ~~~~L~~g~p~~D~~tds~t~a~~~a~~~a~~~-------g~~~Y~~~~g~~~Lre----aia~~~~~~~vv~t~-ggt~ 104 (460)
T PRK13238 37 NPFLLKSEDVFIDLLTDSGTGAMSDRQWAAMMR-------GDEAYAGSRSYYRLED----AVKDIFGYPYTIPTH-QGRA 104 (460)
T ss_pred CEEeCCCCCCCCCCCCCCCchhhhHHHHHHHHh-------CCcccCCCCCHHHHHH----HHHHHhCCCcEEECC-CHHH
Confidence 567787777 466655 56666666531 1234777777888888 788888888776665 9999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC------CC--CCCCHHHHHHHHHhc---CCeE
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN------KK--EKIDYKKVEYLAKKN---KPKL 169 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~------~~--~~id~e~Le~~i~~~---~~~l 169 (1342)
|+..+++++++||| |++++. .+.++...+...|.....++.+.. +. |.+|++.|++.++++ ++++
T Consensus 105 A~~~~~~all~pGD-Vii~~p---~~~~~~~~i~~~G~~~v~v~~~~~~~~~~~~~f~g~id~e~Le~~i~~~~~~~tk~ 180 (460)
T PRK13238 105 AEQILFPVLIKKGD-VVPSNY---HFDTTRAHIELNGATAVDLVIDEALDTGSRHPFKGNFDLEKLEALIEEVGAENVPF 180 (460)
T ss_pred HHHHHHHHhCCCCC-EEccCC---cccchHHHHHHcCCEEEEEeccccccccccccccCCcCHHHHHHHHhhcCCCceeE
Confidence 99999999999999 775543 333344445667775544443211 13 349999999999863 4567
Q ss_pred EEEcCCCCC-c-----ccCHHHHHHHHHHcCCEEEEEcccchh-hhhc-----C-CCCC-------CCCCCcEEEecCCc
Q psy13354 170 IIAGASAYS-Q-----YIDFERFYHIAKNINSYFMVDMAHYAG-LIAA-----G-EYPN-------PVPFADFITSTTHK 229 (1342)
Q Consensus 170 iv~~~s~~~-~-----~~~l~~I~~la~~~gi~LIvDea~~~g-~~~~-----~-~~~~-------~l~~~Divv~S~sK 229 (1342)
|+++.++|+ + ..++++|+++|++||++||+|++|..+ .++. + ...+ ....+|++++|.+|
T Consensus 181 Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K 260 (460)
T PRK13238 181 IVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFAENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKK 260 (460)
T ss_pred EEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchhhhhhhhhhccccccCCCHHHHhhhhcccCcEEEEeccc
Confidence 777666665 2 225789999999999999999988542 2111 1 1111 11347999999999
Q ss_pred cCCCCCeeEEEEe-chhHHHHhhcc---CCc-cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 230 SLRGPRGGFILMK-KKYKKIINSAV---FPG-IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 230 ~l~gp~GG~iv~~-~~l~~~l~~~~---~~~-~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
.+.++.||+++++ +++.+.++... ..+ .+++.....+.|++.++.+...+ .+.+...+++++|.+.|.+.|+
T Consensus 261 ~g~~~~GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~~~~Ala~~l~e~~~~---~~~~~~~~~~~~l~~~L~~~G~ 337 (460)
T PRK13238 261 DAMVNIGGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGRDMEALAVGLYEGMDE---DYLAYRIGQVEYLGEGLEEAGV 337 (460)
T ss_pred CCCCcceeEEEcChHHHHHHhhhcccccCCcccccCcHHHHHHHHHhhHHHhhCh---HHHHHHHHHHHHHHHHHHHCCC
Confidence 9878889999998 47888877643 123 34444444467777777665442 3344455678999999999999
Q ss_pred EEeeCCCCCeEEEEEccCCC--------CCHHHHHHHHHHCCceeeeccCCCCCCCc-c------ccccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRNKK--------ITGKIAESILESANIICNKNSIPNDPEKP-Y------FTSGIRLGSSAITTR 369 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~--------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~-~------~~~~lRi~~~~~~t~ 369 (1342)
++.. |.++|++++++.... .+.+++.+|+++.||.+.+...+..+..+ - ....+|++++ .+
T Consensus 338 ~~~~-p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~---rr 413 (460)
T PRK13238 338 PIQT-PAGGHAVFVDAGKFLPHIPAEQFPAQALACELYLEAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIP---RR 413 (460)
T ss_pred CeEc-cCCceEEEEEchhcCCCCCCCCCchHHHHHHHHHHcCeeeecccceecccCCCCccccCCccceEEEecc---cc
Confidence 9865 677899999986531 25789999999999999886533322211 0 1356898877 33
Q ss_pred ccchhhH
Q psy13354 370 GFSELEI 376 (1342)
Q Consensus 370 ~~~e~d~ 376 (1342)
..+++.+
T Consensus 414 ~~~~~~~ 420 (460)
T PRK13238 414 VYTQSHM 420 (460)
T ss_pred cCCHHHH
Confidence 3444444
No 134
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.5e-20 Score=221.27 Aligned_cols=201 Identities=36% Similarity=0.534 Sum_probs=176.7
Q ss_pred cccccchhhHHHHHHHHH-cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCcc
Q psy13354 391 NTLIGQNHISKSLINALD-KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMD 469 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~-~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d 469 (1342)
++++|++.++..+...+. .++.+|++||+||||+|||++|..+|+.+.|.... ...+|..|+.|..+..+.|+|
T Consensus 1 ~~~~~~~~~~~~l~~~~~~~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~-----~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 1 DELVPWQEAVKRLLVQALESGRLPHALLFYGPPGVGKTTAALALAKELLCENPT-----GLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CCcccchhHHHHHHHHHHhcCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcc-----cCCcccchhhhhHHhhcCCCc
Confidence 367888888888877776 78899999999999999999999999999997543 346788899999999999999
Q ss_pred EEEEccCCCcC----HHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHH
Q psy13354 470 YIEMDAASTRG----INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPIT 545 (1342)
Q Consensus 470 ~~~i~~~~~~~----~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~ 545 (1342)
+.+++++...+ ++.++++.+.....+..+++|||||||+|.|+.++.|+|++++|+|+.++.||++||++.++.++
T Consensus 76 ~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n~~~~il~t 155 (325)
T COG0470 76 FLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITNDPSKILPT 155 (325)
T ss_pred eEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcCChhhccch
Confidence 99999986655 56788888888888888899999999999999999999999999999999999999999999999
Q ss_pred HhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 546 VLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 546 L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
|+|||+.+.|.+++......+.. ++++..++..++||+|.+.+.++.+...
T Consensus 156 I~SRc~~i~f~~~~~~~~i~~~e-----------~~~l~~i~~~~~gd~r~~i~~lq~~~~~ 206 (325)
T COG0470 156 IRSRCQRIRFKPPSRLEAIAWLE-----------DQGLEEIAAVAEGDARKAINPLQALAAL 206 (325)
T ss_pred hhhcceeeecCCchHHHHHHHhh-----------ccchhHHHHHHHHHHHcCCCHHHHHHHh
Confidence 99999999999966655555543 6788999999999999999998765544
No 135
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=99.87 E-value=3.5e-20 Score=224.51 Aligned_cols=325 Identities=18% Similarity=0.200 Sum_probs=222.7
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHHHHHHHHc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~~~al~al-- 109 (1342)
++..+.|+.+.+++.+.+.+.+ +.+.+..+.......+..+.+++.+++++|. + +.+++++|+|+++..++.++
T Consensus 26 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~ 103 (401)
T PRK10874 26 AATALKPQAVIEATQQFYSLSA--GNVHRSQFAAAQRLTARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYAR 103 (401)
T ss_pred CcccCCCHHHHHHHHHHHHhcc--CCCCCcccHHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhh
Confidence 4456777889999888775433 3332222222333455566688899999998 4 56777778999999999887
Q ss_pred --cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
+++||+|++++.++++.+..+ ......|+.+..+ +.+.++.+|++++++.+++ ++++++++.++++ ...|++
T Consensus 104 ~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v--~~~~~~~~d~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~ 180 (401)
T PRK10874 104 PRLQPGDEIIVSEAEHHANLVPWLMVAQQTGAKVVKL--PLGADRLPDVDLLPELITP-RTRILALGQMSNVTGGCPDLA 180 (401)
T ss_pred ccCCCcCEEEECCcchHHHHHHHHHHHHHhCCEEEEE--ecCCCCcCCHHHHHHhcCc-CcEEEEEeCCcccccCcCCHH
Confidence 479999998887776543333 3345667755444 5566788899999999976 4566666555544 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---------- 253 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---------- 253 (1342)
+|+++|+++|+++++|++|+.|.+.... ... .+|++++|+||++ ||.| |++++++++.+.+....
T Consensus 181 ~i~~l~~~~g~~~ivD~a~~~g~~~~~~--~~~-~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 256 (401)
T PRK10874 181 RAITLAHQAGMVVMVDGAQGAVHFPADV--QAL-DIDFYAFSGHKLY-GPTGIGVLYGKSELLEAMSPWQGGGKMLTEVS 256 (401)
T ss_pred HHHHHHHHcCCEEEEECCcccccccCCc--hhc-CCCEEEEeccccc-CCCccEEEEEchHHHhcCCCeecCCcceEeec
Confidence 9999999999999999999876552111 111 3799999999977 8888 99999998877654221
Q ss_pred ----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC
Q psy13354 254 ----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 254 ----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~ 322 (1342)
..+..|+++.+...++..++....+.+.....++..+.++++.+.|.+. |+.+... +.++++++.+++
T Consensus 257 ~~~~~~~~~~~~~e~Gt~~~~~~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~-~~~~i~~~~~~~ 335 (401)
T PRK10874 257 FDGFTPQSAPWRFEAGTPNVAGVIGLSAALEWLADIDINQAESWSRSLATLAEDALAKLPGFRSFRC-QDSSLLAFDFAG 335 (401)
T ss_pred cCccCCCCChhhccCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCC-CCCcEEEEEECC
Confidence 1122356666677777777665544466677888888999999999886 7776543 345677777654
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccc-cccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPE-KPY-FTSGIRLGSSAITTRG 370 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~-~~~~lRi~~~~~~t~~ 370 (1342)
.. ..++. ..|.++||.+.++..+..+- ..+ ..+++|+|++.++|.+
T Consensus 336 ~~-~~~~~-~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~e 383 (401)
T PRK10874 336 VH-HSDLV-TLLAEYGIALRAGQHCAQPLLAALGVTGTLRASFAPYNTQS 383 (401)
T ss_pred cC-HHHHH-HHHHHCCcEEeccccchHHHHHHhCCCCEEEEEecccCCHH
Confidence 22 33444 55666799998765332110 000 0357999999987643
No 136
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=99.87 E-value=3.8e-20 Score=223.12 Aligned_cols=339 Identities=14% Similarity=0.110 Sum_probs=225.6
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
++..........+..........|.+..+++.++ +.+.+++.+.+...+ ..|....+..++++++++++..
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~~~~ 82 (391)
T PRK07309 10 QLDKIEVSLIRQFDQSISDIPGILKLTLGEPDFTTPDHVKEAAKRAIDANQ-------SHYTGMAGLLELRQAAADFVKE 82 (391)
T ss_pred hhhhcCccHHHHHHHHHHhcCCeEEcCCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHHH
Confidence 3444444344444332222245677877765443 337777776664211 1244455567899988888877
Q ss_pred HhCC----CCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHH
Q psy13354 85 IFNA----EAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVE 159 (1342)
Q Consensus 85 ~~g~----~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le 159 (1342)
.+|. ++.+++++|+++|+..++.+++.+||+|++.++.++++ .......|.. ++.++.++ ++.+|++.++
T Consensus 83 ~~~~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vl~~~p~y~~~---~~~~~~~g~~--~~~~~~~~~~~~~d~~~l~ 157 (391)
T PRK07309 83 KYNLDYAPENEILVTIGATEALSASLTAILEPGDKVLLPAPAYPGY---EPIVNLVGAE--IVEIDTTENDFVLTPEMLE 157 (391)
T ss_pred HhCCCCCCCCcEEEeCChHHHHHHHHHHhcCCCCEEEEeCCCCcch---HHHHHHcCCE--EEEEecCCcCCcCCHHHHH
Confidence 6664 24466665889999999999999999999877555544 4445566764 45555543 4678999999
Q ss_pred HHHHhc--CCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCc
Q psy13354 160 YLAKKN--KPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~--~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK 229 (1342)
+++++. +++++++++++|| + ..++++|+++|++||+++|+|++|....+......+... ...++++|+||
T Consensus 158 ~~~~~~~~~~~~i~l~~P~NPtG~~~s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 237 (391)
T PRK07309 158 KAILEQGDKLKAVILNYPANPTGVTYSREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILINGLSK 237 (391)
T ss_pred HHhhccCCCeEEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEecChh
Confidence 988752 3567776655655 2 236999999999999999999999865542222222111 12488999999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.+ |.+| ||+++++++++.+... ..+...+++.+.+.++..++.+ ...+....++++.++++++.+.|++.|+.+
T Consensus 238 ~~-g~~GlRvG~~v~~~~~~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (391)
T PRK07309 238 SH-AMTGWRIGLIFAPAEFTAQLIKS-HQYLVTAATTMAQFAAVEALTN-GKDDALPMKKEYIKRRDYIIEKMTDLGFKI 314 (391)
T ss_pred hc-cCccceeEEEEeCHHHHHHHHHH-HhhcccCCChHHHHHHHHHHhC-ChhHHHHHHHHHHHHHHHHHHHHHHCCCee
Confidence 99 6667 9999999998888764 2333334445555555444432 222344567788889999999999888876
Q ss_pred eeCCCCCeEEEEEccCCC--CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRNKK--ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~~--~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.. +.+++++|+.++... .+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 315 ~~-p~gg~~~~~~l~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 370 (391)
T PRK07309 315 IK-PDGAFYIFAKIPAGYNQDSFKFLQDFARKKAVAFIPGAAFGPYG----EGYVRLSYAA 370 (391)
T ss_pred cC-CCeeEEEEEECCCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEecC
Confidence 43 456788898887532 345677788888899999876654322 4679999875
No 137
>PRK08912 hypothetical protein; Provisional
Probab=99.87 E-value=2.5e-20 Score=224.66 Aligned_cols=338 Identities=12% Similarity=0.098 Sum_probs=224.6
Q ss_pred ccccchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
+....+.....+...... ...+.+..+.... ++.+.+++.+.+.+. ...|....+..++++++++++.+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~p~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~~~~~ 79 (387)
T PRK08912 8 FADLPTTIFEVMSQLARE-HGAINLGQGFPDDPGPEDVRRAAADALLDG-------SNQYPPMMGLPELRQAVAAHYARF 79 (387)
T ss_pred HhhCCCCHHHHHHHHHhh-CCeEEccCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCcHHHHHHHHHHHHHH
Confidence 333344344444333322 3457776665333 344666666554321 122455556678999888888877
Q ss_pred hCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHH
Q psy13354 86 FNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEY 160 (1342)
Q Consensus 86 ~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~ 160 (1342)
+|.+ + .+++++|+++|+..++.+++++||+|++..+.++. ....+...|..+ +.++.+ +++.+|++.+++
T Consensus 80 ~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~Vlv~~p~y~~---~~~~~~~~g~~~--~~~~~~~~~~~~~~~~l~~ 154 (387)
T PRK08912 80 QGLDLDPETEVMVTSGATEALAAALLALVEPGDEVVLFQPLYDA---YLPLIRRAGGVP--RLVRLEPPHWRLPRAALAA 154 (387)
T ss_pred hCCCCCCcccEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchh---hHHHHHHcCCEE--EEEecCcccCcCCHHHHHH
Confidence 7753 3 56666688999999999999999999987755543 344456667744 444554 467899999999
Q ss_pred HHHhcCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCcc
Q psy13354 161 LAKKNKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHKS 230 (1342)
Q Consensus 161 ~i~~~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK~ 230 (1342)
.+.+ +++++++++++|| + ..++++|+++|++||++||+|++|....+....+.+.. ...+++++|+||.
T Consensus 155 ~~~~-~~~~v~l~~p~NPtG~~~s~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~ 233 (387)
T PRK08912 155 AFSP-RTKAVLLNNPLNPAGKVFPREELALLAEFCQRHDAVAICDEVWEHVVFDGRRHIPLMTLPGMRERTVKIGSAGKI 233 (387)
T ss_pred HhCc-cceEEEEeCCCCCcCcccCHHHHHHHHHHHHHCCeEEEEhhhhhhcccCCCCCcChhhCCCccCceEEEeechhh
Confidence 8875 4556666566666 2 22588899999999999999999976544321221111 1236889999999
Q ss_pred CCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 231 LRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 231 l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
+ |+.| ||+++++++++.+........++.+ ...+.++..++.. ..+++++.++++.++++++.+.|...|+.+.
T Consensus 234 ~-g~~GlRiG~~~~~~~~~~~l~~~~~~~~~~~~-~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 310 (387)
T PRK08912 234 F-SLTGWKVGFVCAAPPLLRVLAKAHQFLTFTTP-PNLQAAVAYGLGK-PDDYFEGMRADLARSRDRLAAGLRRIGFPVL 310 (387)
T ss_pred c-cCcCceeEEEecCHHHHHHHHHHHhhccccCC-hHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 9 7677 9999999988887664333333332 2234444444432 2336677889999999999999999888764
Q ss_pred eCCCCCeEEEEEccCC---CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNK---KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~---~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. +.+++++|+.++.. ..+.+++..+++++||.+.++..+..... +.+++|++++.
T Consensus 311 ~-~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~--~~~~iRl~~~~ 368 (387)
T PRK08912 311 P-SQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDP--VTSVVRFCFAK 368 (387)
T ss_pred C-CCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCC--CCCEEEEEEeC
Confidence 3 45678899998752 23556788888878999998765532211 14689999986
No 138
>PRK06290 aspartate aminotransferase; Provisional
Probab=99.87 E-value=9.2e-20 Score=220.17 Aligned_cols=316 Identities=14% Similarity=0.077 Sum_probs=215.0
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----C-ceEecCCHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----A-ANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~-~vi~~~sGs~ 100 (1342)
..+.|..+++..+ +.+.+++...+.... ...|.. .+..++++++++++.+.+|.+ . .+++++|+++
T Consensus 45 ~~i~L~~g~p~~~~~~~~~~~l~~~~~~~~------~~~Y~~-~G~~~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~ 117 (410)
T PRK06290 45 ELIDMGVGEPDEMADESVVEVLCEEAKKPE------NRGYAD-NGIQEFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKP 117 (410)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCC-CCcHHHHHHHHHHHHHHcCCCcCCCcceEEEccCHHH
Confidence 3577887776543 337777665542111 112332 456789998888887776643 2 4666657778
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++..++.+++++||+|+++.+.++.+ ...+...|. ++++++.+ .++.+|++.+++.+.+ +++++++++|+||
T Consensus 118 al~~~~~~~~~~gd~Vlv~~P~y~~~---~~~~~~~g~--~v~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~nP~NP 191 (410)
T PRK06290 118 ALAMLPSCFINPGDVTLMTVPGYPVT---GTHTKYYGG--EVYNLPLLEENNFLPDLDSIPKDIKE-KAKLLYLNYPNNP 191 (410)
T ss_pred HHHHHHHHhCCCCCEEEEeCCCCccH---HHHHHHcCC--EEEEEecCCCcCCcCCHHHHHHhhcc-cceEEEEECCCCC
Confidence 99999999999999999877665544 334456676 45555554 3577899999988865 5677777766777
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+...+++|+++|++||++||+||+|....+.. ...+... ..+++++||||.+ |.+| ||+++++++
T Consensus 192 TG~v~s~e~l~~l~~la~~~~~~iI~DEaY~~~~~~~-~~~s~~~~~~~~~~~I~i~SfSK~~-g~~GlRiG~ii~~~~l 269 (410)
T PRK06290 192 TGAVATKEFYEEVVDFAKENNIIVVQDAAYAALTFDG-KPLSFLSVPGAKEVGVEIHSLSKAY-NMTGWRLAFVVGNELI 269 (410)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEecchhhceeCC-CCcChhcCCCccccEEEEeechhhc-CCchhheEeEEeCHHH
Confidence 22257899999999999999999998654422 2112111 2358899999999 6677 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
++.+......+..+. ..+.+.++..++. .. .+.++.++++.++++++.+.|.+.|+.+.. +.+++++|+.+++..
T Consensus 270 ~~~l~~~~~~~~~~~-~~~~q~aa~~~l~-~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-p~g~f~l~v~lp~~~~ 345 (410)
T PRK06290 270 VKAFATVKDNNDSGQ-FIAIQKAGIYALD-HP-EITEKIREKYSRRLDKLVKILNEVGFKAEM-PGGTFYLYVKAPKGTK 345 (410)
T ss_pred HHHHHHHHhccccCC-cHHHHHHHHHHhh-Cc-HHHHHHHHHHHHHHHHHHHHHHhCCCeecC-CCeeeEEEEECCCccc
Confidence 888876544433332 2344444444433 22 367778889999999999999998887643 456788899987532
Q ss_pred ------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 325 ------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 325 ------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+.+++..++++.+|.+.|+..+ .+++|++++..+...
T Consensus 346 ~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~--------~~~lRi~~~~~~~~~ 389 (410)
T PRK06290 346 SGIKFENAEEFSQYLIKEKLISTVPWDDA--------GHFLRFSVTFEAKDE 389 (410)
T ss_pred cCCCCCCHHHHHHHHHHhCCEEEECCccc--------cCeEEEEEEcccccc
Confidence 34577888888766665543211 257999998754433
No 139
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=99.87 E-value=3.8e-20 Score=219.95 Aligned_cols=314 Identities=24% Similarity=0.252 Sum_probs=206.9
Q ss_pred eeeecCCCCcH----HHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHH
Q psy13354 31 ELIASENYTSL----AVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAV 105 (1342)
Q Consensus 31 ~l~a~~n~l~~----~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~a 105 (1342)
.++++++|++. ++++++.+.+. .+..+..+.+++ +..+ ..+.+++.+++++|.++.++++ +|++++.++
T Consensus 4 ~~~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~~~~~----~~~~l~~~la~~~~~~~~iv~~-sg~~a~~~~ 77 (349)
T cd06454 4 LNFCSNDYLGLANHPEVIEAAKEALD-KYGVGAGGSRLISGTSD----LHEELEEELAEFHGKEAALVFS-SGYAANDGV 77 (349)
T ss_pred eecccCCccccCCCHHHHHHHHHHHH-HhCCCCCCcCeecCCch----HHHHHHHHHHHHhCCCCEEEec-cHHHHHHHH
Confidence 35777888754 49999999885 454333322222 2244 3444555899999988776666 899999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh----cCCeEEEEcCCCCC--c
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK----NKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~----~~~~liv~~~s~~~--~ 179 (1342)
+.+++++||+|++....|+ +........|..+ ++++. +|++++++.+++ .+++++++++++++ .
T Consensus 78 ~~~~~~~gd~Vl~~~~~~~---~~~~~~~~~g~~~--~~~~~-----~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~ 147 (349)
T cd06454 78 LSTLAGKGDLIISDSLNHA---SIIDGIRLSGAKK--RIFKH-----NDMEDLEKLLREARRPYGKKLIVTEGVYSMDGD 147 (349)
T ss_pred HHHhcCCCCEEEEehhhhH---HHHHHHHHcCCce--EEecC-----CCHHHHHHHHHHhhccCCCeEEEEeccccCCCC
Confidence 9999999999997665443 3444455666644 33332 478889988875 35677777554444 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CC---CC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EY---PN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~---~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|+++|+++|+++|+|++|+.|.+... .. .. .....|++++|+||++ ++.||++++++++++.+.....
T Consensus 148 ~~~~~~i~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~gG~i~~~~~~~~~~~~~~~ 226 (349)
T cd06454 148 IAPLPELVDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAF-GAVGGYIAGSKELIDYLRSYAR 226 (349)
T ss_pred ccCHHHHHHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhh-cccCCEEECCHHHHHHHHHhch
Confidence 55899999999999999999999987655321 11 11 1123689999999999 6688999999888887766444
Q ss_pred CccccCCc-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPL-MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~-~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
++..+++. .+..+++..++. .... .+...+++.++++++.+.|.+.|+++... ....+.++..+....+.++...+
T Consensus 227 ~~~~~~~~~~~~~~a~~~~l~-~~~~-~~~~~~~~~~~~~~l~~~l~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L 303 (349)
T cd06454 227 GFIFSTSLPPAVAAAALAALE-VLQG-GPERRERLQENVRYLRRGLKELGFPVGGS-PSHIIPPLIGDDPAKAVAFSDAL 303 (349)
T ss_pred hhhccCCCCHHHHHHHHHHHH-HHhc-CHHHHHHHHHHHHHHHHHHHhcCCcccCC-CCCcEEEEeCCChHHHHHHHHHH
Confidence 44433333 333444444443 3332 45678899999999999999988876542 23334444443222345666666
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+++ ||.+.+..++.... ..+.+|++++..++
T Consensus 304 ~~~-gI~~~~~~~~~~~~---~~~~iRi~~~~~~~ 334 (349)
T cd06454 304 LER-GIYVQAIRYPTVPR---GTARLRISLSAAHT 334 (349)
T ss_pred HhC-CceEEEecCCccCC---CCCeEEEEEeCCCC
Confidence 665 99998754332211 13579999877555
No 140
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=99.87 E-value=4.7e-20 Score=220.02 Aligned_cols=317 Identities=21% Similarity=0.246 Sum_probs=209.3
Q ss_pred CceeeeecCCCC----cHHHHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYT----SLAVMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.|.+..+ +++ +|.+++++.+.+. .+..++.+... ++.. .+...+++.++++++.+..++++ +|++++
T Consensus 17 ~~id~~~~-~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~----~~~~~l~~~la~~~~~~~~i~~~-~G~~~~ 89 (360)
T TIGR00858 17 RLLNFSSN-DYLGLASHPEVIQAAQQGAE-QYGAGSTASRLVSGNS----PLHEELEEELAEWKGTEAALLFS-SGYLAN 89 (360)
T ss_pred eEEecccC-CcccCCCCHHHHHHHHHHHH-hcCCCCCCcCcccCCc----HHHHHHHHHHHHHhCCCCEEEEC-chHHHH
Confidence 45767666 442 3569999888874 44433333222 1222 33444556888888877776766 888888
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~- 178 (1342)
..++.+++++||+|++..+.++ .........|..+.. ++. +|++.+++.++.. +++++++++.+++
T Consensus 90 ~~~l~~~~~~gd~v~~~~~~~~---~~~~~~~~~g~~~~~--~~~-----~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~ 159 (360)
T TIGR00858 90 VGVISALVGKGDLILSDALNHA---SLIDGCRLSGARVRR--YRH-----NDVEHLERLLEKNRGERRKLIVTDGVFSMD 159 (360)
T ss_pred HHHHHHhCCCCCEEEEEccccH---HHHHHHHhcCCceEE--ecC-----CCHHHHHHHHHHcccCCCeEEEEeCCccCC
Confidence 8888888999999997765444 444445556664333 332 4889999988763 3566666554443
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC--CC--CC--CCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY--PN--PV--PFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~--~~--~l--~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...++++|.++|+++|++||+||+|+.|.+..... .. .+ ...+++++|+||+| |+.|||+++++++++.+..
T Consensus 160 G~~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~i~s~sK~~-~~~gG~~~~~~~~~~~~~~ 238 (360)
T TIGR00858 160 GDIAPLPQLVALAERYGAWLMVDDAHGTGVLGEDGRGTLEHFGLKPEPVDIQVGTLSKAL-GSYGAYVAGSQALIDYLIN 238 (360)
T ss_pred CCCcCHHHHHHHHHHcCcEEEEECcccccCcCCCCCchHHhcCCCccCCcEEEEechhhh-hccCcEEEcCHHHHHHHHH
Confidence 35699999999999999999999998765532100 00 01 13578999999999 7788999999988888765
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
....+..+++.++...++..+..+... ..+...+++.++++++.+.|.+.++.+. ++.++++|+.++....+.++..
T Consensus 239 ~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~ 315 (360)
T TIGR00858 239 RARTLIFSTALPPAVAAAALAALELIQ-EEPWRREKLLALIARLRAGLEALGFTLM--PSCTPIVPVIIGDNASALALAE 315 (360)
T ss_pred hCccceecCCCCHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHHcCCccC--CCCCCEEEEEeCCHHHHHHHHH
Confidence 444443333223333333333333333 3355688999999999999999887754 3457788888764333446666
Q ss_pred HHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++ ++||.+.+...+..+.+ .+++|++++..++.
T Consensus 316 ~l~-~~gI~v~~~~~~~~~~~---~~~iRis~~~~~~~ 349 (360)
T TIGR00858 316 ELQ-QQGIFVGAIRPPTVPAG---TSRLRLTLSAAHTP 349 (360)
T ss_pred HHH-HCCeeEeeeCCCCCCCC---CceEEEEEcCCCCH
Confidence 665 56999998655543322 35799999986663
No 141
>PRK08361 aspartate aminotransferase; Provisional
Probab=99.86 E-value=3.6e-20 Score=223.49 Aligned_cols=319 Identities=16% Similarity=0.139 Sum_probs=215.3
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
...+++..+++.++ +.+.+++.+.+... ...|....+..++++++++++.+.+|.. +.+++++|+++|
T Consensus 33 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~a 105 (391)
T PRK08361 33 ENVISLGIGEPDFDTPKNIKEAAKRALDEG-------WTHYTPNAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEA 105 (391)
T ss_pred cCeEEcCCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHH
Confidence 45688887776554 34777766665321 1124445566789998888877766642 345555588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++.+||+|+++++.++.+ ...+...|. +++.++++ .++.+|++++++.+.+. ++++++++++||
T Consensus 106 l~~~~~~l~~~g~~Vlv~~p~y~~~---~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~~-~~~v~i~~p~NPt 179 (391)
T PRK08361 106 TYLAFESLLEEGDEVIIPDPAFVCY---VEDAKIAEA--KPIRIPLREENEFQPDPDELLELITKR-TRMIVINYPNNPT 179 (391)
T ss_pred HHHHHHHhcCCCCEEEEcCCCCccc---HHHHHHcCC--EEEEEecCCccCCCCCHHHHHHhcccc-cEEEEEeCCCCCC
Confidence 9999999999999999877555443 444556676 44444554 35689999999988764 455555555665
Q ss_pred -cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 179 -QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 179 -~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
...+ +++|+++|++++++||+||+|....+......+... ..+++++|+||.+ |++| ||+++++++++.
T Consensus 180 G~~~~~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~-~~~GlRiG~~~~~~~~~~~ 258 (391)
T PRK08361 180 GATLDKEVAKAIADIAEDYNIYILSDEPYEHFLYEGAKHYPMIKYAPDNTILANSFSKTF-AMTGWRLGFVIAPEQVIKD 258 (391)
T ss_pred CcCcCHHHHHHHHHHHHHcCeEEEEEcccccceeCCCCCCCHhhcCCCCEEEEecCchhc-CCcHhhhhhhccCHHHHHH
Confidence 2235 899999999999999999999765443222222111 2468899999999 6667 999999988887
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC-CC
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK-KI 325 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~-~~ 325 (1342)
+..... +...+.+...+.++..++.+... .++++.++.+.++++.+.+.|++. |+.+. ++.+++++|+.++.. ..
T Consensus 259 ~~~~~~-~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~-~p~g~~~~~~~l~~~~~~ 336 (391)
T PRK08361 259 MIKLHA-YIIGNVASFVQIAGIEALRSKESWKAVEEMRKEYNERRKLVLKRLKEMPHIKVF-EPKGAFYVFANIDETGMS 336 (391)
T ss_pred HHHHHh-hhccCCChHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHHHHHHHhCCCCeec-CCCEEEEEEEECCCCCCC
Confidence 765322 22223334444444444432111 246777888899999999999886 66653 345678899998753 34
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 337 ~~~l~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 372 (391)
T PRK08361 337 SEDFAEWLLEKARVVVIPGTAFGKAG----EGYIRISYAT 372 (391)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCCCC----CCEEEEEecC
Confidence 56777777777899999876554322 3579999885
No 142
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.86 E-value=5.2e-20 Score=223.76 Aligned_cols=320 Identities=13% Similarity=0.068 Sum_probs=216.9
Q ss_pred CceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCH
Q psy13354 28 NNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sG 98 (1342)
+.|.+..++. + .++.+.+++.+++..... ..|....+..++++++++++...+|.+ +.+++++|+
T Consensus 53 ~~i~l~~G~P~~~~~~~~~~~~~~a~~~al~~~~~------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~v~it~G~ 126 (430)
T PLN00145 53 PVLPLGHGDPSAFPCFRTAPEAEDAVAAALRSGKY------NSYSTCVGLLPARRAIAEYLSRDLPYELSTDDIYLTAGC 126 (430)
T ss_pred CeeeCCCCCCCCCCCCCCCHHHHHHHHHHHHcCcC------CCCCCCccCHHHHHHHHHHHhhccCCCCChhhEEEeCCH
Confidence 5677777754 2 244588888877753211 124444556688887777776655543 445555589
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++|+..++.++++|||+|+++.+.++.+ .......|..+..+++..+.+|.+|++.+++++++++..+++.+++|++
T Consensus 127 ~~al~l~~~~l~~~Gd~Vlv~~P~y~~y---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~i~i~~P~NPt 203 (430)
T PLN00145 127 AQAIEIIMSVLAQPGANILLPRPGYPLY---EARAVFSGLEVRHFDLLPERGWEVDLEGVEALADENTVAMVIINPNNPC 203 (430)
T ss_pred HHHHHHHHHHhcCCCCEEEEcCCCCccH---HHHHHHcCCEEEEeeCCcccCCcCCHHHHHHHhCcCceEEEEeCCCCCC
Confidence 9999999999999999999877555443 3344566775555554434578899999999887765555655554433
Q ss_pred cc-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC--CcEEEecCCccCCCCCe---eEEEEe--chh
Q psy13354 179 QY-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF--ADFITSTTHKSLRGPRG---GFILMK--KKY 245 (1342)
Q Consensus 179 ~~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~--~Divv~S~sK~l~gp~G---G~iv~~--~~l 245 (1342)
+. . .+++|+++|+++|++||+||+|....+....+.+. +.. .-++++|+||.| +.+| ||++++ +.+
T Consensus 204 G~v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pG~RlG~iv~~~~~~~ 282 (430)
T PLN00145 204 GSVYSYEHLAKIAETARKLGILVIADEVYDHLTFGSKPFVPMGVFGEVAPVLTLGSISKRW-VVPGWRLGWIATCDPNGI 282 (430)
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEeccchhhccCCCCccchhhhcccCcEEEEecccccc-CCCCeeEEEEEEecchhh
Confidence 22 2 48999999999999999999997655432222221 111 347889999998 6677 999974 333
Q ss_pred H------HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEE
Q psy13354 246 K------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 246 ~------~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i 318 (1342)
+ +.+.... ....+++.+.+.++..++.....+++++.++.++++++.+.+.|.+. |+.....|.+++++|+
T Consensus 283 ~~~~~~~~~~~~~~--~~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~~~P~ga~y~~v 360 (430)
T PLN00145 283 LKETKVVDSIRNYL--NISTDPATFVQGAIPQIIANTKEEFFTKTLGLLKETADICYEKIKEIKCITCPHKPEGSMFVMV 360 (430)
T ss_pred hhhhHHHHHHHHHh--cccCCCCHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcCCCeeeEEEe
Confidence 2 2333322 22233445666666555543223477888899999999999999885 6654334678899999
Q ss_pred EccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 319 DLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 319 ~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++.. .++.+++..+++++||.+.|+..++. .+++|++++.
T Consensus 361 ~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~------~~~lRis~~~ 406 (430)
T PLN00145 361 KLDLSCLSGIKDDMDFCCKLAKEESVVVLPGSALGM------KNWLRITFAI 406 (430)
T ss_pred ccChhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC------CCeEEEEeCC
Confidence 88632 23557888999888999998876653 3579999984
No 143
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=99.86 E-value=7e-20 Score=221.74 Aligned_cols=318 Identities=22% Similarity=0.269 Sum_probs=206.8
Q ss_pred ceeeeecC--CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHH
Q psy13354 29 NIELIASE--NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~--n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~a 105 (1342)
.+++..+. ++ .++.+.+++.+.+.. +..+++..+...+ ..++.+++++++++++|.++.++++ +|++++..+
T Consensus 44 ~i~l~~~~~~~~~~~~~i~~a~~~~~~~-~~~~~~~~~~~~G---~~~l~~~l~~~la~~~g~~~~i~~t-sG~~a~~~~ 118 (397)
T PRK06939 44 VINFCANNYLGLANHPELIAAAKAALDS-HGFGMASVRFICG---TQDLHKELEEKLAKFLGTEDAILYS-SCFDANGGL 118 (397)
T ss_pred EEEeeccCccccCCCHHHHHHHHHHHHH-cCCCCcccccccC---CcHHHHHHHHHHHHHhCCCcEEEEc-ChHHHHHHH
Confidence 46555443 22 455688888887743 3223333222222 2366777778999999988777777 789999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---c--CCeEEEEcCCCC--C
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---N--KPKLIIAGASAY--S 178 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~--~~~liv~~~s~~--~ 178 (1342)
+.++++|||+|++.++.|+++ ...+...+. +++.++. .|++++++.+++ . +++++++....+ +
T Consensus 119 ~~~l~~~gd~vi~~~~~~~~~---~~~~~~~~~--~~~~~~~-----~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G 188 (397)
T PRK06939 119 FETLLGKEDAIISDALNHASI---IDGVRLCKA--KRYRYAN-----NDMADLEAQLKEAKEAGARHKLIATDGVFSMDG 188 (397)
T ss_pred HHHhCCCCCEEEEEhhhhHHH---HHHHHhcCC--ceEEeCC-----CCHHHHHHHHHhhhccCCCCeEEEEecCcCCCC
Confidence 999999999999877555443 333445555 3444443 388898888764 2 345555532222 2
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
...++++|.++|++||++||+|++|+.|.+.. +. ..+.....|++++|+||+++|+.|||+++++++++.+....
T Consensus 189 ~~~~~~~l~~la~~~~~~li~De~~~~g~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~g~r~G~v~~~~~~~~~l~~~~ 268 (397)
T PRK06939 189 DIAPLPEICDLADKYDALVMVDDSHAVGFVGENGRGTVEHFGVMDRVDIITGTLGKALGGASGGYTAGRKEVIDWLRQRS 268 (397)
T ss_pred CcCCHHHHHHHHHHhCCEEEEECcccccCcCCCCCCHHHHcCCCCCCcEEEEECHHHhCccCceEEEeCHHHHHHHHHhC
Confidence 44689999999999999999999997664422 11 11112236899999999997777899999999988887654
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
.++.++++..+..++++.+..+.+. ..++.++++.++++++.+.|.+.|+++.. +.+.++++.++....+.+++..+
T Consensus 269 ~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L 345 (397)
T PRK06939 269 RPYLFSNSLAPAIVAASIKVLELLE-ESDELRDRLWENARYFREGMTAAGFTLGP--GEHPIIPVMLGDAKLAQEFADRL 345 (397)
T ss_pred ccccccCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCEEEEEECCHHHHHHHHHHH
Confidence 4444444434443333333333333 23567788999999999999988876533 23344444444322345677777
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+++ ||.+.+..++..+.+ ..++|++++..++
T Consensus 346 ~~~-gI~v~~~~~~~~~~~---~~~iRi~~~~~~~ 376 (397)
T PRK06939 346 LEE-GVYVIGFSFPVVPKG---QARIRTQMSAAHT 376 (397)
T ss_pred HHC-CceEeeeCCCCCCCC---CceEEEEECCCCC
Confidence 766 999987554432222 3579999887655
No 144
>PRK06207 aspartate aminotransferase; Provisional
Probab=99.86 E-value=7.2e-20 Score=221.39 Aligned_cols=320 Identities=11% Similarity=0.035 Sum_probs=215.5
Q ss_pred CceeeeecC-CC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHH
Q psy13354 28 NNIELIASE-NY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~-n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~ 100 (1342)
+.+.+..++ ++ .++.+.+++.+.+.... ...|+...+..++++++++++++++|.+ +.+++++|+++
T Consensus 40 ~~i~l~~g~~~~~~p~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~ 113 (405)
T PRK06207 40 RPVDFSHGDVDAHEPTPGAFELFSAGVERGG------VQAYTEYRGDADIRELLAARLAAFTGAPVDAADELIITPGTQG 113 (405)
T ss_pred CceecCCcCCCCCCCCHHHHHHHHHHHhcCC------CccCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHH
Confidence 446666544 42 33457787777664211 1124444556689999999999988853 34566658888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC---CCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL---NKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~---~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
++..++.+++.|||+|++..+.|+. ....+...|..+..++++. ++++.+|++++++.+++. ++++++++|+|
T Consensus 114 al~~~~~~l~~~Gd~Vlv~~P~y~~---~~~~~~~~g~~v~~v~~~~~~~~~~~~~d~~~l~~~~~~~-~k~v~l~~P~N 189 (405)
T PRK06207 114 ALFLAVAATVARGDKVAIVQPDYFA---NRKLVEFFEGEMVPVQLDYLSADKRAGLDLDQLEEAFKAG-VRVFLFSNPNN 189 (405)
T ss_pred HHHHHHHHhcCCCCEEEEeCCCchh---HHHHHHHcCCEEEEEeccccCcccCCCcCHHHHHHhhhhc-CeEEEECCCCC
Confidence 9999999999999999987755544 3445566677444444321 235789999999988764 55566666666
Q ss_pred C-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C---CCcEEEecCCccCCCCCe---eEEEEech
Q psy13354 178 S-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P---FADFITSTTHKSLRGPRG---GFILMKKK 244 (1342)
Q Consensus 178 ~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~---~~Divv~S~sK~l~gp~G---G~iv~~~~ 244 (1342)
| + ..++++|+++|++||++||+||+|....+....+.... . ...++++||||.+ +.+| ||++++++
T Consensus 190 PTG~~~s~e~l~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~lpGlRiG~ii~~~~ 268 (405)
T PRK06207 190 PAGVVYSAEEIAQIAALARRYGATVIVDQLYSRLLYDGTSYTHLRALPIDPENVITIMGPSKTE-SLSGYRLGVAFGSPA 268 (405)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCchhcCCCCcCcEEEEecchhhc-cCcccceEEEEcCHH
Confidence 6 2 22588999999999999999999986544332222111 1 1237899999999 6556 99999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
+++.+......+..+ ...+.+.++..++.+ ...++++..+++.++++.+.+.|++. ++.+. .+.+++++|++++..
T Consensus 269 l~~~~~~~~~~~~~~-~~~~~q~a~~~~l~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~gg~fl~~~l~~~ 345 (405)
T PRK06207 269 IIDRMEKLQAIVSLR-AAGYSQAVLRTWFSE-PDGWMKDRIARHQAIRDDLLRVLRGVEGVFVR-APQAGSYLFPRLPRL 345 (405)
T ss_pred HHHHHHHHHhHhccC-CCHHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCeeEEEEEeCccc
Confidence 988887643333332 223444444444332 12246667778888888999999876 66653 356789999999753
Q ss_pred C-CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 324 K-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 324 ~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. .+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 346 ~~~~~~~~~~l~~~~gV~v~pG~~F~~~~----~~~~Ris~~~ 384 (405)
T PRK06207 346 AVSLHDFVKILRLQAGVIVTPGTEFSPHT----ADSIRLNFSQ 384 (405)
T ss_pred CCCHHHHHHHHHHhcCEEEeCchHhCCCC----CCeEEEEecC
Confidence 2 345677777777899999886654322 3579999986
No 145
>PLN02187 rooty/superroot1
Probab=99.86 E-value=6.1e-20 Score=224.61 Aligned_cols=321 Identities=13% Similarity=0.083 Sum_probs=215.4
Q ss_pred CceeeeecCCC------CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCH
Q psy13354 28 NNIELIASENY------TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~n~------l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sG 98 (1342)
..|.+..++.. .++.+.+++.+.+.... ...|+...+..++++++++++...+|. + +.+++++|+
T Consensus 67 ~vi~l~~Gdp~~~p~~~~~~~~~~~~~~~~~~~~------~~~Y~~~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~ 140 (462)
T PLN02187 67 TILPLGHGDPSVYPCFRTCIEAEDAVVDVLRSGK------GNSYGPGAGILPARRAVADYMNRDLPHKLTPEDIFLTAGC 140 (462)
T ss_pred CeEECCCCCCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCH
Confidence 45777777532 22347888777764211 123455666778899788777765553 2 455556588
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++|+..++.++++|||+|+++.+.++.+ .......|..+..+++..++++.+|++++++++++.+..+++. +|+||
T Consensus 141 ~~al~~~~~~l~~pGd~Vlv~~P~y~~y---~~~~~~~g~~~~~~~l~~~~~~~~d~~~l~~~~~~~~~~v~i~-nP~NP 216 (462)
T PLN02187 141 NQGIEIVFESLARPNANILLPRPGFPHY---DARAAYSGLEVRKFDLLPEKEWEIDLEGIEAIADENTVAMVVI-NPNNP 216 (462)
T ss_pred HHHHHHHHHHhcCCCCEEEEeCCCCccH---HHHHHHcCCEEEEEeCccccCCccCHHHHHHhcCCCcEEEEEe-CCCCC
Confidence 9999999999999999999888666544 3345667775555554334568899999999887654445555 45555
Q ss_pred -c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----CcEEEecCCccCCCCCe---eEEEEe-ch-
Q psy13354 179 -Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----ADFITSTTHKSLRGPRG---GFILMK-KK- 244 (1342)
Q Consensus 179 -~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~Divv~S~sK~l~gp~G---G~iv~~-~~- 244 (1342)
+ ...+++|+++|++||++||+||+|....+....+.+.... .-++++||||.| +.+| ||++++ ++
T Consensus 217 TG~v~s~e~l~~i~~~a~~~~i~iI~DE~Y~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f-~~pGlRiG~~v~~~p~~ 295 (462)
T PLN02187 217 CGNVYSHDHLKKVAETARKLGIMVISDEVYDRTIFGDNPFVSMGKFASIVPVLTLAGISKGW-VVPGWKIGWIALNDPEG 295 (462)
T ss_pred CCCccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCceeHHHhccCCcEEEEecchhhc-CCccceeEEEEecCchh
Confidence 2 2258999999999999999999998655433222111111 247789999999 6777 999984 32
Q ss_pred ---hHHHHhhccCCcccc-CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE-eeCCCCCeEEEEE
Q psy13354 245 ---YKKIINSAVFPGIQG-GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI-VSGGTKSHIILVD 319 (1342)
Q Consensus 245 ---l~~~l~~~~~~~~~~-~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~-~~~~~~~~~v~i~ 319 (1342)
+++.+......+..+ +++...+.++..++.+....++++.++.+.++++++.+.|++.+... ...|.+++++|+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~~~L~~~~~~~l~~~~~~l~~~r~~l~~~L~~~~~~~~~~~P~gg~fl~~~ 375 (462)
T PLN02187 296 VFETTKVLQSIKQNLDVTPDPATIIQAALPAILEKADKNFFAKKNKILKHNVDLVCDRLKDIPCVVCPKKPESCTYLLTK 375 (462)
T ss_pred HHHHHHHHHHHHHhccccCCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCCCCCEeEEEEee
Confidence 233444433333332 33456666666555432234788888999999999999999875322 2245677899987
Q ss_pred ccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 320 LRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 320 ~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.. ..+.+++..++.++||.+.|+..++. .+++|++++.
T Consensus 376 l~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~fg~------~~~iRis~~~ 420 (462)
T PLN02187 376 LELSLMDNIKDDIDFCVKLAREENLVFLPGDALGL------KNWMRITIGV 420 (462)
T ss_pred cChhhCCCCCCHHHHHHHHHhhCCEEEECccccCC------CCeEEEEeCC
Confidence 7531 12447778888888999998766642 3579999975
No 146
>KOG0990|consensus
Probab=99.86 E-value=8.4e-21 Score=206.06 Aligned_cols=270 Identities=19% Similarity=0.216 Sum_probs=223.4
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|..||+|..+.++++|+.++..+.+....+++|| .|||||||+|||+...+.++.+.|..
T Consensus 28 ~~pwvekyrP~~l~dv~~~~ei~st~~~~~~~~~lPh-~L~YgPPGtGktsti~a~a~~ly~~~---------------- 90 (360)
T KOG0990|consen 28 PQPWVEKYRPPFLGIVIKQEPIWSTENRYSGMPGLPH-LLFYGPPGTGKTSTILANARDFYSPH---------------- 90 (360)
T ss_pred CCCCccCCCCchhhhHhcCCchhhHHHHhccCCCCCc-ccccCCCCCCCCCchhhhhhhhcCCC----------------
Confidence 4579999999999999999999999999999999997 79999999999999999999998631
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC----c--cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP----I--NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIK 531 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p----~--~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~v 531 (1342)
+...-+.++++++.++++.+++-+....... | ....|+||+||+|.++.+++|+|.+..+....+++
T Consensus 91 -------~~~~m~lelnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT~~AQnALRRviek~t~n~r 163 (360)
T KOG0990|consen 91 -------PTTSMLLELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMTRDAQNALRRVIEKYTANTR 163 (360)
T ss_pred -------CchhHHHHhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhhHHHHHHHHHHHHHhccceE
Confidence 1112356778888888776655444332221 2 23689999999999999999999999999999999
Q ss_pred EEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC--
Q psy13354 532 FILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-- 609 (1342)
Q Consensus 532 lIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~-- 609 (1342)
|++.++.+.++.+++++||..++|.+++..+....+..+++.+.+.++++....+++.+.||+|.+++.|+-...+..
T Consensus 164 F~ii~n~~~ki~pa~qsRctrfrf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDmr~a~n~Lqs~~~~~~~~ 243 (360)
T KOG0990|consen 164 FATISNPPQKIHPAQQSRCTRFRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDMRVALNYLQSILKKVMER 243 (360)
T ss_pred EEEeccChhhcCchhhcccccCCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999998766643
Q ss_pred --CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHH
Q psy13354 610 --EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQ 671 (1342)
Q Consensus 610 --~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~~~~~~il~~L~~~~r~ 671 (1342)
..++.+.|..+.+.....++.++++.++.+....+..-+..+.. .|.+-..++..+..++..
T Consensus 244 ~e~~~~~~~vy~c~g~p~~~dI~~I~~~il~~~~~~~~~~is~lk~~~gla~~d~i~~l~~~~~~ 308 (360)
T KOG0990|consen 244 KELNNPNDLVYQCKGAPQPSDIRQIIEKRMNGEDIELMLDDSELKKPKGLARQDRRAELEQRFAI 308 (360)
T ss_pred CCCCCchhhHHHhcCCCChhHHHHHHHHHhcCchHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHH
Confidence 23778889999999988999999999999888666555555443 233444455555444433
No 147
>PRK08636 aspartate aminotransferase; Provisional
Probab=99.86 E-value=1.6e-19 Score=218.65 Aligned_cols=321 Identities=15% Similarity=0.134 Sum_probs=215.5
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
.+.+.+..+... .++.+.+++...+... ....|+...+..++++++++++.+.+|.+ + .+++++|+++
T Consensus 33 ~~~~~l~~g~p~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~ 106 (403)
T PRK08636 33 EDIIDFSMGNPDGPTPQHIIDKLCESAQKP------KTHGYSVSKGIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKE 106 (403)
T ss_pred CCEEEcCCcCCCCCCCHHHHHHHHHHhcCC------ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHH
Confidence 345777665433 3444666665554211 11234555667789998888888877743 3 4666658888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHH----HHHHHh--cCCeEEEEcC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKV----EYLAKK--NKPKLIIAGA 174 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~L----e~~i~~--~~~~liv~~~ 174 (1342)
|+..++.+++.|||.|++.++.++.+ ...+...|..+..++++.++++.+|++.+ +++++. .+.+++++++
T Consensus 107 al~~~~~~l~~~gd~Vlv~~P~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~i~~~~ 183 (403)
T PRK08636 107 GYVHLVQAITNPGDVAIVPDPAYPIH---SQAFILAGGNVHKMPLEYNEDFELDEDQFFENLEKALRESSPKPKYVVVNF 183 (403)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHhcCCEEEEEeccccccCccChhhhhhHHHHHHhhccCCceEEEEeC
Confidence 99999999999999999877555544 44456677754555444345578898754 555553 3456777776
Q ss_pred CCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC---CcEEEecCCccCCCCCe---eEEEE
Q psy13354 175 SAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF---ADFITSTTHKSLRGPRG---GFILM 241 (1342)
Q Consensus 175 s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~---~Divv~S~sK~l~gp~G---G~iv~ 241 (1342)
|+|| +...+++|+++|++|+++||+||+|....+.....++. ++. ..++++||||.+ |.+| ||+++
T Consensus 184 P~NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlRiG~iv~ 262 (403)
T PRK08636 184 PHNPTTATVEKSFYERLVALAKKERFYIISDIAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSY-NMAGWRVGFVVG 262 (403)
T ss_pred CCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccchhhccCCCCCCChhcCCCccccEEEEEeccccc-CCccceeeeeeC
Confidence 6666 33368999999999999999999998654432122211 111 235578999999 6566 99999
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEcc
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~ 321 (1342)
++++++.+.........+ +..+.+.++..++.. ...++++.++.+.++++.+.+.|.+.|+.+. .+.+++++|++++
T Consensus 263 ~~~li~~~~~~~~~~~~~-~~~~~q~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~p~~g~~~~~~l~ 339 (403)
T PRK08636 263 NKKLVGALKKIKSWLDYG-MFTPIQVAATIALDG-DQSCVEEIRETYRKRRDVLIESFANAGWELQ-KPRASMFVWAKIP 339 (403)
T ss_pred CHHHHHHHHHHHHHhccc-CChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCcceEEEEECC
Confidence 999888876643222222 224455544444322 2346777888899999999999999887653 3567899999997
Q ss_pred CCC---CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 322 NKK---ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 322 ~~~---~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+.. .+.+++..+++++||.+.|+..++... .+++|++++
T Consensus 340 ~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~~~----~~~iRi~~~ 381 (403)
T PRK08636 340 EPARHLGSLEFSKQLLTEAKVAVSPGIGFGEYG----DEYVRIALI 381 (403)
T ss_pred CccCCCCHHHHHHHHHHhCCEEEecchhhCcCC----CCeEEEEec
Confidence 532 245777788888899999876654332 357999986
No 148
>PLN02409 serine--glyoxylate aminotransaminase
Probab=99.86 E-value=5.9e-20 Score=221.69 Aligned_cols=315 Identities=12% Similarity=0.110 Sum_probs=226.6
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al 106 (1342)
.+.+.+++..+++.|++++...+.. + ......++.+++++.+++++|.+ +.++++++|+.++..++
T Consensus 10 ~~l~~pGP~~~~~~V~~a~~~~~~~-----~-------~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~ 77 (401)
T PLN02409 10 NHLFVPGPVNIPERVLRAMNRPNED-----H-------RSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESAL 77 (401)
T ss_pred ceeccCCCCCCCHHHHHHhcCCCCC-----C-------CCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHH
Confidence 3457788889999999997654321 1 12345677888999999999986 46777779999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcC-CCCC-ccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGA-SAYS-QYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~-s~~~-~~~ 181 (1342)
..++++||+|++....+.+.. ....++..|..+..+ +.+.++.+|++++++.+++ .++++++++. .+.+ ...
T Consensus 78 ~~~~~~Gd~Vlv~~~~~~~~~-~~~~~~~~g~~v~~v--~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~ 154 (401)
T PLN02409 78 TNTLSPGDKVVSFRIGQFSLL-WIDQMQRLNFDVDVV--ESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTN 154 (401)
T ss_pred HhcCCCCCEEEEeCCCchhHH-HHHHHHHcCCceEEE--ECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccC
Confidence 999999999998774443221 234456667755555 4444445799999999986 2456555544 3333 555
Q ss_pred CHHHHHHH--HHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC-C-
Q psy13354 182 DFERFYHI--AKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF-P- 255 (1342)
Q Consensus 182 ~l~~I~~l--a~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~-~- 255 (1342)
|+++|.++ |+++|+++++|++|+.|... ..... .+|++++|.||||++|.| |+++.+++.++.+..... +
T Consensus 155 ~~~~i~~l~~~~~~g~~~vvD~v~s~g~~~----id~~~~~~D~~~~s~~K~l~~P~G~G~l~~~~~~~~~~~~~~~~~~ 230 (401)
T PLN02409 155 DLAGVRKLLDCAQHPALLLVDGVSSIGALD----FRMDEWGVDVALTGSQKALSLPTGLGIVCASPKALEASKTAKSPRV 230 (401)
T ss_pred CHHHHHHHHhhhccCcEEEEEcccccCCcc----ccccccCccEEEEcCccccCcCCCcceeEECHHHHHHHhcCCCCCe
Confidence 99999999 99999999999999876541 11111 369999999999988888 999999988777654211 0
Q ss_pred ---------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC--C-eEEE
Q psy13354 256 ---------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK--S-HIIL 317 (1342)
Q Consensus 256 ---------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~--~-~~v~ 317 (1342)
+..++++.+...++..++......+++.+.+++.++++++.+.|.+.|++++.+... . .+++
T Consensus 231 ~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~~~~~~~~~~s~~v~~ 310 (401)
T PLN02409 231 FFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLKLCTKKPEWRSDTVTA 310 (401)
T ss_pred ecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcccceEE
Confidence 002356666777777777776666788999999999999999999999987653211 2 3456
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+++.....++...+++++||.+.++..+.. ...+|+|...+++
T Consensus 311 ~~~p~~~~~~~l~~~l~~~~~i~i~~G~~~~~------~~~~Rig~~g~~~ 355 (401)
T PLN02409 311 VVVPEGIDSAEIVKNAWKKYNLSLGLGLNKVA------GKVFRIGHLGNVN 355 (401)
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEEcCCCccc------CCEEEEcCCCCCC
Confidence 76665444456777888889999997654322 2469999998765
No 149
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=99.86 E-value=9.2e-20 Score=220.62 Aligned_cols=325 Identities=17% Similarity=0.173 Sum_probs=218.9
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al-- 109 (1342)
++..+.|+.+++++.+.+...+ +.+.+..+.......+..+.+++.+++++|.+ +.+++++|+|+++..++.++
T Consensus 23 a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~ 100 (398)
T TIGR03392 23 AATALKPQAVIDATQQFYRLSS--GTVHRSQHQQAQSLTARYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYAR 100 (398)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhh
Confidence 4456788889999888775332 23322222222333455566888999999984 56777779999999999887
Q ss_pred --cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
+++||+|++++..|++....+ ......|. +++.++.+.++.+|+++++++++++ +++++++.++++ ...|++
T Consensus 101 ~~~~~gd~Vl~~~~~~~s~~~~~~~~~~~~g~--~v~~v~~~~~~~~~~~~l~~~i~~~-t~lv~i~~~~n~tG~~~~~~ 177 (398)
T TIGR03392 101 PRLQPGDEIIVSEAEHHANLIPWLMVAQQTGA--KVVKLPIGADLLPDIRQLPELLTPR-TRILALGQMSNVTGGCPDLA 177 (398)
T ss_pred ccCCCCCEEEECCcchhHHHHHHHHHHHHcCc--EEEEEecCCCCCcCHHHHHHHhccC-ceEEEEECccccccccCCHH
Confidence 579999998887766543333 33456677 4455566666788999999998764 556555554444 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---------- 253 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---------- 253 (1342)
+|+++|+++|+++++|++|+.|...... .. -.+|++++|+||.+ ||.| |++++++++++.+....
T Consensus 178 ~i~~~~~~~~~~~ivD~a~~~~~~~~~~--~~-~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 253 (398)
T TIGR03392 178 RAITLAHQYGAVVVVDGAQGVVHGPPDV--QA-LDIDFYAFSGHKLY-GPTGIGVLYGKTELLEAMPPWQGGGKMLSHVS 253 (398)
T ss_pred HHHHHHHHcCCEEEEEhhhhcCCCCCCh--hh-cCCCEEEEeccccc-CCCceEEEEEcHHHHhhCCCeecCCceEeecc
Confidence 9999999999999999999876542110 00 13699999999977 8888 99999998877664321
Q ss_pred ----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC
Q psy13354 254 ----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 254 ----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~ 322 (1342)
..+-.|+++.+...++..++....+.+++.+.++..+.++++.+.|.+. |+.+... ...+++++.+++
T Consensus 254 ~~~~~~~~~~~~~e~GT~~~~~~~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~l~g~~~~~~-~~~~i~~~~~~~ 332 (398)
T TIGR03392 254 FDGFIPQAVPHRFEAGTPNIAGVIGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQLPGFRSFRC-PGSSLLAFDFAG 332 (398)
T ss_pred ccccccCCChhhccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCC-CCCcEEEEEeCC
Confidence 1112356666677777777665544466777888899999999999885 7776542 345677776653
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccc-cccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPE-KPY-FTSGIRLGSSAITTRG 370 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~-~~~~lRi~~~~~~t~~ 370 (1342)
. .+.++. ..|+++||.+.++.....+- ..+ ..+.+|+|++.++|.+
T Consensus 333 ~-~~~~l~-~~L~~~gI~v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ 380 (398)
T TIGR03392 333 V-HHSDLA-ALLAESGIALRAGQHCAQPLMAALGVSGTLRASFAPYNTQQ 380 (398)
T ss_pred c-CHHHHH-HHHHhCCEEEecCccchHHHHHHhCCCCEEEEEeeccCCHH
Confidence 2 233444 44566799998654221100 000 0357999999987753
No 150
>PRK09147 succinyldiaminopimelate transaminase; Provisional
Probab=99.86 E-value=7.5e-20 Score=221.09 Aligned_cols=337 Identities=11% Similarity=0.034 Sum_probs=223.1
Q ss_pred cccccchHHHHHHHHHHHh-----ccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQR-----QNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAI 79 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~-----~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~ 79 (1342)
.+..+.+.....+...... .++.+.+..+++.. ++.+.+++.+.+.. . ..|+...+..+++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~~-~-------~~Y~~~~G~~~lr~~ia 75 (396)
T PRK09147 4 RLDRLQPYPFEKLRALFAGVTPPADLPPISLSIGEPKHPTPAFIKDALAANLDG-L-------ASYPTTAGLPALREAIA 75 (396)
T ss_pred hhhcCCcchHHHHHHHHHhhhhccCCCeEecCCCCCCCCCCHHHHHHHHHHhhh-h-------cCCCCCCCCHHHHHHHH
Confidence 3444444444444443322 24668888777544 33477776665421 1 12444445568889888
Q ss_pred HHHHHHhCCC----C-ceEecCCHHHHHHHHHHHccCC---CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--C
Q psy13354 80 NRLKKIFNAE----A-ANVQPHSGSQANQAVFFSVLNP---GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--K 149 (1342)
Q Consensus 80 ~~la~~~g~~----~-~vi~~~sGs~A~~~al~al~~p---GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~ 149 (1342)
+++.+.+|.+ + .+++++|+++|+..++.++++| ||.|+++.+.++.+ .......|. ++++++.+ +
T Consensus 76 ~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l~~~~~~gd~vlv~~P~y~~~---~~~~~~~g~--~~~~vp~~~~~ 150 (396)
T PRK09147 76 AWLERRYGLPALDPATQVLPVNGSREALFAFAQTVIDRDGPGPLVVCPNPFYQIY---EGAALLAGA--EPYFLNCDPAN 150 (396)
T ss_pred HHHHHHhCCCcCCccceEEECCChHHHHHHHHHHHcCCCCCCCEEEEcCCCccch---HHHHHhcCC--EEEEeccCccc
Confidence 8888777743 3 5666658888999999999999 89999776555433 344456676 45555554 4
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCCC------
Q psy13354 150 KEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNPV------ 217 (1342)
Q Consensus 150 ~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~l------ 217 (1342)
+|.+|++.+++.+.+ +++++++++++|| +...+++|+++|++|+++||+||+|....+... .....+
T Consensus 151 ~~~~d~~~l~~~~~~-~~k~i~l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~ 229 (396)
T PRK09147 151 NFAPDFDAVPAEVWA-RTQLLFVCSPGNPTGAVLPLDDWKKLFALSDRYGFVIASDECYSEIYFDEAAPPLGLLEAAAEL 229 (396)
T ss_pred cCccCHHHHHHHHhh-ccEEEEEcCCCCCcCccCCHHHHHHHHHHHHHcCeEEEeeccccccccCCCCCCchhhhhcccc
Confidence 578999999887765 5677777777777 333789999999999999999999986544321 111111
Q ss_pred --C--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy13354 218 --P--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290 (1342)
Q Consensus 218 --~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~ 290 (1342)
+ ...++++||||.+ +.+| ||+++++++++.+......... +.....+.++..++. ...++++.++.+.+
T Consensus 230 ~~~~~~~vi~~~S~SK~~-~~~GlRiG~~~~~~~l~~~~~~~~~~~~~-~~~~~~q~a~~~~~~--~~~~~~~~~~~~~~ 305 (396)
T PRK09147 230 GRDDFKRLVVFHSLSKRS-NVPGLRSGFVAGDAALLKKFLLYRTYHGC-AMPPAVQAASIAAWN--DEAHVRENRALYRE 305 (396)
T ss_pred CccccccEEEEecccccc-CCccceeeeecCCHHHHHHHHHHhhhccc-CCCHHHHHHHHHHhc--chhHHHHHHHHHHH
Confidence 0 1238889999988 6666 9999999988887653322222 233344444444432 22367777888999
Q ss_pred HHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCC--CCccccccccccccc
Q psy13354 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDP--EKPYFTSGIRLGSSA 365 (1342)
Q Consensus 291 ~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~--~~~~~~~~lRi~~~~ 365 (1342)
+++.+.+.|.+. +.+. .+.+++++|++++ ..+.+++..+++++||.+.++..++.. ......+++|++++.
T Consensus 306 ~~~~~~~~L~~~-~~~~-~p~~g~f~~~~~~--~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~~~~~iRi~~~~ 378 (396)
T PRK09147 306 KFDAVTPILAPV-LDVQ-LPDAGFYLWAKVP--GDDTEFARRLYADYNVTVLPGSYLAREAHGVNPGAGRVRIALVA 378 (396)
T ss_pred HHHHHHHHHHHh-cCCC-CCCeeEEEEEECC--CCHHHHHHHHHHhCCEEEeCCccccccccCCCCCCCeEEEEecC
Confidence 999999998874 4432 3567899999987 235677888888889999988765432 111124679999885
No 151
>PRK06348 aspartate aminotransferase; Provisional
Probab=99.86 E-value=1.3e-19 Score=218.09 Aligned_cols=335 Identities=13% Similarity=0.098 Sum_probs=220.0
Q ss_pred cccchHHHHHHHHHHHhccCceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 9 SKIDPKIWEIILKEKQRQNNNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
+.........+..........+.+..+++.+++ .+++++....... ...|+...+..++++++++++...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~G~~~lr~~ia~~~~~~~ 83 (384)
T PRK06348 11 QQMEVNIMAEIATLAKKFPDIIDLSLGDPDLITDESIINAAFEDAKKG-------HTRYTDSGGDVELIEEIIKYYSKNY 83 (384)
T ss_pred hcCCccHHHHHHHHHHhcCCcEEcCCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCcHHHHHHHHHHHHHHh
Confidence 333444444443333333455777777655433 3555544443211 1234555566788898888887665
Q ss_pred CCC---CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--CCCCCCCHHHHHHH
Q psy13354 87 NAE---AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--NKKEKIDYKKVEYL 161 (1342)
Q Consensus 87 g~~---~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~ 161 (1342)
|.. +.+++++|+++|+..++.++++|||+|++..+.++.+ ...+...|. .+++++. ++++.+|++++++.
T Consensus 84 ~~~~~~~~i~it~G~~~al~~~~~~~~~~gd~vlv~~p~y~~~---~~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~ 158 (384)
T PRK06348 84 DLSFKRNEIMATVGACHGMYLALQSILDPGDEVIIHEPYFTPY---KDQIEMVGG--KPIILETYEEDGFQINVKKLEAL 158 (384)
T ss_pred CCCCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCCcch---HHHHHHcCC--EEEEecCCcCcCCcCCHHHHHHh
Confidence 543 4455565888999999999999999999877555544 344455566 4455554 34567999999998
Q ss_pred HHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC---CCcEEEecCCccC
Q psy13354 162 AKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP---FADFITSTTHKSL 231 (1342)
Q Consensus 162 i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~---~~Divv~S~sK~l 231 (1342)
+++ +++++++++++|| +...+++|+++|++||++||+||+|....+.. .+.+. +. ...++++||||.+
T Consensus 159 ~~~-~~~~v~l~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~ 236 (384)
T PRK06348 159 ITS-KTKAIILNSPNNPTGAVFSKETLEEIAKIAIEYDLFIISDEVYDGFSFYE-DFVPMATLAGMPERTITFGSFSKDF 236 (384)
T ss_pred hCc-CccEEEEeCCCCCCCcCCCHHHHHHHHHHHHHCCeEEEEecccccceeCC-CccchhhcCCCcCcEEEEecchhcc
Confidence 865 4556666566666 22268999999999999999999998654432 21111 11 1357889999999
Q ss_pred CCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEe
Q psy13354 232 RGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIV 307 (1342)
Q Consensus 232 ~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~ 307 (1342)
|.+| ||+++++++++.+........++ ++...+.++..++. ....+.+..++.+.++++++.+.|.+. ++.+.
T Consensus 237 -~l~GlRiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~-~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~~ 313 (384)
T PRK06348 237 -AMTGWRIGYVIAPDYIIETAKIINEGICFS-APTISQRAAIYALK-HRDTIVPLIKEEFQKRLEYAYKRIESIPNLSLH 313 (384)
T ss_pred -CCccccceeeecCHHHHHHHHHHHHhccCC-CCHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHhcCCCceec
Confidence 6556 99999998888877643333333 23445555544443 333356677888889999999999875 55543
Q ss_pred eCCCCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+++++|+.++.. ..+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 314 -~p~gg~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 367 (384)
T PRK06348 314 -PPKGSIYAFINIKKTGLSSVEFCEKLLKEAHVLVIPGKAFGESG----EGYIRLACTV 367 (384)
T ss_pred -cCCeeEEEEEecccCCCCHHHHHHHHHHhCCEEEcCchhhccCC----CCeEEEEecC
Confidence 355678899998753 3456777778888899999876664322 3679999863
No 152
>PRK07777 aminotransferase; Validated
Probab=99.86 E-value=1.3e-19 Score=218.32 Aligned_cols=342 Identities=11% Similarity=0.082 Sum_probs=224.4
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
.+.+..+.....+...... ...+.|..+... .++.+.+++.+.+... ...|....+..++++++++++.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~ 76 (387)
T PRK07777 5 RLRPFGTTIFAEMSALAVR-TGAVNLGQGFPDEDGPPEMLEAAQEAIAGG-------VNQYPPGPGIPELRAAIAAQRRR 76 (387)
T ss_pred hhhhcCccHHHHHHHHHhh-CCeEEccCCCCCCCCCHHHHHHHHHHHhcC-------CCCCCCCCCCHHHHHHHHHHHHH
Confidence 4444444444444333332 355777766522 2344666655555321 12345556667899988888887
Q ss_pred HhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHH
Q psy13354 85 IFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVE 159 (1342)
Q Consensus 85 ~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le 159 (1342)
.+|.+ +.+++++||++|+..++.+++.+||+|++..+.++. ....+...|..+..+++..+ .++.+|+++++
T Consensus 77 ~~g~~~~~~~~i~~t~G~~~al~~~~~~~~~~gd~vli~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~ 153 (387)
T PRK07777 77 RYGLEYDPDTEVLVTVGATEAIAAAVLGLVEPGDEVLLIEPYYDS---YAAVIAMAGAHRVPVPLVPDGRGFALDLDALR 153 (387)
T ss_pred HhCCCCCCCCcEEEeCCcHHHHHHHHHHhcCCCCEEEEeCCCchh---hHHHHHHCCCEEEEeecCCccCCCcCCHHHHH
Confidence 77764 246666688999999999999999999987755543 34445566764444433222 24679999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCc
Q psy13354 160 YLAKKNKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK 229 (1342)
+.+.+ +++++++++++|| + ..++++|+++|++|+++||+|++|....+....+.+.. ...+++++|+||
T Consensus 154 ~~~~~-~~~~v~l~~p~NPtG~~~~~~~~~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK 232 (387)
T PRK07777 154 AAVTP-RTRALIVNSPHNPTGTVLTAAELAAIAELAVEHDLLVITDEVYEHLVFDGARHLPLATLPGMRERTVTISSAAK 232 (387)
T ss_pred HhcCc-ccEEEEEcCCCCCCCccCCHHHHHHHHHHHHhcCcEEEEeccchhcccCCCCcccHhhCCCCcCcEEEEeechh
Confidence 98865 4567677666666 2 23699999999999999999999975544222111111 124688999999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.| |.+| ||+++++++++.+........++ ...+.+.++..++.. ...+.+..++.+.++++++.+.|.+.|+++
T Consensus 233 ~~-g~~GlRiG~~~~~~~l~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~ 309 (387)
T PRK07777 233 TF-NVTGWKIGWACGPAPLIAAVRAAKQYLTYV-GGAPFQPAVAHALDH-EDAWVAALRDSLQAKRDRLAAGLAEAGFEV 309 (387)
T ss_pred hc-cCcCceeEEEecCHHHHHHHHHHHhhcccC-CCCHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence 99 6556 99999998888877543322222 223444444444432 234677788899999999999999988776
Q ss_pred eeCCCCCeEEEEEccC--CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRN--KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.. +.+++++|+.++. ...+.+++..+++++||.+.|+..++.... ...+++|++++.
T Consensus 310 ~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~-~~~~~~Ri~~~~ 368 (387)
T PRK07777 310 HD-SAGTYFLCADPRPLGYDDGTEFCRALPERVGVAAIPMSVFYDPAD-AWNHLVRFAFCK 368 (387)
T ss_pred cC-CCcceEEEecccccCCCCHHHHHHHHHHhCCEEEeCchHhCCCCc-CCCCeEEEEecC
Confidence 43 4567889988753 224567888888888999998765542211 114579999875
No 153
>PRK07550 hypothetical protein; Provisional
Probab=99.86 E-value=1.2e-19 Score=218.62 Aligned_cols=318 Identities=12% Similarity=0.067 Sum_probs=214.3
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~ 102 (1342)
..+.+..+++..+ +.+.+++.+.+.+. ....|+...+..++++++++++.+..|.. +.+++++|+++|+
T Consensus 30 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al 103 (386)
T PRK07550 30 PLIDLSQAVPGYPPPPELLRALAEAAADP------AAHLYGPVEGLPELREAYAAHYSRLYGAAISPEQVHITSGCNQAF 103 (386)
T ss_pred CeEEeCCCCCCCCCCHHHHHHHHHHHhCc------CCcCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 4577877775443 33777766655311 11224445567799998888888877743 4556665778899
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
..++.+++++||+|++..+.++.+ ...+...|. ++++++.+ .++.+|++++++.+++..+.+++++ ++|| +
T Consensus 104 ~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~--~~~~v~~~~~~~~~~~~~~l~~~~~~~~~~v~~~~-P~NPtG 177 (386)
T PRK07550 104 WAAMVTLAGAGDEVILPLPWYFNH---KMWLDMLGI--RPVYLPCDEGPGLLPDPAAAEALITPRTRAIALVT-PNNPTG 177 (386)
T ss_pred HHHHHHhcCCCCEEEEcCCCCcch---HHHHHhcCC--EEEEEecCCCcCCCCCHHHHHHHhcccCcEEEEeC-CCCCCC
Confidence 999999999999999777555433 444566677 44554554 4567899999999876544555554 4455 2
Q ss_pred c----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 180 Y----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 180 ~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
. .++++|+++|++||++||+|++|+............+. ...++++||||.+ |..| ||+++++++++
T Consensus 178 ~~~~~~~~~~i~~~~~~~~~~iI~Dd~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~i~~~~~~~~ 256 (386)
T PRK07550 178 VVYPPELLHELYDLARRHGIALILDETYRDFDSGGGAPHDLFADPDWDDTLVHLYSFSKSY-ALTGHRVGAVVASPARIA 256 (386)
T ss_pred cccCHHHHHHHHHHHHHcCeEEEEeccchhhccCCCCCcchhhCCCccccEEEEecchhhc-cCcccceEeeecCHHHHH
Confidence 2 25899999999999999999998754332221111211 1246789999999 5444 99999998888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC-CCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN-KKI 325 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~-~~~ 325 (1342)
.+.........+ ++...+.++..++.. ..++.++.++.+.++++++.+.|.+. ++.+ .+.+++++|+.++. ...
T Consensus 257 ~~~~~~~~~~~~-~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~g~~~~~~~~~~~~~~ 332 (386)
T PRK07550 257 EIEKFMDTVAIC-APRIGQIAVAWGLPN-LADWRAGNRAEIARRRDAFRAVFARLPGWEL--LASGAYFAYVRHPFPDRP 332 (386)
T ss_pred HHHHHHhhcccC-CCcHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHHhCCCcee--CCCceEEEEecCCCCCCC
Confidence 777644333332 334444544444433 33466677888999999999999885 6654 34567899999875 344
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.+++..+++++||.+.++..++... ..++|++++..
T Consensus 333 ~~~l~~~l~~~~gv~v~pg~~f~~~~----~~~iRis~~~~ 369 (386)
T PRK07550 333 SREVARRLAKEAGILCLPGTMFGPGQ----EGYLRLAFANA 369 (386)
T ss_pred HHHHHHHHHHhcCEEEeCchhhCCCC----CCEEEEEeecC
Confidence 56778888888899999876664321 35799999753
No 154
>PRK05764 aspartate aminotransferase; Provisional
Probab=99.86 E-value=1.7e-19 Score=218.01 Aligned_cols=344 Identities=15% Similarity=0.135 Sum_probs=225.8
Q ss_pred CccccccccccchHHHHHHHHHHHh----ccCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHH
Q psy13354 1 MIIKNENLSKIDPKIWEIILKEKQR----QNNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLI 74 (1342)
Q Consensus 1 m~~~~~~~~~~~~~~~~~~~~~~~~----~~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~L 74 (1342)
||-.++++..+++.....+...... ....+.+..+++.++ +.+.+++.+.+.+.. ..|+...+...+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~Y~~~~g~~~l 73 (393)
T PRK05764 1 MMKLSKRVSRVTPSATLAVTAKAKELKAQGRDVISLGAGEPDFDTPEHIKEAAIEALDDGK-------TKYTPAAGIPEL 73 (393)
T ss_pred CcchhhhhhhcCchHHHHHHHHHHHHHhccCCEEEeCCCCCCCCCCHHHHHHHHHHHhcCC-------CCcCCCCChHHH
Confidence 4334556666555444333322221 245577777765544 457777766664211 124445566788
Q ss_pred HHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCC
Q psy13354 75 EKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151 (1342)
Q Consensus 75 e~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~ 151 (1342)
++.+++++...+|.. +.+++++|+++|+..++.+++.+||.|+++.+.+++ ....+...|..+..++...++++
T Consensus 74 r~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~ 150 (393)
T PRK05764 74 REAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMALLDPGDEVIIPAPYWVS---YPEMVKLAGGVPVFVPTGEENGF 150 (393)
T ss_pred HHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHhcCCCCEEEecCCCCcc---hHHHHHHcCCEEEEEecCcccCC
Confidence 887888877666642 345556588899999999999999999987755544 34445666774444433323457
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C--C--CC
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V--P--FA 220 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l--~--~~ 220 (1342)
.+|++.+++.+.+ ..+++++++++|| +. .++++|+++|++||+++|+|++|+...+......+. + + ..
T Consensus 151 ~~d~~~l~~~l~~-~~~~v~~~~p~NPtG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~ 229 (393)
T PRK05764 151 KLTVEQLEAAITP-KTKALILNSPSNPTGAVYSPEELEAIADVAVEHDIWVLSDEIYEKLVYDGAEFTSIASLSPELRDR 229 (393)
T ss_pred cCCHHHHHHhhCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHHCCcEEEEeccccceeeCCCCcccHHHcCCCCcCC
Confidence 8899999998865 4455555565655 22 368999999999999999999987554322111111 1 1 24
Q ss_pred cEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q psy13354 221 DFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 221 Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~ 297 (1342)
+++++|+||++ |+.| ||+++++++++.+......+.. +++...+.++...+.. ...++++.++++.++++.+.+
T Consensus 230 ~i~~~s~SK~~-~~~G~RiG~i~~~~~~~~~~~~~~~~~~~-~~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~ 306 (393)
T PRK05764 230 TITVNGFSKAY-AMTGWRLGYAAGPKELIKAMSKLQSHSTS-NPTSIAQYAAVAALNG-PQDEVEEMRQAFEERRDLMVD 306 (393)
T ss_pred EEEEecCcccc-cCccceeEEEecCHHHHHHHHHHHhhccc-CCChHHHHHHHHHHcC-ChHHHHHHHHHHHHHHHHHHH
Confidence 68899999999 6566 9999999988888764333222 2333444444434331 234667778888999999999
Q ss_pred HHHhC-CcEEeeCCCCCeEEEEEccCCCC-----CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 298 ILDQR-GIRIVSGGTKSHIILVDLRNKKI-----TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 298 ~L~~~-g~~~~~~~~~~~~v~i~~~~~~~-----~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.|++. |+.+.. +.+++++|+.++.... +.++...+++++||.+.++..++. .+++|++++.
T Consensus 307 ~L~~~~g~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~vRis~~~ 373 (393)
T PRK05764 307 GLNEIPGLECPK-PEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAFGA------PGYVRLSYAT 373 (393)
T ss_pred HHhhCCCCcccC-CCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEccccccCC------CCEEEEEecC
Confidence 99987 877643 5667888988875432 257778888888999987655533 3579999864
No 155
>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]
Probab=99.86 E-value=9e-20 Score=208.01 Aligned_cols=324 Identities=16% Similarity=0.154 Sum_probs=235.4
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--c
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV--L 110 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al--~ 110 (1342)
+...++.|.++++|...+...| |+|++-+ ..+.....+.+.+++.+++++|++ ..++|+.+||++++.++... .
T Consensus 8 ~ATTp~~~~v~~~m~~~~~~~f--gNPsS~H-~~G~~A~~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a 84 (386)
T COG1104 8 AATTPVDPEVLEAMLPYLTEVF--GNPSSLH-SFGREARKAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALA 84 (386)
T ss_pred cccCCCCHHHHHHHHHHHHhhc--CCccchh-HhHHHHHHHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHh
Confidence 3466888889999999997654 7777743 334445566666999999999998 57778879999999998873 2
Q ss_pred ----CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 111 ----NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 111 ----~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
..|.+|+++..+|++....+..++..|. ++.+++++.+|.+|+++|++++++++.-+-++..+|.. ...|+++
T Consensus 85 ~~~~~~~~HIIts~iEH~aVl~~~~~Le~~g~--~Vtyl~V~~~G~v~~e~L~~al~~~T~LVSim~aNnE~G~IQpI~e 162 (386)
T COG1104 85 YRNAQKGKHIITSAIEHPAVLNTCRYLERQGF--EVTYLPVDSNGLVDLEQLEEALRPDTILVSIMHANNETGTIQPIAE 162 (386)
T ss_pred hhcccCCCeEEEcccccHHHHHHHHHHHhcCC--eEEEeCCCCCCeEcHHHHHHhcCCCceEEEEEecccCeeecccHHH
Confidence 2578999999999888777777766677 55555778899999999999999877666555555544 6669999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHH--Hhhc--cCCcccc
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKI--INSA--VFPGIQG 259 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~--l~~~--~~~~~~~ 259 (1342)
|.++|+++|+++++|.+|++|.+.-+ ... .+|++++|.||.. ||.| |+++.++...-. +.-. -...-.|
T Consensus 163 i~~i~k~~~i~fHvDAvQa~Gkipi~----~~~~~vD~ls~SaHK~~-GpkGiGaLyv~~~~~~~p~i~GGgQE~g~RsG 237 (386)
T COG1104 163 IGEICKERGILFHVDAVQAVGKIPID----LEELGVDLLSFSAHKFG-GPKGIGALYVRPGVRLEPLIHGGGQERGLRSG 237 (386)
T ss_pred HHHHHHHcCCeEEEehhhhcCceecc----ccccCcceEEeehhhcc-CCCceEEEEECCCCccCceeccCcCCCCCCCC
Confidence 99999999999999999999877211 111 2799999999999 9999 999987743211 1110 0122346
Q ss_pred CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCC--CCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 260 GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGG--TKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 260 ~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~--~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+.+.+..++++.|+..... .++....++...+++|.+.|.+. ++.+...+ .-.+.+.+.++. ...+.+...|+
T Consensus 238 Tenv~~Ivg~~~A~~~a~~-~~~~~~~~~~~lr~~l~~~l~~~~p~~~~~g~~~~rlP~~~~~~f~g--v~gE~ll~~L~ 314 (386)
T COG1104 238 TENVPGIVGFGKAAEIAVE-ELEEENARLRKLRDRLEDGLLEIIPDVYLNGDDEPRLPNILNFSFPG--VEGESLLLALD 314 (386)
T ss_pred CccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCcEEEcCCcccCCCCeEEEEeCC--CcHHHHHHhcc
Confidence 7778888888888777664 77778889999999999999975 33332221 112455566554 45688888899
Q ss_pred HCCceeeeccC-CCCCCC------------cccccccccccccccccc
Q psy13354 336 SANIICNKNSI-PNDPEK------------PYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 336 ~~GI~v~~~~~-p~~~~~------------~~~~~~lRi~~~~~~t~~ 370 (1342)
.+||.++.++. ...... ....+.+|||++..+|.+
T Consensus 315 ~~gI~vStGSACsS~~~~pShVL~AmG~~~e~a~~siR~S~g~~tt~e 362 (386)
T COG1104 315 LAGIAVSTGSACSSGSLEPSHVLRAMGISEELAHGSIRFSLGRFTTEE 362 (386)
T ss_pred ccCeEEeccccccCCCCCccHHHHHcCCChHHhCccEEEEcCCCCCHH
Confidence 89999997542 111000 111256999999988853
No 156
>PLN02656 tyrosine transaminase
Probab=99.86 E-value=1.3e-19 Score=219.63 Aligned_cols=321 Identities=14% Similarity=0.068 Sum_probs=215.0
Q ss_pred cCceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCC
Q psy13354 27 NNNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHS 97 (1342)
Q Consensus 27 ~~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~s 97 (1342)
.+.++|..+++ + .++.+++++.+++..... ..|+...+..++++++++++...+|.. +.+++++|
T Consensus 31 ~~~i~l~~G~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G 104 (409)
T PLN02656 31 KRVISLGMGDPTAYSCFHTTHVAQEAVVDALQSNKF------NGYAPTVGLPQARRAIAEYLSRDLPYKLSLDDVFITSG 104 (409)
T ss_pred CeeeecCCCCCCcCCCCCCCHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHHhcCCCCCcccEEEeCC
Confidence 45688887765 2 345588888777753211 124444556688887777777665532 44555558
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+++|+..++.++++|||+|+++++.++.+ .......|..+..+++..++++.+|++.+++.+++.++.+++.+++|+
T Consensus 105 ~~~al~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~~~~~v~l~~P~NP 181 (409)
T PLN02656 105 CTQAIDVALSMLARPGANILLPRPGFPIY---ELCAAFRHLEVRYVDLLPEKGWEVDLDAVEALADQNTVALVIINPGNP 181 (409)
T ss_pred hHHHHHHHHHHHhCCCCeEEEeCCCCCcH---HHHHHHcCCEEEEEeCCCcCCCCCCHHHHHHHhccCceEEEEECCCCC
Confidence 89999999999999999999887666543 333455677544444322345789999999988765555555554433
Q ss_pred Ccc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC--CCcEEEecCCccCCCCCe---eEEEEe----
Q psy13354 178 SQY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP--FADFITSTTHKSLRGPRG---GFILMK---- 242 (1342)
Q Consensus 178 ~~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~--~~Divv~S~sK~l~gp~G---G~iv~~---- 242 (1342)
++. .++++|+++|++||++||+|++|....+....+.+. ++ ...++++||||.| +.+| ||++++
T Consensus 182 tG~~~s~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRiG~~i~~~~~~ 260 (409)
T PLN02656 182 CGNVYSYQHLKKIAETAEKLKILVIADEVYGHLAFGSNPFVPMGVFGSIVPVLTLGSLSKRW-IVPGWRLGWFVTTDPSG 260 (409)
T ss_pred CCCCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCcccHHHhcccCcEEEEcccchhc-cCcceeEEEEEEeCccc
Confidence 322 379999999999999999999998654432222211 11 1247789999998 6666 999984
Q ss_pred ----chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEE
Q psy13354 243 ----KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIIL 317 (1342)
Q Consensus 243 ----~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~ 317 (1342)
+++++.+...... .++++.+.+.++..++.+....++++.++.+.++++.+.+.|.+.+ +.....+.+++++|
T Consensus 261 ~~~~~~~~~~~~~~~~~--~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~~~~~~~~~~p~gg~~~w 338 (409)
T PLN02656 261 SFRDPKIVERIKKYFDI--LGGPATFIQAAVPTILEQTDESFFKKTINILKQSSDICCDRIKEIPCITCPHKPEGSMAVM 338 (409)
T ss_pred ccccHHHHHHHHHHHhh--hcCCCHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCCcCCCeEEEEE
Confidence 4677777653222 2334455666665555432234677888899999999999998864 32223467789999
Q ss_pred EEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 318 VDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 318 i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++.. ..+.+++..+++++||.+.|+..++. .+++|++++.
T Consensus 339 ~~l~~~~~~~~~~~~~~~~~~l~~~gV~v~pg~~fg~------~~~iRi~~~~ 385 (409)
T PLN02656 339 VKLNLSLLEDISDDIDFCFKLAREESVIILPGTAVGL------KNWLRITFAA 385 (409)
T ss_pred EecchhhcCCCCCHHHHHHHHHHhCCEEEecchhcCC------CCeEEEEeCC
Confidence 998632 12346677888888999998866642 3579999996
No 157
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=99.85 E-value=1.2e-19 Score=217.65 Aligned_cols=317 Identities=15% Similarity=0.165 Sum_probs=212.8
Q ss_pred eeecCCCCcHH----HHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 32 LIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 32 l~a~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
.++++||++.. +++++.+++. +|+.++.+++. |+....+.+||+ .+++++|.+++++++ +|+.|+..++
T Consensus 2 ~f~s~dyLgl~~~~~~~~~~~~a~~-~~g~~~~~sr~~yg~~~~~~~LE~----~lA~~~g~e~al~~~-sG~~a~~~~i 75 (392)
T PLN03227 2 NFATHDFLSTSSSPTLRQTALESLS-HYGCGSCGPRGFYGTIDAHLELEQ----CMAEFLGTESAILYS-DGASTTSSTV 75 (392)
T ss_pred CCcCcCccCCCCCHHHHHHHHHHHH-HhCCCCcccccccCChHHHHHHHH----HHHHHhCCCcEEEec-CcHHHHHHHH
Confidence 46788888776 8889888885 67777776654 455566777777 999999999888888 9999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh----------cCCeEEEEcCCC
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK----------NKPKLIIAGASA 176 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~----------~~~~liv~~~s~ 176 (1342)
.++++|||+|++....|++ ....+...+. .++.+++++. -+++.+.+.+.+ ..+++|++.+..
T Consensus 76 ~~l~~~GD~Vl~~~~~h~s---~~~~~~l~~~--~~~~~~~~d~--~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~ 148 (392)
T PLN03227 76 AAFAKRGDLLVVDRGVNEA---LLVGVSLSRA--NVRWFRHNDM--KDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLY 148 (392)
T ss_pred HHhCCCCCEEEEeccccHH---HHHHHHHcCC--eEEEeCCCCH--HHHHHHHHHhhhhccccccccCCCcEEEEEcCCc
Confidence 9999999999977755544 3333344444 4444555411 123333334431 134566665443
Q ss_pred CC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCC--CCCCCCcEEEecCCccCCCCCeeEEEEechhHH
Q psy13354 177 YS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYP--NPVPFADFITSTTHKSLRGPRGGFILMKKKYKK 247 (1342)
Q Consensus 177 ~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~--~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~ 247 (1342)
++ ...|+++|.++|++||+++|+||+|++|..+.. .+. .+...+|++++|++|++ |+.||++++++++++
T Consensus 149 ~~~G~i~~l~~i~~l~~~~g~~livDe~~~~g~~g~~G~g~~~~~g~~p~~~~Div~~slsk~~-g~~gg~v~~~~~~~~ 227 (392)
T PLN03227 149 KNTGTLAPLKELVALKEEFHYRLILDESFSFGTLGKSGRGSLEHAGLKPMVHAEIVTFSLENAF-GSVGGMTVGSEEVVD 227 (392)
T ss_pred CCCCcccCHHHHHHHHHHcCCEEEEECcccccccCCCCCcHHHHcCCCCCCCceEEEeechhhh-hccCcEEecCHHHHH
Confidence 33 555899999999999999999999986655321 111 12334699999999998 899999999998888
Q ss_pred HHhhccCCccccCCcHHH-HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee---------CCCCCeEEE
Q psy13354 248 IINSAVFPGIQGGPLMHV-IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS---------GGTKSHIIL 317 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~-~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~---------~~~~~~~v~ 317 (1342)
.++.....+.++++.+|. ++++..++..... .++..+++.++.+++++.|.+.+++... ....++++.
T Consensus 228 ~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~--~~~~~~~l~~~~~~l~~~L~~~~~~~~~~~rg~~~~~~~~~~~i~~ 305 (392)
T PLN03227 228 HQRLSGSGYCFSASAPPFLAKADATATAGELA--GPQLLNRLHDSIANLYSTLTNSSHPYALKLRNRLVITSDPISPIIY 305 (392)
T ss_pred HHHHhCcCccccCCCCHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHhcCCccccccccccccCCCCCCCEEE
Confidence 776555555666654454 3334445544433 2456888999999999999875543211 123467788
Q ss_pred EEccCCCCC---------HHHHHHHHHHCCceeeecc------CCCCCCCcccccccccccccccccc
Q psy13354 318 VDLRNKKIT---------GKIAESILESANIICNKNS------IPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 318 i~~~~~~~~---------~~~~~~ll~~~GI~v~~~~------~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.+.+...+ .++...+++ +||++.+.. +|..| +..+|++++..+|.+
T Consensus 306 i~~~~~~~~~~~~~~~~~~~~~~~~~~-~Gi~~~~~~~~~~~~~~~~P-----~~~iR~~~~~~~t~e 367 (392)
T PLN03227 306 LRLSDQEATRRTDETLILDQIAHHSLS-EGVAVVSTGGHVKKFLQLVP-----PPCLRVVANASHTRE 367 (392)
T ss_pred EEeCCHHHhhhhhhhhHHHHHHHHHHH-CCCEEEecccccCCcCCCCC-----CceEEEEecCCCCHH
Confidence 887542211 245555555 599986532 23333 357999999988854
No 158
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=99.85 E-value=2.2e-19 Score=216.47 Aligned_cols=320 Identities=20% Similarity=0.202 Sum_probs=209.5
Q ss_pred cCceeeeecCC--C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 27 NNNIELIASEN--Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n--~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
++.|++..+++ + .+|.+.+++.+.+. .+..+.+...... +...+.+.+++.+++++|.+..++++ +|++++.
T Consensus 39 ~~~id~~~~~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~---g~~~~~~~l~~~la~~~~~~~~i~~~-~g~~~~~ 113 (385)
T PRK05958 39 RRMLNFASNDYLGLARHPRLIAAAQQAAR-RYGAGSGGSRLVT---GNSPAHEALEEELAEWFGAERALLFS-SGYAANL 113 (385)
T ss_pred ceEEEeeCCCcccCCCCHHHHHHHHHHHH-hcCCCCCCcCccc---CCcHHHHHHHHHHHHHhCCCcEEEEC-cHHHHHH
Confidence 35577776654 2 34669999988885 4432222222111 12244555666899999977666666 8899888
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC--c
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~--~ 179 (1342)
.++.+++++||+|++....|+.. .......|..+. .++. .|++.+++.+++. ++.++++++.+++ .
T Consensus 114 ~~l~~~~~~gd~V~~~~~~~~~~---~~~~~~~g~~~~--~~~~-----~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~ 183 (385)
T PRK05958 114 AVLTALAGKGDLIVSDKLNHASL---IDGARLSRARVR--RYPH-----NDVDALEALLAKWRAGRALIVTESVFSMDGD 183 (385)
T ss_pred HHHHHhCCCCCEEEEeCccCHHH---HHHHHhcCCceE--EeCC-----CCHHHHHHHHHhccCCCeEEEEEecccCCCC
Confidence 88888899999999877555443 334455566443 3343 2889999988764 3455655443333 3
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC-CCC--CCC-C-CcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE-YPN--PVP-F-ADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~-~~~--~l~-~-~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
..++++|+++|++||++||+||+|+.|.++. +. ... .+. . .+++++|+||++ |+.||++++++++++.+....
T Consensus 184 ~~~l~~i~~ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Gg~~~~~~~~~~~~~~~~ 262 (385)
T PRK05958 184 LAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKAL-GSSGAAVLGSETLIDYLINRA 262 (385)
T ss_pred cCCHHHHHHHHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhc-ccCCcEEEcCHHHHHHHHHhC
Confidence 5689999999999999999999998765532 11 111 111 2 347889999999 778899999998888776543
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
.++.+++..++...+++.+..+..... ....+++.++++++.+.|.+.|+++.. +.++++++.+++...+.++...+
T Consensus 263 ~~~~~~~~~~~~~~aa~~aal~~~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l 339 (385)
T PRK05958 263 RPFIFTTALPPAQAAAARAALRILRRE-PERRERLAALIARLRAGLRALGFQLMD--SQSAIQPLIVGDNERALALAAAL 339 (385)
T ss_pred ccceecCCCCHHHHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHcCCCcCC--CCCCEEEEEeCCHHHHHHHHHHH
Confidence 344443333444444443334433323 557788999999999999988877533 35667788876433344666666
Q ss_pred HHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++ +||.+.+...+..+.+ ..++|++++..++.
T Consensus 340 ~~-~gI~v~~~~~~~~~~~---~~~lRis~~~~~~~ 371 (385)
T PRK05958 340 QE-QGFWVGAIRPPTVPAG---TSRLRITLTAAHTE 371 (385)
T ss_pred HH-CCceEecccCCCCCCC---CceEEEEecCCCCH
Confidence 54 5999987554433221 35799999876553
No 159
>PRK07683 aminotransferase A; Validated
Probab=99.85 E-value=1.7e-19 Score=217.05 Aligned_cols=317 Identities=16% Similarity=0.133 Sum_probs=216.5
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
...+.+..+.+.+ ++.+.+++.+.+.+.. ..|+...+..++++++++++...+|.. + .+++++|+++
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~~~-------~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~ 100 (387)
T PRK07683 28 DNLISLTIGQPDFPTPSHVKEAAKRAITENY-------TSYTHNAGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASE 100 (387)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHH
Confidence 4457777775433 3457888777764221 123444556789998888887665642 3 4666658899
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
|+..++.+++.+||+|+++.+.++.+ .......|. ++++++.+ +++.+|++.+++.+.+ +++++++++++||
T Consensus 101 al~~~~~~l~~~gd~Vl~~~p~y~~~---~~~~~~~g~--~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~i~i~~p~NPt 174 (387)
T PRK07683 101 AIDIAFRTILEPGTEVILPAPIYPGY---EPIIRLCGA--KPVFIDTRSTGFRLTAEALENAITE-KTRCVVLPYPSNPT 174 (387)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCccch---HHHHHHcCC--EEEEeecCcccCCCCHHHHHHhcCc-CceEEEEeCCCCCC
Confidence 99999999999999999877655443 334455676 45555655 4567889999998865 4566666666666
Q ss_pred c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----CcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 179 Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----ADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 179 ~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
+ ..++++|+++|+++|++||+|++|....+.. ...+.... ..++++|+||.+ |.+| ||++++++++
T Consensus 175 G~~~s~~~~~~l~~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~s~SK~~-~~pGlRiG~i~~~~~l~ 252 (387)
T PRK07683 175 GVTLSKEELQDIADVLKDKNIFVLSDEIYSELVYEQ-PHTSIAHFPEMREKTIVINGLSKSH-SMTGWRIGFLFAPSYLA 252 (387)
T ss_pred CcCCCHHHHHHHHHHHHHcCeEEEEecccccceeCC-CcCChhhccCCcCCeEEEeeccccc-cCccceeEEEEcCHHHH
Confidence 2 2358999999999999999999998654432 21221111 258899999999 6567 9999999988
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-CC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-KI 325 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-~~ 325 (1342)
+.+.... .+...+++...+.++...+ .....+.+..++++.++++++.+.|.+.|+.+.. +.+++++|+.++.. ..
T Consensus 253 ~~~~~~~-~~~~~~~~~~~q~~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~ 329 (387)
T PRK07683 253 KHILKVH-QYNVTCASSISQYAALEAL-TAGKDDAKMMRHQYKKRRDYVYNRLISMGLDVEK-PTGAFYLFPSIGHFTMS 329 (387)
T ss_pred HHHHHHH-HhccCCCChHHHHHHHHHH-hCChHHHHHHHHHHHHHHHHHHHHHHHcCCcccC-CCeeEEEEEecccCCCC
Confidence 8887642 3333333344444444333 3333356677888899999999999988876533 45677888877653 23
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 330 ~~~~~~~ll~~~gI~v~pg~~f~~~~----~~~~Ri~~~~ 365 (387)
T PRK07683 330 SFDFALDLVEEAGLAVVPGSAFSEYG----EGYVRLSYAY 365 (387)
T ss_pred HHHHHHHHHHhCCEEEcCchhhCCCC----CCeEEEEecC
Confidence 45677788888899999876554322 4679999985
No 160
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=99.85 E-value=3e-19 Score=216.55 Aligned_cols=326 Identities=14% Similarity=0.100 Sum_probs=220.0
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHHHHHHHH--
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQANQAVFFS-- 108 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~~~al~a-- 108 (1342)
.++..+.++.+++++.+.+...+ +++.+..+.......+..+.+++.+++++|. + +.+++++|+|+++..++.+
T Consensus 29 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~ 106 (406)
T PRK09295 29 SAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWG 106 (406)
T ss_pred CcccccCCHHHHHHHHHHHHhcC--CCCCCcccHHHHHHHHHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 34567788889999888775332 2222222222233345555688899999997 3 5677776889999988876
Q ss_pred --ccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 109 --VLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 109 --l~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
++++||+|++...+|++.+..+. .....|+.+..+ +.+.++.+|++++++++++ ++++++++.++++ ...|+
T Consensus 107 ~~~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~v~~v--~~~~~~~~d~~~l~~~i~~-~t~lv~l~~~~n~tG~~~~~ 183 (406)
T PRK09295 107 NSNVRAGDNIIISEMEHHANIVPWQMLCARVGAELRVI--PLNPDGTLQLETLPALFDE-RTRLLAITHVSNVLGTENPL 183 (406)
T ss_pred hhcCCCcCEEEECcchhhHHHHHHHHHHHHcCcEEEEE--ecCCCCCCCHHHHHHhcCC-CcEEEEEecchhcccccCCH
Confidence 46899999988877765443333 345567755444 5566788999999999876 4566665554444 45599
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++|.++|+++|+++++|++|+.|...-.. . ...+|++++|+||.+ ||.| |+++.++++.+.+....
T Consensus 184 ~~i~~~~~~~~~~vivD~a~~~g~~~~~~--~-~~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~ 259 (406)
T PRK09295 184 AEMIALAHQHGAKVLVDGAQAVMHHPVDV--Q-ALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGGSMIATV 259 (406)
T ss_pred HHHHHHHHHcCCEEEEEcccccCccccCc--h-hcCCCEEEeehhhcc-CCCCcEEEEEchHhHhhCCCcccCCceeeee
Confidence 99999999999999999999877541110 0 113699999999976 8999 99999998766553210
Q ss_pred ------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEc
Q psy13354 254 ------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 254 ------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~ 320 (1342)
..+..|+++.+...++..++....+.+.+.+.++..+.++++.+.|.+. |+++..+.....++.+.+
T Consensus 260 ~~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~iv~~~~ 339 (406)
T PRK09295 260 SLTEGTTWAKAPWRFEAGTPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNL 339 (406)
T ss_pred ecCCccccCCchhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCCceEEEEEE
Confidence 1123356777777787777766655577888889999999999999886 677765322345666666
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccc-ccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPE-KPY-FTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~-~~~~lRi~~~~~~t~ 369 (1342)
+.. +.+.+...|+++||.++.+..-..+. ..+ .++.+|+|++.++|.
T Consensus 340 ~~~--~~~~~~~~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~ 388 (406)
T PRK09295 340 GKH--HAYDVGSFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTH 388 (406)
T ss_pred CCc--CHHHHHHHHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCH
Confidence 542 33444556678899997643111000 000 024699999998774
No 161
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=99.85 E-value=3.6e-19 Score=212.87 Aligned_cols=301 Identities=16% Similarity=0.185 Sum_probs=195.6
Q ss_pred HHHHHhHHHHhccccCCCCCCccCCcc--hHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEee
Q psy13354 43 VMEAQGTLLTNKYAEGYPGKRYYGGCK--FIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120 (1342)
Q Consensus 43 v~eal~~~l~~~~~~g~~~~~~~~~~~--~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~ 120 (1342)
+.++..+++. +|+.++.++++.++.. +.......+++.+++++|.+.+++++ ||++++..++.+++++||.|++..
T Consensus 20 ~~~~~~~a~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~e~lA~~~g~~~~~i~~-g~~~a~~~~~~~l~~~gd~Vl~~~ 97 (370)
T TIGR02539 20 LTEAARKALV-EFGDGYSVCDFCGGRLDQITKPPIHDFLEDLAEFLGMDEARVTH-GAREGKFAVMHALCKEGDWVVLDG 97 (370)
T ss_pred CcHHHHHHHH-HHhhccccccccccccccccchHHHHHHHHHHHHhCCCceEEEC-ChHHHHHHHHHHhhCCCCEEEECC
Confidence 5566666664 5666666665543321 12222333455799999999887776 999999999999999999999755
Q ss_pred ccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh------cCCeEEEEcCCCCC--cccCHHHHHHHHHH
Q psy13354 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK------NKPKLIIAGASAYS--QYIDFERFYHIAKN 192 (1342)
Q Consensus 121 ~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~------~~~~liv~~~s~~~--~~~~l~~I~~la~~ 192 (1342)
. .|++....+...|..+..++...+.++.+|++++++.+++ ..+++|+++.++++ ...++++|+++|++
T Consensus 98 ~---~h~s~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~l~~i~~la~~ 174 (370)
T TIGR02539 98 L---AHYTSYVAAERAGLNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPDAGKVAKVCRE 174 (370)
T ss_pred c---ccHHHHHHHHHcCCEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccCHHHHHHHHHH
Confidence 3 3444444556777755555432224588999999998864 24567776655544 55599999999999
Q ss_pred cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe--eEEEEechhHHHHhhccCCccccC-------CcH
Q psy13354 193 INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG--GFILMKKKYKKIINSAVFPGIQGG-------PLM 263 (1342)
Q Consensus 193 ~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G--G~iv~~~~l~~~l~~~~~~~~~~~-------~~~ 263 (1342)
+|+++|+|++|+.|...... .....|++++|+||++ ++.| ||+++++++++.+.....++.++. +..
T Consensus 175 ~~~~livDea~~~g~~~~~~---~~~~~di~v~s~sK~~-~~~g~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~ 250 (370)
T TIGR02539 175 KGVPLLLNCAYTVGRMPVSA---KEIGADFIVGSGHKSM-AASGPCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRG 250 (370)
T ss_pred cCCeEEEECccccCCcCCCH---HHcCCCEEEeeCcccc-cCCCCEEEEEECHHHHhhhcccccCCccceeeeecccccc
Confidence 99999999999886432110 0113689999999999 4445 999999999998887655544322 111
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccCCC-------CCHHHHHHHHH
Q psy13354 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRNKK-------ITGKIAESILE 335 (1342)
Q Consensus 264 ~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~~~-------~~~~~~~~ll~ 335 (1342)
....++..++... .+.++.. .+..++++++++.|.+.|+++.. .+..+++++++++... .....+...|.
T Consensus 251 ~~~~~~~~al~~~-~~~l~~~-~~~~~~~~~l~~~L~~~g~~~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~ 328 (370)
T TIGR02539 251 APIVTMMASFPHV-VERVKRW-DEEVKKTRWFVAELEDIGFIQLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELK 328 (370)
T ss_pred cHHHHHHHHHHHH-HHHHHHH-HHHHHHHHHHHHHHHhCCcEEEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHH
Confidence 2333333333322 2233333 33345567899999999998742 3566888888875321 11233455555
Q ss_pred HCCce-eeeccCCCCCCCcccccccccccc
Q psy13354 336 SANII-CNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 336 ~~GI~-v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++||. +. |+. .+++|+++.
T Consensus 329 e~GI~~ir----~~~------~~~iRis~~ 348 (370)
T TIGR02539 329 KRGIHGIR----SGQ------TKYFKLSVY 348 (370)
T ss_pred hCCCcccc----CCc------ceEEEEEec
Confidence 56997 33 211 247999974
No 162
>PRK09148 aminotransferase; Validated
Probab=99.85 E-value=2.9e-19 Score=216.27 Aligned_cols=318 Identities=12% Similarity=0.098 Sum_probs=209.6
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
...+.+..+++.+ ++.+.+++.+.+.+. ....|....+..++++++++++.+.+|.+ + .+++++|+++
T Consensus 30 ~~~i~l~~~~p~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~ 103 (405)
T PRK09148 30 ADIIDLGMGNPDLPTPQHIVDKLCETAQDP------RTHRYSASKGIPGLRRAQAAYYARRFGVKLNPDTQVVATLGSKE 103 (405)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHcCc------ccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHH
Confidence 3457777776543 344777766655311 11224445566788998888887766743 3 4666658888
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh--cCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK--NKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~~~s~~~ 178 (1342)
|+..++.+++.+||+|+++.+.++.+. ......|.. +++++.+.++. +++++++.+.. .+++++++++|+||
T Consensus 104 al~~~~~~l~~~gd~Vl~~~P~y~~~~---~~~~~~g~~--v~~v~~~~~~~-~~~~l~~~~~~~~~~~~~v~l~~P~NP 177 (405)
T PRK09148 104 GFANMAQAITAPGDVILCPNPSYPIHA---FGFIMAGGV--IRSVPAEPDEE-FFPALERAVRHSIPKPIALIVNYPSNP 177 (405)
T ss_pred HHHHHHHHhcCCCCEEEEcCCCCcccH---HHHHhcCCE--EEEEeCCCCCC-CccCHHHHHhhccccceEEEEeCCCCC
Confidence 999999999999999998876665543 333556764 44445442221 23344444432 24566677666666
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
....+++|+++|++||++||+||+|....+......+... ...++++||||.+ |.+| ||+++++++
T Consensus 178 tG~~~s~~~l~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~s~~~~~~~~~~~i~~~SfSK~~-~~pGlR~G~~v~~~~~ 256 (405)
T PRK09148 178 TAYVADLDFYKDVVAFAKKHDIIILSDLAYSEIYFDGNPPPSVLQVPGAKDVTVEFTSMSKTF-SMAGWRMGFAVGNERL 256 (405)
T ss_pred CCcCCCHHHHHHHHHHHHHcCeEEEEeccchhhhcCCCCCCChhhCCCccCcEEEEecccccc-CCcchheeeeeCCHHH
Confidence 2224688999999999999999999865443221221111 1236689999999 7667 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
++.+......... ++..+.+.++...+.. ...+++..++.+.++++++.+.|.+.|+.+. .+.+++++|+.++...
T Consensus 257 i~~l~~~~~~~~~-~~~~~~q~~~~~~L~~-~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~-~p~~g~f~~~~l~~~~~ 333 (405)
T PRK09148 257 IAALTRVKSYLDY-GAFTPIQVAATAALNG-PQDCIAEMRELYKKRRDVLVESFGRAGWDIP-PPAASMFAWAPIPEAFR 333 (405)
T ss_pred HHHHHHHHHHhcc-CCChHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCccC-CCCeeEEEEEECCCccC
Confidence 8888764322222 2334555555444432 2346778888999999999999999887643 3567889999987532
Q ss_pred --CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 325 --ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 325 --~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+.+++..++++.||.+.++..++... .+++|++++
T Consensus 334 ~~~~~~~~~~ll~~~gV~v~pg~~f~~~~----~~~~Ri~~~ 371 (405)
T PRK09148 334 HLGSLEFSKLLVEKADVAVAPGVGFGEHG----DGYVRIALV 371 (405)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCeEEEEec
Confidence 235777888877899999886654322 357999886
No 163
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=99.85 E-value=9e-19 Score=209.90 Aligned_cols=327 Identities=21% Similarity=0.208 Sum_probs=225.2
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHHHHHc-
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAVFFSV- 109 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~al~al- 109 (1342)
.++..++|+.|++++.+.+.+.+ +++.+..+.......++.+++++.+++++|++. .++++.|+|.|+..++.++
T Consensus 5 ~~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~ 82 (371)
T PF00266_consen 5 NAGTGPMPKSVLEAISDYLRNFY--ANPHSGVSHRSREFAEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLL 82 (371)
T ss_dssp TSSS-B-BHHHHHHHHHHHHHSG--SSTSTSSSTTSHHHHHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHH
T ss_pred CCCccCCCHHHHHHHHHHHHHhh--hcCcccccchhhhhhHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccc
Confidence 46678899999999998886554 333223333344455666779999999999885 5666779999999999999
Q ss_pred --cCCCCEEEEeeccCCccchhhHHh-hhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHGMML-NMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~~~~-~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
+.+||+|++....+++....+... ...|..+..++. +.++.+|++++++.+++.+..+++.+..+.+ ...|+++
T Consensus 83 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~v~~i~~--~~~~~~~~~~~~~~l~~~~~lv~~~~~~~~tG~~~pi~~ 160 (371)
T PF00266_consen 83 NPLKPGDEVLVTSNEHPSNRYPWEEIAKRKGAEVRVIPA--DPGGSLDLEDLEEALNPDTRLVSISHVENSTGVRNPIEE 160 (371)
T ss_dssp HHGTTTCEEEEEESSHHHHHHHHHHHHHHTTEEEEEEEE--GTTSSCSHHHHHHHHHTTESEEEEESBETTTTBBSSHHH
T ss_pred cccccccccccccccccccccccccccccchhhhccccc--cccchhhhhhhhhhhccccceEEeecccccccEEeeece
Confidence 799999999888777665444443 467876665544 4567789999999998544444444444444 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCcc-------
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGI------- 257 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~------- 257 (1342)
|.++|+++|+++++|.+|++|...-.. . .-.+|++++|.|| |+||.| |+++.+++..+.+++....+.
T Consensus 161 I~~~~~~~~~~~~vD~~~~~g~~~id~--~-~~~~D~~~~s~~K-l~gp~G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~ 236 (371)
T PF00266_consen 161 IAKLAHEYGALLVVDAAQSAGCVPIDL--D-ELGADFLVFSSHK-LGGPPGLGFLYVRPEAIERLRPAKPGGGYLDFPSL 236 (371)
T ss_dssp HHHHHHHTTSEEEEE-TTTTTTSS--T--T-TTTESEEEEESTS-TTSSSTEEEEEEEHHHHHHHHTSSSSSSTTTHHHH
T ss_pred ehhhhhccCCceeEechhccccccccc--c-ccccceeeecccc-cCCCCchhhheehhhhhhccccccccccccccccc
Confidence 999999999999999999988762111 0 1137999999999 779999 999999988888854333222
Q ss_pred -------------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc-EEeeC---CCCCeEEEEEc
Q psy13354 258 -------------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI-RIVSG---GTKSHIILVDL 320 (1342)
Q Consensus 258 -------------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~-~~~~~---~~~~~~v~i~~ 320 (1342)
.|+++.+...++..++......+.+.+.++..++++++.+.|.+.+. .+..+ .....++.+.+
T Consensus 237 ~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~ 316 (371)
T PF00266_consen 237 QEYGLADDARRFEGGTPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGIEVLGPDDEPRRPSIVSFNL 316 (371)
T ss_dssp HHHCHHSTTTGSSSSS--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTEEESSSSCGGBGTTEEEEEE
T ss_pred hhcccccccccccccceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCceeEeeecccccccceEEEee
Confidence 24677777777777777765567888889999999999999999754 44321 22245666666
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCC--Cccccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPE--KPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~--~~~~~~~lRi~~~~~~t~ 369 (1342)
+. .+.+.+...|++.||.+..+..-..+. ..-..+.+|+|++.++|.
T Consensus 317 ~~--~~~~~~~~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~ 365 (371)
T PF00266_consen 317 PG--SDADDVVKYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTE 365 (371)
T ss_dssp TT--SSHHHHHHHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSH
T ss_pred cC--CCHHHHHHHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCH
Confidence 43 244555555555599999732111000 000025799999998874
No 164
>PTZ00377 alanine aminotransferase; Provisional
Probab=99.85 E-value=3.2e-19 Score=220.30 Aligned_cols=312 Identities=12% Similarity=0.067 Sum_probs=205.2
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHcc-CCCCE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVL-NPGDT 115 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~-~pGD~ 115 (1342)
|..+++++.+.+.. .. .....|+...+..++++++++++.+..|.+ +.+++++|+++|+..++.+++ +|||+
T Consensus 90 P~~~~~~~~~~~~~-~~---~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~~gD~ 165 (481)
T PTZ00377 90 PADVVARAKEYLNA-IG---GGTGAYTDSAGYPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLIGDPSDG 165 (481)
T ss_pred CHHHHHHHHHHHHh-CC---CcccCcCcccCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhccCCCCE
Confidence 33566666554432 11 122346667778899998888888766643 455566588889999999998 79999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC-c----ccCHHH
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS-Q----YIDFER 185 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~-~----~~~l~~ 185 (1342)
|+++.+.++ .+...+...|..+..+++..+++|.+|++.+++.+++. +++++++++++|| + ...+++
T Consensus 166 Vlv~~P~y~---~y~~~~~~~g~~~v~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~s~e~~~~ 242 (481)
T PTZ00377 166 VMIPIPQYP---LYSAAITLLGGKQVPYYLDEEKGWSLDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVLTRDVMEE 242 (481)
T ss_pred EEECCCCch---hHHHHHHHcCCEEEEEEeccccCCCCCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCCCHHHHHH
Confidence 997775554 44555566777444443333345789999999988752 4565555565666 2 225899
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcC-CCCCC------CC-C-----CcEEEecCCccCCCCCe---eEEEE---echhH
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAG-EYPNP------VP-F-----ADFITSTTHKSLRGPRG---GFILM---KKKYK 246 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~------l~-~-----~Divv~S~sK~l~gp~G---G~iv~---~~~l~ 246 (1342)
|+++|++||++||+||+|....+..+ .+.+. +. . .-++++||||.+.+++| ||+++ +++++
T Consensus 243 i~~~a~~~~~~iI~De~Y~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~GlRiG~~~~~~~p~~li 322 (481)
T PTZ00377 243 IIKFCYEKGIVLMADEVYQENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGRRGGYFELTNIPPEVR 322 (481)
T ss_pred HHHHHHHCCCEEEEehhhHhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcCceEEEEEeCCCHHHH
Confidence 99999999999999999976544222 22211 11 0 13678999998545556 99986 78888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHh---------ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEE
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEV---------LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHII 316 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~---------l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v 316 (1342)
+.+...... ..+++.+.+.++..++... ...+.....+.+.++++.+.+.|.+. |+.+. .+.+++++
T Consensus 323 ~~l~~~~~~--~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~g~~~~-~p~gg~fl 399 (481)
T PTZ00377 323 EQIYKLASI--NLCSNVVGQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNKIEGVSCQ-PVEGAMYA 399 (481)
T ss_pred HHHHHHhhe--ecCCChHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEee-cCCeeEEE
Confidence 888764322 2234455666665554210 11123333445788899999999886 77764 35678899
Q ss_pred EEEccCC------------CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 317 LVDLRNK------------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 317 ~i~~~~~------------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
|++++-+ ..+..++..+++++||.+.|+..++...+ .+++|++++
T Consensus 400 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~---~~~~Rls~~ 456 (481)
T PTZ00377 400 FPRIELPEKAIQEAKERGLAPDVLYCLELLESTGIVVVPGSGFGQKPG---TYHFRITIL 456 (481)
T ss_pred EeeccCchhhHHHHHhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCC---CCEEEEEEC
Confidence 9776421 11334667888888999999876654222 357999998
No 165
>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]
Probab=99.85 E-value=6.4e-19 Score=202.99 Aligned_cols=312 Identities=17% Similarity=0.188 Sum_probs=233.8
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al 106 (1342)
.+.|.+++..+++.|+++|......+. .+....+.+.+.+.+...++++ ++++++++||.|+++++
T Consensus 6 ~~Ll~PGP~~v~~~V~~am~~~~~~h~------------s~~F~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav 73 (383)
T COG0075 6 RLLLTPGPVPVPPRVLLAMARPMVGHR------------SPDFVGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAV 73 (383)
T ss_pred ceeeeCCCCCCCHHHHHHhcCCCCCCC------------CHHHHHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHH
Confidence 466899999999999999887664322 1223356666778999999988 78888889999999999
Q ss_pred HHccCCCCEEEEeeccCCccch--hhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEE-EEc-CCCCCccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLT--HGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLI-IAG-ASAYSQYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s--~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~li-v~~-~s~~~~~~ 181 (1342)
.+++.|||+|++.. .+.|+ ....++..|..+..+..+ +.-.+|++++++.++++. .+++ ++| .+..+...
T Consensus 74 ~sl~~pgdkVLv~~---nG~FG~R~~~ia~~~g~~v~~~~~~--wg~~v~p~~v~~~L~~~~~~~~V~~vH~ETSTGvln 148 (383)
T COG0075 74 ASLVEPGDKVLVVV---NGKFGERFAEIAERYGAEVVVLEVE--WGEAVDPEEVEEALDKDPDIKAVAVVHNETSTGVLN 148 (383)
T ss_pred HhccCCCCeEEEEe---CChHHHHHHHHHHHhCCceEEEeCC--CCCCCCHHHHHHHHhcCCCccEEEEEeccCcccccC
Confidence 99999999999765 33333 356678888866666544 445679999999998543 3333 333 24444566
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC-----
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP----- 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~----- 255 (1342)
|+++|+++|++||+++|||++.++|...-....+ .+|+++++.+|++++|+| |++..+++..+.+.....+
T Consensus 149 pl~~I~~~~k~~g~l~iVDaVsS~Gg~~~~vd~w---giDv~itgSQK~l~~PPGla~v~~S~~a~e~~~~~~~~~~ylD 225 (383)
T COG0075 149 PLKEIAKAAKEHGALLIVDAVSSLGGEPLKVDEW---GIDVAITGSQKALGAPPGLAFVAVSERALEAIEERKHPSFYLD 225 (383)
T ss_pred cHHHHHHHHHHcCCEEEEEecccCCCcccchhhc---CccEEEecCchhccCCCccceeEECHHHHHHHhcCCCCceeec
Confidence 9999999999999999999998887662111000 379999999999999999 9999988666555433222
Q ss_pred ------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC-CCC-eEEEEEcc
Q psy13354 256 ------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG-TKS-HIILVDLR 321 (1342)
Q Consensus 256 ------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~-~~~-~~v~i~~~ 321 (1342)
....||+.+...|+..++..+.+++++.+.++++++++.+++.++.+|++++..+ ..+ .+..+.++
T Consensus 226 L~~~~~~~~~~~~~p~Tppv~~i~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~~~~~~~~s~tvta~~~P 305 (383)
T COG0075 226 LKKWLKYMEKKGSTPYTPPVNLIYALREALDLILEEGLEARIARHRRLAEALRAGLEALGLELFADPERRSPTVTAIKVP 305 (383)
T ss_pred HHHHHHHHhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCccccCcccCCCceEEEECC
Confidence 2234677888899999999999989999999999999999999999999987722 122 34455666
Q ss_pred CCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 322 NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 322 ~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
....+.+....+++++||.+.++..+.... .+||+....
T Consensus 306 ~g~~~~~~~~~~~~~~g~~i~gg~~~l~gk------ifRIGhMG~ 344 (383)
T COG0075 306 EGVDDKKVRRALLKEYGVEIAGGQGPLKGK------IFRIGHMGN 344 (383)
T ss_pred CCCCcHHHHHHHHHhCCEEecccccccCcc------EEEEecCcc
Confidence 655555666688888899999775555433 599998774
No 166
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=99.85 E-value=5.5e-19 Score=211.16 Aligned_cols=311 Identities=16% Similarity=0.109 Sum_probs=209.4
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~~a 105 (1342)
.+.+.+++..+.+.+.+++..... . + .+...++.+.+++.+++++|++. .+++++|||+|+..+
T Consensus 4 ~~l~~pgp~~~~~~v~~~~~~~~~-~----------~--~~~~~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~ 70 (363)
T TIGR02326 4 YLLLTPGPLTTSRTVKEAMLFDWC-T----------W--DSDYNIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAV 70 (363)
T ss_pred eeEecCCCCCCCHHHHHHhCCCCC-C----------C--ChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHH
Confidence 345788888888888877554331 1 1 12344556668889999999863 577777999999999
Q ss_pred HHHccCCCCEEEEeec-cCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEEE-EcCCCCC-ccc
Q psy13354 106 FFSVLNPGDTIMGMSL-QEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLII-AGASAYS-QYI 181 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~-~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~liv-~~~s~~~-~~~ 181 (1342)
+.+++.+||.+++... .++.. ........|..+..+ +.++++.+|++++++++++++ .+++. .+..+.+ ...
T Consensus 71 ~~~l~~~~~~vlv~~~~~~~~~--~~~~a~~~g~~~~~v--~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~ 146 (363)
T TIGR02326 71 IGSAVPKDGKLLVVINGAYGAR--IVQIAEYLGIPHHVV--DTGEVEPPDVVEVEAILAADPAITHIALVHCETTTGILN 146 (363)
T ss_pred HHhcCCCCCeEEEEeCChhhHH--HHHHHHHcCCceEEE--eCCCCCCCCHHHHHHHHhhCCCccEEEEEeecCCccccC
Confidence 9999889988776442 22211 123345667754444 556677889999999987643 34443 3333333 555
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC----
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP---- 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~---- 255 (1342)
|+++|.++|++||+++++|++|++|...- .... .+|++++|+|||++||.| |+++.+++.++.+.....+
T Consensus 147 ~i~~I~~l~~~~g~~livD~~~~~g~~~~----~~~~~~~D~~~~s~~K~l~~p~G~G~l~~~~~~~~~~~~~~~~~~~~ 222 (363)
T TIGR02326 147 PIEAVAKLAHRHGKVTIVDAMSSFGGIPI----DIAELHIDYLISSANKCIQGVPGFGFVIARQAELAACKGNARSLSLD 222 (363)
T ss_pred cHHHHHHHHHHcCCEEEEEccccccCccc----chhhcCccEEEecCccccccCCcceEEEECHHHHHHhhcCCCceeec
Confidence 99999999999999999999998765421 1111 369999999999988999 9999998776655321111
Q ss_pred --------------ccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC-CCC-eEEEE
Q psy13354 256 --------------GIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGG-TKS-HIILV 318 (1342)
Q Consensus 256 --------------~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~-~~~-~~v~i 318 (1342)
..+ +++.+...++..++.....+ ++++..+++.++++++.+.|.+.|+.+..++ ... .+.++
T Consensus 223 ~~~~~~~~~~~~~~~~f-t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 301 (363)
T TIGR02326 223 LYDQWRCMEDNHGKWRF-TSPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEPLLDDEIQSPIITSF 301 (363)
T ss_pred HHHHHHHHhccCCCCCC-CCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCcccCCceEEEE
Confidence 111 34566677777666665443 4777889999999999999999998875432 123 34567
Q ss_pred EccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 319 DLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 319 ~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+++. ..+...+...|+++||.+.++..+. ..++|+++...++
T Consensus 302 ~~~~~~~~~~~~v~~~L~~~gi~v~~g~~~~-------~~~iRi~~~~~~~ 345 (363)
T TIGR02326 302 YSPEDPDYRFADFYQRLKEQGFVIYPGKVSQ-------VDCFRIGNIGEVD 345 (363)
T ss_pred ECCCCCCCCHHHHHHHHHHCCEEEECCcCCC-------CCEEEEecCCCCC
Confidence 76643 1233334444556699998654321 2469999766554
No 167
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=99.85 E-value=1.4e-19 Score=222.32 Aligned_cols=325 Identities=14% Similarity=0.105 Sum_probs=213.5
Q ss_pred CceeeeecCCCCcHHH-HHHHhHHHHh----c-cccCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecC
Q psy13354 28 NNIELIASENYTSLAV-MEAQGTLLTN----K-YAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPH 96 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v-~eal~~~l~~----~-~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~ 96 (1342)
..|.|..+||.+.... .+.+.+.... . ....++.-..|+...+..++++++++++.+.+| .+ +.+++++
T Consensus 47 g~i~l~~aEN~l~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~ 126 (496)
T PLN02376 47 GIIQMGLAENQLCLDLIKDWVKENPEASICTLEGIHQFSDIANFQDYHGLKKFRQAIAHFMGKARGGKVTFDPERVVMSG 126 (496)
T ss_pred ceEEeecchhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCCCcHHHHHHHHHHHHHHhCCCCcCChhhEEEcc
Confidence 3588999999884442 3333332211 0 111233334466667778999999999888766 33 4556665
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecC--CCCCCCCHHHHHHHHHh-----cCCe
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGL--NKKEKIDYKKVEYLAKK-----NKPK 168 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~-----~~~~ 168 (1342)
|+++|+..++.+++.|||.|+++.+.|+++. ..+. ..|. +++++++ ++++.+|++.++.++.. .+++
T Consensus 127 Ga~~al~~l~~~l~~pGD~Vlv~~P~Y~~~~---~~~~~~~G~--~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k 201 (496)
T PLN02376 127 GATGANETIMFCLADPGDVFLIPSPYYAAFD---RDLRWRTGV--EIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVK 201 (496)
T ss_pred chHHHHHHHHHHhCCCCCEEEECCCCccchH---HHHHhhCCC--EEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCee
Confidence 8888999999999999999998886666553 2233 3566 5555555 35678999999865431 3567
Q ss_pred EEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC------C----CCc--EEEecCCccC
Q psy13354 169 LIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV------P----FAD--FITSTTHKSL 231 (1342)
Q Consensus 169 liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l------~----~~D--ivv~S~sK~l 231 (1342)
++++++|+|| ....+++|+++|++||++||+||+|....+....+.+.. + ..+ +++.||||.|
T Consensus 202 ~l~l~nP~NPTG~~~s~e~l~~L~~~a~~~~i~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~ 281 (496)
T PLN02376 202 GLILTNPSNPLGTMLDKDTLTNLVRFVTRKNIHLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDM 281 (496)
T ss_pred EEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccC
Confidence 6777777777 333688899999999999999999986555332222211 1 012 4578999999
Q ss_pred CCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 232 RGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 232 ~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
|.+| ||++++ +.+.+.+.... .+ +......+.+++..+.+. ....+.+.++++.++++.+.+.|.+.|+.
T Consensus 282 -glpGlRvG~li~~~~~l~~~~~~~~-~~--~~vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~gi~ 357 (496)
T PLN02376 282 -GLPGFRVGIVYSFNDSVVSCARKMS-SF--GLVSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKADIA 357 (496)
T ss_pred -CCCcceEEEEEECCHHHHHHHHHHh-hc--CCCCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCc
Confidence 6666 999995 45555544322 22 222344455444443221 12234455778888899999999988887
Q ss_pred EeeCCCCCeEEEEEccCCCC-------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNKKI-------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~~~-------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.. +.+++++|++++.... ..+++..++++.||.+.|+..++... ++++|++++..
T Consensus 358 ~~~-~~aG~flwi~l~~~~~~~~~~~~e~~l~~~ll~~~gV~v~pGs~F~~~~----~g~~Ri~fa~~ 420 (496)
T PLN02376 358 CLT-SNAGLFAWMDLRHLLRDRNSFESEIELWHIIIDKVKLNVSPGSSFRCTE----PGWFRICFANM 420 (496)
T ss_pred ccC-CCceEEEEEEchhhhccCCchhHHHHHHHHHHHcCCEEEeCccccCCCC----CCEEEEEeeCC
Confidence 644 5677999999975321 14677778888899999987664432 46799999863
No 168
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=99.84 E-value=5.8e-19 Score=207.68 Aligned_cols=292 Identities=18% Similarity=0.207 Sum_probs=200.0
Q ss_pred cCCCCcHH----HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--CCceEecCCHHHHHHHHHHH
Q psy13354 35 SENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--EAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 35 ~~n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~~~vi~~~sGs~A~~~al~a 108 (1342)
-+||++.+ ++++..+++. .|. +.. ++.+++++.+++++|. +.+++++ ||++|+..++.+
T Consensus 26 ~~~ylgl~~~~~~~~~~~~~~~-~~~---------g~~----~~~~~Le~~lA~~~g~~~e~ilv~~-gg~~a~~~~~~a 90 (346)
T TIGR03576 26 LYDLTGLAGGFKIDEEDLELLE-TYV---------GPA----IFEEKVQELGREHLGGPEEKILVFN-RTSSAILATILA 90 (346)
T ss_pred ccccccCCCChhHHHHHHHHHH-Hhc---------CCH----HHHHHHHHHHHHHcCCCcceEEEEC-CHHHHHHHHHHH
Confidence 36777766 7888777774 442 122 4555555699999998 4666666 999999999999
Q ss_pred ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC----cccCHH
Q psy13354 109 VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS----QYIDFE 184 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~----~~~~l~ 184 (1342)
+++|||+|+++.+..+.|.+....+...|.. ++. .+ ++++++. . .++++|++++++.. ...+++
T Consensus 91 l~~~gd~Vli~~~d~p~~~s~~~~~~l~ga~--~~~--~~-----~l~~l~~-~--~~~~lIiitg~s~~G~v~~~~~L~ 158 (346)
T TIGR03576 91 LEPPGRKVVHYLPEKPAHPSIPRSCKLAGAE--YFE--SD-----ELSELKK-I--DGTSLVVITGSTMDLKVVSEEDLK 158 (346)
T ss_pred hCCCCCEEEECCCCCCCchhHHHHHHHcCCE--Eec--cC-----CHHHHhh-C--cCceEEEEECCCCCCcccCHHHHH
Confidence 9999999997555456676666666777763 332 12 4555432 1 23566665544333 225899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcH
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLM 263 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~ 263 (1342)
+|+++|++||++|++||||+.|..+. +.........|++++|+||+++|+.|||+++++++++.+.....++.++ .+.
T Consensus 159 ~i~~la~~~~~~livDEAy~~~~~~~~~~~~~~~~~~divv~s~SKalaG~r~G~v~~~~~li~~l~~~~~~~~~s-~~~ 237 (346)
T TIGR03576 159 RVIKQAKSKEAIVLVDDASGARVRRLYGQPPALDLGADLVVTSTDKLMDGPRGGLLAGRKELVDKIKSVGEQFGLE-AQA 237 (346)
T ss_pred HHHHHHHHcCCEEEEECCccccccccCCCCCHHHcCCcEEEeccchhccccceEEEEeCHHHHHHHHHhhcCcccC-ccH
Confidence 99999999999999999998765421 1111000125899999999998888999999999999999877777665 445
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 264 ~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+.++++..++.. .. .+..++.+.++++++.+.+.+ +.+. ++..+|+|++++.. .+.+++..+++++||.+.+
T Consensus 238 ~~~~aa~~aL~~-~~--~~~~~~~l~~r~~~~~~~l~~--~~~~--~~~~~f~~~~~~~~-~~~~~~~~ll~~~gV~v~~ 309 (346)
T TIGR03576 238 PLLAAVVRALEE-FE--LSRIRDAFKRKEEVYLRLFDK--LNVE--RTPTGFVIKGVEEE-KLIEIGLDLLRNYGIITIT 309 (346)
T ss_pred HHHHHHHHHHhh-cc--HHHHHHHHHHHHHHHHHHHHh--CCCC--cCCCeEEEEeCCCC-CHHHHHHHHHHhCCEEEeC
Confidence 566655555543 22 345567778888877777774 3332 23456899988642 2457888999999999998
Q ss_pred ccCCCCCCCccccccccccccccc
Q psy13354 344 NSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 344 ~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+..+. . .++++|++++...
T Consensus 310 ~~~f~--~---~~~~vRis~~~~~ 328 (346)
T TIGR03576 310 AVGMP--G---ASKTLRFDLAAKD 328 (346)
T ss_pred CcccC--C---CCCeEEEEEecCh
Confidence 64432 1 1457999988643
No 169
>PRK06107 aspartate aminotransferase; Provisional
Probab=99.84 E-value=3.3e-19 Score=215.77 Aligned_cols=316 Identities=12% Similarity=0.055 Sum_probs=216.3
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+++..+.+.++ +.+.+++.+.+.. . ...|....+..++++++++++++.+|.+ +.+++++|+++|
T Consensus 33 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~-~------~~~Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~a 105 (402)
T PRK06107 33 RSIVDLTVGEPDFDTPDHIKQAAVAAIER-G------ETKYTLVNGTPALRKAIIAKLERRNGLHYADNEITVGGGAKQA 105 (402)
T ss_pred CCEEEcCCCCCCCCCCHHHHHHHHHHHHc-C------CCCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence 34577877765544 5577777776642 1 1235555667789998999998888864 346666578899
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++++||+|+++++.++++ ...+...+. .++.++.+ +++.+|++.+++.+.+ +++++++++++||
T Consensus 106 l~~~~~~~~~~gd~vl~~~p~y~~y---~~~~~~~~~--~~~~v~~~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPt 179 (402)
T PRK06107 106 IFLALMATLEAGDEVIIPAPYWVSY---PDMVLANDG--TPVIVACPEEQGFKLTPEALEAAITP-RTRWLILNAPSNPT 179 (402)
T ss_pred HHHHHHHhcCCCCEEEEecCCCcCH---HHHHHHcCC--EEEEecCCcccCCCCCHHHHHhhcCc-CceEEEEECCCCCC
Confidence 9999999999999999887655544 333344454 34444443 4567899999998865 4455555455555
Q ss_pred c----ccCHHHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEEech
Q psy13354 179 Q----YIDFERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILMKKK 244 (1342)
Q Consensus 179 ~----~~~l~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~~~~ 244 (1342)
+ ..++++|+++|++| |++||+|++|....+.....++... ...++++|+||.| |++| ||++++++
T Consensus 180 G~~~s~~~~~~l~~~a~~~~~~~iI~De~y~~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~~~~~~ 258 (402)
T PRK06107 180 GAVYSRAELRALADVLLRHPHVLVLTDDIYDHIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTY-AMTGWRIGYAAGPAD 258 (402)
T ss_pred CcCcCHHHHHHHHHHHHHcCCeEEEEehhccccccCCCCCCCHHHhCcCccCCEEEEeccchhh-cCcccceeeeecCHH
Confidence 2 22578889999998 9999999999754332222221111 1247789999999 6666 99999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
+++.+........ .++..+.+.++..++.. ...+.+..++.+.++++.+.+.|++. |+.+. .+.+++++|++++..
T Consensus 259 ~~~~~~~~~~~~~-~~~s~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~g~~~~-~p~gg~~~~~~~~~~ 335 (402)
T PRK06107 259 LIAAINKLQSQSS-SCPSSISQAAAAAALNG-DQSFVTESVAVYKQRRDYALALLNAIPGLSCL-VPDGAFYLYVNCAGL 335 (402)
T ss_pred HHHHHHHHHHhcc-cCCChHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-CCCcceEEeeecccc
Confidence 9888876433222 23445555555544432 23467788888999999999999886 66653 356788999987421
Q ss_pred -----------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 324 -----------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 324 -----------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+.+++..+++++||.+.++..++. .+++|++++.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~Fg~------~~~iRis~~~ 382 (402)
T PRK06107 336 IGKTTPEGKVLETDQDVVLYLLDSAGVAVVQGTAYGL------SPYFRLSIAT 382 (402)
T ss_pred cccccccccCCCCHHHHHHHHHHhCCEEEeCccccCC------CCeEEEEeCC
Confidence 12356788888888999998876654 2479999985
No 170
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=99.84 E-value=6.6e-19 Score=213.73 Aligned_cols=320 Identities=15% Similarity=0.096 Sum_probs=213.4
Q ss_pred ccCceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--------CC-C
Q psy13354 26 QNNNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--------AE-A 90 (1342)
Q Consensus 26 ~~~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--------~~-~ 90 (1342)
..+.+++..+.. + .++.+.+++.+.+... ....|+...+..++++++++++.+.++ .+ +
T Consensus 32 ~~~~i~l~~g~p~~~~~~~p~~~~~~a~~~~~~~~------~~~~Y~~~~G~~~Lr~aia~~~~~~~~~~~~~~~~~~~~ 105 (412)
T PTZ00433 32 PKSIIKLSVGDPTLDGNLLTPAIQTKALVEAVDSQ------ECNGYPPTVGSPEAREAVATYWRNSFVHKESLKSTIKKD 105 (412)
T ss_pred CCCeeecCCcCCCCcCCCCCCHHHHHHHHHHhhcC------CCCCCCCCCCcHHHHHHHHHHHHhhccccccccCCCChh
Confidence 345688877663 2 3444888877766421 112344455667888877777765432 22 4
Q ss_pred ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEE
Q psy13354 91 ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI 170 (1342)
Q Consensus 91 ~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~li 170 (1342)
.+++++|+++|+..++.+++.+||+|+++.+.++.+ .......|..+..++++.++++.+|++++++.+++ +++++
T Consensus 106 ~i~it~G~~~al~~~~~~~~~~gd~vlv~~P~y~~~---~~~~~~~g~~~~~i~~~~~~~~~~d~~~l~~~~~~-~~~~i 181 (412)
T PTZ00433 106 NVVLCSGVSHAILMALTALCDEGDNILVPAPGFPHY---ETVCKAYGIEMRFYNCRPEKDWEADLDEIRRLVDD-RTKAL 181 (412)
T ss_pred hEEEeCChHHHHHHHHHHhcCCCCEEEEccCCcccH---HHHHHHcCCEEEEEecCccccCcCCHHHHHHHhcc-CceEE
Confidence 455565889999999999999999999877655543 44456677755555443334678999999988876 45666
Q ss_pred EEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---C-CcEEEecCCccCCCCCe---eE
Q psy13354 171 IAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---F-ADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 171 v~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~-~Divv~S~sK~l~gp~G---G~ 238 (1342)
++++++|| + ..++++|+++|++||++||+||+|....+....+.+... . ..++++||||.+ |.+| ||
T Consensus 182 ~~~~p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~-~~pGlRlG~ 260 (412)
T PTZ00433 182 IMTNPSNPCGSNFSRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRVILGGTAKNL-VVPGWRLGW 260 (412)
T ss_pred EEeCCCCCCCcccCHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceEEEccchhhc-CCCCeeEEE
Confidence 66666666 2 336889999999999999999999754432222121111 1 247789999999 6666 99
Q ss_pred EEEe------chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC
Q psy13354 239 ILMK------KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT 311 (1342)
Q Consensus 239 iv~~------~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~ 311 (1342)
++++ +++++.+...... .. +.+...+.++..++.+....++++.++.+.++++.+.+.|++. |+.+. .+.
T Consensus 261 ~i~~~p~~~~~~~~~~~~~~~~~-~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~ 337 (412)
T PTZ00433 261 LLLVDPHGNGGDFLDGMKRLGML-VC-GPCSVVQAALGEALLNTPQEHLEQIVAKLEEGAMVLYNHIGECIGLSPT-MPR 337 (412)
T ss_pred EEEeCCcccHHHHHHHHHHHhhc-cC-CCChHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhcCCCCccc-CCC
Confidence 9972 3466666553221 12 2334455555545443223467788889999999999999874 66543 356
Q ss_pred CCeEEEEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 312 KSHIILVDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 312 ~~~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+++++|+.++.. ..+.+++..+++++||.+.++..++. .+++|++++.
T Consensus 338 gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~------~~~iRis~~~ 390 (412)
T PTZ00433 338 GSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHM------PGFTRLTISR 390 (412)
T ss_pred eeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCC------CCeEEEEecC
Confidence 788999988642 13567888888778999998765543 2479999875
No 171
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=99.84 E-value=3.3e-19 Score=222.05 Aligned_cols=318 Identities=13% Similarity=0.043 Sum_probs=205.6
Q ss_pred cCceeeeecCC---CC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCH
Q psy13354 27 NNNIELIASEN---YT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSG 98 (1342)
Q Consensus 27 ~~~i~l~a~~n---~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sG 98 (1342)
.+.+.|..|+. .+ |+.+.+++.+++.. . ..|+...+..++++++++++....+ .+ +.+++++|+
T Consensus 146 ~~~i~l~~G~p~~~~~~~p~~~~~~~~~~~~~-~-------~~Y~~~~G~~~lReaia~~~~~~~~~~~~~~~I~it~G~ 217 (517)
T PRK13355 146 THILKLNIGNPAPFGFRTPDEVVYDMAQQLTD-T-------EGYSDSKGLFSARKAIMQYAQLKGLPNVDVDDIYTGNGV 217 (517)
T ss_pred CCeEEecCcCCCcCCCCCCHHHHHHHHHHhhc-C-------CCCCCCcChHHHHHHHHHHHHhcCCCCCChhHEEEeCcH
Confidence 35688887553 23 55588887777632 1 1255566677888877777765543 33 455666578
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++++..++.+++++||+|+++.+.++.+ .......|..+..++.+.+.+|.+|++++++.++++ ++++++++|+||
T Consensus 218 ~eal~~~~~~l~~~Gd~Vli~~P~y~~y---~~~~~~~g~~~v~~~~~~~~~~~~d~~~l~~~~~~~-~k~i~i~nP~NP 293 (517)
T PRK13355 218 SELINLSMSALLDDGDEVLIPSPDYPLW---TACVNLAGGTAVHYRCDEQSEWYPDIDDIRSKITSR-TKAIVIINPNNP 293 (517)
T ss_pred HHHHHHHHHHhCCCCCEEEEcCCCCcCH---HHHHHHCCCEEEEeecCcccCCCCCHHHHHHhcCcC-ceEEEEECCCCC
Confidence 8899999999999999999877665544 444566676444443333346889999999988764 455555566666
Q ss_pred -c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----CcEEEecCCccCCCCCe---eEEEEe--ch
Q psy13354 179 -Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----ADFITSTTHKSLRGPRG---GFILMK--KK 244 (1342)
Q Consensus 179 -~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~Divv~S~sK~l~gp~G---G~iv~~--~~ 244 (1342)
+ .. .+++|+++|++||++||+||+|....+....+.+.... .-++++||||.+ +++| ||++++ ++
T Consensus 294 TG~v~~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~~~~~~~~s~~~~~~~~~vi~~~S~SK~~-~~~G~RiG~~i~~~~~~ 372 (517)
T PRK13355 294 TGALYPREVLQQIVDIAREHQLIIFSDEIYDRLVMDGLEHTSIASLAPDLFCVTFSGLSKSH-MIAGYRIGWMILSGNKR 372 (517)
T ss_pred CCcCcCHHHHHHHHHHHHHcCcEEEEehhhhhhcCCCCCcccHHHhCCCCeEEEEecchhhc-cCcccceEEEEeeCchh
Confidence 2 22 48999999999999999999997654432222221111 124468999999 6667 999954 43
Q ss_pred ----hHHHHhhccCCccccCCcHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEE
Q psy13354 245 ----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIIL 317 (1342)
Q Consensus 245 ----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~ 317 (1342)
+++.+..... ...+.+.+.+.++..++... ..+++.. ..++.++++++.+.|.+. |+.+. .+.+++++|
T Consensus 373 ~~~~~~~~l~~~~~--~~~~~~~~~q~a~~~aL~~~~~~~~~~~~-~~~~~~~r~~l~~~L~~~~g~~~~-~p~g~fy~~ 448 (517)
T PRK13355 373 IAKDYIEGLNMLAN--MRLCSNVPAQSIVQTALGGHQSVKDYLVP-GGRVYEQRELVYNALNAIPGISAV-KPKAAFYIF 448 (517)
T ss_pred hHHHHHHHHHHHhc--CcCCcChHHHHHHHHHhcCCccHHHHHHH-HHHHHHHHHHHHHHHhcCCCcccC-CCCeeeEEE
Confidence 3333332211 11234455666665555321 1112332 234566788899999886 77754 466788889
Q ss_pred EEccCC----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 318 VDLRNK----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 318 i~~~~~----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++.. ..+.+++..+++++||.+.++..|+... .+++|++++.
T Consensus 449 ~~l~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~F~~~~----~~~~Ris~~~ 496 (517)
T PRK13355 449 PKIDVKKFNIHDDEQFALDLLHDKKVLIVQGTGFNWDK----PDHFRVVYLP 496 (517)
T ss_pred eecCcccCCCCCHHHHHHHHHHhCCEEEeCcchhCCCC----cCEEEEEeCC
Confidence 888642 2345788888888999999877664322 4679999853
No 172
>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase. This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.84 E-value=5e-19 Score=213.69 Aligned_cols=317 Identities=12% Similarity=0.051 Sum_probs=210.6
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC----C--CceEecCCH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA----E--AANVQPHSG 98 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~----~--~~vi~~~sG 98 (1342)
...+.+..+++..+ +.+++++.+.+.. . ..|+...+..++++++++++.+.+|. + +.+++++|+
T Consensus 28 ~~~i~l~~~~p~~~~~~~~~~a~~~~~~~-~-------~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga 99 (393)
T TIGR03538 28 KPPIALSIGEPKHPTPAFVLEALRENLHG-L-------STYPTTKGLPELRQAIARWLERRFDLPTGVDPERHVLPVNGT 99 (393)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhc-c-------CCCCCCCCCHHHHHHHHHHHHHhhCCcccCCCCceEEECCCc
Confidence 45688887775543 3377777665421 1 22444555668888888888776553 3 245666578
Q ss_pred HHHHHHHHHHccCCCCE--EEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcC
Q psy13354 99 SQANQAVFFSVLNPGDT--IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGA 174 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~--Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~ 174 (1342)
++|+..++.++++|||+ |+++.+.++.+ .......|. +++.++.+ +++.+|++++++.+.+ +++++++++
T Consensus 100 ~~al~~~~~~l~~~gd~~~vlv~~P~y~~~---~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~k~i~l~~ 173 (393)
T TIGR03538 100 REALFAFAQAVINPGQAPLVVMPNPFYQIY---EGAALLAGA--EPYFLNCTAENGFLPDFDAVPESVWR-RCQLLFVCS 173 (393)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCcch---HHHHHhcCC--eEEEeeccccCCCCCCHHHHHHHHhh-cceEEEEeC
Confidence 88999999999999996 77666554443 334456676 45555554 3467899999988865 556666667
Q ss_pred CCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCC------CC----CCcEEEecCCccCCCCCe--
Q psy13354 175 SAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNP------VP----FADFITSTTHKSLRGPRG-- 236 (1342)
Q Consensus 175 s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~------l~----~~Divv~S~sK~l~gp~G-- 236 (1342)
++|| +...+++|+++|++||++||+||+|....+... ...+. .. ...++++||||.+ +.+|
T Consensus 174 p~NPtG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~-~~~GlR 252 (393)
T TIGR03538 174 PGNPTGAVLSLDTLKKLIELADQYGFIIASDECYSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRS-NLPGLR 252 (393)
T ss_pred CCCCcCcccCHHHHHHHHHHHHHCCEEEEECcchhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhc-CCcccc
Confidence 7777 222589999999999999999999975443211 11111 00 1137899999987 5666
Q ss_pred -eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeE
Q psy13354 237 -GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHI 315 (1342)
Q Consensus 237 -G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~ 315 (1342)
||+++++++++.+........ .+.+.+.+.++..++. . .++++..++.++++++.+.+.|.+. +.+ ..+.++++
T Consensus 253 vG~~i~~~~l~~~~~~~~~~~~-~~~~~~~q~~~~~~l~-~-~~~~~~~~~~~~~~~~~~~~~L~~~-~~~-~~p~gg~f 327 (393)
T TIGR03538 253 SGFVAGDAEILKAFLRYRTYHG-CAMPIPTQLASIAAWN-D-EQHVRENRALYREKFAAVLEILGQV-LDL-ELPDAGFY 327 (393)
T ss_pred eEEEecCHHHHHHHHHHHHhhc-cCcCHHHHHHHHHHhc-C-hHHHHHHHHHHHHHHHHHHHHHHhh-Ccc-cCCCeeEE
Confidence 999999988887765432222 2233444444443432 2 2467777888899999999999874 333 24677899
Q ss_pred EEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCC--Cccccccccccccc
Q psy13354 316 ILVDLRNKKITGKIAESILESANIICNKNSIPNDPE--KPYFTSGIRLGSSA 365 (1342)
Q Consensus 316 v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~--~~~~~~~lRi~~~~ 365 (1342)
+|++++ ..+.+++..+++++||.+.|+..+.... ...+.+++|++++.
T Consensus 328 ~~~~~~--~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~~~Ris~~~ 377 (393)
T TIGR03538 328 LWPKVP--GDDEAFARALYEEENVTVLPGRFLAREAEGVNPGEGRVRIALVA 377 (393)
T ss_pred EEEECC--CCHHHHHHHHHHHCCEEEeCCccccccccCCCCCCCEEEEEecC
Confidence 999997 2346777788888899999887654321 11124679999875
No 173
>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]
Probab=99.84 E-value=5.5e-19 Score=204.04 Aligned_cols=285 Identities=17% Similarity=0.167 Sum_probs=207.4
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~ 115 (1342)
..+....++++.+.+.+. +++.++...++|+ .+++++|.++++.++ |||.|++.++.++ ++|||+
T Consensus 11 p~i~~~e~~~v~~vl~sg---------~i~~G~~v~~FE~----~~ae~~G~k~ava~~-sgT~AL~laL~al~ig~GDe 76 (374)
T COG0399 11 PSIGEEELAAVQEVLKSG---------WLTGGPFVRRFEQ----AFAEYLGVKYAVAVS-SGTAALHLALLALAIGPGDE 76 (374)
T ss_pred CCcchHHHHHHHHHHHcC---------CeecChHHHHHHH----HHHHHhCCCeEEEec-ChHHHHHHHHHhcCCCCCCE
Confidence 335556777777777532 3444666777787 999999999999998 9999999999977 799999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNIN 194 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~g 194 (1342)
|++++.++ ++..+.+...|. +++++++| +++.+|++.+++++++.+++++.++ .++.+.++++|.++|++||
T Consensus 77 VI~ps~Tf---vATan~i~~~Ga--~PVFvDid~~T~nid~~~ie~aIt~~tKAIipVh--l~G~~~dm~~i~~la~~~~ 149 (374)
T COG0399 77 VIVPSFTF---VATANAVLLVGA--KPVFVDIDPDTLNIDPDLIEAAITPRTKAIIPVH--LAGQPCDMDAIMALAKRHG 149 (374)
T ss_pred EEecCCch---HHHHHHHHHcCC--eEEEEecCCcccCCCHHHHHHHcccCCeEEEEeh--hccCCCCHHHHHHHHHHcC
Confidence 99888655 455666666777 78888888 6699999999999998766666664 5555579999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEec-hhHHHHhhccCCc--------------c
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMKK-KYKKIINSAVFPG--------------I 257 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~--------------~ 257 (1342)
++||+|+||++|..+.++..+.+. |+.++||+ |.++...||++++++ ++.+.++.....+ .
T Consensus 150 l~vIEDaAqa~Ga~y~gk~vGt~G--d~~~fSF~~~K~ittgEGGav~tnd~ela~k~~~lr~hG~~~~~~~~y~~~~~G 227 (374)
T COG0399 150 LPVIEDAAQAHGATYKGKKVGSFG--DIGAFSFHATKNLTTGEGGAVVTNDEELAEKARSLRNHGLSRDAVFKYLHEELG 227 (374)
T ss_pred CeEEEEcchhccCeecCccccccc--ceEEEEecCCCCccccCceEEEeCCHHHHHHHHHHHHhCcCCCccccceeeecc
Confidence 999999999999999988877776 67777776 999777889999987 5555554322111 1
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCC----CeEEEEEccCCCCCHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTK----SHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~----~~~v~i~~~~~~~~~~~~~~ 332 (1342)
++.-++..++|...+.++.+ ++..++.+++++++.+.|++.. +.+...+.+ .+...+.+++...+.+.+..
T Consensus 228 ~N~rm~~iqAAigl~QL~~l----~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~~~~R~~l~~ 303 (374)
T COG0399 228 YNYRLTEIQAAIGLAQLERL----DEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEEGISRDALME 303 (374)
T ss_pred cccCHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCCCCCHHHHHH
Confidence 23333455666655555544 4556777888889999998753 443332222 24445555554557778888
Q ss_pred HHHHCCceeeeccCCC
Q psy13354 333 ILESANIICNKNSIPN 348 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~ 348 (1342)
.|++.||.......|.
T Consensus 304 ~L~~~gi~~~~~~~P~ 319 (374)
T COG0399 304 SLKEAGVGAVVYFRPL 319 (374)
T ss_pred HHHhCCCCceEEeecc
Confidence 8888888844444443
No 174
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=99.84 E-value=8.7e-19 Score=210.32 Aligned_cols=326 Identities=14% Similarity=0.132 Sum_probs=219.6
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHcc
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~ 110 (1342)
.++..++|+.+++++.+.+...+ .++.+..+.......+...++++.+++++|.+ ..+++++|+++|+..++.++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~ 82 (373)
T cd06453 5 NAATSQKPQPVIDAIVDYYRHYN--ANVHRGVHELSARATDAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLG 82 (373)
T ss_pred CccccCCCHHHHHHHHHHHHhcC--CCCCCCccHHHHHHHHHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhh
Confidence 35567888889999888875322 33333333333445566666888999999977 355566689999999999997
Q ss_pred C---CCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 111 N---PGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 111 ~---pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
. +||+|++++..+++..... ...+..|..+.. ++.+.++.+|++++++.+.+ ++++++++.++++ ...|++
T Consensus 83 ~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~~~~~--v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~~~~ 159 (373)
T cd06453 83 RANKPGDEIVTSVMEHHSNIVPWQQLAERTGAKLKV--VPVDDDGQLDLEALEKLLTE-RTKLVAVTHVSNVLGTINPVK 159 (373)
T ss_pred hcCCCCCEEEECcchhHHHHHHHHHHHhhcCcEEEE--eecCCCCCcCHHHHHHHhcC-CceEEEEeCcccccCCcCCHH
Confidence 7 8999998876665543322 233456774444 45567788999999999876 5566666554444 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC--------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP-------- 255 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~-------- 255 (1342)
+|.++|+++|++|++|++|+.|...... ....+|++++|+||++++ .| |++++++++++.+......
T Consensus 160 ~i~~~~~~~~~~li~D~a~~~~~~~~~~---~~~~~d~~~~s~~K~~~~-~g~g~~~~~~~~~~~~~~~~~g~~~~~~~~ 235 (373)
T cd06453 160 EIGEIAHEAGVPVLVDGAQSAGHMPVDV---QDLGCDFLAFSGHKMLGP-TGIGVLYGKEELLEEMPPYGGGGEMIEEVS 235 (373)
T ss_pred HHHHHHHHcCCEEEEEhhhhcCceeeec---cccCCCEEEeccccccCC-CCcEEEEEchHHhhcCCCeecCCCcccccc
Confidence 9999999999999999998766542110 011369999999999955 66 9999999887776543211
Q ss_pred ------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC-CCCeEEEEEcc
Q psy13354 256 ------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG-TKSHIILVDLR 321 (1342)
Q Consensus 256 ------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~-~~~~~v~i~~~ 321 (1342)
+..++++.....++..++......+++.+.++..++++++.+.|.+. ++++..++ ...+++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~t~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 315 (373)
T cd06453 236 FEETTYADLPHKFEAGTPNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPGVRVYGDAEDRAGVVSFNLE 315 (373)
T ss_pred ccccccCCCccccCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCeEEEEEC
Confidence 11134555556666666666655577888899999999999999887 57775421 23557777765
Q ss_pred CCCCCHHHHHHHHHHCCceeeeccCCCCCC-Ccc-ccccccccccccccc
Q psy13354 322 NKKITGKIAESILESANIICNKNSIPNDPE-KPY-FTSGIRLGSSAITTR 369 (1342)
Q Consensus 322 ~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~-~~~~lRi~~~~~~t~ 369 (1342)
.. +.+.+...+.++||.+.+......+. ..+ ..+++|++++..+|.
T Consensus 316 ~~--~~~~i~~~l~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~ 363 (373)
T cd06453 316 GI--HPHDVATILDQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTE 363 (373)
T ss_pred Cc--CHHHHHHHHHHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCH
Confidence 42 33444444455799987654211100 000 135799999988774
No 175
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=99.84 E-value=8.5e-19 Score=212.63 Aligned_cols=325 Identities=16% Similarity=0.155 Sum_probs=214.3
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al-- 109 (1342)
++...+|+.+.+++.+.+...+ +.+.++.+.......+..+++++.+++++|.+ +.+++++|+++++..++.++
T Consensus 25 ~~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~ 102 (403)
T TIGR01979 25 AATSQKPQQVIDAVAEYYRNSN--ANVHRGIHTLSVRATEAYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGD 102 (403)
T ss_pred ccccCCCHHHHHHHHHHHHhCC--CCCCCCccHHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhh
Confidence 4456777889999887765433 22222111111222334455778999999987 45677768899999888875
Q ss_pred --cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
+++||+|+++...|++....+ ......|..+.. ++.++++.+|++++++.+.+ ++++++++.++++ ...|++
T Consensus 103 ~~~~~g~~vl~~~~~~~s~~~~~~~~~~~~g~~~~~--v~~~~~~~~~~~~l~~~i~~-~~~lv~~~~~~~~tG~~~~~~ 179 (403)
T TIGR01979 103 SNLKAGDEIVISEMEHHANIVPWQLLAERTGATLKF--IPLDDDGTLDLDDLEKLLTE-KTKLVAITHVSNVLGTVNPVE 179 (403)
T ss_pred hcCCCCCEEEECcchhhHHHHHHHHHHHhcCcEEEE--EecCCCCCCCHHHHHHHhcc-CCeEEEEEcccccccccCCHH
Confidence 578999998887776654333 334456764444 45567788999999999876 4566665554443 455999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC---------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF--------- 254 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~--------- 254 (1342)
+|.++|+++|+++++|++|+.|...... . ...+|++++|+||++ ||.| |++++++++.+.+.....
T Consensus 180 ~i~~~~~~~~~~~ivD~a~~~g~~~~~~--~-~~~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~g~~~~~~~~ 255 (403)
T TIGR01979 180 EIAKLAHQVGAKVLVDGAQAVPHMPVDV--Q-ALDCDFYVFSGHKMY-GPTGIGVLYGKEELLEQMPPFLGGGEMIAEVS 255 (403)
T ss_pred HHHHHHHHcCCEEEEEchhhcCccccCc--c-ccCCCEEEEeccccc-CCCCceEEEEchHHHhcCCCeecCCCceeecc
Confidence 9999999999999999999876542110 0 113699999999988 8888 999999887766542111
Q ss_pred -----------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC---CCeEEEEE
Q psy13354 255 -----------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT---KSHIILVD 319 (1342)
Q Consensus 255 -----------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~---~~~~v~i~ 319 (1342)
.+..++++.....++..++....+.+.+.+.++..+.++++.+.|.+. |+++..+.. .++++.+.
T Consensus 256 ~~~~~~~~~~~~~~~gt~~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~g~~~~~~~~~~~~~~~v~~~ 335 (403)
T TIGR01979 256 FEETTYNEAPHKFEAGTPNIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEIPGLRIYGPRDAEDRGGIISFN 335 (403)
T ss_pred cCccccCCChhhcCCCCccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccccCceEEEE
Confidence 011245555666666666655444467778899999999999999886 788765321 24566666
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCC-cc-ccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEK-PY-FTSGIRLGSSAITTR 369 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~-~~~~lRi~~~~~~t~ 369 (1342)
++.. +...+...|+++||.+.++.....+.. .+ ..+.+|++++.+++.
T Consensus 336 ~~~~--~~~~~~~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~ 385 (403)
T TIGR01979 336 VEGV--HPHDVGTILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTE 385 (403)
T ss_pred eCCc--CHHHHHHHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCH
Confidence 6542 233445666778999976431100000 00 024699999988753
No 176
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=99.84 E-value=3.1e-19 Score=218.70 Aligned_cols=325 Identities=14% Similarity=0.096 Sum_probs=216.2
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccC------CCCCCccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecC
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEG------YPGKRYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPH 96 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g------~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~ 96 (1342)
..|.|..+||.++..++........+..... ......|....+..+|++++++++.+.+| .+ +.+++++
T Consensus 39 g~i~L~~~En~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Y~~~~G~~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~ 118 (468)
T PLN02450 39 GIIQMGLAENQLSFDLIESWLAKNPDAAGLKRNGQSIFRELALFQDYHGLPAFKNALAEFMSEIRGNKVTFDPNKLVLTA 118 (468)
T ss_pred eeEEeehhHhHhhHHHHHHHHHhCchhhhcccccccchhhhhcCCCCCChHHHHHHHHHHHHHhhCCCCCcChHHeEEcc
Confidence 4588999999988875444433321100000 01112355556677899988888887655 22 4455565
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecC--CCCCCCCHHHHHHHHHh-----cCCe
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGL--NKKEKIDYKKVEYLAKK-----NKPK 168 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~-----~~~~ 168 (1342)
|+++++..++.++++|||.|+++.+.|+++. ..+. ..|. ++++++. ++++.+|++.+++.+.+ .+++
T Consensus 119 Ga~~al~~l~~~l~~pGd~Vlv~~P~Y~~~~---~~~~~~~g~--~~v~v~~~~~~~~~~~~~~le~~~~~~~~~~~~~k 193 (468)
T PLN02450 119 GATSANETLMFCLAEPGDAFLLPTPYYPGFD---RDLKWRTGV--EIVPIHCSSSNGFQITESALEEAYQQAQKLNLKVK 193 (468)
T ss_pred ChHHHHHHHHHHhCCCCCEEEECCCCCCchH---HHHhhcCCc--EEEEEecCCccCCcCCHHHHHHHHHHHHhcCCCee
Confidence 7788999999999999999998776665543 2333 3566 5555565 35677899999988764 2567
Q ss_pred EEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-------------CCCcEEEecCCcc
Q psy13354 169 LIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-------------PFADFITSTTHKS 230 (1342)
Q Consensus 169 liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-------------~~~Divv~S~sK~ 230 (1342)
++++++|+|| +...+++|+++|++||++||+||+|+...+....+.+.+ ...-++++||||.
T Consensus 194 ~v~l~nP~NPTG~~~s~e~l~~ll~~a~~~~~~iI~DE~Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~ 273 (468)
T PLN02450 194 GVLITNPSNPLGTTTTRTELNLLVDFITAKNIHLISDEIYSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKD 273 (468)
T ss_pred EEEEecCCCCCCcccCHHHHHHHHHHHHHCCcEEEEEccccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEecccc
Confidence 7777777777 333688999999999999999999975444322222111 1124778999999
Q ss_pred CCCCCe---eEEEEech-hHHHHhhccCCccccCCcHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 231 LRGPRG---GFILMKKK-YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 231 l~gp~G---G~iv~~~~-l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
| |.+| ||++++++ +.+.+... ..+ +..+.+.+.++..++.+. ...++++.++++.++++.+.+.|++.|+
T Consensus 274 ~-~l~GlRiG~li~~~~~l~~~~~~~-~~~--~~~s~~~Q~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~gi 349 (468)
T PLN02450 274 L-GLPGFRVGAIYSNDEMVVSAATKM-SSF--GLVSSQTQYLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAAGI 349 (468)
T ss_pred C-CCCCccEEEEEECCHHHHHHHHHH-hhc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 9 6666 99999865 45555443 222 223355555555444331 1124667788999999999999999988
Q ss_pred EEeeCCCCCeEEEEEccCCCC------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRNKKI------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~~------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++. .+.+++++|++++.... ..+++..+++++||.+.|+..++... ++++|++++..
T Consensus 350 ~~~-~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll~~~gV~v~PG~~f~~~~----~g~~Rl~f~~~ 412 (468)
T PLN02450 350 KCL-KSNAGLFCWVDMRHLLKSNTFEAEMELWKKIVYEVKLNISPGSSCHCTE----PGWFRVCFANM 412 (468)
T ss_pred ccc-CCCceEEEEEEchHhcCcCCchHHHHHHHHHHHhCCEEEeCccccCCCC----CCEEEEEecCC
Confidence 754 35677899999864221 13567778888899999887665432 46799999873
No 177
>PRK02948 cysteine desulfurase; Provisional
Probab=99.84 E-value=3.8e-19 Score=214.02 Aligned_cols=325 Identities=15% Similarity=0.108 Sum_probs=218.4
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~- 110 (1342)
.++..++++.+++++.+.+...+ +.+.+.+. .......+.+.+++.+++++|.+ +.+++++|+++++..++.+++
T Consensus 6 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~ 82 (381)
T PRK02948 6 YAATTPMSKEALQTYQKAASQYF--GNESSLHD-IGGTASSLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLN 82 (381)
T ss_pred CCCCCCCCHHHHHHHHHHHHhcC--CCCccccH-HHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 34566788889999988775322 22322222 22334456667888999999976 566677688999998888775
Q ss_pred ---CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 111 ---NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 111 ---~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
++||+|++....|+++...+..++..|..+..+ +.++++.+|++++++.+++ .+++++++.++++ ...|+++
T Consensus 83 ~~~~~g~~vv~~~~~h~s~~~~~~~~~~~g~~v~~v--~~~~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~~ 159 (381)
T PRK02948 83 ALPQNKKHIITTPMEHASIHSYFQSLESQGYTVTEI--PVDKSGLIRLVDLERAITP-DTVLASIQHANSEIGTIQPIAE 159 (381)
T ss_pred hccCCCCEEEECCcccHHHHHHHHHHHhCCCEEEEE--eeCCCCCCCHHHHHHhcCC-CCEEEEEECCcCCcEeehhHHH
Confidence 578999988877776666665666677755444 5566788999999998865 4566666665555 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhH-HHHhh---ccCCccccC
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYK-KIINS---AVFPGIQGG 260 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~-~~l~~---~~~~~~~~~ 260 (1342)
|.++|+++|+++++|++|.+|...... .. ..+|++++|+||++ ||.| |+++.++++. ..+.. ....+..++
T Consensus 160 I~~l~~~~~~~vivD~~~~~g~~~~~~--~~-~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~~~~~~~~~~t 235 (381)
T PRK02948 160 IGALLKKYNVLFHSDCVQTFGKLPIDV--FE-MGIDSLSVSAHKIY-GPKGVGAVYINPQVRWKPVFPGTTHEKGFRPGT 235 (381)
T ss_pred HHHHHHHcCCEEEEEChhhccccccCc--cc-CCCCEEEecHHhcC-CCCcEEEEEEcCCCCCCCcccCCCCCCCcCCCC
Confidence 999999999999999998877542110 00 13699999999988 8988 9999887641 11110 011224466
Q ss_pred CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCC----eEEEEEccCCCCCHHHHHHHHHH
Q psy13354 261 PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKS----HIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 261 ~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~----~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
++.+...++.+++....+ +.++.++++.++++++.+.|++.|+++......+ .++.+.++.. ...++... |++
T Consensus 236 ~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~-l~~ 312 (381)
T PRK02948 236 VNVPGIAAFLTAAENILK-NMQEESLRFKELRSYFLEQIQTLPLPIEVEGHSTSCLPHIIGVTIKGI-EGQYTMLE-CNR 312 (381)
T ss_pred ccHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhcCCCCEEEeCCCccCcCCEEEEEeCCC-CHHHHHHh-ccc
Confidence 777888888878776554 7788889999999999999999887654422112 2333333321 23345544 566
Q ss_pred CCceeeeccC-------CCC-----CC-Ccccccccccccccccccc
Q psy13354 337 ANIICNKNSI-------PND-----PE-KPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 337 ~GI~v~~~~~-------p~~-----~~-~~~~~~~lRi~~~~~~t~~ 370 (1342)
+||.++.+.. |.. .. .+...+.+|+|++.++|.+
T Consensus 313 ~gI~v~~g~~c~~~~~~p~~~~~~~~~~~~~~~~~lRis~~~~~t~~ 359 (381)
T PRK02948 313 RGIAISTGSACQVGKQEPSKTMLAIGKTYEEAKQFVRFSFGQQTTKD 359 (381)
T ss_pred CCEEEEchHhcCCCCCCCCHHHHHcCCChHHhCceEEEEcCCCCCHH
Confidence 7999986431 110 00 0001357999999887754
No 178
>PRK07590 L,L-diaminopimelate aminotransferase; Validated
Probab=99.84 E-value=6.9e-19 Score=213.44 Aligned_cols=318 Identities=15% Similarity=0.095 Sum_probs=203.8
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~ 102 (1342)
+.+.+..+++.. ++.+.+++.+.+.... . ......|+...+..+|++++++++.+..|.+ +.+++++|+.+|+
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al 112 (409)
T PRK07590 35 KIIRLGIGDVTQPLPPAVIEAMHKAVDEMG-T-AETFRGYGPEQGYDFLREKIAENDYQARGCDISADEIFISDGAKCDT 112 (409)
T ss_pred ceEEecCcCCCCCCCHHHHHHHHHHHhccc-c-cCCccCCCCCCCCHHHHHHHHHHHHHhcCCcCChhhEEECCCHHHHH
Confidence 457888877553 3447888777764211 0 0111234455666788887777776655543 4555564777788
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCce---------eEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEE
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW---------FNSICYGLNK--KEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~---------~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv 171 (1342)
..+ ..++.|||+|++..+.|+.+... +...|.. .++++++.+. ++.+|.+ ..++++++
T Consensus 113 ~~l-~~~~~~gd~V~v~~P~Y~~~~~~---~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~d~~-------~~~~k~i~ 181 (409)
T PRK07590 113 GNI-LDIFGPDNTIAVTDPVYPVYVDT---NVMAGRTGEANEDGRYSGIVYLPCTAENNFVPELP-------EEKVDIIY 181 (409)
T ss_pred HHH-HHhcCCCCEEEEeCCCCcchHHH---HHHcCCcccccccccccceeEeecccccCCcccCc-------ccCceEEE
Confidence 875 45678999999887666555433 3444442 1255556542 3444432 14567777
Q ss_pred EcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC---CcEEEecCCccCCCCCe---eE
Q psy13354 172 AGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF---ADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 172 ~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~---~Divv~S~sK~l~gp~G---G~ 238 (1342)
+++++|| +...+++|+++|++||++||+||+|....+........ ++. ..++++||||++ |.+| ||
T Consensus 182 l~nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~pGlRiG~ 260 (409)
T PRK07590 182 LCFPNNPTGTVLTKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECAIEFRSFSKTA-GFTGTRCAY 260 (409)
T ss_pred EeCCCCCcCCcCCHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccceEEEecCcccc-CCcCceeEE
Confidence 7777777 33368899999999999999999997644322111111 111 247789999999 6666 99
Q ss_pred EEEechhHHHH-----------hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 239 ILMKKKYKKII-----------NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 239 iv~~~~l~~~l-----------~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
+++++++++.+ ........+.+.+.+.+.++..++......++++.++.+.++++++.+.|.+.|+.+.
T Consensus 261 ~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~ 340 (409)
T PRK07590 261 TVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDYYMENAKIIREGLESAGFEVY 340 (409)
T ss_pred EEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCcee
Confidence 99999887621 1111111222333455555554443222246777888999999999999999887753
Q ss_pred eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+.+++++|+++++...+.+++..+++++||.+.++..++... .+++|+++.
T Consensus 341 -~~~g~~f~wi~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~----~~~iRi~~~ 392 (409)
T PRK07590 341 -GGVNAPYIWVKTPDGMSSWDFFDKLLQEANVVGTPGSGFGPSG----EGYFRLSAF 392 (409)
T ss_pred -cCCcceEEEEECCCCCCHHHHHHHHHHHCCEEEeChhHhCCCC----CCEEEEEcc
Confidence 3467899999998654456778888888899999876554322 357999853
No 179
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=99.84 E-value=6.3e-19 Score=213.49 Aligned_cols=320 Identities=11% Similarity=0.028 Sum_probs=208.8
Q ss_pred cCceeeeecCC-----CC-cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCC
Q psy13354 27 NNNIELIASEN-----YT-SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHS 97 (1342)
Q Consensus 27 ~~~i~l~a~~n-----~l-~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~s 97 (1342)
.+.|.|..++. +. ++.+++++.+++.... ...|+...+..++++++++++.+.+|.+ +.+++++|
T Consensus 32 ~~~i~l~~G~p~~~~~~~~p~~~~~a~~~~~~~~~------~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~I~it~G 105 (409)
T PLN00143 32 RLAISFGFGDPSCFECFRTTNIAEDAIVEAVRSAK------FNSYAPTGGILPARRAIADYLSNDLPYQLSPDDVYLTLG 105 (409)
T ss_pred CceeeCCCCCCCCCCCCCCCHHHHHHHHHHHhCcC------CCCCCCCCCCHHHHHHHHHHHHhhcCCCCCHhhEEEecC
Confidence 35577777654 33 3448888887775321 1224444556688888888877765543 44555658
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+++|+..++.++++|||.|++..+.++.+ .......|..+..+++..++++.+|++++++++.++++.++++ +|+|
T Consensus 106 ~~~al~~~~~~l~~~gd~v~v~~P~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~~~-nP~N 181 (409)
T PLN00143 106 CKHAAEIIIKVLARPEANILLPRPGFPDV---ETYAIFHHLEIRHFDLLPEKGWEVDLDAVEAIADENTIAMVII-NPGN 181 (409)
T ss_pred hHHHHHHHHHHHcCCCCEEEEcCCCCcCH---HHHHHHcCCEEEEEeccCCCCCcCCHHHHHHhcccCCEEEEEE-CCCC
Confidence 88899999999999999999877665544 3344566664444433223467899999999886654455555 4555
Q ss_pred C-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCCC--CcEEEecCCccCCCCCe---eEEEEe-c-
Q psy13354 178 S-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVPF--ADFITSTTHKSLRGPRG---GFILMK-K- 243 (1342)
Q Consensus 178 ~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~~--~Divv~S~sK~l~gp~G---G~iv~~-~- 243 (1342)
| +...+++|+++|++||++||+||+|....+....+.. .+.. ..++++||||.| +.+| ||++++ +
T Consensus 182 PTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f-~~pGlRvG~~v~~~p~ 260 (409)
T PLN00143 182 PCGSVYSYEHLNKIAETARKLGILVIADEVYGHIVFGSKPFVPMGLFASIVPVITLGSISKRW-MIPGWGLGWLVTCDPS 260 (409)
T ss_pred CCCCccCHHHHHHHHHHHHHcCCeEEEEccccccccCCCCCcchhhhcccCcEEEEccchhhc-CCCccceEEEEeeCch
Confidence 5 2225889999999999999999999765442221111 1111 247889999998 6666 999984 3
Q ss_pred hh------HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE-eeCCCCCeEE
Q psy13354 244 KY------KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI-VSGGTKSHII 316 (1342)
Q Consensus 244 ~l------~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~-~~~~~~~~~v 316 (1342)
.+ ++.+........+ ++.+.+.++..++.+....++++..+++.++++++.+.|.+.+... ...+.+++++
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~--~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~p~gg~f~ 338 (409)
T PLN00143 261 GLLQICEIADSIKKALNPAPF--PPTFIQAAIPEILEKTTEDFFSKTINILRAALAFCYDKLKEIPCIMCPQKAEGAFFA 338 (409)
T ss_pred hhhhhHHHHHHHHHHHhccCC--CCchHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCeeEEE
Confidence 23 2333332222211 2344555555444332234677788888999999999998865332 2245678999
Q ss_pred EEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 317 LVDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 317 ~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
|++++.. ..+.+++..+++++||.+.|+..++. .+++|++++.
T Consensus 339 w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~------~~~iRi~~~~ 386 (409)
T PLN00143 339 LVKLNLLLLEDIEDDMEFCLKLAKEESLIILPGVTVGL------KNWLRITFAV 386 (409)
T ss_pred EEecchhhcCCCCCHHHHHHHHHHhCCEEEeCccccCC------CCeEEEEEcC
Confidence 9999742 23457777888888999998766542 3579999984
No 180
>PRK07324 transaminase; Validated
Probab=99.84 E-value=5.2e-19 Score=211.65 Aligned_cols=310 Identities=15% Similarity=0.138 Sum_probs=204.3
Q ss_pred ceeeeecCC-CCcH-HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-CC-CceEecCCHHHHHHH
Q psy13354 29 NIELIASEN-YTSL-AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-AE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 29 ~i~l~a~~n-~l~~-~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-~~-~~vi~~~sGs~A~~~ 104 (1342)
.+.+..++. +.+| .+ +++.+++.+. ..+ |+...+..++++ .++++++ .+ +.+++++|+++|+..
T Consensus 28 ~~~~~~~e~~~~~~~~~-~~~~~~~~~~-~~~------Y~~~~G~~~lr~----~ia~~~~~~~~~~vi~t~G~~~al~~ 95 (373)
T PRK07324 28 IDSLTLEELLALAGKNP-EAFYQELGQK-KLT------YGWIEGSPEFKE----AVASLYQNVKPENILQTNGATGANFL 95 (373)
T ss_pred CCCCcHHHHHhccCcch-HHHHHHHhcC-Ccc------CCCCCCCHHHHH----HHHHHhcCCChhhEEEcCChHHHHHH
Confidence 345555552 2323 35 7766666422 112 333344557777 5555543 33 445555588999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|++.. +++......+...|..+..++++.+.++.+|++++++.+++ +++++++++++|| ...+
T Consensus 96 ~~~~l~~~gd~Vl~~~---P~y~~~~~~~~~~g~~v~~v~~~~~~~~~~d~~~l~~~~~~-~~kli~i~~p~NPtG~~~~ 171 (373)
T PRK07324 96 VLYALVEPGDHVISVY---PTYQQLYDIPESLGAEVDYWQLKEENGWLPDLDELRRLVRP-NTKLICINNANNPTGALMD 171 (373)
T ss_pred HHHHhCCCCCEEEEcC---CCchhHHHHHHHcCCEEEEEecccccCCCCCHHHHHHhCCC-CCcEEEEeCCCCCCCCCCC
Confidence 9999999999999765 44444455566777755444443334567899999988765 4567676666666 2234
Q ss_pred ---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 183 ---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 183 ---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
+++|+++|++||++||+|++|..... .+..++..+. ..++++|+||++ |++| ||+++++++++.++....
T Consensus 172 ~~~l~~i~~~a~~~~~~ii~De~y~~l~~-~~~~~s~~~~~~~~I~~~s~SK~~-~~~G~RiG~i~~~~~li~~~~~~~~ 249 (373)
T PRK07324 172 RAYLEEIVEIARSVDAYVLSDEVYRPLDE-DGSTPSIADLYEKGISTNSMSKTY-SLPGIRVGWIAANEEVIDILRKYRD 249 (373)
T ss_pred HHHHHHHHHHHHHCCCEEEEEcccccccc-CCCCCChhhccCCEEEEecchhhc-CCccceeEEEecCHHHHHHHHHHhC
Confidence 89999999999999999999865333 2222222221 247889999999 6667 999999999888877543
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
....+ .+...+.++..++.. ....++..++.+.++++.+.+.|.+. ++.+.. |.++++.|+.++....+.+++.++
T Consensus 250 ~~~~~-~~~~~q~~a~~~l~~-~~~~l~~~~~~~~~~~~~l~~~l~~~~~~~~~~-p~gg~~~~i~~~~~~~~~~~~~~l 326 (373)
T PRK07324 250 YTMIC-AGVFDDMLASLALEH-RDAILERNRKIVRTNLAILDEWVAKEPRVSYVK-PKAVSTSFVKLDVDMPSEDFCLKL 326 (373)
T ss_pred cEEec-CChHHHHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEC-CCceEEEEEEeCCCCCHHHHHHHH
Confidence 33333 223344444444332 22356667777888888999988876 555533 456677777776555567888998
Q ss_pred HHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++||.+.|+..++. ++++|++++.
T Consensus 327 l~~~gv~v~pg~~F~~------~~~iRis~~~ 352 (373)
T PRK07324 327 LKETGVLLVPGNRFDL------EGHVRIGYCC 352 (373)
T ss_pred HHhcCEEEECccccCC------CCeEEEEecC
Confidence 8888999998876653 2479999875
No 181
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=99.83 E-value=1.3e-18 Score=210.69 Aligned_cols=321 Identities=14% Similarity=0.162 Sum_probs=210.7
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-- 109 (1342)
.++....|+.+++++.+.+.... ..++ ..|.......++.+.+++.+++++|.+ ..+++++|+++++..++.++
T Consensus 23 ~~~~~~~p~~v~~a~~~~~~~~~--~~~~-~~~~~~~~~~~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~ 99 (397)
T TIGR01976 23 NPAGTQIPQSVADAVSAALTRSN--ANRG-GAYESSRRADQVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISR 99 (397)
T ss_pred CCccCCCCHHHHHHHHHHHHhcC--CCCC-CCchHHHHHHHHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHh
Confidence 35556778889999888875321 1111 123223344456667888999999986 35667768888887776665
Q ss_pred -cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 110 -LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 110 -~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
++|||+|++.+..|++....+ ...+..|..+..+ +.++ ++.+|++++++.+++. +++++++.++++ ...|++
T Consensus 100 ~~~~gd~vl~~~~~~~s~~~~~~~~~~~~g~~~~~~--~~~~~~~~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~ 176 (397)
T TIGR01976 100 RWGPGDEVIVTRLDHEANISPWLQAAERAGAKVKWA--RVDEATGELHPDDLASLLSPR-TRLVAVTAASNTLGSIVDLA 176 (397)
T ss_pred cCCCCCEEEEcCCchHhHHHHHHHHHHhcCCEEEEE--eccccCCCcCHHHHHHhcCCC-ceEEEEeCCCCCCCccCCHH
Confidence 689999998776665544333 3446677755544 4443 5789999999998764 455555554444 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCc-------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPG------- 256 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~------- 256 (1342)
+|+++|++||+++++|++|..|... .... ..+|++++|+|||+ |+..|++++++++++.+......+
T Consensus 177 ~i~~~~~~~~~~~ivD~a~~~~~~~----~~~~~~~~d~~~~s~~K~~-g~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~ 251 (397)
T TIGR01976 177 AITELVHAAGALVVVDAVHYAPHGL----IDVQATGADFLTCSAYKFF-GPHMGILWGRPELLMNLPPYKLTFSYDTGPE 251 (397)
T ss_pred HHHHHHHHcCCEEEEehhhhccccC----CCHHHcCCCEEEEechhhc-CCceEEEEEcHHHHhhCCCccccCccCCCcc
Confidence 9999999999999999998654321 1111 13699999999999 776799999998887776432222
Q ss_pred --cccCCcHHHHHHHHHHHHHhccc--------------hHHHHHHHHHHHHHHHHHHHHhCC-cEEeeC---CCCCeEE
Q psy13354 257 --IQGGPLMHVIAAKAVAFKEVLKP--------------DFKIYQKQVVKNAKILSKILDQRG-IRIVSG---GTKSHII 316 (1342)
Q Consensus 257 --~~~~~~~~~~~Aaa~al~~~l~~--------------~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~---~~~~~~v 316 (1342)
..|+++.+...++..++...... .++...++..+.++++.+.|.+.+ +++..+ ...++++
T Consensus 252 ~~~~gt~~~~~~~~l~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~ 331 (397)
T TIGR01976 252 RFELGTPQYELLAGVVAAVDYLAGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTV 331 (397)
T ss_pred hhcCCCCCHHHHHHHHHHHHHHHHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceE
Confidence 22444445555554444333211 256667788889999999998875 877653 1245677
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccC--------CCCCCCccccccccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSI--------PNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~--------p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.+.+. ...++... |+++||.+..+.. ++.+.. .+++|+|++.++|.
T Consensus 332 ~~~~~~~-~~~~l~~~-L~~~gI~v~~~~~~~~~~~~~~~~~~~---~~~iRis~~~~~t~ 387 (397)
T TIGR01976 332 SFTVHGL-PPQRVVRR-LADQGIDAWAGHFYAVRLLRRLGLNDE---GGVVRVGLAHYNTA 387 (397)
T ss_pred EEEeCCc-CHHHHHHH-HHHCCeEEEeCccchHHHHHHhCCCCC---CCeEEEEeeccCCH
Confidence 7766532 23344544 4566999987532 233211 35799999998764
No 182
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=99.83 E-value=6.5e-19 Score=209.31 Aligned_cols=310 Identities=10% Similarity=0.051 Sum_probs=209.0
Q ss_pred eeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-C-ceEecCCHHHHHH
Q psy13354 30 IELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-A-ANVQPHSGSQANQ 103 (1342)
Q Consensus 30 i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~-~vi~~~sGs~A~~ 103 (1342)
+.+..+++.+ ++.+.+++.+... . . ..|....+..++++++++++.+.+|. + + .+++++|+++|+.
T Consensus 3 ~~~~~g~p~~~~~~~~~~~~~~~~~-~-~------~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~ 74 (350)
T TIGR03537 3 FDFGTGDPKEPTPPFIRKALIDAVP-E-V------SQYPSALGTKALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIF 74 (350)
T ss_pred EeccCCCCCCCCCHHHHHHHHHHHh-c-c------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHH
Confidence 3444444322 4447777766542 1 1 12444555678999888888877674 3 3 5666757788999
Q ss_pred HHHHHccCCC---CEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 104 AVFFSVLNPG---DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~pG---D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
.++.+++++| |+|+++.+.++. ....+...|. ++++++.+ +++.+|++++++++.+ +++++++++++||
T Consensus 75 ~~~~~~~~~g~~~d~Vl~~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~~~~-~~~~i~i~~p~NP 148 (350)
T TIGR03537 75 HFPLVFIDPEEDRRRVIFGTPGYPV---YERGALFAGG--EPTAVKLKKEDGFLLRLEKVEKSILE-ETKIVWINYPHNP 148 (350)
T ss_pred HHHHHHcCCCCCCceEEEcCCCCcc---hHHHHHhcCC--EEEEcccCcccCCccCHHHHHHhhhh-ccEEEEEeCCCCC
Confidence 9999999887 699977755544 4444566777 45555554 4567899999998876 4667666666666
Q ss_pred -c-ccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C-CCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 179 -Q-YID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P-FADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 179 -~-~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~-~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
+ ..+ +++|+++|++||++||+||+|....+. +...+.. + ...+++.|+||++ |.+| ||+++++++.+
T Consensus 149 tG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~i~~~s~SK~~-g~~GlRiG~~~~~~~~~~ 226 (350)
T TIGR03537 149 TGATAPRSYLKETIAMCREHGIILCSDECYTEIYFG-EPPHSALEVGIENVLAFHSLSKRS-GMTGYRSGFVAGDEKLIS 226 (350)
T ss_pred cCcccCHHHHHHHHHHHHHcCcEEEEeccccccccC-CCCCchhhcCcCCEEEEeeccccc-CCccccceeeecCHHHHH
Confidence 2 223 899999999999999999998754332 1111111 1 1247888999999 5556 99999988888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+......+..+.+ ...+.++..++. . ..+.++.++++.++++.+.+.|.+.|+.+. .+.+++++|++++....+.
T Consensus 227 ~~~~~~~~~~~~~~-~~~q~~~~~~l~-~-~~~~~~~r~~l~~~~~~~~~~l~~~g~~~~-~~~g~~~~~~~~~~~~~~~ 302 (350)
T TIGR03537 227 FLRKLRANFGVASP-DFVQAAAKAAWS-D-DNHVLERRKIFKRKRDLFIEFFNKVGLEYL-YPDATFYLWVKVPSGIDAK 302 (350)
T ss_pred HHHHHHHhhccCCC-HHHHHHHHHHhC-C-cHHHHHHHHHHHHHHHHHHHHHHHCCCccc-CCCeEEEEEEECCCCCCHH
Confidence 88765444433332 233343333332 1 236677788899999999999999888754 3556788999998654456
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+++..+++ +||.+.++..++... .+++|++++
T Consensus 303 ~l~~~L~~-~gv~v~~g~~f~~~~----~~~~Ri~~~ 334 (350)
T TIGR03537 303 DYALRLLE-NGIVVAPGENFGSGE----EGYVRVALV 334 (350)
T ss_pred HHHHHHHH-CCEEEcCchhhCCCC----CCEEEEEec
Confidence 67777665 699999876654322 357999875
No 183
>PRK06225 aspartate aminotransferase; Provisional
Probab=99.83 E-value=1.6e-18 Score=208.39 Aligned_cols=315 Identities=15% Similarity=0.124 Sum_probs=201.6
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
...|.+..+++.++ +.+.+++.+.+..... ..|....+..++++ .+++++|.+ ..+++++|+++|+.
T Consensus 28 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~~------~~y~~~~g~~~lr~----~ia~~l~~~~~~v~~~~g~t~al~ 97 (380)
T PRK06225 28 KEMIWMGQNTNHLGPHEEVREAMIRCIEEGEY------CKYPPPEGFPELRE----LILKDLGLDDDEALITAGATESLY 97 (380)
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhcCCC------CCCCCCcchHHHHH----HHHHhcCCCCCcEEEeCCHHHHHH
Confidence 45677877776543 4488888877743211 12333444556666 788888876 44555659999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c--
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q-- 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~-- 179 (1342)
.++.+++.+||+|+++.+.+ ......+...|..+..+++..+ .++.+|++.+++.+.+. ++++++++++|| +
T Consensus 98 ~~~~~~~~~gd~vl~~~p~y---~~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~-~~~v~l~~p~NptG~~ 173 (380)
T PRK06225 98 LVMRAFLSPGDNAVTPDPGY---LIIDNFASRFGAEVIEVPIYSEECNYKLTPELVKENMDEN-TRLIYLIDPLNPLGSS 173 (380)
T ss_pred HHHHHhcCCCCEEEEcCCCC---cchHHHHHHhCceEEeeccccccCCccCCHHHHHhhcCCC-ceEEEEeCCCCCCCcC
Confidence 99999999999999766444 3334445666774444433222 25689999999988754 556555555555 2
Q ss_pred --ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-CC-CCCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 180 --YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-NP-VPFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 180 --~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-~~-l~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
..++++|+++|++||+++|+|++|..... +... .. .....+++.||||++ |+.| ||+++++++++.+...
T Consensus 174 ~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~~i~~~s~SK~~-g~~G~RiG~i~~~~~l~~~~~~~ 250 (380)
T PRK06225 174 YTEEEIKEFAEIARDNDAFLLHDCTYRDFAR--EHTLAAEYAPEHTVTSYSFSKIF-GMAGLRIGAVVATPDLIEVVKSI 250 (380)
T ss_pred CCHHHHHHHHHHHHHCCcEEEEehhHHHHhc--cCCchhhcCCCCEEEEeechhhc-CCccceeEEEecCHHHHHHHHHH
Confidence 23699999999999999999999853221 1111 01 112357888999999 7666 9999999988887764
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCC-CHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKI-TGKIA 330 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~-~~~~~ 330 (1342)
.. ...+ .+...+.++..++.. ...+.+...+.+.++++.+.+.|++. |+.+...+..++++|+.++.... +.++.
T Consensus 251 ~~-~~~~-~~~~~~~~a~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~l~ 327 (380)
T PRK06225 251 VI-NDLG-TNVIAQEAAIAGLKV-KDEWIDRIRRTTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAGIDPEDLV 327 (380)
T ss_pred Hh-cccC-CCHHHHHHHHHHHhc-chHHHHHHHHHHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEcccccCCHHHHH
Confidence 22 1222 233344443333332 23355666666777888888888873 54332234567788998865433 34555
Q ss_pred HHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+. ++||.+.++..+... ++.+++|++++.
T Consensus 328 ~~l~-~~gi~v~~g~~~~~~---~~~~~iR~s~~~ 358 (380)
T PRK06225 328 EYLL-ERKIFVRQGTYTSKR---FGDRYIRVSFSI 358 (380)
T ss_pred HHHH-HCCEEEcCCcccCcC---CCCceEEEEeCC
Confidence 5555 669999886543221 124679999865
No 184
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=99.83 E-value=2.1e-18 Score=208.79 Aligned_cols=320 Identities=15% Similarity=0.083 Sum_probs=207.9
Q ss_pred cCceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCC
Q psy13354 27 NNNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHS 97 (1342)
Q Consensus 27 ~~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~s 97 (1342)
.+.+.+..+.. + .++.+.+++.+.+..... ..|+...+..++++++++.+....+. + +.+++++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~l~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G 104 (403)
T TIGR01265 31 KPIIPLSHGDPSVFGNLRTDPEAEEAVKDALRSGKF------NGYAPSVGALAAREAVAEYLSSDLPGKLTADDVVLTSG 104 (403)
T ss_pred CCeEEeCCCCCCccCCCCCCHHHHHHHHHHHhcCCC------CCCCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecC
Confidence 46688877753 2 344588887776643221 12334455556777555444433232 1 44556658
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
|++|+..++.+++.+||+|+++.+.++. ........|..+..++++.++++.+|++.+++.+.+.+..+++.+++|+
T Consensus 105 ~t~al~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~v~i~~p~NP 181 (403)
T TIGR01265 105 CSQAIEICIEALANPGANILVPRPGFPL---YDTRAAFSGLEVRLYDLLPEKDWEIDLDGLEALADEKTVAIVVINPSNP 181 (403)
T ss_pred hHHHHHHHHHHhCCCCCEEEEeCCCchh---HHHHHHHcCCEEEEecCCcccCCccCHHHHHHHhCcCccEEEEecCCCC
Confidence 8999999999999999999987765543 3344566677555444433456789999999988765444555444443
Q ss_pred Cccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---C-CcEEEecCCccCCCCCe---eEEEEec--h
Q psy13354 178 SQYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---F-ADFITSTTHKSLRGPRG---GFILMKK--K 244 (1342)
Q Consensus 178 ~~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~-~Divv~S~sK~l~gp~G---G~iv~~~--~ 244 (1342)
++.. ++++|+++|+++|++||+|++|....+....+.+... . .-++++||||.| +.+| ||+++++ +
T Consensus 182 tG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~pGlRiG~~v~~~~~~ 260 (403)
T TIGR01265 182 CGSVFSRDHLQKIAEVARKLGIPIIADEIYGHMVFGDAPFIPMASFASIVPVLSLGGISKRW-VVPGWRLGWIIIHDPHG 260 (403)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCccchhhhccCCcEEEEeeccccc-CCCcceEEEEEEeCchh
Confidence 3222 5899999999999999999998765443222222111 1 237789999998 5556 9999852 2
Q ss_pred -----hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEE
Q psy13354 245 -----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 245 -----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i 318 (1342)
+.+.+...... ..+++...+.++..++.+....++++.++++.++++++.+.|+.. |+.+. .+.+++++|+
T Consensus 261 ~~~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~~g~f~~~ 337 (403)
T TIGR01265 261 IFRDTVLQGLKNLLQR--ILGPATIVQGALPDILENTPQEFFDGKISVLKSNAELCYEELKDIPGLVCP-KPEGAMYLMV 337 (403)
T ss_pred hhHHHHHHHHHHHhhh--hcCCChHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCceeEEEE
Confidence 33444332211 122344556665555544333467778889999999999999886 66543 4677899999
Q ss_pred EccCCC-----CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 319 DLRNKK-----ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 319 ~~~~~~-----~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++... .+.+++..+++++||.+.++..++. .+++|++++.
T Consensus 338 ~~~~~~~~~~~~~~~~~~~l~~~~gv~v~pg~~f~~------~~~iRis~~~ 383 (403)
T TIGR01265 338 KLELELFPEIKDDVDFCEKLVREESVICLPGSAFGL------PNWVRITITV 383 (403)
T ss_pred eccccccCCCCCHHHHHHHHHHhCCEEEeCccccCC------CCeEEEEecC
Confidence 987531 3567778888888999998876642 3579999885
No 185
>PRK06855 aminotransferase; Validated
Probab=99.83 E-value=8.4e-19 Score=213.68 Aligned_cols=320 Identities=15% Similarity=0.049 Sum_probs=209.3
Q ss_pred CceeeeecCC-----CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHH
Q psy13354 28 NNIELIASEN-----YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGS 99 (1342)
Q Consensus 28 ~~i~l~a~~n-----~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs 99 (1342)
..+.+..++. .+|+.+.+++.+.+.+. ....|+...+..++++++.+++.+.+|.+ +.+++++|++
T Consensus 33 ~~~~~~~G~p~~~~~~~p~~~~~a~~~~~~~~------~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~ 106 (433)
T PRK06855 33 KITWENIGDPIAKGEKIPDWMKEIVAELVMDD------KSYGYCPTKGVLETREFLAELNNKRGGAQITPDDIIFFNGLG 106 (433)
T ss_pred cccccccCCCcccCCCCCHHHHHHHHHHhhcC------CCCCCCCCCCCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHH
Confidence 3455655554 34445777877665321 11235555667789998888888776643 3455555888
Q ss_pred HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhc-CCeEEEEcCCC
Q psy13354 100 QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKN-KPKLIIAGASA 176 (1342)
Q Consensus 100 ~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~-~~~liv~~~s~ 176 (1342)
+|+..++. ++.|||.|++..+.|+.+... .....|. ++++++.+ +++.+|++++++.++.. +++++++++++
T Consensus 107 ~al~~~~~-l~~~Gd~Vlv~~P~Y~~~~~~--~~~~~g~--~~v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~i~l~~P~ 181 (433)
T PRK06855 107 DAIAKIYG-LLRREARVIGPSPAYSTHSSA--EAAHAGY--PPVTYRLDPENNWYPDLDDLENKVKYNPSIAGILLINPD 181 (433)
T ss_pred HHHHHHHH-hcCCCCeEEEeCCCCchHHHH--HHHhcCC--eEEEEecccccCCCCCHHHHHHHHhcCCCceEEEEECCC
Confidence 89988885 789999999888777653211 1122344 55555554 45679999999998743 44555555666
Q ss_pred CC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---C-CCcEEEecCCccCCCCCe---eEEEEec-
Q psy13354 177 YS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---P-FADFITSTTHKSLRGPRG---GFILMKK- 243 (1342)
Q Consensus 177 ~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~-~~Divv~S~sK~l~gp~G---G~iv~~~- 243 (1342)
|| +...+++|+++|++||++||+||+|....+....+++.. . ...++++||||.+ +.+| ||+++++
T Consensus 182 NPTG~~~s~~~~~~l~~~a~~~~~~II~De~Y~~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~-~~pGlRiG~ii~p~~ 260 (433)
T PRK06855 182 NPTGAVYPKEILREIVDIAREYDLFIICDEIYNNIVYNGKKTVPLSEVIGDVPGIALKGISKEL-PWPGSRCGWIEVYNA 260 (433)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCCHHHHcCcCCeEEEecCcccc-CCCcceEEEEEEeCC
Confidence 66 333688999999999999999999986554322222211 1 1248899999999 6556 9999842
Q ss_pred -------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCe
Q psy13354 244 -------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSH 314 (1342)
Q Consensus 244 -------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~ 314 (1342)
.+++.+..... ...+++.+.+.++..++.+. ...++++.++.+.++++.+.+.|.+. |+.+ ..+.+++
T Consensus 261 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~Q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~~~~-~~p~gg~ 337 (433)
T PRK06855 261 DKDEVFKKYINSILNAKM--IEVCSTTLPQMAIPRIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPGLKV-NRTNGAF 337 (433)
T ss_pred chhhHHHHHHHHHHHhhc--cccCCChHHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCCeec-cCCCeeE
Confidence 22333322211 12234456666655555332 13467778888999999999999875 6554 3466789
Q ss_pred EEEEEccCCC---------------------------CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 315 IILVDLRNKK---------------------------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 315 ~v~i~~~~~~---------------------------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
++|+++++.. .+.+++..+++++||.+.|+..++... .++|++++...
T Consensus 338 ~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~-----~~~Rls~~~~~ 412 (433)
T PRK06855 338 YMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKGPVSPDKRFVYYLLASTGICVVPLSSFCTEL-----NGFRVTLLERD 412 (433)
T ss_pred EEeeccccccccccccCCcchhhhHHHHHHHHhcCCCchHHHHHHHHHHcCEEEecCCcCCCCC-----CceEEEECCCc
Confidence 9999997531 245677788888899999987765322 35999998743
No 186
>PRK08175 aminotransferase; Validated
Probab=99.83 E-value=1.4e-18 Score=209.96 Aligned_cols=318 Identities=14% Similarity=0.130 Sum_probs=210.8
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
.+.+.+..+... .++.+.+++.+.+.+. ....|....+..++++++++++.+.+|.. + .+++++|+++
T Consensus 29 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~------~~~~Y~~~~G~~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~ 102 (395)
T PRK08175 29 EDIIDFSMGNPDGPTPPHIVEKLCEVAQRP------DTHGYSTSRGIPRLRRAISRWYQDRYDVDIDPESEAIVTIGSKE 102 (395)
T ss_pred CCeEEcCCCCCCCCCCHHHHHHHHHHHhCC------CcCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHH
Confidence 445666655422 2333666665555321 11235556667799998888888776643 3 4666657778
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~ 178 (1342)
++..++.+++.|||+|+++.+.++.+ .......|. +++.++.++++ .+.++++++++.. +++++++++++||
T Consensus 103 ~l~~~~~~~~~~gd~Vlv~~P~y~~~---~~~~~~~g~--~~~~v~~~~~~-~~~~~l~~~l~~~~~~~~~v~i~~p~NP 176 (395)
T PRK08175 103 GLAHLMLATLDHGDTVLVPNPSYPIH---IYGAVIAGA--QVRSVPLVEGV-DFFNELERAIRESYPKPKMMILGFPSNP 176 (395)
T ss_pred HHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHHcCC--eEEEEecccCC-CcHHHHHHHHhhccCCceEEEEeCCCCC
Confidence 99999999999999999877665543 333345566 44555555332 2578888887753 4677777665666
Q ss_pred -c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--C---CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--P---FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~---~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+ . ..+++|+++|++||++||+|++|....+......+.. . ...++++||||.| |.+| ||+++++++
T Consensus 177 tG~~~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~pGlRiG~~~~~~~l 255 (395)
T PRK08175 177 TAQCVELEFFEKVVALAKRYDVLVVHDLAYADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSY-NMAGWRIGFMVGNPEL 255 (395)
T ss_pred CCCCCCHHHHHHHHHHHHHcCcEEEEecchHhhccCCCCCcchhcCCCcccCEEEEeeccccc-cCcchhheeeeCCHHH
Confidence 2 2 2468999999999999999999976544222212111 1 1236789999999 6666 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
++.+.........+ +..+.+.++..++.. ...+++..++.+.++++++.+.|...|+.+. .+.+++++|++++...
T Consensus 256 ~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~-~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~p~~g~~i~i~l~~~~~ 332 (395)
T PRK08175 256 VSALARIKSYHDYG-TFTPLQVAAIAALEG-DQQCVRDIAEQYKRRRDVLVKGLHEAGWMVE-MPKASMYVWAKIPEPYA 332 (395)
T ss_pred HHHHHHHHhhcccC-CCcHHHHHHHHHHhC-cHHHHHHHHHHHHHHHHHHHHHHHHcCCccc-CCCEEEEEEEECCcccC
Confidence 88877543222222 223444444444432 2346777888899999999999999887653 3567899999998643
Q ss_pred --CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 325 --ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 325 --~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+.+++..+++++||.+.++..++..+ .+++|++++
T Consensus 333 ~~~~~~~~~~l~~~~gv~v~p~~~f~~~~----~~~lRis~~ 370 (395)
T PRK08175 333 AMGSLEFAKKLLNEAKVCVSPGIGFGDYG----DTHVRFALI 370 (395)
T ss_pred CCCHHHHHHHHHHhCCEEEeCchhhCcCC----CCeEEEEeC
Confidence 245777788888899999876554322 357999886
No 187
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=99.83 E-value=1.1e-18 Score=210.37 Aligned_cols=318 Identities=20% Similarity=0.229 Sum_probs=207.0
Q ss_pred CceeeeecC--CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 28 NNIELIASE--NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~--n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+. ++ .+|.+.+++.+++. .+...... |....+..++.+++++++++++|.+..++++ +|++++..
T Consensus 34 ~~id~~~~~~~g~~~~~~~~~a~~~~~~-~~~~~~~~---~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~-sG~~a~~~ 108 (385)
T TIGR01825 34 EVINLSSNNYLGFADHPRLKEAAAQAIQ-QYGVGAGA---VRTIAGTLRLHEELEEKLAKFKKTEAALVFQ-SGFNTNQG 108 (385)
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHH-HcCCCCCc---cCcccCCcHHHHHHHHHHHHHhCCCcEEEEC-cHHHHHHH
Confidence 446666543 34 55668888888774 33222211 2222333477777888999999987766666 88999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC--c
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~--~ 179 (1342)
++.++++|||.|++....|+.+ ...+...|.. ...++ .+|++++++.+.+. +.+++++++..++ .
T Consensus 109 a~~~~~~~gd~vi~~~~~~~~~---~~~~~~~g~~--~~~~~-----~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~ 178 (385)
T TIGR01825 109 VLSALLRKGDIVLSDELNHASI---IDGLRLTKAT--KKIYK-----HADMDDLDRVLRENPSYGKKLIVTDGVFSMDGD 178 (385)
T ss_pred HHHHhCCCCCEEEEEccccHHH---HHHHHhcCCc--eEEeC-----CCCHHHHHHHHHhhccCCCeEEEEecCCcCCCC
Confidence 9999999999999776555433 3333445553 33222 36888888877653 3566666543333 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|.++|++||+++|+||+|+.|.++. +. +.+.....+++++|+||++ |+.|||+++++++++.+.....
T Consensus 179 ~~~~~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~gG~~~~~~~~~~~~~~~~~ 257 (385)
T TIGR01825 179 VAPLPEIVELAERYGAVTYVDDAHGSGVMGEAGRGTVHHFGLEDKVDIQVGTLSKAI-GVVGGYAAGHKELIEYLKNRAR 257 (385)
T ss_pred ccCHHHHHHHHHHhCCEEEEECcccccCcCCCCCccHhhcCCCcCCcEEEEeccHHh-hcCCCEEecCHHHHHHHHHhCc
Confidence 5589999999999999999999998765531 11 1111123588999999999 7778999999988888876444
Q ss_pred CccccCC-cHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGP-LMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~-~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
++..++. ..+.++++..++..... . .+..+++.++++++.+.|.+.|+++.. +..+++++.++....+.+++..+
T Consensus 258 ~~~~~~~~~~~~~~a~~~al~~~~~-~-~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~L 333 (385)
T TIGR01825 258 PFLFSTAQPPAVVAALAAAVDELQR-S-PELMERLWDNTRFFKAGLGKLGYDTGG--SETPITPVVIGDEKAAQEFSRRL 333 (385)
T ss_pred cccccCCCCHHHHHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHcCCCCCC--CCCCEEEEEECCHHHHHHHHHHH
Confidence 4444433 33444454444433322 2 246677888999999999988887643 23445665554322245677777
Q ss_pred HHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+++ ||.+.+..+|..+.+ ..++|++++..++.
T Consensus 334 ~~~-gi~v~~~~~~~~~~~---~~~iRi~~~~~~~~ 365 (385)
T TIGR01825 334 FDE-GIFAQSIVFPTVPRG---TARIRNIPTAEHTK 365 (385)
T ss_pred HHC-CcEEcccCCCCCCCC---CceEEEEEcCCCCH
Confidence 776 999876555543322 35799987766553
No 188
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=99.83 E-value=9.9e-19 Score=209.35 Aligned_cols=329 Identities=19% Similarity=0.222 Sum_probs=212.0
Q ss_pred ceeeeecC---CCCcHH----HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHH
Q psy13354 29 NIELIASE---NYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQA 101 (1342)
Q Consensus 29 ~i~l~a~~---n~l~~~----v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A 101 (1342)
.+.|.+++ |++++. +.+++.+++.. | ...|++..+..+|++ .+++++|.+++++++ +|+.|
T Consensus 13 ~~~l~~~~v~iDlltds~t~ams~~~~~a~~~----g---d~~Y~~~~g~~~Lee----aia~~~g~~~vv~t~-~Gt~A 80 (431)
T cd00617 13 VFLLRSEDVYIDLLTDSGTGAMSDYQWAAMML----G---DEAYAGSKSFYDLED----AVQDLFGFKHIIPTH-QGRGA 80 (431)
T ss_pred EEeCCCCCcCCCCCCCCCcHHHHHHHHHHHHh----C---CCccCCCCCHHHHHH----HHHHHHCCCeEEEcC-CHHHH
Confidence 35555554 445554 44444455431 1 223667777778888 788889998877777 99999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--------CCCCCHHHHHHHHHhc---CCeEE
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--------KEKIDYKKVEYLAKKN---KPKLI 170 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--------~~~id~e~Le~~i~~~---~~~li 170 (1342)
+..++.++++|||+|+ ++ +.+.++...+...|.....++++... .|.+|++++++.+++. ++++|
T Consensus 81 l~la~~al~~pGD~V~-~~---~~f~~~~~~i~~~Ga~pv~v~i~~~~~~~~~~pf~gniD~e~Le~~I~~~~~~~~~~I 156 (431)
T cd00617 81 ENILFSILLKPGRTVP-SN---MHFDTTRGHIEANGAVPVDLVIDEAHDAQELIPFKGNIDVAKLEKLIDEVGAENIPYI 156 (431)
T ss_pred HHHHHHHhCCCCCEEc-cC---CcccchHHHHHhCCCEeEEEecccccccccccCCCCCcCHHHHHHHhCcccCCCccEE
Confidence 9999999999999874 33 33334445566777744444332111 2459999999999865 25666
Q ss_pred EEcCCCCC---ccc---CHHHHHHHHHHcCCEEEEEcccchhhhh------cCCCC-CC-------CCCCcEEEecCCcc
Q psy13354 171 IAGASAYS---QYI---DFERFYHIAKNINSYFMVDMAHYAGLIA------AGEYP-NP-------VPFADFITSTTHKS 230 (1342)
Q Consensus 171 v~~~s~~~---~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~------~~~~~-~~-------l~~~Divv~S~sK~ 230 (1342)
+++.++|+ .+. ++++|.++|++||++||+|+++..+... .+... ++ ....|.+++|++|.
T Consensus 157 ~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~~~na~~i~~r~~g~~~~si~ei~~e~~s~sd~~~mS~~K~ 236 (431)
T cd00617 157 VLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARFAENAYFIKEREEGYRDKSIAEIAREMFSYADGCTMSAKKD 236 (431)
T ss_pred EEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhHhhhhhhhcccccccCCCHHHHHHHhhccCCEEEEEeecC
Confidence 66666664 222 5778899999999999999997654211 11111 11 23469999999999
Q ss_pred CCCCCeeEEEEec-hhHHHHhhcc---CCc-cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 231 LRGPRGGFILMKK-KYKKIINSAV---FPG-IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 231 l~gp~GG~iv~~~-~l~~~l~~~~---~~~-~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
..++.||++++++ ++++.++... ..+ .+++.......|++.++.+... .++.++..++++++.+.|.+.|++
T Consensus 237 ~~~~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~~~r~~~A~A~gL~e~~~---~~~l~~~~~~r~~l~~~L~~~G~~ 313 (431)
T cd00617 237 GLVNIGGFLALRDDELYEEARQRVVLYEGFVTYGGMAGRDMEALAQGLREAVE---EDYLRHRVEQVRYLGDRLDEAGVP 313 (431)
T ss_pred CCCccceEEEeCcHHHHHHHHHhccccCCccccccccHHHHHHHHHHHHhccc---HHHHHHHHHHHHHHHHHHHHCCCC
Confidence 8788899999997 5888887432 112 1233333344444445544322 233455566779999999999998
Q ss_pred EeeCCCCCeEEEEEccCCC--------CCHHHHHHHHHHCCceeeeccC---CCCCCC---ccc-ccccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNKK--------ITGKIAESILESANIICNKNSI---PNDPEK---PYF-TSGIRLGSSAITTRG 370 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~~--------~~~~~~~~ll~~~GI~v~~~~~---p~~~~~---~~~-~~~lRi~~~~~~t~~ 370 (1342)
+.. |.++|++|++++... .+.+++..++++.||.+..... +..+.. ... -..+|+++. ++.
T Consensus 314 v~~-P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~p---rr~ 389 (431)
T cd00617 314 IVE-PAGGHAVFIDAREFLPHIPQEQFPAQALAAELYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIP---RRV 389 (431)
T ss_pred ccC-CCcceEEEEEhHHhcCCCCcccCcHHHHHHHHHHHcCeeEEeecceecccCCCCCcccCCccceeEEecc---ccc
Confidence 865 678899999987522 2567888999999999764211 222111 000 246888766 555
Q ss_pred cchhhHHHHH
Q psy13354 371 FSELEIIKVV 380 (1342)
Q Consensus 371 ~~e~d~~~~~ 380 (1342)
.+...+..++
T Consensus 390 ~t~~~~~~~~ 399 (431)
T cd00617 390 YTQDHMDYVA 399 (431)
T ss_pred cCHHHHHHHH
Confidence 5655554443
No 189
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=99.83 E-value=1.4e-18 Score=210.26 Aligned_cols=317 Identities=15% Similarity=0.080 Sum_probs=208.5
Q ss_pred CceeeeecCC-----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCH
Q psy13354 28 NNIELIASEN-----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~n-----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sG 98 (1342)
+.+.|..++. + .++.+.+++.+.+..... ..|+...+..++++++++++... + .+ +.+++++|+
T Consensus 32 ~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~------~~Y~~~~g~~~lr~aia~~~~~~-~~~~~~~~i~~t~G~ 104 (401)
T TIGR01264 32 PMIKLSIGDPTVFGNLPTDPEVMQAMKDSLDSGKY------NGYAPTVGALSAREAIASYYHNP-DGPIEADDVVLCSGC 104 (401)
T ss_pred CeeecCCCCCCCcCCCCCCHHHHHHHHHHHhccCC------CCCCCCCCCHHHHHHHHHHHhhc-CCCCCHHHEEECcCh
Confidence 4477776653 2 344488887776642111 12444455567777566555542 2 22 445556588
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++|+..++.+++.+||+|+++.+.++ .........|..+..++++.++++.+|++.+++.+++. ++++++++++||
T Consensus 105 ~~al~~~~~~l~~~gd~v~i~~P~y~---~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~l~~~~~~~-~~~v~~~~p~NP 180 (401)
T TIGR01264 105 SHAIEMCIAALANAGQNILVPRPGFP---LYETLAESMGIEVKLYNLLPDKSWEIDLKQLESLIDEK-TAALIVNNPSNP 180 (401)
T ss_pred HHHHHHHHHHhCCCCCEEEEeCCCCh---hHHHHHHHcCCEEEEeecCCccCCCCCHHHHHHHhccC-ceEEEEcCCCCC
Confidence 99999999999999999998775544 33445566777544444433446789999999888754 466666666666
Q ss_pred -c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----CcEEEecCCccCCCCCe---eEEEEec---
Q psy13354 179 -Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----ADFITSTTHKSLRGPRG---GFILMKK--- 243 (1342)
Q Consensus 179 -~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~Divv~S~sK~l~gp~G---G~iv~~~--- 243 (1342)
+ ..++++|+++|+++|++||+||+|....+....+.+.... ..++++||||.| +.+| ||+++++
T Consensus 181 tG~~~~~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~iv~~~~~~ 259 (401)
T TIGR01264 181 CGSVFSRQHLEEILAVAERQCLPIIADEIYGDMVFSGATFEPLASLSSTVPILSCGGLAKRW-LVPGWRLGWIIIHDRRG 259 (401)
T ss_pred CCCCCCHHHHHHHHHHHHHCCCEEEEEhhhhhhccCCcccccHHHcCCCCcEEEEccCcccC-CCccceEEEEEecCcch
Confidence 2 2268999999999999999999987654422222211111 137789999998 6666 9999874
Q ss_pred ---hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEE
Q psy13354 244 ---KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ---~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+...... ..+++.+.+.++..++.+....++++.++.+.++++++.+.|.+. |+.+. .+.+++++|+.
T Consensus 260 ~~~~~~~~~~~~~~~--~~~~~~~~q~a~~~~l~~~~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~-~p~~g~f~~~~ 336 (401)
T TIGR01264 260 ILRDIRDGLVKLSQR--ILGPCTIVQGALPSILLRTPQEYFDGTLSVLESNAMLCYGALAAVPGLRPV-MPSGAMYMMVG 336 (401)
T ss_pred hHHHHHHHHHHHhhc--cCCCCcHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhCCCCccc-CCCeeeEEEEE
Confidence 344444432221 112234455555555544223477788899999999999999987 65542 35678999999
Q ss_pred ccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 320 LRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 320 ~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.. ..+.+++..+++++||.+.++..++. .+++|++++.
T Consensus 337 ~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~~f~~------~~~iRis~~~ 381 (401)
T TIGR01264 337 IEMEHFPEFKNDVEFTERLVAEQSVFCLPGSCFEY------PGFFRVVLTV 381 (401)
T ss_pred ecccccCCCCCHHHHHHHHHHhCCEEEeCchhcCC------CCeEEEEEcC
Confidence 7531 23467778888788999998765542 3579999985
No 190
>TIGR03235 DNA_S_dndA cysteine desulfurase DndA. This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.
Probab=99.83 E-value=9.1e-19 Score=208.47 Aligned_cols=318 Identities=15% Similarity=0.176 Sum_probs=214.1
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-- 110 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-- 110 (1342)
++..++++.+++++.+.+...+ +.+++..+.......++.+.+++.+++++|.+ +.+++++|+++|+..++.++.
T Consensus 5 a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~ 82 (353)
T TIGR03235 5 NATTPIDPAVAEAMLPWLLEEF--GNPSSRTHEFGHNAKKAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARA 82 (353)
T ss_pred CCCCCCCHHHHHHHHHHHHhcC--CCCCchhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHh
Confidence 4456788889999988875433 33433222212223345566888999999987 567777688889999988875
Q ss_pred --CCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 111 --NPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 111 --~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
.+| +.|++....++++...+..+...|. +++.++.++++.+|++++++.+++ ++++++++.++++ ...|+++
T Consensus 83 ~~~~g~~~vi~~~~~~~s~~~~~~~~~~~G~--~v~~v~~~~~~~~d~~~l~~~l~~-~~~lv~~~~~~n~tG~~~~~~~ 159 (353)
T TIGR03235 83 GEQKGKKHIITSAIEHPAVLEPIRALERNGF--TVTYLPVDESGRIDVDELADAIRP-DTLLVSIMHVNNETGSIQPIRE 159 (353)
T ss_pred cccCCCCeeeEcccccHHHHHHHHHHHhcCC--EEEEEccCCCCcCCHHHHHHhCCC-CCEEEEEEcccCCceeccCHHH
Confidence 356 7788777777766555555555676 455556666788999999998875 4566665554444 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHH--Hhhcc------CCc
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKI--INSAV------FPG 256 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~--l~~~~------~~~ 256 (1342)
|.++|+++|+++++|++|+.|....+.. ...+|++++|+|||+ ||.| |+++.+++.... +.... ..+
T Consensus 160 I~~l~~~~~~~~ivD~a~~~g~~~~~~~---~~~~D~~~~s~~K~~-gp~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (353)
T TIGR03235 160 IAEVLEAHEAFFHVDAAQVVGKITVDLS---ADRIDLISCSGHKIY-GPKGIGALVIRKRGKPKAPLKPIMFGGGQERGL 235 (353)
T ss_pred HHHHHHHcCCEEEEEchhhcCCcccccc---ccCCCEEEeehhhcC-CCCceEEEEEccCcccccccCceeeCCCCcCcc
Confidence 9999999999999999999876622111 113799999999997 8988 999998864322 11100 112
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC--CeEEEEEccCCCCCHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK--SHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
..++++.+...++..++.... .+.+...+++.++++++++.|.+.|+++..++.. ..++.+.++ +.+.+.+...|
T Consensus 236 ~~gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~--~~~~~~v~~~L 312 (353)
T TIGR03235 236 RPGTLPVHLIVGMGEAAEIAR-RNAQAWEVKLRAMRNQLRDALQTLGVKLNGDPAETIPHILNFSID--GVNSEALIVNL 312 (353)
T ss_pred ccCCCChHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHhccCCeEEeCCcccccCCEEEEEeC--CcCHHHHHHHH
Confidence 235566667777766665544 4777888999999999999998889987653222 234445444 33445666666
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++ +|.+.++........ ...++|.+++..
T Consensus 313 ~~-~i~v~~g~~~~~~~~--~~~~~l~~~g~~ 341 (353)
T TIGR03235 313 RA-DAAVSTGSACSSSKY--EPSHVLQAMGLD 341 (353)
T ss_pred hC-CeEEEchhhcCCCCC--CCCHHHHHcCCC
Confidence 66 899987654433221 134567766653
No 191
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=99.83 E-value=6.2e-19 Score=215.36 Aligned_cols=284 Identities=12% Similarity=0.096 Sum_probs=194.6
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEE
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC 144 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~ 144 (1342)
|+...+..++.+.+.+++....+.++.+++++|+++|+..++.+++.|||.|++..+.|+ .....+...|. ++++
T Consensus 117 Y~~~~g~~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l~~pgd~Vlv~~P~y~---~~~~~~~~~g~--~~~~ 191 (431)
T PRK15481 117 YGDAPVSPELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAHLLPGDSVAVEDPCFL---SSINMLRYAGF--SASP 191 (431)
T ss_pred cCCcCCCHHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHhCCCCCEEEEeCCCcH---HHHHHHHHcCC--eEEe
Confidence 444455567777666665543343445666658888999999999999999997775554 44455566677 5555
Q ss_pred ecCCCCCCCCHHHHHHHHHhcCCeEEEEc-CCCCC--ccc---CHHHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCC
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNKPKLIIAG-ASAYS--QYI---DFERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPV 217 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~~~liv~~-~s~~~--~~~---~l~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l 217 (1342)
++.++++ +|++.+++++++ ++++++++ +++|| ... .+++|.++|++| +++||+||+|...... . +...+
T Consensus 192 v~~~~~g-~~~~~l~~~~~~-~~k~i~~~p~p~NPTG~~~s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~~-~-~~~~~ 267 (431)
T PRK15481 192 VSVDAEG-MQPEKLERALAQ-GARAVILTPRAHNPTGCSLSARRAAALRNLLARYPQVLVIIDDHFALLSSS-P-YHSVI 267 (431)
T ss_pred eccCCCC-CCHHHHHHHHhc-CCCEEEECCCCCCCCCccCCHHHHHHHHHHHHhcCCceEEecCchhhhccC-C-CCCCC
Confidence 5666554 899999998875 46666665 66777 222 456999999999 9999999998765331 1 12222
Q ss_pred C---CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHHHHHHHHH
Q psy13354 218 P---FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKIYQKQVVK 290 (1342)
Q Consensus 218 ~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~~~~~l~~ 290 (1342)
. ...++++||||.| | +| ||+++++++++.+......... +.+.+.+.++..++.+.. ..++++.++.+.+
T Consensus 268 ~~~~~~vi~~~SfSK~~-~-~GlRiG~~i~~~~~~~~~~~~~~~~~~-~~s~~~q~a~~~~l~~~~~~~~l~~~~~~~~~ 344 (431)
T PRK15481 268 PQTTQRWALIRSVSKAL-G-PDLRLAFVASDSATSARLRLRLNSGTQ-WVSHLLQDLVYACLTDPEYQARLAQARLFYAQ 344 (431)
T ss_pred cCCCCCEEEEeeecccc-C-CCceeEEEeCCHHHHHHHHHHHhcccc-CCCHHHHHHHHHHHhCccHHHHHHHHHHHHHH
Confidence 1 1348899999999 5 56 9999999888888653333222 233555565555554321 1246778899999
Q ss_pred HHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 291 ~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+++.+.+.|.+.|+.+. .+.+++++|++++. .+.+++..++ ++||.+.++..++.... .+++|++++...
T Consensus 345 ~r~~~~~~L~~~~~~~~-~p~gg~f~~~~l~~--~~~~~~~~l~-~~gV~v~pg~~f~~~~~---~~~iRis~~~~~ 414 (431)
T PRK15481 345 RRQKLARALQQYGIAIP-SPGDGLNLWLPLDT--DSQATALTLA-KSGWLVREGEAFGVSAP---SHGLRITLSTLN 414 (431)
T ss_pred HHHHHHHHHHHcCCccc-cCCCeEEEEEECCC--CHHHHHHHHH-HCCcEEecCCccccCCC---CCeEEEEcCCCC
Confidence 99999999998887653 35788999999875 2456666655 56999998776644321 346999998753
No 192
>PRK08363 alanine aminotransferase; Validated
Probab=99.83 E-value=1.6e-18 Score=209.76 Aligned_cols=317 Identities=15% Similarity=0.135 Sum_probs=209.2
Q ss_pred CceeeeecCC----C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHH
Q psy13354 28 NNIELIASEN----Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGS 99 (1342)
Q Consensus 28 ~~i~l~a~~n----~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs 99 (1342)
+.+.+..+.. + .++.+.+++.+.+... ...|+...+..++++++++++...+|.. +.+++++|++
T Consensus 31 ~~i~l~~g~p~~~~~~p~~~~~~~~~~~~~~~-------~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~ 103 (398)
T PRK08363 31 KVIRLNIGDPVKFDFQPPEHMKEAYCRAIKEG-------HNYYGPSEGLPELREAIVKREKRKNGVDITPDDVRVTAAVT 103 (398)
T ss_pred CeEEEeCCCCCcCCCCCCHHHHHHHHHHHHcC-------CCCCCCCCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHH
Confidence 5588887764 2 4445888887766421 1134445666788887777776665632 4555665889
Q ss_pred HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEe-cCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 100 QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICY-GLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 100 ~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~-~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+|+..++.+++++||+|+++.+.++.+ ...+...|. .++.+ +.+ +++.+|++.+++.+++ +++++++++++|
T Consensus 104 ~al~~~~~~~~~~gd~Vl~~~p~y~~~---~~~~~~~g~--~~v~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~N 177 (398)
T PRK08363 104 EALQLIFGALLDPGDEILIPGPSYPPY---TGLVKFYGG--VPVEYRTIEEEGWQPDIDDIRKKITE-KTKAIAVINPNN 177 (398)
T ss_pred HHHHHHHHHhCCCCCEEEEcCCCCcch---HHHHHHcCC--EEEEeccccccCCcCCHHHHHhhCCc-ceEEEEEECCCC
Confidence 999999999999999999877655544 334455565 44444 333 4567899999988865 345655556565
Q ss_pred C-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC--CcEEEecCCccCCCCCe---eEEEE--ec
Q psy13354 178 S-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF--ADFITSTTHKSLRGPRG---GFILM--KK 243 (1342)
Q Consensus 178 ~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~--~Divv~S~sK~l~gp~G---G~iv~--~~ 243 (1342)
| +. .++++|+++|+++|++||+|++|....+. +..... +.. ..+++.||||++ +.+| ||+++ ++
T Consensus 178 PtG~~~~~~~~~~l~~~a~~~~~~li~Deay~~~~~~-~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~~ 255 (398)
T PRK08363 178 PTGALYEKKTLKEILDIAGEHDLPVISDEIYDLMTYE-GKHVSPGSLTKDVPVIVMNGLSKVY-FATGWRLGYIYFVDPE 255 (398)
T ss_pred CCCcCcCHHHHHHHHHHHHHcCeEEEEhhhhhhhccC-CcccCHHHcCcCCcEEEEecchhcc-CCccceEEEEEEeCcH
Confidence 5 22 24999999999999999999998764432 221111 111 246689999998 5556 99997 55
Q ss_pred hhHHHHhhccCCc--cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEc
Q psy13354 244 KYKKIINSAVFPG--IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 244 ~l~~~l~~~~~~~--~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~ 320 (1342)
++++.+....... ...+++.+.+.++..++.+ ..+++++.++++.++++++.+.|.+. ++.+. .+.+++++|+.+
T Consensus 256 ~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l~~-~~~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l 333 (398)
T PRK08363 256 GKLAEVREAIDKLARIRLCPNTPAQFAAIAGLTG-PMDYLEEYMKKLKERRDYIYKRLNEIPGISTT-KPQGAFYIFPRI 333 (398)
T ss_pred HHHHHHHHHHHHHhcccccCChHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHHHHHHhcCCCCEec-CCCeEEEEEEEe
Confidence 5555544321110 1112334455555545433 23477788899999999999999886 66653 356677888787
Q ss_pred cCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 321 RNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 321 ~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.. ..+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 334 ~~~~~~~~~~~~~~~l~~~gV~v~~g~~f~~~~----~~~iRis~~~ 376 (398)
T PRK08363 334 EEGPWKDDKEFVLDVLHEAHVLFVHGSGFGEYG----AGHFRLVFLP 376 (398)
T ss_pred ccCCCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCeEEEEecC
Confidence 652 2345677788888899999876554322 3579999864
No 193
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=99.83 E-value=2.3e-18 Score=207.07 Aligned_cols=301 Identities=16% Similarity=0.095 Sum_probs=192.8
Q ss_pred CceeeeecC--CCCcHHHHHHHhHHHHhccccCCCCC-CccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 28 NNIELIASE--NYTSLAVMEAQGTLLTNKYAEGYPGK-RYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~--n~l~~~v~eal~~~l~~~~~~g~~~~-~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
..|++.+-. .++++++++|+.+... .+ +.+++ .+... .......+++++.+++++|.+++++++ ||++|+..
T Consensus 19 ~~~~~~~~~~~~p~~~~~~~a~~~~~~-~~--~~~~~~~~~~~-~~~~~~~~~l~~~lA~~~g~~~~~~~~-g~t~a~~~ 93 (387)
T PRK09331 19 EFINLDPIQRGGILTPEARKALIEYGD-GY--SVCDYCPGRLD-QIKKPPIADFHEDLAEFLGMDEARVTH-GAREGKFA 93 (387)
T ss_pred cccccChhhcCCCCCHHHHHHHHHHHh-cc--CCCcccccccc-cccChHHHHHHHHHHHHhCCCcEEEeC-CHHHHHHH
Confidence 345555543 6677779999887763 22 22211 11111 111223444666999999998776655 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc------CCeEEEEcCCCCC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN------KPKLIIAGASAYS 178 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~------~~~liv~~~s~~~ 178 (1342)
++.+++++||+|++.. .+|++....+...|..+..++.+.++++.+|++++++.+++. .+++++++.++++
T Consensus 94 al~~l~~~gd~Vlv~~---~~h~s~~~~~~~~G~~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~ 170 (387)
T PRK09331 94 VMHSLCKKGDYVVLDG---LAHYTSYVAAERAGLNVREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGN 170 (387)
T ss_pred HHHHhcCCCCEEEECC---CchHHHHHHHHHcCCEEEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCC
Confidence 9999999999999765 455555555667777444443322567889999999988753 4677776655543
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~ 255 (1342)
...|+++|+++|++||+++++|++|+.|.+.... ....+|++++|+||+++++.| |++++++++++.+.....+
T Consensus 171 tG~~~~l~~I~~la~~~g~~livD~a~~~g~~~~~~---~~~g~D~~~~s~~K~l~~~~~~G~l~~~~~~i~~~~~~~~~ 247 (387)
T PRK09331 171 YGNLADAKKVAKVAHEYGIPFLLNGAYTVGRMPVDG---KKLGADFIVGSGHKSMAASAPSGVLATTEEYADKVFRTSRK 247 (387)
T ss_pred CcccccHHHHHHHHHHcCCEEEEECCcccCCcCCCH---HHcCCCEEEeeCcccccCCCCEEEEEECHHHHhhcccccCC
Confidence 5569999999999999999999999987542110 001369999999999977666 9999999888877554322
Q ss_pred cc------ccCCc-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-CCCCeEEEEEccCC---
Q psy13354 256 GI------QGGPL-MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-GTKSHIILVDLRNK--- 323 (1342)
Q Consensus 256 ~~------~~~~~-~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~~~~~~v~i~~~~~--- 323 (1342)
+. +++.. .....++.+++..... ..+ ..++..++++++++.|.+. |++++.. +...+++.++.+..
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~aal~~~~~-~~~-~~~~~~~~~~~l~~~L~~l~g~~~~~~~~~~~~i~~~~~~~~~~~ 325 (387)
T PRK09331 248 FGVKEVELLGCTLRGAPLVTLMASFPHVVE-RVK-RWDEEVKKARWFVDELEKIEGFKQLGEKPRNHDLMKFETPSFDEI 325 (387)
T ss_pred CcccceeeeceecCchHHHHHHHHHHHHHH-HHH-HHHHHHHHHHHHHHHHhcCCCEEEeccCcCcCCeEEEeCCchhHH
Confidence 21 22111 1122323333332221 222 3556678888999999998 8988642 23355666665421
Q ss_pred ----CCCHHHHHHHHHHCCcee
Q psy13354 324 ----KITGKIAESILESANIIC 341 (1342)
Q Consensus 324 ----~~~~~~~~~ll~~~GI~v 341 (1342)
......+...|+++||.+
T Consensus 326 ~~~~~~~~~~~~~~L~~~gI~~ 347 (387)
T PRK09331 326 AKKHKRRGFFLYEELKKRGIHG 347 (387)
T ss_pred hhhccccchhHHHHHHHcCceE
Confidence 111123444445669973
No 194
>PLN02651 cysteine desulfurase
Probab=99.82 E-value=1.4e-18 Score=207.52 Aligned_cols=323 Identities=14% Similarity=0.158 Sum_probs=216.2
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-- 109 (1342)
.++..++++.+++++.+.+...+ +++.+..+.......++.+.+++.+++++|.+ +.+++++|||+|++.++.++
T Consensus 5 ~a~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~ 82 (364)
T PLN02651 5 MQATTPIDPRVLDAMLPFLIEHF--GNPHSRTHLYGWESEDAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMH 82 (364)
T ss_pred CcCCCCCCHHHHHHHHHHHHhCC--CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 35567788889999888775433 33332111112233455666888999999987 56677768999988877654
Q ss_pred --cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC-cccCHHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS-QYIDFER 185 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~-~~~~l~~ 185 (1342)
.++||+|++....|++....+..+...|..+. .++.++++.+|++++++.++++ +++++++. ++.+ ...|+++
T Consensus 83 ~~~~~g~~vl~~~~~h~s~~~~~~~~~~~g~~v~--~v~~~~~~~~d~~~l~~~i~~~-t~lv~v~~~~n~tG~~~~l~~ 159 (364)
T PLN02651 83 FYKDKKKHVITTQTEHKCVLDSCRHLQQEGFEVT--YLPVKSDGLVDLDELAAAIRPD-TALVSVMAVNNEIGVIQPVEE 159 (364)
T ss_pred hccCCCCEEEEcccccHHHHHHHHHHHhcCCEEE--EEccCCCCcCCHHHHHHhcCCC-cEEEEEECCCCCceecccHHH
Confidence 47899999888777665444544455566444 4455667889999999999764 45555544 4444 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Ccc
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGI 257 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~ 257 (1342)
|.++|+++|+++++|++|+.|...-. ... .+|++++|.|||+ ||.| |+++.+++....+..... .+.
T Consensus 160 I~~~~~~~g~~~~vD~a~~~g~~~~~----~~~~~~D~~~~s~hK~~-gp~G~g~l~v~~~~~~~l~p~~~g~~~~~~~~ 234 (364)
T PLN02651 160 IGELCREKKVLFHTDAAQAVGKIPVD----VDDLGVDLMSISGHKIY-GPKGVGALYVRRRPRVRLEPLMSGGGQERGRR 234 (364)
T ss_pred HHHHHHHcCCEEEEEcchhhCCcccC----cccCCCCEEEechhhhC-CCCceEEEEEcCCCCCCCCccccCCCccCCcc
Confidence 99999999999999999998765211 111 3799999999985 9998 999998865544433211 234
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCC-C---CeEEEEEccCCCCCHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGT-K---SHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~-~---~~~v~i~~~~~~~~~~~~~ 331 (1342)
.++++.+...++..++..... ..+...++..+.++++.+.|.+. |+++..+.. . .+++.+.+++ .+.+.+.
T Consensus 235 ~GT~~~~~~~~l~~al~~~~~-~~~~i~~~~~~l~~~l~~~l~~~~~~~~i~~~~~~~~~~~~i~~~~~~~--~~~~~~~ 311 (364)
T PLN02651 235 SGTENTPLVVGLGAACELAMK-EMDYDEKHMKALRERLLNGLRAKLGGVRVNGPRDPEKRYPGTLNLSFAY--VEGESLL 311 (364)
T ss_pred CCCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEECCCCcccCcCCEEEEEeCC--CCHHHHH
Confidence 567777788887777666554 56778889999999999999863 788776311 1 2366666653 2334444
Q ss_pred HHHHHCCceeeecc--CCCC----------CCC-cccccccccccccccccc
Q psy13354 332 SILESANIICNKNS--IPND----------PEK-PYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~--~p~~----------~~~-~~~~~~lRi~~~~~~t~~ 370 (1342)
..|.+ |.++.+. .+.. ... ....+.+|+|++.++|.+
T Consensus 312 ~~L~~--i~v~~g~~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~ 361 (364)
T PLN02651 312 MGLKE--VAVSSGSACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEE 361 (364)
T ss_pred HHhCC--EEEEchhhcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHH
Confidence 44443 7776432 1110 000 001257999999998853
No 195
>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]
Probab=99.82 E-value=7.2e-19 Score=205.89 Aligned_cols=302 Identities=15% Similarity=0.195 Sum_probs=211.7
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-CC-CceEecCCHHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-AE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-~~-~~vi~~~sGs~A~~ 103 (1342)
..+.+.+|+|+++|+ +.+++...+. .+ .-||.. ...++++ .+++++| .+ +.++..+|+.+.+.
T Consensus 23 ~~i~LssNenP~gp~~~~~~~~~~~~~-~~-~rYPd~-------~~~~l~~----a~a~~~~~~~~~~V~~gnGsde~i~ 89 (356)
T COG0079 23 GIIKLSSNENPYGPPPKVIEAIRAALD-KL-NRYPDP-------DYRELRA----ALAEYYGVVDPENVLVGNGSDELIE 89 (356)
T ss_pred cceeecCCCCCCCCCHHHHHHHHHHHH-hh-ccCCCC-------cHHHHHH----HHHHHhCCCCcceEEEcCChHHHHH
Confidence 468899999998864 7777666553 11 122221 2234444 8888999 66 34444545566889
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++++++.|||.|+++.+.++.+ .......|. +++.++..+ |.+|++.+.+.+.+ +++++++|+|||| ...
T Consensus 90 ~l~~~~~~~gd~vl~~~Ptf~~Y---~~~a~~~g~--~~~~v~~~~-~~~d~~~~~~~~~~-~~~lv~i~nPNNPTG~~~ 162 (356)
T COG0079 90 LLVRAFVEPGDTVLIPEPTFSMY---EIAAQLAGA--EVVKVPLKE-FRLDLDAILAAIRD-KTKLVFLCNPNNPTGTLL 162 (356)
T ss_pred HHHHHhhcCCCEEEEcCCChHHH---HHHHHhcCC--eEEEecccc-cccCHHHHHHhhhc-CCCEEEEeCCCCCCCCCC
Confidence 99999999999999877655544 444566677 555556666 88999999999887 7888888888888 333
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CC-cEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FA-DFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~-Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
+.++|.++++.. +.+||+||||....- ......+. .. -+++.||||.| |..| ||+++++++++.+++...
T Consensus 163 ~~~~l~~l~~~~~~~~~vVvDEAY~eF~~--~~~~~l~~~~~nlivlRTfSKa~-gLAGlRlGy~ia~~~~i~~l~~vr~ 239 (356)
T COG0079 163 PREELRALLEALPEGGLVVIDEAYIEFSP--ESSLELLKYPPNLIVLRTFSKAF-GLAGLRVGYAIANPELIAALNKVRP 239 (356)
T ss_pred CHHHHHHHHHhCCCCcEEEEeCchhhcCC--chhhhhccCCCCEEEEEecHHhh-hcchhceeeccCCHHHHHHHHHhcC
Confidence 666666666644 889999999865332 11111111 12 37889999999 8888 999999999999999888
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcE-EeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR-IVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~-~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
+|..++ +.+.++.+++.+. +++++.++.+.+.+.++.+.|...|+. +. ++.++|++++++... +..+.+.+
T Consensus 240 p~~v~~---~a~~aa~aal~~~--~~~~~~~~~~~~~r~rl~~~l~~~~~~~v~--pS~aNFvlv~~~~~~-~~~l~~~L 311 (356)
T COG0079 240 PFNVSS---PALAAAIAALRDA--DYLEESVERIREERERLYAALKALGLFGVF--PSQANFVLVRVPDAE-AAALAEAL 311 (356)
T ss_pred CCCCCH---HHHHHHHHHcccH--HHHHHHHHHHHHHHHHHHHHHHhCCCCeec--CCCCcEEEEECCCcc-HHHHHHHH
Confidence 887664 3444444444333 578889999999999999999998844 43 456899999998732 33455555
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++ +||.++.+...+. ..+++|+++...
T Consensus 312 ~~-~giivR~~~~~~~-----~~~~lRitvgt~ 338 (356)
T COG0079 312 LK-KGILVRDCSSVGL-----LPGYLRITVGTP 338 (356)
T ss_pred HH-CCEEEEeCCCCCC-----CCCeEEEEeCCH
Confidence 55 5999998744221 145799988774
No 196
>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase
Probab=99.82 E-value=3e-18 Score=209.04 Aligned_cols=325 Identities=15% Similarity=0.169 Sum_probs=215.7
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHH---
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFS--- 108 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~a--- 108 (1342)
++..+.+..+++++.+.+...+ +.+.+..+.......+..+.+++.+++++|.+ +.+++++|+|+++..++.+
T Consensus 39 a~~~~~p~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~ 116 (424)
T PLN02855 39 AATSQKPAAVLDALQDYYEEYN--SNVHRGIHALSAKATDAYELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGL 116 (424)
T ss_pred ccccCCCHHHHHHHHHHHHhcC--CCCCCccchHHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhh
Confidence 4446677779999888775332 22212111111222234456888999999984 4677777999999998876
Q ss_pred -ccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 109 -VLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 109 -l~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
.+++||+|+++..+|++.+..+. .....|..+.. ++.+.++.+|++++++.+++ ++++++++.++++ ...|++
T Consensus 117 ~~~~~gd~vl~~~~~~~s~~~~~~~~a~~~g~~v~~--v~~~~~~~~~~~~l~~~i~~-~t~lv~i~~~~n~tG~~~~~~ 193 (424)
T PLN02855 117 ANLKPGDEVILSVAEHHSNIVPWQLVAQKTGAVLKF--VGLTPDEVLDVEQLKELLSE-KTKLVATHHVSNVLGSILPVE 193 (424)
T ss_pred hcCCCcCEEEECCCccHHHHHHHHHHHHHcCCEEEE--EecCCCCCcCHHHHHHHhcc-CceEEEEeCccccccccCCHH
Confidence 36899999988877765544333 34566774444 45555566899999999976 5566666554444 555999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
+|+++|+++|+++++|++|+.|... .+... .+|++++|+||.+ ||.| |++++++++++.+....
T Consensus 194 ~I~~l~~~~g~~vivD~a~~~g~~~----~~~~~~~~d~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~p~~~g~~~~~~~ 268 (424)
T PLN02855 194 DIVHWAHAVGAKVLVDACQSVPHMP----VDVQTLGADFLVASSHKMC-GPTGIGFLWGKSDLLESMPPFLGGGEMISDV 268 (424)
T ss_pred HHHHHHHHcCCEEEEEhhhhcCCcC----CCchhcCCCEEEeeccccc-CCCccEEEEEchhhhhcCCCEecCCCceeee
Confidence 9999999999999999999776441 11111 2699999999965 8988 99999998776654321
Q ss_pred -----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC-----CCeEE
Q psy13354 254 -----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT-----KSHII 316 (1342)
Q Consensus 254 -----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~-----~~~~v 316 (1342)
..+..|+++.+..+++..++..+...+++.+.++..+.++++++.|.+. |++++.+.. ..+++
T Consensus 269 ~~~~~~~~~~~~r~e~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~~g~~i~~~~~~~~~~r~~~v 348 (424)
T PLN02855 269 FLDHSTYAPPPSRFEAGTPAIGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSVPGVRIYGPKPSEGVGRAALC 348 (424)
T ss_pred ecCccccCCChhhccCCChHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCcccccCcccEE
Confidence 1123355666667777777665555578888899999999999999886 788765321 23566
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccCCCC--CCCccccccccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSIPND--PEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~--~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.+++. ...++...|.+++||.++.+..-.. ....-..+.+|+|++.++|.
T Consensus 349 ~~~~~~~-~~~~v~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~ 402 (424)
T PLN02855 349 AFNVEGI-HPTDLSTFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTK 402 (424)
T ss_pred EEEECCc-CHHHHHHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCH
Confidence 6776542 2334555554445999986431100 00000024699999998875
No 197
>PLN02231 alanine transaminase
Probab=99.82 E-value=3.3e-18 Score=211.46 Aligned_cols=324 Identities=10% Similarity=0.050 Sum_probs=212.9
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~ 104 (1342)
+.|.+..+...+|..+++.+.+.+.+... .....|+...+..++++++++++.+..|.+ +.+++++|+++|+..
T Consensus 130 ~~i~~~~~~~~fp~~~i~~a~~~l~~~~~---~~~~~Y~~s~G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~ 206 (534)
T PLN02231 130 SLLDKSETHGLFSADAIERAWQILDQIPG---RATGAYSHSQGIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHM 206 (534)
T ss_pred ccCCCCCccccCCHHHHHHHHHHHHhcCC---ccccCcCCCCCcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHH
Confidence 44666666677777777776665542211 112346777888899998888888766643 445555588889999
Q ss_pred HHHHcc-CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhc-----CCeEEEEcCCC
Q psy13354 105 VFFSVL-NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKN-----KPKLIIAGASA 176 (1342)
Q Consensus 105 al~al~-~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~-----~~~liv~~~s~ 176 (1342)
++.+++ .+||.|+++.+.|+.+ ...+...|. ++++++++ ++|.+|++++++.+++. +++++++++++
T Consensus 207 ~~~~l~~~~gd~Vli~~P~Y~~y---~~~~~~~g~--~~v~~~l~~~~~~~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~ 281 (534)
T PLN02231 207 MMQLLIRSEKDGILCPIPQYPLY---SASIALHGG--TLVPYYLDEATGWGLEISELKKQLEDARSKGITVRALVVINPG 281 (534)
T ss_pred HHHHhccCCCCEEEEeCCCChhH---HHHHHHcCC--EEEEEecCcccCCCCCHHHHHHHHHHHhhcCCCeEEEEEeCCC
Confidence 999998 4899999887666544 444466676 45555555 35789999999988652 45666666666
Q ss_pred CC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCCC----------CC-CcEEEecCCccCCCCCe---
Q psy13354 177 YS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNPV----------PF-ADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 177 ~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~l----------~~-~Divv~S~sK~l~gp~G--- 236 (1342)
|| +...+++|+++|++||++||+||+|....+..+ .+.+.. .. .-++++|+||.+.|..|
T Consensus 282 NPTG~vls~e~l~~Iv~~a~~~~l~lI~DEvY~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGlRi 361 (534)
T PLN02231 282 NPTGQVLAEENQRDIVEFCKQEGLVLLADEVYQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGKRG 361 (534)
T ss_pred CCCCcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCccce
Confidence 66 333789999999999999999999987655322 222210 01 13667899997644444
Q ss_pred eEEEE---echhHHHHhhccCCccccCCcHHHHHHHHHHHHH------hcc---chHHHHHHHHHHHHHHHHHHHHhC-C
Q psy13354 237 GFILM---KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE------VLK---PDFKIYQKQVVKNAKILSKILDQR-G 303 (1342)
Q Consensus 237 G~iv~---~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~------~l~---~~~~~~~~~l~~~a~~l~~~L~~~-g 303 (1342)
||+++ ++++++.+..... ...+++...+.++..++.. ... .+.+.+++.+.++++.+.+.|.+. |
T Consensus 362 Gy~~~~~~~~~l~~~l~k~~~--~~~~s~~~~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~~g 439 (534)
T PLN02231 362 GYMEVTGFTSDVREQIYKVAS--VNLCSNISGQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSLEG 439 (534)
T ss_pred EEEEEecCCHHHHHHHHHHHh--hhcCCChHHHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 99986 5678887765432 1223334455554444421 001 123345678899999999999886 7
Q ss_pred cEEeeCCCCCeEEEEEcc--CC----------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 304 IRIVSGGTKSHIILVDLR--NK----------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 304 ~~~~~~~~~~~~v~i~~~--~~----------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.+. .+.+++++|.++. .. ..+..++..++++.||.+.|+..++...+ ..++|+++..
T Consensus 440 i~~~-~p~Ggfylw~~l~lp~~~~~~~~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g---~~~~Rit~~~ 509 (534)
T PLN02231 440 VTCN-KAEGAMYLFPRIHLPQKAIKAAEAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPG---TWHFRCTILP 509 (534)
T ss_pred ceec-CCCeeeEEeccccCcHHHHHHHhhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCC---CCeEEEEeCC
Confidence 7764 4677889995553 21 11223457788888999999877653222 3569998853
No 198
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=99.82 E-value=1.1e-18 Score=212.82 Aligned_cols=295 Identities=14% Similarity=0.090 Sum_probs=215.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCcee
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWF 140 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~ 140 (1342)
+|+...+..+|.+.+.+++....|.. +.+++++|+.+|+..+++.+++|||+|++ +.+++......++..|.
T Consensus 127 ~y~~~~G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l~~pGd~v~v---E~PtY~~~~~~~~~~g~-- 201 (459)
T COG1167 127 QYGPTAGLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLLLDPGDTVLV---EDPTYPGALQALEALGA-- 201 (459)
T ss_pred cCCCCCCcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHhCCCCCEEEE---cCCCcHHHHHHHHHcCC--
Confidence 45566788899998888888555654 44566647777999999999999999995 44666666667777787
Q ss_pred EEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCC-CC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC
Q psy13354 141 NSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASA-YS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP 214 (1342)
Q Consensus 141 ~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~-~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~ 214 (1342)
++++++.|++| +|+|.+++.+...+++++++.++. || +....++|+++|++||++||+|+.|+...+.....+
T Consensus 202 ~~~~vp~d~~G-~~~e~le~~~~~~~~k~~y~~P~~qNPtG~tms~~rR~~Ll~lA~~~~~~IIEDD~y~el~~~~~p~~ 280 (459)
T COG1167 202 RVIPVPVDEDG-IDPEALEEALAQWKPKAVYVTPTFQNPTGVTMSLERRKALLALAEKYDVLIIEDDYYGELRYDGPPPP 280 (459)
T ss_pred cEEecCCCCCC-CCHHHHHHHHhhcCCcEEEECCCCCCCCCCccCHHHHHHHHHHHHHcCCeEEeeCcchhhhcCCCCCC
Confidence 66666777666 899999999998889998887633 33 233578999999999999999999887655433222
Q ss_pred CCC--C--CCcEEEecCCccCCCCCe--eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH-hccchHHHHHHH
Q psy13354 215 NPV--P--FADFITSTTHKSLRGPRG--GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE-VLKPDFKIYQKQ 287 (1342)
Q Consensus 215 ~~l--~--~~Divv~S~sK~l~gp~G--G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~-~l~~~~~~~~~~ 287 (1342)
+.. + ...++++||||++ +|.- ||+++++++++.+.........++ ....+.+++.-+.+ ....+++.++..
T Consensus 281 ~l~~ld~~~rViy~gSFSK~l-~PglRlG~vv~p~~~~~~~~~~k~~~~~~~-s~~~Q~~la~~l~~G~~~~hl~~lR~~ 358 (459)
T COG1167 281 PLKALDAPGRVIYLGSFSKTL-APGLRLGYVVAPPELIEKLLRLKQAADLGP-SSLSQAALAAFLLSGHYDRHLRRLRRE 358 (459)
T ss_pred ChHhhCCCCCEEEEeeehhhc-ccccceeeeeCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 1 1358899999999 4433 999999998888876544433333 34444555444442 124477888999
Q ss_pred HHHHHHHHHHHHHhCC--cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee-ccCCCCCCCcccccccccccc
Q psy13354 288 VVKNAKILSKILDQRG--IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK-NSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 288 l~~~a~~l~~~L~~~g--~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~-~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+.++++.+.+.|.+.. ......+.++.++|+.+++..++.+++..++++ ||.+.+ +..+..... ..+++|++++
T Consensus 359 y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~~~~~l~~~a~~~-gv~i~~~g~~f~~~~~--~~~~~Rl~~s 435 (459)
T COG1167 359 YARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGIDARELLAAALEK-GVVVTPLGSAFSADGD--PRNGLRLSFS 435 (459)
T ss_pred HHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCCCHHHHHHHHHHC-CCEEEcCCccccCCCC--CCCeEEEEcC
Confidence 9999999999999864 223335677899999999987777788888776 888888 655554432 2457999999
Q ss_pred ccccc
Q psy13354 365 AITTR 369 (1342)
Q Consensus 365 ~~~t~ 369 (1342)
.....
T Consensus 436 ~~~~e 440 (459)
T COG1167 436 SPSEE 440 (459)
T ss_pred CCCHH
Confidence 87653
No 199
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=99.82 E-value=3.6e-18 Score=202.97 Aligned_cols=305 Identities=15% Similarity=0.166 Sum_probs=202.0
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
..+.+..+++.+ |+.+.+++.+.+..... ..|.. ....++++ .++++++.+ +.+++++|+++++..
T Consensus 23 ~~~~l~~~~~~~~~p~~~~~a~~~~~~~~~~------~~y~~-~~~~~lr~----~ia~~~~~~~~~i~it~G~~~~l~~ 91 (351)
T PRK14807 23 YKYKMDANETPFELPEEVIKNIQEIVKSSQV------NIYPD-PTAEKLRE----ELARYCSVVPTNIFVGNGSDEIIHL 91 (351)
T ss_pred ceeEccCCCCCCCCCHHHHHHHHHHhhcCcc------cCCCC-ccHHHHHH----HHHHHhCCCcccEEEecCHHHHHHH
Confidence 346677777654 34588887766532111 11221 22344555 777788876 555666577779999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++++|||+|+++.+.++. ........|. +++.++.++++.+|++.+++.+++.+++++++++++|| ...+
T Consensus 92 ~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~~~~~~~k~v~l~~p~NPtG~~~~ 166 (351)
T PRK14807 92 IMLAFINKGDVVIYPHPSFAM---YSVYSKIAGA--VEIPVKLKEDYTYDVGSFIKVIEKYQPKLVFLCNPNNPTGSVIE 166 (351)
T ss_pred HHHHhcCCCCEEEEeCCChHH---HHHHHHHcCC--eEEEeecCCCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCCC
Confidence 999999999999987655443 3334456666 55666666678899999999987656777776676766 4448
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCcc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
.+++.++|++++.++|+||+|... . ......... ...++++||||.+ |.+| ||+++++++++.+......+.
T Consensus 167 ~~~l~~l~~~~~~~~ivDe~y~~~-~-~~~~~~~~~~~~~vi~~~S~SK~~-~~~GlRiG~~v~~~~~~~~~~~~~~~~~ 243 (351)
T PRK14807 167 REDIIKIIEKSRGIVVVDEAYFEF-Y-GNTIVDVINEFENLIVLRTLSKAF-GLAGLRVGYAVANENILKYLNLVKSPYN 243 (351)
T ss_pred HHHHHHHHHhCCCEEEEeCcchhh-c-ccchHHHhhhCCCEEEEecchHhc-ccchhceeeeecCHHHHHHHHHccCCCC
Confidence 999999999988999999998642 2 211111121 1358889999999 7677 999999999988876433322
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.....+.++...+.. .++++..+.+.++++++.+.|.+. |+.+. +++++++|+.++. +.++... +.+
T Consensus 244 ---~~~~~q~~~~~~l~~---~~~~~~~~~~~~~r~~l~~~l~~~~g~~~~--~~~~~~~~i~~~~---~~~~~~~-l~~ 311 (351)
T PRK14807 244 ---INSLSQVIALKVLRT---GVLKERVNYILNERERLIKELSKIPGIKVY--PSKTNFILVKFKD---ADYVYQG-LLE 311 (351)
T ss_pred ---cCHHHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--cCCccEEEEEcCC---HHHHHHH-HHH
Confidence 224445544444432 255666677888888899999774 77653 3557788988863 3344444 445
Q ss_pred CCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+||.+.++.... .. .+++|++++...+
T Consensus 312 ~gV~v~~~~~~~--~~---~~~iRis~~~~~~ 338 (351)
T PRK14807 312 RGILVRDFSKVE--GL---EGALRITVSSCEA 338 (351)
T ss_pred CCEEEEECCCCC--CC---CCeEEEEcCCHHH
Confidence 699998653211 11 3579999886443
No 200
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=99.82 E-value=4e-18 Score=204.86 Aligned_cols=322 Identities=19% Similarity=0.197 Sum_probs=209.3
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHccCCCCE
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVLNPGDT 115 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~~pGD~ 115 (1342)
+.|+.+++++.+.+.. +. +.++...|..........+.+++.+++++|.+ +.+++++|+++++..++.+++++||+
T Consensus 11 ~~p~~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~gd~ 88 (376)
T TIGR01977 11 PKPDEVYEAMADFYKN-YG-GSPGRGRYRLALRASREVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGLLKEGDH 88 (376)
T ss_pred CCCHHHHHHHHHHHHh-cC-CCCCcccchHHHHHHHHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhccCCCCE
Confidence 3556799998887753 21 11111112111122244455777999999986 24666669999999999999999999
Q ss_pred EEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHH
Q psy13354 116 IMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKN 192 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~ 192 (1342)
|++....++++...+. .....|. +++.++.+.++.+|++++++.+++ ++++++++.++++ ...++++|.++|++
T Consensus 89 vl~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~~~~-~~~~v~~~~~~n~tG~~~~~~~i~~l~~~ 165 (376)
T TIGR01977 89 VITTPMEHNSVARPLECLKEQIGV--EITIVKCDNEGLISPERIKRAIKT-NTKLIVVSHASNVTGTILPIEEIGELAQE 165 (376)
T ss_pred EEECcchhhHHHHHHHHHHHHcCc--EEEEEecCCCCCcCHHHHHHhcCC-CCeEEEEECCCCCccccCCHHHHHHHHHH
Confidence 9987766655433222 2344466 444556666788999999999865 4566666555544 55599999999999
Q ss_pred cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechh-HHHHhhcc---------------CC
Q psy13354 193 INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKY-KKIINSAV---------------FP 255 (1342)
Q Consensus 193 ~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l-~~~l~~~~---------------~~ 255 (1342)
+|+++|+|++|++|....+. ....+|++++|+|||++||.| |+++.+++. +..+.... ..
T Consensus 166 ~~~~livD~a~~~g~~~~~~---~~~~~D~~~~s~~K~l~~p~g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r 242 (376)
T TIGR01977 166 NGIFFILDAAQTAGVIPIDM---TELAIDMLAFTGHKGLLGPQGTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDR 242 (376)
T ss_pred cCCEEEEEhhhccCccCCCc---hhcCCCEEEecccccccCCCCceEEEEcCCcCcCceecCCCccccccccccccchhh
Confidence 99999999999988662211 012379999999999988888 777666543 11111100 01
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-CCcEEeeCC---CCCeEEEEEccCCCCCHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-RGIRIVSGG---TKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~g~~~~~~~---~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
+..++++.+...++..++..+...+.+.+.++..++++++.+.|.+ .|+++..+. ...+++++.+++. +.+.+.
T Consensus 243 ~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~ 320 (376)
T TIGR01977 243 FESGTLNTPGIAGLNAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKVKIYGPADPANRVGVVSFTVEGI--DSEEVA 320 (376)
T ss_pred ccCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCCCccccCCeEEEEECCC--CHHHHH
Confidence 2235566677777777776666667788889999999999999986 457765421 1245677777532 344444
Q ss_pred HHHHH-CCceeeeccCCCCC----CCccccccccccccccccc
Q psy13354 332 SILES-ANIICNKNSIPNDP----EKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 332 ~ll~~-~GI~v~~~~~p~~~----~~~~~~~~lRi~~~~~~t~ 369 (1342)
..|.+ +||.+..+...... .+....+.+|++++..+|.
T Consensus 321 ~~L~~~~gi~v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~ 363 (376)
T TIGR01977 321 DILDEKFDIATRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTE 363 (376)
T ss_pred HHHhccCCEEEEcccccchHHHHHhCCCCCCeEEEecCCCCCH
Confidence 44444 49999864321100 0011235799999887664
No 201
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=99.82 E-value=2.5e-18 Score=206.13 Aligned_cols=302 Identities=16% Similarity=0.126 Sum_probs=205.2
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.|..|+|+.+ |.+++++.... .. ..|.. ....++++ .+++++|.+ +.+++++|+++++..
T Consensus 53 ~~i~l~~n~~p~~~~~~v~~a~~~~~---~~------~~Yp~-~~~~~lr~----~ia~~~~~~~~~I~~t~Ga~~~i~~ 118 (380)
T PLN03026 53 DIVKLDANENPYGPPPEVLEALGNMK---FP------YVYPD-PESRRLRA----ALAEDSGLESENILVGCGADELIDL 118 (380)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHhhH---hh------ccCCC-CCHHHHHH----HHHHHhCcChhhEEEcCCHHHHHHH
Confidence 5588888876643 34777764321 10 11221 22344555 788888876 556666577889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++.+||+|+++++.++. +.......|. +++.++.++++.+|++++++.+...+++++++++++|| ...+
T Consensus 119 ~~~~~~~~gd~Vlv~~P~y~~---y~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~~~~~~~~~v~l~~P~NPTG~~~~ 193 (380)
T PLN03026 119 LMRCVLDPGDKIIDCPPTFGM---YVFDAAVNGA--EVIKVPRTPDFSLDVPRIVEAVETHKPKLLFLTSPNNPDGSIIS 193 (380)
T ss_pred HHHHhcCCCCEEEEcCCChHH---HHHHHHHcCC--EEEEeecCCCCCcCHHHHHHHHhccCCcEEEEeCCCCCCCCCCC
Confidence 999999999999987755543 3334455676 45555666678899999999885456777777777777 4448
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCcc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
.+++.++++.. ++||+||+|...... +......+ ...++++||||.+ |++| ||+++++++++.+.....++.
T Consensus 194 ~~~l~~l~~~~-~~vi~DeaY~~~~~~-~~~~~~~~~~~~viv~~SfSK~~-glaGlRiGy~~~~~~~i~~l~~~~~~~~ 270 (380)
T PLN03026 194 DDDLLKILELP-ILVVLDEAYIEFSTQ-ESRMKWVKKYDNLIVLRTFSKRA-GLAGLRVGYGAFPLSIIEYLWRAKQPYN 270 (380)
T ss_pred HHHHHHHHhcC-CEEEEECcchhhcCC-cchHHHHHhCCCEEEEecchHhh-cCccccceeeecCHHHHHHHHHhcCCCC
Confidence 99999999864 999999998653321 11111111 1358899999999 7788 999999999988876544433
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc-EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI-RIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~-~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.+.+.+.++..++.+ . +++++.++.+.++++++.+.|++.++ .+ .+.+++++|+.++....+.++...++ +
T Consensus 271 ---~~~~~q~aa~~aL~~-~-~~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~p~~~~f~~~~~~~~~~~~~~~~~l~-~ 342 (380)
T PLN03026 271 ---VSVAAEVAACAALSN-P-KYLEDVKNALVEERERLFGLLKEVPFLEP--YPSDANFILCRVTSGRDAKKLKEDLA-K 342 (380)
T ss_pred ---CCHHHHHHHHHHhhC-H-HHHHHHHHHHHHHHHHHHHHHHHCCCCeE--CCCCCeEEEEECCCCCCHHHHHHHHH-H
Confidence 234455555545432 2 46777888899999999999998764 43 35678899999875333456666666 5
Q ss_pred CCceeeeccCCCCCCCccccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+||.+.++..++ ..+++|++++.
T Consensus 343 ~gI~v~~~~~~~------~~~~lRis~~~ 365 (380)
T PLN03026 343 MGVMVRHYNSKE------LKGYIRVSVGK 365 (380)
T ss_pred CCeEEEECCCCC------CCCEEEEecCC
Confidence 699998753321 14579999884
No 202
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=99.82 E-value=2.5e-18 Score=204.90 Aligned_cols=303 Identities=15% Similarity=0.152 Sum_probs=204.0
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~ 103 (1342)
+.+.+..++|.+ ++.+++++.+.+......+|+ . .+..++++ .+++++|.+ ..+++++|+++++.
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~------~-~~~~~lr~----~ia~~~~~~~~~~I~~t~G~~~~i~ 95 (356)
T PRK04870 27 GMVKLDAMENPYRLPAELRAELGERLAEVALNRYP------D-PRAAALKA----ALRAAMGVPAGADVLLGNGSDELIQ 95 (356)
T ss_pred CceeCcCCCCCCCCCHHHHHHHHHHhhccccccCC------C-CCHHHHHH----HHHHHhCcCCCCcEEEcCCHHHHHH
Confidence 567788888764 444889988776421112222 2 22345555 777788865 25666656677999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|+++.+ ++..........|. ++++++.++++.+|++.+++.+.+.+++++++++++|| ...
T Consensus 96 ~~~~~~~~~gd~vlv~~P---~y~~~~~~~~~~g~--~~~~i~~~~~~~~d~~~l~~~~~~~~~~~v~l~~p~NPtG~~~ 170 (356)
T PRK04870 96 LLALACAKPGATVLAPEP---GFVMYRMSAKLAGL--EFVGVPLTADFTLDLPAMLAAIAEHRPALVFLAYPNNPTGNLF 170 (356)
T ss_pred HHHHHhcCCCCEEEECCC---CHHHHHHHHHHcCC--EEEEecCCCCCCCCHHHHHHHhhcCCCCEEEEcCCCCCCCCCC
Confidence 999999999999997664 44444555566777 56666777778899999999987667788887777777 333
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+.+++.++++..++++|+||+|..... ......+.. ..+++.|+|| + +.+| ||+++++++++.+.....++
T Consensus 171 ~~~~~~~i~~~~~~~ii~De~y~~~~~--~~~~~~~~~~~~vi~~~S~SK-~-~~~GlRiG~~i~~~~~i~~~~~~~~~~ 246 (356)
T PRK04870 171 DDADVERIIEAAPGLVVVDEAYQPFAG--DSWLPRLARFPNLLVMRTVSK-L-GLAGLRLGYLAGHPAWIAELDKVRPPY 246 (356)
T ss_pred CHHHHHHHHHHCCCEEEEECCchhhcC--cchHHHHhhCCCEEEEecchh-h-hhHHHhhhhhhCCHHHHHHHHHccCCC
Confidence 677777776666889999999864321 111111111 2478999999 7 6767 99999999988887654333
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
. .+.+.+.++..++. .. +.+++..+++.++++++.+.|.+. |+.+. +.+++++|+.++ .+.+ +...++
T Consensus 247 ~---~~~~~q~~a~~~l~-~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~---~~~~-~~~~l~ 315 (356)
T PRK04870 247 N---VNVLTQATALFALE-HV-DVLDAQAAQLRAERTRLAAALAALPGVTVF--PSAANFILVRVP---DAAA-VFDGLK 315 (356)
T ss_pred c---CCHHHHHHHHHHHh-CH-HHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCeEEEEECC---CHHH-HHHHHH
Confidence 2 22344444443333 22 256677888899999999999886 77652 456778999876 2334 445566
Q ss_pred HCCceeeeccCCCCCCCccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++||.+.+...++.. ..+++|++++.
T Consensus 316 ~~gI~v~~~~~f~~~----~~~~iRis~~~ 341 (356)
T PRK04870 316 TRGVLVKNLSGMHPL----LANCLRVTVGT 341 (356)
T ss_pred HCCEEEEECCCCCCC----CCCeEEEeCCC
Confidence 779999987554321 14679999885
No 203
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=99.82 E-value=1.4e-18 Score=207.84 Aligned_cols=284 Identities=17% Similarity=0.197 Sum_probs=200.8
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhC--CC-C-ceEecCCHHH-HHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCC
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFN--AE-A-ANVQPHSGSQ-ANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSG 137 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g--~~-~-~vi~~~sGs~-A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g 137 (1342)
.|+...+..++++++++++.+..| .+ + .++++ +|+. ++..++..+ ..+||.|++..+.+ ......++..|
T Consensus 39 ~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~-~G~~~~~~~~~~~~~~~~~~~vlv~~P~y---~~~~~~~~~~g 114 (363)
T PF00155_consen 39 GYPPPQGYPELREAIADFLGRRYGVPVDPEANILVT-SGAQAALFLLLRLLKINPGDTVLVPDPCY---PSYIEAARLLG 114 (363)
T ss_dssp SSTCTTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEE-SHHHHHHHHHHHHHHSSTTSEEEEEESSS---THHHHHHHHTT
T ss_pred cCCCchhhHHHHHHHHHHhhhccCcccccceEEEEe-cccccchhhhhhcccccccccceecCCcc---ccccccccccC
Confidence 355566778888866555553333 22 3 56666 6655 555666666 67999999877544 44555667778
Q ss_pred ceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhh
Q psy13354 138 KWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGL 207 (1342)
Q Consensus 138 ~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~ 207 (1342)
..+..+++....++.+|++++++.+++. ++++++++++++| ...++++|+++|++||++||+||+|....
T Consensus 115 ~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~ii~De~y~~~~ 194 (363)
T PF00155_consen 115 AEVIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVLSLEELRELAELAREYNIIIIVDEAYSDLI 194 (363)
T ss_dssp SEEEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB--HHHHHHHHHHHHHTTSEEEEEETTTTGB
T ss_pred ceeeeccccccccccccccccccccccccccccccceeeecccccccccccccccccchhhhhcccccceeeeeceeccc
Confidence 8655665544577889999999999874 4567777777777 22256777777999999999999998766
Q ss_pred hhcCCCC---CCCC-CC-cEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc--
Q psy13354 208 IAAGEYP---NPVP-FA-DFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-- 277 (1342)
Q Consensus 208 ~~~~~~~---~~l~-~~-Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-- 277 (1342)
+....+. ...+ .. .+++.|+||.+ |..| ||+++++++++.+......+.. ..+.+.++...+....
T Consensus 195 ~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRvG~i~~~~~~~~~l~~~~~~~~~---~~~~~~~~~~~l~~~~~~ 270 (363)
T PF00155_consen 195 FGDPDFGPIRSLLDEDDNVIVVGSLSKSF-GLPGLRVGYIVAPPELIERLRRFQRSGLS---SSPMQAAAAAALSDPELV 270 (363)
T ss_dssp SSSSHTHHHHGHHTTTSTEEEEEESTTTT-TSGGGTEEEEEEEHHHHHHHHHHHHHTTS---SHHHHHHHHHHHHHHHHH
T ss_pred cCCCccCcccccccccccceeeeeccccc-cccccccccccchhhhhhhhhhccccccc---cchhhHHHHHhhhccccc
Confidence 5432110 1111 12 48899999999 7777 9999999998888765444333 2444444444443332
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccc
Q psy13354 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTS 357 (1342)
Q Consensus 278 ~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~ 357 (1342)
..+.++.++++.++++++.+.|.+.|+.+..+ .+++++|+.+... ++.++.+.++++.||.+.++..|+.+ +
T Consensus 271 ~~~~~~~~~~l~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~-~~~~l~~~L~~~~gi~v~pg~~~~~~------~ 342 (363)
T PF00155_consen 271 EKWLEELRERLRENRDLLREALEEIGITVLPP-EAGFFLWVRLDPN-DAEELAQELLEEYGILVRPGSYFGVP------G 342 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSEEEHH-SBSSEEEEEESHH-HHHHHHHHHHHHHTEEEEEGGGGTST------T
T ss_pred ccccccchhhHHHHHHHHHHHHHHhhhheeec-cCccEEEEEcccc-hHHHHHHHHHHhCCEEEEecCCCCCC------C
Confidence 12778889999999999999999999998663 4778888887654 45688888888889999998887762 4
Q ss_pred cccccc
Q psy13354 358 GIRLGS 363 (1342)
Q Consensus 358 ~lRi~~ 363 (1342)
++|+++
T Consensus 343 ~iRi~~ 348 (363)
T PF00155_consen 343 YIRISL 348 (363)
T ss_dssp EEEEEG
T ss_pred EEEEEe
Confidence 699999
No 204
>PRK10534 L-threonine aldolase; Provisional
Probab=99.82 E-value=7.6e-19 Score=207.40 Aligned_cols=291 Identities=17% Similarity=0.180 Sum_probs=184.0
Q ss_pred eeeeecCCCCcH-HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH
Q psy13354 30 IELIASENYTSL-AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 30 i~l~a~~n~l~~-~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a 108 (1342)
+.+.+++|+.++ .+.+++.+.... ...|++.+...+|++ .+++++|.+.+++++ ||++++..++.+
T Consensus 2 ~~~~~~~~~~p~~~~~~a~~~~~~~--------~~~Y~~~~~~~~L~~----~la~~~g~~~~~v~~-~g~~a~~~~l~~ 68 (333)
T PRK10534 2 IDLRSDTVTRPSRAMLEAMMAAPVG--------DDVYGDDPTVNALQD----YAAELSGKEAALFLP-TGTQANLVALLS 68 (333)
T ss_pred cccccccCCCCCHHHHHHHHhccCC--------CcccCCCHHHHHHHH----HHHHHhCCCeEEEeC-chHHHHHHHHHH
Confidence 456677766544 487886553321 122444555667777 888899998887777 899899988888
Q ss_pred ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCCcccC-
Q psy13354 109 VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYSQYID- 182 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~~~~~- 182 (1342)
++.|||+|+++...+...+..... ...+ +...++++.+++|.+|+++++++++++ +++++++++++++...+
T Consensus 69 ~~~~gd~vi~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~lv~l~np~~G~v~~~ 146 (333)
T PRK10534 69 HCERGEEYIVGQAAHNYLYEAGGA-AVLG-SIQPQPIDAAADGTLPLDKVAAKIKPDDIHFARTRLLSLENTHNGKVLPR 146 (333)
T ss_pred hcCCCCeeEEechhhhhHhcCCch-HHhc-CceEEeecCCCCCCCCHHHHHHhhcccCcCcccceEEEEecCCCCeecCH
Confidence 999999999655333211111101 1222 135566666778899999999988653 45777777666664444
Q ss_pred --HHHHHHHHHHcCCEEEEEcccchhhhhc-CCCC-CCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccc
Q psy13354 183 --FERFYHIAKNINSYFMVDMAHYAGLIAA-GEYP-NPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 183 --l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~-~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
+++|+++|++||++|++||+|.++.... +... ......|.++.||||.++.+.|||+++++++++.++.....+..
T Consensus 147 ~~l~~i~~~~~~~~~~lvvDEA~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~~G~~~~~~~~~i~~~~~~~~~~~~ 226 (333)
T PRK10534 147 EYLKQAWEFTRERNLALHVDGARIFNAVVAYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGNRDYIKRARRWRKMTGG 226 (333)
T ss_pred HHHHHHHHHHHHcCCeEEeeHHHHHHHHHHcCCCHHHHHhcCCEEEEEeEcCCCCcccceEEcCHHHHHHHHHHHHHhCC
Confidence 5666789999999999999986533211 1111 01112365666899999545566899999998888764433321
Q ss_pred cCCcH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHC
Q psy13354 259 GGPLM-HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337 (1342)
Q Consensus 259 ~~~~~-~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~ 337 (1342)
+.... +.++++..++ + ...+..++..++++++.+.|.+.|+++.. +.++++|++++.. +.+.+.++|.++
T Consensus 227 ~~~~~~~~~a~~~~~l-~----~~~~~~~~~~~~r~~l~~~L~~~g~~~~~--~~~nfv~~~~~~~--~~~~~~~~l~~~ 297 (333)
T PRK10534 227 GMRQAGILAAAGLYAL-K----HNVARLQEDHDNAAWLAEQLREAGADVMR--QDTNMLFVRVGEE--QAAALGEYMRER 297 (333)
T ss_pred chhhHHHHHHHHHHHH-H----hhHHHHHHHHHHHHHHHHHHHhCCCccCC--CCceEEEEECCch--hHHHHHHHHHHc
Confidence 11111 1222222222 2 11234445566788999999999988643 4688999998742 234456677777
Q ss_pred Cceeeec
Q psy13354 338 NIICNKN 344 (1342)
Q Consensus 338 GI~v~~~ 344 (1342)
||.+.++
T Consensus 298 gi~v~~~ 304 (333)
T PRK10534 298 NVLINAS 304 (333)
T ss_pred CeeecCC
Confidence 9999753
No 205
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=99.81 E-value=2.1e-18 Score=209.82 Aligned_cols=323 Identities=15% Similarity=0.118 Sum_probs=213.1
Q ss_pred ceeeeecCCCCcHH-HHHHHhHHHHh-----ccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC----C-CceEecCC
Q psy13354 29 NIELIASENYTSLA-VMEAQGTLLTN-----KYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA----E-AANVQPHS 97 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-v~eal~~~l~~-----~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~----~-~~vi~~~s 97 (1342)
.|.+...||.+... +.+.+...... .+......-.+|....+...|++++++.+.+++|. + +.+++++|
T Consensus 49 ~i~l~~aeN~l~~d~l~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~G~~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G 128 (447)
T PLN02607 49 VIQMGLAENQVSFDLLEEYLKQHPEASSWGGKGAPGFRENALFQDYHGLKSFRQAMASFMEQIRGGKARFDPDRIVLTAG 128 (447)
T ss_pred eEEEechhhhhhHHHHHHHHHhCchhhccccccccccchhhccCCCcchHHHHHHHHHHHHHhcCCCCCcCHHHeEEcCC
Confidence 47888888887765 33333322210 00001111234555667789999899998887662 2 44556658
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecCC--CCCCCCHHHHHHHHHh-----cCCeE
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGLN--KKEKIDYKKVEYLAKK-----NKPKL 169 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~-----~~~~l 169 (1342)
+++|+..++.+++.|||.|+++.+.|+++.. .+. ..|+ ++++++.+ +++.+|++.+++++.+ .+.++
T Consensus 129 ~t~al~~l~~~l~~pGD~Vlv~~P~Y~~f~~---~~~~~~g~--~vv~v~~~~~~~f~~~~~~le~a~~~a~~~~~~vk~ 203 (447)
T PLN02607 129 ATAANELLTFILADPGDALLVPTPYYPGFDR---DLRWRTGV--KIVPIHCDSSNNFQVTPQALEAAYQEAEAANIRVRG 203 (447)
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCCcchHH---HHHhcCCc--EEEEEeCCCCCCCcCCHHHHHHHHHHHHHhCCCeeE
Confidence 8889999999999999999988877766532 222 3455 55555554 4567899999998864 35566
Q ss_pred EEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----------CCCcEEEecCCccCCC
Q psy13354 170 IIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----------PFADFITSTTHKSLRG 233 (1342)
Q Consensus 170 iv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----------~~~Divv~S~sK~l~g 233 (1342)
+++++|+|| ....+++|+++|++||++||+||+|+...+....+.+.. ...-+++.|+||.| |
T Consensus 204 lll~nP~NPtG~~~s~e~l~~l~~~~~~~~i~lI~DEiYa~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~f-g 282 (447)
T PLN02607 204 VLITNPSNPLGATVQRSVLEDILDFVVRKNIHLVSDEIYSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDL-G 282 (447)
T ss_pred EEEeCCCCCcCcccCHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcC-C
Confidence 667777777 233589999999999999999999986555332222211 11236788999999 6
Q ss_pred CCe---eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 234 PRG---GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE--VLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 234 p~G---G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~--~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
..| ||+++ ++++...+.... .+ +..+++.+.+++..+.+ ....+++..++++.++++.+.+.|++.|+++.
T Consensus 283 ~~GlRvG~ivs~n~~l~~~~~~~~-~~--~~~s~~~q~~~~~~L~d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~gi~~~ 359 (447)
T PLN02607 283 LPGFRVGTIYSYNDKVVTTARRMS-SF--TLVSSQTQHLLASMLSDEEFTENYIRTNRERLRKRYEMIVQGLRRAGIECL 359 (447)
T ss_pred CCcceEEEEEEcCHHHHHHHHHHh-hc--CCCCHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 667 99998 556766665432 11 12223444444333322 11224566778889999999999999888754
Q ss_pred eCCCCCeEEEEEccCCC-----C-CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKK-----I-TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~-----~-~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. +.+++++|++++... . ..+++..+++++||.+.|+..++... ++++|++++.
T Consensus 360 ~-~~ag~fvw~~L~~~~~~~~~~~e~~l~~~ll~~~gV~v~pG~~f~~~~----~g~fRi~fa~ 418 (447)
T PLN02607 360 K-GNAGLFCWMNLSPLLETPTREGELALWDSILREVKLNISPGSSCHCSE----PGWFRVCFAN 418 (447)
T ss_pred c-CCeeEEEEEEchHhhcCCCchhHHHHHHHHHHhCCEEEcCccccCCCC----CCEEEEEecc
Confidence 3 567899999986421 1 13566678888899999876654432 4689999986
No 206
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=99.81 E-value=1.1e-17 Score=199.22 Aligned_cols=309 Identities=14% Similarity=0.108 Sum_probs=205.1
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHHHHHHH
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~~al~a 108 (1342)
+.+++..+++.+.+++...+. .+ .....++.+.+++.+++++|.+. .+++++||++++..++.+
T Consensus 3 ~~p~p~~~~~~~~~~~~~~~~-~~------------~~~~~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~ 69 (355)
T TIGR03301 3 LTPGPLSTSATVRDAMLVDWC-HW------------DSEFNDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGS 69 (355)
T ss_pred CcCCCCCCCHHHHHHhhhhcc-CC------------CHHHHHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHh
Confidence 567777788888888776321 11 11123556668889999999873 455666999999999999
Q ss_pred ccCCCCEEEEeecc-CCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEEEEcCCCCC--cccCHH
Q psy13354 109 VLNPGDTIMGMSLQ-EGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~-~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~liv~~~s~~~--~~~~l~ 184 (1342)
++.+||++++.... ++.. ........|..+ +.++.++++.+|++++++.+++++ .++++++.++++ ...+++
T Consensus 70 ~~~~~~~vi~~~~~~~~~~--~~~~a~~~g~~~--~~i~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~~G~~~~~~ 145 (355)
T TIGR03301 70 LVPRDGKLLVLINGAYGER--LAKICEYLGIPH--TDLNFSEYEPPDLNRIEEALAADPDITHVATVHHETTTGILNPLE 145 (355)
T ss_pred ccCCCCeEEEECCCchhhH--HHHHHHHcCCce--EEEecCCCCCCCHHHHHHHHHhCCCceEEEEEecCCcccchhHHH
Confidence 99889987764422 2221 223345567644 444555567889999999987642 334444333333 455899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCc------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPG------ 256 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~------ 256 (1342)
+|+++|++||+++|+|++|++|... ..... ..|++++|+|||++|+.| |+++++++.++.+.....++
T Consensus 146 ~i~~l~~~~~~~livD~~~s~g~~~----~~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (355)
T TIGR03301 146 AIAKVARSHGAVLIVDAMSSFGAIP----IDIEELDVDALIASANKCLEGVPGFGFVIARRDLLEASAGNARSLYLDLYD 221 (355)
T ss_pred HHHHHHHHcCCEEEEEeccccCCcc----cchhhcCccEEEecCCcccccCCceeEEEECHHHHHHhhCCCCCceeeHHH
Confidence 9999999999999999998876431 11111 368999999999978888 99999998887765211111
Q ss_pred ----------cccCCcHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-C-CeEEEEEccCC
Q psy13354 257 ----------IQGGPLMHVIAAKAVAFKEVLKPD-FKIYQKQVVKNAKILSKILDQRGIRIVSGGT-K-SHIILVDLRNK 323 (1342)
Q Consensus 257 ----------~~~~~~~~~~~Aaa~al~~~l~~~-~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~-~~~v~i~~~~~ 323 (1342)
...+++.+...++..++.....++ +++..+++.++++++.+.|.+.|+++..++. . ..++++.++..
T Consensus 222 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 301 (355)
T TIGR03301 222 QWAYMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQPLLPERWQSPIIVSFLYPDD 301 (355)
T ss_pred HHHHhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCeeecCCCCCCCcEEEEECCCC
Confidence 112344555566666666554444 7778889999999999999998987654322 2 23567777642
Q ss_pred C-CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 324 K-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 324 ~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
. .+.+.+.+.+.++||.+.+...+. .+++|+++...++
T Consensus 302 ~~~~~~~~~~~l~~~gi~i~~~~~~~-------~~~iRis~~~~~~ 340 (355)
T TIGR03301 302 PDFDFDDFYQELKERGFVIYPGKLTL-------ADTFRIGTIGEID 340 (355)
T ss_pred CcchHHHHHHHHHHCCEEEECCcccc-------ccEEEEecCCCCC
Confidence 1 232344444555699998653221 2469999877655
No 207
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=99.81 E-value=5.7e-18 Score=201.70 Aligned_cols=300 Identities=14% Similarity=0.116 Sum_probs=199.5
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.+..+++..+ +.+.+++.+.+.... ..|+ .. +..++++ .++++++.+ +.+++++|+++|+..
T Consensus 25 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~~-~~y~------~~-~~~~lr~----aia~~~~~~~~~I~it~G~~~al~~ 92 (353)
T PRK05387 25 KLIKLNTNENPYPPSPKVLEAIRAALGDDL-RLYP------DP-NADALRQ----AIAAYYGLDPEQVFVGNGSDEVLAH 92 (353)
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHhhhhh-hcCC------CC-cHHHHHH----HHHHHhCCCHHHEEEcCCHHHHHHH
Confidence 5588888887664 458888777654211 1222 11 2235555 777788876 456666588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++.|||+|+++.+.++.+ .......|. +++.++.++++.+|++++++ . .+++++++++|| ...+
T Consensus 93 ~~~~l~~~gd~vlv~~P~y~~~---~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~----~-~~~v~~~~P~NPtG~~~~ 162 (353)
T PRK05387 93 AFLAFFNHDRPLLFPDITYSFY---PVYAGLYGI--PYEEIPLDDDFSIDVEDYLR----P-NGGIIFPNPNAPTGIALP 162 (353)
T ss_pred HHHHhcCCCCEEEEeCCCHHHH---HHHHHHcCC--EEEEeecCCCCCCCHHHHHh----c-CCEEEEeCCCCCCCCCCC
Confidence 9999999999999877555333 333456676 45555666678899998863 2 345555566666 4448
Q ss_pred HHHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 183 FERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 183 l~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
.+++.++++.+ +++||+||+|.. +.........+ ...++++|+||.+ |.+| ||+++++++++.+......+
T Consensus 163 ~~~~~~l~~~~~~~~livDe~y~~--~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~GlR~G~~~~~~~~~~~l~~~~~~~ 239 (353)
T PRK05387 163 LAEIERILAANPDSVVVIDEAYVD--FGGESAIPLIDRYPNLLVVQTFSKSR-SLAGLRVGFAIGHPELIEALNRVKNSF 239 (353)
T ss_pred HHHHHHHHHhCCCcEEEEeCcccc--cCCcchHHHHhhCCCEEEEEehhHhh-cchhhhceeeecCHHHHHHHHHhhccC
Confidence 88888888876 999999999853 22111111111 1358899999999 6666 99999999988887654332
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
...+.+.+.+.++..++.+ .+++++.++++.++++++.+.|.+.|+.+. +.+++++|+.++. ..+.++.+.+ .+
T Consensus 240 ~~~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~-~~~~~~~~~l-~~ 313 (353)
T PRK05387 240 NSYPLDRLAQAGAIAAIED--EAYFEETRAKVIATRERLVEELEALGFEVL--PSKANFVFARHPS-HDAAELAAKL-RE 313 (353)
T ss_pred CCCCcCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeEC--CCcCcEEEEECCC-CCHHHHHHHH-HH
Confidence 2223345555555444432 235677788899999999999999888753 3567788988763 2345566665 45
Q ss_pred CCceeeeccCCCCCCCcccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+||.+..+..+. . .+++|++++
T Consensus 314 ~gi~v~~~~~~~---~---~~~iRis~~ 335 (353)
T PRK05387 314 RGIIVRHFNKPR---I---DQFLRITIG 335 (353)
T ss_pred CCEEEEECCCCC---C---CCeEEEEeC
Confidence 699997543221 1 357999987
No 208
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=99.81 E-value=1.9e-17 Score=198.36 Aligned_cols=309 Identities=15% Similarity=0.099 Sum_probs=205.8
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al 106 (1342)
..+.+++...++.+++++...+. .+ .+...+..+.+++.+++++|.+ ..+++++||+.|+..++
T Consensus 7 ~~~~pgP~~~~~~~~~a~~~~~~-~~------------~~~~~~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~ 73 (368)
T PRK13479 7 LLLTPGPLTTSRTVREAMLRDWG-SW------------DDDFNALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAI 73 (368)
T ss_pred eeecCCCCCCCHHHHHHhCCCCC-CC------------ChHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHH
Confidence 34778888888888888665431 10 1112245666888999999985 34657779999999999
Q ss_pred HHccCCCCEEEEeeccCCccchh--hHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEEEEcCCCC-C-ccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTH--GMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLIIAGASAY-S-QYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~--~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~liv~~~s~~-~-~~~ 181 (1342)
.++..+||.|++.... ++.. .......|+.+..+ +.++++.+|++++++.+++++ .++++++.+++ + ...
T Consensus 74 ~~l~~~~~~vlv~~~~---~~~~~~~~~~~~~g~~~~~i--~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~~~tG~~~ 148 (368)
T PRK13479 74 GSLVPRDGKVLVPDNG---AYGARIAQIAEYLGIAHVVL--DTGEDEPPDAAEVEAALAADPRITHVALVHCETTTGILN 148 (368)
T ss_pred HhccCCCCeEEEEeCC---chHHHHHHHHHHcCCcEEEE--ECCCCCCCCHHHHHHHHHhCCCCcEEEEEcccCcccccc
Confidence 9999999999876532 2222 24456677755554 555567789999999887542 34454544443 3 445
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCcc--
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGI-- 257 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~-- 257 (1342)
|+++|.++|+++|+++|+|++|++|... ..... .+|++++|+|||+.||.| ||+++++++++.+.....++.
T Consensus 149 ~~~~i~~l~~~~~~~livDa~~~~g~~~----~~~~~~~~d~~v~s~~K~l~g~~G~G~l~~~~~~~~~~~~~~~~~~~~ 224 (368)
T PRK13479 149 PLDEIAAVAKRHGKRLIVDAMSSFGAIP----IDIAELGIDALISSANKCIEGVPGFGFVIARRSELEACKGNSRSLSLD 224 (368)
T ss_pred CHHHHHHHHHHcCCEEEEEcccccCCcc----ccccccCceEEEecCccccccCCCceEEEECHHHHHHhhcCCCCeeec
Confidence 9999999999999999999988766431 11111 368999999999988999 999999988777654322211
Q ss_pred --------------ccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-CC-eEEEEEc
Q psy13354 258 --------------QGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGGT-KS-HIILVDL 320 (1342)
Q Consensus 258 --------------~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~~-~~v~i~~ 320 (1342)
..+++.+...++..++...... ++++..+++.++++++.+.|.+.|+++..++. .. .++.+.+
T Consensus 225 ~~~~~~~~~~~~~~~~t~~~~~~~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 304 (368)
T PRK13479 225 LYDQWAYMEKTGQWRFTPPTHVVAAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEPLLDAEIQSPIIVTFHA 304 (368)
T ss_pred HHHHHhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcccCCchhcCceEEEEEC
Confidence 0144555666666666555433 46777889999999999999999987654211 12 2233444
Q ss_pred cCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 321 RNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 321 ~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.. .+..++...+. ++||.+.++..+. ...+|++....++
T Consensus 305 ~~~~~~~~~~l~~~L~-~~gi~v~~g~~~~-------~~~iRis~~~~~t 346 (368)
T PRK13479 305 PADPAYDFKEFYERLK-EQGFVIYPGKLTQ-------VDTFRIGCIGDVD 346 (368)
T ss_pred CCCCCcCHHHHHHHHH-HCCEEEecCCCCC-------CCEEEEecCCCCC
Confidence 432 22344555554 5599997652221 2468998755544
No 209
>PRK09275 aspartate aminotransferase; Provisional
Probab=99.81 E-value=1.4e-18 Score=211.38 Aligned_cols=312 Identities=13% Similarity=0.094 Sum_probs=205.5
Q ss_pred ceeeeecC-CCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH-HHhCC------CCceEecCCHH
Q psy13354 29 NIELIASE-NYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK-KIFNA------EAANVQPHSGS 99 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la-~~~g~------~~~vi~~~sGs 99 (1342)
.+++..++ ++.+|+ +.+ +.+++.. . .|+...+..++.+++.+.+. +..+. +..++.++||+
T Consensus 102 ~i~l~~g~p~~~~~~~v~e-~~~~~~~---~------~Y~~~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~ 171 (527)
T PRK09275 102 AVSYVRDQLGFDADEFVYE-LVDGIIG---D------NYPVPDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGT 171 (527)
T ss_pred HHhhcCCCCCCCCCHHHHH-HHHHHhc---C------CCCCCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHH
Confidence 36666666 444444 555 5555531 1 25556666788887777443 33221 12455665889
Q ss_pred HHHHHHHHH-----ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEE
Q psy13354 100 QANQAVFFS-----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIA 172 (1342)
Q Consensus 100 ~A~~~al~a-----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~ 172 (1342)
+|+..++.+ +++|||+|+++.+.++. +...+...|.+.++++++.+ ++|.+|++++++++++ +++++++
T Consensus 172 ~al~~~~~aL~~~~ll~pGD~Vlv~~P~y~~---Y~~~~~l~g~~~~~v~v~~~~~~~f~~d~~~l~~~~~~-~tkai~l 247 (527)
T PRK09275 172 AAMCYIFDSLKENGLLKAGDKIALMTPIFTP---YLEIPELPRYDLEVVHINADEENEWQYPDSELEKLRDP-SIKALFL 247 (527)
T ss_pred HHHHHHHHHHhhhhcCCCCCEEEEeCCChHH---HHHHHHHcCCCeEEEEeecCcccCCCCCHHHHHhhcCC-CCCEEEE
Confidence 999999886 68999999987755544 34444566666677777654 4588999999998765 4555555
Q ss_pred cCCCCC-----cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe---eEE
Q psy13354 173 GASAYS-----QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG---GFI 239 (1342)
Q Consensus 173 ~~s~~~-----~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G---G~i 239 (1342)
++|+|| +...+++|+++|++ +|++||+||+|..... .+.+.. ....+++.||||.| |++| ||+
T Consensus 248 ~nP~NPTG~v~s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~s~~~~~~~~~I~v~SfSK~f-~mtG~RlG~i 323 (527)
T PRK09275 248 VNPSNPPSVAMSDESLEKIADIVNEKRPDLMIITDDVYGTFVD---DFRSLFAVLPYNTILVYSFSKYF-GATGWRLGVI 323 (527)
T ss_pred eCCcCCcCCCCCHHHHHHHHHHHHhcCCCcEEEECCCChhhcc---cccCHHHhCCCCEEEEeehhhhc-cCcHhHHhhh
Confidence 555666 22368999999965 5999999999976432 122221 12358899999999 8888 999
Q ss_pred EEech-----hHHHH--------------------------------hhccCCccccCCcHHHHHHHH----HHHHHhcc
Q psy13354 240 LMKKK-----YKKII--------------------------------NSAVFPGIQGGPLMHVIAAKA----VAFKEVLK 278 (1342)
Q Consensus 240 v~~~~-----l~~~l--------------------------------~~~~~~~~~~~~~~~~~~Aaa----~al~~~l~ 278 (1342)
+++++ +++.+ +. ...+...+.++|.+.+++ .++.+...
T Consensus 324 ~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p~~~~fidrlvad~~~-v~~~~t~~~s~p~Q~a~al~~~~all~~~~ 402 (527)
T PRK09275 324 ALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDPEKLKFIDRLVADSRQ-VALNHTAGLSTPQQVQMALFSLFALLDEED 402 (527)
T ss_pred hcCchhHHHHHHHhccHHHHHHHHhhhhhccCCcchhhhHHHHHHHHHH-HHHhhccCCCCHHHHHHHHHHHHHHHhCch
Confidence 99985 33322 11 122233445566666533 23333333
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCCcEEe-eCCCCCeEEEEEccCC----------------CCCHHHHHHHHHHCCcee
Q psy13354 279 PDFKIYQKQVVKNAKILSKILDQRGIRIV-SGGTKSHIILVDLRNK----------------KITGKIAESILESANIIC 341 (1342)
Q Consensus 279 ~~~~~~~~~l~~~a~~l~~~L~~~g~~~~-~~~~~~~~v~i~~~~~----------------~~~~~~~~~ll~~~GI~v 341 (1342)
.+.+..++.+.++++.+.+.| |+.+. .++.+++++|++++.. ..+.+++..+++++||.+
T Consensus 403 ~~~~~~~~~~~~Rr~~l~~~L---g~~~~~~~p~g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v 479 (527)
T PRK09275 403 AYKKAMKDIIRRRYKALYEGL---GLPEPEDPNNAAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVL 479 (527)
T ss_pred HHHHHHHHHHHHHHHHHHHHc---CCCCcCCCCCeeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEE
Confidence 467777888888888887777 44332 2456789999998642 135688999999999999
Q ss_pred eeccCCCCCCCccccccccccccccc
Q psy13354 342 NKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 342 ~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
.|+..++.+ .+++|++++...
T Consensus 480 ~PG~~Fg~~-----~~~vRis~a~~~ 500 (527)
T PRK09275 480 LPGGGFGGP-----EWSVRVSLANLN 500 (527)
T ss_pred eCchhhCCC-----CCeEEEEEecCC
Confidence 988777643 357999997643
No 210
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=99.81 E-value=1.7e-18 Score=204.77 Aligned_cols=304 Identities=17% Similarity=0.125 Sum_probs=189.7
Q ss_pred eecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc
Q psy13354 33 IASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 33 ~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~ 110 (1342)
++++|+.+| .+++++.+.... . ..|+......+ +++.+++++|.++.+ +++||++|+..++.+++
T Consensus 2 ~~~~~~~~~~~~v~~a~~~~~~~-~-------~~~~~~~~~~~----l~~~~a~~~g~~~~~-~~~~gt~a~~~~~~~l~ 68 (338)
T cd06502 2 FRSDTVTGPTPEMLEAMAAANVG-D-------DVYGEDPTTAK----LEARAAELFGKEAAL-FVPSGTAANQLALAAHT 68 (338)
T ss_pred cccccCCCCCHHHHHHHHhcccC-C-------cccCCCHHHHH----HHHHHHHHhCCCeEE-EecCchHHHHHHHHHhc
Confidence 456666544 388887665421 1 12222333344 445899999944444 44599999999999999
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc------CCeEEEEcCCCCCc----c
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN------KPKLIIAGASAYSQ----Y 180 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~------~~~liv~~~s~~~~----~ 180 (1342)
++||+|++.+..|.+...........|. +++.++.+. +.+|++++++++++. ++++++++++++++ .
T Consensus 69 ~~gd~v~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~g~~~~~ 145 (338)
T cd06502 69 QPGGSVICHETAHIYTDEAGAPEFLSGV--KLLPVPGEN-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEGGTVYPL 145 (338)
T ss_pred CCCCeEEEecCcceeeecCCcHHHHcCc--eEEeecCCC-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCCccccCH
Confidence 9999999877665443322112234566 455556543 679999999998752 46777776665552 3
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCC-CCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccc
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNP-VPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~-l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
.++++|+++|++||++||+|++|..+.... +..... ...+|+++.|+||+++++.|+++++++++++.++.....+..
T Consensus 146 ~~l~~i~~~~~~~~~~livDea~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 225 (338)
T cd06502 146 DELKAISALAKENGLPLHLDGARLANAAAALGVALKTYKSGVDSVSFCLSKGGGAPVGAVVVGNRDFIARARRRRKQAGG 225 (338)
T ss_pred HHHHHHHHHHHHcCCeEeechHHHHHHHHhcCCCHHHHHhcCCEEEEeccccCCCccceEEECCHHHHHHHHHHHHHhCC
Confidence 378889999999999999999986543221 211111 124689999999999545446566788888887654322211
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH---
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE--- 335 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~--- 335 (1342)
+...++..++++.+.++. ..+.+..+++.++++++.+.|.+.|+.+. ++..+++.+.++.. ......+++
T Consensus 226 ~~~~~~~~~~a~~~~L~~--~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~v~~~~~---~~~~~~l~~~l~ 298 (338)
T cd06502 226 GMRQSGFLAAAGLAALEN--DLWLRRLRHDHEMARRLAEALEELGGLES--EVQTNIVLLDPVEA---NAVFVELSKEAI 298 (338)
T ss_pred ChhhHHHHHHHHHHHhcC--chHHHHHHHHHHHHHHHHHHHHhcCCCcc--cccCCeEEEecCCc---cHHHHHHHHHHH
Confidence 111122222222222221 23455668888999999999999887542 34567777776432 223333332
Q ss_pred ---HCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 336 ---SANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 336 ---~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++|+.+.+.. .+++|++++..++.
T Consensus 299 ~~~~~gi~~~~~~----------~~~lRi~~~~~~~~ 325 (338)
T cd06502 299 ERRGEGVLFYAWG----------EGGVRFVTHWDTTE 325 (338)
T ss_pred HhhhCCEEEEecC----------CCeEEEEeecCCCH
Confidence 4698887641 14699999877664
No 211
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=99.80 E-value=8.4e-18 Score=202.18 Aligned_cols=322 Identities=16% Similarity=0.151 Sum_probs=212.8
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~- 110 (1342)
.++..++++.+++++.+.+.+. .++++.. +.......+..+.+++.+++++|.+ +.+++++|||+|+..++.++.
T Consensus 5 ~aa~~~~~~~v~~a~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~ 81 (379)
T TIGR03402 5 NNATTRVDPEVLEAMLPYFTEY--FGNPSSM-HSFGGEVGKAVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALA 81 (379)
T ss_pred CcCCCCCCHHHHHHHHHHHHhc--CCCCCcc-cHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHH
Confidence 4556788888999988887532 2444322 1112223455566888999999987 456677699999999988763
Q ss_pred --CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 111 --NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 111 --~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
.+||+|++...+|++....+..+...|.. ++.++.+.++.+|++++++.++++ +++++++.++++ ...|+++|
T Consensus 82 ~~~~~~~vv~~~~~~~s~~~~~~~~~~~G~~--v~~v~~~~~g~~~~~~l~~~i~~~-~~lv~i~~~~n~tG~~~~~~~I 158 (379)
T TIGR03402 82 AQPEKRHIITTAVEHPAVLSLCQHLEKQGYK--VTYLPVDEEGRLDLEELRAAITDD-TALVSVMWANNETGTIFPIEEI 158 (379)
T ss_pred hcCCCCeEEEcccccHHHHHHHHHHHHcCCE--EEEEccCCCCcCCHHHHHHhcCCC-cEEEEEEcccCCeeecccHHHH
Confidence 45788888777777665555555556764 444566667889999999999764 566555444444 55599999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc------CCccc
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV------FPGIQ 258 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~------~~~~~ 258 (1342)
.++|+++|+++++|++|+.|...- ... ..+|++++|+||++ ||.| |+++.+++.. +.+.. .....
T Consensus 159 ~~l~~~~g~~vivD~~~~~g~~~~----~~~~~~~D~~~~s~~K~~-gp~G~g~l~v~~~~~--~~p~~~g~~~~~~~~~ 231 (379)
T TIGR03402 159 GEIAKERGALFHTDAVQAVGKIPI----DLKEMNIDMLSLSGHKLH-GPKGVGALYIRKGTR--FRPLLRGGHQERGRRA 231 (379)
T ss_pred HHHHHHcCCEEEEECccccccccc----CcccCCCCEEEEcHHHcC-CCCceEEEEECCCCC--CCCcccCCccCCCcCC
Confidence 999999999999999998765411 111 13799999999955 8999 9999887541 21111 11234
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-C-CcEEeeCCC-C-CeEEEEEccCCCCCHHHHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-R-GIRIVSGGT-K-SHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~-g~~~~~~~~-~-~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++++.+...++..++..... +++...++..++++++.+.|.+ . ++.+..++. . ..++.+.++.. +.+.+...|
T Consensus 232 gt~~~~~~~~l~~al~~~~~-~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 308 (379)
T TIGR03402 232 GTENVPGIVGLGKAAELATE-HLEEENTRVRALRDRLEAGLLARIPDARLNGDPTKRLPNTVNISFEYI--EGEAILLLL 308 (379)
T ss_pred CCccHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHhhCCCEEEeCCCccCCCCEEEEEecCC--CHHHHHHhh
Confidence 56667777777766655543 7777788899999999999875 3 566644221 1 12343333322 234444456
Q ss_pred HHCCceeeeccCCCCCC-C------------cccccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPE-K------------PYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~-~------------~~~~~~lRi~~~~~~t~~ 370 (1342)
+++||.+.++.....+. . ....+.+|+|++.++|.+
T Consensus 309 ~~~gI~v~~g~~c~~~~~~~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~ 357 (379)
T TIGR03402 309 DMEGICASSGSACTSGSLEPSHVLRAMGVPHTAAHGSIRFSLSRYNTEE 357 (379)
T ss_pred ccCCEEEEchhhcCCCCCCcCHHHHHcCCChhhcCceEEEEcCCCCCHH
Confidence 77799998753211110 0 001357999999998853
No 212
>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase. This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).
Probab=99.80 E-value=1.3e-17 Score=201.95 Aligned_cols=318 Identities=14% Similarity=0.068 Sum_probs=196.3
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+++. +++.+.+++...+.+... . .....|+...+..++++++++++.+. +.+ +.+++++|+++++..
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~~~~~~~~~~~~-~-~~~~~Y~p~~g~~~lr~aia~~~~~~-~~~~d~I~it~Ga~~al~~ 110 (402)
T TIGR03542 34 DIIRLGIGDTTQPLPASVIEAFHNAVDELAS-E-ETFRGYGPEQGYPFLREAIAENDYRG-RIDPEEIFISDGAKCDVFR 110 (402)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHHhcccc-c-ccccCCCCCCCCHHHHHHHHHHHHhc-CCCHHHEEECCCcHHHHHH
Confidence 45778877765 345588888777643211 0 11122444556668888565543221 343 445555477778877
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCc-ee--------EEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGK-WF--------NSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~-~~--------~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
+ ..++.+||+|++..+.++.+. ......|. ++ ++++++.+ +++.+|++. ..++++++++
T Consensus 111 l-~~l~~~gd~Vlv~~P~y~~~~---~~~~~~g~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~~~~~~i~l~ 180 (402)
T TIGR03542 111 L-QSLFGSDNTVAVQDPVYPAYV---DSNVMAGRAGVLDDDGRYSKITYLPCTKENNFIPDLPE------EPKIDIIYLC 180 (402)
T ss_pred H-HHhcCCCCEEEEeCCCCcchH---HHHHHcCCccccccccccceEEEeecchhhCCCCCccc------cCCceEEEEe
Confidence 5 556689999998776665443 33344454 11 44444544 234444321 1345777776
Q ss_pred CCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC---CcEEEecCCccCCCCCe---eEEE
Q psy13354 174 ASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF---ADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 174 ~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~---~Divv~S~sK~l~gp~G---G~iv 240 (1342)
+++|| ....+++|+++|++||++||+||+|............. ++. ..++++||||.| |.+| ||++
T Consensus 181 nP~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-g~pGlRiG~~i 259 (402)
T TIGR03542 181 SPNNPTGTVLTKEQLKELVDYANEHGSLILFDAAYSAFISDPSLPHSIFEIPGAKECAIEFRSFSKTA-GFTGVRLGWTV 259 (402)
T ss_pred CCCCCCCccCCHHHHHHHHHHHHHcCeEEEEEchhhhhccCCCCCcchhhCCCCcccEEEEecCcccc-CCCCcceEEEE
Confidence 77777 22358999999999999999999997654322111111 111 246789999999 6666 9999
Q ss_pred EechhH--------HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC
Q psy13354 241 MKKKYK--------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK 312 (1342)
Q Consensus 241 ~~~~l~--------~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~ 312 (1342)
++++++ +.+... ......+.+.+.+.++..++......+..+.++.+.++++++.+.|++.|+++. .+.+
T Consensus 260 ~~~~l~~~~~~~~~~~~~~~-~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~-~~~~ 337 (402)
T TIGR03542 260 VPKELTYADGHSVIQDWERR-QCTKFNGASYPVQRAAEAAYAGEGLQPILEAISYYMENARILRKALEAAGFKVY-GGEH 337 (402)
T ss_pred ecHHHhhcchhhHHHHHHHH-hhhcccCCCHHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHhcCceec-CCCc
Confidence 998776 222111 111222333445554443333211124555677788999999999998887753 3457
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 313 SHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 313 ~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++|+.++....+.+++..+++++||.+.++..++... .+++|+++..
T Consensus 338 ~~f~~v~l~~~~~~~~l~~~l~~~~gv~v~pg~~f~~~~----~~~iRis~~~ 386 (402)
T TIGR03542 338 APYLWVKTPEGISSWDFFDFLLYQYHVVGTPGSGFGPSG----EGFVRFSAFG 386 (402)
T ss_pred eeEEEEECCCCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEecC
Confidence 889999998655566788888888899999876554322 3679999644
No 213
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=99.80 E-value=2e-17 Score=197.87 Aligned_cols=308 Identities=15% Similarity=0.108 Sum_probs=190.2
Q ss_pred eeeeecCCCCcHH----HHHHHhHHHHhccc-------cCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCH
Q psy13354 30 IELIASENYTSLA----VMEAQGTLLTNKYA-------EGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSG 98 (1342)
Q Consensus 30 i~l~a~~n~l~~~----v~eal~~~l~~~~~-------~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sG 98 (1342)
+..++++||++.. +.+++.+++. .|. .+..+++...+ ..++.+++++.+++++|.+.+++++ +|
T Consensus 6 ~~~~~s~~YL~~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~gs~~~~g---~~~~~~~~e~~la~~~~~~~~l~~~-sG 80 (370)
T PRK05937 6 SIDFVTNDFLGFSRSDTLVHEVEKRYR-LYCRQFPHAQLGYGGSRAILG---PSSLLDDLEHKIAHFHGAPEAFIVP-SG 80 (370)
T ss_pred eEEeECCCccCCCCCHHHHHHHHHHHH-HhccccCCCCCCCCCcCcccC---ChHHHHHHHHHHHHHhCCCeEEEEC-Ch
Confidence 4578889998765 8888777775 342 23333333322 1233344555999999998887777 89
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEc
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAG 173 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~ 173 (1342)
+.|+..++..+.++||.|++....|++. ...+..... ..+.++. .|++++++.+++. ++.+++++
T Consensus 81 ~~a~~~~~~~~~~~~d~ii~d~~~H~sv---~~~~~~~~~--~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~v~ 150 (370)
T PRK05937 81 YMANLGLCAHLSSVTDYVLWDEQVHISV---VYSLSVISG--WHQSFRH-----NDLDHLESLLESCRQRSFGRIFIFVC 150 (370)
T ss_pred HHHHHHHHHHhCCCCCEEEEEhhhhHHH---HHHHHHcCC--ceEEecC-----CCHHHHHHHHHhhhccCCCcEEEEEe
Confidence 9999877777777888888666555443 333333222 2233333 4899999988742 23455454
Q ss_pred CCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC----CCCCCCCcEEEecCCccCCCCCeeEEEEechhHH
Q psy13354 174 ASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY----PNPVPFADFITSTTHKSLRGPRGGFILMKKKYKK 247 (1342)
Q Consensus 174 ~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~----~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~ 247 (1342)
+.+++ ...|+++|.++|+++|+++++|++|+.|.++.... .......+++++|+||++ |+.|+.+++.++...
T Consensus 151 ~v~s~~G~i~pl~eI~~l~~~~~~~livDea~~~G~~g~~g~g~~~~~~~~~~~~~~~tlsK~~-g~~G~~vl~~~~~~~ 229 (370)
T PRK05937 151 SVYSFKGTLAPLEQIIALSKKYHAHLIVDEAHAMGIFGDDGKGFCHSLGYENFYAVLVTYSKAL-GSMGAALLSSSEVKQ 229 (370)
T ss_pred cCCCCCCCccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCcEEEEechhhh-hcCceEEEcCHHHHH
Confidence 43333 56699999999999999999999999886643210 001112346788999999 888866667676666
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+.....++.++++.++...++..+..+.+.+.....++++.++++++.+.|...+. +...++.++.. ..
T Consensus 230 ~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~~~~~~~~l~~l~~~l~~~l~~~~~--------~~~~~i~~~~~--~~ 299 (370)
T PRK05937 230 DLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQEGELARKQLFRLKEYFAQKFSSAAP--------GCVQPIFLPGI--SE 299 (370)
T ss_pred HHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCCCC--------CCEEEEEeCCh--hH
Confidence 555333444444333333333333334333223344567888888888887754211 11233444432 23
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.+...|.++||.+...++|.. +.+|++++..+|.+
T Consensus 300 ~~~~~~L~~~gi~v~~~~~~~~-------~~iRis~~~~~t~e 335 (370)
T PRK05937 300 QELYSKLVETGIRVGVVCFPTG-------PFLRVNLHAFNTED 335 (370)
T ss_pred HHHHHHHHHCCeeEEeeCCCCC-------CEEEEEcCCCCCHH
Confidence 4555556667999986655532 35999999998854
No 214
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=99.80 E-value=7.4e-18 Score=201.73 Aligned_cols=306 Identities=11% Similarity=0.107 Sum_probs=202.9
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~ 102 (1342)
..+.+..++|+.+++ +++++.+.+..... ....|. ..+...+++++++++.+.+|.+ +.+++++|+++++
T Consensus 27 ~~i~l~~~~~~~~~~~~~~~al~~~l~~~~~----~~~~Y~-~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l 101 (368)
T PRK03317 27 VPVRLNTNENPYPPSPALVADIAEAVAEAAA----GLNRYP-DRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEIL 101 (368)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhhhh----hhccCC-CCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHH
Confidence 347788888665443 88888877642110 011232 2345678887777777766643 4555665788899
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~ 180 (1342)
..++.++++|||.|++..+.|+.+ .......|. ++++++.++++.+|++++++++.+.+++++++++++|| ..
T Consensus 102 ~~~~~~~~~~gd~v~v~~P~y~~~---~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~~~~~~~~~i~l~~p~NPtG~~ 176 (368)
T PRK03317 102 QQLLQAFGGPGRTALGFVPSYSMH---PIIARGTHT--EWVEGPRAADFTLDVDAAVAAIAEHRPDVVFLTSPNNPTGTA 176 (368)
T ss_pred HHHHHHhcCCCCEEEEeCCChHHH---HHHHHhcCC--eeEEcccCCCCCCCHHHHHHHHhccCCCEEEEeCCCCCCCCC
Confidence 999999999999999777555443 333444454 56666666678899999999988666777777777777 44
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----C-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----F-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
.+.+++.++|+.++++||+||+|...... +. ..... . ..++++||||.+ |..| ||+++++++++.+...
T Consensus 177 ~~~~~l~~l~~~~~~~lI~DE~y~~~~~~-~~-~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~~~~~~~~~~l~~~ 253 (368)
T PRK03317 177 LPLDDVEAILDAAPGIVVVDEAYAEFRRS-GT-PSALTLLPEYPRLVVSRTMSKAF-AFAGGRLGYLAAAPAVVDALRLV 253 (368)
T ss_pred CCHHHHHHHHHHCCceEEEeCCchhhccc-CC-cCHHHHHHhCCCEEEEEechhhh-ccchhhhhhhhCCHHHHHHHHhc
Confidence 58999999999999999999999753221 11 11111 1 237788999999 6667 9999999999988765
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
..++. .+...+.++..++. ... .+.+..+++.++++.+.+.|.+.|+.+.. +.+++++|..+. .+.++...
T Consensus 254 ~~~~~---~s~~~~~a~~~~l~-~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~---~~~~~~~~ 324 (368)
T PRK03317 254 RLPYH---LSAVTQAAARAALR-HAD-ELLASVAALRAERDRVVAWLRELGLRVAP-SDANFVLFGRFA---DRHAVWQG 324 (368)
T ss_pred CCCCC---CCHHHHHHHHHHhh-CHH-HHHHHHHHHHHHHHHHHHHHHHCCCEeCC-CCCcEEEEeccC---CHHHHHHH
Confidence 43332 22334444444433 222 44455677888888999999988887643 344555554442 23344544
Q ss_pred HHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.++||.+.+... .+++|++++.
T Consensus 325 -l~~~Gv~v~~~~~---------~~~iRi~~~~ 347 (368)
T PRK03317 325 -LLDRGVLIRDVGI---------PGWLRVTIGT 347 (368)
T ss_pred -HHHCCEEEEeCCC---------CCeEEEecCC
Confidence 4456999985421 2469999763
No 215
>KOG0259|consensus
Probab=99.80 E-value=1.4e-17 Score=183.56 Aligned_cols=323 Identities=16% Similarity=0.078 Sum_probs=227.2
Q ss_pred CceeeeecC------CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCH
Q psy13354 28 NNIELIASE------NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~------n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sG 98 (1342)
..|.+..|. -..++.+.+|+.+++......+ |+.+.+...-++++++.+.+-+..+ +.++.+.+.
T Consensus 62 ~iipl~~GDPsv~~~~~ts~~a~~Av~~al~Sgk~N~------Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC 135 (447)
T KOG0259|consen 62 PILPLGHGDPSVYPCFRTSQEAEQAVVDALRSGKGNG------YAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGC 135 (447)
T ss_pred eeccCCCCCCCccccccCCHHHHHHHHHHHhcCCCCC------cCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccc
Confidence 346665543 2244458889998886433323 4455555565664444433322221 445555488
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
++|++.++.++.+||..|+++.+.++.+.+. ....|..++...+-.+.+|++|++.++.++.+++.++++.+++|+.
T Consensus 136 ~qAIe~~i~~LA~p~aNILlPrPGfp~Y~~~---a~~~~lEVR~ydlLPe~~weIDL~~veal~DENT~AivviNP~NPc 212 (447)
T KOG0259|consen 136 SQAIELAISSLANPGANILLPRPGFPLYDTR---AIYSGLEVRYYDLLPEKDWEIDLDGVEALADENTVAIVVINPNNPC 212 (447)
T ss_pred hHHHHHHHHHhcCCCCceecCCCCCchHHHh---hhhcCceeEeecccCcccceechHHHHHhhccCeeEEEEeCCCCCC
Confidence 9999999999999999999666555444333 3556776666655456889999999999999988888887554444
Q ss_pred ----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC----CcEEEecCCccCCCCCe---eEEEEech---
Q psy13354 179 ----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----ADFITSTTHKSLRGPRG---GFILMKKK--- 244 (1342)
Q Consensus 179 ----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~----~Divv~S~sK~l~gp~G---G~iv~~~~--- 244 (1342)
+...+++|+++|+++|++||.||+|....++...+.+--.. .-+..+|.||.+ -.+| ||++.++.
T Consensus 213 GnVys~~HL~kiae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW-~VPGWRlGWi~~hD~~gv 291 (447)
T KOG0259|consen 213 GNVYSEDHLKKIAETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRW-IVPGWRLGWIALHDPRGV 291 (447)
T ss_pred cccccHHHHHHHHHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeeccccccc-ccCCceeeeEEEeccccc
Confidence 33479999999999999999999999887766544322111 346678999977 3455 99998862
Q ss_pred -----hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEE
Q psy13354 245 -----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 245 -----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i 318 (1342)
..+.+.+. .....+|.+..+.|+-..+.+--++.+.....-+..+++...+.|++. ++.....|.+..+.|+
T Consensus 292 f~~~~~~q~~~~~--~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~IP~l~cp~kPeg~mylmv 369 (447)
T KOG0259|consen 292 FRDTKVVQGIKNF--LDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDIPCLTCPVKPEGCMYLMV 369 (447)
T ss_pred ccchHHHHHHHHH--HhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcCCCcccCcCCCcceEEEe
Confidence 22334332 223455667777777666666556678888999999999999999995 5665556778888887
Q ss_pred Ecc-----CCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 319 DLR-----NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 319 ~~~-----~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+. +..++.+++..+.+|..+.+-|+..++.+ +++|++++...+
T Consensus 370 ~l~~s~~~~~~dD~dFc~kL~~Eesv~~LPG~af~~~------nw~Ri~i~~~~~ 418 (447)
T KOG0259|consen 370 KLNLSLFPDIEDDVDFCQKLAREESVICLPGQAFGLK------NWLRIVITVEEE 418 (447)
T ss_pred ccchhhhccccccHHHHHHHhhhcceEEeccccccCC------CeEEEEEccChH
Confidence 763 44567899999999999999988777765 469999877655
No 216
>PRK09265 aminotransferase AlaT; Validated
Probab=99.80 E-value=2.4e-17 Score=199.75 Aligned_cols=334 Identities=14% Similarity=0.087 Sum_probs=201.6
Q ss_pred cccccchHHHHHHHHHHHhc----cCceeeeecCC-C----CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQ----NNNIELIASEN-Y----TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKI 77 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~----~~~i~l~a~~n-~----l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~ 77 (1342)
.+..+.+.+...+....++. .+.+.|..++. . .++.+.+++.+.+.. . ..|+...+..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~g~p~~~~~~~~~~i~~~~~~~~~~--~------~~Y~~~~G~~~lr~~ 80 (404)
T PRK09265 9 KLENVCYDIRGPVLKEAKRLEEEGHKILKLNIGNPAPFGFEAPDEILRDVIRNLPT--A------QGYSDSKGLFSARKA 80 (404)
T ss_pred HHHhcCcchhHHHHHHHHHHHHcCCCeEEecCCCCCcCCCCCCHHHHHHHHHHhhc--C------CCCCCCCCcHHHHHH
Confidence 34444444444443333322 35577776532 1 344577776665431 1 123444455577775
Q ss_pred HHHHHHHHh--CCC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCC
Q psy13354 78 AINRLKKIF--NAE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEK 152 (1342)
Q Consensus 78 ~~~~la~~~--g~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~ 152 (1342)
+++++.... +.+ +.+++++|+++++..++.+++++||+|+++++.|+.+ ...+...|. ..+.++.+ .++.
T Consensus 81 ia~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~~~~~gd~Vlv~~p~y~~~---~~~~~~~g~--~~v~~~~~~~~~~~ 155 (404)
T PRK09265 81 IMQYYQQKGIPDVDVDDIYIGNGVSELIVMAMQALLNNGDEVLVPAPDYPLW---TAAVSLSGG--KPVHYLCDEEAGWF 155 (404)
T ss_pred HHHHHhccCCCCCCcccEEEeCChHHHHHHHHHHhCCCCCEEEEeCCCCcCh---HHHHHHcCC--EEEEEecccccCCC
Confidence 555554321 333 4556665778899999999999999999887666543 333445565 44444443 4577
Q ss_pred CCHHHHHHHHHhcCCeEEEEcCCCCC-c-ccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CC-CcEE
Q psy13354 153 IDYKKVEYLAKKNKPKLIIAGASAYS-Q-YID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PF-ADFI 223 (1342)
Q Consensus 153 id~e~Le~~i~~~~~~liv~~~s~~~-~-~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~-~Div 223 (1342)
+|++++++.+.+. ++++++++++|| + ..+ +++|+++|+++|++||+||+|....+....+.+.. .. .-++
T Consensus 156 ~d~~~l~~~~~~~-~~~v~l~~P~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi~ 234 (404)
T PRK09265 156 PDLDDIRSKITPR-TKAIVIINPNNPTGAVYSKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCVT 234 (404)
T ss_pred CCHHHHHHhcccc-ceEEEEECCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEEE
Confidence 9999999988654 555555455555 3 234 89999999999999999999875443222222211 11 2356
Q ss_pred EecCCccCCCCCe---eEEEEe--ch----hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHH---HHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMK--KK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKI---YQKQVVKN 291 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~--~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~---~~~~l~~~ 291 (1342)
++||||.+ |.+| ||++++ +. +++.+..... ...+++.+.+.++..++... . ..+. ..+++.++
T Consensus 235 ~~S~SK~~-~~pGlRiG~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~~-~-~~~~~~~~~~~~~~~ 309 (404)
T PRK09265 235 FNGLSKAY-RVAGFRVGWMVLSGPKKHAKGYIEGLDMLAS--MRLCANVPAQHAIQTALGGY-Q-SINELILPGGRLYEQ 309 (404)
T ss_pred Eecchhhc-cCcccceEEEEEeCchHHHHHHHHHHHHHhc--cccCCCcHHHHHHHHHhcCc-h-hHHHHHHHHHHHHHH
Confidence 79999999 6666 999963 33 3333332111 11223344555554444221 1 2222 22467778
Q ss_pred HHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC----CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 292 AKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK----ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 292 a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~----~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++.+.+.|++. |+.+. .+.+++++|+.++... .+.+++..++.++||.+.++..++... .+++|++++
T Consensus 310 r~~~~~~L~~~~~~~~~-~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~----~~~~Ri~~~ 382 (404)
T PRK09265 310 RDRAWELLNAIPGVSCV-KPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPE----PDHFRIVTL 382 (404)
T ss_pred HHHHHHHHhcCCCCccc-CCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCC----CCeEEEEeC
Confidence 88888999876 66543 3567899999887532 245667778888899999876654322 357999985
No 217
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.80 E-value=2.2e-18 Score=202.08 Aligned_cols=207 Identities=19% Similarity=0.250 Sum_probs=166.5
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
|-.+|||.+|++++||+++++.+...+. .+..++.++||||||+|||++|+.+++.++..
T Consensus 15 ~~~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~---------------- 78 (328)
T PRK00080 15 IERSLRPKSLDEFIGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVN---------------- 78 (328)
T ss_pred hhhhcCcCCHHHhcCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCC----------------
Confidence 3578999999999999999998887775 35555678999999999999999999998731
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC---------
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP--------- 527 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~--------- 527 (1342)
+...++.......++..++..+ +...+++|||+|.++....+.|...+++..
T Consensus 79 -------------~~~~~~~~~~~~~~l~~~l~~l------~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~ 139 (328)
T PRK00080 79 -------------IRITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGP 139 (328)
T ss_pred -------------eEEEecccccChHHHHHHHHhc------ccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCc
Confidence 2222222222223444444332 346799999999999877777777776431
Q ss_pred ---------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHH
Q psy13354 528 ---------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597 (1342)
Q Consensus 528 ---------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a 597 (1342)
+..++|++++....+.++|++|| ..+.|.+++.+++.+++.+.+...++.+++++++.|++.++|++|.+
T Consensus 140 ~~~~~~~~l~~~~li~at~~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G~pR~a 219 (328)
T PRK00080 140 AARSIRLDLPPFTLIGATTRAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRGTPRIA 219 (328)
T ss_pred cccceeecCCCceEEeecCCcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCCCchHH
Confidence 34678999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 598 LSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 598 ~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.++++..++ ...|+.+++.+++.
T Consensus 220 ~~~l~~~~~~a~~~~~~~I~~~~v~~~l~ 248 (328)
T PRK00080 220 NRLLRRVRDFAQVKGDGVITKEIADKALD 248 (328)
T ss_pred HHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 99999876654 35699998887773
No 218
>PLN02672 methionine S-methyltransferase
Probab=99.80 E-value=9.4e-18 Score=215.31 Aligned_cols=313 Identities=14% Similarity=0.100 Sum_probs=206.5
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC----ceEecCCHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA----ANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~----~vi~~~sGs~A 101 (1342)
..|.+..+++.++++ +++++.+.+. ... + .+ +..++.+++++++++.+|.+. .+++++|++++
T Consensus 698 ~vI~LsinE~d~ppPp~V~eAi~eal~-~~~--~----s~----g~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~el 766 (1082)
T PLN02672 698 SLIHMDVDESFLPVPSAVKASIFESFV-RQN--I----SE----SETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLAL 766 (1082)
T ss_pred CEEEEeCCCCCCCCCHHHHHHHHHHHh-hcC--C----CC----CChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHH
Confidence 558899988775544 8888877663 221 1 11 122456778889999988762 46666566668
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-CeEEEEcCCCCC--
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-PKLIIAGASAYS-- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-~~liv~~~s~~~-- 178 (1342)
+..++.++++|||+|+++.+.++.+ ...+...|..+..+++..++++.+|++.+++++++.+ +.+++++|++||
T Consensus 767 L~lll~aLl~pGD~VLVp~PtY~~Y---~~~a~~~Ga~vv~Vpl~~e~gf~lD~d~Le~al~~~~~~~I~L~nPnhNPTG 843 (1082)
T PLN02672 767 FNKLVLCCVQEGGTLCFPAGSNGTY---VSAAKFLKANFRRIPTKSSDGFKLTAKTLASTLETVKKPWVYISGPTINPTG 843 (1082)
T ss_pred HHHHHHHHcCCCCEEEEeCCChHHH---HHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccCCCCEEEEECcCCCCcC
Confidence 8889999999999999877555444 4455667774444443323468899999999987633 345555444255
Q ss_pred ---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC-----CCC---CC-----CCcEEEecCCccCCCCCe---eEE
Q psy13354 179 ---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY-----PNP---VP-----FADFITSTTHKSLRGPRG---GFI 239 (1342)
Q Consensus 179 ---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~-----~~~---l~-----~~Divv~S~sK~l~gp~G---G~i 239 (1342)
....+++|+++|++||++||+||+|....+....+ .+. .+ ..-++++||||.+ +.+| ||+
T Consensus 844 ~v~S~eeLe~Llela~k~di~VIsDEaYsdL~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf-~lpGLRIGyl 922 (1082)
T PLN02672 844 LLYSNSEIEEILSVCAKYGARVIIDTSFSGLEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTEL-LSGGHEFGFL 922 (1082)
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEeCCCCccccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhh-ccHHHHheeE
Confidence 33378999999999999999999997544422111 000 00 0236788999999 7777 999
Q ss_pred EEech-hHHHHhhccCCccccCCcHHHHHHHH--HHHHH--h--ccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC
Q psy13354 240 LMKKK-YKKIINSAVFPGIQGGPLMHVIAAKA--VAFKE--V--LKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK 312 (1342)
Q Consensus 240 v~~~~-l~~~l~~~~~~~~~~~~~~~~~~Aaa--~al~~--~--l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~ 312 (1342)
++++. +++.+..... ...+....+.++. .++.. . ...+..+.++.+.++++++.+.|.+.|+.+. ++.+
T Consensus 923 Iap~~eLi~~l~~~~~---~s~~~~~~q~Aaaaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~Gi~v~-~PeG 998 (1082)
T PLN02672 923 ALNDSVLIDAFHSAPG---LSRPHSTLKYTIKKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEACGWDVL-EPQG 998 (1082)
T ss_pred EeCCHHHHHHHHHhhh---hcCCCcHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHCCCeEe-cCCc
Confidence 99764 8888765321 1111112222222 22121 0 1124566777899999999999999998764 4667
Q ss_pred CeEEEEEccC-----------------CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 313 SHIILVDLRN-----------------KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 313 ~~~v~i~~~~-----------------~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++|++++. ...+.+++..++++.||.+.|+.+++. ++++|++++.
T Consensus 999 GFfLwl~l~~~l~~~~~~~~~~~~~~~~lds~efae~LLee~GVaV~PGs~FG~------~g~~RIsfa~ 1062 (1082)
T PLN02672 999 GISMVAKPSAYLGKTVKLKSIDGDTGIKLDSSNIREAILKSTGLCINSSSWTGI------PGYCRFSFAL 1062 (1082)
T ss_pred EEEEEEEccccccccccccccccccccCCCHHHHHHHHHHcCCEEEecCcccCC------CCeEEEEecC
Confidence 8888987631 113457888888888999998765543 3579999885
No 219
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=99.79 E-value=2.4e-17 Score=197.10 Aligned_cols=325 Identities=11% Similarity=0.053 Sum_probs=208.2
Q ss_pred cccccccccchHHHHHHHHHH-HhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHH
Q psy13354 3 IKNENLSKIDPKIWEIILKEK-QRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAI 79 (1342)
Q Consensus 3 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~ 79 (1342)
..+++++..++..+..+.... ......+.+..++... ++.+.+++.+... . ..|....+..+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~--------~~Y~~~~G~~~lr~~ia 72 (364)
T PRK07865 2 PVSARLPDFPWDTLAPAKATAAAHPDGIVDLSVGTPVDPVPPVIQEALAAAAD-A--------PGYPTTAGTPELREAIV 72 (364)
T ss_pred CccccCCCccHHHHHHHHHHHHhcCCCEEEcCCCCCCCCCCHHHHHHHHHHHh-h--------CCCCCccCCHHHHHHHH
Confidence 345667776666666664333 3334557777665433 3457777655432 1 12444455668888888
Q ss_pred HHHHHHhCC---C-CceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCC
Q psy13354 80 NRLKKIFNA---E-AANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKID 154 (1342)
Q Consensus 80 ~~la~~~g~---~-~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id 154 (1342)
+++.+.+|. + +.+++++|+++++..++.++ +++||+|++..+.++.+ .......|. +++.++ +
T Consensus 73 ~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~---~~~~~~~g~--~~~~~~-------~ 140 (364)
T PRK07865 73 GWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLGLGPGDVVVIPELAYPTY---EVGARLAGA--TVVRAD-------S 140 (364)
T ss_pred HHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcccH---HHHHHhcCC--EEEecC-------C
Confidence 888877653 2 45566657778998888887 79999999877655544 344455566 444433 2
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--------CCc
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--------FAD 221 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--------~~D 221 (1342)
++++.. .+++++++++++|| ...++++|+++|++||++||+||+|....+. +.....+. ...
T Consensus 141 ~~~l~~----~~~~~v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~~~~ 215 (364)
T PRK07865 141 LTELGP----QRPALIWLNSPSNPTGRVLGVDHLRKVVAWARERGAVVASDECYLELGWD-AEPVSILDPRVCGGDHTGL 215 (364)
T ss_pred hhhCCc----ccceEEEEcCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhhhccC-CCCCccccccccCCccceE
Confidence 333322 35677777666666 2236889999999999999999999754332 21111111 124
Q ss_pred EEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 222 ivv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++++||||.+ |.+| ||+++++++++.+.........+ .+.+.+.++..++.. ..+.++.++.+.++++.+.+.
T Consensus 216 i~~~S~SK~~-~~~GlRiG~i~~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~ 291 (364)
T PRK07865 216 LAVHSLSKQS-NLAGYRAGFVAGDPALVAELLEVRKHAGMM-VPAPVQAAMVAALGD--DAHVREQRERYARRRAVLRPA 291 (364)
T ss_pred EEEeechhcc-CCCceeeEEEecCHHHHHHHHHHHHhcCCC-cCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999 5555 99999999888887543222222 334455544444332 235667788889999999999
Q ss_pred HHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 299 LDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 299 L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
|++.|+.+.. +.+++++|+.++. .+.++. ..+.++||.+.++..++... .+++|++++.
T Consensus 292 L~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~-~~l~~~gv~v~pg~~f~~~~----~~~iRi~~~~ 350 (364)
T PRK07865 292 LEAAGFRVDH-SEAGLYLWATRGE--DCWDTV-AWLAERGILVAPGDFYGPAG----AQHVRVALTA 350 (364)
T ss_pred HHHcCCcccC-CCccEEEEEeCCC--CHHHHH-HHHHHCCEEEeCccccCcCC----CCEEEEEecC
Confidence 9998877543 4567788888742 233444 44556799999876554322 3579999876
No 220
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=99.79 E-value=3.5e-18 Score=203.63 Aligned_cols=296 Identities=15% Similarity=0.185 Sum_probs=197.7
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
..+.|..|+|.++++ +++++.+.+.+. ..|+ ..+..++++ .+++++|.+ +.+++++|+++++..
T Consensus 30 ~~i~l~~nen~~~~~~~v~~a~~~~~~~~--~~Yp-------~~g~~~Lr~----aia~~~~~~~~~I~vt~Gs~e~i~~ 96 (366)
T PRK01533 30 SFVKLASNENPFGCSPRVLDELQKSWLDH--ALYP-------DGGATTLRQ----TIANKLHVKMEQVLCGSGLDEVIQI 96 (366)
T ss_pred ceEEeCCCCCCCCCCHHHHHHHHHHHHhc--CcCC-------CCCHHHHHH----HHHHHhCCCcceEEECCCHHHHHHH
Confidence 558899998876543 888887765321 1122 223345555 777778877 456666588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++++|||+|++..+.++. +.......|. +++.++.+ ++.+|++++++.+++ +++++++++++|| ...+
T Consensus 97 ~~~~l~~~gd~vlv~~P~y~~---~~~~~~~~g~--~v~~v~~~-~~~~d~~~l~~~~~~-~~~~v~i~~P~NPTG~~~~ 169 (366)
T PRK01533 97 ISRAVLKAGDNIVTAGATFPQ---YRHHAIIEGC--EVKEVALN-NGVYDLDEISSVVDN-DTKIVWICNPNNPTGTYVN 169 (366)
T ss_pred HHHHhcCCCCEEEEcCCcHHH---HHHHHHHcCC--EEEEeecC-CCCcCHHHHHHHhCc-CCcEEEEeCCCCCCCCCcC
Confidence 999999999999977655443 3444566677 44444554 456899999998865 4566666677776 2224
Q ss_pred ---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC---CCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhh
Q psy13354 183 ---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINS 251 (1342)
Q Consensus 183 ---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~ 251 (1342)
+++|+++|++++ ++|+||+|...... +..... ++. ..+++.||||.| |++| ||+++++++++.+..
T Consensus 170 ~~~l~~l~~~~~~~~-~~iiDe~y~~~~~~-~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiG~~i~~~~~~~~l~~ 246 (366)
T PRK01533 170 DRKLTQFIEGISENT-LIVIDEAYYEYVTA-KDFPETLPLLEKHKNILVLRTFSKAY-GLASFRVGYAVGHEELIEKLNV 246 (366)
T ss_pred HHHHHHHHHhCCCCC-EEEEEccHHHhhcc-ccCcchhHHhccCCCEEEEeCchHHh-cChHHHHhHHhCCHHHHHHHHH
Confidence 556666666666 67789998643322 111111 111 248889999999 7777 999999999988876
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...++ +.+.+.+.++..++. . .++.+..++.+.++++++.+.++..|+++.. +.++++|+.++. +.++..
T Consensus 247 ~~~~~---~~~~~~q~aa~~~l~-~-~~~~~~~~~~~~~~r~~~~~~l~~~g~~~~~--~~~nf~~~~~~~---~~~~~~ 316 (366)
T PRK01533 247 VRLPF---NVSSLAQKAATIAFG-D-DEFIEEIVRVNTEGLRQYESFCKENEIPFYQ--SQTNFIFLPVEN---GGEIYE 316 (366)
T ss_pred hcCCC---CcCHHHHHHHHHHhC-C-HHHHHHHHHHHHHHHHHHHHHHHhCCCccCC--CcCcEEEEeCCC---HHHHHH
Confidence 54332 334555555555553 2 2366677778888888888888888887643 567899998752 345555
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.++ ++||.|.+. .+++|++++....
T Consensus 317 ~l~-~~GI~Vr~~-----------~~~iRis~~~~~~ 341 (366)
T PRK01533 317 ACA-HAGFIIRPF-----------PNGVRITVGTREQ 341 (366)
T ss_pred HHH-HCCcEEccC-----------CCceEEeCCCHHH
Confidence 555 569999962 2359999877533
No 221
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=99.79 E-value=1.5e-17 Score=198.62 Aligned_cols=300 Identities=16% Similarity=0.175 Sum_probs=201.9
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+++.+ ++.+.+++.+.+.. . . +| ...+..++++ .++++++.+ +.+++++|+++++..
T Consensus 30 ~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~--~-----~~-p~~g~~~lr~----~ia~~~~~~~~~i~~t~G~~~~l~~ 96 (359)
T PRK03158 30 KIVKLASNENPYGPSPKVKEAIAAHLDE-L--A-----LY-PDGYAPELRT----KVAKHLGVDEEQLLFGAGLDEVIQM 96 (359)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHHHH-h--h-----cC-CCCcHHHHHH----HHHHHhCCCHHHEEECCCHHHHHHH
Confidence 557788887665 33488887776532 1 1 11 1223445655 777778876 456666588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|++..+.++. ........|..+. .++.+ ++.+|++.+++.+.+ +++++++++++|| ...+
T Consensus 97 ~~~~~~~~gd~v~~~~p~y~~---~~~~~~~~g~~~~--~~~~~-~~~~d~~~l~~~~~~-~~~~v~i~~p~NPtG~~~~ 169 (359)
T PRK03158 97 ISRALLNPGTNTVMAEPTFSQ---YRHNAIIEGAEVR--EVPLK-DGGHDLEAMLKAIDE-QTKIVWICNPNNPTGTYVN 169 (359)
T ss_pred HHHHHhCCCCEEEEcCCCHHH---HHHHHHHcCCeEE--EEecC-CCCcCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCC
Confidence 999999999999977755543 3334455676444 44554 567899999988765 4566665566666 4447
Q ss_pred HHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 183 FERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 183 l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
.++|.++++. +|++||+||+|....+... .+..+. ...++++||||.+ |++| ||+++++++++.+...
T Consensus 170 ~~~l~~~~~~~~~~~~ii~De~y~~~~~~~~-~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~v~~~~~~~~~~~~ 247 (359)
T PRK03158 170 HEELLSFLESVPSHVLVVLDEAYYEYVTAED-YPDTLPLLEKYENLIVLRTFSKAY-GLAALRVGYGIASEELIEKLNIA 247 (359)
T ss_pred HHHHHHHHHhCCCCcEEEEECchHhhcCCcc-cccHHHHHHhcCCEEEEEechHhh-cCcchhhehhcCCHHHHHHHHHh
Confidence 8888888876 5999999999976543221 111111 1358889999999 7677 9999999999888765
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
...+ + .+.+.+.++..++.+ .++.+..++.+.++++++.+.|.+.|+.+. ++.++++|+.++. .+.+++..
T Consensus 248 ~~~~--~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~g~~i~~~~~~--~~~~~~~~ 318 (359)
T PRK03158 248 RPPF--N-TTRIAQYAAIAALED--QAFLKECVEKNAEGLEQYYAFCKEYGLFYY--PSQTNFIFVDTGR--DANELFEA 318 (359)
T ss_pred cCCC--C-CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCCCeeC--CCcCcEEEEECCC--CHHHHHHH
Confidence 4332 2 334455555444432 235667777788888889999988887764 3456789988742 34566766
Q ss_pred HHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+++ +||.+.++..++. .+++|++++.
T Consensus 319 l~~-~gv~v~~g~~f~~------~~~iRi~~~~ 344 (359)
T PRK03158 319 LLK-KGYIVRSGAALGF------PTGVRITIGL 344 (359)
T ss_pred HHH-CCeEEeeCCCCCC------CCeEEEecCC
Confidence 664 6999998765542 2469999874
No 222
>PRK07568 aspartate aminotransferase; Provisional
Probab=99.79 E-value=3.1e-17 Score=198.63 Aligned_cols=318 Identities=15% Similarity=0.127 Sum_probs=199.3
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCHHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sGs~A~ 102 (1342)
..+.+..+.+. .++.+.+++.+... . . ..|+...+..++++++++++.. .| .+ +.+++++||++|+
T Consensus 31 ~~i~l~~~~~~~~~~~~~~~a~~~~~~-~-~------~~Y~~~~g~~~lr~~ia~~~~~-~~~~~~~~~i~~t~G~~~al 101 (397)
T PRK07568 31 KVYHLNIGQPDIKTPEVFFEAIKNYDE-E-V------LAYSHSQGIPELREAFAKYYKK-WGIDVEPDEILITNGGSEAI 101 (397)
T ss_pred CEEEecCCCCCCCCCHHHHHHHHHHhc-C-C------cCcCCCCCCHHHHHHHHHHHHH-hCCCCCcceEEEcCChHHHH
Confidence 34667766653 34457777655432 1 1 1233445556788866666652 23 22 4455665899999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCC-CCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~-id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
..++.+++++||+|+++++.++.+ .......|..+..++.+.+.++. .+++.+++.+++. ++++++++++|| +.
T Consensus 102 ~~~~~~l~~~gd~Vl~~~p~y~~~---~~~~~~~g~~~~~v~~~~~~g~~~~~~~~l~~~~~~~-~~~v~i~~p~NPtG~ 177 (397)
T PRK07568 102 LFAMMAICDPGDEILVPEPFYANY---NGFATSAGVKIVPVTTKIEEGFHLPSKEEIEKLITPK-TKAILISNPGNPTGV 177 (397)
T ss_pred HHHHHHhcCCCCEEEEecCCCccH---HHHHHHcCCEEEEeecCcccCCCCCCHHHHHHhcCcc-ceEEEEECCCCCCCc
Confidence 999999999999999877555433 33345667644444332222333 3678999888654 455555455555 22
Q ss_pred ----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-----CcEEEecCCccCCCCCe---eEEEEe-chhHH
Q psy13354 181 ----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-----ADFITSTTHKSLRGPRG---GFILMK-KKYKK 247 (1342)
Q Consensus 181 ----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-----~Divv~S~sK~l~gp~G---G~iv~~-~~l~~ 247 (1342)
.++++|+++|+++|++||+|++|....+....+.+.... ..+++.|+||.+ |+.| ||++++ +++++
T Consensus 178 ~~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~-~~~G~R~G~~~~~~~~~~~ 256 (397)
T PRK07568 178 VYTKEELEMLAEIAKKHDLFLISDEVYREFVYDGLKYTSALSLEGLEDRVIIIDSVSKRY-SACGARIGCLISKNKELIA 256 (397)
T ss_pred cCCHHHHHHHHHHHHHCCcEEEEeccchhcccCCCCccChhhcCCCcCCEEEEecchhhc-cCCCcceEEEecCCHHHHH
Confidence 258999999999999999999987544322222222211 237889999999 5555 999985 57777
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
.+...... .. +++...+.++..++. ..+.++++.++.+.++++.+.+.|.+. ++.+. .+.+++++|+.++.. .+
T Consensus 257 ~~~~~~~~-~~-~~s~~~q~~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~p~g~~~~~~~l~~~-~~ 331 (397)
T PRK07568 257 AAMKLCQA-RL-SPPTLEQIGAAALLD-TPESYFDEVREEYKKRRDILYEELNKIPGVVCE-KPKGAFYIIAKLPVD-DA 331 (397)
T ss_pred HHHHHhhc-cC-CCCcHHHHHHHHHhh-CCHHHHHHHHHHHHHHHHHHHHHHhcCCCceec-CCCcceEEEEecCCC-CH
Confidence 66543222 12 223444554444443 223467778888999999999999886 55543 356678899998753 34
Q ss_pred HHHHHHHHHH-----CCceeeeccCCCCCCCccccccccccccc
Q psy13354 327 GKIAESILES-----ANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 327 ~~~~~~ll~~-----~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++...++++ .||.+.|+..+....+ ...+++|++++.
T Consensus 332 ~~~~~~l~~~~~~~~~gv~v~pg~~f~~~~~-~~~~~iRls~~~ 374 (397)
T PRK07568 332 EDFAKWLLTDFNYNGETVMVAPASGFYATPG-LGKNEIRIAYVL 374 (397)
T ss_pred HHHHHHHHhhcccccceEEEeCchHhcCCCC-CCCCeEEEEEeC
Confidence 5677777764 5999998765532111 113579999863
No 223
>PRK05839 hypothetical protein; Provisional
Probab=99.79 E-value=2.6e-17 Score=197.12 Aligned_cols=305 Identities=13% Similarity=0.051 Sum_probs=196.4
Q ss_pred CceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~A~ 102 (1342)
..+.+..+++..++ .+.+++.+... . ...|....+..++++++++++++.+|. + +.+++++|+++|+
T Consensus 25 ~~i~l~~~~p~~~~~~~~~~a~~~~~~-~-------~~~Y~~~~G~~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al 96 (374)
T PRK05839 25 KGLDLTIGEPQFETPKFIQDALKNNAH-L-------LNKYPKSAGEESLREAQRGFFKRRFKIELKENELIPTFGTREVL 96 (374)
T ss_pred CeEEcCCCCCCCCCCHHHHHHHHHHhh-c-------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHH
Confidence 55777777654433 36666554331 1 122444555668899888898888773 3 4455554667788
Q ss_pred HHHHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 103 QAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 103 ~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
..++.+++ .+||.|+++.+.++.+ ...+...|. ++++++.+ +++.+|++..+ + .+++++++++++||
T Consensus 97 ~~~~~~~~~~~~gd~vlv~~P~y~~~---~~~~~~~g~--~v~~v~~~~~~~~~~d~~~~~--~--~~~k~v~i~nP~NP 167 (374)
T PRK05839 97 FNFPQFVLFDKQNPTIAYPNPFYQIY---EGAAIASRA--KVLLMPLTKENDFTPSLNEKE--L--QEVDLVILNSPNNP 167 (374)
T ss_pred HHHHHHHhcCCCCCEEEECCCCchhh---HHHHHhcCC--EEEEeecccccCCcCCcchhh--h--ccccEEEEeCCCCC
Confidence 88888764 5799999776555443 444456676 44555554 34666654432 2 24667777777777
Q ss_pred -----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----------CCcEEEecCCccCCCCCe---eEEE
Q psy13354 179 -----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----------FADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 179 -----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----------~~Divv~S~sK~l~gp~G---G~iv 240 (1342)
....+++|+++|+++|++||+||+|..... ....++... ..-++++||||.| +.+| ||++
T Consensus 168 TG~~~s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~~-~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~ii 245 (374)
T PRK05839 168 TGRTLSLEELIEWVKLALKHDFILINDECYSEIYE-NTPPPSLLEASILVGNESFKNVLVINSISKRS-SAPGLRSGFIA 245 (374)
T ss_pred cCcccCHHHHHHHHHHHHHcCCEEEeccchhhccc-CCCCCCHhhhhcccCccccCcEEEEecccccc-CCccceeEEEe
Confidence 333688999999999999999999875322 212221111 1237789999998 5666 9999
Q ss_pred EechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEc
Q psy13354 241 MKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 241 ~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~ 320 (1342)
+++++++.+.........+ .+.+.+.++..++.. ..++++.++++.++++.+.+.| ++. .+.+++++|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~l---~~~---~p~gg~fi~~~~ 316 (374)
T PRK05839 246 GDASILKKYKAYRTYLGCA-SPLPLQKAAAVAWLD--DEHAEFFRNIYAKNLKLAREIL---GIT---IPPATFYVWLPV 316 (374)
T ss_pred cCHHHHHHHHHHHhhcCCC-CChHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHHHhc---CCC---CCCeeEEEEEeC
Confidence 9998888876543222222 234444444444432 3467777888888888877765 333 356789999998
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++ +.+++..+++++||.+.++..++.+.. ..+++|++++.
T Consensus 317 ~~---~~~~~~~l~~~~gi~v~pg~~f~~~~~--~~~~iRis~~~ 356 (374)
T PRK05839 317 DN---DEEFTKKLYQNEGIKVLPGSFLGRNGI--GKGYVRIALVY 356 (374)
T ss_pred CC---hHHHHHHHHHHCCEEEeCchhhCCCCC--CCCeEEEEecC
Confidence 63 457888888778999998765543211 14689999864
No 224
>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase. This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).
Probab=99.79 E-value=7.1e-18 Score=205.06 Aligned_cols=315 Identities=15% Similarity=0.120 Sum_probs=197.1
Q ss_pred ceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC---CC---ceEecCCHHHH
Q psy13354 29 NIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA---EA---ANVQPHSGSQA 101 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~---~~---~vi~~~sGs~A 101 (1342)
.+.+..++ ++.+++.++++.+.+.. .+|+ .........++.+.+++.+.++. +. .++.++||++|
T Consensus 96 ~i~l~~g~p~~~~~~~~~~~~~~~~~---~~Y~-----~p~g~~~~~e~iv~~y~~~~~~~~~~~~~~~~V~it~Gat~a 167 (521)
T TIGR03801 96 IISYVIDQLGFDPDAFLYEMCDGIIG---DNYP-----VPDRMLPHSEKIVHQYLIQEMCGNKPPPGEFDLFAVEGGTAA 167 (521)
T ss_pred HHhhcCCCCCCCCCHHHHHHHHHhhc---CCCC-----CCCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHH
Confidence 36666665 34444566666666531 1121 11222234444444555554332 22 46666688999
Q ss_pred HHHHHHH-----ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--C-----CCCCHHHHHHHHHhcCCeE
Q psy13354 102 NQAVFFS-----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--K-----EKIDYKKVEYLAKKNKPKL 169 (1342)
Q Consensus 102 ~~~al~a-----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~-----~~id~e~Le~~i~~~~~~l 169 (1342)
+..++.+ ++.|||+|+++.+.++.+ ...+...+.+.++++++.++ + |.+|++++++++++ ++++
T Consensus 168 l~~~~~~l~~~~ll~pGD~Vlv~~P~y~~y---~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~~d~~~l~~~~~~-~~ka 243 (521)
T TIGR03801 168 MCYIFDSLKANELLKKGDKIALMTPIFTPY---LEIPELPRYDFEVVRIKADEMTEDGTHTWQYPDKELEKLRDP-SIKA 243 (521)
T ss_pred HHHHHHHHhHhhcCCCCCEEEEeCCCcHHH---HHHHHHhcCCcEEEEeecccccccccccCCCCHHHHHHhcCC-CCcE
Confidence 9998887 789999999877655544 33444554445666666542 2 88999999987654 4566
Q ss_pred EEEcCCCCC-----cccCHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCccCCCCCe---
Q psy13354 170 IIAGASAYS-----QYIDFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 170 iv~~~s~~~-----~~~~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK~l~gp~G--- 236 (1342)
+++++|+|| +...+++|+++|++| +++||+||+|+.... .+.+... ...+++.|+||+| |.+|
T Consensus 244 i~l~nP~NPTG~vls~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~---~~~sl~~~~~~~vI~v~SfSK~f-g~~G~Rl 319 (521)
T TIGR03801 244 LFVVNPSNPPSVAMSDESIEKIVDIVANDRPDLMILTDDVYGTFVD---DFRSLFAELPYNTIGVYSFSKYF-GATGWRL 319 (521)
T ss_pred EEEeCCCCCCCCCCCHHHHHHHHHHHHhcCCCeEEEECCCchhhcc---cccchhhhCCCCEEEEEcchhhc-cCchhhh
Confidence 555555566 223588999999987 999999999975332 1222221 1358899999999 7778
Q ss_pred eEEEEech-----hHH--------HHhh-----------------------ccCCccccCCcHHHHH--H--HHHHHHHh
Q psy13354 237 GFILMKKK-----YKK--------IINS-----------------------AVFPGIQGGPLMHVIA--A--KAVAFKEV 276 (1342)
Q Consensus 237 G~iv~~~~-----l~~--------~l~~-----------------------~~~~~~~~~~~~~~~~--A--aa~al~~~ 276 (1342)
||++++++ +++ .+.. ....+...+...+.+. | ++.++.+.
T Consensus 320 G~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s~p~Q~q~al~a~~all~~ 399 (521)
T TIGR03801 320 GTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALMDK 399 (521)
T ss_pred hhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHhcc
Confidence 99999864 221 1110 0011112223344444 3 22233333
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhCCcEEe-eCCCCCeEEEEEccCCC----------------CCHHHHHHHHHHCCc
Q psy13354 277 LKPDFKIYQKQVVKNAKILSKILDQRGIRIV-SGGTKSHIILVDLRNKK----------------ITGKIAESILESANI 339 (1342)
Q Consensus 277 l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~-~~~~~~~~v~i~~~~~~----------------~~~~~~~~ll~~~GI 339 (1342)
...+.+..++.+.++++.+.+.| |+.+. .++.+++++|++++... .+.+++.+|+++.||
T Consensus 400 ~~~y~~~~~~~~~~R~~~l~~~L---g~~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~~~~~~~~~~~L~~e~gV 476 (521)
T TIGR03801 400 ENAYKAETKDICRRREKLLFRGL---GLPLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKKNYSPVDVLFRLAEETGI 476 (521)
T ss_pred chhHHHHHHHHHHHHHHHHHHhc---CCCCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhccCCHHHHHHHHHHhCCE
Confidence 33467777888888888888887 55432 23566799999997421 356899999999999
Q ss_pred eeeeccCCCCCCCccccccccccccccc
Q psy13354 340 ICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 340 ~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
.+.|+..++.+. +++|++++..+
T Consensus 477 ~v~PG~~Fg~~~-----~~vRisla~l~ 499 (521)
T TIGR03801 477 VLLPGGGFGGPE-----WSVRVSLANLN 499 (521)
T ss_pred EEeCchhcCCCC-----CeEEEEecCCC
Confidence 999987776532 46999997643
No 225
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=99.79 E-value=1.6e-17 Score=197.72 Aligned_cols=305 Identities=10% Similarity=0.062 Sum_probs=189.2
Q ss_pred cCceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.+.+..++|++++ .+++++.+.+.. . ..|+ . ....++++ .++++++.+ +.+++++|+++++.
T Consensus 20 ~~~i~l~~~~~~~~~p~~~~~a~~~~~~~-~-~~y~------~-~~~~~lr~----~ia~~~~~~~~~i~it~Ga~~~l~ 86 (356)
T PRK08056 20 DQLLDFSANINPLGMPVSLKRAIIDNLDC-A-ERYP------D-VEYRHLHQ----ALARHHQVPASWILAGNGETESIF 86 (356)
T ss_pred hhEEEeccccCCCCCCHHHHHHHHHHHHh-c-ccCc------C-ccHHHHHH----HHHHHhCcChhhEEECCCHHHHHH
Confidence 345888888877544 488888776642 1 1222 1 12334444 778888876 45555657788999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-ccc-
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYI- 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~- 181 (1342)
.++.++ .+|+ +++.. +++..+...+...|..+..+++..++++.+| +++.+.+. .+++++++++++|| +..
T Consensus 87 ~~~~~l-~~g~-viv~~---P~y~~~~~~~~~~g~~~~~v~~~~~~~~~~~-~~~~~~~~-~~~k~v~l~~p~NPTG~~~ 159 (356)
T PRK08056 87 AVVSGL-KPRR-AMIVT---PGFAEYRRALQQVGCEIRRYSLREADGWQLT-DAILEALT-PDLDCLFLCTPNNPTGLLP 159 (356)
T ss_pred HHHHHh-CCCC-EEEeC---CCcHHHHHHHHHcCCeEEEEecccccCCCcc-HHHHHhcc-CCCCEEEEeCCcCCCCCCC
Confidence 888876 6787 45444 3343344455667774444433222345556 34555555 34566666666666 222
Q ss_pred C---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEe-chhHHHHhhc
Q psy13354 182 D---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMK-KKYKKIINSA 252 (1342)
Q Consensus 182 ~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~-~~l~~~l~~~ 252 (1342)
+ +++|+++|+++|++||+|++|.........+.+.+. ..+++++|+||++ |++| ||++++ +++++.+...
T Consensus 160 ~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~RiG~~v~~~~~~~~~l~~~ 238 (356)
T PRK08056 160 ERQLLQAIAERCKSLNIALILDEAFIDFIPDETGFIPQLADNPHLWVLRSLTKFY-AIPGLRLGYLVNSDDAAVARMRRQ 238 (356)
T ss_pred CHHHHHHHHHHHHhcCCEEEEecchhccCCcchHHHHHhccCCCEEEEEechhhc-cCcchhheeeecCCHHHHHHHHHh
Confidence 4 889999999999999999998643321111111111 1468899999999 7777 999985 5677777653
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...+ +.+...+.++..++ +. ..+.++.++.+.++++++.+.|++. ++.+. +++++++|+.++.. +.+++.
T Consensus 239 ~~~~---~~~~~~~~~a~~~l-~~-~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~ 309 (356)
T PRK08056 239 QMPW---SINAFAALAGEVIL-QD-RAYQQATWQWLAEEGARFYQALCALPLLTVW--PGRANYLFLRCERP--DIDLQR 309 (356)
T ss_pred CCCC---chhHHHHHHHHHHh-CC-HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEc--CCCCcEEEEEcCCC--hHHHHH
Confidence 3222 22223333333232 21 2356667788899999999999886 66653 34678899988642 456666
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
.+++ +||.+.++..+.... .+++|++++..
T Consensus 310 ~l~~-~gI~v~~~~~f~~~~----~~~iRis~~~~ 339 (356)
T PRK08056 310 ALLT-QRILIRSCANYPGLD----SRYYRVAIRSA 339 (356)
T ss_pred HHHH-CCeEEEECCCCCCCC----CCEEEEEEcCH
Confidence 6664 699999876542111 35799998753
No 226
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=99.79 E-value=3.4e-17 Score=197.13 Aligned_cols=324 Identities=18% Similarity=0.177 Sum_probs=211.0
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--CCceEecCCHHHHHHHHHHHcc
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--EAANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~~~vi~~~sGs~A~~~al~al~ 110 (1342)
.++..+.++.|++++.+.+.+.+ +++++.+..+......+++ +++.+.+.++. ++.+++++|+++++..++.++.
T Consensus 5 ~aa~~~~~~~v~~~~~~~~~~~~--~n~~~~~~~~~~~~~~l~~-a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~ 81 (382)
T TIGR03403 5 NNATTMLDPKVKELMDPFFCDIY--GNPNSLHQFGTATHPAIAE-ALDKLYKGINARDLDDIIITSCATESNNWVLKGVY 81 (382)
T ss_pred CcCCCCCCHHHHHHHHHHHHhcC--cCCccccHHHHHHHHHHHH-HHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHH
Confidence 34566788889999888876444 3343322222344556666 44445556665 3566777688999999888762
Q ss_pred -----CC-CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 111 -----NP-GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 111 -----~p-GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
.+ +|+|+++..+++++...+..+...|.. ++.++.++++.+|++++++.+.+. +++++++.++++ ...|
T Consensus 82 ~~~~~~~~~~~vi~~~~e~ps~~~~~~~~~~~G~~--v~~v~~~~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~ 158 (382)
T TIGR03403 82 FDEILKGGKNHIITTEVEHPAVRATCAFLESLGVE--VTYLPINEQGTITAEQVREAITEK-TALVSVMWANNETGMIFP 158 (382)
T ss_pred HhhcccCCCCEEEEcCCccHHHHHHHHHHHHCCCE--EEEEecCCCCCCCHHHHHHhcccC-CeEEEEEcccCCCccccC
Confidence 45 478998888888776666656666774 444566667889999999998764 455555544444 4459
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhH--HHHh--hccCCc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYK--KIIN--SAVFPG 256 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~--~~l~--~~~~~~ 256 (1342)
+++|.++|+++|+++++|++|+.|... ..... .+|++++|+|||+ ||.| |+++.++.+. ..+. ......
T Consensus 159 ~~~I~~la~~~g~~~ivD~a~~~g~~~----~~~~~~~~D~~~~s~~K~~-gp~G~g~l~vr~~~~~~p~~~g~~~~~~~ 233 (382)
T TIGR03403 159 IKEIGEICKERGVLFHTDAVQAIGKIP----VDVQKAGVDFLSFSAHKFH-GPKGVGGLYIRKGVELTPLFHGGEHMGGR 233 (382)
T ss_pred HHHHHHHHHHcCCEEEEechhhcCCCc----cCccccCCCEEEEcchhhC-CCCceEEEEECCCCCCCCcccCCCCCCCc
Confidence 999999999999999999998876541 11111 3799999999987 8998 9998876531 1110 000112
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC--CCeEEEEEccCCCCCHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT--KSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
..++++.+.+.++..++....+ ..+...+++.+.++++.+.|.+. ++.+..+.. ..+++.+.++.. .+..+...
T Consensus 234 ~~gt~~~~~~~al~~al~~~~~-~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~- 310 (382)
T TIGR03403 234 RSGTLNVPYIVAMGEAMRLANE-YLDFEKSHVRRLRDRLEDALLELPDVFVVGDREHRVPNTILISIKGV-EGEAMLWD- 310 (382)
T ss_pred ccCCcChHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCCCCcCCEEEEEeCCC-CHHHHHHh-
Confidence 2456767777777777665443 56777788999999999999874 677654221 134556666532 23344444
Q ss_pred HHHCCceeeeccC---CCCCC----------Ccccccccccccccccccc
Q psy13354 334 LESANIICNKNSI---PNDPE----------KPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 334 l~~~GI~v~~~~~---p~~~~----------~~~~~~~lRi~~~~~~t~~ 370 (1342)
|.++||.++.+.. ..... .....+.+|+|++.++|.+
T Consensus 311 L~~~gI~v~~g~~c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~ 360 (382)
T TIGR03403 311 LNKAGIAASTGSACASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEE 360 (382)
T ss_pred hccCCEEEEchhccCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHH
Confidence 6677999996421 11100 0111246999999987753
No 227
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=99.78 E-value=2.8e-17 Score=196.80 Aligned_cols=303 Identities=15% Similarity=0.140 Sum_probs=202.1
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.+.+..++|++ ++.+++++.+.+.. . ..|+. .. ..++++ .+++++|.+ +.+++++|+++++.
T Consensus 32 ~~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~~------~~-~~~lr~----~ia~~~~~~~~~i~~t~G~~~~l~ 98 (367)
T PRK02731 32 ADIIKLASNENPLGPSPKAIEAIRAAADE-L-HRYPD------GS-GFELKA----ALAEKFGVDPERIILGNGSDEILE 98 (367)
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh-h-cCCCC------Cc-HHHHHH----HHHHHhCcCHHHEEEcCCHHHHHH
Confidence 4568888877664 34488887776632 2 12221 11 234555 788888876 45666657777888
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|++..+.++. ........|. +++.++. +++.+|++.+++.+++ ++++++++++++| ...
T Consensus 99 ~~~~~l~~~gd~vl~~~p~y~~---~~~~~~~~g~--~~~~~~~-~~~~~~~~~l~~~~~~-~~~~v~l~~p~nptG~~~ 171 (367)
T PRK02731 99 LLARAYLGPGDEVIYSEHGFAV---YPIAAQAVGA--KPVEVPA-KDYGHDLDAMLAAVTP-RTRLVFIANPNNPTGTYL 171 (367)
T ss_pred HHHHHhcCCCCEEEEecCCHHH---HHHHHHHcCC--eEEEecc-cCCCCCHHHHHHHhCC-CCcEEEEeCCCCCCCcCC
Confidence 8889999999999987655432 2333455666 4455555 4577899999998864 5667666666666 444
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCC--CCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPN--PVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~--~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
+.++|.++|+.+ |++||+|++|............ ..+ ...++++|+||.+ |..| ||+++++++++.+...
T Consensus 172 ~~~~l~~l~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~~~~~l~~~ 250 (367)
T PRK02731 172 PAEEVERFLAGVPPDVLVVLDEAYAEYVRRKDYEDGLELVAKFPNVVVTRTFSKAY-GLAGLRVGYGIAPPEIIDALNRV 250 (367)
T ss_pred CHHHHHHHHHhCCCCcEEEEECcHHHhccCcCcccHHHHHhhcCCEEEEeeehHhh-cCcccceeeeeCCHHHHHHHHHc
Confidence 888888888875 8999999998765432211111 011 1247788999998 6566 9999999998888765
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
..++.. +.+.+.++...+. . ..+.++.++.+.++++.+.+.|++.|+.+. +..++++|+.++....+.++...
T Consensus 251 ~~~~~~---~~~~~~~a~~~l~-~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~g~~~~i~~~~~~~~~~~~~~ 323 (367)
T PRK02731 251 RQPFNV---NSLALAAAVAALD-D-DAFVEKSRALNAEGMAWLTEFLAELGLEYI--PSVGNFILVDFDDGKDAAEAYQA 323 (367)
T ss_pred cCCCCC---CHHHHHHHHHHhC-C-HHHHHHHHHHHHHHHHHHHHHHHHCCCccC--CCCceEEEEECCCCCCHHHHHHH
Confidence 443322 2344444433332 2 235677788888999999999998887764 34578999998654445566666
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+. ++||.+.+...++. ++++|++++
T Consensus 324 L~-~~gI~v~~~~~~~~------~~~iRis~~ 348 (367)
T PRK02731 324 LL-KRGVIVRPVAGYGL------PNALRITIG 348 (367)
T ss_pred HH-HCCEEEEeCCCCCC------CCeEEEecC
Confidence 55 56999998654432 346999986
No 228
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=99.78 E-value=3.9e-17 Score=195.30 Aligned_cols=302 Identities=12% Similarity=0.089 Sum_probs=197.4
Q ss_pred ceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHH
Q psy13354 29 NIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~a 105 (1342)
.+.|..|++.+++ .+.+++.+...... +|+ .. ...++++ .++++++.+ +.+++++|+++++..+
T Consensus 34 ~~~l~~~~~~~~~~~~~~~a~~~~~~~~~--~Y~------~~-~~~~Lr~----~ia~~~~~~~~~I~it~G~~~~l~~~ 100 (369)
T PRK08153 34 RARIGANESGFGPSPSVIAAMREAAAEIW--KYG------DP-ENHDLRH----ALAAHHGVAPENIMVGEGIDGLLGLI 100 (369)
T ss_pred eeEecCCCCCCCCCHHHHHHHHHHHHHhh--cCC------CC-ccHHHHH----HHHHHhCCCHHHEEEcCCHHHHHHHH
Confidence 3688888876544 38888877653211 222 11 1335555 777788876 5666665777799999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.++++|||.|++..+.|+.+ .......|. +++.++.+.+ .+|++++.+.+...+++++++++++|| ...+.
T Consensus 101 ~~~~~~~gd~vlv~~p~y~~~---~~~~~~~g~--~~~~vp~~~~-~~~~~~l~~~~~~~~~~~i~l~~P~NPtG~~~~~ 174 (369)
T PRK08153 101 VRLYVEPGDPVVTSLGAYPTF---NYHVAGFGG--RLVTVPYRDD-REDLDALLDAARRENAPLVYLANPDNPMGSWHPA 174 (369)
T ss_pred HHHhcCCCCEEEECCCcchHH---HHHHHHcCC--eEEEeeCCCC-CCCHHHHHHHhcccCCcEEEEeCCCCCCCCCCCH
Confidence 999999999999766555443 334455666 4555565544 479999988776556778877777777 33366
Q ss_pred HHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCC--CCCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 184 ERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNP--VPFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 184 ~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~--l~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+++.++++. +|++||+||+|..... .+..... .....++++||||.+ |.+| ||+++++++++.+......+
T Consensus 175 ~~l~~l~~~~~~~~~lI~DE~y~~~~~-~~~~~~~~~~~~~~i~~~SfSK~~-g~~GlRiG~~v~~~~~~~~l~~~~~~~ 252 (369)
T PRK08153 175 ADIVAFIEALPETTLLVLDEAYCETAP-AGAAPPIDTDDPNVIRMRTFSKAY-GLAGARVGYAIGAPGTIKAFDKVRNHF 252 (369)
T ss_pred HHHHHHHHhCCCCcEEEEeCchhhhcC-cccchhhhhcCCCEEEEecchHhc-cCcchheeeeecCHHHHHHHHHhhcCC
Confidence 555555544 3899999999875432 1211111 111247899999999 6667 99999999988887644332
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-CCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK-ITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~-~~~~~~~~ll~ 335 (1342)
+.+.+.+.++..++. . .++.+..++.+.++++++.+.|++.|+.+. +..++++|++++... ...++..+++
T Consensus 253 ---~~s~~~q~~~~~~l~-~-~~~~~~~~~~~~~~r~~~~~~L~~~g~~~~--p~~~~f~~~~~~~~~~~a~~l~~~l~- 324 (369)
T PRK08153 253 ---GMNRIAQAAALAALK-D-QAYLAEVVGKIAAARDRIAAIARANGLTPL--PSATNFVAIDCGRDGAFARAVLDGLI- 324 (369)
T ss_pred ---CCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHHHHHCCCccC--CCcCcEEEEECCCCcccHHHHHHHHH-
Confidence 233555555555543 2 246777788889999999999998887643 467889999876332 2345555555
Q ss_pred HCCceeeeccCCCCCCCccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++||.+.. |+... ..+++|++++.
T Consensus 325 ~~Gi~v~~---p~~~~---~~~~iRis~~~ 348 (369)
T PRK08153 325 ARDIFVRM---PGVAP---LDRCIRVSCGP 348 (369)
T ss_pred HCCeEEee---CCCCC---CCCeEEEecCC
Confidence 46999953 22211 13579999874
No 229
>PRK09105 putative aminotransferase; Provisional
Probab=99.78 E-value=3.2e-17 Score=195.80 Aligned_cols=295 Identities=13% Similarity=0.070 Sum_probs=195.1
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+++.+ ++.+.+++.+.+.. . .. |+.. ...++++ .+++++|.+ +.+++++|+++++..
T Consensus 44 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~------Y~~~-~~~~Lr~----aia~~~~v~~e~I~it~Gs~~ai~~ 110 (370)
T PRK09105 44 GAVFLNANECPLGPSPAARDAAARSAAL-S-GR------YDLE-LEDDLRT----LFAAQEGLPADHVMAYAGSSEPLNY 110 (370)
T ss_pred CcEEecCCCCCCCCCHHHHHHHHHHHHH-h-cC------CCCc-hHHHHHH----HHHHHhCcChhhEEEcCChHHHHHH
Confidence 457788888754 44488888776631 1 11 2221 1345555 777888876 455566588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|+++++.|+. +.......|. +++.++.++++.+|++.+++. . .+++++++++++|| ...+
T Consensus 111 ~~~~l~~~gd~Vli~~P~y~~---~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~-~-~~~~~v~l~nP~NPTG~~~~ 183 (370)
T PRK09105 111 AVLAFTSPTAGLVTADPTYEA---GWRAADAQGA--PVAKVPLRADGAHDVKAMLAA-D-PNAGLIYICNPNNPTGTVTP 183 (370)
T ss_pred HHHHHcCCCCEEEEeCCChHH---HHHHHHHcCC--eEEEecCCCCCCCCHHHHHhc-C-CCCCEEEEeCCCCCCCcCcC
Confidence 999999999999987755544 4445566676 555556666788999999876 3 34566666666776 3336
Q ss_pred HHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC----CC-cEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 183 FERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP----FA-DFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 183 l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~----~~-Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
.++|.++++. +|++||+||+|.... .. ++..+ .. .++++||||++ |+.| ||+++++++++.+...
T Consensus 184 ~~~l~~l~~~~~~~~~lIvDEaY~~f~--~~--~s~~~~~~~~~~vi~~~SfSK~~-g~~GlRiG~~v~~~~~i~~l~~~ 258 (370)
T PRK09105 184 RADIEWLLANKPAGSVLLVDEAYIHFS--DA--PSVVDLVAQRKDLIVLRTFSKLY-GMAGMRLGLAAARPDLLAKLARF 258 (370)
T ss_pred HHHHHHHHHhCCCCcEEEEECchHHhc--cC--cchHHHHhhCCCEEEEecccHhh-cCCccceeeeecCHHHHHHHHhc
Confidence 6666666543 489999999995421 11 11111 12 36778999999 7777 9999999998888764
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
. .+..+.+.+.++..++.+ ..+++..++++.++++++.+.|.+.|+++.. +.+.+++++++ ..+.++...
T Consensus 259 -~---~~~~~~~~~~aa~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~--~~~~f~~~~~~--~~~~~l~~~ 328 (370)
T PRK09105 259 -G---HNPLPVPAAAAGLASLRD--PKLVPQRRAENAAVREDTIAWLKKKGYKCTP--SQANCFMVDVK--RPAKAVADA 328 (370)
T ss_pred -C---CCCcCHHHHHHHHHHHhC--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcCC--CCCcEEEEeCC--CCHHHHHHH
Confidence 2 122344555555544443 2467777889999999999999998887643 33445567664 234567777
Q ss_pred HHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++ ||.+... ++. .++++|++++.
T Consensus 329 L~~~-gI~v~~~-~~~------~~~~~Ris~~~ 353 (370)
T PRK09105 329 MAKQ-GVFIGRS-WPI------WPNWVRVTVGS 353 (370)
T ss_pred HHHC-CcEEecC-CCC------CCCeEEEEcCC
Confidence 7655 9998432 111 13579999884
No 230
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=99.78 E-value=6.4e-17 Score=193.13 Aligned_cols=268 Identities=15% Similarity=0.123 Sum_probs=172.3
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCH
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~ 155 (1342)
.++++.+++++|.++++ +++||++|+..++.+++.|||+|++.. ++|++....+...|+.+..++.+.+.++.+|+
T Consensus 47 ~~l~~~la~~~g~~~i~-~~~g~t~al~~~l~~~~~~gd~Vl~~~---~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~d~ 122 (361)
T cd06452 47 KDFHHDLAEFLGMDEAR-VTPGAREGKFAVMHSLCEKGDWVVVDG---LAHYTSYVAAERAGLNVREVPNTGHPEYHITP 122 (361)
T ss_pred HHHHHHHHHHcCCceEE-EeCCHHHHHHHHHHHhcCCCCEEEEcC---CcchHHHHHHHhcCCEEEEEecCCCCCcccCH
Confidence 33555899999996555 454899999999999999999999765 34444444566777754444333223458999
Q ss_pred HHHHHHHHh------cCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEec
Q psy13354 156 KKVEYLAKK------NKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITST 226 (1342)
Q Consensus 156 e~Le~~i~~------~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S 226 (1342)
+++++.+.+ .+++++++++++++ ...++++|+++|+++|++||+|++|+.|... ..... .+|++++|
T Consensus 123 ~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~~~~i~~~~~~~~~~vivD~a~~~g~~~----~~~~~~~~d~~~~s 198 (361)
T cd06452 123 EGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHDAKKIAKVCHEYGVPLLLNGAYTVGRMP----VSGKELGADFIVGS 198 (361)
T ss_pred HHHHHHHHHHhhccCCCceEEEEECCCCCCeeeccHHHHHHHHHHcCCeEEEECCcccCCcC----CCHHHcCCCEEEec
Confidence 999998864 24667777666655 5569999999999999999999999876431 11111 36899999
Q ss_pred CCccCCCCCe-eEEEEechhHHHHhhccCCccc-------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 227 THKSLRGPRG-GFILMKKKYKKIINSAVFPGIQ-------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 227 ~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~~-------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+||+++++.+ |++++++++++.+.....++.. +++......++..++... .+..+ ...+..++++++.+.
T Consensus 199 ~~K~l~~~~~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~-~~~~~-~~~~~~~~~~~l~~~ 276 (361)
T cd06452 199 GHKSMAASAPIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHV-KERVK-RWDEEVEKARWFVAE 276 (361)
T ss_pred CCccccCCCCeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHH-HHHHH-HHHHHHHHHHHHHHH
Confidence 9999955444 9999999888888654332211 121111222223232222 22333 234445667899999
Q ss_pred HHhC-CcEEee-CCCCCeEEEEEccCC--------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccc
Q psy13354 299 LDQR-GIRIVS-GGTKSHIILVDLRNK--------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363 (1342)
Q Consensus 299 L~~~-g~~~~~-~~~~~~~v~i~~~~~--------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~ 363 (1342)
|.+. |++++. .+...+++.++.+.. ....++...+++ +||.+. .++. ...+|++.
T Consensus 277 L~~l~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~-~gI~~~---~~~~------~~~~ri~~ 341 (361)
T cd06452 277 LEKIEGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKK-RGIHGI---KPGL------TRYFKLST 341 (361)
T ss_pred HhcCCCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHH-cCceEE---cCCC------ceEEEEEe
Confidence 9997 888763 223456666665421 111245566655 599852 1221 23578877
No 231
>PLN02721 threonine aldolase
Probab=99.78 E-value=1.7e-17 Score=197.49 Aligned_cols=308 Identities=19% Similarity=0.171 Sum_probs=186.0
Q ss_pred eeeeecCCCC-cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH
Q psy13354 30 IELIASENYT-SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 30 i~l~a~~n~l-~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a 108 (1342)
+++.++++.. ++.+.+++...- . +.. ..+ ..+...++++ .+++++|.+..++++ +|++++..++.+
T Consensus 8 ~~~~~~~~~~~~~~~~~a~~~~~---~--~~~-~~~--~~~~~~~l~~----~la~~~~~~~~~~~~-~Gs~a~~~~l~~ 74 (353)
T PLN02721 8 VDLRSDTVTKPTDAMRAAMANAE---V--DDD-VLG--YDPTALRLEE----EMAKIFGKEAALFVP-SGTMGNLISVLV 74 (353)
T ss_pred hhhhcccccCCCHHHHHHHHhcc---C--CCc-ccC--CCHHHHHHHH----HHHHHhCCceeEEec-CccHHHHHHHHH
Confidence 5566665444 344777754320 0 111 111 2333455555 889999988776666 889888888888
Q ss_pred ccC-CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh------cCCeEEEEcC-CCCC-c
Q psy13354 109 VLN-PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK------NKPKLIIAGA-SAYS-Q 179 (1342)
Q Consensus 109 l~~-pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~------~~~~liv~~~-s~~~-~ 179 (1342)
++. +||+|++....|......+......|. +++.++.++++.+|++.+++.+++ .+++++++++ ++++ +
T Consensus 75 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G 152 (353)
T PLN02721 75 HCDVRGSEVILGDNSHIHLYENGGISTLGGV--HPRTVKNNEDGTMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGG 152 (353)
T ss_pred HccCCCCeEEEcCccceehhcccchhhhcCc--eeEecCCCcCCCcCHHHHHHHHHhccCCCCCcceEEEEeccccccCC
Confidence 877 999999766543221111113345565 555556677788999999999974 2456666644 4554 2
Q ss_pred c-c---CHHHHHHHHHHcCCEEEEEcccchhhhh-cCCCCC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 180 Y-I---DFERFYHIAKNINSYFMVDMAHYAGLIA-AGEYPN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 180 ~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
. . ++++|.++|++||++||+|++|..+... .+.... ....+|+++.|+||+++++.||++++++++++.+....
T Consensus 153 ~~~~~~~l~~l~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~ 232 (353)
T PLN02721 153 RCLSVEYTDKVGELAKRHGLKLHIDGARIFNASVALGVPVHRLVKAADSVSVCLSKGLGAPVGSVIVGSKSFIRKAKRLR 232 (353)
T ss_pred ccccHHHHHHHHHHHHHcCCEEEEEchhhhcchhhhCCCHHHHhhhCCEEEEecccccCCceeeEEecCHHHHHhHHHHH
Confidence 2 2 4889999999999999999998654321 111111 11246888889999996666666778888877755432
Q ss_pred CCccccCCcHHHHHH-HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC--CCCHHH
Q psy13354 254 FPGIQGGPLMHVIAA-KAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK--KITGKI 329 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~A-aa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~--~~~~~~ 329 (1342)
..+..+.......++ +..++.+ ..+ ..++..++++++.+.|++. ++.+...++.++++|+.++.. .....+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~----~~~-~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (353)
T PLN02721 233 KTLGGGMRQVGVLAAAALVALQE----NVP-KLEDDHKKAKLLAEGLNQIKGLRVNVAAVETNIVYFDITDGSRITAEKL 307 (353)
T ss_pred HhcCCCeehhHHHHHHHHHHHHH----HHH-HHHHHHHHHHHHHHHHHhCCCcEEecCCccceEEEEEccCCccccHHHH
Confidence 221111111111221 1222222 222 2344467788999999886 665412234467888888652 234455
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...+. ++||.+.+. . ..++|++++..++
T Consensus 308 ~~~L~-~~gi~v~~~-------~---~~~lR~~~~~~~~ 335 (353)
T PLN02721 308 CKSLE-EHGVLLMPG-------N---SSRIRVVTHHQIS 335 (353)
T ss_pred HHHHH-hCCcEEecC-------C---CceEEEEecCcCC
Confidence 55555 679999864 1 3469999875544
No 232
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=99.78 E-value=4e-17 Score=193.82 Aligned_cols=301 Identities=14% Similarity=0.149 Sum_probs=200.1
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.+..+++.+ +|.+++++.+..... ..|+ ... ..++++ .++++++.+ +.+++++|+++++..
T Consensus 20 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~~--~~y~------~~~-~~~lr~----~ia~~~~~~~~~i~~~~G~~~~l~~ 86 (346)
T TIGR01141 20 EVIKLNSNENPFGPPPKAKEALRAEADKL--HRYP------DPD-PAELKQ----ALADYYGVDPEQILLGNGSDEIIEL 86 (346)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHhHHHh--hcCC------CCC-HHHHHH----HHHHHhCcChHHEEEcCCHHHHHHH
Confidence 557777766443 344888888765311 1222 111 134444 788888865 456666588889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|+++.+.++ .+.......|. +++.++.+++|.+|++.+++.+.+ ++++++++++++| ...+
T Consensus 87 ~~~~l~~~gd~v~~~~p~y~---~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~l~~p~NptG~~~~ 160 (346)
T TIGR01141 87 LIRAFLEPGDAVLVPPPTYS---MYEISAKIHGA--EVVKVPLDEDGQLDLEDILVAIDD-KPKLVFLCSPNNPTGNLLS 160 (346)
T ss_pred HHHHhcCCCCEEEEcCCCHH---HHHHHHHHcCC--eEEEeccCCCCCCCHHHHHHhcCC-CCCEEEEeCCCCCCCCCCC
Confidence 99999999999998775443 23334455666 555566666788999999997754 4566666555555 4448
Q ss_pred HHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 183 FERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 183 l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
++++.++|+.+ |+++|+|++|..... ......... ..+++++|+||++ |+.| ||+++++++.+.+......
T Consensus 161 ~~~~~~l~~~~~~~~~ii~D~~y~~~~~-~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~ 238 (346)
T TIGR01141 161 RSDIEAVLERTPEDALVVVDEAYGEFSG-EPSTLPLLAEYPNLIVLRTLSKAF-GLAGLRIGYAIANAEIIDALNKVRAP 238 (346)
T ss_pred HHHHHHHHHhCCCCcEEEEECchhhhcC-CccHHHHHhhCCCEEEEehhhHhh-hchhhhceeeecCHHHHHHHHhccCC
Confidence 88888888877 999999999873221 111111111 1247789999999 5556 9999999998888764333
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
+ + .+.+.+.++..++ +... ++++.++++.++++++.+.|.+. |+++. +..++++|+.++. .+.++...+.
T Consensus 239 ~--~-~~~~~~~~~~~~l-~~~~-~~~~~~~~~~~~~~~l~~~L~~~~g~~~~--~~~g~~~~~~~~~--~~~~~~~~L~ 309 (346)
T TIGR01141 239 F--N-LSRLAQAAAIAAL-RDDD-FIEKTVEEINAERERLYDGLKKLPGLEVY--PSDANFVLIRFPR--DADALFEALL 309 (346)
T ss_pred C--C-CCHHHHHHHHHHh-CCHH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEC--CCcCCEEEEecCC--CHHHHHHHHH
Confidence 2 2 2244454443333 3222 57778899999999999999987 77753 3457889998875 3456666555
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++||.+.++..++.. .+++|++++
T Consensus 310 -~~gI~v~~g~~f~~~-----~~~iRls~~ 333 (346)
T TIGR01141 310 -EKGIIVRDLNSYPGL-----PNCLRITVG 333 (346)
T ss_pred -HCCeEEEeCCCcCCC-----CCeEEEecC
Confidence 569999987644211 357999976
No 233
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=99.78 E-value=3.9e-17 Score=194.53 Aligned_cols=311 Identities=12% Similarity=0.049 Sum_probs=198.3
Q ss_pred HHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----C
Q psy13354 17 EIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----A 90 (1342)
Q Consensus 17 ~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~ 90 (1342)
....++.......+.+..+++.. ++.+.+++.+... . ..|....+..++++++++++.+.+|.+ +
T Consensus 11 ~~~~~~~~~~~~~i~l~~~~p~~~~~~~~~~~~~~~~~-~--------~~Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~ 81 (357)
T TIGR03539 11 PYKAKAASHPDGIVDLSVGTPVDPVPPLIRAALAAAAD-A--------PGYPQTWGTPELREAIVDWLERRRGVPGLDPT 81 (357)
T ss_pred HHHHHhhhCCCCeEEccCCCCCCCCCHHHHHHHHHHHh-h--------CCCCcccCCHHHHHHHHHHHHHhcCCCCCCcC
Confidence 33333333344557777765433 4457777655431 1 123444555688888888888776543 4
Q ss_pred ceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeE
Q psy13354 91 ANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKL 169 (1342)
Q Consensus 91 ~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~l 169 (1342)
.+++++|+++|+..++.++ +++||.|++..+.++++ ...+...|. +++.++ +++.+. ..++++
T Consensus 82 ~I~it~G~~~~i~~~~~~l~~~~gd~Vl~~~p~y~~~---~~~~~~~g~--~~~~v~-------~~~~l~----~~~~~~ 145 (357)
T TIGR03539 82 AVLPVIGTKELVAWLPTLLGLGPGDTVVIPELAYPTY---EVGALLAGA--TPVAAD-------DPTELD----PVGPDL 145 (357)
T ss_pred eEEEccChHHHHHHHHHHHcCCCCCEEEECCCCcHHH---HHHHHhcCC--EEeccC-------ChhhcC----ccCccE
Confidence 5556657888999988887 79999999776555433 333455666 444432 233322 235667
Q ss_pred EEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--------CCcEEEecCCccCCCCCe
Q psy13354 170 IIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--------FADFITSTTHKSLRGPRG 236 (1342)
Q Consensus 170 iv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--------~~Divv~S~sK~l~gp~G 236 (1342)
+++++++|| ...++++|+++|++||++||+|++|....+. +.....+. ...++++||||.+ +..|
T Consensus 146 v~~~~p~NPtG~~~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~-~~~~~~~~~~~~~~~~~~vi~~~S~SK~~-~~~G 223 (357)
T TIGR03539 146 IWLNSPGNPTGRVLSVDELRAIVAWARERGAVVASDECYLELGWE-GRPVSILDPRVCGGDHTGLLAVHSLSKRS-NLAG 223 (357)
T ss_pred EEEeCCCCCcCccCCHHHHHHHHHHHHHcCeEEEEecchhhhccC-CCCccceecccCCCccccEEEEecccccc-CCCc
Confidence 776666666 2235888999999999999999998643332 11111111 1247889999998 4444
Q ss_pred ---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCC
Q psy13354 237 ---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKS 313 (1342)
Q Consensus 237 ---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~ 313 (1342)
||+++++++++.+........ .+++.+.+.++..++.+ ..+.+..++.+.++++++.+.|.+.|+.+.. +.++
T Consensus 224 ~R~G~~i~~~~~~~~~~~~~~~~~-~~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~L~~~g~~~~~-p~~~ 299 (357)
T TIGR03539 224 YRAGFVAGDPALVAELLTVRKHAG-LMVPAPVQAAMVAALGD--DGHVAEQKARYAARRAQLKPALEKAGFRIDH-SEAG 299 (357)
T ss_pred eeEEEEecCHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHHHHHHHcCCCCcC-CCcc
Confidence 999999988888765433322 23445555555444422 2356667888889999999999988876543 4567
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 314 HIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 314 ~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+++|+.++. ...++.. .+.++||.+.++.+++... .+++|++++.
T Consensus 300 ~~~~~~~~~--~~~~~~~-~l~~~gV~v~pg~~f~~~~----~~~iRis~~~ 344 (357)
T TIGR03539 300 LYLWATRGE--DAWDTVD-RLAELGILVAPGDFYGPAG----SQHVRVALTA 344 (357)
T ss_pred EEEEEECCC--CHHHHHH-HHHhCCEEECCccccCCCC----CCeEEEEecC
Confidence 788888753 2334554 4566799999876654322 4679999976
No 234
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=99.78 E-value=2.6e-17 Score=196.59 Aligned_cols=299 Identities=17% Similarity=0.132 Sum_probs=192.9
Q ss_pred CceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEe-cCCHHHHHH
Q psy13354 28 NNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQ-PHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~-~~sGs~A~~ 103 (1342)
+.+.+..++|++++ .+.+++.+.+.. . ..|+. . ...++++ .+++++|.+ +.+++ ++++++++.
T Consensus 35 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~y~~------~-~~~~lr~----~ia~~~~~~~~~i~~~~~Ga~~~i~ 101 (361)
T PRK00950 35 SIIKLGSNENPLGPSPKAVEAIEKELSK-I-HRYPE------P-DAPELRE----ALSKYTGVPVENIIVGGDGMDEVID 101 (361)
T ss_pred ceEEccCCCCCCCCCHHHHHHHHHHHHh-h-cCCCC------C-CHHHHHH----HHHHHhCCCHHHEEEeCCCHHHHHH
Confidence 55888888776543 477777766542 1 12221 1 1234454 788888876 33444 535566888
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|++..+.++ .........|. +++.++.+++|.+|++++++.+.+ ++++++++++++| ...
T Consensus 102 ~~~~~~~~~gd~vlv~~p~y~---~~~~~~~~~g~--~~~~~~~~~~~~~~~~~l~~~~~~-~~~~v~~~~p~nptG~~~ 175 (361)
T PRK00950 102 TLMRTFIDPGDEVIIPTPTFS---YYEISAKAHGA--KPVYAKREEDFSLDVDSVLNAITE-KTKVIFLCTPNNPTGNLI 175 (361)
T ss_pred HHHHHhcCCCCEEEEcCCChH---HHHHHHHHcCC--EEEEeecCCCCCcCHHHHHHHhcc-CCCEEEEeCCCCCCCCCc
Confidence 888888999999997765443 33334456676 445556666778999999998865 4555555555555 445
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+.++|.++|+++|+++|+|++|.... .......... ..++++||||.+ |.+| ||+++++++++.+.....++
T Consensus 176 ~~~~l~~l~~~~~~~li~De~y~~~~--~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~~~~~~~~~~~~~~~~~~ 252 (361)
T PRK00950 176 PEEDIRKILESTDALVFVDEAYVEFA--EYDYTPLALEYDNLIIGRTFSKVF-GLAGLRIGYGFVPEWLIDYYMRAKTPF 252 (361)
T ss_pred CHHHHHHHHHHCCcEEEEECchhhhC--ccchHHHHHhcCCEEEEEeehHhh-cCchhhcchhcCCHHHHHHHHHhcCCC
Confidence 99999999999999999999996432 1111111111 237789999999 7677 99999999988887654443
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
. .+.+.+.++..++.+ .+++++..+++.++++++.+.|. +.+ .+++++++|+.++. ..+.+++..+++
T Consensus 253 ~---~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~l~---~~~--~~~~~~~i~~~~~~-~~~~~~~~~l~~- 320 (361)
T PRK00950 253 S---LTRLSQAAAIAALSD--KEYIEKSIEHGIKSREYLYNELP---FKV--YPSEANFVLVDVTP-MTAKEFCEELLK- 320 (361)
T ss_pred C---CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHhhcC---eeE--CCCcceEEEEECCC-CCHHHHHHHHHH-
Confidence 2 223444444333322 23456666777777777776665 444 24567899998832 334566666665
Q ss_pred CCceeeeccCCCCCCCcccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+||.+.++..+... ..+++|++++
T Consensus 321 ~gv~v~~~~~f~~~----~~~~lRis~~ 344 (361)
T PRK00950 321 RGVIVRDCTSFRGL----GDYYIRVSIG 344 (361)
T ss_pred CCEEEeeCCccCCC----CCCeEEEECC
Confidence 59999886543221 1357999987
No 235
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.78 E-value=1.1e-17 Score=179.25 Aligned_cols=206 Identities=20% Similarity=0.264 Sum_probs=166.5
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
.-+..||+.|++.+||+++++.|.-.|+ .+....++|||||||.||||+|..+|++++.
T Consensus 16 ~e~~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgv----------------- 78 (332)
T COG2255 16 IERSLRPKTLDEFIGQEKVKEQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGV----------------- 78 (332)
T ss_pred hhcccCcccHHHhcChHHHHHHHHHHHHHHHhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcC-----------------
Confidence 4567899999999999999988866653 3444445899999999999999999999983
Q ss_pred cchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC----------
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP---------- 526 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p---------- 526 (1342)
++....+.......++..++..+ ....|++|||+|.++....+.|...+|+.
T Consensus 79 ------------n~k~tsGp~leK~gDlaaiLt~L------e~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp 140 (332)
T COG2255 79 ------------NLKITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGP 140 (332)
T ss_pred ------------CeEecccccccChhhHHHHHhcC------CcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCC
Confidence 22222222233345666665554 34569999999999999889998888863
Q ss_pred --------CCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHH
Q psy13354 527 --------PKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597 (1342)
Q Consensus 527 --------~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a 597 (1342)
-+...+|.+|++..++..+|++|+ ...++..++.+|+..++.+-+...++.++++++..+|+++.|-+|-+
T Consensus 141 ~Arsv~ldLppFTLIGATTr~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 141 AARSIRLDLPPFTLIGATTRAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRGTPRIA 220 (332)
T ss_pred ccceEeccCCCeeEeeeccccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccCCcHHH
Confidence 145668999999999999999999 78888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhcC----CCCCHHHHHHHh
Q psy13354 598 LSLTDQAINYSS----EKITLNSMQEML 621 (1342)
Q Consensus 598 ~~~L~kl~~~~~----~~It~e~V~~~v 621 (1342)
.++|.+.-.|+. ..|+.+.+.+++
T Consensus 221 nRLLrRVRDfa~V~~~~~I~~~ia~~aL 248 (332)
T COG2255 221 NRLLRRVRDFAQVKGDGDIDRDIADKAL 248 (332)
T ss_pred HHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 999998877763 347766666555
No 236
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=99.78 E-value=1.6e-16 Score=190.66 Aligned_cols=310 Identities=19% Similarity=0.181 Sum_probs=203.6
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC-ceEecCCHHHHHHHHHHHcc
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA-ANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~-~vi~~~sGs~A~~~al~al~ 110 (1342)
+.....+..|.+++++.+.+.... +.+ ..+. ...++++.+++++++++|.+. .++++++|++++..++.++.
T Consensus 25 ~~~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~---~~~~~~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~ 97 (371)
T PRK13520 25 LSSMCTEPHPIARKAHEMFLETNL--GDP--GLFP---GTAKLEEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAAR 97 (371)
T ss_pred eeeeecCchHHHHHHHHHHHhcCC--CCc--ccCc---cHHHHHHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHH
Confidence 444466677778899888775322 222 1222 345666788899999999873 34556599999999887764
Q ss_pred C----CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 111 N----PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 111 ~----pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
. +||+|++.. ++|.+........|..+.. ++.++++.+|++++++.+++.++.++++++++.+ ...|+++
T Consensus 98 ~~~~~~~~~vl~~~---~~h~s~~~~~~~~g~~~~~--v~~~~~~~~d~~~l~~~i~~~~~~vi~~~~~~~tG~~~~l~~ 172 (371)
T PRK13520 98 NLAKAEKPNIVVPE---SAHFSFDKAADMLGVELRR--APLDDDYRVDVKAVEDLIDDNTIGIVGIAGTTELGQVDPIPE 172 (371)
T ss_pred hhccCCCceEEecC---cchHHHHHHHHHcCceEEE--ecCCCCCcCCHHHHHHHHhhCCEEEEEEcCCcCCcccCCHHH
Confidence 3 578999766 4455555555666774444 4666678899999999998765556555543333 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCC----CCCCcEEEecCCccCCCCCe-eEEE-EechhHHHHhhccCCccc-
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNP----VPFADFITSTTHKSLRGPRG-GFIL-MKKKYKKIINSAVFPGIQ- 258 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~----l~~~Divv~S~sK~l~gp~G-G~iv-~~~~l~~~l~~~~~~~~~- 258 (1342)
|.++|+++|+++++|++|+.+.......... ...+|++++|.|||..++.+ |+++ .++++++.+... .++..
T Consensus 173 I~~l~~~~g~~livD~a~~~~~~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~~~G~~~~~~~~~~~~l~~~-~~~~~~ 251 (371)
T PRK13520 173 LSKIALENGIFLHVDAAFGGFVIPFLDDPPNFDFSLPGVDSITIDPHKMGLAPIPAGGILFRDESYLDALAVD-TPYLTS 251 (371)
T ss_pred HHHHHHHcCCCEEEEecchhHHHHhhcCCCCccccCCCCceEEECCccccCccCCceEEEEcCHHHHHhhccc-CccccC
Confidence 9999999999999999998665322111111 12468999999999754433 5455 555676666421 22221
Q ss_pred -------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 259 -------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 259 -------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
+++......++..++.....++++++.++..++++++.+.|.+.|+++... +..+++.+.++ ...++..
T Consensus 252 ~~~~~~~gt~~~~~~~~~~~al~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~v~~~~~---~~~~v~~ 327 (371)
T PRK13520 252 KKQATLTGTRSGAGVAATYAVMKYLGREGYRKVVERCMENTRWLAEELKERGFEPVIE-PVLNIVAFDDP---NPDEVRE 327 (371)
T ss_pred CCCcceEeeccChHHHHHHHHHhhhcHhHHHHHHHHHHHHHHHHHHHHHhCCCEEecC-CCceEEEEecC---CHHHHHH
Confidence 222223444555555544455677888999999999999999889884332 34566777665 2345555
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+.+ +||.+.+... ...+|++++..++
T Consensus 328 ~L~~-~gi~v~~~~~---------~~~iRis~~~~~t 354 (371)
T PRK13520 328 KLRE-RGWRVSVTRC---------PEALRIVCMPHVT 354 (371)
T ss_pred HHHH-CCceeccCCC---------CCEEEEEEECCCC
Confidence 5554 5999875421 2469999887654
No 237
>PRK07908 hypothetical protein; Provisional
Probab=99.77 E-value=1.3e-16 Score=189.66 Aligned_cols=297 Identities=12% Similarity=0.083 Sum_probs=193.5
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.+.+..++|.. ++.+++++.+.+.. . .+| ....+..++++ .+++++|.+ +.+++++|+++|+.
T Consensus 22 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~-~~Y------~~~~g~~~lr~----aia~~~~~~~~~I~it~Ga~~al~ 89 (349)
T PRK07908 22 PGLLDFAVNVRHDTPPEWLRERLAARLGD-L-AAY------PSTEDERRARA----AVAARHGRTPDEVLLLAGAAEGFA 89 (349)
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHhhH-h-hcC------CCccchHHHHH----HHHHHhCcChhhEEECCCHHHHHH
Confidence 4568888888754 33488888877642 1 122 22233445555 777778876 56666668888998
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++. +.+|+ +++.. +++......+...|. +++.++.++++.+|++.+. + +++++++++++|| ...
T Consensus 90 ~~~~--l~~~~-viv~~---P~y~~~~~~~~~~G~--~i~~v~~~~~~~~d~~~l~----~-~~~~i~l~np~NPTG~~~ 156 (349)
T PRK07908 90 LLAR--LRPRR-AAVVH---PSFTEPEAALRAAGI--PVHRVVLDPPFRLDPAAVP----D-DADLVVIGNPTNPTSVLH 156 (349)
T ss_pred HHHh--cCCCe-EEEeC---CCChHHHHHHHHcCC--EEEeeccCcccCcChhHhc----c-CCCEEEEcCCCCCCCCCc
Confidence 8887 56754 44443 444444555566676 5555666655778888542 2 4567666666666 444
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--CC-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--PF-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
+.++|.++|++ +.++|+||+|..... +...+.. +. ..++++||||.+ |++| ||+++++++++.+......
T Consensus 157 ~~~~l~~l~~~-~~~iIvDe~y~~~~~--~~~~~l~~~~~~~~i~i~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~ 232 (349)
T PRK07908 157 PAEQLLALRRP-GRILVVDEAFADAVP--GEPESLAGDDLPGVLVLRSLTKTW-SLAGLRVGYALGAPDVLARLTRGRAH 232 (349)
T ss_pred CHHHHHHHHhc-CCEEEEECcchhhcc--CCccccccccCCCEEEEeeccccc-CCccceeeeeecCHHHHHHHHhcCCC
Confidence 88999999974 788999999875321 2222211 11 246778999999 6566 9999999999888765443
Q ss_pred ccccCCcHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKE-VLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~-~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
+..+ .+.+.+ ..++.. ....++++.++++.++++++.+.|.+.|+++.. +.+++++|+.+++ .+.+..++
T Consensus 233 ~~~~---~~~~~a-~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-p~~g~~~~~~~~~----~~~~~~~l 303 (349)
T PRK07908 233 WPVG---TLQLEA-IAACCAPRAVAEAAADAARLAADRAEMVAGLRAVGARVVD-PAAAPFVLVRVPD----AELLRKRL 303 (349)
T ss_pred CCcc---HHHHHH-HHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhCCcEecc-CCCceEEEEECCc----HHHHHHHH
Confidence 3222 223333 333322 112356677888999999999999988877643 4678999998874 34566666
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+++||.+.++..+... ..+++|++++.
T Consensus 304 ~~~gI~v~~g~~f~~~----~~~~vRis~~~ 330 (349)
T PRK07908 304 RERGIAVRRGDTFPGL----DPDYLRLAVRP 330 (349)
T ss_pred HhCCEEEEECCCCCCC----CCCeEEEEeCC
Confidence 7789999987544211 14579999864
No 238
>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme. This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.
Probab=99.77 E-value=1.5e-16 Score=189.19 Aligned_cols=296 Identities=16% Similarity=0.133 Sum_probs=187.4
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCC-
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGD- 114 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD- 114 (1342)
-++.|+.+++++.++.. .| + ...++.+++++++++++|.+++++++ |||+|+..++.+++.+||
T Consensus 22 ~s~~~~~v~~a~~~~~~-~~---------~----~~~~~~~~~~~~~a~~~g~~~~~~~~-g~t~al~~al~al~~~Gd~ 86 (363)
T TIGR01437 22 VSTVSDEVADAQKRGAQ-NY---------F----EIKELVNKTGEYIANLLGVEDAVIVS-SASAGIAQSVAAVITRGNR 86 (363)
T ss_pred CCCCCHHHHHHHHHHHh-cC---------C----CHHHHHHHHHHHHHHhhCCCeEEEEc-CHHHHHHHHHHHHhcCCCc
Confidence 36678889999888763 22 1 13466777888999999998775555 999999999999999998
Q ss_pred --------------EEEEeeccCCccc-hhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC
Q psy13354 115 --------------TIMGMSLQEGGHL-THGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS 178 (1342)
Q Consensus 115 --------------~Vlv~~~~~~~~~-s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~ 178 (1342)
+|+++...+..+. +....+...|. +++.++. ++.+|++++++++++++..+++++. +++.
T Consensus 87 ~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~~~~~~~g~--~~v~v~~--~~~~d~~~le~ai~~~t~ai~~v~~~~~~~ 162 (363)
T TIGR01437 87 YLVENLHDSKIEVNEVVLPKGHNVDYGAPVETMVRLGGG--KVVEAGY--ANECSAEQLEAAITEKTAAILYIKSHHCVQ 162 (363)
T ss_pred chhhcccccccccceEEEECccchhcCCchHHHHHhcCC--eEEEEcC--CCCCCHHHHHHhcChhceEEEEEecCCCCc
Confidence 7776552222221 12234455666 4555554 3568999999999876654554443 4433
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCc
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~ 256 (1342)
...++++|+++|++||++|++|++|+.... .... .+|++++|+||+++||.+|++++++++++.+.......
T Consensus 163 g~~~~~~~i~~~a~~~gi~vivD~a~~~~~~------~~~~~g~D~~~~S~~K~l~gp~~G~l~~~~~~i~~~~~~~~~~ 236 (363)
T TIGR01437 163 KSMLSVEDAAQVAQEHNLPLIVDAAAEEDLQ------KYYRLGADLVIYSGAKAIEGPTSGLVLGKKKYIEWVKLQSKGI 236 (363)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEECCCCCchH------HHHHcCCCEEEEeCCcccCCCceEEEEEcHHHHHHHHhccCCC
Confidence 466999999999999999999999973110 0111 26999999999998999999999888877764321111
Q ss_pred ccc-CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC------CeEEEEEccCCCCCHH
Q psy13354 257 IQG-GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK------SHIILVDLRNKKITGK 328 (1342)
Q Consensus 257 ~~~-~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~------~~~v~i~~~~~~~~~~ 328 (1342)
... .......+++..++..... ...+..+.+.++++++.+.|.+. |+.+...... ...+.++....+.+..
T Consensus 237 ~~~~~~~~~~~~gl~aAl~~~~~-~~~~~~~~~~~~~~~l~~~L~~i~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~ 315 (363)
T TIGR01437 237 GRAMKVGKENILGLTAALEQYLS-TGKESGAEMVAKLTPFIEALNTLKGVSASIVQDEAGRDIARAEIRFDESELGMTAA 315 (363)
T ss_pred cceeccCHHHHHHHHHHHHHHHc-cCcccHHHHHHHHHHHHHHHhcCCCeEEEEecCCCCCcCceEEEEEeccCCCCCHH
Confidence 000 0011223444445444433 22233445556777899999885 7776542111 1223344433344556
Q ss_pred HHHHHHHHCC--ceeeeccCCCCCCCccccccccccccc
Q psy13354 329 IAESILESAN--IICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 329 ~~~~ll~~~G--I~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+.|++++ |.+++ ++.. .+.+|+....
T Consensus 316 ~l~~~L~~~~~~I~~r~--~~~~------~~~~~l~~~~ 346 (363)
T TIGR01437 316 DVVQALRQGEPAIYTRG--YKAN------EGIIEIDPRS 346 (363)
T ss_pred HHHHHHhcCCCCEEEee--eeec------CCeEEEEeec
Confidence 6666666667 55543 2211 3457777664
No 239
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=99.77 E-value=9.7e-18 Score=199.10 Aligned_cols=296 Identities=15% Similarity=0.161 Sum_probs=191.6
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~ 107 (1342)
.+.+..|+|+++|+.. +.....+. |+ ... . ..+++++++++|.+ +.+++++|+++++..++.
T Consensus 30 ~~~l~~Nenp~~~~~~--~~~~~~~~----Yp------~~~-~----~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~ 92 (351)
T PRK01688 30 DVWLNANEYPTAVEFQ--LTQQTLNR----YP------ECQ-P----KAVIENYAAYAGVKPEQVLVSRGADEGIELLIR 92 (351)
T ss_pred ceEecCCCCCCCCChh--hccccccc----CC------CCC-h----HHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHH
Confidence 4889999999877631 11110111 22 111 1 34555889999987 455566577889999999
Q ss_pred HccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 108 SVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 108 al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
+++.+| |.|+++.+.++ .+...++..|. +++.++.++++.+|++.+++.+ + +++++++++++|| ...+.+
T Consensus 93 ~~~~~g~~~vli~~P~y~---~y~~~~~~~G~--~~~~v~~~~~~~~d~~~l~~~~-~-~~~lv~l~nPnNPTG~~~~~~ 165 (351)
T PRK01688 93 AFCEPGKDAILYCPPTYG---MYSVSAETIGV--EIRTVPTLDNWQLDLPAIADNL-D-GVKVVYVCSPNNPTGNLINPQ 165 (351)
T ss_pred HhcCCCCCEEEEcCCCHH---HHHHHHHHcCC--EEEEeecCCCCCCCHHHHHHhc-c-CCcEEEEeCCCCCCCCCCCHH
Confidence 999997 89997664443 34445566777 4455566667889999999877 3 5677777777777 333555
Q ss_pred HHHH---HHHHcCCEEEEEcccchhhhhcCCCCCCCC-C-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 185 RFYH---IAKNINSYFMVDMAHYAGLIAAGEYPNPVP-F-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 185 ~I~~---la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+|.+ .|++ +.+||+||+|...... ........ . --+++.||||+| |++| ||+++++++++.+.....++
T Consensus 166 ~l~~l~~~~~~-~~~vivDEay~~f~~~-~s~~~~~~~~~n~iv~rSfSK~~-glaGlRiGy~i~~~~~i~~l~~~~~~~ 242 (351)
T PRK01688 166 DLRTLLELTRG-KAIVVADEAYIEFCPQ-ASLAGWLAEYPHLVILRTLSKAF-ALAGLRCGFTLANEEVINLLLKVIAPY 242 (351)
T ss_pred HHHHHHHhCCC-CcEEEEECchhhcCCC-CChHHHHhhCCCEEEEecchHhh-cCHHHHHhHHhCCHHHHHHHHhccCCC
Confidence 5544 4444 6899999998653211 00000011 1 247889999999 8788 99999999999888765555
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
..+ .+.+.++..++.+...+++++.++.+.++++++.+.|.+. ++..+ .++.++++|+.+++ +.++...++
T Consensus 243 ~v~---~~~~~~a~~~L~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~-~ps~~nfi~~~~~~---~~~l~~~L~- 314 (351)
T PRK01688 243 PLS---TPVADIAAQALSPQGIAAMRERVAEINANRQWLIAALKEIPCVEQV-FDSETNYILARFTA---SSAVFKSLW- 314 (351)
T ss_pred CCC---HHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeE-CCCCCcEEEEEcCC---HHHHHHHHH-
Confidence 433 3333333333332211356677788888999999999887 55422 24678899998752 345666666
Q ss_pred HCCceeeeccC-CCCCCCccccccccccccc
Q psy13354 336 SANIICNKNSI-PNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 336 ~~GI~v~~~~~-p~~~~~~~~~~~lRi~~~~ 365 (1342)
++||.+..+.. ++. .+++|++++.
T Consensus 315 ~~gi~vr~~~~~~~~------~~~iRis~~~ 339 (351)
T PRK01688 315 DQGIILRDQNKQPGL------SNCLRITIGT 339 (351)
T ss_pred HCCeEEEECCCcCCC------CCeEEEeCCC
Confidence 56999986532 222 3579999884
No 240
>PRK06836 aspartate aminotransferase; Provisional
Probab=99.77 E-value=8.5e-17 Score=194.22 Aligned_cols=310 Identities=14% Similarity=0.102 Sum_probs=196.1
Q ss_pred ceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHHHHH
Q psy13354 29 NIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~A~~ 103 (1342)
.+++..+.+. .++.+.+++...+.... .....|....+..++++.+++++...++. + +.+++++|+++++.
T Consensus 35 ~~~l~~g~p~~~~~~~v~~a~~~~~~~~~----~~~~~y~~~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~ 110 (394)
T PRK06836 35 VFDFSLGNPSVPPPAAVKEALRELAEEED----PGLHGYMPNAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALN 110 (394)
T ss_pred eEEecCcCCCCCCCHHHHHHHHHHHhcCC----cCcccCCCCCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHH
Confidence 3666655432 23448888776653211 11223445566778888777777765543 2 44555658889999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC-CCCCHHHHHHHHHhcCCeEEEEcCCCCC-c--
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYS-Q-- 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~-~~id~e~Le~~i~~~~~~liv~~~s~~~-~-- 179 (1342)
.++.+++.+||.|+++++.++. +.......|. +++.++.+++ +.+|++++++++++ +++++++++++|| +
T Consensus 111 ~~~~~l~~~gd~Vli~~p~~~~---~~~~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~~~~-~~~~v~~~~p~NPtG~~ 184 (394)
T PRK06836 111 VALKAILNPGDEVIVFAPYFVE---YRFYVDNHGG--KLVVVPTDTDTFQPDLDALEAAITP-KTKAVIINSPNNPTGVV 184 (394)
T ss_pred HHHHHhcCCCCEEEEcCCCCcc---HHHHHHHcCC--EEEEEecCCccCcCCHHHHHhhcCc-CceEEEEeCCCCCCCcC
Confidence 9999999999999987755544 3444456677 4444455544 78999999999876 4555565555665 2
Q ss_pred --ccCHHHHHHHHHH------cCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 180 --YIDFERFYHIAKN------INSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 180 --~~~l~~I~~la~~------~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
..++++|+++|++ ||++||+|++|....+........... ..++++|+||.+ |.+| ||+++++++.
T Consensus 185 ~~~~~~~~l~~la~~~~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~pGlRiG~~~~~~~~~ 263 (394)
T PRK06836 185 YSEETLKALAALLEEKSKEYGRPIYLISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSL-SLPGERIGYIAVNPEME 263 (394)
T ss_pred CCHHHHHHHHHHHHHhhhccCCCeEEEEeccccccccCCCCCCChHHccCcEEEEecchhhc-cCcceeeEEEecCHHHh
Confidence 2358889999999 899999999987544322111111111 358889999999 6555 9999987653
Q ss_pred HH---Hhh---ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEc
Q psy13354 247 KI---INS---AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 247 ~~---l~~---~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~ 320 (1342)
+. +.. ..........+...+.++...+.+ .. ....+.++++.+.+.|++.|+.+. ++.+++++|+.+
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~----~~--~~~~~~~~r~~l~~~L~~~g~~~~-~~~gg~~~~~~~ 336 (394)
T PRK06836 264 DADDLVAALVFANRILGFVNAPALMQRVVAKCLDA----TV--DVSIYKRNRDLLYDGLTELGFECV-KPQGAFYLFPKS 336 (394)
T ss_pred hhHHHHHHHHHHhhccccccCCHHHHHHHHHHhCC----hH--HHHHHHHHHHHHHHHHHhCCCEee-cCCceEEEEEeC
Confidence 32 111 111111112223334443333221 11 246678888999999998887764 355678999988
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+. ..+.+++ ..+.++||.+.++..+.. .+++|++++
T Consensus 337 ~~-~~~~~~~-~~l~~~gv~v~~g~~f~~------~~~iRi~~~ 372 (394)
T PRK06836 337 PE-EDDVAFC-EKAKKHNLLLVPGSGFGC------PGYFRLSYC 372 (394)
T ss_pred CC-CCHHHHH-HHHHhCCEEEECchhcCC------CCeEEEEec
Confidence 76 3345565 555667999998755532 246999997
No 241
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=99.77 E-value=7.9e-17 Score=195.15 Aligned_cols=285 Identities=13% Similarity=0.073 Sum_probs=180.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCC--CceEecCCHHH-HHHHHHHHccCC--CCEEEEeeccCCccchhhHHhh-hCCceeE
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQ-ANQAVFFSVLNP--GDTIMGMSLQEGGHLTHGMMLN-MSGKWFN 141 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~-A~~~al~al~~p--GD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~ 141 (1342)
..+..++.+++++++++++|.+ .+++++ +|+. ++.+++.+++.+ ||+|+++...|+.+...+.... ..|. +
T Consensus 59 ~~g~~~~~~~~~~~la~~~g~~~~~v~~~~-~g~~~~~~~~~~~~~~~~~gd~Vl~~~~~h~~~~~~~~~~~~~~g~--~ 135 (398)
T cd00613 59 SQGRLQALFELQTMLCELTGMDVANASLQD-EATAAAEAAGLAAIRAYHKRNKVLVPDSAHPTNPAVARTRGEPLGI--E 135 (398)
T ss_pred hhhHHHHHHHHHHHHHHHHCCCccceeccC-chHHHHHHHHHHHHhcccCCCEEEEcCccCcchHHHHHHhcccCCc--E
Confidence 4556688899999999999987 555555 5554 555555666666 9999988877776644443322 2235 4
Q ss_pred EEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccC-HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC
Q psy13354 142 SICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYID-FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF 219 (1342)
Q Consensus 142 ~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~-l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~ 219 (1342)
++.++.++++.+|++++++.+.++ ++++++++++++ ...+ +++|+++|++||+++|+|++|+.+.... ... ...
T Consensus 136 ~~~v~~~~~~~~d~~~l~~~i~~~-t~~viv~~~~~~G~~~~~l~~i~~la~~~g~~livD~~~~~~~~~~--~~~-~~~ 211 (398)
T cd00613 136 VVEVPSDEGGTVDLEALKEEVSEE-VAALMVQYPNTLGVFEDLIKEIADIAHSAGALVYVDGDNLNLTGLK--PPG-EYG 211 (398)
T ss_pred EEEeccCCCCCcCHHHHHHhcCCC-eEEEEEECCCCCceecchHHHHHHHHHhcCCEEEEEeccccccCCC--ChH-HcC
Confidence 455566666788999999988764 455555444444 3346 5999999999999999999986544211 011 113
Q ss_pred CcEEEecCCccCCCC------CeeEEEEechhHHHHhhcc-----------------------------CCccccCCcHH
Q psy13354 220 ADFITSTTHKSLRGP------RGGFILMKKKYKKIINSAV-----------------------------FPGIQGGPLMH 264 (1342)
Q Consensus 220 ~Divv~S~sK~l~gp------~GG~iv~~~~l~~~l~~~~-----------------------------~~~~~~~~~~~ 264 (1342)
+|++++|+|||+ +| .+|+++.++++++.+.... ..+.+++. ..
T Consensus 212 ~d~~~~s~~K~~-~p~g~Ggp~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~~~~~~~~~~-~~ 289 (398)
T cd00613 212 ADIVVGNLQKTG-VPHGGGGPGAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQHIRREKATSNICTGQ-AL 289 (398)
T ss_pred CCEEEeeccccC-CCCCCCCCceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchhhcccccccccceecH-HH
Confidence 799999999998 43 3389999888777642210 01111111 11
Q ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC--CCCHHHHHHHHHHCCceee
Q psy13354 265 VIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK--KITGKIAESILESANIICN 342 (1342)
Q Consensus 265 ~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~ 342 (1342)
...++..++......+++++.+++.++++++.+.|.+.+..........+.+++.++.. ..+.+++..+++ +||.+.
T Consensus 290 ~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~L~~-~gi~~~ 368 (398)
T cd00613 290 LALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVLPFNGPFFHEFVLRLPPLYGIRAEDLAKALID-GGFHAP 368 (398)
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCCCCeeEEEEEEcCCcchHHHHHHHHhhhh-cCcccc
Confidence 22223333444444577788899999999999999987654311111223456666542 223456666655 599875
Q ss_pred eccCCCCCCCccccccccccccccccc
Q psy13354 343 KNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 343 ~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
... + .. .+.+|++.+..++.
T Consensus 369 ~~~-~---~~---~~~lRis~~~~~t~ 388 (398)
T cd00613 369 TMY-L---PV---DGTLMIEPTETETK 388 (398)
T ss_pred ccc-c---CC---CCeEEEEcCCCCCH
Confidence 432 1 11 35799999888774
No 242
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=99.77 E-value=3.6e-17 Score=198.00 Aligned_cols=324 Identities=17% Similarity=0.169 Sum_probs=205.5
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc--
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-- 109 (1342)
.++..++++.+++++.+.+...+ +.+.+..+.......+..+.+++.+++++|.+ +.+++++|||+++..++.++
T Consensus 9 ~aa~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~ 86 (402)
T TIGR02006 9 YAATTPVDPRVAEKMMPYLTEKF--GNPASRSHSFGWEAEEAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAH 86 (402)
T ss_pred CCcCCCCCHHHHHHHHHHHHhcC--CCCChhhhHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHH
Confidence 34456788889999888775433 33322111111122345566788999999987 46777779999999888765
Q ss_pred --cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 110 --LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 110 --~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
.++||+|++...+|++....+..+...|. +++.++.++++.+|++.+++.+++. +++++++.++++ ...|+++
T Consensus 87 ~~~~~g~~Vi~~~~~h~s~~~~~~~~~~~g~--~v~~v~~~~~~~~d~~~l~~~l~~~-~~lv~v~~~~n~tG~~~~~~~ 163 (402)
T TIGR02006 87 FYKSKGNHIITSKTEHKAVLDTCRYLEREGF--EVTYLPPKSNGLIDLEELKAAIRDD-TILVSIMHVNNEIGVIQDIAA 163 (402)
T ss_pred hhcCCCCEEEECCCccHHHHHHHHHHHhcCC--EEEEEccCCCCcCCHHHHHHhcCCC-CEEEEEECCCcCceecccHHH
Confidence 36899999887666655444444445566 4455566677889999999998764 556555554444 4559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Cccc
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGIQ 258 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~~ 258 (1342)
|.++|+++|+++++|++|+.|...-+. ....+|++++|+||++ ||.| |+++.+++....+..... .+..
T Consensus 164 I~~l~~~~g~~livD~a~a~g~~~~~~---~~~~~D~~~~s~~K~~-gp~G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~ 239 (402)
T TIGR02006 164 IGEICRERKVFFHVDAAQSVGKIPINV---NELKVDLMSISGHKIY-GPKGIGALYVRRKPRVRLEALIHGGGHERGMRS 239 (402)
T ss_pred HHHHHHHcCCEEEEEcchhcCCcccCc---cccCCCEEEEehhhhc-CCCceEEEEEccCCCCCCCceecCCCccCCccC
Confidence 999999999999999999887652111 0113799999999987 8888 888888654333322111 1233
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC-CC-eEEEEEccCCCCCHHHHHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT-KS-HIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~-~~-~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
++++.+...++..++.... ++++...+++.+.++++.+.|.+. ++.+..... .. +...+.+... +.+.....+
T Consensus 240 gt~~~~~~~al~~al~~~~-~~~~~~~~~~~~l~~~l~~~l~~~~~v~~~~~~~~~~p~~~~v~f~~~--~~~~~~~~l- 315 (402)
T TIGR02006 240 GTLPTHQIVGMGEAFRIAK-EEMAQDTAHVLALRDRLLNGIKSIEEVYLNGDLEHRVPGNLNVSFNYV--EGESLIMAL- 315 (402)
T ss_pred CCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEEeCc--CHHHHHHhc-
Confidence 5666667777766665544 467778889999999999999874 555543211 11 2222333321 223333333
Q ss_pred HCCceeeecc--CCCCCCC-----------cccccccccccccccccc
Q psy13354 336 SANIICNKNS--IPNDPEK-----------PYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 336 ~~GI~v~~~~--~p~~~~~-----------~~~~~~lRi~~~~~~t~~ 370 (1342)
.+|.++.+. .+....+ ....+.+|+|++.++|.+
T Consensus 316 -~~i~v~~G~~c~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~e 362 (402)
T TIGR02006 316 -KDLAVSSGSACTSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEE 362 (402)
T ss_pred -CCEEEechhhcCCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHH
Confidence 377665432 1211100 011357899999987743
No 243
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=99.77 E-value=5.7e-17 Score=194.20 Aligned_cols=302 Identities=16% Similarity=0.177 Sum_probs=196.0
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..++|.+ ++.+.+++.+... . ... |+...+ .++++ .+++++|.+ +.+++++|+++++..
T Consensus 37 ~~i~l~~~~~~~~~~~~~~~al~~~~~-~-~~~------Y~~~~g-~~lr~----~ia~~~~~~~~~i~~t~G~~~~l~~ 103 (371)
T PRK05166 37 RIAKLGSNENPLGPSPAVRRAFADIAE-L-LRL------YPDPQG-RALRE----AIAARTGVPADRIILGNGSEDLIAV 103 (371)
T ss_pred ceEEcCCCCCCCCCCHHHHHHHHHHHH-H-hhc------CCCCcH-HHHHH----HHHHHhCcCHHHEEEcCCHHHHHHH
Confidence 558888887653 3347777665432 1 112 222222 24444 777888876 456666577889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.+++++||+|++..+.++ .........|. ++++++.+.++.+|++++++.+++ .++++++++++|| ...+
T Consensus 104 ~~~~~~~~gd~vli~~P~y~---~~~~~~~~~g~--~~~~v~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~ 177 (371)
T PRK05166 104 ICRAVLRPGDRVVTLYPSFP---LHEDYPTMMGA--RVERVTVTPDLGFDLDALCAAVAR-APRMLMFSNPSNPVGSWLT 177 (371)
T ss_pred HHHHhcCCCCEEEEcCCChH---HHHHHHHHcCC--eEEEeecCCCCCCCHHHHHHhhhc-CCCEEEEeCCCCCCCCCCC
Confidence 99999999999997664444 33444566676 455556666678999999998876 4466666666666 3335
Q ss_pred HHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCC---C-C--CcEEEecCCccCCCCCe---eEEEE-echhHHHHh
Q psy13354 183 FERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPV---P-F--ADFITSTTHKSLRGPRG---GFILM-KKKYKKIIN 250 (1342)
Q Consensus 183 l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l---~-~--~Divv~S~sK~l~gp~G---G~iv~-~~~l~~~l~ 250 (1342)
.+++.++++. .+++||+||+|..... .+.+++.+ . . ..++++||||.| |.+| ||+++ ++++++.+.
T Consensus 178 ~~~~~~l~~~~~~~~~ii~De~y~~~~~-~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~l~GlRiG~~i~~~~~l~~~~~ 255 (371)
T PRK05166 178 ADQLARVLDATPPETLIVVDEAYAEYAA-GDDYPSALTLLKARGLPWIVLRTFSKAY-GLAGLRVGYGLVSDPELVGLLD 255 (371)
T ss_pred HHHHHHHHHhCCCCcEEEEECcHHHhcC-CcCcccHHHHHhhcCCCEEEEeechHhh-hcchhheeeeecCCHHHHHHHH
Confidence 5555555443 4889999999876542 22222211 1 1 247889999999 6666 99776 667777776
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHH
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIA 330 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~ 330 (1342)
.....+ + .+...+.++..++.. .+++++.++.+.++++++.+.|++.|+.+. +++++++|++++. .+.++.
T Consensus 256 ~~~~~~--~-~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~--p~~g~fl~~~~~~--~~~~l~ 326 (371)
T PRK05166 256 RVRTPF--N-VNGAAQAAALAALDD--EEHLAKGVALALAERERLKKELAEMGYRIA--PSRANFLFFDARR--PASAVA 326 (371)
T ss_pred HhccCC--C-CCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHHCcCeeC--CCcCCEEEEeCCC--CHHHHH
Confidence 543322 2 234444444444432 236777788889999999999999888753 4567788998753 245666
Q ss_pred HHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
..+++ +||.+.++..++. .+++|++++..
T Consensus 327 ~~l~~-~gi~v~p~~~~~~------~~~iRi~~~~~ 355 (371)
T PRK05166 327 EALLR-QGVIVKPWKQPGF------ETFIRVSIGSP 355 (371)
T ss_pred HHHHH-CCeEEecCCCCCC------CCeEEEEcCCH
Confidence 66665 5999998654322 45799999864
No 244
>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn). AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein
Probab=99.77 E-value=1.5e-16 Score=189.43 Aligned_cols=283 Identities=19% Similarity=0.183 Sum_probs=184.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
.+...++++ .+++++|.+.+++++ ||++|+..++.++ +.+||+|+++...+ .+....+...|. +++.++
T Consensus 17 ~~~~~~~~~----~la~~~~~~~~~~~~-sgt~al~~~l~~l~~~~gd~vl~~~~~~---~~~~~~~~~~g~--~~~~~~ 86 (352)
T cd00616 17 GPKVREFEK----AFAEYLGVKYAVAVS-SGTAALHLALRALGIGPGDEVIVPSFTF---VATANAILLLGA--TPVFVD 86 (352)
T ss_pred CHHHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHcCCCCCCEEEeCCcch---HHHHHHHHHcCC--eEEEEe
Confidence 344555555 899999987766666 9999999999998 68999999766444 444555566676 445556
Q ss_pred CCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEe
Q psy13354 147 LNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITS 225 (1342)
Q Consensus 147 ~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~ 225 (1342)
.++ ++.+|++++++.+++ +++++++++ .++...++++|.++|+++|++||+|++|+.|....+..... ..|+.++
T Consensus 87 ~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~~i~~l~~~~~i~li~D~a~~~g~~~~~~~~~~--~~d~~~~ 162 (352)
T cd00616 87 IDPDTYNIDPELIEAAITP-RTKAIIPVH-LYGNPADMDAIMAIAKRHGLPVIEDAAQALGATYKGRKVGT--FGDAGAF 162 (352)
T ss_pred cCCCcCCcCHHHHHHhcCc-CCeEEEEEC-CCCCcCCHHHHHHHHHHcCCeEEEECCCCCCCeECCEEccc--CcceeEE
Confidence 554 788999999998865 456555543 24456699999999999999999999999876543321121 2478888
Q ss_pred cCC--ccCCCCCeeEEEEec-hhHHHHhhccCCcc-------------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHH
Q psy13354 226 TTH--KSLRGPRGGFILMKK-KYKKIINSAVFPGI-------------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289 (1342)
Q Consensus 226 S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~~-------------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~ 289 (1342)
|++ |+++++.||++++++ ++.+.++....... ++....+..+++..... ..++...++..
T Consensus 163 S~~~~K~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~l----~~~~~~~~~~~ 238 (352)
T cd00616 163 SFHPTKNLTTGEGGAVVTNDEELAERARLLRNHGRDRDRFKYEHEILGYNYRLSEIQAAIGLAQL----EKLDEIIARRR 238 (352)
T ss_pred cCCCCCCCcccCceEEEECCHHHHHHHHHHHHcCCCCCCCccccceeeeccCcCHHHHHHHHHHH----HhhHHHHHHHH
Confidence 876 999667778888874 66665543211110 11112233333332222 24566778889
Q ss_pred HHHHHHHHHHHhC-CcEEeeCCC----CCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcc---------
Q psy13354 290 KNAKILSKILDQR-GIRIVSGGT----KSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPY--------- 354 (1342)
Q Consensus 290 ~~a~~l~~~L~~~-g~~~~~~~~----~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~--------- 354 (1342)
++++++.+.|.+. |+++..++. ..+++.+.+++. ..+.+.+...|+++||.+...+.|......+
T Consensus 239 ~~~~~~~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~ 318 (352)
T cd00616 239 EIAERYKELLADLPGIRLPDVPPGVKHSYHLYVIRLDPEAGESRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPG 318 (352)
T ss_pred HHHHHHHHHhcCCCCccCCCCCCCCceeeEEEEEEECCcCCCCHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcC
Confidence 9999999999984 777654322 234566666541 2244444555566699888766665433211
Q ss_pred --------cccccccccccccc
Q psy13354 355 --------FTSGIRLGSSAITT 368 (1342)
Q Consensus 355 --------~~~~lRi~~~~~~t 368 (1342)
....+|+++...+|
T Consensus 319 ~~~~a~~~~~~~l~l~~~~~~t 340 (352)
T cd00616 319 DLPNAEDLAERVLSLPLHPSLT 340 (352)
T ss_pred CChHHHHHHhCeEEccCCCCCC
Confidence 01467888777655
No 245
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=99.77 E-value=1.1e-16 Score=190.91 Aligned_cols=298 Identities=14% Similarity=0.099 Sum_probs=192.8
Q ss_pred cCceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.++|..++|..+ |.+.+++.+.+.. ..+|+. .+..+|++ .++++++.+ +.+++++|+++++.
T Consensus 30 ~~~i~l~~~~~~~~~~~~~~~~~~~~~~~--~~~Y~~-------~~~~~lr~----~ia~~~~~~~~~I~it~G~~~al~ 96 (357)
T PRK14809 30 DDLVKLSSNENPHGPSPAAVEAIREAAER--VHSYPK-------ASHADLTA----ALADRWDVSPEQVWLANGGDGALD 96 (357)
T ss_pred cceeEecCCCCCCCCCHHHHHHHHHHHhh--hhcCCC-------CCHHHHHH----HHHHHhCCCcceEEECCCHHHHHH
Confidence 35688888876543 3477887766532 122321 22345555 667777766 45556657888999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.++++|||.|+++.+.++ .+.......|..+..++++.++++.++++.+.+... .++++++++++|| ...
T Consensus 97 ~~~~~~~~~gd~V~v~~P~y~---~~~~~~~~~g~~~~~~~l~~~~~~~~~~~~~~~~~~--~~k~i~l~~p~NPTG~~~ 171 (357)
T PRK14809 97 YLARAMLDPGDTVLVPDPGFA---YYGMSARYHHGEVREYPVSKADDFEQTADTVLDAYD--GERIVYLTSPHNPTGSEI 171 (357)
T ss_pred HHHHHhcCCCCEEEEeCCChH---HHHHHHHHcCCeEEEEecccCcCCCcCHHHHHHhhc--CCcEEEEeCCCCCCCcCC
Confidence 999999999999997775543 333445666776666665544557778888776542 3567777777777 333
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
+.+++.++++.. +++||+||+|...... .......+. ..++++||||.| |.+| ||+++++++++.+.....
T Consensus 172 s~~~~~~l~~~~~~~~~iI~De~y~~~~~~-~~~~~~~~~~~~vi~~~SfSK~~-~~~GlRiG~~~~~~~~~~~~~~~~~ 249 (357)
T PRK14809 172 PLDEVEALAERTDEETLVVVDEAYGEFAER-PSAVALVEERDDVAVLRTFSKAY-GLAGLRLGYAVVPEEWADAYARVNT 249 (357)
T ss_pred CHHHHHHHHHhCccCcEEEEechhhhccCC-chhHHHHhhCCCEEEEecchhHh-cCcchhheeeecCHHHHHHHHHhCC
Confidence 555555555543 7899999998754321 111111111 247789999999 7677 999999999888876433
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++ +.+.+.+.++..++.+ ..++++.++.+.++++++.+.|...++ +.+++++|+.++ .+.++... +
T Consensus 250 ~~---~~~~~~~~~a~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~-----~~~g~f~~~~~~---~~~~~~~~-l 315 (357)
T PRK14809 250 PF---AASELACRAGLAALDD--DEHVERTVETARWAREYIREELDAPTW-----ESAGNFVLAEVG---DASAVAEA-A 315 (357)
T ss_pred CC---CCCHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHhcCccC-----CCCCCEEEEECC---CHHHHHHH-H
Confidence 22 2234444444434322 346777778888888888888865422 356788999875 24456655 5
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.++||.+.++..++. .+++|++++
T Consensus 316 ~~~gv~v~~g~~f~~------~~~iRls~~ 339 (357)
T PRK14809 316 QERGVIVRDCTSFGL------PECIRITCG 339 (357)
T ss_pred HHCCEEEEECccCCC------CCeEEEecC
Confidence 667999998876643 246999875
No 246
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=99.77 E-value=6.6e-17 Score=193.78 Aligned_cols=303 Identities=10% Similarity=0.103 Sum_probs=191.4
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecCCHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~sGs~ 100 (1342)
..+.+..|++..+ +.+++++.+++..... . ..|. ..+..+|++++++++.+.++ .+ +.+++++|+++
T Consensus 29 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~Y~-~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~ 102 (374)
T PRK02610 29 QLDRLDTNEFPYDLPPDLKQKLAWLYQQGIE----S-NRYP-DGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDE 102 (374)
T ss_pred ceeEecCCCCCCCCCHHHHHHHHHHHhhccc----c-cCCC-CCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHH
Confidence 3577888887644 3488888876643110 0 1122 23456788866666554431 33 34555647778
Q ss_pred HHHHHHHHccCCCC-EEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHh---cCCeEEEEcCC
Q psy13354 101 ANQAVFFSVLNPGD-TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKK---NKPKLIIAGAS 175 (1342)
Q Consensus 101 A~~~al~al~~pGD-~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~---~~~~liv~~~s 175 (1342)
++..++.+++.+|| .|++..+.++ .....+...|. +++.++.++ ++.+|++++++.+++ .++++++++++
T Consensus 103 al~~~~~~~~~~g~~~Vlv~~P~y~---~~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~~~~~~~k~i~l~~P 177 (374)
T PRK02610 103 LIRSLLIATCLGGEGSILVAEPTFS---MYGILAQTLGI--PVVRVGRDPETFEIDLAAAQSAIEQTQNPPVRVVFVVHP 177 (374)
T ss_pred HHHHHHHHHcCCCCCeEEEcCCChH---HHHHHHHHcCC--EEEEecCCcccCCCCHHHHHHHHHhhcCCCceEEEEeCC
Confidence 99888888877886 8997665544 34445566677 455556553 478999999998875 56788887777
Q ss_pred CCC--ccc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-C-CcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 176 AYS--QYI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-F-ADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 176 ~~~--~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~-~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+|| ... .+++|.++| ++++||+||+|..... ......+. . ..++++||||++ |.+| ||+++++++
T Consensus 178 ~NPTG~~~s~~~l~~l~~~~--~~~~iI~De~Y~~~~~--~~~~~~~~~~~~~ivi~SfSK~~-g~~GlRiG~~v~~~~l 252 (374)
T PRK02610 178 NSPTGNPLTAAELEWLRSLP--EDILVVIDEAYFEFSQ--TTLVGELAQHPNWVILRTFSKAF-RLAAHRVGYAIGHPEL 252 (374)
T ss_pred CCCCCCCCCHHHHHHHHhcc--CCcEEEEeccccccCc--cchHHHHhcCCCEEEEEecchhc-cCcccceeeeecCHHH
Confidence 877 222 455555554 4899999999864321 11111111 1 237789999999 7677 999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~ 324 (1342)
++.+......+. .+...+.++..++.+ .. .+.+...++.+.++.+.+.|.+. ++.+ .+.+++++|+.++...
T Consensus 253 ~~~l~~~~~~~~---~~~~~q~a~~~~l~~-~~-~~~~~~~~~~~~r~~l~~~L~~~~~~~~--~p~~g~f~~~~l~~~~ 325 (374)
T PRK02610 253 IAVLEKVRLPYN---LPSFSQLAAQLALEH-RQ-ELLAAIPEILQERDRLYQALQELPQLRV--WPSAANFLYLRLSQDA 325 (374)
T ss_pred HHHHHHhcCCCC---CCHHHHHHHHHHhcC-HH-HHHHHHHHHHHHHHHHHHHHHhCCCcEe--CCCcceEEEEeCCCCC
Confidence 988876543332 234455554444432 22 22333344455577788888775 5654 3567889999987644
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.++... +.++||.+.+. .+++|++++.
T Consensus 326 ~~~~~~~~-l~~~gi~v~~~-----------~~~lRls~~~ 354 (374)
T PRK02610 326 ALAALHQA-LKAQGTLVRHT-----------GGGLRITIGT 354 (374)
T ss_pred CHHHHHHH-HHHCCEEEEeC-----------CCeEEEeCCC
Confidence 44555555 46679998642 2469999875
No 247
>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions. The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....
Probab=99.76 E-value=9.9e-17 Score=191.21 Aligned_cols=260 Identities=15% Similarity=0.139 Sum_probs=179.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
++...++|+ .+++++|.++++.++ |||.|+.+++.++ +++||+|+++++.++ +...++...|. +++.++
T Consensus 24 g~~~~~fE~----~~a~~~g~~~~~~~~-sgt~Al~~al~~l~~~~gdeVi~p~~t~~---~~~~ai~~~G~--~pv~~D 93 (363)
T PF01041_consen 24 GPYVEEFEK----EFAEYFGVKYAVAVS-SGTSALHLALRALGLGPGDEVIVPAYTFP---ATASAILWAGA--EPVFVD 93 (363)
T ss_dssp SHHHHHHHH----HHHHHHTSSEEEEES-SHHHHHHHHHHHTTGGTTSEEEEESSS-T---HHHHHHHHTT---EEEEE-
T ss_pred CHHHHHHHH----HHHHHhCCCeEEEeC-ChhHHHHHHHHhcCCCcCceEecCCCcch---HHHHHHHHhcc--EEEEEe
Confidence 566667777 999999999999988 9999999999999 789999998886654 44555566677 677778
Q ss_pred CC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEe
Q psy13354 147 LN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITS 225 (1342)
Q Consensus 147 ~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~ 225 (1342)
++ +++.+|++.+++++++.+.+++++|. ++.+.++++|.++|+++|++||+|++|++|..+.+...+.+. |+.++
T Consensus 94 i~~~~~~id~~~~~~~i~~~t~ai~~~h~--~G~~~d~~~i~~~~~~~~i~lIeD~a~a~g~~~~g~~~G~~g--d~~~f 169 (363)
T PF01041_consen 94 IDPETLNIDPEALEKAITPKTKAILVVHL--FGNPADMDAIRAIARKHGIPLIEDAAQAFGARYKGRPVGSFG--DIAIF 169 (363)
T ss_dssp BETTTSSB-HHHHHHHHHTTEEEEEEE-G--GGB---HHHHHHHHHHTT-EEEEE-TTTTT-EETTEETTSSS--SEEEE
T ss_pred ccCCcCCcCHHHHHHHhccCccEEEEecC--CCCcccHHHHHHHHHHcCCcEEEccccccCceeCCEeccCCC--CceEe
Confidence 77 78999999999999987766666654 334459999999999999999999999999887776666554 88888
Q ss_pred cCC--ccCCCCCeeEEEEec-hhHHHHhhccCCc---------------cccCCcHHHHHHHHHHHHHhccchHHHHHHH
Q psy13354 226 TTH--KSLRGPRGGFILMKK-KYKKIINSAVFPG---------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQ 287 (1342)
Q Consensus 226 S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~---------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~ 287 (1342)
||+ |.++++.||++++++ ++.+.++.....+ .++..++..++|...+.++. ++...++
T Consensus 170 Sf~~~K~i~~geGG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~n~rm~~~~AAigl~QL~~----L~~~~~~ 245 (363)
T PF01041_consen 170 SFHPTKIITTGEGGAVVTNDPELAERARALRNHGRSRDAFRRYRHELPPGYNFRMSELQAAIGLAQLKR----LDEIIAR 245 (363)
T ss_dssp ESSTTSSS-SSS-EEEEESTHHHHHHHHHHTBTTEETSECSTTEESSSS--B-B-BHHHHHHHHHHHHT----HHHHHHH
T ss_pred cCCCCCCCcCCCCeeEEecHHHHHHHhhhhhccCcCccccccccccccCCcccccHHHHHHHHHHHHHH----hhhhHHH
Confidence 876 999778889999986 5555554422211 12333455666666555544 4566777
Q ss_pred HHHHHHHHHHHHHhCC-cEEeeCCCC-----CeEEEEEccCCC-CCHHHHHHHHHHCCceeeecc
Q psy13354 288 VVKNAKILSKILDQRG-IRIVSGGTK-----SHIILVDLRNKK-ITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 288 l~~~a~~l~~~L~~~g-~~~~~~~~~-----~~~v~i~~~~~~-~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
.++++.++.+.|.+.. +.....+.. .+.+++.+++.. .+.+.+...|++.||.+.+.+
T Consensus 246 R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~~~rd~l~~~L~~~GI~~~~~~ 310 (363)
T PF01041_consen 246 RRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEALADRDELVEALRARGIETRPHY 310 (363)
T ss_dssp HHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGCSTHHHHHHHHHHTTBEEBCST
T ss_pred HHHHHHHHHHHHhcCCCcccccccccccccccccccccccccccchHHHHHHHHHHCCCcccccc
Confidence 8899999999999864 544332221 223445555431 245666666666799999765
No 248
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=99.76 E-value=3.8e-16 Score=187.48 Aligned_cols=310 Identities=19% Similarity=0.197 Sum_probs=200.6
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC-ceEecCCHHHHHHHHHHHcc
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA-ANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~-~vi~~~sGs~A~~~al~al~ 110 (1342)
+..+.+ ..+.+.+++...+... .+.+ ..+. ....+++.+++++++++|+++ .++++++|++++..++.++.
T Consensus 26 ~~~~~~-~~~~~~~a~~~~~~~~--~~~~--~~~~---~~~~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~ 97 (373)
T TIGR03812 26 GSMCTN-PHPIAVKAYDMFIETN--LGDP--GLFP---GTKKIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAK 97 (373)
T ss_pred EEEeCC-chHHHHHHHHHHhhcC--CCCc--ccCc---cHHHHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHH
Confidence 334343 3334566765554321 1222 2222 234667788899999999873 33444488999888877653
Q ss_pred ------CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCH
Q psy13354 111 ------NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDF 183 (1342)
Q Consensus 111 ------~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l 183 (1342)
.+||+|+++. ++|.+....+...|..+. .++.++++.+|++++++.+.+++..+++++++++. ...|+
T Consensus 98 ~~~~~~~~g~~vl~~~---~~h~~~~~~~~~~G~~~~--~v~~~~~~~~d~~~l~~~l~~~~~~vv~~~~~~~tG~~~~~ 172 (373)
T TIGR03812 98 NLAREEKRTPNIIVPE---SAHFSFEKAAEMLGLELR--YAPLDEDYTVDVKDVEDLIDDNTIGIVGIAGTTELGQIDDI 172 (373)
T ss_pred HHHhccCCCcEEEECC---cchHHHHHHHHHcCCeEE--EEeeCCCCCcCHHHHHHHHhhCcEEEEEECCCCCCCccCCH
Confidence 4778999665 455555556677787544 44556678899999999998765566666644433 55599
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcC---CCCCCC----CCCcEEEecCCccCCCCC--eeEEEEechhHHHHhhccC
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAG---EYPNPV----PFADFITSTTHKSLRGPR--GGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~---~~~~~l----~~~Divv~S~sK~l~gp~--GG~iv~~~~l~~~l~~~~~ 254 (1342)
++|.++|+++|+++++|++|+.+..... ...... ..+|++++|.|||..+|. ||+++.++++.+.+... .
T Consensus 173 ~~i~~l~~~~~~~livD~a~~~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~~~G~~~~~~~~~~~~l~~~-~ 251 (373)
T TIGR03812 173 EELSKIALENGIYLHVDAAFGGFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPIPAGGILFRSKSYLKYLSVD-A 251 (373)
T ss_pred HHHHHHHHHcCCeEEEEcCchhHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcCCceEEEEeCHHHHhhhccc-C
Confidence 9999999999999999999986543211 111111 246889999999864543 35666777777766432 2
Q ss_pred Cccc--------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 255 PGIQ--------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 255 ~~~~--------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
++.. ++++.....++..++..+..+++++..+++.++++++++.|++.|+..+.+ +..+++.+.+++ .
T Consensus 252 ~~~~~~~~~~~~gt~~~~~~~~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~-~~~~~v~~~~~~---~ 327 (373)
T TIGR03812 252 PYLTVKKQATITGTRSGASAAATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIGFEPVIE-PVLNIVAFEVDD---P 327 (373)
T ss_pred cccCCCCCcceEeechhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEcC-CCceEEEEEeCC---H
Confidence 3322 233334455555555554455778889999999999999999988764433 345666666553 2
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++...|. ++||.+..... +..+|++++..++.
T Consensus 328 ~~v~~~L~-~~gi~v~~~~~---------~~~iRis~~~~~t~ 360 (373)
T TIGR03812 328 EEVRKKLR-DRGWYVSVTRC---------PKALRIVVMPHVTR 360 (373)
T ss_pred HHHHHHHH-HCCceeccCCC---------CCEEEEEEECCCCH
Confidence 35555555 45999875421 24699999886553
No 249
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=99.76 E-value=2.4e-16 Score=188.77 Aligned_cols=288 Identities=14% Similarity=0.124 Sum_probs=185.3
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~ 115 (1342)
..+++.-++++.+.+.+.+ +..++...++|+ .+++++|.++++.++ |||+|+.+++.++ ++|||+
T Consensus 10 p~~~~~e~~~~~~~l~~~~---------~~~g~~~~~le~----~la~~~g~~~~v~~~-sgt~al~lal~al~~~~Gd~ 75 (379)
T PRK11658 10 PAMGDEELAAVKEVLRSGW---------ITTGPKNQALEQ----AFCQLTGNQHAIAVS-SATAGMHITLMALGIGPGDE 75 (379)
T ss_pred CCCCHHHHHHHHHHHHcCC---------ccCCHhHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHcCCCCCCE
Confidence 4456666777777664211 122344556666 899999998776666 9999999999999 899999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNIN 194 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~g 194 (1342)
|++++..+.+ ....+...|. +++.++.+ +++.+|++++++.++++ +++|+.++ .++...++++|.++|+++|
T Consensus 76 Viv~~~~~~~---~~~~~~~~G~--~~v~vd~~~~~~~~d~~~l~~~i~~~-tkav~~~~-~~G~~~d~~~i~~~a~~~g 148 (379)
T PRK11658 76 VITPSLTWVS---TLNMIVLLGA--TPVMVDVDRDTLMVTPEAIEAAITPR-TKAIIPVH-YAGAPADLDAIRAIGERYG 148 (379)
T ss_pred EEECCCcHHH---HHHHHHHcCC--EEEEEecCCCcCCcCHHHHHHhcccC-CeEEEEeC-CCCCcCCHHHHHHHHHHcC
Confidence 9987755544 3445566677 55555665 45678999999998764 44544322 2345579999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-chhHHHHhhccCCc-----------------
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKYKKIINSAVFPG----------------- 256 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~-~~l~~~l~~~~~~~----------------- 256 (1342)
++||+|++|++|....+...+... .++++++.+|.++++.||+++++ +++.+.++.....+
T Consensus 149 i~vi~D~a~a~g~~~~~~~~g~~g-~~~~Sf~~~K~l~~g~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ 227 (379)
T PRK11658 149 IPVIEDAAHAVGTYYKGRHIGARG-TAIFSFHAIKNITCAEGGLVVTDDDELADRLRSLKFHGLGVDAFDRQTQGRAPQA 227 (379)
T ss_pred CeEEEECCCccCCeECCeecCCCC-CEEEeCCCCCcCcccCceEEEECCHHHHHHHHHHHHcCCCcchhhhhcccCCCcc
Confidence 999999999988765554443332 25666677799978888998886 56666554321110
Q ss_pred -----cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC----C-eEEEEEccCC--C
Q psy13354 257 -----IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK----S-HIILVDLRNK--K 324 (1342)
Q Consensus 257 -----~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~----~-~~v~i~~~~~--~ 324 (1342)
.++..++..++|+..+.+ +.+++..++.+++++++.+.|.+.++.....+.. . +...+.++.. +
T Consensus 228 ~~~~~G~n~~~~~l~AAl~~~ql----~~l~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (379)
T PRK11658 228 EVLTPGYKYNLADINAAIALVQL----AKLEALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVDEERCG 303 (379)
T ss_pred eeeccccccCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEECCcccc
Confidence 001112233444444433 3556677888888999999998765432221111 1 3334444321 2
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCC
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDP 350 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~ 350 (1342)
.+.+.+...|+++||.+...+.|.+.
T Consensus 304 ~~r~~~~~~L~~~gI~~~~~~~~~~~ 329 (379)
T PRK11658 304 ISRDALMEALKERGIGTGLHFRAAHT 329 (379)
T ss_pred CCHHHHHHHHHHCCCCCcccCcCccc
Confidence 34555555666779988766555443
No 250
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=99.76 E-value=1.9e-16 Score=188.99 Aligned_cols=303 Identities=12% Similarity=0.020 Sum_probs=196.2
Q ss_pred CceeeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..++|..+| .+.+++.+.+.. ..+|+ .. ...+|++ .++++++.+ +.+++++|+++++..
T Consensus 23 ~~i~l~~~~n~~~~~~~~~~a~~~~~~~--~~~Y~------~~-~~~~Lr~----aia~~~~v~~~~I~it~G~~~~i~~ 89 (360)
T PRK07392 23 AILDFSASINPLGPPESVIAAIQSALSA--LRHYP------DP-DYRELRL----ALAQHHQLPPEWILPGNGAAELLTW 89 (360)
T ss_pred cEEEeCCcCCCCCCCHHHHHHHHHHHHH--hhcCC------Cc-CHHHHHH----HHHHHhCcChhhEEECCCHHHHHHH
Confidence 44778888776543 388887766642 11222 11 1235555 666777766 445555477889999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCC-----CCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE-----KIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~-----~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
++.++. +||.|++..+.++ .....+...|. ++++++.+.++ ..+++.+++.. ..++++++++++||
T Consensus 90 ~~~~l~-~g~~vlv~~P~y~---~~~~~~~~~g~--~~~~v~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~nP~NPT 161 (360)
T PRK07392 90 AGRELA-QLRAVYLITPAFG---DYRRALRAFGA--TVKELPLPLDQPSPGLTLRLQTLPPQL--TPNDGLLLNNPHNPT 161 (360)
T ss_pred HHHHhC-CCCeEEEECCCcH---HHHHHHHHcCC--eEEEEecccccCCcccccCHHHHHHhc--cCCCEEEEeCCCCCC
Confidence 988865 6899997765544 44455566777 44444554322 24566665443 24577777777777
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CC--CcEEEecCCccCCCCCe---eEEEEechhHHHH
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PF--ADFITSTTHKSLRGPRG---GFILMKKKYKKII 249 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l 249 (1342)
...+.++|.++|+++++ +|+||+|...... +...+.. +. .-++++||||.| |.+| ||+++++++++.+
T Consensus 162 G~~~~~~~l~~l~~~~~~-~IiDE~y~~~~~~-~~~~s~~~~~~~~~~vi~i~S~SK~~-~l~GlRiG~~v~~~~~~~~~ 238 (360)
T PRK07392 162 GKLWSREAILPLLEQFAL-VVVDEAFMDFLPP-DAEQSLIPCLAEYPNLIILRSLTKFY-SLPGLRLGYAIAHPDRLQRW 238 (360)
T ss_pred CCCcCHHHHHHHHHHCCE-EEEECchhhhccC-ccccchHHHhhcCCCEEEEEechhhh-cCCchheeeeeCCHHHHHHH
Confidence 44488999999999985 6679998754332 2211111 11 247889999999 7667 9999999888887
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
......+ +.+...+.++..++.+ ..+.+...+.+.++++++.+.|++. |+.+. +.+++++|++++. .+.+
T Consensus 239 ~~~~~~~---~~s~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~--~~~~~fl~~~~~~--~~~~ 309 (360)
T PRK07392 239 QQWRDPW---PVNGLAAAAAIAALAD--RDFQQQTWAWLPPAREALFQGLASLPGLTPL--PSAANFLLVQSQG--SALQ 309 (360)
T ss_pred HhhCCCC---CCCHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCCEEEEEcCC--CHHH
Confidence 6543222 2334455555444432 2355556677888899999999875 66653 3567889988764 3557
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+...+++++||.+.++..++... .+++|++++...
T Consensus 310 l~~~ll~~~gv~v~pg~~f~~~~----~~~iRi~~~~~~ 344 (360)
T PRK07392 310 LQEKLLQQHRILIRDCLSFPELG----DRYFRVAVRTEA 344 (360)
T ss_pred HHHHHHhhCCEEEEeCCCCCCCC----CCEEEEEeCCHH
Confidence 77788888899999886554221 357999988743
No 251
>PRK14012 cysteine desulfurase; Provisional
Probab=99.75 E-value=7.7e-17 Score=195.35 Aligned_cols=264 Identities=16% Similarity=0.160 Sum_probs=173.8
Q ss_pred ecCCCCcHHHHHHHhHHHH--hccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc-
Q psy13354 34 ASENYTSLAVMEAQGTLLT--NKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV- 109 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~--~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al- 109 (1342)
++..++++.+++++.+.+. +.+ +.+.+..........+..+.+++.+++++|.+ +.+++++|||+|+..++.++
T Consensus 10 a~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~ 87 (404)
T PRK14012 10 SATTPVDPRVAEKMMPYLTMDGTF--GNPASRSHRFGWQAEEAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAA 87 (404)
T ss_pred cCCCCCCHHHHHHHHHHHHhcccC--cCCCchhhHHHHHHHHHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHH
Confidence 4456778889999888774 233 22222111111111244555777999999987 44666669999999888776
Q ss_pred ---cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC-cccCHH
Q psy13354 110 ---LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS-QYIDFE 184 (1342)
Q Consensus 110 ---~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~-~~~~l~ 184 (1342)
..+||+|++.+..+++....+..+...|+ +++.++.++++.+|+++++++++++ +++++++. ++++ ...|++
T Consensus 88 ~~~~~~gd~Vi~~~~~~~s~~~~~~~~~~~g~--~~~~v~~~~~g~~d~~~l~~~i~~~-t~lv~~~~~~n~tG~~~~~~ 164 (404)
T PRK14012 88 HFYQKKGKHIITSKTEHKAVLDTCRQLEREGF--EVTYLDPQSNGIIDLEKLEAAMRDD-TILVSIMHVNNEIGVIQDIA 164 (404)
T ss_pred HhhcCCCCEEEEecCccHHHHHHHHHHHhCCC--EEEEEccCCCCcCCHHHHHHhcCCC-CEEEEEECcCCCccchhhHH
Confidence 37899999888777665555555555576 4455566677889999999999765 45555544 4444 445999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Ccc
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGI 257 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~ 257 (1342)
+|.++|+++|++|++|++|+.|...... . ...+|++++|+||.+ ||.| |+++.+++....+..... .+.
T Consensus 165 ~I~~la~~~g~~vivD~a~~~g~~~~~~--~-~~~~D~~~~s~~K~~-gp~g~G~l~~~~~~~~~~~~~~~g~~~~~~~~ 240 (404)
T PRK14012 165 AIGEICRERGIIFHVDAAQSVGKVPIDL--S-KLKVDLMSFSAHKIY-GPKGIGALYVRRKPRVRLEAQMHGGGHERGMR 240 (404)
T ss_pred HHHHHHHHcCCEEEEEcchhcCCcccCc--c-cCCCCEEEEehhhcc-CCCceEEEEEecCCCCCCCceecCCCccCCcc
Confidence 9999999999999999999877652111 0 113799999999977 7877 888887654322221101 122
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEe
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIV 307 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~ 307 (1342)
.++++.+...++..++.... .+.....++..+.++++.+.|.+. ++.+.
T Consensus 241 ~gt~~~~~~~~l~~al~~~~-~~~~~~~~~~~~l~~~l~~~L~~~~~i~~~ 290 (404)
T PRK14012 241 SGTLPTHQIVGMGEAARIAK-EEMATENERIRALRDRLWNGIKDIEEVYLN 290 (404)
T ss_pred CCCcCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHHHhcCCCEEEe
Confidence 34455555555555544333 255667788899999999998874 45543
No 252
>PLN02368 alanine transaminase
Probab=99.75 E-value=1.3e-16 Score=191.65 Aligned_cols=252 Identities=9% Similarity=0.028 Sum_probs=174.5
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHcc-CCCCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVL-NPGDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~-~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
.|+...+..+|++++++++.+.+|.+ +.+++++|+++|+..++.+++ +|||+|+++.+.++.+ ...+...|.
T Consensus 102 ~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~~~pGd~Vli~~P~Y~~y---~~~~~~~g~- 177 (407)
T PLN02368 102 AYSDSRGLPGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVIRGEKDGVLVPVPQYPLY---SATISLLGG- 177 (407)
T ss_pred CCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHcCCCCCEEEEeCCCCccH---HHHHHHcCC-
Confidence 45666677789998888888876743 455566578889999999997 7999999877555544 445566676
Q ss_pred eEEEEecCC--CCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhh
Q psy13354 140 FNSICYGLN--KKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGL 207 (1342)
Q Consensus 140 ~~~v~~~~~--~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~ 207 (1342)
++++++.+ ++|.+|++.+++.+++. +++++++++|+|| +...+++|+++|++||++||+||+|....
T Consensus 178 -~~v~v~~~~~~~~~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~s~e~l~~l~~~a~~~~~~II~DE~Y~~l~ 256 (407)
T PLN02368 178 -TLVPYYLEESENWGLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCLSEANLREILKFCYQERLVLLGDEVYQQNI 256 (407)
T ss_pred -EEEEEecccccCCCCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccCCHHHHHHHHHHHHHcCCEEEEEccccccc
Confidence 45555554 45889999999988741 4566666666666 33378999999999999999999998765
Q ss_pred hhcC-CCCCCC----------C-C-CcEEEecCCccCCCCCe---eEEEE---echhHHHHhhccCCccccCCcHHHHHH
Q psy13354 208 IAAG-EYPNPV----------P-F-ADFITSTTHKSLRGPRG---GFILM---KKKYKKIINSAVFPGIQGGPLMHVIAA 268 (1342)
Q Consensus 208 ~~~~-~~~~~l----------~-~-~Divv~S~sK~l~gp~G---G~iv~---~~~l~~~l~~~~~~~~~~~~~~~~~~A 268 (1342)
+... .+.+.. . . ..++++||||.|.|++| ||+++ ++++++.+.... .. ..+++.+.+.+
T Consensus 257 y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~GlRiGy~i~~~~~~~li~~~~~~~-~~-~~~~~~~~Q~a 334 (407)
T PLN02368 257 YQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQRGGYFEMTNIPPKTVEEIYKVA-SI-ALSPNVSGQIF 334 (407)
T ss_pred cCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCccceEEEEEeCCCHHHHHHHHHHh-cc-cCCCCcHHHHH
Confidence 5332 222211 0 1 24778999999844556 99994 778888877642 22 22344566666
Q ss_pred HHHHHHHhc---------cchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC
Q psy13354 269 KAVAFKEVL---------KPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 269 aa~al~~~l---------~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
+..++.... .+..+++.+.+.++++.+.+.|.+. |+.+. .+.+++++|.+++-+
T Consensus 335 a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~~g~~~~-~P~Gafy~~~~i~lp 398 (407)
T PLN02368 335 MGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSCKNVVCN-FTEGAMYSFPQIKLP 398 (407)
T ss_pred HHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEeC-CCCeeeEeccCCCCC
Confidence 665653210 0122346788899999999999986 77764 367889999776543
No 253
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=99.75 E-value=1.5e-16 Score=187.64 Aligned_cols=289 Identities=14% Similarity=0.015 Sum_probs=184.9
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
..+.+..|+|++++. ..+ +.| +. +...+|.+ .+++++|.+ ..+++++|+++++..++
T Consensus 17 ~~i~l~~Nenp~~~~------~~~-~~Y----p~-------~~~~~lr~----~ia~~~~~~~~~I~it~Gs~~~l~~~~ 74 (332)
T PRK06425 17 RIIDFSANINDFMDI------GDI-SIY----PE-------ISYTDIED----QIKIYTQGLKIKVLIGPGLTHFIYRLL 74 (332)
T ss_pred CEEEeccccCCCcCh------hhc-ccC----cC-------cCHHHHHH----HHHHHhCCCcceEEECCCHHHHHHHHH
Confidence 568899999988521 111 122 21 11234444 889999987 44555657777998888
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----ccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~ 181 (1342)
. +++||+ |+++. |++..+...+...|. ++++++.++ +.+|++.++ ..+++++++++++|| ...
T Consensus 75 ~-~~~~~~-vv~~~---P~y~~y~~~~~~~G~--~v~~vp~~~-~~~~~~~l~----~~~~k~v~l~nP~NPTG~~~s~~ 142 (332)
T PRK06425 75 S-YINVGN-IIIVE---PNFNEYKGYAFTHGI--RISALPFNL-INNNPEILN----NYNFDLIFIVSPDNPLGNLISRD 142 (332)
T ss_pred H-HhCCCc-EEEeC---CChHHHHHHHHHcCC--eEEEEeCCc-ccCcHHHHh----hcCCCEEEEeCCCCCcCCccCHH
Confidence 6 567775 55445 444455566677787 445555543 334555444 235677777777777 223
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCC-CCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGE-YPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
.+++|+++|+++|++||+||+|......... .....+. ..++++||||++ |.+| ||+++++++++.+.....+
T Consensus 143 ~~~~l~~~a~~~~~~iI~DE~Y~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~-~l~GlRiGy~v~~~~li~~l~~~~~~ 221 (332)
T PRK06425 143 SLLTISEICRKKGALLFIDEAFIDFVPNRAEEDVLLNRSYGNVIIGRSLTKIL-GIPSLRIGYIATDDYNMKISRKITEP 221 (332)
T ss_pred HHHHHHHHHHHcCCEEEEecchhccccccchhHHHHhccCCCEEEEeecHHhc-CCchhhheeeecCHHHHHHHHHcCCC
Confidence 5788899999999999999998754331100 0001111 247889999999 7777 9999999999888875444
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+..+ .+...+ . .... ...+.+..++.+.++++++.+.|.+.|+.+.. ++.++++|+.++ .+.++...+++
T Consensus 222 ~~~~---~~~~~~-l-~~~~-~~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~-~~~g~f~~~~~~---~~~~~~~~l~~ 291 (332)
T PRK06425 222 WSVC---DPAIDF-I-RSID-LDYVAKHSLDIMENERSYLINNLEAMGFRAAG-DPSANFITFMIP---DAHDFYSYLLK 291 (332)
T ss_pred CccC---HHHHHH-H-HHhh-hHHHHHHHHHHHHHHHHHHHHHHHHCCCEECC-CCCceEEEEEcC---CHHHHHHHHHH
Confidence 3222 111111 1 1111 12234567888999999999999998887643 346778999876 34567777665
Q ss_pred HCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+||.+.++..++..+ .+++|++++..
T Consensus 292 -~gi~v~~~~~f~~~~----~~~iRis~~~~ 317 (332)
T PRK06425 292 -NGILVRLLDDYECLG----EQYIRIAIRRR 317 (332)
T ss_pred -CCeEEEECCCCCCCC----CCEEEEEeCCH
Confidence 599999876553221 35799998864
No 254
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.75 E-value=5e-17 Score=189.36 Aligned_cols=201 Identities=19% Similarity=0.255 Sum_probs=159.0
Q ss_pred CCccccccchhhHHHHHHHHHc----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 388 SNFNTLIGQNHISKSLINALDK----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~~----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
++|++++||+++++.|..++.. +..++.++|+||||+|||++|+.+++.+++
T Consensus 1 ~~~~~~iG~~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~------------------------ 56 (305)
T TIGR00635 1 KLLAEFIGQEKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGV------------------------ 56 (305)
T ss_pred CCHHHHcCHHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------------------------
Confidence 4799999999999999888862 233445899999999999999999999863
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC------------------
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE------------------ 525 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~------------------ 525 (1342)
++...+.+......++...+... +...+++|||+|.++....+.|+..+++
T Consensus 57 -----~~~~~~~~~~~~~~~l~~~l~~~------~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~ 125 (305)
T TIGR00635 57 -----NLKITSGPALEKPGDLAAILTNL------EEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSARSVRL 125 (305)
T ss_pred -----CEEEeccchhcCchhHHHHHHhc------ccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccccceee
Confidence 12222222222223444444332 3456999999999998888888877653
Q ss_pred CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHH
Q psy13354 526 PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 526 p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl 604 (1342)
+.+..++|.+++.+.++.+++.+|| ..+.|.+++.+++.+++.+.+...++.+++++++.|++.++|++|.+.+.++++
T Consensus 126 ~~~~~~li~~t~~~~~l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~pR~~~~ll~~~ 205 (305)
T TIGR00635 126 DLPPFTLVGATTRAGMLTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGTPRIANRLLRRV 205 (305)
T ss_pred cCCCeEEEEecCCccccCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCCcchHHHHHHHH
Confidence 2234788999999999999999999 678999999999999999999999999999999999999999999999999987
Q ss_pred Hhhc----CCCCCHHHHHHHhcc
Q psy13354 605 INYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 605 ~~~~----~~~It~e~V~~~v~~ 623 (1342)
..++ ...|+.++|++.+..
T Consensus 206 ~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 206 RDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred HHHHHHcCCCCcCHHHHHHHHHH
Confidence 6553 245899998877744
No 255
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=99.74 E-value=8.1e-16 Score=186.50 Aligned_cols=321 Identities=15% Similarity=0.087 Sum_probs=198.0
Q ss_pred ceeee-ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 29 NIELI-ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~-a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
.+-|. ++..+.|+.+.+++.+.+. .+..+...+ ++.+......+.+++++ + +++|++ +.+++++|+|+++..++
T Consensus 28 ~iyld~~a~g~~p~~v~~a~~~~~~-~~~~~~~~~-~~~~~~~~~~~~~~~~~-~-~l~g~~~~~v~~~~~~t~~l~~~~ 103 (406)
T TIGR01814 28 VIYLDGNSLGLMPKAARNALKEELD-KWAKIAIRG-HNTGKAPWFTLDESLLK-L-RLVGAKEDEVVVMNTLTINLHLLL 103 (406)
T ss_pred cEEecCCCcCcCcHHHHHHHHHHHH-HHHHhhhcc-CccCCCChhhhhhhhcc-c-cccCCCCCcEEEeCCchHHHHHHH
Confidence 35455 3445666668888877663 332221111 11111122233333333 4 788987 56777779999999999
Q ss_pred HHccCCCC---EEEEeeccCCccchhhH-HhhhCCceeE--EEEecCCCCCCCCHHHHHHHHHh--cCCeEEEEcC-CCC
Q psy13354 107 FSVLNPGD---TIMGMSLQEGGHLTHGM-MLNMSGKWFN--SICYGLNKKEKIDYKKVEYLAKK--NKPKLIIAGA-SAY 177 (1342)
Q Consensus 107 ~al~~pGD---~Vlv~~~~~~~~~s~~~-~~~~~g~~~~--~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~~~-s~~ 177 (1342)
.+++.+|+ .|++...+|++....+. .+...|..+. .+.++.+.++.+|++++++.+.. .++++++++. ++.
T Consensus 104 ~~~~~~~~~~~~i~~~~~~~~s~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~ 183 (406)
T TIGR01814 104 ASFYKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLTVEESMVQIEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYY 183 (406)
T ss_pred HHhcCCcCCccEEEecCCCCChHHHHHHHHHHhcCCCcccceEEeccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccc
Confidence 98876653 56766666655333222 3345566442 23445555678899999988853 2345555544 443
Q ss_pred C-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC--
Q psy13354 178 S-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF-- 254 (1342)
Q Consensus 178 ~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~-- 254 (1342)
+ ...|+++|+++|+++|+++++|++|++|...-+.. ...+|++++|.|||++||+||+++..++....+.....
T Consensus 184 tG~~~~~~~i~~~~~~~g~~~~vD~aq~~G~~~id~~---~~gvD~~~~s~hK~l~g~pG~~l~v~~~~~~~~~p~~~g~ 260 (406)
T TIGR01814 184 TGQLFDMAAITRAAHAKGALVGFDLAHAVGNVPLDLH---DWGVDFACWCTYKYLNAGPGAGAFVHEKHAHTERPRLAGW 260 (406)
T ss_pred cceecCHHHHHHHHHHcCCEEEEEcccccCCcccccc---cCCCCEEEEcCccccCCCCCeEEEEehhhhhhcCCCCCcc
Confidence 3 55599999999999999999999999987621110 11379999999999976667555554433322322111
Q ss_pred --------------------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-----CcEEeeC
Q psy13354 255 --------------------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-----GIRIVSG 309 (1342)
Q Consensus 255 --------------------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-----g~~~~~~ 309 (1342)
.+..++++.+...++..++......+.+...++..++++++.+.|.+. |+++..+
T Consensus 261 ~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~ 340 (406)
T TIGR01814 261 WGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALRGSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITP 340 (406)
T ss_pred cCCCCccccccccccCCCccceeeCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCC
Confidence 111355667777777777766655578888999999999999999874 3766553
Q ss_pred CC---CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc-ccccc
Q psy13354 310 GT---KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS-AITTR 369 (1342)
Q Consensus 310 ~~---~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~-~~~t~ 369 (1342)
.. ...++.+.++ ....++...| .++||.+... . .+.+|+|++ .+++.
T Consensus 341 ~~~~~r~~~v~~~~~--~~~~~~~~~L-~~~gi~v~~~-------~---~~~iRiS~~~~~nt~ 391 (406)
T TIGR01814 341 RDHAQRGCQLSLTHP--VPGKAVFQAL-IKRGVIGDKR-------E---PSVIRVAPVPLYNTF 391 (406)
T ss_pred CChhhcCCeEEEEec--CCHHHHHHHH-HHCCEEEecc-------C---CCeEEEechhccCCH
Confidence 21 1345666655 2234555555 5569987521 1 246999984 56653
No 256
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=99.74 E-value=9.1e-16 Score=184.45 Aligned_cols=287 Identities=16% Similarity=0.129 Sum_probs=184.1
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEE
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTI 116 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~V 116 (1342)
.++...++++.+.+.... +..++...++++ .+++++|.+++++++ ||++|+..++.++ ++|||+|
T Consensus 7 ~~~~~~~~~v~~~~~~~~---------~~~g~~~~~le~----~la~~~g~~~~v~~~-sgt~al~~~l~al~~~~Gd~V 72 (380)
T TIGR03588 7 SIDQDDIDAVVEVLKSDF---------LTQGPTVPAFEE----ALAEYVGAKYAVAFN-SATSALHIACLALGVGPGDRV 72 (380)
T ss_pred CCCHHHHHHHHHHHhcCC---------ccCChhHHHHHH----HHHHHHCCCeEEEEc-CHHHHHHHHHHHcCCCCCCEE
Confidence 345556667666664211 222344455555 899999998887777 9999999999999 8999999
Q ss_pred EEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHh---cCCeEEEEcCCCCCcccCHHHHHHHHHH
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKK---NKPKLIIAGASAYSQYIDFERFYHIAKN 192 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~---~~~~liv~~~s~~~~~~~l~~I~~la~~ 192 (1342)
+++++.+. +....+...|. +++.++.+ +++.+|++++++.+++ .++++++.++ .++...++++|.++|++
T Consensus 73 iv~~~~~~---~~~~~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~-~~G~~~~~~~i~~l~~~ 146 (380)
T TIGR03588 73 WTTPITFV---ATANCALYCGA--KVDFVDIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD-FAGKSVDMQAIAALAKK 146 (380)
T ss_pred EeCCcchH---HHHHHHHHcCC--EEEEEecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC-CCCccCCHHHHHHHHHH
Confidence 98775553 33445566777 45555654 4678999999999983 2445555432 23455689999999999
Q ss_pred cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEec-hhHHHHhhccCCc-------------
Q psy13354 193 INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMKK-KYKKIINSAVFPG------------- 256 (1342)
Q Consensus 193 ~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~------------- 256 (1342)
||++||+|++|++|....+...+.....|+.++|+| |+++++.||++++++ ++.+.++......
T Consensus 147 ~~~~lI~D~a~a~g~~~~~~~~g~~~~~d~~~~S~~~~K~~~~~~GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 226 (380)
T TIGR03588 147 HGLKIIEDASHALGAEYGGKPVGNCRYADATVFSFHPVKIITTAEGGAVTTNDEELAERMRLLRSHGITKDPLLFEKQDE 226 (380)
T ss_pred cCCEEEEECCCcccCccCCEeCCCccccceEEEecCCCCcccccCceEEEECCHHHHHHHHHHHHCCCCCCccccccccc
Confidence 999999999999886544433333224599999987 999777888888764 5555544311100
Q ss_pred ----------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCC----CeEEEEEcc
Q psy13354 257 ----------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTK----SHIILVDLR 321 (1342)
Q Consensus 257 ----------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~----~~~v~i~~~ 321 (1342)
.++..++...++...+.++ .++...++.+++++++.+.|.+.+ +.+...+.+ .+..++.+.
T Consensus 227 ~~~~~~~~~~g~n~~m~~l~aa~g~~qL~----~l~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~ 302 (380)
T TIGR03588 227 GPWYYEQQELGFNYRMTDIQAALGLSQLK----KLDRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHLYPILLD 302 (380)
T ss_pred CcceeeeeccccccCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEEEEEEEC
Confidence 0111122333333333222 356677888999999999998864 332221111 123334443
Q ss_pred C-CCCCHHHHHHHHHHCCceeeeccCCC
Q psy13354 322 N-KKITGKIAESILESANIICNKNSIPN 348 (1342)
Q Consensus 322 ~-~~~~~~~~~~ll~~~GI~v~~~~~p~ 348 (1342)
. .+.+.+.+...|+++||.+...+.|.
T Consensus 303 ~~~~~~r~~l~~~L~~~gI~~~~~~~~~ 330 (380)
T TIGR03588 303 QEFGCTRKEVFEALRAAGIGVQVHYIPV 330 (380)
T ss_pred CcCCCCHHHHHHHHHHCCCCcccCCccc
Confidence 2 22345556666677799998765554
No 257
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=99.74 E-value=5.5e-16 Score=183.93 Aligned_cols=290 Identities=14% Similarity=0.112 Sum_probs=195.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCC---CCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCcee
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNA---EAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWF 140 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~---~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~ 140 (1342)
.+....+..++++.+++.+...++. ...+++++||++++..++.++..+||+|+++. +++.++...+...|.
T Consensus 31 ~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~~~~g~~vl~~~---~~~~~~~~~~~~~~~-- 105 (350)
T cd00609 31 GYYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRALLNPGDEVLVPD---PTYPGYEAAARLAGA-- 105 (350)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHhCCCCCEEEEcC---CCchhHHHHHHHCCC--
Confidence 3455667778999888888777652 23455555999999999999999999999766 445555566667776
Q ss_pred EEEEecCCCCCCCCH--HHHHHHHHhcCCeEEEEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCC
Q psy13354 141 NSICYGLNKKEKIDY--KKVEYLAKKNKPKLIIAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEY 213 (1342)
Q Consensus 141 ~~v~~~~~~~~~id~--e~Le~~i~~~~~~liv~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~ 213 (1342)
.++.++.++++..+. +.++....+ .++++++++++++ ...+ +.+|+++|+++|+++|+|++|+.+.......
T Consensus 106 ~~~~i~~~~~~~~~~~~~~~~~~~~~-~~~~v~i~~~~~~tG~~~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~~~~~~ 184 (350)
T cd00609 106 EVVPVPLDEEGGFLLDLELLEAAKTP-KTKLLYLNNPNNPTGAVLSEEELEELAELAKKHGILIISDEAYAELVYDGEPP 184 (350)
T ss_pred EEEEEecccccCCccCHHHHHhhcCc-cceEEEEECCCCCCCcccCHHHHHHHHHHHHhCCeEEEEecchhhceeCCccc
Confidence 444445555554444 556655443 4566665555554 2334 5666699999999999999997655432221
Q ss_pred ---CCC-CCCCcEEEecCCccCC-CC-CeeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHH
Q psy13354 214 ---PNP-VPFADFITSTTHKSLR-GP-RGGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQK 286 (1342)
Q Consensus 214 ---~~~-l~~~Divv~S~sK~l~-gp-~GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~ 286 (1342)
... ....|++++|+||+++ ++ ..|++++++ ++.+.+...... ...+++.+.+.++..++.... ++.+...+
T Consensus 185 ~~~~~~~~~~~~~~~~s~~K~~~~~g~~~G~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~ 262 (350)
T cd00609 185 PALALLDAYERVIVLRSFSKTFGLPGLRIGYLIAPPEELLERLKKLLPY-TTSGPSTLSQAAAAAALDDGE-EHLEELRE 262 (350)
T ss_pred ccccCcCccCcEEEEeecccccCCcccceEEEecCHHHHHHHHHHHHHh-cccCCChHHHHHHHHHHhCcH-HHHHHHHH
Confidence 111 1125889999999994 22 239999999 788888764332 233444555555554444332 46778889
Q ss_pred HHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 287 QVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 287 ~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++.++++++.+.|.+.+......+..++++|+.++.. .+.+.+.+++.++||.+.+...+.... ..++|++++..
T Consensus 263 ~~~~~~~~l~~~L~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~l~~~gi~i~~~~~~~~~~----~~~iRi~~~~~ 337 (350)
T cd00609 263 RYRRRRDALLEALKELGPLVVVKPSGGFFLWLDLPEG-DDEEFLERLLLEAGVVVRPGSAFGEGG----EGFVRLSFATP 337 (350)
T ss_pred HHHHHHHHHHHHHHhcCCccccCCCccEEEEEecCCC-ChHHHHHHHHHhCCEEEecccccccCC----CCeEEEEeeCC
Confidence 9999999999999997654323345678888887654 345677888888899998765444211 35799998886
No 258
>KOG1357|consensus
Probab=99.74 E-value=5.7e-17 Score=182.34 Aligned_cols=318 Identities=22% Similarity=0.261 Sum_probs=233.6
Q ss_pred eeecCCCCcHH-----HHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHH
Q psy13354 32 LIASENYTSLA-----VMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAV 105 (1342)
Q Consensus 32 l~a~~n~l~~~-----v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~a 105 (1342)
...+-||++.+ +.++..+.+. .|.....+++.. +....+.++|+ ..++++|.+++++|. .|...+.+.
T Consensus 140 NlgSYNYLGFa~~~g~ca~~~~~~~~-kygl~~css~~e~G~~~~hkelE~----l~A~f~g~e~a~vF~-mGf~TNs~~ 213 (519)
T KOG1357|consen 140 NLGSYNYLGFAQSVGPCAEASLKSFD-KYGLSRCSSRHEAGTTEEHKELEE----LVARFLGVEDAIVFS-MGFATNSMN 213 (519)
T ss_pred eecccccccccccCCcCChHHHHHHH-HhcccccccchhcccHHHHHHHHH----HHHHhcCCcceEEEe-ccccccccC
Confidence 45667998887 6666566663 676666555554 44555566666 999999999999999 889999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---------CC--eEEEEcC
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---------KP--KLIIAGA 174 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---------~~--~liv~~~ 174 (1342)
+.+++.||.-|+.-...|.... .-++..|+..++. .++ |..++++.+++. +| +++++..
T Consensus 214 ~p~l~~~gsLIiSDelNHaSi~---~GaRLSgAtiRVf--kHN-----dm~~LEr~Lrd~I~~gqP~Thrp~kki~iive 283 (519)
T KOG1357|consen 214 IPSLLGKGSLIISDELNHASLI---TGARLSGATTRVF--RHN-----DMQGLERLLRDAIVYGQPKTHRPWKKILICVE 283 (519)
T ss_pred cceeecCCcceeeccccchhee---ccccccCceEEEE--ecC-----CHHHHHHHHHHHHhcCCCCcCCcchheeeeec
Confidence 9999999999986554443322 2235566644444 555 666777766531 12 4555555
Q ss_pred CCCC---cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCCCCC-CCcEEEecCCccCCCCCeeEEEEechh
Q psy13354 175 SAYS---QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPVP-FADFITSTTHKSLRGPRGGFILMKKKY 245 (1342)
Q Consensus 175 s~~~---~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~~l~-~~Divv~S~sK~l~gp~GG~iv~~~~l 245 (1342)
+.++ ...++.++++++++|.++|+.||||+.|+.+.. .+..+-+ .+|+++++|.|.+ |..||++.+++++
T Consensus 284 giysmEg~iv~Lp~vvalkkkykayl~lDEAHSiGA~g~tGrgvce~~g~d~~dvDImMGtftKSf-ga~GGyiagsk~l 362 (519)
T KOG1357|consen 284 GIYSMEGTIVDLPEVVALKKKYKAYLYLDEAHSIGAMGATGRGVCEYFGVDPEDVDIMMGTFTKSF-GAAGGYIAGSKEL 362 (519)
T ss_pred cceeccCeecccHHHHHhhccccEEEEeeccccccccCCCCcceeeccCCCchhheeecceehhhc-ccccceecCcHHH
Confidence 5554 556999999999999999999999999988542 2222222 3789999999999 8889999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEc
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-----KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-----~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~ 320 (1342)
++.++.......+.++.+|..++......... ....++..+++.+|+.+++..|.+.||-+.. ..+++++++-+
T Consensus 363 id~lrt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~gfivyG-~~dSpVvplll 441 (519)
T KOG1357|consen 363 IDYLRTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMGFIVYG-NNDSPVVPLLL 441 (519)
T ss_pred HhhhccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCcEEEec-CCCCCcceeee
Confidence 99999877777777777777776655555553 2346778899999999999999999988754 45667777666
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGF 371 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~ 371 (1342)
-.+..-..+-++++++ +|.+....+|..|- ..++.|++.++.++.++
T Consensus 442 ~~~~k~~~f~r~~l~~-nigvVvvgfPatpl---~e~r~R~c~Sa~ht~e~ 488 (519)
T KOG1357|consen 442 YGPAKIVAFSREMLER-NIGVVVVGFPATPL---LESRARFCLSASHTKED 488 (519)
T ss_pred cCcccccHHHHHHHhc-CceEEEEeCCCchH---HHhHHHhhhcccccHHH
Confidence 5555455777788876 88888777777653 36789999999998654
No 259
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=99.74 E-value=2.8e-16 Score=166.93 Aligned_cols=181 Identities=19% Similarity=0.215 Sum_probs=154.4
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCc-ccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC--
Q psy13354 400 SKSLINALDKKRLHHAYLFTGTRG-VGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA-- 476 (1342)
Q Consensus 400 ~~~L~~~l~~~~~~~~~Ll~G~~G-~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~-- 476 (1342)
++.+.+.+++++++|+|||+|..+ ++|..++..+++.+.|. .+..+.|||+..+...
T Consensus 2 ~~~L~~~iq~~kLshAYLfeG~n~~~~~~~~~~f~~~~l~~~--------------------~i~~~~HPD~~~I~pe~~ 61 (263)
T PRK06581 2 IERLEFNLKHNKLYNSWLIEAENIEQALKDLEKFIYIKLFKN--------------------SIPLENNPDYHFIARETS 61 (263)
T ss_pred hHHHHHHHHcCcchheeeEeCCChhhHHHHHHHHHHHHHhcc--------------------CcccCCCCCEEEEecccc
Confidence 468899999999999999999997 99999999999998753 3567889999988643
Q ss_pred -----CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEE
Q psy13354 477 -----STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI 551 (1342)
Q Consensus 477 -----~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~ 551 (1342)
..-+++++|++.+.+...|..+++||++|++++.|+.++.|+|||+||+||++++||++|+++..+++||+|||+
T Consensus 62 ~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViII~~ae~mt~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRCq 141 (263)
T PRK06581 62 ATSNAKNISIEQIRKLQDFLSKTSAISGYKVAIIYSAELMNLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRCF 141 (263)
T ss_pred ccccCCcccHHHHHHHHHHHhhCcccCCcEEEEEechHHhCHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhceE
Confidence 245789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 552 QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 552 ~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
.+.|..+......++....+... .+..-++.|.+....|......-.+.
T Consensus 142 ~i~~~~p~~~~~~e~~~~~~~p~---~~~~~l~~i~~~~~~d~~~w~~~~~~ 190 (263)
T PRK06581 142 KINVRSSILHAYNELYSQFIQPI---ADNKTLDFINRFTTKDRELWLDFIDN 190 (263)
T ss_pred EEeCCCCCHHHHHHHHHHhcccc---cccHHHHHHHHHhhhhHHHHHHHHHH
Confidence 99999999988887776554433 34455888888766666655544443
No 260
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=99.74 E-value=1.2e-16 Score=189.66 Aligned_cols=267 Identities=15% Similarity=0.168 Sum_probs=179.4
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccC------------CCC--EEEEeeccCCccc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLN------------PGD--TIMGMSLQEGGHL 127 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~------------pGD--~Vlv~~~~~~~~~ 127 (1342)
|...+...++++++++++++++|.+ ..+++++|||+|+..++.++.. +++ .|+++.. .|.
T Consensus 30 y~~~~~~~~le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~h~ 106 (345)
T cd06450 30 WDESPAATEMEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQ---AHV 106 (345)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCc---chh
Confidence 5556677899999999999999975 3456666999999999988742 333 5665553 344
Q ss_pred hhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEE
Q psy13354 128 THGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVD 200 (1342)
Q Consensus 128 s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvD 200 (1342)
+........|. +++.++.++++.+|++++++.+++. ++++++++.++++ ...++++|+++|+++|+++++|
T Consensus 107 ~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~~~~i~~~~~~~~~~l~vD 184 (345)
T cd06450 107 SVEKAAAYLDV--KVRLVPVDEDGRMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDPLEEIADLAEKYDLWLHVD 184 (345)
T ss_pred HHHHHHHHHhc--CeEEeeeCCCCCcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCCHHHHHHHHHHhCCeEEEe
Confidence 44444455565 4555566666789999999999761 3455555444433 5559999999999999999999
Q ss_pred cccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh
Q psy13354 201 MAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV 276 (1342)
Q Consensus 201 ea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~ 276 (1342)
++|+.+........ .....+|++++|+||++++|.| |+++.+ ..++..++...
T Consensus 185 ~a~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~g~g~~~~~-----------------------~~~~~~~l~~l 241 (345)
T cd06450 185 AAYGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPLGCSAVLVR-----------------------ALKLWATLRRF 241 (345)
T ss_pred chhhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCcchHHHHHH-----------------------HHHHHHHHHHH
Confidence 99987765321111 1123479999999999977777 776555 22233333333
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC----CCCHHHHHHHHHHCCceeeeccCCCCCC
Q psy13354 277 LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK----KITGKIAESILESANIICNKNSIPNDPE 351 (1342)
Q Consensus 277 l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~----~~~~~~~~~ll~~~GI~v~~~~~p~~~~ 351 (1342)
...++++..++..++++++.+.|.+. ++++.. ++..+++.+.+++. ..+.++...+.+ +|+++.+...+.
T Consensus 242 ~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~-~g~~~~~~~~~~--- 316 (345)
T cd06450 242 GRDGYGEHIDRIVDLAKYLAELIRADPGFELLG-EPNLSLVCFRLKPSVKLDELNYDLSDRLNE-RGGWHVPATTLG--- 316 (345)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCceeEEEEEECCcchhhHHHHHHHHHHHh-cCCEEEEeeEEC---
Confidence 33467788899999999999999886 576644 33466777776642 223455555554 455444322111
Q ss_pred Cccccccccccccccc
Q psy13354 352 KPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 352 ~~~~~~~lRi~~~~~~ 367 (1342)
....+|++++..+
T Consensus 317 ---~~~~lRis~~~~~ 329 (345)
T cd06450 317 ---GPNVLRFVVTNPL 329 (345)
T ss_pred ---CeEEEEEEecCCC
Confidence 1357999998764
No 261
>PRK03321 putative aminotransferase; Provisional
Probab=99.74 E-value=2.3e-16 Score=187.76 Aligned_cols=298 Identities=13% Similarity=0.127 Sum_probs=193.9
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+++.. ++.+.+++.+.+.. . ..|+ ..+..++++ .++++++.+ +.+++++|+++++..
T Consensus 23 ~~i~l~~~~~~~~~~~~~~~a~~~~~~~-~-~~y~-------~~g~~~lr~----~ia~~~~~~~~~I~~~~G~~~~l~~ 89 (352)
T PRK03321 23 GAIKLSSNETPFGPLPSVRAAIARAAAG-V-NRYP-------DMGAVELRA----ALAEHLGVPPEHVAVGCGSVALCQQ 89 (352)
T ss_pred cceeccCCCCCCCCCHHHHHHHHHHHHh-c-CcCC-------CCcHHHHHH----HHHHHhCcCHHHEEECCCHHHHHHH
Confidence 457788776654 33488888776632 1 1222 223445555 777888876 456666466668888
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++++|||+|+++.+.++ .........|. +++.++.++++.+|++.+++.+++ ++++++++++++| ...+
T Consensus 90 ~~~~~~~~gd~Vli~~p~y~---~~~~~~~~~g~--~~~~v~~~~~~~~~~~~l~~~~~~-~~~~v~l~~p~NPtG~~~~ 163 (352)
T PRK03321 90 LVQATAGPGDEVIFAWRSFE---AYPILVQVAGA--TPVQVPLTPDHTHDLDAMAAAITD-RTRLIFVCNPNNPTGTVVT 163 (352)
T ss_pred HHHHhcCCCCEEEeCCCCHH---HHHHHHHHcCC--EEEEccCCCCCCCCHHHHHHhhcc-CCCEEEEeCCCCCcCCCcC
Confidence 88888999999997654433 23333455566 556666665678899999998876 4556555555665 4448
Q ss_pred HHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC---C--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhc
Q psy13354 183 FERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP---F--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSA 252 (1342)
Q Consensus 183 l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~---~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~ 252 (1342)
.++|.++|+. +|++||+|++|....+.. .....+. . -.++++|+||.| |.+| ||+++++++++.+...
T Consensus 164 ~~~l~~l~~~~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~~~vi~~~S~SK~~-g~~GlRiG~~v~~~~~~~~~~~~ 241 (352)
T PRK03321 164 PAELARFLDAVPADVLVVLDEAYVEYVRDD-DVPDGLELVRDHPNVVVLRTFSKAY-GLAGLRVGYAVGHPEVIAALRKV 241 (352)
T ss_pred HHHHHHHHHhCCCCeEEEEechHHHhccCc-CCCcHHHHHhhCCCEEEEecchHHh-hhHHHhhhhhcCCHHHHHHHHHh
Confidence 9999999987 599999999987544422 1111111 1 247789999999 6666 9999999999988764
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
...+ +.+.+.+.++..++.. .. .+.+..+++.++++.+.+.|.+.|+.+. +.+++++|+.++. .+.++...
T Consensus 242 ~~~~---~~s~~~q~~a~~~l~~-~~-~~~~~~~~~~~~r~~~~~~L~~~~~~~~--~~~g~~i~i~l~~--~~~~~~~~ 312 (352)
T PRK03321 242 AVPF---SVNSLAQAAAIASLAA-ED-ELLERVDAVVAERDRVRAALRAAGWTVP--PSQANFVWLPLGE--RTADFAAA 312 (352)
T ss_pred cCCC---CCCHHHHHHHHHHhcC-HH-HHHHHHHHHHHHHHHHHHHHHHCCCccC--CCCCCEEEEeCCC--CHHHHHHH
Confidence 3322 2234444444434332 22 3344455666777888899988887652 3457889998753 23455655
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+ +++||.+.++ + ..++|++++..
T Consensus 313 l-~~~gI~v~~~---~-------~~~iRi~~~~~ 335 (352)
T PRK03321 313 A-AEAGVVVRPF---A-------GEGVRVTIGAP 335 (352)
T ss_pred H-HHCCEEEEcc---C-------CCcEEEeeCCH
Confidence 5 5679999752 1 23599998654
No 262
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=99.74 E-value=4.2e-16 Score=185.32 Aligned_cols=301 Identities=13% Similarity=0.074 Sum_probs=192.0
Q ss_pred ceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHH
Q psy13354 29 NIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~a 105 (1342)
.+.+..+++.. ++.+.+++.+.+.. ...|+ . ....++++ .++++++.+ +.+++++|+++++..+
T Consensus 21 ~~~l~~~~~~~~~p~~~~~a~~~~~~~--~~~Y~------~-~~~~~lr~----~ia~~~~~~~~~i~it~Ga~~~l~~~ 87 (354)
T PRK06358 21 ILDFSANINPLGVPESLKQAITENLDK--LVEYP------D-PDYLELRK----RIASFEQLDLENVILGNGATELIFNI 87 (354)
T ss_pred eEEecCCCCCCCCCHHHHHHHHHHHHh--hhcCC------C-ccHHHHHH----HHHHHhCCChhhEEECCCHHHHHHHH
Confidence 47777777654 45588887776532 11222 1 12345555 777777776 4555665888899999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS----- 178 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~----- 178 (1342)
+.++ .+ +.|++..+.++. +.......|.. ++.++.+ .++.+| +++.+.+.+ +++++++++|+||
T Consensus 88 ~~~~-~~-~~v~i~~P~y~~---~~~~~~~~g~~--~~~~~~~~~~~~~~d-~~~~~~~~~-~~~~v~~~~P~NPtG~~~ 158 (354)
T PRK06358 88 VKVT-KP-KKVLILAPTFAE---YERALKAFDAE--IEYAELTEETNFAAN-EIVLEEIKE-EIDLVFLCNPNNPTGQLI 158 (354)
T ss_pred HHHh-CC-CcEEEecCChHH---HHHHHHHcCCe--eEEEeCccccCCCcc-HHHHHhhcc-CCCEEEEeCCCCCCCCcc
Confidence 8886 44 678866655543 34444566764 4444544 346788 666555544 4666655566666
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC---CCC--CcEEEecCCccCCCCCe---eEEEEe-chhHHHH
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPF--ADFITSTTHKSLRGPRG---GFILMK-KKYKKII 249 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~--~Divv~S~sK~l~gp~G---G~iv~~-~~l~~~l 249 (1342)
....+++|+++|++||++||+||+|....+.. ...+. .+. .-++++||||.+ |.+| ||++++ +.+++.+
T Consensus 159 ~~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~-~~~~~~~~~~~~~~vi~~~S~SK~~-gl~G~RiG~lv~~~~~~~~~~ 236 (354)
T PRK06358 159 SKEEMKKILDKCEKRNIYLIIDEAFMDFLEEN-ETISMINYLENFKNLIIIRAFTKFF-AIPGLRLGYGLTSNKNLAEKL 236 (354)
T ss_pred CHHHHHHHHHHHHhcCCEEEEeCcccccCCCc-cchhHHHhccCCCCEEEEEechhhc-cCcchhheeeecCCHHHHHHH
Confidence 22258999999999999999999987544322 11111 111 237789999999 7677 999985 5777777
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
......+ +.+.+.+.++..++.+ ..++++.++.+.++++++.+.|++. |+.+.. +.++++|+.+++ ..+
T Consensus 237 ~~~~~~~---~~~~~~q~~~~~~l~~--~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~--~~g~f~~~~~~~---~~~ 306 (354)
T PRK06358 237 LQMREPW---SINTFADLAGQTLLDD--KEYIKKTIQWIKEEKDFLYNGLSEFKGIKVYK--PSVNFIFFKLEK---PID 306 (354)
T ss_pred HHhCCCC---cchHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhcCCCcEEcC--CcceEEEEEcCc---hHH
Confidence 6644332 2223344444444322 1245677888899999999999886 666543 345688998864 256
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++..+++ +||.+.++..++.. ..+++|++++....
T Consensus 307 ~~~~l~~-~gI~v~~~~~f~~~----~~~~iRls~~~~~~ 341 (354)
T PRK06358 307 LRKELLK-KGILIRSCSNYRGL----DENYYRVAVKSRED 341 (354)
T ss_pred HHHHHHH-CCeEEEECCCCCCC----CCCEEEEEeCCHHH
Confidence 7776665 69999987655211 13579999877543
No 263
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=99.73 E-value=4.7e-16 Score=185.05 Aligned_cols=296 Identities=16% Similarity=0.147 Sum_probs=189.5
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
..+.+..|+|+.+|+..-. ...+ +. |+ .. ...+|++ .+++++|.+ +.+++++|+++++..++
T Consensus 32 ~~~~l~~ne~~~~~~~~~~-~~~~-~~----Yp------~~-~~~~Lr~----aia~~~~~~~~~I~it~Gs~~~i~~~~ 94 (354)
T PRK04635 32 GDIWINANESPFNNEYKLD-LARL-NR----YP------EC-QPPELIN----AYSAYAGVAPEQILTSRGADEAIELLI 94 (354)
T ss_pred CcEEeeCCCCCCCCChhhh-hHHh-cc----CC------CC-CHHHHHH----HHHHHhCcCHHHEEEeCCHHHHHHHHH
Confidence 3478999999877762111 0111 11 22 11 1345555 777888877 55566657888999999
Q ss_pred HHccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 107 FSVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 107 ~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
.+++.|| |+|++..+.++ .+.......|. +++.++.++++.+|++.++. + .+++++++++++|| ...+.
T Consensus 95 ~~~~~~g~d~vlv~~P~y~---~y~~~~~~~g~--~v~~v~~~~~~~~~~~~l~~-~--~~~~li~i~nP~NPTG~~~~~ 166 (354)
T PRK04635 95 RAFCEPGQDSIACFGPTYG---MYAISAETFNV--GVKALPLTADYQLPLDYIEQ-L--DGAKLVFICNPNNPTGTVIDR 166 (354)
T ss_pred HHhcCCCCCeEEEcCCChH---HHHHHHHHcCC--EEEEEecCCCCCCCHHHHHh-c--cCCCEEEEeCCCCCCCccCCH
Confidence 9999999 89997665443 33344566677 44555666668889988873 3 35677777777777 44478
Q ss_pred HHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCcc
Q psy13354 184 ERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 184 ~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
+++.++++.. +++||+||+|..... ......... ..-+++.||||++ |++| ||+++++++++.+.....++.
T Consensus 167 ~~l~~l~~~~~~~~vivDeay~~~~~-~~s~~~~~~~~~~~iv~~S~SK~~-~l~GlRlG~~i~~~~~~~~l~~~~~~~~ 244 (354)
T PRK04635 167 ADIEQLIEMTPDAIVVVDEAYIEFCP-EYSVADLLASYPNLVVLRTLSKAF-ALAGARCGFTLANEELIEILMRVIAPYP 244 (354)
T ss_pred HHHHHHHHhCCCcEEEEeCchHhhcc-CcchHHHHhhCCCEEEEechHHHh-hhhHHHHhhhhCCHHHHHHHHhhcCCCC
Confidence 8888888764 699999999865321 100000011 1136789999999 7777 999999999888876433332
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.+.+.+.++..++.+...+..++.++.+.++++++.+.|.+.+ +.+.. +.++++|+.+++ +.++ .+++.+
T Consensus 245 ---~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~--~~g~f~~~~~~~---~~~~-~~~l~~ 315 (354)
T PRK04635 245 ---VPLPVSEIATQALSEAGLARMKFQVLDLNAQGARLQAALSMYGGAKVLE--GNGNYVLAKFDD---VDAV-FKALWD 315 (354)
T ss_pred ---CCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCceECC--CCCcEEEEECCC---HHHH-HHHHHH
Confidence 2234444444343322112455667788888999999999876 66543 456788888762 3344 556667
Q ss_pred CCceeeeccCCCCCCCccccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+||.+..+..+.. .+++|++++.
T Consensus 316 ~gv~v~~~~~~~~------~~~lRis~~~ 338 (354)
T PRK04635 316 AGIVARAYKDPRL------ANCIRFSFSN 338 (354)
T ss_pred CCEEEEECCCCCC------CCeEEEEeCC
Confidence 7999986432211 3579999764
No 264
>PRK02769 histidine decarboxylase; Provisional
Probab=99.73 E-value=1.9e-15 Score=179.42 Aligned_cols=274 Identities=17% Similarity=0.157 Sum_probs=191.8
Q ss_pred hHHHHHHHHHHHHHHHhCCC-Cc--eEecCCHHHHHHHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEE
Q psy13354 70 FIDLIEKIAINRLKKIFNAE-AA--NVQPHSGSQANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC 144 (1342)
Q Consensus 70 ~~~~Le~~~~~~la~~~g~~-~~--vi~~~sGs~A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~ 144 (1342)
...++|+++++++++++|.+ .. .+++++||+++..++.+. ..++++|+++..+| .+....+...|.....+
T Consensus 62 ~~~~~e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~~~~~~ii~s~~~H---~Sv~ka~~~lg~~~~~V- 137 (380)
T PRK02769 62 NSFDFERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLARELFPDGTLYYSKDTH---YSVSKIARLLRIKSRVI- 137 (380)
T ss_pred ChHHHHHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHhCCCcEEEeCCCce---ehHHHHHHHcCCCCcee-
Confidence 35678999999999999986 22 256669999998777654 35788999776544 45555666667655544
Q ss_pred ecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC--cccCHHHHHHHHHHcC---CEEEEEcccchhhhhcCCCCCCC
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS--QYIDFERFYHIAKNIN---SYFMVDMAHYAGLIAAGEYPNPV 217 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~--~~~~l~~I~~la~~~g---i~LIvDea~~~g~~~~~~~~~~l 217 (1342)
+.+++|.+|++++++++.+. ++.+|+++.+++. ...|+++|+++|++|| +|+++|+||+.+.........++
T Consensus 138 -~~~~~g~id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idpi~~I~~i~~~~g~~~~~lHVDaA~gg~~~p~~~~~~~~ 216 (380)
T PRK02769 138 -TSLPNGEIDYDDLISKIKENKNQPPIIFANIGTTMTGAIDNIKEIQEILKKIGIDDYYIHADAALSGMILPFVNNPPPF 216 (380)
T ss_pred -ccCCCCcCcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCCceEEEEEecccceeecccCccccC
Confidence 55568899999999999875 3555555443333 6669999999999998 69999999987665321111122
Q ss_pred C---CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHH
Q psy13354 218 P---FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQ 287 (1342)
Q Consensus 218 ~---~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~ 287 (1342)
+ .+|+++.|.||++++|.| |+++.+++....+... ......|+.+.....+++.++..+..+++++..++
T Consensus 217 d~~~~vDsis~s~HK~~~~P~g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~lg~~G~~~~~~~ 296 (380)
T PRK02769 217 SFADGIDSIAISGHKFIGSPMPCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRSLGSKGLRQRVQH 296 (380)
T ss_pred CccCCCCEEEECCcccCCCCCCcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHHHCHHHHHHHHHH
Confidence 2 479999999999977999 9999998766554321 01122334444566777778777777789999999
Q ss_pred HHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 288 VVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 288 l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
..++++++.+.|.+.|+++...| ..+++.+..+. .++ . + |..+.+. ...+|+++...+
T Consensus 297 ~~~la~~l~~~L~~~g~~~~~~p-~~~~v~f~~~~----~~~----~-~-~w~l~~~-----------~~~~hi~~~~~~ 354 (380)
T PRK02769 297 CLDMAQYAVDRLQANGIPAWRNP-NSITVVFPCPS----ERI----W-K-KWHLATS-----------GNQAHIITMPHH 354 (380)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCC-CceEEEEcCCC----HHH----H-h-CeeEccc-----------CCEEEEEECCCC
Confidence 99999999999999999887643 45555554332 122 1 2 5444422 125899998887
Q ss_pred ccc
Q psy13354 368 TRG 370 (1342)
Q Consensus 368 t~~ 370 (1342)
+.+
T Consensus 355 ~~~ 357 (380)
T PRK02769 355 NKQ 357 (380)
T ss_pred CHH
Confidence 754
No 265
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=99.72 E-value=8.2e-16 Score=183.50 Aligned_cols=302 Identities=12% Similarity=0.067 Sum_probs=188.3
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~ 107 (1342)
.+.+.+++|++++.-.. ...+ ..| + .. ...++++ .+++++|.+ +.+++++|+++++..++.
T Consensus 33 ~~~~~~ne~~~~~~~~~--~~~~-~~Y----~------~~-~~~~lr~----~ia~~~~~~~~~I~~t~G~~~~l~~~~~ 94 (364)
T PRK04781 33 DVWLNANESAWANPADP--DAST-RRY----P------DP-QPPGLRS----ALAALYGCAPEQLLIGRGSDEAIDLLVR 94 (364)
T ss_pred CEEeeCCCCCCCCChhh--cchh-ccC----C------CC-CHHHHHH----HHHHHhCcChHHEEEeCCHHHHHHHHHH
Confidence 46788888887765211 1111 111 1 11 1234444 778888877 455566577889999999
Q ss_pred HccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 108 SVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 108 al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+++.+| |.|+++++.++ .........|..+..+++..+ +.+.+|++++.+.+...+++++++++++|| ...+.
T Consensus 95 ~~~~~g~~~vlv~~p~y~---~~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~~~~~~~~lv~l~~p~NPTG~~~~~ 171 (364)
T PRK04781 95 ALCVPGRDAVLVTPPVFG---MYAVCARLQNAPLVEVPLVDGADGFHADVPAIVAAALASNAKLVFLCSPSNPAGSAIAL 171 (364)
T ss_pred HhcCCCCCeEEEcCCChH---HHHHHHHHcCCEEEEEecCCCccCCCcCHHHHHHHHhccCCeEEEEcCCCCCCCCCcCH
Confidence 999999 78887664433 223334556774444433212 245678998876654456777777777777 33366
Q ss_pred HHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 184 ERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 184 ~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+++.++++. ++++||+||+|...... .......+. .-++++||||+| |.+| ||+++++++++.+.....++
T Consensus 172 ~~~~~l~~~~~~~~~iI~Deay~~f~~~-~~~~~~~~~~~~vi~~~SfSK~~-gl~GlRvGy~v~~~~l~~~l~~~~~~~ 249 (364)
T PRK04781 172 DQIERALQALQGKALVVVDEAYGEFSDV-PSAVGLLARYDNLAVLRTLSKAH-ALAAARIGSLIANAELIAVLRRCQAPY 249 (364)
T ss_pred HHHHHHHHhCCCCcEEEEeCcchhhcCC-cchHHHHhhCCCEEEEecChhhc-ccccceeeeeeCCHHHHHHHHhccCCC
Confidence 666666654 47999999998754321 110111111 247789999999 7666 99999999999988765544
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
..+ .+.+.++..++.+.......+..+++.++++.+.+.|+.. |+.... +++++++|+.++. ..++ ...+.
T Consensus 250 ~~~---~~~~~~a~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~-p~~g~f~~~~~~~---~~~~-~~~l~ 321 (364)
T PRK04781 250 PVP---TPCAALAEQALSAPALAVTARRVAEVRAERERLHAALAQLPGVRRVY-PSQGNFLLVRFDD---AEAA-FQALL 321 (364)
T ss_pred CCC---HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCCeEC-CCCCcEEEEEcCC---HHHH-HHHHH
Confidence 322 3344433333322111244555667888899999999887 553223 4668899998862 3344 44556
Q ss_pred HCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++||.+.++..+. +. .+++|++++..
T Consensus 322 ~~gI~v~~~~~~~--~~---~~~~Ris~~~~ 347 (364)
T PRK04781 322 AAGVVVRDQRAAP--RL---SDALRITLGTP 347 (364)
T ss_pred HCCeEEeeCCCCC--CC---CCeEEEeCCCH
Confidence 6799999875321 11 35799998864
No 266
>KOG2862|consensus
Probab=99.72 E-value=1.2e-15 Score=164.24 Aligned_cols=309 Identities=15% Similarity=0.127 Sum_probs=228.0
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~ 107 (1342)
..+.+++.-+|+.|++|+..... |+. .+....+.+.+.+-++..|... ...+++++|+.|+++++.
T Consensus 19 ~L~gPGPsnl~~~V~~A~~~~~l-----gh~-------sPe~~qIm~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~ 86 (385)
T KOG2862|consen 19 TLLGPGPSNLSGRVQEAMSRPSL-----GHM-------SPEFVQIMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALV 86 (385)
T ss_pred eeecCCCcCCCHHHHHhhcCCcc-----ccC-------CHHHHHHHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHH
Confidence 35788999999999999765442 222 2233466666777888888876 556677799999999999
Q ss_pred HccCCCCEEEEeeccCCccch--hhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC-
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLT--HGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID- 182 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s--~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~- 182 (1342)
.++.|||.|++.. .+.++ .+...++.|+.+++++.+ ......++.+.+.+..++|+++.++.+..+ ...|
T Consensus 87 N~lePgd~vLv~~---~G~wg~ra~D~~~r~ga~V~~v~~~--~G~~~~le~i~~~lsqh~p~~vfv~hgdsSTgV~q~~ 161 (385)
T KOG2862|consen 87 NLLEPGDNVLVVS---TGTWGQRAADCARRYGAEVDVVEAD--IGQAVPLEEITEKLSQHKPKAVFVTHGDSSTGVLQDL 161 (385)
T ss_pred hhcCCCCeEEEEE---echHHHHHHHHHHhhCceeeEEecC--cccCccHHHHHHHHHhcCCceEEEEecCccccccchH
Confidence 9999999999754 23333 355678889988888544 445579999999999999988776553333 4446
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC-----
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF----- 254 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~----- 254 (1342)
++.+.++|++|+++++||.+.+.|.... .++ .+|+.-.+..|++++|+| +.+..++...+.++....
T Consensus 162 ~~~~g~lc~k~~~lllVD~VaSlggt~F-----~mDewgVDvaytgSQKaL~aP~GLsiisfS~ka~~~~~~rK~~~~~~ 236 (385)
T KOG2862|consen 162 LAISGELCHKHEALLLVDTVASLGGTEF-----EMDEWGVDVAYTGSQKALGAPAGLSIISFSDKALEAIRDRKTKPVSF 236 (385)
T ss_pred HHHHHHHhhcCCeEEEEechhhcCCccc-----eehhhcccEEEecchhhcCCCCCcceeecCHHHHHHHhhccCCceEE
Confidence 7788999999999999999988765411 112 279988888999999999 888888766666654321
Q ss_pred -----------------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CC-e
Q psy13354 255 -----------------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KS-H 314 (1342)
Q Consensus 255 -----------------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~-~ 314 (1342)
.....+++.....++.+|+..+.++++++..++++++++++...|++.|++...... .. -
T Consensus 237 yFd~~~~~~~wgc~~e~~~yhhT~pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~fv~~e~~rlpt 316 (385)
T KOG2862|consen 237 YFDILRLGNFWGCDGEPRAYHHTPPVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQLFVVDEELRLPT 316 (385)
T ss_pred EEeHHhhcchhccCCcccccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccceecChhhccCc
Confidence 111245566677788888888888899999999999999999999999988665211 11 2
Q ss_pred EEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 315 IILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 315 ~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
...+.++...+-.+++..++.++++.+..+-.|..+. .+|+++..-
T Consensus 317 vttv~vp~gvDw~dVv~~~~~~~~vei~gglg~~~gK------v~RIGl~gc 362 (385)
T KOG2862|consen 317 VTTVKVPYGVDWKDVVAYAMSHYVVEIGGGLGPTVGK------VFRIGLLGC 362 (385)
T ss_pred ceeeecCCCCCHHHHHHHHHHhcCEEeccccCCCccc------EEEEEEeec
Confidence 3446666666667899999998888888766666554 489986543
No 267
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.72 E-value=1.1e-16 Score=197.70 Aligned_cols=225 Identities=27% Similarity=0.356 Sum_probs=165.0
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||||.+|++++||+..++.++.++......| +||+||+|||||++|+.+.+.......... .
T Consensus 53 ~~~~~~~rp~~f~~iiGqs~~i~~l~~al~~~~~~~-vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~-----~------- 119 (531)
T TIGR02902 53 EPLSEKTRPKSFDEIIGQEEGIKALKAALCGPNPQH-VIIYGPPGVGKTAAARLVLEEAKKNPASPF-----K------- 119 (531)
T ss_pred chHHHhhCcCCHHHeeCcHHHHHHHHHHHhCCCCce-EEEECCCCCCHHHHHHHHHHHhhhccCCCc-----C-------
Confidence 489999999999999999999999998887665554 799999999999999999886542110000 0
Q ss_pred hhhhccCCCccEEEEccCCCcC-HHHH-HHHHHHH----h-----------hcC-----ccCCceEEEeccCccCCHHHH
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRG-INEM-AQLLEQT----I-----------YAP-----INARYKIYVIDEVHMLTHHAF 516 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~-~~~i-~~ii~~~----~-----------~~p-----~~~~~rvviIDE~~~L~~~~~ 516 (1342)
....|+++|++.... ...+ +.++... . ..+ ......+++|||++.|+...+
T Consensus 120 -------~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~~~~q 192 (531)
T TIGR02902 120 -------EGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELHPVQM 192 (531)
T ss_pred -------CCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCCHHHH
Confidence 001244444321100 0000 0000000 0 000 023446999999999999999
Q ss_pred HHHHHhhcCC----------------------------CCcEEEEEEeC-CCCCChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 517 NAMLKTLEEP----------------------------PKYIKFILATT-EPQKIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 517 ~~Ll~~Le~p----------------------------~~~~vlIl~t~-~~~kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
+.|+++||+. +.++.+|++|+ .++.+++++++||..+.|++++.+++..++
T Consensus 193 ~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~I~f~pL~~eei~~Il 272 (531)
T TIGR02902 193 NKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVEIFFRPLLDEEIKEIA 272 (531)
T ss_pred HHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhheeeCCCCCHHHHHHHH
Confidence 9999998752 22456676654 577899999999999999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcC----CCCCHHHHHHHhccC
Q psy13354 568 CYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS----EKITLNSMQEMLSII 624 (1342)
Q Consensus 568 ~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~----~~It~e~V~~~v~~~ 624 (1342)
++.+++.++.+++++++.|+.++. |.|.+.+.++.+..++. ..|+.+||+.++...
T Consensus 273 ~~~a~k~~i~is~~al~~I~~y~~-n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 273 KNAAEKIGINLEKHALELIVKYAS-NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred HHHHHHcCCCcCHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 999999999999999999988776 89999999998775542 249999999988643
No 268
>PRK09257 aromatic amino acid aminotransferase; Provisional
Probab=99.72 E-value=4.2e-16 Score=188.40 Aligned_cols=309 Identities=12% Similarity=0.107 Sum_probs=194.2
Q ss_pred cCceeeeecC----CCC-c--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-Cce--Ee
Q psy13354 27 NNNIELIASE----NYT-S--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AAN--VQ 94 (1342)
Q Consensus 27 ~~~i~l~a~~----n~l-~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~v--i~ 94 (1342)
...+++..+. +.. + +.+.+++.+..... ....|+...+..++++++++++....+. + +.+ ++
T Consensus 26 ~~~i~l~~g~~~~~~~~~p~~~~l~~a~~~~~~~~------~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~i~v~i 99 (396)
T PRK09257 26 PDKVNLGVGVYKDEQGRTPVLRAVKKAEARLLETE------TTKNYLPIEGLAAYRQAVQELLFGADSPALAAGRVATVQ 99 (396)
T ss_pred cCcEecceeeEECCCCCEeccHHHHHHHHHhcccc------cCCCcCCCCCCHHHHHHHHHHhcCCCCcccccCeEEEEe
Confidence 3557777663 222 2 34666655544211 1123555667778999888887655432 2 332 55
Q ss_pred cCCHHHHHHHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--CCCCCCCHHHHHHHHHhcC--Ce
Q psy13354 95 PHSGSQANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--NKKEKIDYKKVEYLAKKNK--PK 168 (1342)
Q Consensus 95 ~~sGs~A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~~~--~~ 168 (1342)
++|+++|+..++.++ ++|||+|++.++.++.+ ...+...|..+ ++++. .+++.+|++.+++.++... ..
T Consensus 100 T~Ga~~al~~~~~~l~~~~pGd~Vlv~~P~y~~~---~~~~~~~g~~~--v~v~~~~~~~~~~d~~~l~~~~~~~~~~~~ 174 (396)
T PRK09257 100 TPGGTGALRVGADFLKRAFPDAKVWVSDPTWPNH---RAIFEAAGLEV--KTYPYYDAATKGLDFDAMLADLSQAPAGDV 174 (396)
T ss_pred cCCccHHHHHHHHHHHHhCCCCeEEECCCCcccH---HHHHHHcCCcE--EEEeccccccCccCHHHHHHHHHhCCCCCE
Confidence 658888999998766 58999999777555544 45556677744 44454 2457899999999887532 35
Q ss_pred EEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC-CCCC-----CCCCcEEEecCCccCCCCCe-
Q psy13354 169 LIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-YPNP-----VPFADFITSTTHKSLRGPRG- 236 (1342)
Q Consensus 169 liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-~~~~-----l~~~Divv~S~sK~l~gp~G- 236 (1342)
++++++++|| +...+++|+++|++||++||+|++|....+..+. .... .....++++||||.+ +++|
T Consensus 175 ~~i~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~Gl 253 (396)
T PRK09257 175 VLLHGCCHNPTGADLTPEQWDELAELLKERGLIPFLDIAYQGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNF-GLYGE 253 (396)
T ss_pred EEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccchHHHHHHHHHHHhcCCcEEEEEEcCCcC-ccccc
Confidence 5665667777 3336899999999999999999998753321110 1110 111247789999999 7777
Q ss_pred --eEEEE---echh----HHHHhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 237 --GFILM---KKKY----KKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 237 --G~iv~---~~~l----~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
||+++ +++. ...+.... ...+++++...+.+++..+... ...++++.++++.++++.+.+.|++.
T Consensus 254 RiG~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~ 332 (396)
T PRK09257 254 RVGALSVVAEDAEEADRVLSQLKATI-RTNYSNPPAHGAAIVATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAK 332 (396)
T ss_pred cceeEEEEeCCHHHHHHHHHHHHHHh-hhhcCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99984 3332 33332221 1222333344444433333211 12356677889999999999999987
Q ss_pred C----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 303 G----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 303 g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +.+ ..+.+++++|+.++ .+++..+++++||.+.+. .|++++..+.
T Consensus 333 ~~~~~~~~-~~p~gg~~~w~~l~-----~~~~~~l~~~~~V~~~p~--------------~ri~~~~~~~ 382 (396)
T PRK09257 333 GPSRDFDF-IARQRGMFSYSGLT-----PEQVDRLREEFGVYAVGS--------------GRINVAGLNE 382 (396)
T ss_pred CCCCCccc-ccccceEEEecCCC-----HHHHHHHHHcCCEEEcCC--------------CeEEEeeCCH
Confidence 4 333 24567889998764 367788888899988641 1898876433
No 269
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=99.72 E-value=1.1e-15 Score=180.22 Aligned_cols=292 Identities=13% Similarity=0.132 Sum_probs=189.4
Q ss_pred cCceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CC-CceEecCCHHH
Q psy13354 27 NNNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AE-AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~-~~vi~~~sGs~ 100 (1342)
.+.+.+..|+|.++++ +++++.+++..... .+|.. .+..++++ .++++++ .+ +.+++++|+++
T Consensus 19 ~~~i~l~~~~~~~~~p~~~~~~~~~~~~~~~~------~~Y~~-~~~~~Lr~----aia~~~~~~~~~~~~i~it~Ga~~ 87 (335)
T PRK14808 19 RDRTYLALNENPFPFPEDLVDEVFRRLNSDTL------RIYYD-SPDEELIE----KILSYLDTDFLSKNNVSVGNGADE 87 (335)
T ss_pred CceeEecCCCCCCCCCHHHHHHHHHHhhhhhh------hcCCC-CChHHHHH----HHHHHhCCCCCCcceEEEcCCHHH
Confidence 3568888888776544 88888776532110 11211 23456666 5666665 33 45556657788
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
++..++.++ |.|++.+ +++......+...|. +++.++.++++.++... +. ..+++++++++||
T Consensus 88 ~i~~~~~~~----d~v~v~~---P~y~~~~~~~~~~g~--~~~~v~~~~~~~~~~~~----~~--~~~~i~i~nP~NPTG 152 (335)
T PRK14808 88 IIYVMMLMF----DRSVFFP---PTYSCYRIFAKAVGA--KFLEVPLTKDLRIPEVN----VG--EGDVVFIPNPNNPTG 152 (335)
T ss_pred HHHHHHHHh----CcEEECC---CCHHHHHHHHHHcCC--eEEEecCCCcCCCChhH----cc--CCCEEEEeCCCCCCC
Confidence 999999887 6788665 444445555667777 55666766667555332 22 3467777777777
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe---eEEEEechhHHHHhhcc
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAV 253 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~ 253 (1342)
...+.+++.+++ +++++||+||+|.... .......... ..++++||||++ |.+| ||+++++++++.+....
T Consensus 153 ~~~s~~~l~~l~-~~~~~ii~DE~Y~~f~--~~~~~~~~~~~~~vi~~~S~SK~~-~l~GlRvG~~v~~~~~~~~l~~~~ 228 (335)
T PRK14808 153 HVFEREEIERIL-KTGAFVALDEAYYEFH--GESYVDLLKKYENLAVIRTFSKAF-SLAAQRIGYVVSSEKFIDAYNRVR 228 (335)
T ss_pred CCcCHHHHHHHH-hcCCEEEEECchhhhc--CCchHHHHHhCCCEEEEEechhhc-cCcccceEEEEeCHHHHHHHHHhc
Confidence 444888888888 5899999999987531 1111111111 247889999999 7677 99999999999887654
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
..+. ...+.+.++..++. .. ++..+..+.+.++++++.+.|.+.|+.+.. +.++++|+.++.. ...++ ...
T Consensus 229 ~~~~---~~~~~q~a~~~~l~-~~-~~~~~~~~~~~~~r~~l~~~L~~~g~~~~~--~~g~f~~~~l~~~-~~~~~-~~~ 299 (335)
T PRK14808 229 LPFN---VSYVSQMFAKVALD-HR-EIFEERTKFIVEERERMKSALREMGYRITD--SRGNFVFIFMEKE-EKERL-LEH 299 (335)
T ss_pred CCCC---CCHHHHHHHHHHHh-CH-HHHHHHHHHHHHHHHHHHHHHHHCCCEECC--CCCeEEEEeCCCc-cHHHH-HHH
Confidence 3332 22445555444443 22 355666778888889999999998887643 4677889988742 23344 445
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.++||.|..+ ..++|++++...+
T Consensus 300 l~~~Gi~V~~~-----------~~~~Risi~~~~~ 323 (335)
T PRK14808 300 LRAKNIAVRSF-----------REGVRITIGKREE 323 (335)
T ss_pred HHHCCeEEEEC-----------CCCeEEecCCHHH
Confidence 55669999853 1359999888644
No 270
>PLN03032 serine decarboxylase; Provisional
Probab=99.71 E-value=4.5e-15 Score=174.72 Aligned_cols=312 Identities=14% Similarity=0.084 Sum_probs=208.4
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-Cce--EecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AAN--VQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~v--i~~~sGs~A~~~ 104 (1342)
..+.+-.+.++-+ .+++++...+.+.+ |+|++. +..+....++|+++++++++++|.+ ..+ ++++|||+||..
T Consensus 25 ~~~gy~~~~~~~~-~~~~~~~~~~~~~~--gnP~s~-~~~g~~a~~~e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~ 100 (374)
T PLN03032 25 VHFGYPYNLDFDY-GELSQLMKYSINNL--GDPFIE-SNYGVHSRQFEVGVLDWFARLWELEKDEYWGYITTCGTEGNLH 100 (374)
T ss_pred hccCCCchhccCh-HHHHHHHHhcccCC--CCCccc-CCCCccHHHHHHHHHHHHHHHhCCCCccCCEEEeCchHHHHHH
Confidence 3455555555433 46777777665443 555542 3334556789999999999999987 332 666699999998
Q ss_pred HHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCC--CC
Q psy13354 105 VFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASA--YS 178 (1342)
Q Consensus 105 al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~--~~ 178 (1342)
++.+.. .++++|+++. ..|.+....+...|..+..+ +.+.+|.+|+++|++.+.+. .|.+++++..+ .+
T Consensus 101 al~~ar~~~~~~~vi~s~---~~H~Sv~kaa~~lg~~~~~V--~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG 175 (374)
T PLN03032 101 GILVGREVFPDGILYASR---ESHYSVFKAARMYRMEAVKV--PTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKG 175 (374)
T ss_pred HHHHHHHhCCCcEEEeCC---CceeHHHHHHHHcCCCCeEe--eeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCc
Confidence 887653 3556777555 45666667777777755544 66788999999999999864 35555554333 33
Q ss_pred cccCHHHHHHHHHHcC-----CEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEechhHHHH
Q psy13354 179 QYIDFERFYHIAKNIN-----SYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKKKYKKII 249 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~g-----i~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l 249 (1342)
...|+++|+++|+++| +|+++|+|++.+..........+ ..+|.++.|+||++++|.| |+++.++...+.+
T Consensus 176 ~idpi~eI~~i~~~~g~~~~~~~lHvDaA~gg~~~p~~~~~~~~~~~~~vDSis~s~HK~~g~P~g~G~ll~r~~~~~~~ 255 (374)
T PLN03032 176 AVDDLDRILRILKELGYTEDRFYIHCDGALFGLMMPFVSRAPEVTFRKPIGSVSVSGHKFLGCPMPCGVALTRKKHVKAL 255 (374)
T ss_pred cCCCHHHHHHHHHHhCCCCCCeeEEEEccchhhhhhccCCCcccCCCcCCcEEEECcccccCCCcCeEEEEEEchhhHhh
Confidence 6669999999999996 59999999987655321111111 2379999999999955999 9999998766554
Q ss_pred hhccCCcc------ccCCc-HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 250 NSAVFPGI------QGGPL-MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 250 ~~~~~~~~------~~~~~-~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
... .++. ..++. .....++++.+.....+++.+..++..++++++.+.|.+.++++...| ..+.+.+..+.
T Consensus 256 ~~~-~~Yl~~~d~ti~gSR~g~~~l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~~~~~~~~p-~~~~V~f~~~~ 333 (374)
T PLN03032 256 SQN-VEYLNSRDATIMGSRNGHAPLYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEAGLTCRLNE-LSSTVVFERPM 333 (374)
T ss_pred ccC-CcccCCCCCcccCCCchHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCCCcEEECC-CceEEEEcCCC
Confidence 321 1111 22222 234556677777777778999999999999999999999998876644 34444444332
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.. +.+ |..+.+. ...+|+++.+..+.+
T Consensus 334 ---~~~-----~~~-~w~l~~~-----------~~~~hi~vm~~~~~~ 361 (374)
T PLN03032 334 ---DEA-----FIK-KWQLACE-----------GDIAHVVVMPNVTVE 361 (374)
T ss_pred ---cHh-----Hhh-eeeeccc-----------CCEEEEEECCCCCHH
Confidence 111 222 4444321 125899888876643
No 271
>PTZ00376 aspartate aminotransferase; Provisional
Probab=99.71 E-value=4.7e-16 Score=188.33 Aligned_cols=302 Identities=14% Similarity=0.070 Sum_probs=189.4
Q ss_pred cCceeeeecC--CCCcH-HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceE--ecCCH
Q psy13354 27 NNNIELIASE--NYTSL-AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANV--QPHSG 98 (1342)
Q Consensus 27 ~~~i~l~a~~--n~l~~-~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi--~~~sG 98 (1342)
.+.+++..+. ++.++ .+.+++.+++.... . ......|+...+..++++++++++....+. + +.++ .+.+|
T Consensus 29 ~~~i~l~~g~~~~~~~~~~~~~~~~~a~~~~~-~-~~~~~~Y~~~~G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~ 106 (404)
T PTZ00376 29 PSKVNLGIGAYRDENGKPYVLESVRKAEKIIA-E-KNLDKEYLPIEGLQSFIEAAQKLLFGEASYALAEKRIATVQALSG 106 (404)
T ss_pred cccEecccceeECCCCCEehhhHHHHHHHHhc-c-ccCCCCCCCCCCCHHHHHHHHHHhcCCCccccccCeEEEeeccCc
Confidence 3557777765 23333 25556555543211 1 111234666777889999888877554321 2 3333 24477
Q ss_pred HHHHHHHHH---HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--CCCCCCCHHHHHHHHHhc--CCeEEE
Q psy13354 99 SQANQAVFF---SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--NKKEKIDYKKVEYLAKKN--KPKLII 171 (1342)
Q Consensus 99 s~A~~~al~---al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~~--~~~liv 171 (1342)
++|+..++. ++++|||+|++.++.|+.+ ...+...|. ++++++. ++++.+|++.+++.++.. +.++++
T Consensus 107 ~~al~~~~~~l~~~~~~Gd~Vlv~~P~y~~~---~~~~~~~G~--~~~~v~l~~~~~~~~d~~~l~~~~~~~~~~~~~~~ 181 (404)
T PTZ00376 107 TGALRLGFEFLKRFLPAGTTVYVSNPTWPNH---VNIFKSAGL--NVKEYRYYDPKTKGLDFDGMLEDLRTAPNGSVVLL 181 (404)
T ss_pred chHHHHHHHHHHHhcCCCCEEEEcCCCchhH---HHHHHHcCC--ceeeccccCcccCCcCHHHHHHHHHhCCCCCEEEE
Confidence 778777764 6689999999777555544 445567777 4555555 245789999999988643 346676
Q ss_pred EcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCC--CC-CC--CcEEEecCCccCCCCCe---
Q psy13354 172 AGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPN--PV-PF--ADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 172 ~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~--~l-~~--~Divv~S~sK~l~gp~G--- 236 (1342)
+++++|| +...+++|+++|++||++||+||+|....+... .+.. .+ .. ..++++||||.+ +++|
T Consensus 182 ~~~p~NPTG~~~s~~~~~~l~~~a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~-~~~GlRv 260 (404)
T PTZ00376 182 HACAHNPTGVDPTEEQWKEIADVMKRKNLIPFFDMAYQGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNM-GLYGERI 260 (404)
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEehhhcCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCcc-ccccccc
Confidence 6777777 333789999999999999999999865433210 0000 00 11 247889999999 7777
Q ss_pred eEE---EEechhHHHH----hhccCCccccCCcHHHHHHHHHHHHHh--cc---chHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 237 GFI---LMKKKYKKII----NSAVFPGIQGGPLMHVIAAKAVAFKEV--LK---PDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 237 G~i---v~~~~l~~~l----~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~---~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
||+ ++++++.+.+ ... .....++++...+.++..++.+. .+ ...++.++++.++++.+.+.|.+.++
T Consensus 261 G~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~ 339 (404)
T PTZ00376 261 GALHIVCANKEEAANVLSQLKLI-IRPMYSSPPIHGARIADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALGS 339 (404)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHH-HhhhcCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 998 4676654433 221 11222333334444444444221 01 12445567889999999999998753
Q ss_pred ----EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 305 ----RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 305 ----~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
.+. .+.+++++|+.++ .+++..|++++||.+.|
T Consensus 340 ~~~~~~~-~p~gg~f~~~~~~-----~~~~~~L~~~~~v~v~p 376 (404)
T PTZ00376 340 PGDWEHI-INQIGMFSFTGLT-----KEQVERLIEKYHIYLLD 376 (404)
T ss_pred CCccccc-ccCceEEEecCCC-----HHHHHHHHHhCCEeecC
Confidence 222 3567889998763 57888999988999864
No 272
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=99.71 E-value=1.1e-15 Score=186.07 Aligned_cols=327 Identities=11% Similarity=0.015 Sum_probs=193.4
Q ss_pred cCceeeeecCCC-CcH---HHHHHHhHHHHhccccCC-CCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCH
Q psy13354 27 NNNIELIASENY-TSL---AVMEAQGTLLTNKYAEGY-PGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSG 98 (1342)
Q Consensus 27 ~~~i~l~a~~n~-l~~---~v~eal~~~l~~~~~~g~-~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sG 98 (1342)
.+.+.|..+... .++ .+.+++...+... .+ ..-..|+...+..++++++++++...+|.. +.+++++|+
T Consensus 30 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~v~~~~I~it~Ga 106 (416)
T PRK09440 30 PGAIMLGGGNPAHIPEMEDYFRDLLADLLASG---KLTEALGNYDGPQGKDELIEALAALLNERYGWNISPQNIALTNGS 106 (416)
T ss_pred CCceeccCCCCCccCCHHHHHHHHHHHHhcCc---ccccccccCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEEccCh
Confidence 345777766533 221 2455544443211 01 111235555667789998888888776743 455566577
Q ss_pred HHHHHHHHHHccC-----CCCEEEE-eeccCCccchhhHHhh-hCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEE
Q psy13354 99 SQANQAVFFSVLN-----PGDTIMG-MSLQEGGHLTHGMMLN-MSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLI 170 (1342)
Q Consensus 99 s~A~~~al~al~~-----pGD~Vlv-~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~li 170 (1342)
++|+..++.++++ +||.|++ ..+.++++........ ..+.+..+++++.+. .+.+|++.++ +. .+++++
T Consensus 107 ~~al~~~~~~l~~~~~~~~gd~v~i~~~P~y~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~-~~~~~i 183 (416)
T PRK09440 107 QSAFFYLFNLFAGRRADGSLKKILFPLAPEYIGYADAGLEEDLFVSYRPNIELLPEGQFKYHVDFEHLH--ID-EDTGAI 183 (416)
T ss_pred HHHHHHHHHHHhccccCCCCCeEEEecCCCchhhHHHhhccCceeecccccccccccccccCCCHHHcc--cC-CCceEE
Confidence 8899999999984 6899998 5777766543221111 111222233332211 3568999887 23 355677
Q ss_pred EEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC---CCCCcEEEecCCccCCCCCe---eEE
Q psy13354 171 IAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPFADFITSTTHKSLRGPRG---GFI 239 (1342)
Q Consensus 171 v~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~~Divv~S~sK~l~gp~G---G~i 239 (1342)
++++++|| +...+++|+++|++||++||+||+|..... ...+... ....-++++||||+ +.+| ||+
T Consensus 184 ~l~~P~NPTG~~~s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~-~~~~~~~~~~~~~~vI~~~SfSK~--~~pGlRiG~~ 260 (416)
T PRK09440 184 CVSRPTNPTGNVLTDEELEKLDALARQHNIPLLIDNAYGPPFP-GIIFSEATPLWNPNIILCMSLSKL--GLPGVRCGIV 260 (416)
T ss_pred EEecCCCCCCccCCHHHHHHHHHHHHHcCCcEEEeCCccccCC-CcchhhcCccccCCeEEEeccccc--CCCcceEEEE
Confidence 77777777 223589999999999999999999963211 0000111 01124778999995 4556 999
Q ss_pred EEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHH-HHHHHHHHHHHHHHHHHhC----CcEEeeCCCCC
Q psy13354 240 LMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKI-YQKQVVKNAKILSKILDQR----GIRIVSGGTKS 313 (1342)
Q Consensus 240 v~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~-~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~ 313 (1342)
++++++++.+......+..+ ++...+.++..++.+.. ..+..+ .+..+.++++.+.+.|.+. ++.+ ..+.++
T Consensus 261 i~~~~l~~~~~~~~~~~~~~-~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~l~~~~~~~-~~p~gg 338 (416)
T PRK09440 261 IADEEIIEALSNMNGIISLA-PGRLGPAIAAEMIESGDLLRLSETVIRPFYRQKVQLAIALLRRYLPDEPCLI-HKPEGA 338 (416)
T ss_pred eCCHHHHHHHHHHHHHhccC-CCcHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCeEE-ecCCCc
Confidence 99999988887644333332 33445555544443211 112222 3555666777777777652 3443 245678
Q ss_pred eEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCc---cccccccccccc
Q psy13354 314 HIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKP---YFTSGIRLGSSA 365 (1342)
Q Consensus 314 ~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~---~~~~~lRi~~~~ 365 (1342)
+++|+.++.. ..+.++... +.++||.+.++..+...... ...+++|++++.
T Consensus 339 ~fiw~~~~~~~~~~~~~~~~-l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~ 393 (416)
T PRK09440 339 IFLWLWFKDLPITTEELYQR-LKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ 393 (416)
T ss_pred eEEEEECCCCCCCHHHHHHH-HHHCCEEEechHhhCCCCccccCCcCceEEEEecC
Confidence 9999999863 334455554 56679999987654321100 012479999974
No 273
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=99.71 E-value=1.1e-15 Score=180.15 Aligned_cols=291 Identities=12% Similarity=0.105 Sum_probs=187.6
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
+.+.+..++|..++++.+...+.+. . |.... ..++++ ++++++|.+ +.+++++|+++++..+.
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~-~----------y~~~~-~~~lr~----~la~~~~~~~~~i~~t~G~~~~i~~~~ 81 (330)
T TIGR01140 18 DWLDFSTGINPLGPPVPPIPASAWA-R----------YPDPE-YDELRA----AAAAYYGLPAASVLPVNGAQEAIYLLP 81 (330)
T ss_pred heeEccccCCCCCCChhhcchHHHh-h----------CCCcc-HHHHHH----HHHHHhCCChhhEEECCCHHHHHHHHH
Confidence 4577888888877664443222221 1 11112 245555 888888876 56667756777877765
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC--
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID-- 182 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~-- 182 (1342)
.+ +.+| .|++..+ ++..+...+...|. ++++++ |++.+++.+.+ ...+++. .++|| ...+
T Consensus 82 ~~-l~~g-~vl~~~p---~y~~~~~~~~~~g~--~~~~~~-------d~~~l~~~~~~-~~~v~i~-~p~NPtG~~~~~~ 145 (330)
T TIGR01140 82 RL-LAPG-RVLVLAP---TYSEYARAWRAAGH--EVVELP-------DLDRLPAALEE-LDVLVLC-NPNNPTGRLIPPE 145 (330)
T ss_pred HH-hCCC-eEEEeCC---CcHHHHHHHHHcCC--EEEEeC-------CHHHHHhhccc-CCEEEEe-CCCCCCCCCCCHH
Confidence 55 5777 5776554 44444555566776 444444 78889888743 3344444 44555 2224
Q ss_pred -HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--CCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 183 -FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--PFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 183 -l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
+++|+++|+++|++||+|++|....... ...... ...+++++|+||++ |++| ||+++++++++.+......+
T Consensus 146 ~~~~l~~~a~~~~~~ii~De~y~~~~~~~-~~~~~~~~~~~~i~~~S~SK~~-g~~G~R~G~i~~~~~~~~~l~~~~~~~ 223 (330)
T TIGR01140 146 TLLALAARLRARGGWLVVDEAFIDFTPDA-SLAPQAARFPGLVVLRSLTKFF-GLAGLRLGFVVAHPALLARLREALGPW 223 (330)
T ss_pred HHHHHHHHhHhcCCEEEEECcccccCCcc-chhhHhccCCCEEEEEecchhh-cCchhhhhheeCCHHHHHHHHhcCCCC
Confidence 7888999999999999999986443211 111111 12358899999999 6666 99999999988887754333
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
. .+.+.+.++...+ +.. .+.+..++++.++++++.+.|++.+ +.+ .+..++++|+.+++ +.++++.+++
T Consensus 224 ~---~s~~~q~~~~~~l-~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~f~~~~~~~---~~~l~~~l~~ 293 (330)
T TIGR01140 224 T---VNGPARAAGRAAL-ADT-AWQAATRARLAAERARLAALLARLGGLEV--VGGTALFLLVRTPD---AAALHEALAR 293 (330)
T ss_pred C---chHHHHHHHHHHH-hch-HHHHHHHHHHHHHHHHHHHHHHhCCCceE--CCCCCeEEEEEcCC---HHHHHHHHHH
Confidence 2 2234444443333 322 2556778999999999999999987 544 23567889998764 3567777765
Q ss_pred HCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+||.+.++..+.... .+++|++++..+
T Consensus 294 -~gi~v~pg~~f~~~~----~~~iRi~~~~~~ 320 (330)
T TIGR01140 294 -RGILIRDFDNFPGLD----PRYLRFALPTDE 320 (330)
T ss_pred -CCEEEEECCCCCCCC----CCEEEEEecCHH
Confidence 599999987663211 357999987644
No 274
>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase. This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).
Probab=99.71 E-value=5e-15 Score=176.62 Aligned_cols=287 Identities=15% Similarity=0.138 Sum_probs=181.7
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~ 115 (1342)
..++...++++.+.+...+ +++..+...++++ ++++++|.+++++++ ||++|+..++.++ ++|||+
T Consensus 7 p~~~~~e~~a~~~~~~~~~--------~~~~g~~~~~~e~----~la~~~g~~~~v~~~-sgt~aL~~~l~al~~~pGd~ 73 (376)
T TIGR02379 7 PPVTGQELEYIAEAISEGK--------LSGDGPFSRRCET----WLENRTGTKKALLTP-SCTAALEMAALLLDIQPGDE 73 (376)
T ss_pred CCCCHHHHHHHHHHHHcCC--------ccCCcHHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHcCCCCcCE
Confidence 3456667777777764321 1112333344444 888899998876666 9999999999988 899999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNIN 194 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~g 194 (1342)
|+++++.++ +...++...|. +++.++.++ ++.+|++++++++++ ++++|+.++ .++...++++|.++|++||
T Consensus 74 Viv~~~t~~---~~~~~~~~~G~--~~v~vd~d~~~~~~d~~~le~~i~~-~tk~Iip~~-~~G~~~d~~~I~~la~~~~ 146 (376)
T TIGR02379 74 VIMPSYTFV---STANAFVLRGA--KIVFVDIRPDTMNIDETLIESAITH-RTKAIVPVH-YAGVACDMDTIMALANKHQ 146 (376)
T ss_pred EEECCCCcH---HHHHHHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEEEeC-CCCCccCHHHHHHHHHHCC
Confidence 998775554 34444556676 555556663 478999999998876 445555432 2345669999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCC-CCCeeEEEEe-chhHHHHhhccCCc--------------
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLR-GPRGGFILMK-KKYKKIINSAVFPG-------------- 256 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~-gp~GG~iv~~-~~l~~~l~~~~~~~-------------- 256 (1342)
++||+|++|+.|....+...+.+ .|+.++||+ |.+. |+.||+++++ +++.+.++.....+
T Consensus 147 i~vIeDaa~~~g~~~~~~~~g~~--~~~~~fSf~~~K~l~~g~~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 224 (376)
T TIGR02379 147 LFVIEDAAQGVMSTYKGRALGSI--GHLGTFSFHETKNYTSGGEGGALLINDQAFIERAEIIREKGTNRSQFFRGEVDKY 224 (376)
T ss_pred CEEEEECccccCCccCCcccCCC--CCEEEEeCCCCCcCcccCCceEEEECCHHHHHHHHHHHHhCCCCccccccCCCcc
Confidence 99999999998864444433333 377777776 5553 4578988877 56766665432111
Q ss_pred -----cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC----cEEeeCCCC----CeEEEEEccCC
Q psy13354 257 -----IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG----IRIVSGGTK----SHIILVDLRNK 323 (1342)
Q Consensus 257 -----~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g----~~~~~~~~~----~~~v~i~~~~~ 323 (1342)
.++.-++..++|...+.++ .+++..++.+++++++.+.|.+.. ..+...+.+ .+++++.++..
T Consensus 225 ~~~~~g~n~~~~~~~Aa~g~~qL~----~l~~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 300 (376)
T TIGR02379 225 TWRDIGSSYLPSELQAAYLWAQLE----QADRINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIKLKDE 300 (376)
T ss_pred eeeeecccCCccHHHHHHHHHHHH----HhHHHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEEECCc
Confidence 1112223344444444333 344566677777788888886632 222111111 13455666543
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCC
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDP 350 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~ 350 (1342)
.+.+.+...|+++||.+...+.|...
T Consensus 301 -~~r~~l~~~L~~~gI~~~~~~~p~~~ 326 (376)
T TIGR02379 301 -DDRNELIKYLKEQEIMAVFHYVPLHS 326 (376)
T ss_pred -CCHHHHHHHHHHCCCCccccCcCCCc
Confidence 34566666677779998876655543
No 275
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=99.71 E-value=1.4e-15 Score=179.74 Aligned_cols=290 Identities=13% Similarity=0.093 Sum_probs=186.4
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.|..+++.++ +.+++++.+++....... |. ..+..++++ .+++++|.+ +.+++++|+++++..
T Consensus 19 ~~i~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~------Y~-~~g~~~lr~----~ia~~~~~~~~~I~~t~G~~~~l~~ 87 (337)
T PRK03967 19 YRIWLDKNENPFDLPEELKEEIFEELKRVPFNR------YP-HITSDPLRE----AIAEFYGLDAENIAVGNGSDELISY 87 (337)
T ss_pred ceEEecCCCCCCCCCHHHHHHHHHHhhcCcccc------CC-CCCHHHHHH----HHHHHhCcCcceEEEcCCHHHHHHH
Confidence 4477777776643 458888777763211111 22 224456666 777777766 455566578889888
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++ +||+|++..+.++. +.......|. .+++++.++++.+|++.+++.+. +.+++++++++|| ...+
T Consensus 88 ~~~~~--~gd~V~v~~P~y~~---~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~~~--~~~~v~~~~P~NPtG~~~~ 158 (337)
T PRK03967 88 LVKLF--EGKHIVITPPTFGM---YSFYAKLNGI--PVIDVPLKEDFTIDGERIAEKAK--NASAVFICSPNNPTGNLQP 158 (337)
T ss_pred HHHHh--CCCeEEEeCCChHH---HHHHHHHcCC--eEEEeecCCCCCcCHHHHHHhcc--CCCEEEEeCCCCCCCCCCC
Confidence 87766 79999987755543 3334456676 55555666678899999988653 3445555566666 4448
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCcc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
.++|.++|+ ++++||+||+|.... ...+..... ...++++||||.| |.+| ||+++++++++.+......+
T Consensus 159 ~~~l~~i~~-~~~~ii~De~y~~~~--~~~~~~~~~~~~~vi~l~S~SK~~-~l~GlRiG~iv~~~~~i~~~~~~~~~~- 233 (337)
T PRK03967 159 EEEILKVLE-TGKPVVLDEAYAEFS--GKSLIGLIDEYPNLILLRTFSKAF-GLAGIRAGYAIANEEIIDALYRIKPPF- 233 (337)
T ss_pred HHHHHHHHh-cCCEEEEECchhhhc--ccchHHHHhhCCCEEEEecchHhh-cchhhhheeeecCHHHHHHHHhhcCCC-
Confidence 899999995 799999999987432 111111111 1247789999999 7666 99999999988887754433
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHC
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~ 337 (1342)
+.+.+.+.++..++ +.. +++.+....+.++++.+.+.|.+.. .+.+++++|+.++ +...+++ +
T Consensus 234 --~~~~~~q~~~~~~l-~~~-~~~~~~~~~~~~~r~~l~~~L~~~~-----~~~~~~~~~~~~~-------~~~~l~~-~ 296 (337)
T PRK03967 234 --SLNILTMKIVRLAL-DHY-DLIEERIDYIIKERERVRRELGEYA-----YPSDANFLLLKLD-------AYDYLLE-N 296 (337)
T ss_pred --CCCHHHHHHHHHHH-hCH-HHHHHHHHHHHHHHHHHHHHhccCc-----CCCCCcEEEEhHH-------HHHHHHH-C
Confidence 22344555544443 322 2455556666777888888887642 2456788898763 4555554 5
Q ss_pred CceeeeccCCCCCCCcccccccccccccc
Q psy13354 338 NIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 338 GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
||.+.+.. .. ..+++|++++..
T Consensus 297 gi~v~~~~--~~-----~~~~~Ri~~~~~ 318 (337)
T PRK03967 297 GIVVRKLS--GR-----LEGHIRVTVGKR 318 (337)
T ss_pred CEEEEeCC--CC-----CCCeEEEecCCH
Confidence 99998642 11 135799998864
No 276
>PLN02397 aspartate transaminase
Probab=99.71 E-value=5.3e-16 Score=188.44 Aligned_cols=266 Identities=14% Similarity=0.132 Sum_probs=171.7
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCCC---Cce----EecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhC
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNAE---AAN----VQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMS 136 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~~---~~v----i~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~ 136 (1342)
.|+...+..+|++++++++....+.. +.+ ++.++|+.++...+.+++.|||+|+++++.|+.+ ...+...
T Consensus 86 ~Y~~~~G~~~LR~aia~~~~~~~~~~~~~~~i~~~~i~~g~Ga~~l~~~~~~~~~pGd~Vlv~~P~y~~y---~~~~~~~ 162 (423)
T PLN02397 86 EYLPIEGLAEFNKLSAKLAYGADSPAIKENRVATVQCLSGTGSLRLGAEFLARFYPGSTIYIPNPTWGNH---HNIFRDA 162 (423)
T ss_pred CCCCcCCCHHHHHHHHHHHcCCCCchhhcCeeEeeecccchHHHHHHHHHHHHhCCCCEEEEeCCCchhH---HHHHHHc
Confidence 46777788899997777775443221 111 2333455556666666677999999777555544 4555666
Q ss_pred CceeEEEEecC--CCCCCCCHHHHHHHHHh--cCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhh
Q psy13354 137 GKWFNSICYGL--NKKEKIDYKKVEYLAKK--NKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGL 207 (1342)
Q Consensus 137 g~~~~~v~~~~--~~~~~id~e~Le~~i~~--~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~ 207 (1342)
|. ++++++. .+++.+|++.+++.+.. .+.+++++++++|| +...+++|+++|++||++||+||+|....
T Consensus 163 g~--~~~~v~l~~~~~~~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~s~e~l~~i~~~a~~~~~~vI~De~Y~~l~ 240 (423)
T PLN02397 163 GV--PVRTYRYYDPKTRGLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDPTPEQWEQISDLIKSKNHLPFFDSAYQGFA 240 (423)
T ss_pred CC--eEEEeecccCcCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEecccCCcc
Confidence 77 4444454 23578999999888764 23466666666666 33378899999999999999999997654
Q ss_pred hhcC--CCCCC--CC---CCcEEEecCCccCCCCCe---eEEE--E-echhHHH----HhhccCCccccCCcHHHHHHHH
Q psy13354 208 IAAG--EYPNP--VP---FADFITSTTHKSLRGPRG---GFIL--M-KKKYKKI----INSAVFPGIQGGPLMHVIAAKA 270 (1342)
Q Consensus 208 ~~~~--~~~~~--l~---~~Divv~S~sK~l~gp~G---G~iv--~-~~~l~~~----l~~~~~~~~~~~~~~~~~~Aaa 270 (1342)
+... .+... +. ..-++++||||++ +++| ||++ . ++++++. +...... ...+++.+.+.+++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~-~~~G~RvG~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~q~~~~ 318 (423)
T PLN02397 241 SGDLDADAQSVRMFVEDGHEILVAQSYAKNM-GLYGERVGALSVVCKSADVAVRVKSQLKLIARP-MYSNPPIHGASIVA 318 (423)
T ss_pred CCchhhhhHHHHHHHhcCCcEEEEEECcccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhc-ccCCCcHHHHHHHH
Confidence 4210 11111 10 1247789999999 7777 9985 3 4444433 3222112 22233344444444
Q ss_pred HHHHHh--cc---chHHHHHHHHHHHHHHHHHHHHhCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 271 VAFKEV--LK---PDFKIYQKQVVKNAKILSKILDQRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 271 ~al~~~--l~---~~~~~~~~~l~~~a~~l~~~L~~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
.++... .. ++++..++.+.++++.+.+.|++.| +.+. .+.+++++|++++ .+++..|++++||.+
T Consensus 319 ~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~~~~~~~~-~p~gg~fl~~~l~-----~~~~~~Ll~~~~V~v 392 (423)
T PLN02397 319 TILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGSPGDWSHI-TKQIGMFSFTGLN-----KEQVDRMTKEYHIYM 392 (423)
T ss_pred HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcc-cCCceEEEecCCC-----HHHHHHHHHhCCEEE
Confidence 333221 11 1256778899999999999999887 5543 3678899999874 468999999999999
Q ss_pred e
Q psy13354 342 N 342 (1342)
Q Consensus 342 ~ 342 (1342)
.
T Consensus 393 ~ 393 (423)
T PLN02397 393 T 393 (423)
T ss_pred C
Confidence 6
No 277
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=99.70 E-value=1.6e-15 Score=178.58 Aligned_cols=281 Identities=13% Similarity=0.078 Sum_probs=174.0
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~ 107 (1342)
+.+.+..|+|+.+++... +.....+.| +. ....| ++.+++++|.+.+++++ |+++|+..++.
T Consensus 21 ~~i~l~~ne~p~~~~~~~-~~~~~~~~y----p~--------~~~~L----r~~ia~~~~~~~I~it~-Gs~~al~~~~~ 82 (330)
T PRK05664 21 DWLDLSTGIAPWPWPVPA-IPADAWARL----PE--------TDDGL----EAAARAYYGAPQLLPVA-GSQAAIQALPR 82 (330)
T ss_pred HheeecCCcCCCCCCCcc-cCHHHHHhC----CC--------ChHHH----HHHHHHHhCCCCEEECc-CHHHHHHHHHH
Confidence 458888888886554111 111111233 21 01244 44888889987554444 78888887753
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccC
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYID 182 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~ 182 (1342)
+.|||+|++.++.+ .......+..|. +++.++.+ ++++.+. +.+++++++|+|| ...+
T Consensus 83 --~~~gd~v~v~~P~y---~~~~~~~~~~g~--~~~~v~~~--------~~~~~~~--~~~~v~l~nP~NPTG~~~s~~~ 145 (330)
T PRK05664 83 --LRAPGRVGVLSPCY---AEHAHAWRRAGH--QVRELDEA--------EVEAALD--SLDVLVVVNPNNPTGRRFDPAR 145 (330)
T ss_pred --ccCCCEEEEcCCCh---HHHHHHHHHcCC--eEEEechh--------hHhhhhc--CCCEEEEeCCcCCCCCccCHHH
Confidence 57999999766444 444555567777 44544432 3445553 3345555555666 2225
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
+++|+++|+++|++||+||+|..+.- .......... .-++++||||.+ |.+| ||+++++++++.+......+..
T Consensus 146 l~~l~~~~~~~~~~iI~DE~y~~~~~-~~s~~~~~~~~~vi~~~SfSK~~-gl~GlRiG~~v~~~~l~~~~~~~~~~~~~ 223 (330)
T PRK05664 146 LLAWHARLAARGGWLVVDEAFMDNTP-QHSLAACAHRPGLIVLRSFGKFF-GLAGARLGFVLAEPALLRALAELLGPWTV 223 (330)
T ss_pred HHHHHHHHHhcCCEEEEECCcccCCC-cccccccccCCCEEEEeeccccc-cCCCcceEEEEeCHHHHHHHHHhcCCCCC
Confidence 78888888999999999999854321 0111111111 137899999999 7677 9999999999888775443332
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
+ .+.+.++..++.+ . .+.+..++.+.++++++.+.|++.|++. .+...+++|+..+ .+.++... +.++|
T Consensus 224 ~---~~~~~~~~~~L~~-~-~~~~~~~~~~~~~r~~l~~~L~~~~~~~--~~~~~~f~~~~~~---~~~~~~~~-l~~~g 292 (330)
T PRK05664 224 S---GPTRWLAQAALAD-T-PWQRRQRERLLAASQRLAALLRRHGLTP--AGGCALFQWVRTE---DAAALHEF-LARRG 292 (330)
T ss_pred C---HHHHHHHHHHHhC-h-HHHHHHHHHHHHHHHHHHHHHHHCCCcc--cCCcceEEEEecC---CHHHHHHH-HHHCC
Confidence 2 3344444444432 2 3556678888999999999999988653 2233467787764 23455544 55669
Q ss_pred ceeeeccCCCCCCCccccccccccccc
Q psy13354 339 IICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 339 I~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
|.+..+ .. .+++|++++.
T Consensus 293 i~v~~f---~~------~~~iRis~~~ 310 (330)
T PRK05664 293 ILTRLF---EQ------PASLRFGLPA 310 (330)
T ss_pred eEEEEC---CC------CCeEEEECCC
Confidence 999753 11 2479999885
No 278
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=99.70 E-value=8.5e-15 Score=176.10 Aligned_cols=320 Identities=13% Similarity=0.110 Sum_probs=205.1
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEe--cCCHHHHHHHHHHHcc
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQ--PHSGSQANQAVFFSVL 110 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~--~~sGs~A~~~al~al~ 110 (1342)
..++.|.+.+++...+...+ +++.+ . +...++++.+++++++++|.+ +.+.+ ++|||+|++.++.+..
T Consensus 50 tt~~~p~~~~~~~~~l~~~~--~np~s----~-~~~~~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar 122 (431)
T TIGR01788 50 TTWMEPEARKLMDETINKNM--IDKDE----Y-PQTAEIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMK 122 (431)
T ss_pred CCCCCHHHHHHHHHHHhcCC--CCccc----C-ccHHHHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHH
Confidence 34566678888887774322 23322 1 223389999999999999987 23433 5699999999886542
Q ss_pred --------CCC-----CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC-CCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 111 --------NPG-----DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 111 --------~pG-----D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~-~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
..| -.|+++.. .|.+........|..+.. ++.+++ +.+|+++|++++.+.+..+++...++
T Consensus 123 ~~~~~~~~~~g~~~~~~~ii~s~~---~H~sv~ka~~~lg~~v~~--i~~d~~~~~vd~~~L~~~i~~~t~lV~~t~g~t 197 (431)
T TIGR01788 123 WRWRKRMEAAGKPTDKPNLVMGSN---VQVCWEKFARYFDVELRE--VPMDPGRYVIDPEQVVEAVDENTIGVVCILGTT 197 (431)
T ss_pred HHHHHHHHhcCCCCCCcEEEEcCc---chHHHHHHHHHcCceeEE--EecCCCceeeCHHHHHHHHhhCCeEEEEEeCCC
Confidence 111 25775554 455556666666764444 465654 68999999999987544333333344
Q ss_pred CC-cccCHHHHHHHHHHc------CCEEEEEcccchhhhh--cCCCCCC--CCCCcEEEecCCccCCCCCe-eEEEEech
Q psy13354 177 YS-QYIDFERFYHIAKNI------NSYFMVDMAHYAGLIA--AGEYPNP--VPFADFITSTTHKSLRGPRG-GFILMKKK 244 (1342)
Q Consensus 177 ~~-~~~~l~~I~~la~~~------gi~LIvDea~~~g~~~--~~~~~~~--l~~~Divv~S~sK~l~gp~G-G~iv~~~~ 244 (1342)
.. ...|+++|+++|+++ |+|+++|++|+.+... .+..... ...+|.++.|.|||+.||.| |+++.++.
T Consensus 198 ~tG~idpi~~I~~i~~~~~~~~~~~~~~HvDaaq~g~~~p~~~~~~~~~~~~~~~DSis~s~HK~~~~P~g~G~l~~r~~ 277 (431)
T TIGR01788 198 YTGEYEDVKALNDALDEYNAKTGWDIPIHVDAASGGFIAPFVYPDLEWDFRLPRVKSINVSGHKYGLVYPGVGWVIWRDE 277 (431)
T ss_pred CCcccCCHHHHHHHHHHHHhhhCCCceEEEecccHHHHHHHhCCCchhhcCCCCceEEEECchhccCCCCCcEEEEEeCh
Confidence 44 666999999999999 9999999999855431 1111111 23479999999999889999 99998764
Q ss_pred --hHHHHhhc---cC----CccccCCcH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCC
Q psy13354 245 --YKKIINSA---VF----PGIQGGPLM-HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKS 313 (1342)
Q Consensus 245 --l~~~l~~~---~~----~~~~~~~~~-~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~ 313 (1342)
+.+.+... .. .....++.. ....+.+..+..+...+++++.++..++++++.+.|.+.+ |+++.+++..
T Consensus 278 ~~l~~~~~~~~~yl~~~~~~~t~~~sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~~~el~~~~~~~ 357 (431)
T TIGR01788 278 EALPEELIFHVNYLGGDEPTFTLNFSRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLGPFEIISDGSGI 357 (431)
T ss_pred HHcchhheecccccCCCCCCcceecCchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEeeCCCCc
Confidence 22322110 00 001111111 1233445555555556888999999999999999999874 8887642456
Q ss_pred eEEEEEccCC----CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccccc
Q psy13354 314 HIILVDLRNK----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGF 371 (1342)
Q Consensus 314 ~~v~i~~~~~----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~ 371 (1342)
+++.+.+.+. ....++.+ .|.+.|+.+.....|..-.+ .-.+|+++.+..+++.
T Consensus 358 ~iV~Fr~~~~~~~~~~~~~l~~-~L~~~G~~~~~~~~p~~~~~---~~~lR~~~~~~~~~~~ 415 (431)
T TIGR01788 358 PLVAFKLKDDADPGYTLYDLSH-RLRERGWIVPAYTLPKNAED---IVVMRIVVREGFSRDL 415 (431)
T ss_pred eEEEEEeCCCCCCCcCHHHHHH-HHHHCCCcccCCCCCCccCC---eEEEEEEecCCCCHHH
Confidence 7777777642 22234444 44556988765544443322 2358999877777653
No 279
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=99.70 E-value=6.2e-15 Score=181.36 Aligned_cols=314 Identities=13% Similarity=0.094 Sum_probs=197.3
Q ss_pred cCCCCcHHHHHHHhHHHHhccccCCCCCCcc---CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH----
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEGYPGKRYY---GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF---- 107 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~---~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~---- 107 (1342)
..+..+|.+.+++.+.- .+. ++. .| ....+..++..++++++++++|.+.+.++.++|+.+....+.
T Consensus 78 ~~~~~~p~i~~~~~~~~--~~~-~~t---pYq~e~~sqG~lel~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~ 151 (481)
T PRK04366 78 CTMKYNPKINEKVARLP--GFA-ELH---PLQPEETVQGALELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRA 151 (481)
T ss_pred cCCCCCHHHHHHHHhCc--chh-cCC---CCCChhhhhHHHHHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHH
Confidence 34566777888777652 111 221 12 235566788888999999999998777777677765554332
Q ss_pred HccCCCC----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcc--c
Q psy13354 108 SVLNPGD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY--I 181 (1342)
Q Consensus 108 al~~pGD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~--~ 181 (1342)
.+..+|| +|+++...|+.+.. .+...|. +++.++.+++|.+|++++++++.+.+ ++++++++++.+. .
T Consensus 152 ~~~~~Gd~~~~~Vlv~~~~hp~~~~---~~~~~G~--~vv~v~~~~~~~~D~e~L~~~i~~~t-~~V~v~~Pn~tG~~~~ 225 (481)
T PRK04366 152 YHEARGDTKRTEVIVPDSAHGTNPA---SAAMAGF--KVVEIPSNEDGLVDLEALKAAVGEDT-AALMLTNPNTLGLFER 225 (481)
T ss_pred HhhccCcCCCCEEEEcCCccHhHHH---HHHHcCC--EEEEeecCCCCCcCHHHHHhhcccCC-eEEEEeCCCCccccch
Confidence 3356776 89987766665543 3456677 44555666678899999999987654 4444445554433 3
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe------eEEEEechhHHHHhhcc-
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG------GFILMKKKYKKIINSAV- 253 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~~~~- 253 (1342)
++++|+++|+++|+++++|++|..+..+. . .+.. .+|++++++||||++|.| |++++++++.+.+....
T Consensus 226 dl~eI~~~a~~~gal~iVD~a~~~~~~g~--~-~~~~~GaD~~~~~~hK~l~~P~g~Ggp~~G~l~~~~~~~~~lp~~~v 302 (481)
T PRK04366 226 NILEIAEIVHEAGGLLYYDGANLNAILGK--A-RPGDMGFDVVHLNLHKTFSTPHGGGGPGSGPVGVKEELAPFLPVPVV 302 (481)
T ss_pred HHHHHHHHHHHcCCEEEEEecChhhhccc--C-CccccCCCEEEEechhhcCCCCCCCCCCeeeeeehhhhHhhCCCCee
Confidence 79999999999999999999997654321 1 1222 489999999999965532 78888887776653110
Q ss_pred ----CCcc-------------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 254 ----FPGI-------------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 254 ----~~~~-------------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
..+. .++++.....++...+..+..+++++..++..++++++.+.|.+. +.+.......+.+
T Consensus 303 ~~~g~~~~l~~~r~~~i~r~~a~t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~~~~~~~~~~~~ 381 (481)
T PRK04366 303 EKDGDRYRLDYDRPKSIGRVRAFYGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-YDLPYDRPCMHEF 381 (481)
T ss_pred eccCCceeecccccccCCCcccccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-CcccCCCCeeEEE
Confidence 0000 011111222333333444455567777788899999999999886 4443221122334
Q ss_pred EEEccC---CC-CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 317 LVDLRN---KK-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 317 ~i~~~~---~~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+.... .+ ...++...|.+ +||.+....+|... .+.+|++++..+|.+
T Consensus 382 ~~~~~~~~~~g~~~~~v~~~L~~-~Gi~~~~~~~p~~~-----~~~l~is~~e~~t~e 433 (481)
T PRK04366 382 VLSGKKLKETGVRTLDIAKRLLD-YGFHPPTIYFPLIV-----PEALMIEPTETESKE 433 (481)
T ss_pred EEECccccccCCCHHHHHHHHHH-CCccCCcccccccc-----CCeEEEcccCCCCHH
Confidence 444321 12 23455555554 59987755455432 246999999877753
No 280
>PRK07505 hypothetical protein; Provisional
Probab=99.70 E-value=4.6e-15 Score=179.67 Aligned_cols=315 Identities=17% Similarity=0.179 Sum_probs=183.7
Q ss_pred ceeeeecCCCC----cHHHHHHHhHHHHhccc-cCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYT----SLAVMEAQGTLLTNKYA-EGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l----~~~v~eal~~~l~~~~~-~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.+.+.+ .+++ .|.+.+|+.+.+. .++ .+...+.... ..+...++++.+++++|. ++++++ +|++|+.
T Consensus 48 ~ld~~s-~~~lgl~~~p~v~~A~~~~l~-~~g~~~~~~~~~~~----~~~~~~~l~~~la~~~~~-~~~~~~-sG~~a~~ 119 (402)
T PRK07505 48 FVNFVS-CSYLGLDTHPAIIEGAVDALK-RTGSLHLSSSRTRV----RSQILKDLEEALSELFGA-SVLTFT-SCSAAHL 119 (402)
T ss_pred EEEeec-CCccCCCCCHHHHHHHHHHHH-HhCCCCCCccchhh----hhHHHHHHHHHHHHHhCC-CEEEEC-ChHHHHH
Confidence 455444 5677 5679999998885 442 1211111111 223444566699999987 666677 8999999
Q ss_pred HHHHHcc----CCCCE-EEEee-ccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 104 AVFFSVL----NPGDT-IMGMS-LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 104 ~al~al~----~pGD~-Vlv~~-~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
.++..+. .+|+. |++.+ ..|++. .........+. .++.++.. |++++++++.+.+ .+++++++++
T Consensus 120 ~ai~~~~~~~~~~~~~~vi~~~~~~H~s~-~~~~~~~~~~~--~v~~~~~~-----d~~~l~~~~~~~~-~~~vl~~p~~ 190 (402)
T PRK07505 120 GILPLLASGHLTGGVPPHMVFDKNAHASL-NILKGICADET--EVETIDHN-----DLDALEDICKTNK-TVAYVADGVY 190 (402)
T ss_pred HHHHHHHhcccCCCCCCEEEEchhhhHhH-HhhhhhhhcCC--eEEEeCCC-----CHHHHHHHHhcCC-CEEEEEeccc
Confidence 8886542 22332 44333 223321 11111111233 44555554 8999999887644 4444445555
Q ss_pred C--cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CC-----CCCC-CCCCcEEEecCCccCCCCCeeEEEE-echhHH
Q psy13354 178 S--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GE-----YPNP-VPFADFITSTTHKSLRGPRGGFILM-KKKYKK 247 (1342)
Q Consensus 178 ~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~-----~~~~-l~~~Divv~S~sK~l~gp~GG~iv~-~~~l~~ 247 (1342)
| ...++++|.++|++||++||+||+|+.+.++. +. ..+. .....++++|++|++ |+.||+++. ++++.+
T Consensus 191 ~~G~~~~~~~i~~l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~-~~~Gg~~~~~~~~~~~ 269 (402)
T PRK07505 191 SMGGIAPVKELLRLQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAF-GASGGVIMLGDAEQIE 269 (402)
T ss_pred ccCCcCCHHHHHHHHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhh-hccCeEEEeCCHHHHH
Confidence 6 55689999999999999999999986543321 11 1111 122347788999999 566888875 668888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKE-VLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~-~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
.+.....+++++++.++..++++.+..+ ...+++.+..+++.++.+.+...+... . ......+.++.++.....
T Consensus 270 ~~~~~~~~~t~~~~~~~~a~aa~~a~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~--~g~~~~i~~~~~~~~~~~ 344 (402)
T PRK07505 270 LILRYAGPLAFSQSLNVAALGAILASAEIHLSEELDQLQQKLQNNIALFDSLIPTE---Q--SGSFLPIRLIYIGDEDTA 344 (402)
T ss_pred HHHHhCCCceeCCCCCHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHhc---C--CCCCCCEEEEEeCCHHHH
Confidence 8877666666665544444444444444 233355555566666555443332211 1 122233344444322123
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.++...+++ +||.+.+..+|..+.+ ...+|++++..++.+
T Consensus 345 ~~~~~~l~~-~Gi~v~~~~~p~~~~~---~~~lRi~~~~~~t~e 384 (402)
T PRK07505 345 IKAAKQLLD-RGFYTSPVFFPVVAKG---RAGLRIMFRASHTND 384 (402)
T ss_pred HHHHHHHHH-CCCeEeeecCCCCCCC---CceEEEecCccCCHH
Confidence 456666665 5999998766654432 357999998776643
No 281
>PLN02242 methionine gamma-lyase
Probab=99.70 E-value=5.6e-16 Score=186.63 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=170.0
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH--hhhCCceeEEEE
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM--LNMSGKWFNSIC 144 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~--~~~~g~~~~~v~ 144 (1342)
+++...+||+ .+++++|.+.+++++ ||++|+..++.+++++||+|++....++++...... ....|. .++.
T Consensus 74 ~~Pt~~~LE~----~lA~l~g~~~~l~~~-sG~~Ai~~al~al~~~GD~Vl~~~~~Y~~~~~~~~~~~~~~~G~--~~~~ 146 (418)
T PLN02242 74 FNPTVLNLGR----QMAALEGTEAAYCTA-SGMSAISSVLLQLCSSGGHVVASNTLYGGTHALLAHFLPRKCNI--TTTF 146 (418)
T ss_pred CChhHHHHHH----HHHHHhCCCeEEEEc-cHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHhhhhccCc--eEEE
Confidence 3566666666 999999999888877 999999999999999999999877655544322211 122454 4444
Q ss_pred ecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCc
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FAD 221 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~D 221 (1342)
++.. |++.+++++++.++++|+++.++|| ...++++|+++|++||++||+|++|..+.+ .+.. .+|
T Consensus 147 ~d~~-----d~e~l~~~i~~~~tklV~lesp~NPtG~v~dl~~I~~la~~~gi~livDea~~~~~~------~~~~~g~d 215 (418)
T PLN02242 147 VDIT-----DLEAVKKAVVPGKTKVLYFESISNPTLTVADIPELARIAHEKGVTVVVDNTFAPMVL------SPARLGAD 215 (418)
T ss_pred cCCC-----CHHHHHHhcCcCCCEEEEEecCCCCCCcccCHHHHHHHHHHhCCEEEEECCCCccCC------CHHHcCCc
Confidence 4443 8999999887644677777666666 445999999999999999999999864432 1122 369
Q ss_pred EEEecCCccCCCCC---eeEEEEechhHHHHhhccCC--ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFP--GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296 (1342)
Q Consensus 222 ivv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~--~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~ 296 (1342)
++++|+||+++++. ||++++++++++.++..... ...+.+..+..+++.+ . .+ ..+..+++++.+++.++.
T Consensus 216 ivv~S~SK~l~g~g~~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~--~-~l-~tl~~r~~~~~~~a~~la 291 (418)
T PLN02242 216 VVVHSISKFISGGADIIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELS--E-RL-PHLSLRMKEHCRRAMEYA 291 (418)
T ss_pred EEEEeCccccCCCCCceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHH--c-CC-CcHHHHHHHHHHHHHHHH
Confidence 99999999995443 59999999888888754332 2234333344443322 2 12 255667789999999999
Q ss_pred HHHHhCCcEEeeCC------------------CCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 297 KILDQRGIRIVSGG------------------TKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 297 ~~L~~~g~~~~~~~------------------~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
+.|++.++++..++ ..+.++.+.++. .+.+.++++.-.
T Consensus 292 ~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~----~~~~~~f~~~l~ 347 (418)
T PLN02242 292 KRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDT----EERANRLMRYLQ 347 (418)
T ss_pred HHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECC----HHHHHHHHHHhh
Confidence 99999887776432 123456666642 355667766644
No 282
>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional
Probab=99.70 E-value=9.4e-15 Score=177.11 Aligned_cols=260 Identities=18% Similarity=0.145 Sum_probs=171.3
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc---------cCCCCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 69 KFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV---------LNPGDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al---------~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
+...++++ .+++++|.+++++++ ||++|+..++.++ ++|||+|+++...+++ ....+...|.
T Consensus 63 ~~~~~fe~----~lA~~~g~~~~v~~~-sGt~al~~aL~al~~~~~~~~~~~pGd~VIv~~~t~~a---~~~~v~~~G~- 133 (438)
T PRK15407 63 RFNDAFEK----KLAEFLGVRYALLVN-SGSSANLLAFSALTSPKLGDRALKPGDEVITVAAGFPT---TVNPIIQNGL- 133 (438)
T ss_pred hhHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHHhhccccccCCCCCCEEEECCCCcHH---HHHHHHHcCC-
Confidence 33455665 899999988776655 9999999999876 4899999987755543 3444455666
Q ss_pred eEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC
Q psy13354 140 FNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP 218 (1342)
Q Consensus 140 ~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~ 218 (1342)
.++.++++ +++.+|++.+++.+++. +++|++++ .++.+.++++|.++|++||++||+|++|++|..+.+...+.+.
T Consensus 134 -~pv~vdvd~~~~~id~~~le~~i~~~-tkaVi~~~-~~G~p~dl~~I~~la~~~gi~vIeDaa~a~G~~~~g~~~G~~g 210 (438)
T PRK15407 134 -VPVFVDVELPTYNIDASLLEAAVSPK-TKAIMIAH-TLGNPFDLAAVKAFCDKHNLWLIEDNCDALGSTYDGRMTGTFG 210 (438)
T ss_pred -EEEEEecCCCcCCcCHHHHHHHcCcC-CeEEEEeC-CCCChhhHHHHHHHHHHCCCEEEEECccchhhhcCCeeeeccC
Confidence 55655665 57889999999998764 45555433 2334578999999999999999999999999887766555444
Q ss_pred CCcEEEecCC--ccCCCCCeeEEEEech-hHHHHh---hccCC----------------------------------ccc
Q psy13354 219 FADFITSTTH--KSLRGPRGGFILMKKK-YKKIIN---SAVFP----------------------------------GIQ 258 (1342)
Q Consensus 219 ~~Divv~S~s--K~l~gp~GG~iv~~~~-l~~~l~---~~~~~----------------------------------~~~ 258 (1342)
|+.++||+ |.+.+..||+++++++ +.+.++ ..... ..+
T Consensus 211 --d~~~fSf~~~k~~~~geGG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~ 288 (438)
T PRK15407 211 --DIATLSFYPAHHITMGEGGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLGELPFGYDHKYTYSHLGY 288 (438)
T ss_pred --ceEEEeCCCCCCccccCceEEEECCHHHHHHHHHHHHhCccccccccccccccccccccccccccccccccccccccc
Confidence 77777776 7786667899999873 333322 11100 112
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeCCCCC----eEEEEEccCC-CCCHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSGGTKS----HIILVDLRNK-KITGKIAE 331 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~~~~~----~~v~i~~~~~-~~~~~~~~ 331 (1342)
+.-++..++|+..+.++. +++..++.+++++++.+.|.+.. +.+...+.+. +..++.+.+. ..+.+.+.
T Consensus 289 n~rmsel~AAig~~qL~~----l~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~Rd~l~ 364 (438)
T PRK15407 289 NLKITDMQAAIGLAQLEK----LPGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFPITVKEDAGFTRVELV 364 (438)
T ss_pred ccCccHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEEEEECCcCCCCHHHHH
Confidence 223345566665555444 44667788888999999997753 2221111121 2333444432 23455566
Q ss_pred HHHHHCCceeeeccC
Q psy13354 332 SILESANIICNKNSI 346 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~ 346 (1342)
+.|+++||.+...+.
T Consensus 365 ~~L~~~GI~~~~~~~ 379 (438)
T PRK15407 365 KYLEENKIGTRLLFA 379 (438)
T ss_pred HHHHHCCCCccccCC
Confidence 666667998876554
No 283
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=99.69 E-value=5.1e-15 Score=177.34 Aligned_cols=261 Identities=15% Similarity=0.116 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CC
Q psy13354 74 IEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KE 151 (1342)
Q Consensus 74 Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~ 151 (1342)
+.+++++++++++|.+++++++ ||++|+..++.++ ++|||+|+++.+.++ +....+...|. +++.++.++ ++
T Consensus 32 ~~~~~e~~la~~~g~~~~v~~~-sgt~al~~~l~~~~~~~Gd~Viv~~~t~~---~~~~~~~~~G~--~~v~~d~d~~~~ 105 (375)
T PRK11706 32 FTRRCQQWLEQRFGSAKVLLTP-SCTAALEMAALLLDIQPGDEVIMPSYTFV---STANAFVLRGA--KIVFVDIRPDTM 105 (375)
T ss_pred HHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHHHhCCCCCCEEEECCCCcH---HHHHHHHHcCC--EEEEEecCCCcC
Confidence 3344445889999998777766 9999999888766 799999997775554 44555566777 555556664 46
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--c
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--K 229 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K 229 (1342)
.+|++++++++++. +++|++++ ..+...++++|.++|++||++||+|++|+.|....+...+.+ .|+.++||| |
T Consensus 106 ~~d~~~le~~i~~~-tk~i~~~~-~~G~~~~~~~i~~la~~~~i~vIeD~a~a~g~~~~~~~~g~~--~~~~~~Sf~~~K 181 (375)
T PRK11706 106 NIDETLIEAAITPK-TRAIVPVH-YAGVACEMDTIMALAKKHNLFVVEDAAQGVMSTYKGRALGTI--GHIGCFSFHETK 181 (375)
T ss_pred CcCHHHHHHhcCCC-CeEEEEeC-CCCCccCHHHHHHHHHHcCCEEEEECccccccccCCeeeecC--cCEEEEeCCCCc
Confidence 79999999998764 45555433 234557999999999999999999999998874443322222 477788877 9
Q ss_pred cCCCCCeeEEEEe-chhHHHHhhccCC-------------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHH
Q psy13354 230 SLRGPRGGFILMK-KKYKKIINSAVFP-------------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289 (1342)
Q Consensus 230 ~l~gp~GG~iv~~-~~l~~~l~~~~~~-------------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~ 289 (1342)
.++.+.||+++++ +++.+.++..... ..++..++..+++...+..+ .++...++..
T Consensus 182 ~l~~g~gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~ql~----~l~~~~~~R~ 257 (375)
T PRK11706 182 NYTAGEGGALLINDPALIERAEIIREKGTNRSQFFRGQVDKYTWVDIGSSYLPSELQAAYLWAQLE----AADRINQRRL 257 (375)
T ss_pred cccccCCeEEEECCHHHHHHHHHHHHcCCCcchhhccCCCcceeeecccccCcCHHHHHHHHHHHH----HHHHHHHHHH
Confidence 9955555656654 5666654432211 01111123344444434333 3456677778
Q ss_pred HHHHHHHHHHHhCC----cEEeeCCC----CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCC
Q psy13354 290 KNAKILSKILDQRG----IRIVSGGT----KSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349 (1342)
Q Consensus 290 ~~a~~l~~~L~~~g----~~~~~~~~----~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~ 349 (1342)
++++++.+.|.+.. +.+...+. ..+++++.+++. .+.+.+...|.++||.+...+.|..
T Consensus 258 ~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~r~~l~~~L~~~gI~~~~~~~p~~ 324 (375)
T PRK11706 258 ALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLRDL-EDRSALINFLKEAGIMAVFHYIPLH 324 (375)
T ss_pred HHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEECCc-CCHHHHHHHHHHCCCCccccCCccC
Confidence 88888888887752 33221111 234566666543 2455555566667999886655544
No 284
>KOG1549|consensus
Probab=99.69 E-value=2.7e-15 Score=171.88 Aligned_cols=197 Identities=23% Similarity=0.288 Sum_probs=157.9
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc-c
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-L 110 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-~ 110 (1342)
..++.++++.|.++|...+.+.+ ++|.++.|+ ......+| ++|+.+++++|++ ..++|+.++|++++.++..+ .
T Consensus 49 ~~at~p~~~~Vldam~~~~~~~~--~nPh~~~y~-w~~~~~~E-~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~ 124 (428)
T KOG1549|consen 49 NQATGPMDPRVLDAMLPYLLEYL--GNPHSRSYG-WKAEDAVE-AAREQVAKLINADPSDIVFTSGATESNNLVLKGVAR 124 (428)
T ss_pred cCcCCCCCHHHHHHHHHHHHHhh--cCCCccccc-hhhhHHHH-HHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhc
Confidence 34468899999999999886544 666666332 22222344 4889999999998 45888889999999999998 4
Q ss_pred CCCC----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHH
Q psy13354 111 NPGD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFER 185 (1342)
Q Consensus 111 ~pGD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~ 185 (1342)
.++| +|++...+|++..-.+..+.-.|. .+..+|++.++.+|++.+++.+++.+..+.+.+.++.+ ...|+++
T Consensus 125 ~~~~~~~k~iitl~~eH~~v~~s~~~l~~~g~--~Vt~lpv~~~~~~d~~~~~~~i~~~T~lv~I~~Vnn~~gv~~Pv~E 202 (428)
T KOG1549|consen 125 FFGDKTKKHIITLQTEHPCVLDSCRALQEEGL--EVTYLPVEDSGLVDISKLREAIRSKTRLVSIMHVNNEIGVLQPVKE 202 (428)
T ss_pred cccccccceEEEecccCcchhHHHHHHHhcCe--EEEEeccCccccccHHHHHHhcCCCceEEEEEecccCccccccHHH
Confidence 5677 999999999988878888777786 55555666788899999999999877777777666666 5559999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe-eEEEEec
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG-GFILMKK 243 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G-G~iv~~~ 243 (1342)
|.++|+++|+.+++|+||+.|.. +.+ .+|+++.|.|||+ ||.| |++++++
T Consensus 203 I~~icr~~~v~v~~DaAQavG~i-------~vDV~eln~D~~s~s~HK~y-gp~~iGaLYvr~ 257 (428)
T KOG1549|consen 203 IVKICREEGVQVHVDAAQAVGKI-------PVDVQELNADFLSISAHKIY-GPPGIGALYVRR 257 (428)
T ss_pred HHHHhCcCCcEEEeehhhhcCCc-------cccHHHcCchheeeeccccc-CCCcceEEEEcc
Confidence 99999999999999999999877 444 3799999999999 8887 9999986
No 285
>PRK08354 putative aminotransferase; Provisional
Probab=99.69 E-value=6.3e-15 Score=172.10 Aligned_cols=280 Identities=14% Similarity=0.087 Sum_probs=165.8
Q ss_pred CceeeeecCCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
..+.+..++|+.+|+ +.+++.+++. .. ..|+ . ...+ ++.+++++|. .+++++|+++|+..++
T Consensus 9 ~~i~l~~~~np~~p~~~~~a~~~~~~-~~-~~yp------~---~~~l----~~~ia~~~~~--~I~vt~G~~~al~~~~ 71 (311)
T PRK08354 9 GLIDFSASVNPYPPEWLDEMFERAKE-IS-GRYT------Y---YEWL----EEEFSKLFGE--PIVITAGITEALYLIG 71 (311)
T ss_pred ceeEecCCCCCCCCHHHHHHHHHHHH-Hh-hcCC------C---hHHH----HHHHHHHHCC--CEEECCCHHHHHHHHH
Confidence 457788887777554 7777766653 11 1222 1 2234 4488888883 3555548888988777
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----ccc
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYI 181 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~ 181 (1342)
..+ .+||+|++..+.++ .+...+...|. +++.++ +|++.+++.+++ ++++++++|+|| +..
T Consensus 72 ~~~-~~gd~vlv~~P~y~---~~~~~~~~~g~--~~~~~~------~d~~~l~~~~~~--~~~vi~~~P~NPTG~~~~~~ 137 (311)
T PRK08354 72 ILA-LRDRKVIIPRHTYG---EYERVARFFAA--RIIKGP------NDPEKLEELVER--NSVVFFCNPNNPDGKFYNFK 137 (311)
T ss_pred Hhh-CCCCeEEEeCCCcH---HHHHHHHHcCC--EEeecC------CCHHHHHHhhcC--CCEEEEecCCCCCCCccCHH
Confidence 544 58999997775544 44555566676 444332 578889887763 344555555666 233
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccc
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
.+++|+++|+++|++||+||+|....... .... ....++++||||+| |.+| ||+++ +.+.++.....+..
T Consensus 138 ~l~~l~~~a~~~~~~li~De~y~~f~~~~-~~~~--~~~vi~~~S~SK~~-~l~GlRiG~~v~---~~~~l~~~~~~~~~ 210 (311)
T PRK08354 138 ELKPLLDAVEDRNALLILDEAFIDFVKKP-ESPE--GENIIKLRTFTKSY-GLPGIRVGYVKG---FEEAFRSVRMPWSI 210 (311)
T ss_pred HHHHHHHHhhhcCcEEEEeCcchhccccc-cccC--CCcEEEEeccHhhc-CCccceeeeeee---hHHHHHHcCCCccC
Confidence 68888999999999999999996544322 1111 12357889999999 7677 99998 55666654333322
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
+. .. .+++.++.+...+++.+.++.+.+.++.+.+.+ . . ++.++++++.++ .+.+++..+ .++|
T Consensus 211 ~~---~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l------~-~-~~~~~~~~~~~~---~~~~~~~~l-~~~g 274 (311)
T PRK08354 211 GS---TG-YAFLEFLIEDDFEHLRKTMPLIWREKERFEKAL------Y-V-KSDANFFIKDVG---DAEKFVEFL-KRNG 274 (311)
T ss_pred CH---HH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhc------C-C-CCCCcEEEEECC---CHHHHHHHH-HHCC
Confidence 22 22 233333332111122222333333332222221 1 1 234555666653 234566655 5569
Q ss_pred ceeeeccCCCCCCCccccccccccccccc
Q psy13354 339 IICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 339 I~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
|.+.++..++. ++++|++++...
T Consensus 275 v~v~~g~~f~~------~~~iRi~~~~~~ 297 (311)
T PRK08354 275 ILVRDCTSFGL------PGYIRFSVRDRE 297 (311)
T ss_pred eEEEecccCCC------CCeEEEEeCCHH
Confidence 99999876643 257999998753
No 286
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=99.69 E-value=1.5e-15 Score=170.05 Aligned_cols=308 Identities=16% Similarity=0.153 Sum_probs=194.2
Q ss_pred eecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc
Q psy13354 33 IASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 33 ~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~ 110 (1342)
+.|.|..+ |.++++|.++-. .+...|+..+....+++ ++++.+|. ..++|.+|||+||..++.+.+
T Consensus 4 f~SDn~~g~~~~m~eam~~a~~-------~~~~~YG~D~~~~~~e~----~~ae~~g~-~a~~Fv~sGT~aN~lal~~~~ 71 (342)
T COG2008 4 FRSDNVAGPTPEMREALAAANA-------VGDDVYGEDPTTNALEQ----RIAELFGK-EAALFVPSGTQANQLALAAHC 71 (342)
T ss_pred cccCccCCCCHHHHHHHHhccc-------cCCCCCCCCHHHHHHHH----HHHHHhCC-ceEEEecCccHHHHHHHHHhc
Confidence 34455543 448888776542 22334565665556666 99999999 555555599999999999999
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc------CCeEEEEcCCCCC----cc
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN------KPKLIIAGASAYS----QY 180 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~------~~~liv~~~s~~~----~~ 180 (1342)
+||+.|++....|....-. ..++..+-. ...+.....+|.++++++++.+... +|.+++.+..+.. +.
T Consensus 72 ~~~~~vi~~~~aHi~~~E~-Ga~~~~~~~-~~~~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy~l 149 (342)
T COG2008 72 QPGESVICHETAHIYTDEC-GAPEFFGGG-QKLPIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVYPL 149 (342)
T ss_pred CCCCeEEEeccccceeccc-CcHHHHcCC-ceeccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceecCH
Confidence 9999999754333221111 123333321 3343344578999999999987642 3566666544422 44
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC---CCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCcc
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~ 257 (1342)
.++++|.++|++||+.|++|+|..+....... +.. ...+|++.++++|.++.|.|.+++++.++++.++.......
T Consensus 150 ~el~~i~~~~k~~~l~LHmDGAR~~nA~valg-~~~~~~~~~~D~v~~~~tK~g~~~~gAiv~gn~~~~~~a~~~rK~~G 228 (342)
T COG2008 150 DELEAISAVCKEHGLPLHMDGARLANALVALG-VALKTIKSYVDSVSFCLTKGGGAPVGAIVFGNRDFAKRARRWRKRAG 228 (342)
T ss_pred HHHHHHHHHHHHhCCceeechHHHHHHHHHcC-CCHHHHHhhCCEEEEecccCCcceeeeEEEcCHHHHHHHHHHHHHhc
Confidence 47899999999999999999997544332211 111 12479999999999977777888899998887765433332
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-CCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-RGIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.+.......++....+++. .-+.....+-++.+++|.+.+.. .|+++..+ +.+|++++++++...........+..
T Consensus 229 gl~~k~r~laA~~~~~l~~--~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~-~~tN~vf~~l~~~~i~~l~~~~~~~~ 305 (342)
T COG2008 229 GLMRKARFLAAQGLYALED--DVWRLAADHANAMAARLAEGLEAKPGVKLAFP-VETNMVFVRLPESAIEALRLAGALFY 305 (342)
T ss_pred ccHhhhhHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHhhhhcCCceeccC-CcccEEEEECChHHHHHHHhhchhhe
Confidence 2222222333333333332 12333345556669999999995 59998764 78999999988654322233333333
Q ss_pred CCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.|+++.+.. ..+|+.++..++.
T Consensus 306 ~~~~~~~~~-----------~~vRfvts~a~~~ 327 (342)
T COG2008 306 RGVLIGAHG-----------EIVRFVTSWATSE 327 (342)
T ss_pred eeeeccCCC-----------ceEEEEeeccCCH
Confidence 344443221 2489988887663
No 287
>KOG0256|consensus
Probab=99.69 E-value=2.7e-15 Score=167.24 Aligned_cols=290 Identities=14% Similarity=0.120 Sum_probs=198.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCC-----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEE
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAE-----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNS 142 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~-----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~ 142 (1342)
-.+...+.+++++-+...-|.. +-+++++++|.|+..++..+..|||..+++.+.||++.... ....++++
T Consensus 120 y~Gl~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcLadpgdafLvPtPyY~gfdrdl----~~rTgvei 195 (471)
T KOG0256|consen 120 YHGLPSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCLADPGDAFLVPTPYYPGFDRDL----RWRTGVEI 195 (471)
T ss_pred ccCchHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHhcCCCceeeecCCCCCcccccc----eeccCceE
Confidence 3445578887777777765543 34555558899999999999999999999988888774322 22334466
Q ss_pred EEecCC--CCCCCCHHHHHHHHHh-----cCCeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhc
Q psy13354 143 ICYGLN--KKEKIDYKKVEYLAKK-----NKPKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA 210 (1342)
Q Consensus 143 v~~~~~--~~~~id~e~Le~~i~~-----~~~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~ 210 (1342)
+|+.+. .+++++++.+|+++.+ .+.+-+++.+|.|| .+..+..+.++|.++++.||+||+|+...++.
T Consensus 196 vpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~~~e~L~~ll~Fa~~kniHvI~DEIya~sVF~~ 275 (471)
T KOG0256|consen 196 VPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTLSPEELISLLNFASRKNIHVISDEIYAGSVFDK 275 (471)
T ss_pred EEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCccCHHHHHHHHHHHhhcceEEEeehhhcccccCc
Confidence 665544 6789999999987753 23344555565555 44468899999999999999999998777766
Q ss_pred CCCCCCCC-------CCc--EEEecCCccCCCCCe---eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc
Q psy13354 211 GEYPNPVP-------FAD--FITSTTHKSLRGPRG---GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL 277 (1342)
Q Consensus 211 ~~~~~~l~-------~~D--ivv~S~sK~l~gp~G---G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l 277 (1342)
..+.+.++ ..| -++.|+||-| |.+| |+|++.. ++.....+....+..+ +.+.-..+..+.-.+..
T Consensus 276 ~~F~Sv~ev~~~~~~~~~rvHivyslSKD~-GlpGfRvGviYS~ne~VvsaA~kmssf~~vS-s~tQ~~la~LLSD~~f~ 353 (471)
T KOG0256|consen 276 SEFRSVLEVRKDPHLDPDRVHIVYSLSKDF-GLPGFRVGVIYSNNEDVVSAATKMSSFGLVS-SQTQYLLASLLSDEEFT 353 (471)
T ss_pred cCceEHHHHhhccccCCCcEEEEEEecccc-CCCceEEEEEEecChHHHHHHHHHhhccCCc-HHHHHHHHHHhchHHHH
Confidence 55444332 112 4578999999 8888 9999876 4555554432222222 11111222222223334
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC------CHHHHHHHHHHCCceeeeccCCCCCC
Q psy13354 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI------TGKIAESILESANIICNKNSIPNDPE 351 (1342)
Q Consensus 278 ~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~------~~~~~~~ll~~~GI~v~~~~~p~~~~ 351 (1342)
..++.+..+++..+-+++.+.|+++|++... ..++.++|++++..-. ..++...++.+.++.++|+.-..+..
T Consensus 354 ~~yl~en~~Rl~~rh~~~~~gLk~lgI~cl~-s~AGlF~wvDlr~lL~s~tfe~El~Lw~~i~~~vklnlSpG~s~~C~E 432 (471)
T KOG0256|consen 354 REYLRENNKRLRIRHRYIVEGLKALGIPCLK-SNAGLFCWVDLRKLLTSLTFEGELELWERILDNVKLNLSPGSSCHCHE 432 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHhcCCceee-cCCeeEEEEEhHHhcCcCChHHHHHHHHHHHHhhccccCCCCcceecC
Confidence 4467778889999999999999999999876 4567899999865332 23677788887799998765554443
Q ss_pred Ccccccccccccccccc
Q psy13354 352 KPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 352 ~~~~~~~lRi~~~~~~t 368 (1342)
+|.+|++++....
T Consensus 433 ----pGWFRvcFAn~~~ 445 (471)
T KOG0256|consen 433 ----PGWFRVCFANMSE 445 (471)
T ss_pred ----CCeEEEEeccCCH
Confidence 4789999887533
No 288
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=99.68 E-value=1.1e-14 Score=171.68 Aligned_cols=287 Identities=15% Similarity=0.153 Sum_probs=191.1
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTI 116 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~V 116 (1342)
|.++.++..+|.++..... ..++..|++.+...+||+ .+++++|.++++.++ +|+.|++.++...++|||+|
T Consensus 49 DLlSDS~T~aMs~~q~a~~---~vGDd~Yagd~s~~~LE~----~vAe~lG~e~aV~v~-sGTaAl~ll~~l~v~pGd~V 120 (460)
T PRK13237 49 DLLTDSGTNAMSDRQWAGM---MIGDEAYAGSRNFYHLEE----TVQEYYGFKHVVPTH-QGRGAENLLSRIAIKPGQYV 120 (460)
T ss_pred ECcccCCchhccHHHHHHH---hhcchhhcCCCcHHHHHH----HHHHHHCCCeEEEeC-CHHHHHHHHHHhCCCCcCEE
Confidence 4444444455444421111 223445677777778888 889999999877777 99999998777678999975
Q ss_pred EEeeccCCccchhhH-HhhhCCceeEEEEec----------CCCCCCCCHHHHHHHHHhcCC------eEEEEcCC--CC
Q psy13354 117 MGMSLQEGGHLTHGM-MLNMSGKWFNSICYG----------LNKKEKIDYKKVEYLAKKNKP------KLIIAGAS--AY 177 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~----------~~~~~~id~e~Le~~i~~~~~------~liv~~~s--~~ 177 (1342)
++ ..++.... .+...|. ..+.+. ...+|.+|++.+++.+++.++ ++++.++. ..
T Consensus 121 --p~---n~~f~Tt~ahI~~~Ga--~fvDi~~d~a~~~~~~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGq 193 (460)
T PRK13237 121 --PG---NMYFTTTRYHQELNGG--IFVDIIIDEAHDAQSDHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQ 193 (460)
T ss_pred --CC---ccchHhhHHHHHhCCc--EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCe
Confidence 22 22333322 2455555 233221 124688999999999986532 22333221 11
Q ss_pred C-cccCHHHHHHHHHHcCCEEEEEcccchhhh---------hcCCCCC-----CCCCCcEEEecCCccCCCCCeeEEEEe
Q psy13354 178 S-QYIDFERFYHIAKNINSYFMVDMAHYAGLI---------AAGEYPN-----PVPFADFITSTTHKSLRGPRGGFILMK 242 (1342)
Q Consensus 178 ~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~---------~~~~~~~-----~l~~~Divv~S~sK~l~gp~GG~iv~~ 242 (1342)
+ ...++++|.++|++||+.||.|+|+.+|.. +.+.... ....+|.+++|++|.+.++.||+++++
T Consensus 194 pvs~~~m~~I~elA~~~Gl~Vi~DaAra~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~GG~i~t~ 273 (460)
T PRK13237 194 PVSMANMRAVRELCDKHGIKVFFDATRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNIGGFLAMN 273 (460)
T ss_pred eCCHHhHHHHHHHHHHcCCEEEEECcchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCCceEEEEC
Confidence 1 234899999999999999999999988732 1122111 123579999999999988889999987
Q ss_pred c-hhHHHHhhcc--CCc--cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 243 K-KYKKIINSAV--FPG--IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 243 ~-~l~~~l~~~~--~~~--~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
+ ++.+.++... +.+ .+++.....+.|++..+.+.... ++.++..++.++|.+.|.+.|++++. |.++|.++
T Consensus 274 D~eL~~~~r~~~~~~eG~~tygg~~grd~~alAvgl~E~~~~---~y~~~ri~~~~~l~~~L~~~Gvpv~~-p~ggH~v~ 349 (460)
T PRK13237 274 DEELFDEAKELVVVYEGMPSYGGMAGRDMEAMAIGIEESVQY---EYIEHRVGQVRYLGEKLLAAGVPIVE-PVGGHAVF 349 (460)
T ss_pred CHHHHHHHHHhccccCCCcCCCChhhhHHHHHHhHHHhhchH---HHHHHHHHHHHHHHHHHHHCCCceec-CCCceEEE
Confidence 6 6777776642 222 22332223566777777776552 67777888999999999999999976 57789999
Q ss_pred EEccCC-------C-CCHHHHHHHHHHCCceee
Q psy13354 318 VDLRNK-------K-ITGKIAESILESANIICN 342 (1342)
Q Consensus 318 i~~~~~-------~-~~~~~~~~ll~~~GI~v~ 342 (1342)
++.... . ....++..+..+.||-..
T Consensus 350 vda~~~lph~~~~~~p~~al~~~ly~~~GiR~~ 382 (460)
T PRK13237 350 LDARRFLPHLPQDQFPAQALAAELYIESGVRSM 382 (460)
T ss_pred EEhHHhCCCCCcccChHHHHHHHHHHHhCcCeE
Confidence 986431 1 235677777788888664
No 289
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=99.68 E-value=8e-15 Score=172.35 Aligned_cols=286 Identities=17% Similarity=0.200 Sum_probs=189.5
Q ss_pred CCCcHHHHHHHhHH-HHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCE
Q psy13354 37 NYTSLAVMEAQGTL-LTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~-l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~ 115 (1342)
|.++.+...||.++ +.. ...++..|.+.+.+.+||+ .+++++|.++++.++ ||+.|++.+....++|||+
T Consensus 42 DLltDsgT~aMs~~q~a~----~~~GDe~yag~~s~~~lE~----~va~~~G~~~av~v~-sGT~Al~ll~~l~l~pGDe 112 (450)
T TIGR02618 42 DLLTDSGTNAMSDKQWAG----LMMGDEAYAGSRNFYHLER----TVRELYGFKYVVPTH-QGRGAENLLSQIAIKPGDY 112 (450)
T ss_pred EcccCCCcHHHHHHHHHH----hhhcchhhcCCCcHHHHHH----HHHHHHCCCeEEEcC-CHHHHHHHHHHhCCCCcCE
Confidence 34444444555554 321 1222344777777788888 889999999887777 9999988877777999998
Q ss_pred EEEeeccCCccchhhHH-hhhCCceeEEEEecC----------CCCCCCCHHHHHHHHHhcCC---eEEEEcCCCC---C
Q psy13354 116 IMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGL----------NKKEKIDYKKVEYLAKKNKP---KLIIAGASAY---S 178 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~----------~~~~~id~e~Le~~i~~~~~---~liv~~~s~~---~ 178 (1342)
| ++ +.++..... +...|. .++.++. ..+|.+|++.+++.+++..+ .++.+..+++ +
T Consensus 113 V--ps---n~~f~Tt~ahIe~~Ga--v~vDi~~dea~~~~~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG 185 (450)
T TIGR02618 113 V--PG---NMYFTTTRYHQEKNGA--TFVDIIIDEAHDAQLNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGG 185 (450)
T ss_pred E--CC---ceeHHHHHHHHHhCCe--EEEeeecccccccccCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCC
Confidence 7 22 334333333 466665 3443322 24588999999999986432 2223222232 2
Q ss_pred c---ccCHHHHHHHHHHcCCEEEEEcccchhhhhc------CCC-CCC-------CCCCcEEEecCCccCCCCCeeEEEE
Q psy13354 179 Q---YIDFERFYHIAKNINSYFMVDMAHYAGLIAA------GEY-PNP-------VPFADFITSTTHKSLRGPRGGFILM 241 (1342)
Q Consensus 179 ~---~~~l~~I~~la~~~gi~LIvDea~~~g~~~~------~~~-~~~-------l~~~Divv~S~sK~l~gp~GG~iv~ 241 (1342)
. ..++++|.++|++||++||.|+|+.++.-+. +-. .++ +..+|.+++|++|..++|.||+++.
T Consensus 186 ~pvs~~~l~~I~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~~~~GG~l~~ 265 (450)
T TIGR02618 186 QPVSMANMREVRELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCLVNIGGFLCM 265 (450)
T ss_pred eeCCHHHHHHHHHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCCCCCceEEEe
Confidence 2 3478999999999999999999998753111 111 112 2357999999999998899999995
Q ss_pred -echhHHHHhhccCC--c--cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 242 -KKKYKKIINSAVFP--G--IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 242 -~~~l~~~l~~~~~~--~--~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
++++.+.++..... + .+|+.....+.|++.++.+..+ ..+.++...++++|.+.|.+.|++++. +.++|.+
T Consensus 266 ~d~~l~~k~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~---~~y~~~r~~~a~~La~~L~~~Gvpv~~-p~ggh~V 341 (450)
T TIGR02618 266 NDDEMFQSAKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVD---YEYIEHRVKQVRYLGDKLKAAGVPIVE-PVGGHAV 341 (450)
T ss_pred CCHHHHHHHHHHhhhcCCccccCchhhhhHHHHHHHHHHhhh---HHHHHHHHHHHHHHHHHHHHCCCcccC-CCCcceE
Confidence 45777777654222 1 1222122345556667766654 245677788899999999999999854 6788999
Q ss_pred EEEccCC-------C-CCHHHHHHHHHHCCceee
Q psy13354 317 LVDLRNK-------K-ITGKIAESILESANIICN 342 (1342)
Q Consensus 317 ~i~~~~~-------~-~~~~~~~~ll~~~GI~v~ 342 (1342)
+++.... . ....++..+..+.||-..
T Consensus 342 ~vda~~~lph~~~~~~p~~al~~~ly~~~gir~~ 375 (450)
T TIGR02618 342 FLDARRFLPHIPQDQFPAQSLAASIYVETGVRSM 375 (450)
T ss_pred EEEhHHhCCCCChhhChHHHHHHHHHHHhCccEE
Confidence 9987542 1 234677777788788655
No 290
>PLN02880 tyrosine decarboxylase
Probab=99.67 E-value=8.7e-15 Score=179.29 Aligned_cols=292 Identities=14% Similarity=0.112 Sum_probs=194.2
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCc--------eEecCCHHHHHHHHHHHccC----------CCCEEEEeeccCCccch
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAA--------NVQPHSGSQANQAVFFSVLN----------PGDTIMGMSLQEGGHLT 128 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~--------vi~~~sGs~A~~~al~al~~----------pGD~Vlv~~~~~~~~~s 128 (1342)
.++...++|+.+.+|+++++|.++. -++++|||+|+..++.+.-. ...-|+. .+..+|++
T Consensus 116 ~sp~~~~lE~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~--~S~~aH~S 193 (490)
T PLN02880 116 TSPAATELEMIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVY--ASDQTHSA 193 (490)
T ss_pred cCcccHHHHHHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEE--EcCCchHH
Confidence 4566779999999999999998742 34555899999888766521 0122221 23356888
Q ss_pred hhHHhhhCCceeE-EEEecCC--CCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEE
Q psy13354 129 HGMMLNMSGKWFN-SICYGLN--KKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFM 198 (1342)
Q Consensus 129 ~~~~~~~~g~~~~-~v~~~~~--~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LI 198 (1342)
..+++...|.+.+ ++.++.+ +++++|++.|++.+.+. .|.+|+.+.+.+. ...|+++|+++|++||+|++
T Consensus 194 v~Kaa~~lGlg~~~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDpl~eI~~i~~~~~iwlH 273 (490)
T PLN02880 194 LQKACQIAGIHPENCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDPLLELGKIAKSNGMWFH 273 (490)
T ss_pred HHHHHHHcCCCHHHEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCcHHHHHHHHHHcCCEEE
Confidence 8888899987532 2334554 46899999999988643 3566666554433 66699999999999999999
Q ss_pred EEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEech--hHHHHhhccCCcc---------------
Q psy13354 199 VDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKKK--YKKIINSAVFPGI--------------- 257 (1342)
Q Consensus 199 vDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~--l~~~l~~~~~~~~--------------- 257 (1342)
||+||+.+......+. .-+..+|.++.++|||+..|.| |+++.++. +...+... ..+.
T Consensus 274 VDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~~~g~llvr~~~~l~~~~~~~-~~Yl~~~~~~~~~~~~~~~ 352 (490)
T PLN02880 274 VDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNFDCSLLWVKDRNALIQSLSTN-PEFLKNKASQANSVVDYKD 352 (490)
T ss_pred EehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCccEEEEEEeCHHHHHHHHccC-HHHhcCccccccCCCChhc
Confidence 9999987755332211 1223579999999999988999 88888752 22222110 0000
Q ss_pred --ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCC--------
Q psy13354 258 --QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKIT-------- 326 (1342)
Q Consensus 258 --~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~-------- 326 (1342)
...+.-.....++..+.....+++.++.++..++++++.+.+.+. +++++.+ +..+++.+.+++...+
T Consensus 353 ~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~~~~el~~~-~~~~iv~Fr~~~~~~~~~~~~~~n 431 (490)
T PLN02880 353 WQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQDSRFEVVTP-RIFSLVCFRLVPPKNNEDNGNKLN 431 (490)
T ss_pred cCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CceEEEEEEEeCCCCChhhHHHHH
Confidence 000001113344445555566677778888889999999999774 7888764 3466777777643221
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++.+++.++..+++....+.+ ..++|++++..+|.
T Consensus 432 ~~l~~~l~~~g~~~v~~t~~~g-------~~~lR~~~~n~~tt 467 (490)
T PLN02880 432 HDLLDAVNSSGKIFISHTVLSG-------KYVLRFAVGAPLTE 467 (490)
T ss_pred HHHHHHHHhCCCEEEEEEEECC-------EEEEEEEecCCCCC
Confidence 3455666666788887654443 24699999988875
No 291
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=99.67 E-value=1.2e-15 Score=176.43 Aligned_cols=221 Identities=20% Similarity=0.148 Sum_probs=150.9
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC----C
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK----E 151 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~----~ 151 (1342)
+++++.+++++|.++++++++|++.|+.+++.++++|||+|++.. ++|.+....+...|..+..++.+.+++ +
T Consensus 62 ~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al~~~gd~Vlv~~---~~h~s~~~~~~~~g~~~~~v~~~~~~~~~~~~ 138 (294)
T cd00615 62 KEAQELAARAFGAKHTFFLVNGTSSSNKAVILAVCGPGDKILIDR---NCHKSVINGLVLSGAVPVYLKPERNPYYGIAG 138 (294)
T ss_pred HHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHcCCCCCEEEEeC---CchHHHHHHHHHCCCEEEEecCccCcccCcCC
Confidence 445558999999998887676788899999999999999999766 455555556666777544443333332 4
Q ss_pred CCCHHHHHHHHHhc-CCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-CCC-CCCcEEEecC
Q psy13354 152 KIDYKKVEYLAKKN-KPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-NPV-PFADFITSTT 227 (1342)
Q Consensus 152 ~id~e~Le~~i~~~-~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-~~l-~~~Divv~S~ 227 (1342)
.+|++++++.+++. .+++++++++++. ...|+++|+++|+++|++|++|+||+......+..+ ... ..+|++++|+
T Consensus 139 ~i~~~~l~~~l~~~~~~k~v~l~~p~~~G~~~dl~~I~~~~~~~g~~livDeA~~~~~~~~~~~~~~~~~~~~div~~S~ 218 (294)
T cd00615 139 GIPPETFKKALIEHPDAKAAVITNPTYYGICYNLRKIVEEAHHRGLPVLVDEAHGAHFRFHPILPSSAAMAGADIVVQST 218 (294)
T ss_pred CCCHHHHHHHHHhCCCceEEEEECCCCCCEecCHHHHHHHHHhcCCeEEEECcchhhhccCcccCcchhhcCCcEEEEch
Confidence 68999999999753 4677666666655 445999999999999999999999975432222111 111 1479999999
Q ss_pred CccCCCCCe-eEEEEechh--HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 228 HKSLRGPRG-GFILMKKKY--KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 228 sK~l~gp~G-G~iv~~~~l--~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
||+++|+.+ |++..+.+. ...+......+..++|+.+..+++..+...+.. ...+..+++.+++.++++.+.
T Consensus 219 hK~l~g~~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~-~g~~~~~~~~~~~~~~r~~l~ 293 (294)
T cd00615 219 HKTLPALTQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMAL-EGKELVEELIELALYARQEIN 293 (294)
T ss_pred hcccchHhHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHh
Confidence 999977765 666665532 223333222333455656666666655544432 345567778888888888765
No 292
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=99.67 E-value=5.9e-15 Score=176.77 Aligned_cols=308 Identities=12% Similarity=0.084 Sum_probs=201.4
Q ss_pred ceeeeecCCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceE-ecCCHHHHHHH
Q psy13354 29 NIELIASENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANV-QPHSGSQANQA 104 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi-~~~sGs~A~~~ 104 (1342)
.+.+.++...++|. |++++...... .. .......++.+.+++.+++++|.+ +.++ +++|||.++++
T Consensus 13 ~~~f~~Gp~~~~~~~v~~a~~~~~~~-----~~-----hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~ 82 (378)
T PRK03080 13 DPRFSSGPCKKRPGWQLEALADALLG-----RS-----HRQKPVKALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEM 82 (378)
T ss_pred CCCcCCCCcCCChHHHHHHHHhhhcc-----cC-----cCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHH
Confidence 35578888888888 99998755421 00 111234567777999999999974 3444 55699999999
Q ss_pred HHHHccCC-CCEEEEeeccCCccchhhHHhhhCCc-eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-ccc
Q psy13354 105 VFFSVLNP-GDTIMGMSLQEGGHLTHGMMLNMSGK-WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYI 181 (1342)
Q Consensus 105 al~al~~p-GD~Vlv~~~~~~~~~s~~~~~~~~g~-~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~ 181 (1342)
++.+++.+ ++.|++ +..++..+.. ...+..|. .++.+.. +.++.+|+++++. ++.+.+.+.++.+ ...
T Consensus 83 ~~~~l~~~~~~~vi~-~g~f~~~~~~-~~~~~~g~~~v~~~~~--~~g~~~d~~~i~~-----~~~V~~~h~~t~tG~~~ 153 (378)
T PRK03080 83 ALWSLLGARRVDHLA-WESFGSKWAT-DVVKQLKLEDPRVLEA--DYGSLPDLSAVDF-----DRDVVFTWNGTTTGVRV 153 (378)
T ss_pred HHHhcCCCCcceEEE-eCHHHHHHHH-HHHhhcCCCCceEecc--CCCCCCCHhhcCC-----CCCEEEEecCCccceec
Confidence 99999875 445543 4444443211 01244566 6666644 4455678776442 3345555555544 555
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------ 254 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------ 254 (1342)
|+++|++ +++|+++++|++|++|...- .++.+|++++|.||||++|.| |+++.+++..+.+.....
T Consensus 154 pi~~I~~--~~~g~~~vVDa~qs~G~~pi-----dv~~iD~~~~s~~K~l~~P~G~g~l~v~~~~~~~~~p~~~~~~~~~ 226 (378)
T PRK03080 154 PVARWIG--ADREGLTICDATSAAFALPL-----DWSKLDVYTFSWQKVLGGEGGHGMAILSPRAVERLESYTPARPIPK 226 (378)
T ss_pred cchhhcc--ccCCCeEEEecccccccCCC-----CHHHCcEEEEehhhhCCCCCceEEEEECHHHHHhhhcccCCCCCch
Confidence 9999999 88999999999999987721 112369999999999988999 999999988777654211
Q ss_pred ----------------CccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-cEEeeC-C-C-CC
Q psy13354 255 ----------------PGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-IRIVSG-G-T-KS 313 (1342)
Q Consensus 255 ----------------~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~-~-~-~~ 313 (1342)
....++++.....++..++..+.+. +++.+.++..++++++++.|.+.+ +.+... + . ..
T Consensus 227 ~~~~~~~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~ 306 (378)
T PRK03080 227 FFRLTKGGKAIENSFKGQTINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWATPLVADPATRSN 306 (378)
T ss_pred hheeccchHHhhhhhcCCcccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccCc
Confidence 0111334444455556677666665 688889999999999999999876 455431 1 1 12
Q ss_pred eEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 314 HIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 314 ~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++.+.+++. ..+.++...++++ ||.+....... ..+.+|+|++.+++.
T Consensus 307 ~i~~~~~~~~~~~~~~~~~~~l~~~-~i~v~~g~~~~------~~~~vRis~~~~~t~ 357 (378)
T PRK03080 307 TSVTLDFVDAQAAVDAAAVAKLLRE-NGAVDIEPYRD------APNGLRIWCGPTVEP 357 (378)
T ss_pred cEEEEEcCCchHHHHHHHHHHHHHc-CCeeccccccC------CCCcEEEecCCCCCH
Confidence 3566666541 1234566666665 88776432211 135699999988774
No 293
>PLN02590 probable tyrosine decarboxylase
Probab=99.67 E-value=1.5e-14 Score=176.84 Aligned_cols=296 Identities=14% Similarity=0.094 Sum_probs=199.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCCc--------eEecCCHHHHHHHHHHHccC--------C--CCEEEEeeccCCcc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEAA--------NVQPHSGSQANQAVFFSVLN--------P--GDTIMGMSLQEGGH 126 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~~--------vi~~~sGs~A~~~al~al~~--------p--GD~Vlv~~~~~~~~ 126 (1342)
+..++...++|+.+.+|+++++|.++. -+++++||+|+..++.+.-. . .+-|+. ....+|
T Consensus 162 ~~~sPa~t~lE~~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy--~S~~aH 239 (539)
T PLN02590 162 WLTSPAATELEIIVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVY--GSDQTH 239 (539)
T ss_pred cccCchhHHHHHHHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEE--ecCCch
Confidence 345677789999999999999998742 34455999999888776421 0 122221 233577
Q ss_pred chhhHHhhhCCceeE-EEEecCC--CCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCE
Q psy13354 127 LTHGMMLNMSGKWFN-SICYGLN--KKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSY 196 (1342)
Q Consensus 127 ~s~~~~~~~~g~~~~-~v~~~~~--~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~ 196 (1342)
++..+++...|++.. +..++.+ +++++|++.|++++.+. .|.+|+.+.+... ...|+++|+++|++||+|
T Consensus 240 ~Sv~KAa~ilGlg~~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDpl~~Ia~i~~~~g~W 319 (539)
T PLN02590 240 SSFRKACLIGGIHEENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDPLVPLGNIAKKYGIW 319 (539)
T ss_pred HHHHHHHHHcCCCcccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCCHHHHHHHHHHhCCe
Confidence 888888888887522 3334555 56899999999998653 3666666554443 666999999999999999
Q ss_pred EEEEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEech--hHH-------HHhhcc---------C
Q psy13354 197 FMVDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKKK--YKK-------IINSAV---------F 254 (1342)
Q Consensus 197 LIvDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~--l~~-------~l~~~~---------~ 254 (1342)
++||+||+........+. .-++.+|.++.++|||+..|.+ |+++.++. +.+ ++.... .
T Consensus 320 lHVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~ 399 (539)
T PLN02590 320 LHVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQTCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYK 399 (539)
T ss_pred EEEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCcCEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCcc
Confidence 999999986554322221 2234589999999999988888 88887762 222 221100 0
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCC--------
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKI-------- 325 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~-------- 325 (1342)
.+....+.......++..++.+..+++.+.+++..++++++.+.+.+. +|+++.+ +...++.+++.+...
T Consensus 400 d~~i~lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~~~fel~~~-~~l~iVcFr~~~~~~~~~~~~~l 478 (539)
T PLN02590 400 DWQISLSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQDPSFEVVTT-RYFSLVCFRLAPVDGDEDQCNER 478 (539)
T ss_pred ccCCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEecC-CceEEEEEEecCCCCCHHHHHHH
Confidence 111222223445566777777777789999999999999999999885 6888764 445666666654221
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.++.+++.+...+++.+..+.+ ...+|++++...|..
T Consensus 479 n~~l~~~l~~~G~~~vs~t~~~g-------~~~lR~~i~n~~T~~ 516 (539)
T PLN02590 479 NRELLAAVNSTGKIFISHTALSG-------KFVLRFAVGAPLTEE 516 (539)
T ss_pred HHHHHHHHHhCCCEEEEeeEECC-------EEEEEEEecCCCCCH
Confidence 23556666666666666554333 236999998887754
No 294
>PLN02724 Molybdenum cofactor sulfurase
Probab=99.67 E-value=1.9e-14 Score=187.08 Aligned_cols=304 Identities=15% Similarity=0.101 Sum_probs=196.9
Q ss_pred CCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--C-ceEecCCHHHHHHHHHHHc-c
Q psy13354 36 ENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--A-ANVQPHSGSQANQAVFFSV-L 110 (1342)
Q Consensus 36 ~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~-~vi~~~sGs~A~~~al~al-~ 110 (1342)
..++++. +.+++.....+.+ +++.+.+. ......+..+++++.+++++|++ + .++|+.|+|+|+..++.++ +
T Consensus 43 tt~~~~~~V~~~~~~~~~~~~--~np~s~~~-~s~~~~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~~ 119 (805)
T PLN02724 43 ATLYSESQLEAALADFSSNVY--GNPHSQSD-SSMRSSDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFPW 119 (805)
T ss_pred CCCCCHHHHHHHHHHHHhhcc--CCCCcCcc-hhhhHHHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCCC
Confidence 4555665 4444434433222 34443222 23334455666999999999985 3 4678878999999999888 7
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC------CCCCCCH--HHHHHHHH---------hcCCeEEE-E
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN------KKEKIDY--KKVEYLAK---------KNKPKLII-A 172 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~------~~~~id~--e~Le~~i~---------~~~~~liv-~ 172 (1342)
.+||+|++...+|++...........|+.+..++++.+ +.+.+++ +++++.++ ..+.+++. .
T Consensus 120 ~~gd~Iv~t~~eH~svl~~~~~a~~~G~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~ 199 (805)
T PLN02724 120 SSESHFCYTLENHNSVLGIREYALEKGAAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFP 199 (805)
T ss_pred CCCCeEEEeeccccchHHHHHHHHHcCCeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEE
Confidence 89999999888887766555555566776666654311 2344443 55666532 12234444 4
Q ss_pred cCCCCC-cccCHHHHHHHHHHc--------CCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEe
Q psy13354 173 GASAYS-QYIDFERFYHIAKNI--------NSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMK 242 (1342)
Q Consensus 173 ~~s~~~-~~~~l~~I~~la~~~--------gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~ 242 (1342)
+.+|.+ ...|++.|..+++.. ++++++|+||++|...-+.. .-.+|++++|+|||++||.| |+++++
T Consensus 200 ~vsN~tG~i~pi~~i~~~~~~~~~~~~~~g~~~v~vDaaQ~~g~~piDv~---~~~~Dfl~~S~HK~~GgP~G~G~L~vr 276 (805)
T PLN02724 200 SECNFSGAKFPLDLVKLIKDNQHSNFSKSGRWMVLLDAAKGCGTSPPDLS---RYPADFVVVSFYKIFGYPTGLGALLVR 276 (805)
T ss_pred ccccCCCCcCCHHHHHHHHHhcccccccCcceEEEeehhhhcCCCCCChh---hcCCCEEEEecceeccCCCCceEEEEe
Confidence 456666 455898775555532 35799999999887621110 01379999999999966999 999999
Q ss_pred chhHHHHhhccCCc-----------------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 243 KKYKKIINSAVFPG-----------------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~-----------------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++.+.+.+....+ -.|+++.+..+++.+++......+++.+.++..+.++++.+.|
T Consensus 277 ~~~~~~l~p~~~GGg~~~~~~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L 356 (805)
T PLN02724 277 RDAAKLLKKKYFGGGTVAASIADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSL 356 (805)
T ss_pred hhhhhhhcCCccCCCceEEEecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence 98777665432211 2356666777777777655554467888899999999999999
Q ss_pred HhC-------CcEEeeCC-------CCCeEEEEEccCCC---CCHHHHHHHHHHCCceeeecc
Q psy13354 300 DQR-------GIRIVSGG-------TKSHIILVDLRNKK---ITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 300 ~~~-------g~~~~~~~-------~~~~~v~i~~~~~~---~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
.+. ++.++.+. ...+++.+.+.... .....+..++.++||.++.++
T Consensus 357 ~~l~~~~g~~~v~iyg~~~~~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~ 419 (805)
T PLN02724 357 RNLKHGNGAPVCVLYGNHTFKLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGC 419 (805)
T ss_pred HhccCCCCCeEEEEcCCCCCCCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeecc
Confidence 886 35555322 12356666665422 234557778888899998754
No 295
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.66 E-value=1.6e-15 Score=159.68 Aligned_cols=207 Identities=23% Similarity=0.287 Sum_probs=155.3
Q ss_pred hccCCCCccccccchhhHHHHHH---HHHc-----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLIN---ALDK-----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~---~l~~-----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
...+.-+|+|+|||+.+++..+- -+++ ..-|..+|||||||||||.+|+++|++...
T Consensus 113 e~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kv--------------- 177 (368)
T COG1223 113 EIISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKV--------------- 177 (368)
T ss_pred hhhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCC---------------
Confidence 33556689999999999865433 3433 245678999999999999999999998862
Q ss_pred CCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC------------HHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT------------HHAF 516 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~------------~~~~ 516 (1342)
.++.++++.. ++...++++.+.+... .+-||+|||.|.+. .+..
T Consensus 178 --------------p~l~vkat~liGehVGdgar~Ihely~rA~~~----aPcivFiDE~DAiaLdRryQelRGDVsEiV 239 (368)
T COG1223 178 --------------PLLLVKATELIGEHVGDGARRIHELYERARKA----APCIVFIDELDAIALDRRYQELRGDVSEIV 239 (368)
T ss_pred --------------ceEEechHHHHHHHhhhHHHHHHHHHHHHHhc----CCeEEEehhhhhhhhhhhHHHhcccHHHHH
Confidence 3566665432 2334566666665544 34599999999763 2468
Q ss_pred HHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCC-
Q psy13354 517 NAMLKTLEEP--PKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQG- 592 (1342)
Q Consensus 517 ~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g- 592 (1342)
|+||.-|+.. ...+|.|.+||+++-++++++||+ ..++|.-|+.++...++...+++..+.++-. +++++..++|
T Consensus 240 NALLTelDgi~eneGVvtIaaTN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~-~~~~~~~t~g~ 318 (368)
T COG1223 240 NALLTELDGIKENEGVVTIAATNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPVDAD-LRYLAAKTKGM 318 (368)
T ss_pred HHHHHhccCcccCCceEEEeecCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCccccC-HHHHHHHhCCC
Confidence 9999888753 467999999999999999999999 8899999999999999999999988887776 8888888766
Q ss_pred cHHHHHHHH-----HHHHhhcCCCCCHHHHHHHhcc
Q psy13354 593 SMRDALSLT-----DQAINYSSEKITLNSMQEMLSI 623 (1342)
Q Consensus 593 ~lr~a~~~L-----~kl~~~~~~~It~e~V~~~v~~ 623 (1342)
+-|++..-+ .+++.-....|+.+|++.++..
T Consensus 319 SgRdikekvlK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 319 SGRDIKEKVLKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred CchhHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 666665333 3333333455888888777643
No 296
>PRK08637 hypothetical protein; Provisional
Probab=99.65 E-value=1.4e-14 Score=174.55 Aligned_cols=286 Identities=11% Similarity=0.053 Sum_probs=176.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHhC-CC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHh-hhCCc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFN-AE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMML-NMSGK 138 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g-~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~-~~~g~ 138 (1342)
|+...+..++++++.+++.+..+ .. +.+++++|+++|+..++.++++|||+|++.++.++.+. ..+ ...|.
T Consensus 40 Y~~~~G~~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l~~~gd~Vlv~~P~y~~~~---~~~~~~~g~ 116 (388)
T PRK08637 40 YAPPQGIPELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLFVDQGDTVLLPDHNWGNYK---LTFNTRRGA 116 (388)
T ss_pred CCCCCCCHHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHhcCCCCEEEEcCCCCccHH---HHHHHhcCC
Confidence 44556667888877666655432 11 23455657888999999999999999998776655443 222 23566
Q ss_pred eeEEEEecCC-CCCCCCHHHHHHHHH---hcCCeEEEEcCCCCC-----cccCHHHHHHHHHH-----cCCEEEEEcccc
Q psy13354 139 WFNSICYGLN-KKEKIDYKKVEYLAK---KNKPKLIIAGASAYS-----QYIDFERFYHIAKN-----INSYFMVDMAHY 204 (1342)
Q Consensus 139 ~~~~v~~~~~-~~~~id~e~Le~~i~---~~~~~liv~~~s~~~-----~~~~l~~I~~la~~-----~gi~LIvDea~~ 204 (1342)
++++++.. +++.+|++++++.++ +....++++++++|| +...+++|+++|++ |+++||+||+|.
T Consensus 117 --~vv~v~~~~~~~~~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~s~~~~~~l~~~~~~~~~~~~~~~iI~De~Y~ 194 (388)
T PRK08637 117 --EIVTYPIFDEDGGFDTDALKEALQAAYNKGKVIVILNFPNNPTGYTPTEKEATAIVEAIKELADAGTKVVAVVDDAYF 194 (388)
T ss_pred --EEEEecccCCCCcCCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCCHHHHHHHHHHHHHHHhcCCcEEEEecccch
Confidence 45555552 445689999999887 234456767666777 33368888888875 899999999987
Q ss_pred hhhhhcCCCCCCC----C---CC-cEEEecCCccCCCCCe---eEEEEe------chhHHHHhhcc---CCccccCCcHH
Q psy13354 205 AGLIAAGEYPNPV----P---FA-DFITSTTHKSLRGPRG---GFILMK------KKYKKIINSAV---FPGIQGGPLMH 264 (1342)
Q Consensus 205 ~g~~~~~~~~~~l----~---~~-Divv~S~sK~l~gp~G---G~iv~~------~~l~~~l~~~~---~~~~~~~~~~~ 264 (1342)
...+......+.+ + .. -+.++|+||.+ +.+| ||++.+ +++.+.+.... ......+.+..
T Consensus 195 ~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~-~~pGlRlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~~ 273 (388)
T PRK08637 195 GLFYEDSYKESLFAALANLHSNILAVKLDGATKEE-FVWGFRVGFITFGTKAGSSQTVKEALEKKVKGLIRSNISNGPHP 273 (388)
T ss_pred hcccCCccchhhHHHhhcccccceEEEeccccccC-CCcccceEEEEEccccCCcHHHHHHHHHHHHHHhhcccCCCCcH
Confidence 5544332221111 1 11 13346999988 5666 999864 46666664311 01112233344
Q ss_pred HHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 265 VIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 265 ~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
.+.++..++.+. ...+.+..+..+.++++.+.+.|.+. ++.+. ++.+++++|+.++. ..+.+++..+++++||
T Consensus 274 ~q~a~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~-~~~~g~~~~~~l~~-~~~~~l~~~l~~~~gv 351 (388)
T PRK08637 274 SQSAVLRALNSPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAY-PFNSGYFMCLKLKG-VDAEELRVHLLEKYGI 351 (388)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccc-cccceEEEEecCCh-HHHHHHHHHHhhhcce
Confidence 555554444221 11123444556777777777777664 35443 34678899999863 2345677777777899
Q ss_pred eeeeccCCCCCCCcccccccccccccccc
Q psy13354 340 ICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 340 ~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+.+. ..+++|++++....
T Consensus 352 ~~~~~----------~~~~iRi~~~~~~~ 370 (388)
T PRK08637 352 GTIAL----------NETDLRIAFSCVEE 370 (388)
T ss_pred EEEec----------cCCceEEEeecCCH
Confidence 87631 13469999987433
No 297
>PLN02263 serine decarboxylase
Probab=99.65 E-value=1.3e-13 Score=164.40 Aligned_cols=281 Identities=13% Similarity=0.071 Sum_probs=192.6
Q ss_pred hHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHHHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEE
Q psy13354 70 FIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC 144 (1342)
Q Consensus 70 ~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~ 144 (1342)
...++|..+.+++++++|.+. .-++++|||+||..++.+.-. +...++ .+..+|++..+++...|..+. .
T Consensus 130 ~s~~~E~~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~~~~vvy---~S~~aH~Sv~KAa~llgi~~~--~ 204 (470)
T PLN02263 130 HSRQFEVGVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVFPDGILY---ASRESHYSVFKAARMYRMECV--K 204 (470)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhcCCcEEE---EcCCccHHHHHHHHhcCCcce--E
Confidence 467999999999999999853 234455999999999887632 333455 334678888889899998544 4
Q ss_pred ecCCCCCCCCHHHHHHHHHhcC--CeEEEEcCCCCC--cccCHHHHHHHHHHcCC-----EEEEEcccchhhhhcCCCCC
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNK--PKLIIAGASAYS--QYIDFERFYHIAKNINS-----YFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~--~~liv~~~s~~~--~~~~l~~I~~la~~~gi-----~LIvDea~~~g~~~~~~~~~ 215 (1342)
++.++++++|+++|++.+.+.+ |.+|+.+.+.++ ...|+++|+++|+++|+ |++||+|++...........
T Consensus 205 Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDpi~eIa~i~~~~g~~~~~iwlHVDAA~GG~~lPf~~~~~ 284 (470)
T PLN02263 205 VDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDDLDLVIKTLEECGFSQDRFYIHCDGALFGLMMPFVKRAP 284 (470)
T ss_pred eccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCCHHHHHHHHHHcCCccCCeeEEEeccchhhHhhhccccc
Confidence 5667889999999999997655 666666554444 66699999999999997 99999998754442222222
Q ss_pred CCCC---CcEEEecCCccCCCCCe-eEEEEechhHHHHhhc------cCCccccCCcHHHHHHHHHHHHHhccchHHHHH
Q psy13354 216 PVPF---ADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQ 285 (1342)
Q Consensus 216 ~l~~---~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~ 285 (1342)
.++. +|.++.++|||+..|.+ |+++.++...+.+... ......++-.......++..+..+..+++.+..
T Consensus 285 ~~df~~~vDSIsvD~HK~l~~P~~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~lW~~L~~~G~~G~~~~i 364 (470)
T PLN02263 285 KVTFKKPIGSVSVSGHKFVGCPMPCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIFLWYTLNRKGYRGFQKEV 364 (470)
T ss_pred ccCCCcCccEEEECCccccCCCcCEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHHHHHHHHHhCHHHHHHHH
Confidence 2332 79999999999988988 9888887554333211 111122222222356667777777777899999
Q ss_pred HHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 286 KQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 286 ~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++..++++++.+.|.+.|+.....+ ....+.+..+. .+. .. +|..+... + ..+|+++.+
T Consensus 365 ~~~~~~A~~l~~~l~~~g~~~~~~p-~s~~V~f~~p~----~~~----~~-~gW~L~~~-----~------~~~Hivvmp 423 (470)
T PLN02263 365 QKCLRNAHYLKDRLREAGISAMLNE-LSSTVVFERPK----DEE----FV-RRWQLACQ-----G------NIAHVVVMP 423 (470)
T ss_pred HHHHHHHHHHHHHHHhCCCeEEeCC-CceEEEEecCc----hHH----hh-cceEEccC-----C------CcEEEEEcC
Confidence 9999999999999999998876643 34455554321 111 12 35554431 1 248898888
Q ss_pred ccccccchhhH
Q psy13354 366 ITTRGFSELEI 376 (1342)
Q Consensus 366 ~~t~~~~e~d~ 376 (1342)
..+.+..++-+
T Consensus 424 hv~~~~id~fi 434 (470)
T PLN02263 424 SVTIEKLDYFL 434 (470)
T ss_pred CCCHHHHHHHH
Confidence 76654433333
No 298
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=99.65 E-value=1.9e-14 Score=172.02 Aligned_cols=248 Identities=19% Similarity=0.224 Sum_probs=172.4
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...++|+ .+++++|.+.+++++ ||++|+..++.+++++||+|++....|++..... ......|. ++..+
T Consensus 38 ~~p~~~~le~----~la~l~g~~~a~~~~-sG~~Ai~~~l~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v 110 (369)
T cd00614 38 GNPTVDALEK----KLAALEGGEAALAFS-SGMAAISTVLLALLKAGDHVVASDDLYGGTYRLFERLLPKLGI--EVTFV 110 (369)
T ss_pred CChhHHHHHH----HHHHHHCCCCEEEEc-CHHHHHHHHHHHHcCCCCEEEECCCCcchHHHHHHHHHhhcCe--EEEEe
Confidence 4565666666 899999988888887 9999999999999999999998776665543322 22334555 44544
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.+ |++++++++++ ++++|++..++++ ...|+++|+++|++||++||+|++|+.+.. ..++. .+|+
T Consensus 111 ~~~-----d~~~l~~~i~~-~~~~v~~e~~~np~g~~~dl~~i~~la~~~g~~livD~t~~~~~~-----~~~~~~g~Di 179 (369)
T cd00614 111 DPD-----DPEALEAAIKP-ETKLVYVESPTNPTLKVVDIEAIAELAHEHGALLVVDNTFATPYL-----QRPLELGADI 179 (369)
T ss_pred CCC-----CHHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcchhc-----CChhhhCCcE
Confidence 554 68899998875 4567776655555 455999999999999999999999887644 12333 3799
Q ss_pred EEecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|++|+++|+. ||++++++ ++++.++..... +++..++..+++. ...++ .+..+.++..+++.++.+.
T Consensus 180 vv~S~tK~l~g~~~~~gG~v~~~~~~l~~~l~~~~~~--~g~~~~p~~a~~~---l~~l~-tl~~r~~~~~~na~~la~~ 253 (369)
T cd00614 180 VVHSATKYIGGHSDVIAGVVVGSGEALIQRLRFLRLA--LGTILSPFDAWLL---LRGLK-TLPLRMERHSENALKVAEF 253 (369)
T ss_pred EEeccceeccCCCCceEEEEEeCcHHHHHHHHHHHHh--hCCCCCHHHHHHH---HcCCC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999996543 69999987 787777654322 2333344444332 22232 4556788899999999999
Q ss_pred HHhCC-cEEeeCC----------------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 299 LDQRG-IRIVSGG----------------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 299 L~~~g-~~~~~~~----------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
|.+.+ +..+..| ..+.++.+.+++ +.+.+..+++.-.+..
T Consensus 254 L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~---~~~~~~~f~~~l~~~~ 310 (369)
T cd00614 254 LEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKG---GLEAAKKFLNALKLFS 310 (369)
T ss_pred HHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCC---CHHHHHHHHHcCCcce
Confidence 99865 3322211 235677787763 3456677777656553
No 299
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=99.64 E-value=1.8e-14 Score=170.91 Aligned_cols=314 Identities=12% Similarity=0.082 Sum_probs=205.8
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~a 105 (1342)
.+.+.+++..+|+.|++|+...+.+....+.+............++.+.+++.++++++.+ ++++++++|+.|++++
T Consensus 4 ~~l~~pGP~~~p~~V~~a~~~~~~~~~~~~~g~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~ 83 (360)
T PRK05355 4 VYNFSAGPAMLPEEVLEQAQQELLDWNGSGMSVMEISHRSKEFEAVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMV 83 (360)
T ss_pred eeeccCCCCCCCHHHHHHHHHHhhccccCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHH
Confidence 3568899999999999999887642111111111111223334577777999999999963 4677778999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHH-HHHhcCCeEEEE-cCCCCC-ccc-
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEY-LAKKNKPKLIIA-GASAYS-QYI- 181 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~-~i~~~~~~liv~-~~s~~~-~~~- 181 (1342)
+..++.+||++++......++- .....+..|.. ..+..+. ..+..+..++++ .+++ .+++|.+ ++.+.+ ...
T Consensus 84 ~~nl~~~g~~~l~i~~G~fg~r-~~~~a~~~g~~-~~~~~~~-~~g~~~~~~~~~~~l~~-~~~~V~~th~eTstGv~~~ 159 (360)
T PRK05355 84 PMNLLGGGKKADYVDTGSWSKK-AIKEAKKYGEV-NVAASSE-DDGFTYIPPLDEWQLSD-DAAYVHYTSNETIDGTEFH 159 (360)
T ss_pred HHhcCCCCCeEEEEECCHHHHH-HHHHHHHhCCc-eEEeccc-ccCCCCCCChhhccCCC-CCCEEEEccCCCcceEecC
Confidence 9999999999987553222221 13445666753 4443331 133444444444 5554 3455444 433333 332
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc------
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA------ 252 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~------ 252 (1342)
++++| +|+++++|+++++|.. +++ ..|++++|.+|++ ||+| |+++.+++..+.+...
T Consensus 160 ~i~~i------~g~l~vVDavss~g~~-------~idv~~~d~~~~ssqK~l-gP~Glg~l~~s~~~l~~~~~~~~~~~~ 225 (360)
T PRK05355 160 ELPDT------GDVPLVADMSSDILSR-------PIDVSKFGLIYAGAQKNI-GPAGLTIVIVREDLLGRALPSIPSMLD 225 (360)
T ss_pred ccccc------CCCcEEEEcCccccCc-------cCCHHHccEEEEeccccc-cCCceEEEEECHHHHhhcccCCChHHH
Confidence 56655 8999999999998866 332 2479999999999 7999 9999999877665441
Q ss_pred -----cCCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcE-EeeC-CCCC-eEEEEEccCC
Q psy13354 253 -----VFPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIR-IVSG-GTKS-HIILVDLRNK 323 (1342)
Q Consensus 253 -----~~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~-~~~~-~~~~-~~v~i~~~~~ 323 (1342)
......++|+.+...++..++..+.++ +++.+.++..+.++++++.|++.|+. .+.. .... .++.+.+++.
T Consensus 226 ~~~~~~~~~~~~Tp~~~~i~aL~~aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~v~sf~~~~~ 305 (360)
T PRK05355 226 YKTHADNDSMYNTPPTFAIYLAGLVFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFYRNPVAPEDRSRMNVPFTLADE 305 (360)
T ss_pred HHHHHhcCCccCCCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCChhhcCCcEEEEEcCCh
Confidence 111234788888899999888888777 79999999999999999999998853 2111 1122 3466666654
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+..++...+ .+.|+.+.... .. .+.+|+|+..+++.
T Consensus 306 ~~~~~~~~~~-~~~Gi~~~~~~----~~----~g~vRiS~~~~nt~ 342 (360)
T PRK05355 306 ELDKKFLAEA-KAAGLVGLKGH----RS----VGGMRASIYNAMPL 342 (360)
T ss_pred HHHHHHHHHH-HHCCCcccCCC----Cc----cCcEEEECCCCCCH
Confidence 2223333444 45699873321 11 25699999888774
No 300
>PRK05968 hypothetical protein; Provisional
Probab=99.64 E-value=9.4e-15 Score=175.23 Aligned_cols=217 Identities=20% Similarity=0.176 Sum_probs=153.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++...++|+ .+++++|.+++++++ ||+.|+..++.++++|||+|+++...|++.+... ..+...|+.+ ..++
T Consensus 62 ~p~~~~le~----~lA~l~g~~~av~~~-sG~~Ai~~al~al~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~~v--~~vd 134 (389)
T PRK05968 62 NPTVRAFEE----MLAKLEGAEDARGFA-SGMAAISSTVLSFVEPGDRIVAVRHVYPDAFRLFETILKRMGVEV--DYVD 134 (389)
T ss_pred ChhHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCceE--EEeC
Confidence 444556666 999999999888887 9999999999999999999998887776544333 3445567644 4344
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++.+ + ++++|++.++.++ ...++++|+++|++||++||+|++|+.+.... +.. .+|++
T Consensus 135 ~~-----d~~~l~~~i-~-~tklV~ie~pt~~~~~~~dl~~i~~la~~~gi~vivD~a~a~~~~~~-----p~~~g~Div 202 (389)
T PRK05968 135 GR-----DEEAVAKAL-P-GAKLLYLESPTSWVFELQDVAALAALAKRHGVVTMIDNSWASPVFQR-----PITLGVDLV 202 (389)
T ss_pred CC-----CHHHHHHhc-c-cCCEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcchhccC-----chhcCCcEE
Confidence 33 889999887 3 3566666555444 44599999999999999999999987665322 222 36999
Q ss_pred EecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
+.|++|+++|+. ||++++++++++.++....++. ++..++..+++. ...+. .+..+.++..+++.++.+.|+
T Consensus 203 v~S~tK~l~g~~~~~gG~i~~~~~~~~~l~~~~~~~~-g~~~~~~~A~~~---l~~L~-tl~~r~~~~~~~a~~la~~L~ 277 (389)
T PRK05968 203 IHSASKYLGGHSDTVAGVVAGSKEHIARINAEAYPYL-GAKLSPFEAWLL---LRGLR-TLPLRMKAHEASALEIARRLK 277 (389)
T ss_pred EeeccccccCCCCeEEEEEEECHHHHHHHHHHHHHhC-CCCCChHHHHHH---HcccC-cHHHHHHHHHHHHHHHHHHHH
Confidence 999999997653 5999988888877765322222 223344444332 22333 556678888999999999998
Q ss_pred hC-CcEEee
Q psy13354 301 QR-GIRIVS 308 (1342)
Q Consensus 301 ~~-g~~~~~ 308 (1342)
+. ++..+.
T Consensus 278 ~~p~v~~v~ 286 (389)
T PRK05968 278 AHPVVERVC 286 (389)
T ss_pred hCCCccEEE
Confidence 85 454333
No 301
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.64 E-value=2.5e-14 Score=174.17 Aligned_cols=258 Identities=14% Similarity=0.134 Sum_probs=161.9
Q ss_pred hhHHHHHHhhccCCCCccccccchhhHHHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCC---C
Q psy13354 374 LEIIKVVLARKYRPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGN---G 446 (1342)
Q Consensus 374 ~d~~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~---~ 446 (1342)
.+....+|..-|.| +.|+|++..++.|...|. .....++++++|+||||||++++.+.+.|........ .
T Consensus 741 ~~~A~rvL~~DYVP---D~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f 817 (1164)
T PTZ00112 741 TDKAIRMMQLDVVP---KYLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSF 817 (1164)
T ss_pred HHHHHHHcCcccCC---CcCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCc
Confidence 33445567777888 679999888877766653 3333456679999999999999999998852110000 0
Q ss_pred CcccCCCCCCcchhhhccCCCccEEEEccCCC-cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC
Q psy13354 447 GITSQPCGKCSVCVKIDNGCFMDYIEMDAAST-RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE 525 (1342)
Q Consensus 447 ~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~-~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~ 525 (1342)
.+.+.+|........+.....-.+........ ...+.+..++..... ......||+|||+|.|.....+.|+.+++.
T Consensus 818 ~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k--~~r~v~IIILDEID~L~kK~QDVLYnLFR~ 895 (1164)
T PTZ00112 818 NVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKK--DNRNVSILIIDEIDYLITKTQKVLFTLFDW 895 (1164)
T ss_pred eEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhc--ccccceEEEeehHhhhCccHHHHHHHHHHH
Confidence 11123332211111100000000000000000 001122222222211 112234899999999976555667666553
Q ss_pred ---CCCcEEEEEEeCCC---CCChHHHhccEE--EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH---hcCCcH
Q psy13354 526 ---PPKYIKFILATTEP---QKIPITVLSRCI--QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT---GAQGSM 594 (1342)
Q Consensus 526 ---p~~~~vlIl~t~~~---~kl~~~L~sR~~--~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~---~~~g~l 594 (1342)
....+++|+++|.. ..+.+.+++|+. .+.|+|++.+++.++|..++......+++++++++|+ ..+||+
T Consensus 896 ~~~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDA 975 (1164)
T PTZ00112 896 PTKINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDI 975 (1164)
T ss_pred hhccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHH
Confidence 34567788888763 466789999983 5899999999999999999987655699999999998 668999
Q ss_pred HHHHHHHHHHHhhcC-CCCCHHHHHHHhccCcHHHHHHHHHHH
Q psy13354 595 RDALSLTDQAINYSS-EKITLNSMQEMLSIIDQKYLIQILDAL 636 (1342)
Q Consensus 595 r~a~~~L~kl~~~~~-~~It~e~V~~~v~~~~~~~if~l~dal 636 (1342)
|.|+++|..+..... ..|+.++|.+++.......+.+.+..+
T Consensus 976 RKALDILRrAgEikegskVT~eHVrkAleeiE~srI~e~IktL 1018 (1164)
T PTZ00112 976 RKALQICRKAFENKRGQKIVPRDITEATNQLFDSPLTNAINYL 1018 (1164)
T ss_pred HHHHHHHHHHHhhcCCCccCHHHHHHHHHHHHhhhHHHHHHcC
Confidence 999999999887653 359999999888655444444444333
No 302
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=99.63 E-value=1.9e-14 Score=169.99 Aligned_cols=278 Identities=14% Similarity=0.100 Sum_probs=173.5
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~ 103 (1342)
..+.+.+|+|+++++ ...+ ..+ +.| +. . . ..+++.+++++|.. +.+++++|+++++.
T Consensus 25 ~~i~ls~Nenp~~~~~~~~~~--~~~-~~Y----p~-------~---~--~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~ 85 (339)
T PRK06959 25 AWLDLSTGINPHGYPVPPVPA--DAW-RRL----PE-------D---D--DGLAACAARYYGAPDAAHVLPVAGSQAAIR 85 (339)
T ss_pred hhceeccCCCCCCCCCCCCCH--HHH-HhC----CC-------c---h--HHHHHHHHHHhCCCCcccEEECcCHHHHHH
Confidence 458899999997765 2211 222 222 21 1 1 23455899999985 45666646667877
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.+. .++.+|| |++..+ ++..+.......|. ++++++.++ +.+. + ..+++++++|+|| ...
T Consensus 86 ~l~-~~~~~g~-v~v~~P---~y~~y~~~~~~~g~--~~~~v~~~~------~~~~----~-~~~~v~l~nPnNPTG~~~ 147 (339)
T PRK06959 86 ALP-ALLPRGR-VGIAPL---AYSEYAPAFARHGH--RVVPLDEAA------DTLP----A-ALTHLIVVNPNNPTAERL 147 (339)
T ss_pred HHH-HhcCCCe-EEEcCC---CcHHHHHHHHHCCC--EEEeecccc------hhcc----c-cCCEEEEeCCCCCCCCCC
Confidence 554 4578887 665554 44444445566676 555555442 2221 1 2245555566666 222
Q ss_pred ---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 182 ---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 182 ---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
.+++|++.|.+++.++|+||+|........ .....+. --++++||||.| |.+| ||+++++++++.+.....
T Consensus 148 s~~~l~~l~~~~~~~~~~vI~DEay~~~~~~~s-~~~~~~~~~vi~l~SfSK~~-gl~GlRiGy~v~~~~li~~l~~~~~ 225 (339)
T PRK06959 148 PAARLLRWHAQLAARGGTLIVDEAFADTLPAAS-LAAHTDRPGLVVLRSVGKFF-GLAGVRAGFVLAAPALLAALRDALG 225 (339)
T ss_pred CHHHHHHHHHHHHHcCCEEEEECCCccCCCccc-chhccCCCCEEEEecChhhc-CCcchheEEEecCHHHHHHHHHhcC
Confidence 455666667788999999999875432111 0011111 137889999999 7777 999999999999987655
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++..+ .+.+.++..++.+ .++.+..++.+.++++++.+.|++.|+++. ...+++|++++ .+.++...++
T Consensus 226 ~~~vs---~~~q~a~~~~L~~--~~~~~~~~~~~~~~r~~l~~~L~~~g~~~~---~~~~f~~~~~~---~~~~l~~~l~ 294 (339)
T PRK06959 226 AWTVS---GPARHAVRAAFAD--AAWQAAMRERLAADGARLAALLRAHGFAVH---ATPLFSWTDDP---RAAALHAALA 294 (339)
T ss_pred CCCCc---HHHHHHHHHHhCc--HHHHHHHHHHHHHHHHHHHHHHHHCCCCcc---CcceEEEEeCC---CHHHHHHHHH
Confidence 54432 3455555544432 236677789999999999999999988763 24578888865 2345555555
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++||.+..+ +. .+++|++++.
T Consensus 295 -~~GI~vr~~---~~------~~~lRisi~~ 315 (339)
T PRK06959 295 -RRGIWTRYF---AP------PPSVRFGLPA 315 (339)
T ss_pred -hCCeEEEEC---CC------CCeEEEECCC
Confidence 559999753 11 2469999853
No 303
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.63 E-value=3.9e-14 Score=168.58 Aligned_cols=247 Identities=17% Similarity=0.163 Sum_probs=166.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++++.|.+++++++ ||++|+..++.++++|||+|++++..+++...... .+...|+.+.. +
T Consensus 48 gnPt~~~lE~----~lA~l~g~~~~~~~~-sG~~Ai~~al~all~~GD~Vl~~~~~y~~t~~~~~~~~~~~gi~v~~--~ 120 (377)
T TIGR01324 48 GTLTHFALQD----AMCELEGGAGCYLYP-SGLAAVTNSILAFVKAGDHVLMVDSAYEPTRYFCDIVLKRMGVDITY--Y 120 (377)
T ss_pred CCccHHHHHH----HHHHHhCCCcEEEEC-cHHHHHHHHHHHhcCCCCEEEEcCCCcHHHHHHHHHHHHhcCcEEEE--E
Confidence 4566677777 889999998888877 99999999999999999999987766654332222 23445664433 3
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.+ +.+.+++++++. +++|++..++++ ...|+++|+++|+++|+++|+|++|+.|.... +++ .+|+
T Consensus 121 d~~-----~~e~l~~~i~~~-tklV~lesp~Np~g~~~dl~~I~~la~~~g~~livD~t~a~g~~~~-----pl~~gaDi 189 (377)
T TIGR01324 121 DPL-----IGEDIATLIQPN-TKVLFLEAPSSITFEIQDIPAIAKAARNPGIVIMIDNTWAAGLLFK-----PLEHGVDI 189 (377)
T ss_pred CCC-----CHHHHHHhcCCC-ceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCccccccC-----ccccCceE
Confidence 332 237788887764 556665554445 45599999999999999999999998876532 333 4799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++|++|+++|+. ||+++++++..+.+... ...+|....|..+..... .++ .+..+.++..+++..+.+.|
T Consensus 190 vv~S~tK~l~G~~d~~gG~v~~~~~~~~~l~~~--~~~~G~~l~p~~a~~~~r---gl~-tl~~R~~~~~~~a~~la~~L 263 (377)
T TIGR01324 190 SIQAGTKYLVGHSDIMIGTVVANARTWDQLREH--SYLMGQMVDADDAYTTLR---GLR-TLGVRLKQHQESSLAIAKWL 263 (377)
T ss_pred EEecCceeccCCCCceEEEEEeCHHHHHHHHHH--HHHhCCCCCHHHHHHHHh---hhh-hHHHHHHHHHHHHHHHHHHH
Confidence 9999999997654 49999988777766542 234455545544433222 222 44456788899999999999
Q ss_pred HhCC-c-EEeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 300 DQRG-I-RIVSGG---------------TKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 300 ~~~g-~-~~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
++.. + ++..+. ..+.++.+.+++. ..+.+.++++.-.+
T Consensus 264 ~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~--~~~~~~~~~~~l~~ 318 (377)
T TIGR01324 264 SEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRL--TQKQVHAFLDHLQL 318 (377)
T ss_pred HhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCC--CHHHHHHHHHhCCc
Confidence 8853 2 222211 2245677777532 23445566665443
No 304
>KOG1368|consensus
Probab=99.63 E-value=1.3e-14 Score=155.26 Aligned_cols=298 Identities=19% Similarity=0.187 Sum_probs=202.6
Q ss_pred HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc-CCCCEEEEeec
Q psy13354 43 VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL-NPGDTIMGMSL 121 (1342)
Q Consensus 43 v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~-~pGD~Vlv~~~ 121 (1342)
.+++|.++.. ++..|+..+....||+ ..++++|.+...+++ |||.+|..+++.-+ +||.+|++-+.
T Consensus 38 Mr~am~eA~v--------gDdVyGeD~tt~rLE~----~vA~l~GKEAgLFv~-SGTmgNllaIm~Hc~~rg~eii~gd~ 104 (384)
T KOG1368|consen 38 MRRAMAEASV--------GDDVYGEDPTTNRLEQ----RVAELFGKEAGLFVP-SGTMGNLLAIMVHCHQRGSEIIVGDR 104 (384)
T ss_pred HHHHHhhccc--------CcccccCCccHHHHHH----HHHHHhCccceeeec-ccccccHHHHHHHhcCCCceEEeccc
Confidence 6666665542 3445666777778888 899999988777777 99999999999876 49999997554
Q ss_pred cCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-------CeEEEEcCCCC--C----cccCHHHHHH
Q psy13354 122 QEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-------PKLIIAGASAY--S----QYIDFERFYH 188 (1342)
Q Consensus 122 ~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-------~~liv~~~s~~--~----~~~~l~~I~~ 188 (1342)
.|-..+-.+....+.|. .+.++...+++.+|++++++.+...+ .++|.+.++.+ + +...++++.+
T Consensus 105 ~HI~~~E~gg~s~l~gv--~~~tv~~e~dgtm~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v~~ 182 (384)
T KOG1368|consen 105 AHIHRYEQGGISQLAGV--HVRTVKNENDGTMDLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRVKA 182 (384)
T ss_pred hheeehhccChhhhccc--eeEeeeeCCCCeeeHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHHHH
Confidence 44333333333344455 55666667889999999999998432 36777766554 3 2235778899
Q ss_pred HHHHcCCEEEEEcccchhhhhc-CCCCC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHHHH
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAA-GEYPN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVI 266 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~-~~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~ 266 (1342)
+|++||+.|++|+|..+.+-.. +.... ....+|.+..-+||.+++|-|.++++++++++..+..+.....|.-.+...
T Consensus 183 lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgAPVGSViVG~k~FI~kA~~~RKalGGGmRQsGvL 262 (384)
T KOG1368|consen 183 LAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGAPVGSVIVGSKDFIDKARHFRKALGGGMRQSGVL 262 (384)
T ss_pred HHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCCCcccEEEccHHHHHHHHHHHHHhcCchhHHHHH
Confidence 9999999999999865432211 11000 011258888889999999999999999999887665433333222222233
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeecc
Q psy13354 267 AAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 267 ~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
+|+++. .+.+ .+. ....-.+.+..+.+.+...+ +++..+...++++.+.+.....+.+.+...++++||.+.+.
T Consensus 263 aaaaLv--al~~-~~~-~L~~dHk~A~~lAe~~~~~~~i~v~v~a~etNiv~~~l~q~~~~~~~l~~~~~k~gi~lm~~- 337 (384)
T KOG1368|consen 263 AAAALV--ALDE-NVP-LLRADHKRAKELAEYINTPEEIRVEVPAVETNIVNMVLCQARLTAEELCKFLEKNGILLMGG- 337 (384)
T ss_pred HHHHHH--Hhhc-chH-HHHHHHHHHHHHHHHhccccceeeecchhhcceeeeecccccCCHHHHHHHHHHCCeEEeec-
Confidence 333322 2222 333 34445666777888887765 77766557788999888888888888888888999998743
Q ss_pred CCCCCCCccccccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
. ..++|+.+...-+.
T Consensus 338 ---~------s~r~Rivlh~Qvt~ 352 (384)
T KOG1368|consen 338 ---A------SRRIRIVLHHQVTD 352 (384)
T ss_pred ---c------ccceEEEEEEecCH
Confidence 1 24589998887654
No 305
>TIGR01328 met_gam_lyase methionine gamma-lyase. This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.
Probab=99.63 E-value=3.8e-14 Score=170.01 Aligned_cols=249 Identities=21% Similarity=0.225 Sum_probs=169.8
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .+++++|.+.+++++ ||+.|+..++.+++.+||+|++....|++.+... ..+...|+ .+..+
T Consensus 57 ~~p~~~~le~----~lA~l~g~~~av~~~-sG~~Ai~~~l~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~~~~v 129 (391)
T TIGR01328 57 GNPTVSNLEG----RIAFLEGTEAAVATS-SGMGAIAATLLTILKAGDHLISDECLYGCTFALLEHALTKFGI--QVDFI 129 (391)
T ss_pred CCchHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEecCcchHHHHHHHHHHhcCCe--EEEEE
Confidence 3455566666 999999999887777 9999999999999999999998876666544333 33445565 44444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.+ |++++++.+++ ++++|+++.+++| ...|+++|+++|+++|+++|+|++|+.+.... ++. .+|+
T Consensus 130 d~~-----d~e~l~~~i~~-~tklV~le~p~Np~G~v~dl~~I~~la~~~gi~livD~a~a~~~~~~-----~~~~g~Di 198 (391)
T TIGR01328 130 NMA-----IPEEVKAHIKD-NTKIVYFETPANPTMKLIDMERVCRDAHSQGVKVIVDNTFATPMLTN-----PVALGVDV 198 (391)
T ss_pred CCC-----CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCchhccCC-----chhcCCCE
Confidence 554 78999998876 4566666666555 45599999999999999999999998654421 222 4799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++|++|+++++. ||++++++++++.++........++..++..+++... .++ .+..+.++..+++.++.+.|
T Consensus 199 vv~S~sK~lgg~g~~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~---~L~-tl~~r~~~~~~na~~la~~L 274 (391)
T TIGR01328 199 VVHSATKYIGGHGDVVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILR---GLK-TLNIRMKRHSENAMKVAEYL 274 (391)
T ss_pred EEccccccccCCCCceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHh---CcC-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999996543 5899999988887764322222233344444443332 222 44566788899999999999
Q ss_pred HhCC-cEEee-CC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 300 DQRG-IRIVS-GG---------------TKSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 300 ~~~g-~~~~~-~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
++.. +..+. ++ ..+.++.+.+++ +.+.+.++++.-.+.
T Consensus 275 ~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~---~~~~~~~f~~~l~~~ 329 (391)
T TIGR01328 275 KSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKG---GFAGAKKLLNNLKLI 329 (391)
T ss_pred HhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCC---CHHHHHHHHHhCCcc
Confidence 8853 33222 11 113366677653 235566777665544
No 306
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.62 E-value=5e-14 Score=181.26 Aligned_cols=285 Identities=17% Similarity=0.165 Sum_probs=191.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHH---HHHHHHHHHccCC-CC----EEEEeeccCCccchhhHHhhhCCce
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGS---QANQAVFFSVLNP-GD----TIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs---~A~~~al~al~~p-GD----~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
..++.++...+++++++++|.+.+++.+++|+ .|+..++.++..+ || +|+++...|++....+.. .|.
T Consensus 563 ~~g~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~~~~Gd~~r~~vli~~~aH~sn~a~a~~---~G~- 638 (993)
T PLN02414 563 AQGYQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYHLSRGDHHRNVCIIPVSAHGTNPASAAM---CGM- 638 (993)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHHhccCCCCCCEEEeCCCcCccCHHHHHH---CCC-
Confidence 56677888889999999999987777775554 4888888888766 88 899888888877655533 455
Q ss_pred eEEEEecCCCCCCCCHHHHHHHHHhcC--CeE-EEEcCCCCCccc-CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC
Q psy13354 140 FNSICYGLNKKEKIDYKKVEYLAKKNK--PKL-IIAGASAYSQYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 140 ~~~v~~~~~~~~~id~e~Le~~i~~~~--~~l-iv~~~s~~~~~~-~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
+++.++.+++|.+|+++|++++++++ .++ ++.++++..... |+++|+++||++|+++++|++|..+.... ..
T Consensus 639 -~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~I~eI~~iah~~Galv~vDgAq~~a~~~l---~~ 714 (993)
T PLN02414 639 -KIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEGIDEICDIIHDNGGQVYMDGANMNAQVGL---TS 714 (993)
T ss_pred -EEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccchHHHHHHHHHHcCCEEEEEecCHHhccCc---CC
Confidence 66666777889999999999998633 344 445556665444 79999999999999999999998765321 11
Q ss_pred CCC-CCcEEEecCCccCCCCCe------eEEEEechhHHHHhhcc-----------CCccccCC---c--H-HHHHHHHH
Q psy13354 216 PVP-FADFITSTTHKSLRGPRG------GFILMKKKYKKIINSAV-----------FPGIQGGP---L--M-HVIAAKAV 271 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~~~~-----------~~~~~~~~---~--~-~~~~Aaa~ 271 (1342)
+.+ .+|++++|.||+|++|.| |++++++.+...+-... .....++. . + ....++..
T Consensus 715 p~~~GaD~~~~s~HK~f~~P~G~GGPg~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt~~~a~~g~al~l~~A~~ 794 (993)
T PLN02414 715 PGFIGADVCHLNLHKTFCIPHGGGGPGMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGTISAAPWGSALILPISYT 794 (993)
T ss_pred ccccCCCEEEecCCccCCcCcccCCCCeeeEEEchhhcccCCCCccccCCCcccccCCCCcCCccchhhhhHHHHHHHHH
Confidence 222 389999999999976653 89999887665543210 00111220 1 1 11122222
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-C--CeEEEEEccCC-----CCCHHHHHHHHHHCCceeee
Q psy13354 272 AFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT-K--SHIILVDLRNK-----KITGKIAESILESANIICNK 343 (1342)
Q Consensus 272 al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~--~~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~ 343 (1342)
-+..+..+++++..++...+++|+.+.|.+ ++++....+ + .|-+.+.++.. ....++...|+ ++||....
T Consensus 795 yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~-~~~~~~~~~~~~~~hEfv~~~~~l~~~~g~~~~di~krL~-d~Gihapt 872 (993)
T PLN02414 795 YIAMMGSEGLTDASKIAILNANYMAKRLEG-HYPVLFRGKNGTCAHEFIIDLRPFKNTAGIEPEDVAKRLM-DYGFHAPT 872 (993)
T ss_pred HHHHHCHhHHHHHHHHHHHHHHHHHHHHHh-hCCccccCCCCCeeeeEEEeccccccccCCCHHHHHHHHH-HcCcEEee
Confidence 233444567877888999999999999987 444433211 1 12334444421 12356777777 67999877
Q ss_pred ccCCCCCCCccccccccccccccccc
Q psy13354 344 NSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 344 ~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
..+|. .+.+|++.+...+.
T Consensus 873 ~~~pv-------~~~lmiepTE~~sk 891 (993)
T PLN02414 873 MSWPV-------PGTLMIEPTESESK 891 (993)
T ss_pred ecccc-------CCEEEEEeeeeCCH
Confidence 55442 24699988887664
No 307
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=99.62 E-value=1.6e-13 Score=168.48 Aligned_cols=300 Identities=17% Similarity=0.205 Sum_probs=190.7
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCC--------------CceEecCCHHHHHHHHHHHcc----C----------------
Q psy13354 66 GGCKFIDLIEKIAINRLKKIFNAE--------------AANVQPHSGSQANQAVFFSVL----N---------------- 111 (1342)
Q Consensus 66 ~~~~~~~~Le~~~~~~la~~~g~~--------------~~vi~~~sGs~A~~~al~al~----~---------------- 111 (1342)
...+...++|+.+.+|++++++.. ..-++++|||.|+..++.+.- .
T Consensus 122 ~~spa~t~lE~~v~~wl~~l~~~~~~~~~~~~~~~~~~~~G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~ 201 (522)
T TIGR03799 122 ETSKAFTPLERQVLGMMHHLVYGQDDDFYRKWMHSADHSLGAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAA 201 (522)
T ss_pred ecCcchHHHHHHHHHHHHHHhccCcccchhhcccCCCCCCeEEcCchHHHHHHHHHHHHHHhccccccccccccccchhh
Confidence 456677799999999999998521 123445599999998876641 1
Q ss_pred ------CCCEEEEeeccCCccchhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHh----cC-CeEEEEcCC--CC
Q psy13354 112 ------PGDTIMGMSLQEGGHLTHGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKK----NK-PKLIIAGAS--AY 177 (1342)
Q Consensus 112 ------pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~----~~-~~liv~~~s--~~ 177 (1342)
++..|+++. .+|.+........|.+. +++.++.++++.+|+++|++.+.+ .+ +.+|+.+.+ ..
T Consensus 202 ~~~~~~~~~~v~~S~---~~H~S~~kaa~~lglg~~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~t 278 (522)
T TIGR03799 202 LKHYGYDGLAILVSE---RGHYSLGKAADVLGIGRDNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTET 278 (522)
T ss_pred hhhccCCceEEEECC---CchHHHHHHHHHcCCCcccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCC
Confidence 123455444 55666667767777632 345567788899999999998863 22 233332222 23
Q ss_pred CcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhc
Q psy13354 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSA 252 (1342)
Q Consensus 178 ~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~ 252 (1342)
+...|+++|+++|+++|+|+++|+||+.+......+. .-+..+|+++.++|||+.+|.| |+++.++ ...+.+...
T Consensus 279 GaiDpl~eIa~i~~~~g~~lHVDaA~gg~~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~g~G~llvr~~~~~~~~~~~ 358 (522)
T TIGR03799 279 GNIDPLDEMADIAQELGCHFHVDAAWGGATLLSNTYRHLLKGIERADSVTIDAHKQLYVPMGAGMVLFKDPALMSAIEHH 358 (522)
T ss_pred CCcCCHHHHHHHHHHcCCeEEEEchhhhHHHhCHHHHHHhcCchhCCEEEEChhhcCCcCcccEEEEEeCHHHHHHhccC
Confidence 3667999999999999999999999986554222111 1123579999999999989999 9888765 444433321
Q ss_pred c-----------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEc
Q psy13354 253 V-----------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 253 ~-----------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~ 320 (1342)
. ..+...++.......+..++..+...+++.+.++..++++++.+.|.+. +++++.++ ..+++.+++
T Consensus 359 ~~Yl~~~~~~d~~~~~legsR~~~al~lw~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~~~~el~~~p-~l~iv~Fr~ 437 (522)
T TIGR03799 359 AEYILRKGSKDLGSHTLEGSRPGMAMLVYAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQPDFELVTEP-ELCLLTYRY 437 (522)
T ss_pred cchhcCCCCCccccceeecCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEecCC-CccEEEEEE
Confidence 0 0011112222223356667776666789999999999999999999885 79887743 445666665
Q ss_pred cCCCC----------------------CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 321 RNKKI----------------------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~----------------------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+... +..+.+++.++..++++............+...+|+++.+..|.
T Consensus 438 ~p~~~~~~l~~~~~~~~~~~~~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt 508 (522)
T TIGR03799 438 VPEEVQQALAKADEEQREKINELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTT 508 (522)
T ss_pred eChhhcccccccchhhhhhHHHHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCC
Confidence 32210 12444445555555565544321110000013589999877663
No 308
>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]
Probab=99.62 E-value=1.6e-13 Score=165.32 Aligned_cols=301 Identities=16% Similarity=0.134 Sum_probs=205.6
Q ss_pred eeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHH
Q psy13354 31 ELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 31 ~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~a 108 (1342)
.+..++..+++.+.+++...+.... .. ....+...++|+.+..+++++++.+ ..-.++.+||+|++.++.+
T Consensus 66 ~~~~~~~~~~~~a~~~~~~~~~~nl----~d---~~~~p~a~~~E~~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~a 138 (460)
T COG0076 66 LAGFCPTRVPPVAAELLVSALNKNL----GD---PDESPAAAELEERVVNMLSDLLGAPEEASGTFTSGGTEANLLALLA 138 (460)
T ss_pred EEccCCCCCHHHHHHHHHHHHhhcC----CC---cccChhHHHHHHHHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHH
Confidence 3445556666667777777664222 11 1223466699999999999999985 3345566999999988877
Q ss_pred ccC-----CC---C------EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCe--EEEE
Q psy13354 109 VLN-----PG---D------TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPK--LIIA 172 (1342)
Q Consensus 109 l~~-----pG---D------~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~--liv~ 172 (1342)
.-. .+ . .|+ .+..+|++..+.+...|.+.+.++.... +.++|++++++++.+.+.. ++-+
T Consensus 139 ar~~~~~~~~~~~~~~~~~P~ii---~s~~aH~s~~Kaa~~lG~~~~~v~~~~~-~~~id~~~l~~~i~~~t~~g~vV~~ 214 (460)
T COG0076 139 ARERWRKRALAESGKPGGKPNIV---CSETAHFSFEKAARYLGLGLRRVPTVPT-DYRIDVDALEEAIDENTIGGVVVGT 214 (460)
T ss_pred HHHHHHHHhhhcccccCCCCeEE---ecCcchhHHHHHHHHhCCCceeEEeccC-ccccCHHHHHHHHHhhccCceEEEE
Confidence 621 11 1 466 3447889999999999998888866544 7899999999999987765 4443
Q ss_pred cCCC-CCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC----CCCCcEEEecCCccCCCCCe-eEEEEech--
Q psy13354 173 GASA-YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP----VPFADFITSTTHKSLRGPRG-GFILMKKK-- 244 (1342)
Q Consensus 173 ~~s~-~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~----l~~~Divv~S~sK~l~gp~G-G~iv~~~~-- 244 (1342)
..+. .....|+++|+++|+++++|++||+|++............ ++.+|.++.++||++..|.| |+++.++.
T Consensus 215 aGtT~~G~iDdi~~ia~ia~~~~i~lHVDAA~GG~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~~~G~il~rd~e~ 294 (460)
T COG0076 215 AGTTDTGSIDDIEELADIAEEYGIWLHVDAAFGGFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPIGCGVVLFRDEEA 294 (460)
T ss_pred ecCCCCCccCCHHHHHHHHHHcCCcEEEEccccceeecccCccchhhcCCCCceEEEECcccccCCCCCceEEEEECHHH
Confidence 3322 3366799999999999999999999987554432222222 33589999999999988988 88888874
Q ss_pred hHHHHhhccCCcc----------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCC
Q psy13354 245 YKKIINSAVFPGI----------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKS 313 (1342)
Q Consensus 245 l~~~l~~~~~~~~----------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~ 313 (1342)
+.+.+.. ..++. .++.+.....++.+.+..+..+++.++.++..++++++.+.|++.| +++...| ..
T Consensus 295 l~~~~~~-~~~yl~~~~~~~~ti~~sr~~~~~~~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~~~e~~~~p-~l 372 (460)
T COG0076 295 LRRILIF-ADYYLPGGGIPNFTILGSRPGRQALALYANLRRLGREGYRKLLDRTLELARYLAEELEKLGDFELVNEP-EL 372 (460)
T ss_pred hhhhhhc-ccccCCCCCcCceeEeeccchHHHHHHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCCCcEeecCC-cc
Confidence 4333331 11111 1222222445556666666667999999999999999999999987 8887643 56
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHCCceeeec
Q psy13354 314 HIILVDLRNKKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 314 ~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+++.++.++...........+++.|..+...
T Consensus 373 ~~V~fr~~~~~~~~~~~~~~~~~~gw~v~~~ 403 (460)
T COG0076 373 PIVAFRLKDDEDTLADLSERLDRRGWQVPAQ 403 (460)
T ss_pred ceEEEEcCCcccchhchHHHHHhcCceeecc
Confidence 7788887554321223333344457777644
No 309
>PRK06234 methionine gamma-lyase; Provisional
Probab=99.62 E-value=1.5e-14 Score=174.15 Aligned_cols=214 Identities=21% Similarity=0.257 Sum_probs=154.9
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...+|++ .+++++|.+++++++ ||+.|+..++.++++|||+|+++...|+..+... ..+...|+ +++.+
T Consensus 62 ~~p~~~~Le~----~iA~~~g~~~~l~~~-sG~~Ai~~al~~ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~v 134 (400)
T PRK06234 62 GNPTSTEVEN----KLALLEGGEAAVVAA-SGMGAISSSLWSALKAGDHVVASDTLYGCTFALLNHGLTRYGV--EVTFV 134 (400)
T ss_pred CCccHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHhhCCe--EEEEE
Confidence 4566667777 889999988777777 9999999999999999999998887676554433 23455566 45555
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CC
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FA 220 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~ 220 (1342)
+.+ |++++++++++. +++|+++.+++| ...++++|+++|+++ |++||+|++|+.+... .++. .+
T Consensus 135 d~~-----d~e~l~~~i~~~-tklI~iesP~NPtG~v~dl~~I~~la~~~~~~i~livDea~~~~~~~-----~~l~~g~ 203 (400)
T PRK06234 135 DTS-----NLEEVRNALKAN-TKVVYLETPANPTLKVTDIKAISNIAHENNKECLVFVDNTFCTPYIQ-----RPLQLGA 203 (400)
T ss_pred CCC-----CHHHHHHHhccC-CeEEEEECCCCCCCCcCCHHHHHHHHHhcCCCCEEEEECCCCchhcC-----CchhhCC
Confidence 543 899999998764 566666666665 555999999999997 9999999999876542 1222 47
Q ss_pred cEEEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q psy13354 221 DFITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 221 Divv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~ 297 (1342)
|++++|++|+++|+. |||+++++++++.++........+...++..+++.... +. .+..+.++..+++.++.+
T Consensus 204 Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~---l~-tl~~r~~~~~~na~~~a~ 279 (400)
T PRK06234 204 DVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRG---MK-TLQIRMEKHCKNAMKVAK 279 (400)
T ss_pred cEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhc---cC-cHHHHHHHHHHHHHHHHH
Confidence 999999999996543 59999999888877643222233444455555443322 22 455677888899999999
Q ss_pred HHHhC
Q psy13354 298 ILDQR 302 (1342)
Q Consensus 298 ~L~~~ 302 (1342)
.|++.
T Consensus 280 ~L~~~ 284 (400)
T PRK06234 280 FLESH 284 (400)
T ss_pred HHHcC
Confidence 99875
No 310
>PRK07503 methionine gamma-lyase; Provisional
Probab=99.62 E-value=1.6e-14 Score=173.98 Aligned_cols=214 Identities=19% Similarity=0.223 Sum_probs=152.0
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....+++ .++++.|.+++++++ ||+.|+..++.++++|||+|++....+++.+... ..+...|+ ++..++
T Consensus 64 ~p~~~~le~----~lA~l~g~~~~i~~~-sG~~Al~~~l~~ll~~Gd~Viv~~~~y~~t~~~~~~~~~~~G~--~v~~vd 136 (403)
T PRK07503 64 NPTLALLEQ----RMASLEGGEAAVALA-SGMGAITATLWTLLRPGDEVIVDQTLYGCTFAFLHHGLGEFGV--TVRHVD 136 (403)
T ss_pred CchHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHHHHHcCCCCEEEEccCccchHHHHHHHHHhhCCE--EEEEeC
Confidence 444556666 899999998887777 9999999999999999999998776665443322 23445565 445445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++.+++++++ ++++|++..+++| ...|+++|+++|+++|++||+|++|+.+... .++. .+|++
T Consensus 137 ~~-----d~~~l~~~i~~-~tklV~le~p~NPtG~~~di~~I~~la~~~gi~lIvD~a~a~~~~~-----~~l~~g~Di~ 205 (403)
T PRK07503 137 LT-----DPAALKAAISD-KTRMVYFETPANPNMRLVDIAAVAEIAHGAGAKVVVDNTYCTPYLQ-----RPLELGADLV 205 (403)
T ss_pred CC-----CHHHHHHhcCc-cCcEEEEeCCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCCEE
Confidence 43 78999998876 4566666555555 4459999999999999999999999765331 1222 46999
Q ss_pred EecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
++|++|+++|+. ||+++.++++.+.++........+..+++..+++.... ++ .+..+.++..+++..+.+.|.
T Consensus 206 v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~---L~-tl~~r~~~~~~na~~~a~~L~ 281 (403)
T PRK07503 206 VHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRG---LK-TLALRMDRHCASAQAVAEWLA 281 (403)
T ss_pred EccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcC---cc-hHHHHHHHHHHHHHHHHHHHH
Confidence 999999996543 59999888888877642222233444455555443332 22 455567778899999999998
Q ss_pred hCC
Q psy13354 301 QRG 303 (1342)
Q Consensus 301 ~~g 303 (1342)
+..
T Consensus 282 ~~p 284 (403)
T PRK07503 282 RHP 284 (403)
T ss_pred hCC
Confidence 753
No 311
>PRK08574 cystathionine gamma-synthase; Provisional
Probab=99.61 E-value=1.2e-14 Score=173.64 Aligned_cols=212 Identities=19% Similarity=0.204 Sum_probs=150.6
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
+++...++|+ .+++++|.+++++++ ||+.|+..++.++++|||+|+++...|++.......+...|. .+..+.
T Consensus 51 ~np~~~~lE~----~lA~l~g~~~~l~~~-sG~~Ai~~~l~~ll~~GD~Vlv~~~~y~~~~~~~~~~~~~g~--~v~~~~ 123 (385)
T PRK08574 51 ENPTLRPLEE----ALAKLEGGVDALAFN-SGMAAISTLFFSLLKAGDRVVLPMEAYGTTLRLLKSLEKFGV--KVVLAY 123 (385)
T ss_pred CCccHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHhhccCc--EEEEEC
Confidence 4566667777 899999998888887 999999999999999999999887777665444433344455 333222
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
+|++++++++++.++++|+++.+++| ...|+++|+++|+++|++||+|++|+.+.... ++. .+|++
T Consensus 124 ------~d~~~l~~~i~~~~tklV~ie~p~NPtG~v~dl~~I~~la~~~gi~livD~t~a~~~~~~-----~l~~GaDiv 192 (385)
T PRK08574 124 ------PSTEDIIEAIKEGRTKLVFIETMTNPTLKVIDVPEVAKAAKELGAILVVDNTFATPLLYR-----PLRHGADFV 192 (385)
T ss_pred ------CCHHHHHHhcCccCceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCccccCC-----hhhhCCcEE
Confidence 36889999887645677777666666 45599999999999999999999997665422 222 37999
Q ss_pred EecCCccCCCCC---eeEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||++++ ++++.+.++..... ++....+..+++.... + +.+..+.++..+++.++.+.|
T Consensus 193 v~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~--~g~~~~p~~a~l~l~~---l-~tL~~R~~~~~~na~~la~~L 266 (385)
T PRK08574 193 VHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRR--LGTIMQPFEAYLVLRG---L-KTLEVRFERQCRNAMAIAEFL 266 (385)
T ss_pred EeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHh--cCCCCCHHHHHHHHcc---c-CcHHHHHHHHHHHHHHHHHHH
Confidence 999999996653 585555 56777766543222 3333444444333222 2 245567788899999999999
Q ss_pred HhC
Q psy13354 300 DQR 302 (1342)
Q Consensus 300 ~~~ 302 (1342)
++.
T Consensus 267 ~~~ 269 (385)
T PRK08574 267 SEH 269 (385)
T ss_pred HcC
Confidence 875
No 312
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=99.61 E-value=2.6e-14 Score=169.80 Aligned_cols=309 Identities=14% Similarity=0.123 Sum_probs=194.3
Q ss_pred eeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCc---chHHHHHHHHHHHHHHHhCCC--C-ceEecCCHHHHHHH
Q psy13354 31 ELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGC---KFIDLIEKIAINRLKKIFNAE--A-ANVQPHSGSQANQA 104 (1342)
Q Consensus 31 ~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~---~~~~~Le~~~~~~la~~~g~~--~-~vi~~~sGs~A~~~ 104 (1342)
.+.+++...|+.|++++.+.+.+ +. +.++..+..+ ....++.+++++.+++++|++ + ++++++|||.|++.
T Consensus 2 ~~~pGp~~~p~~V~~a~~~~~~~-~~--~~~rg~~~~~~r~~~~~~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~ 78 (355)
T cd00611 2 NFSAGPAALPEEVLEQAQKELLD-FN--GLGMSVMEMSHRSKDFEAIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAA 78 (355)
T ss_pred CCCCCCCCCCHHHHHHHHHHHhh-cc--cCCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHH
Confidence 47788999999999999988743 32 3333333323 334466677899999999973 4 44455459999999
Q ss_pred HHHHccC---CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCC-C-HHHHHHHHHhcCCeEEEEcCCCCCc
Q psy13354 105 VFFSVLN---PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKI-D-YKKVEYLAKKNKPKLIIAGASAYSQ 179 (1342)
Q Consensus 105 al~al~~---pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~i-d-~e~Le~~i~~~~~~liv~~~s~~~~ 179 (1342)
++.+++. +||+|++.. ++.+ .....+..|..++.+.. ++++.+ + ++..+..+++.+..+.+.+.++.++
T Consensus 79 ~~~~l~~~~~~~~~i~~g~--~~~~--~~~~a~~~g~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~lV~~~h~~t~tG 152 (355)
T cd00611 79 VPLNLLGDKGTADYVVTGA--WSAK--AAKEAKRYGGVVVIVAA--KEEGKYTKIPDVETWDLAPDAAYVHYCSNETIHG 152 (355)
T ss_pred HHHhcCCCCCeEEEEECCH--HHHH--HHHHHHhcCCCcEEEec--ccccCCCCCCCHhhcCCCCCCCEEEEeCCccccc
Confidence 9999987 444554211 1111 12234566776666654 322212 3 2222233444333344444444444
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC--CcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--- 253 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~--~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--- 253 (1342)
.. + .++++.||+++++|++|++|.. +++. .|++++|.||++ ||.| |++++++++.+.+....
T Consensus 153 ~~-~---~~i~~~~g~~~~VDa~qs~g~~-------~idv~~~~~~~ss~~K~l-GP~G~g~l~~~~~~~~~~~~~~~~~ 220 (355)
T cd00611 153 VE-F---DEVPDTGGVPLVADMSSNILSR-------PIDVSKFGVIYAGAQKNL-GPAGVTVVIVRKDLLGKARKITPSM 220 (355)
T ss_pred EE-c---ceecccCCCeEEEEccccccCC-------CCCHHHhCEEEeeccccc-CCCceEEEEECHHHHhhcccCCCCc
Confidence 43 2 2455669999999999999877 4432 466777799998 8999 99999998776544321
Q ss_pred --------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcE-EeeC-CCCC-eEEEEEc
Q psy13354 254 --------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIR-IVSG-GTKS-HIILVDL 320 (1342)
Q Consensus 254 --------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~-~~~~-~~~~-~~v~i~~ 320 (1342)
.....++|+.+...++.+++..+.+. +++.+.++..++++++++.|++. |+. .... .... .++.+.+
T Consensus 221 ~~~~~~~~~~~~~~Tpn~~~i~~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~ 300 (355)
T cd00611 221 LNYKTHADNNSLYNTPPTFAIYMMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRL 300 (355)
T ss_pred ccHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEc
Confidence 11124677888888888888877776 69999999999999999999998 752 2111 1122 3456666
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++..+..+... .+.+.|+.+... +.. .+.+|+|+..+++.
T Consensus 301 ~~~~l~~~~~~-~~~r~G~~~~~~----~~~----~g~vR~S~~~~nt~ 340 (355)
T cd00611 301 GKEELEKEFLK-EAEAAGMIGLKG----HRS----VGGIRASIYNALSL 340 (355)
T ss_pred CChhhhHHHHH-HHHHCCCcccCC----Ccc----cCeEEEEccCCCCH
Confidence 55322223333 344569964322 111 24699999888774
No 313
>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional
Probab=99.61 E-value=7.6e-14 Score=167.74 Aligned_cols=251 Identities=18% Similarity=0.208 Sum_probs=169.2
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~ 145 (1342)
+++...++|+ .++++.|.+++++++ ||+.|+..++.+++++||+|+++...++..+.. ...+...|+. ++.+
T Consensus 68 ~~p~~~~le~----~lA~l~g~~~al~~~-sG~~Ai~~~l~all~~Gd~Vl~~~~~~~~t~~~~~~~~~~~G~~--v~~v 140 (403)
T PRK07810 68 GNPTVSMFEE----RLRLIEGAEACFATA-SGMSAVFTALGALLGAGDRLVAARSLFGSCFVVCNEILPRWGVE--TVFV 140 (403)
T ss_pred CCchHHHHHH----HHHHHhCCCcEEEEC-ChHHHHHHHHHHHhCCCCEEEEccCCcchHHHHHHHHHHHcCcE--EEEE
Confidence 3455666666 899999999888888 999999999999999999999877666544333 3345566774 4444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.+ |+++++++++++ +++|++..++++ ...|+++|+++|+++|++||+|++|+.+.... ++. .+|+
T Consensus 141 d~~-----d~~~l~~ai~~~-tklV~~esp~Nptg~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~-----~~~~gaDi 209 (403)
T PRK07810 141 DGE-----DLSQWEEALSVP-TQAVFFETPSNPMQSLVDIAAVSELAHAAGAKVVLDNVFATPLLQR-----GLPLGADV 209 (403)
T ss_pred CCC-----CHHHHHHhcCcC-ceEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCCccccCC-----hhhcCCcE
Confidence 443 899999998764 456666555555 45599999999999999999999998765422 222 3799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|++|+++|.. ||+++++++.+. .++.... ..+...++..+++.... +. .+..+.++..+++.++.+.
T Consensus 210 vv~S~tK~l~g~g~~~gG~v~~~~~~~~~~l~~~~~--~~g~~~s~~~a~l~l~~---L~-tl~~R~~~~~~~a~~~a~~ 283 (403)
T PRK07810 210 VVYSGTKHIDGQGRVLGGAILGDREYIDGPVQKLMR--HTGPALSAFNAWVLLKG---LE-TLALRVRHSNASALRIAEF 283 (403)
T ss_pred EEccCCceecCCcCceeEEEEeChHHHHHHHHHHHH--HhCCCCCHHHHHHHHhc---cC-cHHHHHHHHHHHHHHHHHH
Confidence 9999999995533 599998887554 3432211 22334455555543332 22 5566788899999999999
Q ss_pred HHhCC-cEEee-C-----C----------CCCeEEEEEccCCCC-CHHHHHHHHHHCCcee
Q psy13354 299 LDQRG-IRIVS-G-----G----------TKSHIILVDLRNKKI-TGKIAESILESANIIC 341 (1342)
Q Consensus 299 L~~~g-~~~~~-~-----~----------~~~~~v~i~~~~~~~-~~~~~~~ll~~~GI~v 341 (1342)
|++.. +..+. + + ..+.++.+.++.... +.+.+..+++.-.+..
T Consensus 284 L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~~~~~~~~~~f~~~l~l~~ 344 (403)
T PRK07810 284 LEGHPAVRWVRYPFLPSHPQYDLAKRQMSGGGTVVTFELDAPEDAAKKRAFEVLDKLRVID 344 (403)
T ss_pred HhcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCCCcCHHHHHHHHHhCCceE
Confidence 98853 33222 1 1 224466777754221 2455667776544433
No 314
>PRK06767 methionine gamma-lyase; Provisional
Probab=99.61 E-value=3.4e-14 Score=170.52 Aligned_cols=233 Identities=18% Similarity=0.156 Sum_probs=158.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~ 145 (1342)
+.+...+|++ .+++++|.+++++++ ||+.|+..++.++++|||+|++....|++.+..... ....|+ .+..+
T Consensus 59 ~~pt~~~Le~----~lA~l~G~~~al~~~-sG~~Ai~~~l~al~~~Gd~Vv~~~~~y~~~~~~~~~~~~~~gi--~~~~~ 131 (386)
T PRK06767 59 GNPTVKLFEE----RMAVLEGGEEALAFG-SGMAAISATLIGFLKAGDHIICSNGLYGCTYGFLEVLEEKFMI--THSFC 131 (386)
T ss_pred CCcchHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCcHHHHHHHHHHHHhhcCe--EEEEe
Confidence 3455566666 899999988887777 999999999999999999999877666655443322 233344 33222
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Di 222 (1342)
+. .|++++++++++ ++++|+++.+++| ...++++|.++|+++|+++|+|++|+.+.... ++ ..+|+
T Consensus 132 ~~-----~d~~~l~~~i~~-~tklV~lesp~NptG~v~dl~~I~~la~~~g~~vivD~a~a~~~~~~-----pl~~g~Di 200 (386)
T PRK06767 132 DM-----ETEADIENKIRP-NTKLIFVETPINPTMKLIDLKQVIRVAKRNGLLVIVDNTFCSPYLQR-----PLELGCDA 200 (386)
T ss_pred CC-----CCHHHHHHhhCc-CceEEEEeCCCCCCceecCHHHHHHHHHHcCCEEEEECCCcccccCC-----chhcCCcE
Confidence 32 278999998875 4567776666666 45599999999999999999999987544321 22 24799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++|++|+++|+. ||+++++++.++.+...... ..++..++..+++. ...+. .+..+.++..+++.++.+.|
T Consensus 201 v~~S~sK~l~g~g~~~gG~v~~~~~~i~~~~~~~~~-~~g~~~~~~~a~l~---~~~L~-tl~~r~~~~~~~a~~la~~L 275 (386)
T PRK06767 201 VVHSATKYIGGHGDVVAGVTICKTRALAEKIRPMRK-DIGGIMAPFDAWLL---LRGLK-TLAVRMDRHCDNAEKIVSFL 275 (386)
T ss_pred EEecCcceecCCCCceeEEEEeChHHHHHHHHHHHH-HhCCCCCHHHHHHH---HcCCC-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999996554 69999998877665322111 22333344433322 22222 44556788899999999999
Q ss_pred HhC-CcEEeeCC----------CCCeEEEEEccC
Q psy13354 300 DQR-GIRIVSGG----------TKSHIILVDLRN 322 (1342)
Q Consensus 300 ~~~-g~~~~~~~----------~~~~~v~i~~~~ 322 (1342)
.+. ++..+..| ..+.++.+.+++
T Consensus 276 ~~~p~v~~v~~p~~~~~~~~~~~~gg~vsf~l~~ 309 (386)
T PRK06767 276 KNHDAVEGVWYPEGELASRQMKRGGGVISFSIKG 309 (386)
T ss_pred HcCCCccEEECCCcHHHHHhCCCCCceEEEEEcC
Confidence 985 56533311 124567777753
No 315
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=99.60 E-value=1.2e-13 Score=163.04 Aligned_cols=301 Identities=15% Similarity=0.146 Sum_probs=197.1
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCcc---CCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYY---GGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~---~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~p 112 (1342)
.|.+|++++.+.+. .+. ..+...+ ...+...++.+.+++.++++++.+ .++++++|||.|+++++..++.+
T Consensus 3 ~p~~v~~~~~~~~~-~~~--~~~~~~~~~~hr~~~f~~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl~~~ 79 (349)
T TIGR01364 3 LPEEVLEQAQKELL-NFN--GTGMSVMEISHRSKEFEAVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNLLAE 79 (349)
T ss_pred CCHHHHHHHHHHHh-Ccc--CCCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCC
Confidence 56678999888775 222 1222222 223334477777999999999963 36667767999999999999999
Q ss_pred CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEE-cCCCCCccc-CHHHHHH
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIA-GASAYSQYI-DFERFYH 188 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~-~~s~~~~~~-~l~~I~~ 188 (1342)
||++++......++- ........|. +..+..+.. ....+++++++. .+ ++++|.+ ++.+.++.. + +
T Consensus 80 ~~~~l~i~~G~fg~r-~~~~a~~~g~-~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~v~~th~ETstGv~~~-----~ 149 (349)
T TIGR01364 80 GKVADYIVTGAWSKK-AAKEAKKYGV-VNVVASGKEGNYTKIPDPSTWEI--SE-DAAYVHYCANETIHGVEFR-----E 149 (349)
T ss_pred CCeEEEEECCHHHHH-HHHHHHHhCC-cEEEeccccCCCCCCCCHHhcCC--CC-CCCEEEEcCCCCcccEecc-----e
Confidence 999987553322221 2445566677 555543311 222356665552 22 4455444 333333333 3 6
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-----------C
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV-----------F 254 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~-----------~ 254 (1342)
+++.+++++++|+++++|.. +++ ..|++++|.+|+| ||+| |+++.+++..+.+.... .
T Consensus 150 l~~~~~~l~iVDavss~g~~-------~id~~~~d~~~~ssqK~l-gP~Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~ 221 (349)
T TIGR01364 150 LPDVKNAPLVADMSSNILSR-------PIDVSKFGLIYAGAQKNI-GPAGLTVVIVRKDLLGRASRITPSMLNYKIHAEN 221 (349)
T ss_pred ecccCCCeEEEEccccccCc-------cCCHHHccEEEEeccccc-CCCceEEEEECHHHHhhcccCCCCcchHHHHHhc
Confidence 77778999999999998876 333 2579999999999 7999 99999998776553311 1
Q ss_pred CccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-C-CCC-eEEEEEccCCCCCHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIRIVSG-G-TKS-HIILVDLRNKKITGKI 329 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~-~~~-~~v~i~~~~~~~~~~~ 329 (1342)
....++|+.+...++..++..+.++ +++.+.++..++++++++.|++. |+..... + ... .++.+.+++.....++
T Consensus 222 ~~~~~Tp~~~~i~al~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~~~~~~ 301 (349)
T TIGR01364 222 DSMYNTPPTFAIYVSGLVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEELEKRF 301 (349)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChhHhHHH
Confidence 2223678888888988888888777 69999999999999999999998 5644321 1 122 3455666644333333
Q ss_pred HHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.. .+.+.|+++.+... . .+.+|+|+..+++.
T Consensus 302 ~~-~~~~~Gi~~~~~~~----~----~g~vRvS~~~~nt~ 332 (349)
T TIGR01364 302 LK-EAEERGLVSLKGHR----S----VGGMRASIYNAMPL 332 (349)
T ss_pred HH-HHHHCCCcccCCcc----c----cCeeEEECcCCCCH
Confidence 34 44556995543321 1 24699999888774
No 316
>TIGR00474 selA seryl-tRNA(sec) selenium transferase. In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.
Probab=99.60 E-value=4.7e-13 Score=161.51 Aligned_cols=289 Identities=18% Similarity=0.185 Sum_probs=174.5
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCcc--CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY--GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN 111 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~--~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~ 111 (1342)
.+..++++.+++++.+.+. .|. .....+- ..+..+.. +++.+++++|++++++++ ||+.|+..++.+ +.
T Consensus 88 lg~s~l~~~vieAv~~~~~-~y~--~l~~~l~~g~~g~r~~~----le~~lA~l~gae~alvv~-sg~aAi~l~l~~-l~ 158 (454)
T TIGR00474 88 LGRAPLAEEAIEAVTDAAR-GYS--NLEYDLETGKRGSRYSH----VEGLLCELTGAEDALVVN-NNAAAVLLALNT-LA 158 (454)
T ss_pred CCCCCCCHHHHHHHHHHHh-ccc--chhccccccccchHHHH----HHHHHHHHhCCCcEEEEC-CHHHHHHHHHHH-hC
Confidence 3446778889999888775 332 1110000 01222333 555999999999888877 999999988855 68
Q ss_pred CCCEEEEeecc---CCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCH
Q psy13354 112 PGDTIMGMSLQ---EGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDF 183 (1342)
Q Consensus 112 pGD~Vlv~~~~---~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l 183 (1342)
+||+|+++... +++.+.....+...|+ +++.++.+. ..+++++++++++++..+++.+.+|+. ...|+
T Consensus 159 ~GdeVIvs~~e~v~~ggs~~i~~~~~~~G~--~~~~v~~~~--~~~l~dle~aI~~~T~lv~~~h~sN~~~~G~~~~~dl 234 (454)
T TIGR00474 159 KGKEVIVSRGELVEIGGSFRIPDVMEQSGA--KLVEVGTTN--RTHLKDYEDAITENTALLLKVHTSNYRIVGFTEEVSI 234 (454)
T ss_pred CcCEEEECCChhhhhcchhhHHHHHHHcCC--EEEEeCCCC--CCCHHHHHHhcCcCCEEEEEEccCcccccCCCCCCCH
Confidence 99999987655 3333344344556676 445445432 348999999998766666777777765 25699
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcC------CCC---CCCC-CCcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAG------EYP---NPVP-FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~------~~~---~~l~-~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
++|+++|++||+++++|.+. |.+... ..+ .+.. .+|++++|.+||++||.+|++++++++++.++..
T Consensus 235 ~~I~~la~~~g~~vivD~~s--G~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~~G~i~g~~~~i~~l~~~- 311 (454)
T TIGR00474 235 AELVALGREHGLPVMEDLGS--GSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQAGIIVGKKELIERLKKN- 311 (454)
T ss_pred HHHHHHHHHcCCeEEEECCC--cccccchhccCCCCcccccHhHcCCCEEEecCccccCCCeEEEEEECHHHHHhhhhc-
Confidence 99999999999999999753 333110 111 1122 4799999999999888889999999888776532
Q ss_pred CCccccC-CcHHHHHHHHHHHHHhccch-----------HHHHHHHHHHHHHHHHHHHHhC---Cc--EEeeCC------
Q psy13354 254 FPGIQGG-PLMHVIAAKAVAFKEVLKPD-----------FKIYQKQVVKNAKILSKILDQR---GI--RIVSGG------ 310 (1342)
Q Consensus 254 ~~~~~~~-~~~~~~~Aaa~al~~~l~~~-----------~~~~~~~l~~~a~~l~~~L~~~---g~--~~~~~~------ 310 (1342)
+..-.- ..-...+++...+..++... +....+++.+++..+.+.|++. ++ .+....
T Consensus 312 -~l~r~lr~~k~~la~l~~~l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~ggg 390 (454)
T TIGR00474 312 -PLTRALRVDKLTLAALEATLRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALGPGFELEIVPGLSQVGGG 390 (454)
T ss_pred -hhHHHHhhChHHHHHHHHHHHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhccCCceEEEEEcCCcccCC
Confidence 110000 00001122222333222211 1122356777888888888762 33 333311
Q ss_pred --CC--CeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 311 --TK--SHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 311 --~~--~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
+. -+-..+.+.....+...+...|++...
T Consensus 391 ~~p~~~l~~~~v~~~~~~~~~~~l~~~lr~~~~ 423 (454)
T TIGR00474 391 SLPDERLPSYAVTLTPDGLSAEKLEARLRELPP 423 (454)
T ss_pred CCcCCCCCeEEEEEecCCCCHHHHHHHHhcCCC
Confidence 01 122334443334456666677776553
No 317
>PRK08249 cystathionine gamma-synthase; Provisional
Probab=99.59 E-value=3.2e-14 Score=170.76 Aligned_cols=213 Identities=22% Similarity=0.258 Sum_probs=152.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++...++++ .++++.|.+.+++++ ||++|+..++.+++.+||+|+++...|++...... .+...|+ ++..+
T Consensus 62 ~~p~~~~le~----~lA~l~g~~~~i~~s-sG~~Ai~~~l~all~~GD~Vi~~~~~y~~~~~~~~~~~~~~Gi--~v~~v 134 (398)
T PRK08249 62 TNPTVQAFEE----KVRILEGAEAATAFS-TGMAAISNTLYTFLKPGDRVVSIKDTYGGTNKIFTEFLPRMGV--DVTLC 134 (398)
T ss_pred CChHHHHHHH----HHHHHhCCCeEEEeC-ChHHHHHHHHHHhcCCCCEEEEcCCchHHHHHHHHHHHhhCCe--EEEEc
Confidence 3555566666 999999998888887 99999999999999999999988877665433332 2445565 44433
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Di 222 (1342)
+. .|++.+++++++ ++++|+++.+++| ...|+++|+++|+++|++||+|++|+.+... .++ ..+|+
T Consensus 135 d~-----~d~e~l~~~i~~-~tklV~ie~p~NPtg~v~dl~~I~~la~~~gi~livD~t~a~~~~~-----~~l~~~~Di 203 (398)
T PRK08249 135 ET-----GDHEQIEAEIAK-GCDLLYLETPTNPTLKIVDIERLAAAAKKVGALVVVDNTFATPINQ-----NPLALGADL 203 (398)
T ss_pred CC-----CCHHHHHHhcCC-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCcCccccC-----CchhhCCCE
Confidence 43 489999999876 4567776666666 4559999999999999999999998754331 122 24799
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+++|+||+++|+. ||++++++++++.++.... ..+...++..+++.... +. .+..+.++..+++..+.+.|
T Consensus 204 vv~S~sK~l~g~~~~~gG~vv~~~~l~~~l~~~~~--~~g~~~s~~~a~l~l~~---l~-tL~~R~~~~~~na~~la~~L 277 (398)
T PRK08249 204 VIHSATKFLSGHADALGGVVCGSKELMEQVYHYRE--INGATMDPMSAYLILRG---MK-TLKLRVRQQQESAMALAKYL 277 (398)
T ss_pred EeccCceecCCCCCceEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHHHhC---cc-hHHHHHHHHHHHHHHHHHHH
Confidence 9999999995532 5888888888887765432 22334444444443332 22 44566788899999999999
Q ss_pred HhCC
Q psy13354 300 DQRG 303 (1342)
Q Consensus 300 ~~~g 303 (1342)
++..
T Consensus 278 ~~~p 281 (398)
T PRK08249 278 QTHP 281 (398)
T ss_pred HcCC
Confidence 8753
No 318
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=99.59 E-value=2.4e-13 Score=162.06 Aligned_cols=240 Identities=19% Similarity=0.215 Sum_probs=159.8
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...+|++ .++++.|.+.+++++ ||++|+..++ +++.+||+|+++...+++..... ..+...|+ ++..+
T Consensus 50 ~~pt~~~le~----~la~l~g~~~~~~~~-sG~~ai~~~~-~ll~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~v 121 (366)
T PRK08247 50 GNPTRGVLEQ----AIADLEGGDQGFACS-SGMAAIQLVM-SLFRSGDELIVSSDLYGGTYRLFEEHWKKWNV--RFVYV 121 (366)
T ss_pred CCchHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHH-HHhCCCCEEEEecCCcCcHHHHHHHHhhccCc--eEEEE
Confidence 3455566666 999999999887777 9999998776 57889999999887776654433 23455676 44444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.. |++.+++++++ ++++|+++.++|| ...++++|+++|++||+++|+|++|+.+... .+.. .+|+
T Consensus 122 d~~-----d~~~l~~~i~~-~tklv~le~P~NP~~~~~dl~~I~~la~~~g~~lIvD~t~~~~~~~-----~p~~~g~di 190 (366)
T PRK08247 122 NTA-----SLKAIEQAITP-NTKAIFIETPTNPLMQETDIAAIAKIAKKHGLLLIVDNTFYTPVLQ-----RPLEEGADI 190 (366)
T ss_pred CCC-----CHHHHHHhccc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCCcccccc-----CchhcCCcE
Confidence 543 89999998876 4577777666666 4458999999999999999999998654331 1222 4799
Q ss_pred EEecCCccCCCC---CeeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGP---RGGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp---~GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|++|+++|+ .||+++++ +++.+.+....... +...++..+.+... .+. .+....++..+++..+.+.
T Consensus 191 ~i~S~sK~~~g~~d~~~G~iv~~~~~l~~~~~~~~~~~--g~~~s~~~a~l~~~---~l~-tl~~r~~~~~~~a~~l~~~ 264 (366)
T PRK08247 191 VIHSATKYLGGHNDVLAGLVVAKGQELCERLAYYQNAA--GAVLSPFDSWLLIR---GMK-TLALRMRQHEENAKAIAAF 264 (366)
T ss_pred EEeecceeccCCCceeeeEEecChHHHHHHHHHHHHhc--CCCCChHHHHHHHh---ccC-cHHHHHHHHHHHHHHHHHH
Confidence 999999999654 35998886 56666665432211 11223322222211 222 4455667789999999999
Q ss_pred HHhC-CcEEeeCC-CCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 299 LDQR-GIRIVSGG-TKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 299 L~~~-g~~~~~~~-~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
|++. ++..+..| .++.+. +.+.. .+...++++.
T Consensus 265 L~~~p~v~~v~~P~~gg~~s-f~~~~----~~~~~~~~~~ 299 (366)
T PRK08247 265 LNEQPGVTDVLYPGRGGMLS-FRLQD----EEWVNPFLKS 299 (366)
T ss_pred HHhCCCeeEEecCCcCcEEE-EEECC----HHHHHHHHHc
Confidence 9985 55533333 444444 45542 3555566654
No 319
>KOG1969|consensus
Probab=99.59 E-value=8.8e-14 Score=165.35 Aligned_cols=213 Identities=19% Similarity=0.288 Sum_probs=171.0
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcC--------------------------------C-CCcEEEEEccCcccH
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKK--------------------------------R-LHHAYLFTGTRGVGK 426 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~--------------------------------~-~~~~~Ll~G~~G~GK 426 (1342)
-|..||+|+.|.||.|-+.+=+.+..+|+.- + ....+||+||||.||
T Consensus 260 LWVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGK 339 (877)
T KOG1969|consen 260 LWVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGK 339 (877)
T ss_pred eeecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCCh
Confidence 5899999999999999888777776666421 1 114799999999999
Q ss_pred HHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC-c---cCCceE
Q psy13354 427 TTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP-I---NARYKI 502 (1342)
Q Consensus 427 T~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p-~---~~~~rv 502 (1342)
||+|+.+|+..+. -++++|+++.+....+.+.++.+.... + .+++.+
T Consensus 340 TTLAHViAkqaGY-----------------------------sVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~C 390 (877)
T KOG1969|consen 340 TTLAHVIAKQAGY-----------------------------SVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVC 390 (877)
T ss_pred hHHHHHHHHhcCc-----------------------------eEEEecccccccHHHHHHHHHHHHhhccccccCCCcce
Confidence 9999999999873 489999999888888888887765543 3 367889
Q ss_pred EEeccCccCCHHHHHHHHHhhcC--C-----CC--------------cEEEEEEeCCCC-CChHHHhccEEEEEEcCCCH
Q psy13354 503 YVIDEVHMLTHHAFNAMLKTLEE--P-----PK--------------YIKFILATTEPQ-KIPITVLSRCIQFNLKKMLH 560 (1342)
Q Consensus 503 viIDE~~~L~~~~~~~Ll~~Le~--p-----~~--------------~~vlIl~t~~~~-kl~~~L~sR~~~i~~~~l~~ 560 (1342)
+||||+|.-...+.+.++..++. + +. .--+|++||+.- --+..|+.-+.++.|.+++.
T Consensus 391 LViDEIDGa~~~~Vdvilslv~a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLYaPaLR~Lr~~A~ii~f~~p~~ 470 (877)
T KOG1969|consen 391 LVIDEIDGAPRAAVDVILSLVKATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLYAPALRPLRPFAEIIAFVPPSQ 470 (877)
T ss_pred EEEecccCCcHHHHHHHHHHHHhhcchhhcCcccchhhhhhhccccccCCEEEEecCccchhhhhcccceEEEEecCCCh
Confidence 99999998888888999988862 1 11 113678888643 22346667789999999999
Q ss_pred HHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCC---CCHHHHHHHh
Q psy13354 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEK---ITLNSMQEML 621 (1342)
Q Consensus 561 ~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~---It~e~V~~~v 621 (1342)
.-+.+.|+.+|.++|+.++..++..|++.+.+|+|..+|-|+-+....... ++..++.+..
T Consensus 471 s~Lv~RL~~IC~rE~mr~d~~aL~~L~el~~~DIRsCINtLQfLa~~~~r~ds~i~~~~i~a~~ 534 (877)
T KOG1969|consen 471 SRLVERLNEICHRENMRADSKALNALCELTQNDIRSCINTLQFLASNVDRRDSSISVKLICAKN 534 (877)
T ss_pred hHHHHHHHHHHhhhcCCCCHHHHHHHHHHhcchHHHHHHHHHHHHHhcccccccchhhhhhhhh
Confidence 999999999999999999999999999999999999999998776655433 6666666554
No 320
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.59 E-value=3.7e-14 Score=157.96 Aligned_cols=209 Identities=15% Similarity=0.199 Sum_probs=146.2
Q ss_pred HHHhhccCC-CCccccc-c-chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 379 VVLARKYRP-SNFNTLI-G-QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 379 ~~l~~k~~p-~~f~~lv-G-q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
++|.-.+.| .+|++.+ | +..++..+.+....... +.++||||+|+|||++++++++.+...+
T Consensus 9 l~l~~~~~~~~~fd~f~~~~n~~a~~~l~~~~~~~~~-~~l~l~Gp~G~GKThLl~a~~~~~~~~~-------------- 73 (235)
T PRK08084 9 LSLPLYLPDDETFASFYPGDNDSLLAALQNALRQEHS-GYIYLWSREGAGRSHLLHAACAELSQRG-------------- 73 (235)
T ss_pred eecCCCCCCcCCccccccCccHHHHHHHHHHHhCCCC-CeEEEECCCCCCHHHHHHHHHHHHHhCC--------------
Confidence 344433333 3688865 4 56677777777665543 4689999999999999999999876311
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--HHHHHHHHhhcCC--CCcEE
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--HAFNAMLKTLEEP--PKYIK 531 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p--~~~~v 531 (1342)
....++.++... ....++++... ...+++|||++.+.. +....|...+... .....
T Consensus 74 ----------~~v~y~~~~~~~----~~~~~~~~~~~------~~dlliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~ 133 (235)
T PRK08084 74 ----------RAVGYVPLDKRA----WFVPEVLEGME------QLSLVCIDNIECIAGDELWEMAIFDLYNRILESGRTR 133 (235)
T ss_pred ----------CeEEEEEHHHHh----hhhHHHHHHhh------hCCEEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCe
Confidence 111233332211 11122222221 235899999998853 3334444444321 12345
Q ss_pred EEEEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHH
Q psy13354 532 FILATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 532 lIl~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl 604 (1342)
+|++++.+. .+.+.|+||+ .++++.+|+.+++.+++++++..+|+.++++++++|+++++||+|.+.+.++++
T Consensus 134 li~ts~~~p~~l~~~~~~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~l~~~l~~l 213 (235)
T PRK08084 134 LLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQL 213 (235)
T ss_pred EEEeCCCChHHcCcccHHHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHHHHHHHHHH
Confidence 777777653 3568999999 899999999999999999999999999999999999999999999999999997
Q ss_pred Hhh--c-CCCCCHHHHHHHhc
Q psy13354 605 INY--S-SEKITLNSMQEMLS 622 (1342)
Q Consensus 605 ~~~--~-~~~It~e~V~~~v~ 622 (1342)
... . +.+||.+.+++++.
T Consensus 214 ~~~~l~~~~~it~~~~k~~l~ 234 (235)
T PRK08084 214 DRASITAQRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHhcCCCCCHHHHHHHHc
Confidence 533 2 46699999998764
No 321
>PRK04311 selenocysteine synthase; Provisional
Probab=99.58 E-value=5.3e-13 Score=161.54 Aligned_cols=288 Identities=16% Similarity=0.128 Sum_probs=175.9
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccC--CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG--GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN 111 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~--~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~ 111 (1342)
.+..++++++++++.+.+. .|. +....... .+..+.. +++.+++++|++++++++ ||+.|+..++.+ +.
T Consensus 93 lg~s~l~~~v~eav~~~~~-~~~--~le~~l~~g~~g~r~~~----~e~~lA~l~Gae~a~vv~-sgtaAl~l~l~~-l~ 163 (464)
T PRK04311 93 LGRALLSEAAIEAVTEAAR-GYS--NLEYDLATGKRGSRDRA----LAALLCALTGAEDALVVN-NNAAAVLLALNA-LA 163 (464)
T ss_pred CCCCCCCHHHHHHHHHHHh-ccc--ccccchhhcccchHHHH----HHHHHHHHhCCCeEEEEC-CHHHHHHHHHHH-hC
Confidence 4457788889999888774 332 11100100 1222333 555999999999888777 899999988866 58
Q ss_pred CCCEEEEeeccC---CccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----cccCH
Q psy13354 112 PGDTIMGMSLQE---GGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-----QYIDF 183 (1342)
Q Consensus 112 pGD~Vlv~~~~~---~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-----~~~~l 183 (1342)
+||+|+++..++ ++.+.....+...|+ +++.++.+ ...+++++++++++++..+++.+.+|+. ...|+
T Consensus 164 ~GdeVIvs~~e~~~~ggs~~i~~~~~~~G~--~l~~v~~~--~~t~~~dle~aI~~~TklV~~vh~sN~~i~G~~~~~dl 239 (464)
T PRK04311 164 AGKEVIVSRGELVEIGGAFRIPDVMRQAGA--RLVEVGTT--NRTHLRDYEQAINENTALLLKVHTSNYRIEGFTKEVSL 239 (464)
T ss_pred CCCEEEEcchhhhhcCcchhhHHHHHHCCc--EEEEECCC--CCCCHHHHHHhcCccCeEEEEEcCCCccccccCCcCCH
Confidence 999999876533 222333334455676 44544543 2347999999998776666777777753 35699
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhc------CCCC---CCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHHhhcc
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAA------GEYP---NPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~------~~~~---~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
++|+++|++||+++++|.+++ .+.. ...+ .++ ..+|++++|.+|+++||.+|++++++++++.++...
T Consensus 240 ~eI~~lak~~gi~vivD~gsG--~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp~~G~i~g~~~li~~l~~~~ 317 (464)
T PRK04311 240 AELAALGKEHGLPVVYDLGSG--SLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGPQAGIIVGKKELIARLKKHP 317 (464)
T ss_pred HHHHHHHHHcCCeEEEECCCc--ccccchhccCCCCCchhhHHhcCCcEEEecCcccccCCceEEEEEcHHHHHHHhhch
Confidence 999999999999999999643 2211 0111 112 247999999999998888899999999888776311
Q ss_pred --CCccccCCcHHHHHHHHHHHHHhccc--------h---HHHHHHHHHHHHHHHHHHHHhCC---c--EEeeC------
Q psy13354 254 --FPGIQGGPLMHVIAAKAVAFKEVLKP--------D---FKIYQKQVVKNAKILSKILDQRG---I--RIVSG------ 309 (1342)
Q Consensus 254 --~~~~~~~~~~~~~~Aaa~al~~~l~~--------~---~~~~~~~l~~~a~~l~~~L~~~g---~--~~~~~------ 309 (1342)
....... ...+++...+..++.. . +....+++.+++..+.+.|.... + .+...
T Consensus 318 ~~r~lr~dk---~~l~~l~~~l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gg 394 (464)
T PRK04311 318 LKRALRVDK---LTLAALEATLRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGG 394 (464)
T ss_pred hHHHHhcch---HHHHHHHHHHHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCC
Confidence 0110111 1222333333322210 0 12223677888999999998742 2 33321
Q ss_pred ----CCCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 310 ----GTKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 310 ----~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
...-+-..+.+.....+...+...|++...
T Consensus 395 gs~p~~~~~~~~v~~~~~~~~~~~l~~~lr~~~~ 428 (464)
T PRK04311 395 GSLPVDRLPSAAVTLTPKDRSLEALAARLRLLPP 428 (464)
T ss_pred CCCcCCCCCeEEEEEeCCCCCHHHHHHHHhcCCC
Confidence 011122334444434556667777776443
No 322
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=99.58 E-value=5.8e-14 Score=164.91 Aligned_cols=266 Identities=19% Similarity=0.220 Sum_probs=170.3
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC----
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK---- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~---- 150 (1342)
..++.+.+++.||++++.+.++|+|.+|.++++++++|||.|+ +..++|.|....+...|....++.-. ++.
T Consensus 68 I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~~~~gd~VL---v~RN~HkSv~~alil~ga~Pvyi~p~-~~~~gi~ 143 (417)
T PF01276_consen 68 IKEAEELAARAFGADKTFFLVNGSTSGNQAMIMALCRPGDKVL---VDRNCHKSVYNALILSGAIPVYIPPE-DNEYGII 143 (417)
T ss_dssp HHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHHTTTTCEEE---EETT--HHHHHHHHHHTEEEEEEEEE-E-TTS-B
T ss_pred HHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHhcCCCCEEE---EcCCcHHHHHHHHHHcCCeEEEecCC-ccccCCc
Confidence 3445669999999999999885666699999999999999999 55588899888888888744444322 221
Q ss_pred CCCCH-----HHHHHHHHhcCC--e--EEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-C
Q psy13354 151 EKIDY-----KKVEYLAKKNKP--K--LIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-F 219 (1342)
Q Consensus 151 ~~id~-----e~Le~~i~~~~~--~--liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~ 219 (1342)
+.+++ +.++++++++.. . +++++.|+|- ...++++|+++|++++++|+|||||+.-........+... .
T Consensus 144 ~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~lp~~a~~~g 223 (417)
T PF01276_consen 144 GGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTYYGVCYDIKEIAEICHKHGIPLLVDEAHGAHFGFHPLPRSALALG 223 (417)
T ss_dssp EEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-TTSEEE-HHHHHHHHCCTECEEEEE-TT-TTGGCSGGGTTCSSTT
T ss_pred cCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCCCeEEECHHHHHHHhcccCCEEEEEccccccccCCCCccchhhcc
Confidence 23556 999999986532 2 3444455554 5559999999999999999999999754332222222232 3
Q ss_pred Cc-------EEEecCCccCCCCCe-eEEEEechh---HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHH
Q psy13354 220 AD-------FITSTTHKSLRGPRG-GFILMKKKY---KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288 (1342)
Q Consensus 220 ~D-------ivv~S~sK~l~gp~G-G~iv~~~~l---~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l 288 (1342)
+| +++.|.||++++... +++..+.+. .+.++.....+..++|..+.++.+-.+...+.....++..++.
T Consensus 224 ad~~~~~~~~vvqS~HKtL~altQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmASlD~a~~~m~~~~G~~l~~~~ 303 (417)
T PF01276_consen 224 ADRPNDPGIIVVQSTHKTLPALTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMASLDVARAQMEEEEGRELLEEA 303 (417)
T ss_dssp SS-CTSBEEEEEEEHHHHSSS-TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHHHHHHHHHHHSHHHHHHHHHHH
T ss_pred CccccccceeeeechhhcccccccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 68 999999999988777 777777652 3555554334445566677777776665555234666778888
Q ss_pred HHHHHHHHHHHHh----CCcEEeeC----CCC-------------------C-----eEEEEEc---------cCCCCCH
Q psy13354 289 VKNAKILSKILDQ----RGIRIVSG----GTK-------------------S-----HIILVDL---------RNKKITG 327 (1342)
Q Consensus 289 ~~~a~~l~~~L~~----~g~~~~~~----~~~-------------------~-----~~v~i~~---------~~~~~~~ 327 (1342)
.+++..+++.+.+ .+|.+..+ ... . --+.+.+ .+.+.+.
T Consensus 304 i~~a~~~R~~i~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~K~ti~~pG~~~~g~~~~~Gi~g 383 (417)
T PF01276_consen 304 IELAEEFRKKINRLNDIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPTKLTINTPGIDADGELSELGIPG 383 (417)
T ss_dssp HHHHHHHHHHHHHHCCT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TTEEEEE-STBETTSSB-SS---H
T ss_pred HHHHHHHHHHHHhcCCCceEecCCccccCCccccccCccccchhchhcccCccccCCcEEEEEccCcCcCCcccccCCCH
Confidence 8999999999843 24554331 111 0 1234444 3456677
Q ss_pred HHHHHHHHHCCceeeec
Q psy13354 328 KIAESILESANIICNKN 344 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~ 344 (1342)
..+.++|+++||.+-..
T Consensus 384 ~~~~~~L~~~~I~~Ek~ 400 (417)
T PF01276_consen 384 YIVEKYLREHGIQVEKT 400 (417)
T ss_dssp HHHHHHHHHTTEE-SEE
T ss_pred HHHHHHHHHcCCEEEec
Confidence 78888888889988643
No 323
>PRK08133 O-succinylhomoserine sulfhydrylase; Validated
Probab=99.58 E-value=2.9e-13 Score=162.42 Aligned_cols=247 Identities=19% Similarity=0.242 Sum_probs=164.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++...++++ .+++++|.+++++++ ||++|+..++.+++++||+|+++...+++..... ..+...|. +++.++
T Consensus 60 ~p~~~~le~----~la~l~g~~~~v~~s-sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~t~~~~~~~~~~~G~--~v~~vd 132 (390)
T PRK08133 60 NPTVTMFQE----RLAALEGAEACVATA-SGMAAILAVVMALLQAGDHVVSSRSLFGSTVSLFEKIFARFGI--ETTFVD 132 (390)
T ss_pred ChHHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEccCcchhHHHHHHHHHHHcCc--EEEEEC
Confidence 444445555 899999998877776 9999999999999999999998877776654433 23455676 455555
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++++++ ++++|++..+++| ...++++|+++|+++|++||+|++++.+... .++. .+|++
T Consensus 133 ~~-----d~~~l~~~i~~-~tklV~ie~p~NptG~v~dl~~I~~la~~~gi~livD~t~~~~~~~-----~pl~~g~Div 201 (390)
T PRK08133 133 LT-----DLDAWRAAVRP-NTKLFFLETPSNPLTELADIAALAEIAHAAGALLVVDNCFCTPALQ-----QPLKLGADVV 201 (390)
T ss_pred CC-----CHHHHHHhcCc-CCeEEEEECCCCCCCCcCCHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCcEE
Confidence 54 78999998876 4566666555555 4559999999999999999999998655431 1222 36999
Q ss_pred EecCCccCCCC---CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGP---RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp---~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
++|+||+++++ .||++++++++++.+...... .+....+..+.+ + ...++ .+..+.++..+++..+.+.|+
T Consensus 202 v~S~sK~~~g~g~~~GG~vv~~~~~~~~~~~~~~~--~g~~~~~~~a~~--~-l~gl~-tl~~R~~~~~~~a~~la~~L~ 275 (390)
T PRK08133 202 IHSATKYLDGQGRVLGGAVVGSKELMEEVFGFLRT--AGPTLSPFNAWV--F-LKGLE-TLSLRMEAHSANALALAEWLE 275 (390)
T ss_pred EeecceeecCCcceEeEEEEcCHHHHHHHHHHHHH--hCCCCCHHHHHH--H-Hcccc-hHHHHHHHHHHHHHHHHHHHH
Confidence 99999999442 348888888776655432221 122223332222 2 22222 566677888899999999999
Q ss_pred hC-CcEEee-CC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 301 QR-GIRIVS-GG---------------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 301 ~~-g~~~~~-~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
+. ++..+. +. ..+.++.+.+.+ +.+.+.++++.-.+..
T Consensus 276 ~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~---~~~~~~~f~~~l~l~~ 330 (390)
T PRK08133 276 AHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKG---GREAAWRVIDATRLIS 330 (390)
T ss_pred hCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcC---CHHHHHHHHHhCCcce
Confidence 85 443222 11 123466677653 3455667777655543
No 324
>PRK07811 cystathionine gamma-synthase; Provisional
Probab=99.58 E-value=1.9e-13 Score=163.97 Aligned_cols=246 Identities=18% Similarity=0.199 Sum_probs=163.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
.+...++++ .+++++|.+.+++++ ||+.|+..++.+++++||+|+++...+++...... .....|+ .+..++
T Consensus 60 ~p~~~~Le~----~lA~~~g~~~~i~~~-sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~t~~~~~~~~~~~gi--~~~~~d 132 (388)
T PRK07811 60 NPTRTALEE----QLAALEGGAYGRAFS-SGMAATDCLLRAVLRPGDHIVIPNDAYGGTFRLIDKVFTRWGV--EYTPVD 132 (388)
T ss_pred CccHHHHHH----HHHHHhCCCceEEeC-CHHHHHHHHHHHHhCCCCEEEEcCCCchHHHHHHHHhCcCCCe--EEEEeC
Confidence 455556666 999999999888887 99999999999999999999988777664433222 2233354 444444
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
. .|++++++.+++ ++++|+++.+++| ...++++|+++|+++|++||+|++|+.+... .++. .+|++
T Consensus 133 ~-----~d~e~l~~~i~~-~tklV~ie~p~NPtg~~~dl~~I~~la~~~gi~lIvD~a~a~~~~~-----~p~~~gaDiv 201 (388)
T PRK07811 133 L-----SDLDAVRAAITP-RTKLIWVETPTNPLLSITDIAALAELAHDAGAKVVVDNTFASPYLQ-----QPLALGADVV 201 (388)
T ss_pred C-----CCHHHHHHhcCc-CCeEEEEECCCCCcceecCHHHHHHHHHHcCCEEEEECCCCccccC-----CchhhCCcEE
Confidence 3 389999998876 4667777666666 5569999999999999999999998765431 1222 47999
Q ss_pred EecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||+++++ +++.+.++.... ..+....+..+++ ++. .+. .+..+.++..+|+..+.+.|
T Consensus 202 v~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~--~~g~~~s~~~a~l--~~~-~L~-tl~~R~~~~~~na~~la~~L 275 (388)
T PRK07811 202 VHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQN--GAGAVPGPFDAYL--TLR-GLK-TLAVRMDRHSENAEAVAEFL 275 (388)
T ss_pred EecCceeecCCCCcEEEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHH--HHh-ccC-cHHHHHHHHHHHHHHHHHHH
Confidence 999999996654 5888876 456555543221 1122223333322 222 222 45567788899999999999
Q ss_pred HhC-CcEEee-CCC---------------CCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 300 DQR-GIRIVS-GGT---------------KSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 300 ~~~-g~~~~~-~~~---------------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
++. ++..+. ++- .+.++.+.+++ +.+.+.++++.-.+.
T Consensus 276 ~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~---~~~~~~~f~~~l~~~ 330 (388)
T PRK07811 276 AGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAG---GEEAARDFCARTKVF 330 (388)
T ss_pred HhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCC---CHHHHHHHHHhCCcc
Confidence 885 333222 111 13366777753 234566777664543
No 325
>PRK08045 cystathionine gamma-synthase; Provisional
Probab=99.58 E-value=3.1e-13 Score=161.59 Aligned_cols=246 Identities=15% Similarity=0.176 Sum_probs=161.6
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~ 146 (1342)
++....|++ +++++.|.+.+++++ ||++|+..++.++++|||+|+++...|++....... ....+. .+..++
T Consensus 51 ~pt~~~L~~----~lA~l~g~~~~i~~~-sg~~Ai~~~l~~l~~~GD~Vl~~~~~y~~~~~~~~~~~~~~gi--~v~~vd 123 (386)
T PRK08045 51 NPTRDVVQR----ALAELEGGAGAVLTN-TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVD 123 (386)
T ss_pred CccHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhCCe--EEEEeC
Confidence 444455555 899999977666655 999999999999999999999888777654433322 223333 333333
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
..|++.+++.+++ ++++|+++.++|| ...|+++|.++|+++|++||+|++|..+.. ..++. .+|++
T Consensus 124 -----~~d~e~l~~~l~~-~tklV~l~sP~NPtG~v~di~~I~~ia~~~g~~vivDeay~~~~~-----~~pl~~gaDiv 192 (386)
T PRK08045 124 -----QGDEQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREAGAVSVVDNTFLSPAL-----QNPLALGADLV 192 (386)
T ss_pred -----CCCHHHHHHhccc-CCeEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCCcccc-----CCchhhCCCEE
Confidence 2489999998876 5677777777766 455999999999999999999999876533 12333 47999
Q ss_pred EecCCccCCCCCe---eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+.+ |++++ ++++.+.+....... +...++..+.+. ...+. .+..++++..+++..+.+.|
T Consensus 193 v~S~tK~l~G~~d~~~G~vi~~~~~~~~~l~~~~~~~--g~~~~p~~~~l~---~rgl~-tl~~R~~~~~~na~~la~~L 266 (386)
T PRK08045 193 LHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNI--GVTGGAFDSYLL---LRGLR-TLVPRMELAQRNAQAIVKYL 266 (386)
T ss_pred EeecceeccCCCCceeEEEEeCcHHHHHHHHHHHHhc--CCCCCHHHHHHH---Hhhhc-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999977664 88776 456666665322221 222233333222 22222 46677899999999999999
Q ss_pred HhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 300 DQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 300 ~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
+..+ +. +..++ ..+.++.+.+++ +.+.+.++++.-.+.
T Consensus 267 ~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~---~~~~~~~f~~~l~~~ 321 (386)
T PRK08045 267 QTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG---DEQTLRRFLGGLSLF 321 (386)
T ss_pred HcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecC---cHHHHHHHHHhccce
Confidence 9864 32 22211 112356676653 245556666664544
No 326
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=99.58 E-value=1.9e-13 Score=167.99 Aligned_cols=281 Identities=15% Similarity=0.149 Sum_probs=172.9
Q ss_pred HHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCC
Q psy13354 73 LIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNK 149 (1342)
Q Consensus 73 ~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~ 149 (1342)
+...+..+++++++|.+ ..+++++||++++..++.++ ..+||+|+++...|+.+...+.. ....|. +++.++.++
T Consensus 112 ~~~~e~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~~~~g~~Vlv~~~~~~~~~~~~~~~~~~~G~--~~~~v~~~~ 189 (447)
T PRK00451 112 QAIFEYQTMICELTGMDVANASMYDGATALAEAALMAVRITKRKKVLVSGAVHPEYREVLKTYLKGQGI--EVVEVPYED 189 (447)
T ss_pred HHHHHHHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHHhcCCCEEEEeCccCHHHHHHHHHHHHhCCc--EEEEecCCC
Confidence 34444556889999987 34445658888998888887 47999999877666655443332 223466 555556666
Q ss_pred CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEE--EcccchhhhhcCCCCCCCCCCcEEEec
Q psy13354 150 KEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMV--DMAHYAGLIAAGEYPNPVPFADFITST 226 (1342)
Q Consensus 150 ~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIv--Dea~~~g~~~~~~~~~~l~~~Divv~S 226 (1342)
+ .+|++++++.++++ +++++++.++++ ...|+++|+++|+++|+++++ |.+ +.|... .+. .-.+|++++|
T Consensus 190 ~-~~d~~~l~~~i~~~-t~~v~l~~pn~tG~v~~l~~I~~~a~~~~~~~iv~~d~~-~~g~~~---~~~-~~~~D~~~~s 262 (447)
T PRK00451 190 G-VTDLEALEAAVDDD-TAAVVVQYPNFFGVIEDLEEIAEIAHAGGALFIVGVDPV-SLGLLK---PPG-EYGADIVVGE 262 (447)
T ss_pred C-CCCHHHHHHhcCCC-eEEEEEECCCCCCeeCCHHHHHHHHHHCCCEEEEEcChH-HhccCC---Ccc-cCCCCEEEEC
Confidence 6 89999999998764 455555555544 555999999999999999998 543 333221 011 1147999997
Q ss_pred CCcc-----CCCCCeeEEEEechhHHHHhhcc-----------------------CCcccc----CCcHHHH-HHHHHHH
Q psy13354 227 THKS-----LRGPRGGFILMKKKYKKIINSAV-----------------------FPGIQG----GPLMHVI-AAKAVAF 273 (1342)
Q Consensus 227 ~sK~-----l~gp~GG~iv~~~~l~~~l~~~~-----------------------~~~~~~----~~~~~~~-~Aaa~al 273 (1342)
.+|| ++||..||+++++++++.+.... .....+ +.....+ .+++.++
T Consensus 263 ~~k~~~~~~~~Gpg~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aaa~~l 342 (447)
T PRK00451 263 GQPLGIPLSFGGPYLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSNICTNQALNALAAAIYM 342 (447)
T ss_pred CCcCCCCCCCCCCCchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeeccccccccccccccccccccHHHHHHHHHHHH
Confidence 7775 54564499999988877642100 000001 1111122 2223233
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCC
Q psy13354 274 KEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEK 352 (1342)
Q Consensus 274 ~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~ 352 (1342)
.....+++++..+++.++++++.+.|.+. |+++. .+....++.++++ ..+.++.++++++ ||.+.....+..+.
T Consensus 343 ~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~-~~~~~~~~~v~~~--~~~~~~~~~L~~~-gi~~~~~~~~~~~~- 417 (447)
T PRK00451 343 SLLGPEGLRELAEQNHQKAHYLAERLAEIGGVELF-DGPFFNEFVVRLP--KPAEEVNEALLEK-GILGGYDLGRYYPE- 417 (447)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHHhhcCCEEec-CCCeEEEEEEecC--CCHHHHHHHHHhc-CCCCCcccccccCC-
Confidence 33445578889999999999999999987 57764 2211122334443 2245677777665 77643211111111
Q ss_pred ccccccccccccccccc
Q psy13354 353 PYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 353 ~~~~~~lRi~~~~~~t~ 369 (1342)
..+.+|++++..+|.
T Consensus 418 --~~~~~rvs~~~~~t~ 432 (447)
T PRK00451 418 --LGNHLLVCVTEKRTK 432 (447)
T ss_pred --cCCEEEEecCCCCCH
Confidence 134699999887664
No 327
>PRK08861 cystathionine gamma-synthase; Provisional
Probab=99.58 E-value=6.5e-14 Score=166.82 Aligned_cols=213 Identities=19% Similarity=0.201 Sum_probs=151.2
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~ 145 (1342)
+++....|++ .++++.|.+.+++++ ||++|+..++.+++++||+|+++...+++.+..... ....|. ++..+
T Consensus 51 ~npt~~~Le~----~lA~leg~e~ivvt~-gg~~Ai~~~l~all~~Gd~Il~~~~~y~~~~~~~~~~~~~~gi--~v~~v 123 (388)
T PRK08861 51 GNPNRGLLEQ----TLSELESGKGAVVTN-CGTSALNLWVSALLGPDDLIVAPHDCYGGTYRLFNTRANKGDF--KVQFV 123 (388)
T ss_pred CCchHHHHHH----HHHHHhCCCeEEEEC-CHHHHHHHHHHHHcCCCCEEEEcCCchHHHHHHHHHHHhcCCe--EEEEE
Confidence 3555666666 899999987777776 999999999999999999999877666654333322 223344 55544
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+. .|++++++++++ ++++|+++.++|| ...|+++|+++|+++|+++|+|++|..+.+. .+++ .+|+
T Consensus 124 d~-----~d~e~l~~~i~~-~tklV~lesP~NPtG~v~dl~~I~~la~~~gi~vIvDea~~~~~~~-----~pl~~GaDi 192 (388)
T PRK08861 124 DQ-----SDAAALDAALAK-KPKLILLETPSNPLVRVVDIAELCQKAKAVGALVAVDNTFLTPVLQ-----KPLELGADF 192 (388)
T ss_pred CC-----CCHHHHHHhcCc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCccccccC-----CCcccCCCE
Confidence 42 388999988876 5677777666666 5559999999999999999999999876542 2333 4899
Q ss_pred EEecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|+||+++|+. ||++++++ ++.+.++.... ..|...+|..+.+ . ..-+. -+.-+.++..+++..+.+.
T Consensus 193 vv~S~tK~l~G~~d~~gG~i~~~~~~~~~~~~~~~~--~~G~~~~p~~a~l--~-~rgl~-Tl~lR~~~~~~~a~~~a~~ 266 (388)
T PRK08861 193 VIHSTTKYINGHSDVIGGVLITKTKEHAEELAWWGN--CIGATGTPFDSYM--T-LRGIR-TLGARMRVHEESAQQILAY 266 (388)
T ss_pred EEeecceeccCCCcceeEEEEecHHHHHHHHHHHHh--ccCCCCChHHHHH--H-HhcCC-CHHHHHHHHHHHHHHHHHH
Confidence 9999999997765 58888754 56665553222 2234434444332 2 22232 5666788999999999999
Q ss_pred HHhCC
Q psy13354 299 LDQRG 303 (1342)
Q Consensus 299 L~~~g 303 (1342)
|+...
T Consensus 267 L~~~p 271 (388)
T PRK08861 267 LQTQS 271 (388)
T ss_pred HHhCC
Confidence 99864
No 328
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=99.58 E-value=1.5e-13 Score=167.30 Aligned_cols=317 Identities=15% Similarity=0.112 Sum_probs=183.3
Q ss_pred cCceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHH
Q psy13354 27 NNNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~ 100 (1342)
++.|.+.++. .. .+|.+.+++.+.+.. .. .++. . ++.. ++..++++.+++++|.+ +.+++++||++
T Consensus 36 ~~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~-~~~~-~-~~~~----~~~~~l~~~l~~~~~~~~~~v~~~~sgse 107 (413)
T cd00610 36 NRYLDFLSGIGVLNLGHNHPEVVEALKEQLAK-LT-HFSL-G-FFYN----EPAVELAELLLALTPEGLDKVFFVNSGTE 107 (413)
T ss_pred CEEEEcCccHHhhccCCCCHHHHHHHHHHHHh-Cc-CccC-c-ccCC----HHHHHHHHHHHHhCCCCCCEEEEcCcHHH
Confidence 3456665542 22 447799998888842 11 1110 0 0112 44555666999999832 44555559999
Q ss_pred HHHHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhC----C----ceeEEEEecCCC------CCCCCHHHHHHHHHh
Q psy13354 101 ANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMS----G----KWFNSICYGLNK------KEKIDYKKVEYLAKK 164 (1342)
Q Consensus 101 A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~----g----~~~~~v~~~~~~------~~~id~e~Le~~i~~ 164 (1342)
|+..++..+ ..+++.|++.+..+.++.......... + ....++.++.++ ++..|++.+++.+++
T Consensus 108 a~~~al~~~~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~ 187 (413)
T cd00610 108 AVEAALKLARAYTGRKKIISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEE 187 (413)
T ss_pred HHHHHHHHHHHHcCCCeEEEECCCcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhc
Confidence 999999987 367899998776655543322211110 0 011233444442 234488999998876
Q ss_pred c--CCeEEEEcCCCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccchh-hhhcCCCCCCCC-CCcEEEecCCccCCCC
Q psy13354 165 N--KPKLIIAGASAYS-Q-YID----FERFYHIAKNINSYFMVDMAHYAG-LIAAGEYPNPVP-FADFITSTTHKSLRGP 234 (1342)
Q Consensus 165 ~--~~~liv~~~s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~~g-~~~~~~~~~~l~-~~Divv~S~sK~l~gp 234 (1342)
. +++++++.+.+++ + ..+ +++|.++|++||+++|+||+|+.. ..+......... .+|++ |+||+++++
T Consensus 188 ~~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~--t~sK~l~~g 265 (413)
T cd00610 188 HPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIV--TLGKGLGGG 265 (413)
T ss_pred CCCCEEEEEEccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeE--EEcccccCc
Confidence 3 4566666553333 2 234 999999999999999999998732 111110111111 24654 667999543
Q ss_pred Ce-eEEEEechhHHHH--hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc--EEee-
Q psy13354 235 RG-GFILMKKKYKKII--NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI--RIVS- 308 (1342)
Q Consensus 235 ~G-G~iv~~~~l~~~l--~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~--~~~~- 308 (1342)
.. |++++++++++.+ ......+.++. ++...+++.+..+.+.. .+..+++.++.+++.+.|++... ....
T Consensus 266 ~~~g~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~~a~~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~ 341 (413)
T cd00610 266 LPLGAVLGREEIMDAFPAGPGLHGGTFGG--NPLACAAALAVLEVLEE--EGLLENAAELGEYLRERLRELAEKHPLVGD 341 (413)
T ss_pred cccEEEEEcHHHHHhhccCCCCCCCCCCc--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCCcEEE
Confidence 22 8899999888886 22112222222 33333344444444332 34567888888889888877522 2111
Q ss_pred CCCCCeEEEEEccCC--------CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 309 GGTKSHIILVDLRNK--------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~--------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
....+.++++.+... .....+...++ ++||.+.+.. ...+|++++..++
T Consensus 342 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~gv~v~~~~----------~~~lR~~~~~~~t 398 (413)
T cd00610 342 VRGRGLMIGIELVKDRATKPPDKELAAKIIKAAL-ERGLLLRPSG----------GNVIRLLPPLIIT 398 (413)
T ss_pred eecCceEEEEEEecCCCcCCcchHHHHHHHHHHH-HCCeEEeecC----------CCEEEEECCCcCC
Confidence 123457788877653 12334555555 5599998652 2358998877655
No 329
>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase. In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.
Probab=99.58 E-value=9.3e-13 Score=157.59 Aligned_cols=232 Identities=14% Similarity=0.143 Sum_probs=160.9
Q ss_pred chHHHHHHHHHHHHHHHhCCC---CceEecCCHH-HHHHHHHHHcc--C-CCCEEEEeeccCCccchhhHHhhhCCceeE
Q psy13354 69 KFIDLIEKIAINRLKKIFNAE---AANVQPHSGS-QANQAVFFSVL--N-PGDTIMGMSLQEGGHLTHGMMLNMSGKWFN 141 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs-~A~~~al~al~--~-pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~ 141 (1342)
...-.+.+.+.+.+++++|.+ .+++++ +|| .++.+++.++- . +||+|+++.. .|.+...++...|....
T Consensus 101 s~~~~l~~~~e~~~~~~~G~~~~~~a~~v~-~~Tg~al~laL~alr~~~~~gd~VI~p~~---th~S~~kAi~~~G~~pv 176 (444)
T TIGR03531 101 SLLYKLTNKLVKDFLKLLGLRSIKSAFVVP-LATGMSLSLCLSALRHKRPKAKYVIWPRI---DQKSCIKAISTAGFEPR 176 (444)
T ss_pred cHHHHHHHHHHHHHHHHcCCCCCCEEEEEC-CHHHHHHHHHHHHcCCcCCCCCEEEEECc---ChHHHHHHHHHcCCeEE
Confidence 335677788888999999998 566666 888 58888888774 2 6899997663 46777888888898655
Q ss_pred EEEecC-CCCCCCCHHHHHHHHHhcC---CeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-
Q psy13354 142 SICYGL-NKKEKIDYKKVEYLAKKNK---PKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP- 214 (1342)
Q Consensus 142 ~v~~~~-~~~~~id~e~Le~~i~~~~---~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~- 214 (1342)
+++... ++++.+|++++++++++.+ +.+++.+++.++ ...|+++|+++|++||+|+|+|+||+.+........
T Consensus 177 ~Vd~~~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~ddL~eIa~la~k~gI~lIvDaAyg~~~~~~~~~~~ 256 (444)
T TIGR03531 177 VIETVLDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDDIEEIAKICANYDIPHIVNNAYGLQSNKYMELIN 256 (444)
T ss_pred EeeeeecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhCHHHHHHHHHHcCCEEEEECcCcCcChhhhhhhh
Confidence 554312 4678999999999998643 233333344343 467999999999999999999999986443211111
Q ss_pred CCC--CCCcEEEecCCccCCCCCe-eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy13354 215 NPV--PFADFITSTTHKSLRGPRG-GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290 (1342)
Q Consensus 215 ~~l--~~~Divv~S~sK~l~gp~G-G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~ 290 (1342)
... ..+|++++|+||++..|.+ |++++ ++++.+.+... .++.. ...+.+. ++..++....++++++.++..+
T Consensus 257 ~g~~~Grad~vv~s~hK~l~~pg~Gg~I~~~d~el~~~i~~~-y~g~~--~~s~~~~-~~~~ll~~G~~g~~~li~~~~~ 332 (444)
T TIGR03531 257 KAIKVGRVDAVVSSTDKNFMVPVGGAIIYSFDENFIQEISKS-YPGRA--SASPSLD-VLITLLSLGSKGYLELLKERKE 332 (444)
T ss_pred ccccccCCCeEEEeCccCCCCCCCEEEEEECCHHHHHHHHHh-ccCCC--CChHHHH-HHHHHHHhCHHHHHHHHHHHHH
Confidence 111 2369999999999966554 66657 55777777653 22222 2233333 3445556666688999999999
Q ss_pred HHHHHHHHHHhC----CcEEee
Q psy13354 291 NAKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 291 ~a~~l~~~L~~~----g~~~~~ 308 (1342)
+++++.+.|.+. |..+..
T Consensus 333 ~a~~l~~~L~~l~~~~~~~~~~ 354 (444)
T TIGR03531 333 MYKYLKELLQKLAERHGERLLD 354 (444)
T ss_pred HHHHHHHHHHHHHHhhCcEeec
Confidence 999999998773 555543
No 330
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.57 E-value=7.1e-14 Score=155.55 Aligned_cols=200 Identities=17% Similarity=0.257 Sum_probs=150.1
Q ss_pred CCCCcccccc--chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 386 RPSNFNTLIG--QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 386 ~p~~f~~lvG--q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
+|.+|+++++ .+.++..+.++.........++|+||+|+|||++++++++.+...+
T Consensus 13 ~~~~~d~f~~~~~~~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~---------------------- 70 (227)
T PRK08903 13 PPPTFDNFVAGENAELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGG---------------------- 70 (227)
T ss_pred ChhhhcccccCCcHHHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC----------------------
Confidence 4668999773 4667777777776544456799999999999999999999874211
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC--CcEEEEEEeCCCC-
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP--KYIKFILATTEPQ- 540 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~--~~~vlIl~t~~~~- 540 (1342)
..+..+++.... +.. .+.....+++|||++.++...+..|+.+++... ...++|++++.+.
T Consensus 71 ----~~~~~i~~~~~~------~~~------~~~~~~~~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~ 134 (227)
T PRK08903 71 ----RNARYLDAASPL------LAF------DFDPEAELYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPL 134 (227)
T ss_pred ----CcEEEEehHHhH------HHH------hhcccCCEEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHH
Confidence 123444443211 111 223345799999999998878888888886422 2334566665433
Q ss_pred --CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc---CCCC
Q psy13354 541 --KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS---SEKI 612 (1342)
Q Consensus 541 --kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~---~~~I 612 (1342)
.+.+.+.||+ ..++++++++++....+.+.+.+.|+.++++++++|++.+.||++.+.+.++++..++ +..|
T Consensus 135 ~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~l~~~l~~l~~~~~~~~~~i 214 (227)
T PRK08903 135 ALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPSLMALLDALDRYSLEQKRPV 214 (227)
T ss_pred hCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 3456788785 7999999999999999999999999999999999999999999999999999877665 4569
Q ss_pred CHHHHHHHhcc
Q psy13354 613 TLNSMQEMLSI 623 (1342)
Q Consensus 613 t~e~V~~~v~~ 623 (1342)
|...|+++++.
T Consensus 215 ~~~~~~~~l~~ 225 (227)
T PRK08903 215 TLPLLREMLAQ 225 (227)
T ss_pred CHHHHHHHHhc
Confidence 99999998863
No 331
>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed
Probab=99.57 E-value=1.9e-13 Score=164.26 Aligned_cols=248 Identities=19% Similarity=0.247 Sum_probs=166.6
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++....+++ .+++++|.+.+++++ +|+.|+..++.++++|||+|+++...++++..... .....|+ ++..++
T Consensus 64 ~p~~~~Le~----~lA~l~G~~~~~~~~-sG~~Ai~~~l~~~l~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~vd 136 (398)
T PRK07504 64 NPTVDMFEK----RMCALEGAEDARATA-SGMAAVTAAILCQVKAGDHVVAARALFGSCRYVVETLLPRYGI--ESTLVD 136 (398)
T ss_pred CchHHHHHH----HHHHHhCCCeeeEec-CHHHHHHHHHHHHhCCCCEEEEcCCchhHHHHHHHHHHhhcCe--EEEEEC
Confidence 444556665 899999999888877 99999998888889999999988777766543332 2334465 444333
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+|++++++++++ ++++|+++++++| ...|+++|.++|+++|+++|+|++|+.+... .+.. .+|++
T Consensus 137 -----~~d~e~l~~ai~~-~tklV~lesp~NptG~v~dl~~I~~la~~~gi~lvvD~a~a~~~~~-----~~~~~gaDiv 205 (398)
T PRK07504 137 -----GLDLDNWEKAVRP-NTKVFFLESPTNPTLEVIDIAAVAKIANQAGAKLVVDNVFATPLFQ-----KPLELGAHIV 205 (398)
T ss_pred -----CCCHHHHHHhcCc-CceEEEEECCCCCCcEecCHHHHHHHHHHcCCEEEEECCccccccC-----CchhhCCCEE
Confidence 2589999998875 4567776666666 5559999999999999999999999866542 2222 37999
Q ss_pred EecCCccCCCCC---eeEEEEechhHHH-HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYKKI-INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~~~-l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|+||+++|+. ||+++++++++.. ++.... ..+...++..+++.... +. .+..+.++..+++..+.+.|
T Consensus 206 v~S~sK~l~g~g~~~GG~vv~~~~~i~~~~~~~~~--~~g~~~s~~~A~~~l~~---L~-tl~~R~~~~~~na~~la~~L 279 (398)
T PRK07504 206 VYSATKHIDGQGRCLGGVVLSDKAWIEEHLQDYFR--HTGPSLSPFNAWTLLKG---LE-TLPVRVRQQTESAAAIADFL 279 (398)
T ss_pred EeeccccccCCccceEEEEEeCcHHHHHHHHHHHH--HhCCCCCHHHHHHHHhc---cc-hHHHHHHHHHHHHHHHHHHH
Confidence 999999995532 4888888876543 332111 12333444544443332 22 45567788889999999999
Q ss_pred HhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCceee
Q psy13354 300 DQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANIICN 342 (1342)
Q Consensus 300 ~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~ 342 (1342)
++.. +. +..++ ..+.++.+.+.+ +.+.+..+++.-.+.-.
T Consensus 280 ~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~---~~~~~~~~~~~l~~~~~ 336 (398)
T PRK07504 280 AGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKG---GKEAAFRFLNALKIVRI 336 (398)
T ss_pred HcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCC---CHHHHHHHHHhCCccee
Confidence 8853 33 22211 114467777753 24556677776555443
No 332
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.57 E-value=6.7e-14 Score=172.86 Aligned_cols=233 Identities=17% Similarity=0.201 Sum_probs=152.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCC----cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLH----HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~----~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
..+|+.||+|+.|++++||++.++.+..++....++ +.++|+||+|+|||++++.+++.+......+. .+..|
T Consensus 71 ~~pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~---npv~~ 147 (637)
T TIGR00602 71 NEPWVEKYKPETQHELAVHKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWS---NPTLP 147 (637)
T ss_pred cCchHHHhCCCCHHHhcCcHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHh---hhhhh
Confidence 358999999999999999999999999998765433 45899999999999999999999874321111 01111
Q ss_pred CCCcchhhhccCCCccEEEEcc---CCCcCHHHHHHHHHHHhhc--C----ccCCceEEEeccCccCCH---HHHHHHHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDA---ASTRGINEMAQLLEQTIYA--P----INARYKIYVIDEVHMLTH---HAFNAMLK 521 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~---~~~~~~~~i~~ii~~~~~~--p----~~~~~rvviIDE~~~L~~---~~~~~Ll~ 521 (1342)
. ...... .....+.. ......+.+.+++..+... . ..++++||+|||++.+.. ..+..++.
T Consensus 148 ~------~~~~~~-~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~~~~lq~lLr 220 (637)
T TIGR00602 148 D------FQKNDH-KVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRDTRALHEILR 220 (637)
T ss_pred c------cccccc-ccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhhHHHHHHHHH
Confidence 1 111000 00000000 0023346677777766521 1 235788999999965432 23444444
Q ss_pred --hhcCCCCcEEEEEEeCCCC---------CCh------HHHhc--cEEEEEEcCCCHHHHHHHHHHHHHhcCCC-----
Q psy13354 522 --TLEEPPKYIKFILATTEPQ---------KIP------ITVLS--RCIQFNLKKMLHHDIVNNLCYILNKENIK----- 577 (1342)
Q Consensus 522 --~Le~p~~~~vlIl~t~~~~---------kl~------~~L~s--R~~~i~~~~l~~~el~~~l~~~~~~~g~~----- 577 (1342)
+.+.. .+.+|+++++.. .+. +.|++ |+.++.|.|+...++.+.|..+++.++..
T Consensus 221 ~~~~e~~--~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~~ 298 (637)
T TIGR00602 221 WKYVSIG--RCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRVSNISFNPIAPTIMKKFLNRIVTIEAKKNGEKI 298 (637)
T ss_pred HHhhcCC--CceEEEEecCCccccccccccccchhcccCHhHhcccceeEEEeCCCCHHHHHHHHHHHHHhhhhcccccc
Confidence 44443 344566555321 122 68887 66889999999999999999999876532
Q ss_pred -c-chhHHHHHHHhcCCcHHHHHHHHHHHHhhcC--------CCCCHHHHHHHhc
Q psy13354 578 -F-ETSALNLIATGAQGSMRDALSLTDQAINYSS--------EKITLNSMQEMLS 622 (1342)
Q Consensus 578 -i-~~~al~~La~~~~g~lr~a~~~L~kl~~~~~--------~~It~e~V~~~v~ 622 (1342)
+ ++++++.|+..++||+|.|++.|+-++.-.+ ..++..+|.....
T Consensus 299 ~~p~~~~l~~I~~~s~GDiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~~ 353 (637)
T TIGR00602 299 KVPKKTSVELLCQGCSGDIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSKI 353 (637)
T ss_pred ccCCHHHHHHHHHhCCChHHHHHHHHHHHHhcCCccccccccccccHHHhhhccc
Confidence 2 4689999999999999999999987654321 1255566555543
No 333
>PRK06460 hypothetical protein; Provisional
Probab=99.57 E-value=1.1e-13 Score=165.14 Aligned_cols=211 Identities=17% Similarity=0.179 Sum_probs=147.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccch-hhHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLT-HGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s-~~~~~~~~g~~~~~v~~~ 146 (1342)
.+...++++ .++++.|.+.+++++ +|++|+..++.++++|||+|+++...++..+. ....+...|+.+. .++
T Consensus 44 ~p~~~~L~~----~lA~l~g~~~~v~~~-sG~~ai~~~l~al~~~Gd~Vl~~~~~~~~ty~~~~~~~~~~G~~v~--~~~ 116 (376)
T PRK06460 44 NPTVLELTK----KIVELENAEMGVAFS-SGMGAISTTALALLKPGNSVLVHRDMFGRSYRFFTDYLKNWGVNVD--ASN 116 (376)
T ss_pred CccHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEecCCcCcHHHHHHHHHHhhCcEEE--EEC
Confidence 444555555 899999998888887 99999999999999999999987655543332 3344566676444 344
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Div 223 (1342)
.+ +.+.+++.+ ..+++++++++++|| ...++++|+++|+++|++||+|++|+.+.. ..++ ..+|++
T Consensus 117 ~~-----~~~~l~~~~-~~~tklV~l~sp~NPtG~v~d~~~I~~la~~~g~~vivDea~~~~~~-----~~~l~~~~div 185 (376)
T PRK06460 117 PG-----SDNIIEKAK-SKRYDVVFVENITNPLLRVVDITELSKVCKENGSILIVDATFSTPIN-----QKPLELGADIV 185 (376)
T ss_pred CC-----CHHHHHHhc-CCCceEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcCcccc-----CChhhcCCCEE
Confidence 43 233444433 345678777777776 556999999999999999999999875421 1122 236999
Q ss_pred EecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
+.|+||+++|+. +|++++++++++.++.....+..+ ..+..+ ..++ ... ++++.+++++.+++.++.+.|+
T Consensus 186 v~S~sK~l~G~~~~~~G~~~~~~~l~~~l~~~~~~~g~~--~~~~~a--~~~l-~~~-~~l~~r~~~~~~n~~~l~~~L~ 259 (376)
T PRK06460 186 VHSASKFLAGHNDVIAGLAAGYGKLLNVIDQMRRTLGTS--LDPHAA--YLTL-RGI-KTLKIRMDVINRNAEQIAEFLE 259 (376)
T ss_pred EeecceeccCCCCceEEEEecCHHHHHHHHHHHHhcCCC--CCHHHH--HHHH-hch-hhHHHHHHHHHHHHHHHHHHHH
Confidence 999999996654 599999999888887644444332 233222 2222 222 3667788999999999999998
Q ss_pred hC
Q psy13354 301 QR 302 (1342)
Q Consensus 301 ~~ 302 (1342)
+.
T Consensus 260 ~~ 261 (376)
T PRK06460 260 GH 261 (376)
T ss_pred cC
Confidence 75
No 334
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=99.57 E-value=2.6e-13 Score=163.29 Aligned_cols=309 Identities=15% Similarity=0.127 Sum_probs=178.8
Q ss_pred Cceeeeec--CCCCc---HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIAS--ENYTS---LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~--~n~l~---~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++ +++++ |.+.+++.+++.. +. .. ...| .. +...++++++++++|.+++++++ ||++|+
T Consensus 28 ~~id~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~--~~-~~~~-~~----~~~~~l~~~la~~~g~~~~~~~~-sg~~a~ 97 (379)
T TIGR00707 28 EYLDFVAGIAVNSLGHAHPKLVEALKEQLEK-LV--HV-SNLY-YT----EPQEELAEKLVEHSGADRVFFCN-SGAEAN 97 (379)
T ss_pred EEEEcCcchhhccCCCCCHHHHHHHHHHHhh-cc--cc-cccc-CC----HHHHHHHHHHHhhCCCCEEEEeC-CcHHHH
Confidence 44655553 45443 4588888888753 21 11 1112 22 33444555999999988655555 999999
Q ss_pred HHHHHHc---cC----CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCC----CHHHHHHHHHhcCCeEEE
Q psy13354 103 QAVFFSV---LN----PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKI----DYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 103 ~~al~al---~~----pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~i----d~e~Le~~i~~~~~~liv 171 (1342)
..++.++ .. +||+|++++..+.++............ ......+...+... |++.+++.+++ ++++++
T Consensus 98 ~~a~~~~~~~~~~~~~~~~~vi~~~~~yh~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~ 175 (379)
T TIGR00707 98 EAALKLARKYTGDKGKEKKKIIAFENSFHGRTMGALSATGQPK-YQKGFEPLVPGFSYAPYNDIESLKKAIDD-ETAAVI 175 (379)
T ss_pred HHHHHHHHHHhhccCCCCCeEEEECCCcCCccHHHHHhcCChh-hhccCCCCCCCceeeCCCCHHHHHHHhhh-CeeEEE
Confidence 9998865 22 379999877665544333222111000 00000111111111 79999998876 456666
Q ss_pred EcCCCCC-cc-----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCCC-eeEEEE
Q psy13354 172 AGASAYS-QY-----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGPR-GGFILM 241 (1342)
Q Consensus 172 ~~~s~~~-~~-----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~-GG~iv~ 241 (1342)
+++.+++ +. .++++|.++|++||+++|+||+|. +....+.... ... ..|++ ++||+++++. .||+++
T Consensus 176 ~~p~~~~~g~~~~~~~~l~~i~~l~~~~~~~~i~De~~~-~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~riG~~~~ 252 (379)
T TIGR00707 176 VEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQT-GIGRTGKFFAYEHYGIEPDII--TLAKGLGGGVPIGATLA 252 (379)
T ss_pred EEccccCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhhHHhcCCCCCEE--EEcccccCCcccEEEEE
Confidence 6555444 21 248999999999999999999986 2211121110 111 24655 5789994221 299999
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe--eCCCCCeEEEEE
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV--SGGTKSHIILVD 319 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~--~~~~~~~~v~i~ 319 (1342)
++++++.+........++ .+...+.++..++. ... . .++.+++.++++++++.|.+.+.... .....+.++|+.
T Consensus 253 ~~~~~~~~~~~~~~~~~~-~~~~~~~aa~aaL~-~~~-~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~ 328 (379)
T TIGR00707 253 KEEVAEAFTPGDHGSTFG-GNPLACAAALAVLE-VIE-K-ERLLENVKEKGDYFKERLEELGKNYPNKEVRGKGLMLGIE 328 (379)
T ss_pred cHHHHhhhcCCCCCCCCC-CCHHHHHHHHHHHH-HHH-h-hhHHHHHHHHHHHHHHHHHHHHhhCCCCccccCceEEEEE
Confidence 999988887643333333 23444444444443 322 1 24567788888888888876533221 111346678887
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++.. +.++... +.++||.+.+.. .+++|++++..++
T Consensus 329 ~~~~--~~~~~~~-l~~~Gv~v~~~~----------~~~lRi~~~~~~t 364 (379)
T TIGR00707 329 LEAP--CKDIVKK-ALEKGLLVNCAG----------PKVLRFLPPLIIT 364 (379)
T ss_pred ecCc--HHHHHHH-HHHCCcEEeeCC----------CCEEEEECCCcCC
Confidence 7542 3455555 555699998631 2469999876555
No 335
>PRK08776 cystathionine gamma-synthase; Provisional
Probab=99.56 E-value=1.2e-13 Score=165.98 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=145.2
Q ss_pred HHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCHH
Q psy13354 78 AINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDYK 156 (1342)
Q Consensus 78 ~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~e 156 (1342)
+++.++++.|.+++++++ ||++|+..++.++++|||+|+++...|++...... .....|. +++.++.. |++
T Consensus 65 Le~~lA~l~g~~~~v~~~-sG~~Ai~~~l~all~pGD~Vvv~~p~Y~~t~~~~~~~~~~~g~--~v~~v~~~-----d~~ 136 (405)
T PRK08776 65 LGEALAELEGGAGGVITA-TGMGAINLVLNALLQPGDTLVVPHDAYGGSWRLFNALAKKGHF--ALITADLT-----DPR 136 (405)
T ss_pred HHHHHHHHhCCCceEEEc-CHHHHHHHHHHHHhCCCCEEEEccCCchHHHHHHHHHHHhcCc--EEEEECCC-----CHH
Confidence 444899999988887777 89999999999999999999987766655333222 2333444 45544542 889
Q ss_pred HHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCC
Q psy13354 157 KVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRG 233 (1342)
Q Consensus 157 ~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~g 233 (1342)
.+++.+++ +++++++++++|| ...++++|+++|+++|++||+|++|..+.. ..++. .+|++++|++|+++|
T Consensus 137 ~l~~~i~~-~tklV~l~~P~NPtG~v~dl~~I~~la~~~gi~vIvD~a~a~~~~-----~~pl~~gaDivv~S~tK~l~g 210 (405)
T PRK08776 137 SLADALAQ-SPKLVLIETPSNPLLRITDLRFVIEAAHKVGALTVVDNTFLSPAL-----QKPLEFGADLVLHSTTKYING 210 (405)
T ss_pred HHHHhcCc-CCeEEEEECCCCCCCccCCHHHHHHHHHHcCCEEEEECCCccccc-----CCcccccCCEEEecCceeecC
Confidence 99998865 5677777776666 455999999999999999999999875432 22333 379999999999976
Q ss_pred CC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 234 PR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 234 p~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+. ||+++++ +++.+.+....... +...++..+.+.. ..+ ++++.+.++..+|+..+.+.|++..
T Consensus 211 ~~~~~~G~vv~~~~~l~~~l~~~~~~~--g~~~s~~~a~l~~---~gl-~tl~~r~~~~~~na~~la~~L~~~p 278 (405)
T PRK08776 211 HSDVVGGAVVARDAELHQQLVWWANAL--GLTGSPFDAFLTL---RGL-RTLDARLRVHQENADAIAALLDGHA 278 (405)
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHHH---hhh-CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 64 4877774 56666665422221 1112333333322 233 3677888999999999999998753
No 336
>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase. This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.
Probab=99.56 E-value=1e-13 Score=165.97 Aligned_cols=212 Identities=18% Similarity=0.219 Sum_probs=150.2
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++...++++ .+++++|.+.+++++ ||++|+..++.+++++||+|++....+++.+... ..+...|.. +..++
T Consensus 53 ~p~~~~le~----~la~l~g~~~~~~~~-sG~~Ai~~al~al~~~Gd~Vl~~~~~~~~t~~~~~~~~~~~g~~--v~~v~ 125 (380)
T TIGR01325 53 NPTVAAFEE----RIAALEGAERAVATA-TGMSAIQAALMTLLQAGDHVVASRSLFGSTVGFISEILPRFGIE--VSFVD 125 (380)
T ss_pred CchHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEecCCcchHHHHHHHHHHHhCCE--EEEEC
Confidence 344555665 899999998777766 9999999999999999999998776665543332 234556664 44445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++.+++.+.+ ++++|++..+++| ...|+++|.++|+++|++||+|++|+.+... .++. .+|++
T Consensus 126 ~~-----d~~~l~~~i~~-~tklV~le~p~np~g~~~dl~~I~~la~~~gi~livD~a~~~~~~~-----~pl~~g~Div 194 (380)
T TIGR01325 126 PT-----DLNAWEAAVKP-NTKLVFVETPSNPLGELVDIAALAELAHAIGALLVVDNVFATPVLQ-----QPLKLGADVV 194 (380)
T ss_pred CC-----CHHHHHHhcCC-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCCEE
Confidence 43 78899888865 4567777666665 5559999999999999999999998754331 1233 37999
Q ss_pred EecCCccCCCC---CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGP---RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp---~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
++|++|+++|+ .||++++++++++.++..... .+....+..+++ ++ ..+ ..+..+.++..+++..+.+.|+
T Consensus 195 v~S~sK~l~g~g~~~gG~vv~~~~~~~~l~~~~~~--~g~~~~p~~a~~--~l-~~l-~tl~~r~~~~~~~a~~la~~L~ 268 (380)
T TIGR01325 195 VYSATKHIDGQGRVMGGVIAGSEELMAEVAVYLRH--TGPAMSPFNAWV--LL-KGL-ETLSLRMQKQFDSALAIAEWLQ 268 (380)
T ss_pred EeeccceecCCCCeEEEEEEeCHHHHHHHHHHHHh--hCCCCCHHHHHH--HH-hcc-CcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999553 248999998887777653222 233333333322 22 223 2556678889999999999998
Q ss_pred hCC
Q psy13354 301 QRG 303 (1342)
Q Consensus 301 ~~g 303 (1342)
+.+
T Consensus 269 ~~p 271 (380)
T TIGR01325 269 AQP 271 (380)
T ss_pred cCC
Confidence 864
No 337
>PRK09028 cystathionine beta-lyase; Provisional
Probab=99.56 E-value=7e-14 Score=166.30 Aligned_cols=212 Identities=16% Similarity=0.125 Sum_probs=149.0
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|...+++++ ||++|+..++.++++|||+|++++..|++..... ..+...|+. +..++
T Consensus 60 npt~~~Le~----~iA~le~~~~~~~~~-sG~~Ai~~~l~all~~GD~Vvv~~~~Y~~t~~l~~~~l~~~Gi~--v~~v~ 132 (394)
T PRK09028 60 TPTHFAFQA----AIVELEGGAGTALYP-SGAAAISNALLSFLKAGDHLLMVDSCYEPTRDLCDKILKGFGIE--TTYYD 132 (394)
T ss_pred CchHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHhhhhcceE--EEEEC
Confidence 445556666 788888877777777 9999999999999999999998877665544322 233445553 33334
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Div 223 (1342)
.+ +.+.+++++.+ ++++|+++.++|| ...++++|+++|+++|+++++|++|+.+.. ..|++. +|++
T Consensus 133 ~~-----~~e~l~~~l~~-~TklV~lespsNPtg~v~dl~~I~~la~~~g~~lvvD~t~a~p~~-----~~Pl~~GaDiv 201 (394)
T PRK09028 133 PM-----IGEGIRELIRP-NTKVLFLESPGSITMEVQDVPTLSRIAHEHDIVVMLDNTWASPIN-----SRPFEMGVDIS 201 (394)
T ss_pred CC-----CHHHHHHhcCc-CceEEEEECCCCCCCcHHHHHHHHHHHHHcCCEEEEECCcccccc-----CCccccCceEE
Confidence 32 56778888865 4566666666666 345999999999999999999999986543 334553 8999
Q ss_pred EecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
+.|.+||++|+.. |+++.++++.+.+..... ..|...+|..+.+. ..-+. -+.-+.++..+++..+.+.|+
T Consensus 202 v~S~tK~l~Gh~d~~~G~~~~~~~~~~~l~~~~~--~~G~~~~p~~a~l~---~rgl~-TL~lR~~~~~~na~~la~~L~ 275 (394)
T PRK09028 202 IQAATKYIVGHSDVMLGTATANEKHWDQLREHSY--LMGQCTSPDDVYLA---MRGLR-TLGVRLAQHEKNALKVANWLA 275 (394)
T ss_pred EEeCCeEecCCCCEEEEEEECCHHHHHHHHHHHH--hcCCCCCHHHHHHH---HcccC-cHHHHHHHHHHHHHHHHHHHh
Confidence 9999999977643 888777776666653211 22444444444322 22222 566778999999999999999
Q ss_pred hCC
Q psy13354 301 QRG 303 (1342)
Q Consensus 301 ~~g 303 (1342)
+..
T Consensus 276 ~~p 278 (394)
T PRK09028 276 TRP 278 (394)
T ss_pred cCC
Confidence 864
No 338
>PRK06893 DNA replication initiation factor; Validated
Probab=99.56 E-value=6.6e-14 Score=155.36 Aligned_cols=202 Identities=12% Similarity=0.140 Sum_probs=139.6
Q ss_pred CCCCccccccchhhH--HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 386 RPSNFNTLIGQNHIS--KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~--~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
.+.+|++.+++++.. ..+.+.... ...+.++||||+|+|||++++++++++...+.
T Consensus 11 ~~~~fd~f~~~~~~~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~--------------------- 68 (229)
T PRK06893 11 DDETLDNFYADNNLLLLDSLRKNFID-LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQR--------------------- 68 (229)
T ss_pred CcccccccccCChHHHHHHHHHHhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCC---------------------
Confidence 456899998766542 333333332 33356899999999999999999999753210
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--HHHHHHHHHhhcCCC--CcEEEEEEeCCC
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--HHAFNAMLKTLEEPP--KYIKFILATTEP 539 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--~~~~~~Ll~~Le~p~--~~~vlIl~t~~~ 539 (1342)
..-|+.++.... ...++++. ..+..+++|||++.+. .+....|+.+++.-. ...++|++++..
T Consensus 69 ---~~~y~~~~~~~~----~~~~~~~~------~~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~ 135 (229)
T PRK06893 69 ---TAIYIPLSKSQY----FSPAVLEN------LEQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCS 135 (229)
T ss_pred ---CeEEeeHHHhhh----hhHHHHhh------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCC
Confidence 011222221110 11122222 2345699999999874 233345656554321 234556666653
Q ss_pred C----CChHHHhccEE---EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh--c-C
Q psy13354 540 Q----KIPITVLSRCI---QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY--S-S 609 (1342)
Q Consensus 540 ~----kl~~~L~sR~~---~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~--~-~ 609 (1342)
. ...+.+.||+. ++++.+|+.++...++++.+..+++.++++++++|+++++||+|.+.+.++++... . +
T Consensus 136 p~~l~~~~~~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~ 215 (229)
T PRK06893 136 PHALSIKLPDLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHTLFDALDLLDKASLQAQ 215 (229)
T ss_pred hHHccccchhHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhcC
Confidence 3 23479999984 89999999999999999999999999999999999999999999999999987533 2 4
Q ss_pred CCCCHHHHHHHhc
Q psy13354 610 EKITLNSMQEMLS 622 (1342)
Q Consensus 610 ~~It~e~V~~~v~ 622 (1342)
..||.+.|++++.
T Consensus 216 ~~it~~~v~~~L~ 228 (229)
T PRK06893 216 RKLTIPFVKEILG 228 (229)
T ss_pred CCCCHHHHHHHhc
Confidence 5699999998764
No 339
>PRK08727 hypothetical protein; Validated
Probab=99.56 E-value=9.4e-14 Score=154.47 Aligned_cols=209 Identities=14% Similarity=0.211 Sum_probs=144.3
Q ss_pred HHhhccCC-CCccccccc-hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 380 VLARKYRP-SNFNTLIGQ-NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 380 ~l~~k~~p-~~f~~lvGq-~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+|.-.++| .+|++.++. ......+.... .+...+.++|+|++|+|||+++++++..+...+
T Consensus 7 ~l~~~~~~~~~f~~f~~~~~n~~~~~~~~~-~~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~---------------- 69 (233)
T PRK08727 7 PLALRYPSDQRFDSYIAAPDGLLAQLQALA-AGQSSDWLYLSGPAGTGKTHLALALCAAAEQAG---------------- 69 (233)
T ss_pred cccCCCCCcCChhhccCCcHHHHHHHHHHH-hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcC----------------
Confidence 44444444 378887654 44444444333 344456699999999999999999999875321
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--HHHHHHHHHhhcCCC-CcEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--HHAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--~~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
. .+..++... ....+.+.++.. .+..+|+|||++.+. ......|+++++.-. ....+|+
T Consensus 70 --------~--~~~y~~~~~--~~~~~~~~~~~l------~~~dlLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ 131 (233)
T PRK08727 70 --------R--SSAYLPLQA--AAGRLRDALEAL------EGRSLVALDGLESIAGQREDEVALFDFHNRARAAGITLLY 131 (233)
T ss_pred --------C--cEEEEeHHH--hhhhHHHHHHHH------hcCCEEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEE
Confidence 1 112222211 111223333332 233599999999885 334455666655321 1334677
Q ss_pred EeCCCC----CChHHHhcc---EEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSR---CIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR---~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++.+. .+.+.++|| |.++.|++|+.+++..++++++..+|+.++++++++|++.++||+|.+++.|+++..+
T Consensus 132 ts~~~p~~l~~~~~dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd~r~~l~~L~~l~~~ 211 (233)
T PRK08727 132 TARQMPDGLALVLPDLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGERELAGLVALLDRLDRE 211 (233)
T ss_pred ECCCChhhhhhhhHHHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 776543 346899999 7899999999999999999999999999999999999999999999999999887642
Q ss_pred ---cCCCCCHHHHHHHhcc
Q psy13354 608 ---SSEKITLNSMQEMLSI 623 (1342)
Q Consensus 608 ---~~~~It~e~V~~~v~~ 623 (1342)
.+..||.+.+++++..
T Consensus 212 ~~~~~~~it~~~~~~~l~~ 230 (233)
T PRK08727 212 SLAAKRRVTVPFLRRVLEE 230 (233)
T ss_pred HHHhCCCCCHHHHHHHHhh
Confidence 3456999999988754
No 340
>PRK07050 cystathionine beta-lyase; Provisional
Probab=99.55 E-value=2e-13 Score=163.80 Aligned_cols=212 Identities=18% Similarity=0.153 Sum_probs=148.0
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...+|++ .++++.|.+.+++++ ||++|+..++.++++|||+|+++...|++....+ ......|+ ++..+
T Consensus 63 ~~pt~~~Le~----~lA~l~g~~~~l~~~-sgt~Ai~~~l~al~~~GD~Vl~~~~~y~~~~~~~~~~~~~~Gi--~v~~v 135 (394)
T PRK07050 63 ATPTSLALAQ----RLAEIEGGRHALLQP-SGLAAISLVYFGLVKAGDDVLIPDNAYGPNRDHGEWLARDFGI--TVRFY 135 (394)
T ss_pred CCHHHHHHHH----HHHHHhCCCeEEEec-cHHHHHHHHHHHHhCCCCEEEEecCCcccHHHHHHHHHHhcCe--EEEEE
Confidence 3454555555 899999988777776 9999999999999999999999887777655433 23455566 44444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.. +.+.+++.+++ ++++|++++++++ ...++++|+++|+++|++||+|++|+.+.... ++. .+|+
T Consensus 136 d~~-----~~~~l~~~i~~-~tklV~le~p~Np~~~~~di~~I~~ia~~~gi~livD~a~a~~~~~~-----~l~~GaDi 204 (394)
T PRK07050 136 DPL-----IGAGIADLIQP-NTRLIWLEAPGSVTMEVPDVPAITAAARARGVVTAIDNTYSAGLAFK-----PFEHGVDI 204 (394)
T ss_pred CCC-----CHHHHHHhcCC-CCeEEEEECCCCCCccHhhHHHHHHHHHHcCCEEEEECCcccccccC-----HHHcCCeE
Confidence 432 45778888765 4577777766666 55599999999999999999999998765422 232 3699
Q ss_pred EEecCCccCCCCC---eeEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++.|++|+++|.. ||++++ ++++.+.++..... .|....+..+ ..++ ..+. .+..+.++..+++..+.+.
T Consensus 205 ~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~--~G~~~~~~~a--~l~l-r~l~-tl~~Rl~~~~~~a~~la~~ 278 (394)
T PRK07050 205 SVQALTKYQSGGSDVLMGATITADAELHAKLKLARMR--LGIGVSADDC--SLVL-RGLP-SLQVRLAAHDRSALEVAEW 278 (394)
T ss_pred EEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHh--cCCCCCHHHH--HHHH-cCCC-cHHHHHHHHHHHHHHHHHH
Confidence 9999999996543 577776 45777776543222 1222233222 2222 2232 4555778888999999999
Q ss_pred HHhC
Q psy13354 299 LDQR 302 (1342)
Q Consensus 299 L~~~ 302 (1342)
|++.
T Consensus 279 L~~~ 282 (394)
T PRK07050 279 LKAR 282 (394)
T ss_pred HHhC
Confidence 9885
No 341
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.55 E-value=1.2e-13 Score=156.66 Aligned_cols=190 Identities=17% Similarity=0.282 Sum_probs=136.7
Q ss_pred CccccccchhhHHHHHHHHH----------cC----CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 389 NFNTLIGQNHISKSLINALD----------KK----RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~----------~~----~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
.+++++|++.+++.+.+.+. .| .....++|+||||||||++|+.+++.+...+.. ++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~--------~~- 74 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVL--------SK- 74 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcc--------cC-
Confidence 35789999999877764431 11 123458999999999999999999988532100 01
Q ss_pred CCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------HHHHHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------HHAFNAML 520 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------~~~~~~Ll 520 (1342)
..+++++.++. .....+.++++.+. ..|++|||+|.|. .+.++.|+
T Consensus 75 -------------~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-------~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll 134 (261)
T TIGR02881 75 -------------GHLIEVERADLVGEYIGHTAQKTREVIKKAL-------GGVLFIDEAYSLARGGEKDFGKEAIDTLV 134 (261)
T ss_pred -------------CceEEecHHHhhhhhccchHHHHHHHHHhcc-------CCEEEEechhhhccCCccchHHHHHHHHH
Confidence 11222222111 11233455554431 2499999999875 45678899
Q ss_pred HhhcCCCCcEEEEEEeCCCC-----CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh-----
Q psy13354 521 KTLEEPPKYIKFILATTEPQ-----KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG----- 589 (1342)
Q Consensus 521 ~~Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~----- 589 (1342)
+.+++...++++|+++...+ .+.+++.+|+ ..+.|++++.+++.+++++.++..+..++++++..|++.
T Consensus 135 ~~~e~~~~~~~vila~~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~ 214 (261)
T TIGR02881 135 KGMEDNRNEFVLILAGYSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVD 214 (261)
T ss_pred HHHhccCCCEEEEecCCcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHH
Confidence 99998877887777754322 3567999999 789999999999999999999999999999999998654
Q ss_pred -----cCCcHHHHHHHHHHHHhh
Q psy13354 590 -----AQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 590 -----~~g~lr~a~~~L~kl~~~ 607 (1342)
..||.|.+.+.++++...
T Consensus 215 ~~~~~~~gn~R~~~n~~e~a~~~ 237 (261)
T TIGR02881 215 QLSSREFSNARYVRNIIEKAIRR 237 (261)
T ss_pred hccCCCCchHHHHHHHHHHHHHH
Confidence 358999999999986643
No 342
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=99.55 E-value=1.7e-13 Score=162.43 Aligned_cols=242 Identities=17% Similarity=0.188 Sum_probs=161.8
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
+++...+||+ .++++.|.+++++++ ||++|+.+++. ++++||+|+++...+++...........+ ++..
T Consensus 52 ~~p~~~~le~----~lA~leg~~~~v~~~-sG~aAi~~~l~-~l~~GD~VI~~~~~yg~~~~~~~~~~~~~-~~~~---- 120 (364)
T PRK07269 52 KNPTRAKLEE----TLAAIESADYALATS-SGMSAIVLAFS-VFPVGSKVVAVRDLYGGSFRWFNQQEKEG-RFHF---- 120 (364)
T ss_pred CCccHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHH-HhCCCCEEEEecCCcCchHHHHHHHHhcC-cEEE----
Confidence 4566667777 899999988888887 99999999984 67999999998877766544332221111 1111
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
++..|++++++++++ ++++|+++.++|| ...++++|+++|+++|+++|+|+++..+.. ..++. .+|++
T Consensus 121 ---~~~~d~~~l~~~i~~-~TklV~lesP~NPtg~~~di~~I~~la~~~gi~vvvD~t~~~~~~-----~~pl~~gaDiv 191 (364)
T PRK07269 121 ---TYANTEEELIAAIEE-DTDIVYIETPTNPLMVEFDIEKVAKLAHAKGAKVIVDNTFYSPIY-----QRPIELGADIV 191 (364)
T ss_pred ---EecCCHHHHHHhcCc-CceEEEEECCCCCCCeeeCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhhCCcEE
Confidence 123589999999876 4567766666666 445999999999999999999999765432 22333 48999
Q ss_pred EecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|.. ||+++++ +++.+.++.... ..|...++..+++.... + ..+..+.++..+++..+.+.|
T Consensus 192 v~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~--~~G~~~s~~~a~l~~~~---L-~tL~~r~~~~~~na~~~a~~L 265 (364)
T PRK07269 192 LHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLN--TTGAVLSPFDSYLLMRG---L-KTLSLRMERSTANAQEVVAFL 265 (364)
T ss_pred EecCceeccCCCcccceEEEeCcHHHHHHHHHHHH--HhCCCCCHHHHHHHHcC---C-CcHHHHHHHHHHHHHHHHHHH
Confidence 999999996533 5988875 466666653211 22333344544433222 2 256677889999999999999
Q ss_pred HhCC-c-EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 300 DQRG-I-RIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 300 ~~~g-~-~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
++.. + .+..++ .+.++.+.+.. .+.+.++++.-.+
T Consensus 266 ~~~p~v~~v~ypg-~gg~~sf~~~~----~~~~~~f~~~l~~ 302 (364)
T PRK07269 266 KKSPAVKEVLYTG-KGGMISFKVAD----ETRIPHILNSLKV 302 (364)
T ss_pred HhCCCccEEeCCC-cCcEEEEEECC----HHHHHHHHHhCCc
Confidence 9864 3 343333 34556666542 3445566655333
No 343
>PRK08114 cystathionine beta-lyase; Provisional
Probab=99.55 E-value=5.7e-13 Score=157.95 Aligned_cols=249 Identities=13% Similarity=0.143 Sum_probs=170.3
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEE
Q psy13354 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSIC 144 (1342)
Q Consensus 66 ~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~ 144 (1342)
.+++....||+ .++++-|.+.+++++ ||+.|+.+++.+++++||+|+++...|++..... ..+...|+.+..+
T Consensus 59 ~~nPt~~~le~----~la~LEg~~~a~~~~-SGmaAi~~~~~~ll~~GD~Vv~~~~~Yg~t~~l~~~~l~~~Gi~v~~v- 132 (395)
T PRK08114 59 RGTLTHFSLQE----AMCELEGGAGCALYP-CGAAAVANAILAFVEQGDHVLMTGTAYEPTQDFCSKILSKLGVTTTWF- 132 (395)
T ss_pred CCChhHHHHHH----HHHHHhCCCeEEEEh-HHHHHHHHHHHHHcCCCCEEEEeCCCcHHHHHHHHHHHHhcCcEEEEE-
Confidence 35666777777 888899999999999 8999999999999999999998776666554443 3345567754444
Q ss_pred ecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcC--CEEEEEcccchhhhhcCCCCCCCCC-
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNIN--SYFMVDMAHYAGLIAAGEYPNPVPF- 219 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~g--i~LIvDea~~~g~~~~~~~~~~l~~- 219 (1342)
+.. |.+.++++++++ +++|++..+.++ ...|+++|+++|+++| +++++|.+++.+.. ..+++.
T Consensus 133 -d~~-----d~~~l~~~l~~~-TrlV~~EtpsNp~~~v~DI~~Ia~ia~~~g~g~~lvVDnT~a~p~~-----~~pl~~G 200 (395)
T PRK08114 133 -DPL-----IGADIAKLIQPN-TKVVFLESPGSITMEVHDVPAIVAAVRSVNPDAVIMIDNTWAAGVL-----FKALDFG 200 (395)
T ss_pred -CCC-----CHHHHHHhcCCC-ceEEEEECCCCCCCEeecHHHHHHHHHHhCCCCEEEEECCCccccc-----cCHHHcC
Confidence 432 788999998764 466665544444 4559999999999984 99999999877644 334443
Q ss_pred CcEEEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q psy13354 220 ADFITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296 (1342)
Q Consensus 220 ~Divv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~ 296 (1342)
+|+++.|.+|+++|+. +|+++.+++..+.++... ...|...+|..+.+ . ..-++ -+.-+.++..+++..+.
T Consensus 201 aDivv~S~tKyl~Ghsdv~~G~v~~~~~~~~~l~~~~--~~~G~~~~p~~a~l--~-~rgl~-TL~lR~~~~~~na~~va 274 (395)
T PRK08114 201 IDISIQAGTKYLVGHSDAMIGTAVANARCWEQLRENS--YLMGQMVDADTAYM--T-SRGLR-TLGVRLRQHEESSLKVA 274 (395)
T ss_pred CcEEEEcCcccccCCCcceeEEEEcCHHHHHHHHHHH--HhccCCCCHHHHHH--H-HcCCC-cHHHHHHHHHHHHHHHH
Confidence 8999999999997764 388887776655554321 12344434444432 2 22222 45667899999999999
Q ss_pred HHHHhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 297 KILDQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 297 ~~L~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
+.|++.. +. +..++ ..+.++.+.+++. .+.+.+.++++.-.+
T Consensus 275 ~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~-~~~~~~~~f~~~l~l 333 (395)
T PRK08114 275 EWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKK-LTDEQLANYLDNFSL 333 (395)
T ss_pred HHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCc-ccHHHHHHHHHhCCc
Confidence 9999864 32 22221 1234666776532 124556667666444
No 344
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.55 E-value=4.4e-13 Score=160.49 Aligned_cols=241 Identities=15% Similarity=0.145 Sum_probs=154.3
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCC--CCCCcccCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID--GNGGITSQP 452 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~--~~~~~~~~~ 452 (1342)
..+|...|.|. +++|++..++.|...+.. +..++.++++||+|+|||++++.+.+.+...... ......+.+
T Consensus 5 ~~~l~~~~~p~---~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in 81 (365)
T TIGR02928 5 RDLLEPDYVPD---RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVN 81 (365)
T ss_pred hhhCCCCCCCC---CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEE
Confidence 34677789995 689999999888888753 5566679999999999999999999988532110 000122333
Q ss_pred CCCCcchhhhccCCCccEE--EEccC-CCcCH-HHHHHHHHHHhhcCccCCceEEEeccCccCCH---HHHHHHHHh--h
Q psy13354 453 CGKCSVCVKIDNGCFMDYI--EMDAA-STRGI-NEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---HAFNAMLKT--L 523 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~--~i~~~-~~~~~-~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---~~~~~Ll~~--L 523 (1342)
|..+.+-..+.......+. ..... ..... +.+..+.+.+. ..+++.||+|||+|.+.. +....|++. .
T Consensus 82 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~ 158 (365)
T TIGR02928 82 CQILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELN---ERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSN 158 (365)
T ss_pred CCCCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEECchhhhccCCcHHHHhHhccccc
Confidence 4333221111100000000 00000 00011 12233333322 123456899999999942 234455555 2
Q ss_pred cCC-CCcEEEEEEeCCCC---CChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHh--cCCCcchhHHHHHHHh---cCC
Q psy13354 524 EEP-PKYIKFILATTEPQ---KIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNK--ENIKFETSALNLIATG---AQG 592 (1342)
Q Consensus 524 e~p-~~~~vlIl~t~~~~---kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~--~g~~i~~~al~~La~~---~~g 592 (1342)
.+. ...+.+|+++|.++ .+.+.+.+|+ ..+.|+|++.+++..++..+++. .+..+++++++++++. +.|
T Consensus 159 ~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~G 238 (365)
T TIGR02928 159 GDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHG 238 (365)
T ss_pred cCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcC
Confidence 222 35788899998875 4667888887 57999999999999999999873 2345888888876654 579
Q ss_pred cHHHHHHHHHHHHhhcC----CCCCHHHHHHHhccC
Q psy13354 593 SMRDALSLTDQAINYSS----EKITLNSMQEMLSII 624 (1342)
Q Consensus 593 ~lr~a~~~L~kl~~~~~----~~It~e~V~~~v~~~ 624 (1342)
|+|.+++.|+++...+. ..||.++|++++...
T Consensus 239 d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 239 DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKI 274 (365)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 99999999999876542 359999999887654
No 345
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=2e-13 Score=151.36 Aligned_cols=207 Identities=18% Similarity=0.274 Sum_probs=154.9
Q ss_pred hccCCCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCccc
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITS 450 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~ 450 (1342)
.+-...+++++=|.+..++++++++.-. ..|.++|||||||||||.+|+++|++.++
T Consensus 143 ~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~A----------- 211 (406)
T COG1222 143 EEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDA----------- 211 (406)
T ss_pred ccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCc-----------
Confidence 3344558999999999999999998421 56789999999999999999999998875
Q ss_pred CCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------H
Q psy13354 451 QPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------H 513 (1342)
Q Consensus 451 ~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~ 513 (1342)
.|+.+.++. ..|..-+++++..+... .+.||||||+|.+. .
T Consensus 212 ------------------tFIrvvgSElVqKYiGEGaRlVRelF~lArek----aPsIIFiDEIDAIg~kR~d~~t~gDr 269 (406)
T COG1222 212 ------------------TFIRVVGSELVQKYIGEGARLVRELFELAREK----APSIIFIDEIDAIGAKRFDSGTSGDR 269 (406)
T ss_pred ------------------eEEEeccHHHHHHHhccchHHHHHHHHHHhhc----CCeEEEEechhhhhcccccCCCCchH
Confidence 366665542 23445677777766543 45699999999883 2
Q ss_pred HHHHHHHHhhc-----CCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHH
Q psy13354 514 HAFNAMLKTLE-----EPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585 (1342)
Q Consensus 514 ~~~~~Ll~~Le-----~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~ 585 (1342)
+.+..++++|. ++..++.+|++||+++-++|+|++ |+ ..++|+.|+.+...++++-+.++..+. ++-.++.
T Consensus 270 EVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~ 348 (406)
T COG1222 270 EVQRTMLELLNQLDGFDPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLEL 348 (406)
T ss_pred HHHHHHHHHHHhccCCCCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHH
Confidence 34555666654 356799999999999999999996 44 689999999999999999888776653 3345888
Q ss_pred HHHhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 586 IATGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 586 La~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
|++.++| +-.++.+.+..+-.++ ...||.+|..+++..
T Consensus 349 la~~~~g~sGAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~K 391 (406)
T COG1222 349 LARLTEGFSGADLKAICTEAGMFAIRERRDEVTMEDFLKAVEK 391 (406)
T ss_pred HHHhcCCCchHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHH
Confidence 8888765 4444555555555554 234999988877743
No 346
>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase. This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.
Probab=99.53 E-value=2.4e-13 Score=162.48 Aligned_cols=212 Identities=18% Similarity=0.196 Sum_probs=147.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~ 146 (1342)
++....+++ .++++.|.+.+++++ ||++|+..++.+++++||+|+++...+++....... ....+.. +..++
T Consensus 50 ~p~~~~le~----~lA~l~g~~~v~~~~-gg~~Ai~~~l~all~~GD~Vl~~~p~y~~~~~~~~~~~~~~~~~--v~~~d 122 (382)
T TIGR02080 50 NPTRDLLQQ----ALAELEGGAGAVVTN-TGMSAIHLVTTALLGPDDLLVAPHDCYGGTYRLLNALAKKGCFR--VLFVD 122 (382)
T ss_pred CchHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHHHHHcCCCCEEEEcCCCcHHHHHHHHHHHhhcCeE--EEEEC
Confidence 444555666 899999977766666 999999999999999999999888777654443332 2333343 33223
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
. .|++.+++++++ ++++|+++.++|| ...++++|+++|+++|++||+|++|..+... .++. .+|++
T Consensus 123 ~-----~d~~~l~~ai~~-~tklV~l~~p~NPtG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~-----~pl~~gaDiv 191 (382)
T TIGR02080 123 Q-----GDEQALRAALAQ-KPKLVLIETPSNPLLRVVDIAKICHLAKAVGAVVVVDNTFLSPALQ-----NPLALGADLV 191 (382)
T ss_pred C-----CCHHHHHHhcCc-CceEEEEECCCCCCCEecCHHHHHHHHHHcCCEEEEECCCcccccC-----CchhhCCCEE
Confidence 2 278999998875 4677777776666 4459999999999999999999999765431 1222 36999
Q ss_pred EecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|+||+++|+. +|+++++ +++.+.+..... ..+...++..+.+. +. .++ .+..+.++..+|+..+.++|
T Consensus 192 v~S~sK~l~G~~~~~~G~i~~~~~~~~~~l~~~~~--~~g~~~sp~~a~l~--lr-~l~-tl~~R~~~~~~na~~~a~~L 265 (382)
T TIGR02080 192 LHSCTKYLNGHSDVIAGAVIAKDPQVAEELAWWAN--NLGVTGGAFDSYLT--LR-GLR-TLVARMRLQQRNAQAIVEYL 265 (382)
T ss_pred EeecceeccCCCCceeEEEEeCCHHHHHHHHHHHH--ccCCCCCHHHHHHH--Hc-ccc-hHHHHHHHHHHHHHHHHHHH
Confidence 999999997655 4888774 566666654322 22333344444433 22 222 45566788899999999999
Q ss_pred HhCC
Q psy13354 300 DQRG 303 (1342)
Q Consensus 300 ~~~g 303 (1342)
+..+
T Consensus 266 ~~~p 269 (382)
T TIGR02080 266 QTQP 269 (382)
T ss_pred HhCC
Confidence 8754
No 347
>PRK07582 cystathionine gamma-lyase; Validated
Probab=99.53 E-value=7.6e-13 Score=157.58 Aligned_cols=244 Identities=18% Similarity=0.177 Sum_probs=157.0
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+.+....|++ .++++. .+++++++ ||++|+..++.+++++||+|+++...+++...... .+...|+ +++.+
T Consensus 49 ~~p~~~~Le~----~lA~l~-~~~~v~~~-sG~~Ai~~~l~all~~Gd~Vl~~~~~y~~~~~~~~~~l~~~G~--~v~~v 120 (366)
T PRK07582 49 SNPTWRALEA----ALGELE-GAEALVFP-SGMAAITAVLRALLRPGDTVVVPADGYYQVRALAREYLAPLGV--TVREA 120 (366)
T ss_pred CCccHHHHHH----HHHHHc-CCCEEEEC-CHHHHHHHHHHHhcCCCCEEEEeCCCcHhHHHHHHHHHhcCeE--EEEEE
Confidence 3455666777 777777 45676766 99999999999999999999987755544332221 2344565 45555
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.++++ + .+.+ +.++++++.+++| ...++++|+++|+++|+++++|++|..... . .+++ .+|+
T Consensus 121 ~~~~~~----~----~~~~-~t~lV~le~p~NPtg~v~di~~I~~~a~~~g~~lvVD~t~~~~~~---~--~p~~~g~Di 186 (366)
T PRK07582 121 PTAGMA----E----AALA-GADLVLAETPSNPGLDVCDLAALAAAAHAAGALLVVDNTTATPLG---Q--RPLELGADL 186 (366)
T ss_pred CCCChH----H----Hhcc-CceEEEEECCCCCCCCccCHHHHHHHHHHcCCEEEEECCCCCccc---c--CchhcCCcE
Confidence 554221 1 2222 4567777777776 355999999999999999999999853211 1 1222 3699
Q ss_pred EEecCCccCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|+||+++|+.| ||++++ +++.+.+..... ..+...++..+.+.... +. .+..+.++..+++..+.+.
T Consensus 187 vv~S~sK~l~G~~g~~~G~v~~~~~~l~~~l~~~~~--~~g~~~~~~~a~l~~r~---l~-tl~~R~~~~~~na~~la~~ 260 (366)
T PRK07582 187 VVASDTKALTGHSDLLLGYVAGRDPELMAAVERWRL--LAGAIPGPFEAWLAHRS---LG-TLGLRFARQCANALAVAEL 260 (366)
T ss_pred EEecccccccCCCCeeEEEEEcCcHHHHHHHHHHHH--HhCCCCCHHHHHHHHhc---cc-cHHHHHHHHHHHHHHHHHH
Confidence 99999999977665 998875 567666654322 11222233433322222 22 4455678889999999999
Q ss_pred HHhCC-cE-EeeCC----C-----------CCeEEEEEccCCCCCHHHHHHHHHHCCceee
Q psy13354 299 LDQRG-IR-IVSGG----T-----------KSHIILVDLRNKKITGKIAESILESANIICN 342 (1342)
Q Consensus 299 L~~~g-~~-~~~~~----~-----------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~ 342 (1342)
|++.. +. +..++ + .+.++.+.++ +.+.+.++++..++...
T Consensus 261 L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~----~~~~~~~~~~~l~~~~~ 317 (366)
T PRK07582 261 LAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELA----DAAAAERFVAASRLVVA 317 (366)
T ss_pred HHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeC----CHHHHHHHHHhCCccee
Confidence 99853 32 22111 1 2446667765 24667778888777665
No 348
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.53 E-value=2.2e-13 Score=163.39 Aligned_cols=215 Identities=18% Similarity=0.198 Sum_probs=147.7
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++++.|..++++++ ||+.|+.+++.+++++||+|+++...|++...... .+...|+.+.++
T Consensus 59 ~nPtv~~lE~----~la~leg~~~av~~~-SG~aAi~~al~all~~GD~VI~~~~~Y~~T~~~~~~~l~~~Gi~v~~v-- 131 (432)
T PRK06702 59 GNPTLAAFEQ----KLAELEGGVGAVATA-SGQAAIMLAVLNICSSGDHLLCSSTVYGGTFNLFGVSLRKLGIDVTFF-- 131 (432)
T ss_pred CCcHHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHhcCCCCEEEECCCchHHHHHHHHHHHHHCCCEEEEE--
Confidence 3566677777 999999999888877 99999999999999999999998877765544432 246667744444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+. .+|++.+++++++++ ++|++..+.+| ...|+++|+++|+++|+++|+|++++...+ ..+++. +|+
T Consensus 132 d~----~~d~~~l~~~I~~~T-k~I~~e~pgnP~~~v~Di~~I~~iA~~~gi~livD~T~~tP~~-----~~pl~~GADI 201 (432)
T PRK06702 132 NP----NLTADEIVALANDKT-KLVYAESLGNPAMNVLNFKEFSDAAKELEVPFIVDNTLATPYL-----CQAFEHGANI 201 (432)
T ss_pred CC----CCCHHHHHHhCCcCC-eEEEEEcCCCccccccCHHHHHHHHHHcCCEEEEECCCCchhh-----CChhhcCCCE
Confidence 32 368999999998755 45555455555 444999999999999999999998753322 334543 899
Q ss_pred EEecCCccCCCCCe---eEEEEech----------hH---------------------HHHhhccCCccccCCcHHHHHH
Q psy13354 223 ITSTTHKSLRGPRG---GFILMKKK----------YK---------------------KIINSAVFPGIQGGPLMHVIAA 268 (1342)
Q Consensus 223 vv~S~sK~l~gp~G---G~iv~~~~----------l~---------------------~~l~~~~~~~~~~~~~~~~~~A 268 (1342)
++.|++|+++|..+ |+++.... +. ...+.. ....++..++|..+.
T Consensus 202 vv~S~TKy~~Ghsd~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~sp~~a~ 280 (432)
T PRK06702 202 IVHSTTKYIDGHASSLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKARVQ-LLRDYGNCMSPFNAY 280 (432)
T ss_pred EEEccccccCCCcceeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHHHH-HHHHccCCCCHHHHH
Confidence 99999999966544 76664321 11 001100 011223344444444
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 269 KAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 269 aa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+... .++ .++.+.++..+|+..+.+.|++.+
T Consensus 281 l~~r---gL~-Tl~lR~~r~~~Na~~la~~L~~~p 311 (432)
T PRK06702 281 ISNI---GLE-TLHLRMERHSENALAVAKWLADHE 311 (432)
T ss_pred HHHh---ccC-cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3322 222 566778888999999999999864
No 349
>PRK07049 methionine gamma-lyase; Validated
Probab=99.53 E-value=1.9e-12 Score=156.67 Aligned_cols=249 Identities=17% Similarity=0.187 Sum_probs=166.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+++++++ ||++|+..++.+++++||+|++....|+++.... ..+...|+ +++.++
T Consensus 82 ~Pt~~~Le~----~lA~leg~~~~iv~~-sG~~Ai~~~l~al~~~Gd~Vv~~~p~Y~~~~~~~~~~l~~~Gi--~~v~~~ 154 (427)
T PRK07049 82 HPNSEIVED----RLAVYEGAESAALFS-SGMSAIATTLLAFVRPGDVILHSQPLYGGTETLLAKTFRNFGV--GAVGFA 154 (427)
T ss_pred CcCHHHHHH----HHHHHhCCCcEEEEc-cHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHhcCc--EEEEEe
Confidence 455566666 899999988877777 9999999999999999999998887776654432 22345565 444443
Q ss_pred CCCCCCCCHHHHHHHHHh----cCCeEEEEcCCCCC--cccCHHHHHHHHHH------cCCEEEEEcccchhhhhcCCCC
Q psy13354 147 LNKKEKIDYKKVEYLAKK----NKPKLIIAGASAYS--QYIDFERFYHIAKN------INSYFMVDMAHYAGLIAAGEYP 214 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~----~~~~liv~~~s~~~--~~~~l~~I~~la~~------~gi~LIvDea~~~g~~~~~~~~ 214 (1342)
.. .|++.+++.+.+ .+++++++++++|| ...++++|.++|+. ++++||+|+++..... .
T Consensus 155 ~~----~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d~~~l~~la~~~~~~~~~~~~vvvDety~~~~~-----~ 225 (427)
T PRK07049 155 DG----LSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVDVAAVRRVADAIEARQGHRPIIACDNTLLGPVF-----Q 225 (427)
T ss_pred CC----CCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccCHHHHHHHHHHhhhcccCCCEEEEECCcccccc-----C
Confidence 21 367778776642 35678888777777 44589999999988 8999999999653322 1
Q ss_pred CCCC-CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHH
Q psy13354 215 NPVP-FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290 (1342)
Q Consensus 215 ~~l~-~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~ 290 (1342)
.++. .+|+++.|+||+++|..| ||+++++++++.+......+ +...++..+.++ ...+. .+..++++..+
T Consensus 226 ~pl~~g~divv~S~SK~~gG~~glr~G~vv~~~~l~~~l~~~~~~~--g~~ls~~~a~l~---~r~L~-tl~~R~~~~~~ 299 (427)
T PRK07049 226 KPLEHGADLSVYSLTKYVGGHSDLVAGAVLGRKALIRQVRALRSAI--GTQLDPHSCWML---GRSLE-TLVLRMERANR 299 (427)
T ss_pred CccccCCCEEEEcCceeecCCCCcEEEEEECCHHHHHHHHHHHHhc--CCCCCHHHHHHH---HcCCC-hHHHHHHHHHH
Confidence 2222 369999999999965555 99999998888887643333 333333333322 22222 45566778899
Q ss_pred HHHHHHHHHHhC-CcEEee-CCC-----------------CCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 291 NAKILSKILDQR-GIRIVS-GGT-----------------KSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 291 ~a~~l~~~L~~~-g~~~~~-~~~-----------------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
++..+.+.|++. ++..+. ++. .+.++.+.+.+ +.+.+.++++.-.++.
T Consensus 300 ~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~---~~~~~~~f~~~l~l~~ 366 (427)
T PRK07049 300 NARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKG---GQAAAFRFLNALQIFK 366 (427)
T ss_pred HHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcC---CHHHHHHHHHcCcccE
Confidence 999999999986 343222 211 12356666653 2455667776655544
No 350
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.53 E-value=3.9e-13 Score=168.57 Aligned_cols=228 Identities=24% Similarity=0.320 Sum_probs=159.5
Q ss_pred HHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 377 IKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 377 ~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
....++..+||++|++++||+..++.+.+.+..+... .++|+||+|+|||++|+.+.+........ ++.
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~~~~~-~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~--------~~~-- 208 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVASPFPQ-HIILYGPPGVGKTTAARLALEEAKKLKHT--------PFA-- 208 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhcCCCC-eEEEECCCCCCHHHHHHHHHHhhhhccCC--------ccc--
Confidence 3456788899999999999999999998888766554 48999999999999999998876421100 000
Q ss_pred cchhhhccCCCccEEEEccCCCcC-H------------HH----HHHHHHHHhh------cCccCCceEEEeccCccCCH
Q psy13354 457 SVCVKIDNGCFMDYIEMDAASTRG-I------------NE----MAQLLEQTIY------APINARYKIYVIDEVHMLTH 513 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~~~~-~------------~~----i~~ii~~~~~------~p~~~~~rvviIDE~~~L~~ 513 (1342)
....|+.+++..... . +. .+..+..... ........+++|||++.|+.
T Consensus 209 ---------~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~ 279 (615)
T TIGR02903 209 ---------EDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDP 279 (615)
T ss_pred ---------CCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCH
Confidence 001233333221100 0 00 0111111000 00011234999999999999
Q ss_pred HHHHHHHHhhcCC----------------------------CCcEEEEEEeC-CCCCChHHHhccEEEEEEcCCCHHHHH
Q psy13354 514 HAFNAMLKTLEEP----------------------------PKYIKFILATT-EPQKIPITVLSRCIQFNLKKMLHHDIV 564 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p----------------------------~~~~vlIl~t~-~~~kl~~~L~sR~~~i~~~~l~~~el~ 564 (1342)
..++.|++++++. +..+++|.+++ .+..+.++|++||..+.|.+++.+++.
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~i~~~pls~edi~ 359 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAEVFFEPLTPEDIA 359 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeEEEeCCCCHHHHH
Confidence 9999999999752 12345555554 456788899999999999999999999
Q ss_pred HHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc--------C--C--CCCHHHHHHHhccCc
Q psy13354 565 NNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS--------S--E--KITLNSMQEMLSIID 625 (1342)
Q Consensus 565 ~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~--------~--~--~It~e~V~~~v~~~~ 625 (1342)
.++.+.+.+.++.+++++++.|++++. +.|++++.|+.+..+. . . .|+.++|+++++...
T Consensus 360 ~Il~~~a~~~~v~ls~eal~~L~~ys~-~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 360 LIVLNAAEKINVHLAAGVEELIARYTI-EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHCCC-cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHHHHhCCCc
Confidence 999999999898999999999999865 6699999887765442 1 1 378888888887643
No 351
>PRK05967 cystathionine beta-lyase; Provisional
Probab=99.53 E-value=8.3e-13 Score=156.82 Aligned_cols=250 Identities=18% Similarity=0.134 Sum_probs=166.9
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++....|++ .++.+.+.+.+++++ ||+.|+..++.++++|||+|+++...|+++.... ..+...|+.+..+
T Consensus 62 gnPt~~~Le~----~la~le~~~~~v~~s-SG~aAi~~~l~all~~GD~Vlv~~~~Y~~~~~l~~~~l~~~Gi~v~~v-- 134 (395)
T PRK05967 62 GTPTTDALCK----AIDALEGSAGTILVP-SGLAAVTVPFLGFLSPGDHALIVDSVYYPTRHFCDTMLKRLGVEVEYY-- 134 (395)
T ss_pred CChHHHHHHH----HHHHHhCCCCEEEEC-cHHHHHHHHHHHhcCCCCEEEEccCCcHHHHHHHHHHHHhcCeEEEEe--
Confidence 3454445555 888888877788877 8999999999999999999998887776654433 3456667754444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.+ +.+.++++++++ +++|++..+++| ...|+++|+++|+++|+++|+|++++...+ ..+++. +|+
T Consensus 135 d~~-----~~e~l~~al~~~-TklV~lesPsNP~l~v~dl~~I~~la~~~g~~vvVD~t~a~p~~-----~~pl~~GaDi 203 (395)
T PRK05967 135 DPE-----IGAGIAKLMRPN-TKVVHTEAPGSNTFEMQDIPAIAEAAHRHGAIVMMDNTWATPLY-----FRPLDFGVDI 203 (395)
T ss_pred CCC-----CHHHHHHhcCcC-ceEEEEECCCCCCCcHHHHHHHHHHHHHhCCEEEEECCccCcee-----cChhHcCCCE
Confidence 432 457788888764 566666655555 445999999999999999999999875433 335553 899
Q ss_pred EEecCCccCCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++.|.+|+++|-. +|+++.+++..+.+..... ..|...+|..+.+ . ..-+ +-+..+.++..+++..+.+.|
T Consensus 204 vv~S~tKy~~Gh~d~~~G~v~~~~~~~~~l~~~~~--~~G~~~~p~da~l--~-~rgl-~Tl~lR~~~~~~na~~lA~~L 277 (395)
T PRK05967 204 SIHAATKYPSGHSDILLGTVSANEKCWPQLLEAHG--TLGLCAGPDDTYQ--I-LRGL-RTMGIRLEHHRKSALEIARWL 277 (395)
T ss_pred EEEecccccCCCCCeeEEEEEcCHHHHHHHHHHHH--HcCCCCCHHHHHH--H-HcCc-ccHHHHHHHHHHHHHHHHHHH
Confidence 9999999995533 2888877766555543212 2344444444332 2 2222 256667889999999999999
Q ss_pred HhCC-c-EEeeCC---------------CCCeEEEEEccCC-CCCHHHHHHHHHHCCce
Q psy13354 300 DQRG-I-RIVSGG---------------TKSHIILVDLRNK-KITGKIAESILESANII 340 (1342)
Q Consensus 300 ~~~g-~-~~~~~~---------------~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~ 340 (1342)
++.. + .+..++ ..+.++.+.++.. ..+.+.+.++++.-.+.
T Consensus 278 ~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~ 336 (395)
T PRK05967 278 EGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIF 336 (395)
T ss_pred HhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcc
Confidence 9853 3 222221 1234666777532 11346667777765543
No 352
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=99.53 E-value=1.8e-12 Score=152.82 Aligned_cols=311 Identities=15% Similarity=0.124 Sum_probs=197.9
Q ss_pred eeecCCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHH
Q psy13354 32 LIASENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 32 l~a~~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~ 107 (1342)
+.||+.-.-|. ..+++.+.+.... ...+...++.+++.+.++++++.+ .++++++|||.++++++.
T Consensus 7 f~~gp~~~~~~~~~~~~~~~~~~~~----------HRs~~F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~ 76 (374)
T TIGR01365 7 FSSGPCAKRPGWSIEELKNAPLGRS----------HRSKLGKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALW 76 (374)
T ss_pred cCCCccCCCchhhHHHHhhhhcccC----------cCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHH
Confidence 56666666666 6666655443211 123445577777888999999974 356778899999999999
Q ss_pred Hcc-CCCCEEEEeeccCCccchhh-HHhhhCCce-eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCCcccCH
Q psy13354 108 SVL-NPGDTIMGMSLQEGGHLTHG-MMLNMSGKW-FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYSQYIDF 183 (1342)
Q Consensus 108 al~-~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~-~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~~~~~l 183 (1342)
.++ .+||.|++.. .++.+ .. ...+..|.. +..+..+ ....+|+++++. ...+.++++ +..+...|+
T Consensus 77 nl~~~~g~~vLv~g-~FG~r--~~~eia~~~g~~~v~~l~~~--~g~~~~~~~ve~-----~~~v~~vhnETSTGv~npv 146 (374)
T TIGR01365 77 SMLGCRGVDVLAWE-SFGKG--WVTDVTKQLKLPDVRVLEAE--YGKLPDLKKVDF-----KNDVVFTWNGTTSGVRVPN 146 (374)
T ss_pred HcCCCCCCeEEEEC-HHHHH--HHHHHHHhcCCCCcEEEcCC--CCCCCCHHHcCC-----CCCEEEecCCCchheeccc
Confidence 998 5899988643 22222 12 455667773 5566433 444578988873 133444433 444455577
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++++..+ +++++|+|.+.++|...- ..+.+|++++|.+|++++|+| |+++.++...+......
T Consensus 147 ~~i~~~~--~~~lliVDavSs~g~~~l-----~~d~iDv~~tgsQK~L~~ppGls~v~vs~~Al~~~~~~~~y~~~~~~~ 219 (374)
T TIGR01365 147 GDFIPAD--REGLTICDATSAAFAQDL-----DYHKLDVVTFSWQKVLGGEGAHGMLILSPRAVARLESYTPAWPLPKIF 219 (374)
T ss_pred ccccccc--CCCcEEEEccchhcCCCC-----ChhHCcEEEEechhccCCCCceEEEEECHHHHHHHhhcCCCCCChhhh
Confidence 6655322 589999999988876511 122379999999999988999 89999987665544210
Q ss_pred -------------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-cEEeeC--CCCCe-E
Q psy13354 254 -------------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-IRIVSG--GTKSH-I 315 (1342)
Q Consensus 254 -------------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~--~~~~~-~ 315 (1342)
...+..+|+.....++..++..+.++ +++.+.+++.++++.+++++++.| +.+... ...++ .
T Consensus 220 ~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~~~~~~~~rS~tv 299 (374)
T TIGR01365 220 RLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHFLAETPEIRSNTS 299 (374)
T ss_pred ccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCChhhcCCCe
Confidence 01122233333444444445544454 799999999999999999999999 666542 11233 3
Q ss_pred EEEEccCCCC-----C-----HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 316 ILVDLRNKKI-----T-----GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 316 v~i~~~~~~~-----~-----~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
+.+.++.... + ...+...++++||.+.++..+..+ ..+|++..... +.+|+..+
T Consensus 300 t~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~------~~fRIg~~G~i----~~~di~~l 363 (374)
T TIGR01365 300 VCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAP------SGLRIWCGATV----EKSDLECL 363 (374)
T ss_pred EEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCC------CceEEecCCcC----CHHHHHHH
Confidence 4455544321 1 344666666679999876554332 35999887764 44555443
No 353
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=99.52 E-value=8.1e-13 Score=160.05 Aligned_cols=293 Identities=16% Similarity=0.141 Sum_probs=173.7
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHccCCC-CEE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVLNPG-DTI 116 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~~pG-D~V 116 (1342)
.|.+.+++.+.+.. +.. .. ..|.. ... .++.++++++++.+ +.+++++||++|+..+++.+..+| +.|
T Consensus 61 ~p~v~~ai~~~~~~-~~~--~~-~~~~~-~~~----~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~g~~~i 131 (398)
T PRK03244 61 HPAVVEAVTRQLAT-LGH--VS-NLFAT-EPQ----IALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLTGRTKI 131 (398)
T ss_pred CHHHHHHHHHHHHh-ccC--cc-CccCC-HHH----HHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHHCCCeE
Confidence 35588888888753 321 11 12222 212 34555888888754 456666699999999999776666 355
Q ss_pred EEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC--
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID-- 182 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~-- 182 (1342)
+.....+.++..... ...|.. ..+..++. .|++.+++.+.+ +.++|++.+..++ ...+
T Consensus 132 i~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~-~~~aviiep~~~~~G~~~~~~ 203 (398)
T PRK03244 132 VAAEGGFHGRTMGAL--ALTGQPAKRAPFEPLPGGVEHVPY-----GDVDALAAAVDD-DTAAVFLEPIQGEAGVVPPPA 203 (398)
T ss_pred EEECCCcCCccHHHH--hccCCcccccCCCCCCCCceEeCC-----CCHHHHHHhhcC-CeEEEEEecccCCCCCcCCCH
Confidence 554444443322211 111110 11222232 278999988853 5666777665444 2222
Q ss_pred --HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCCC-eeEEEEechhHHHHhhccCCc
Q psy13354 183 --FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGPR-GGFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 183 --l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp~-GG~iv~~~~l~~~l~~~~~~~ 256 (1342)
+++|.++|++||+++|+||+|. |....+... .... ..|++ +++|+++++. -|++++++++++.+.......
T Consensus 204 ~~l~~l~~l~~~~~~llI~DEv~~-g~gr~g~~~~~~~~~~~pDi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~ 280 (398)
T PRK03244 204 GYLAAAREITDRHGALLVLDEVQT-GIGRTGAWFAHQHDGVTPDVV--TLAKGLGGGLPIGACLAFGPAADLLTPGLHGS 280 (398)
T ss_pred HHHHHHHHHHHHcCCEEEEecccc-CCcccchHHhhhhhCCCCCEE--EEchhhhCCcccEEEEEcHHHHhhccCCCCcC
Confidence 8999999999999999999986 221112111 1111 25765 5679994322 289999998888876533333
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
.++. ++...+++.+.++.+.+ .+..+++.+..+++.+.|++.+++... ....+.++|+.++.. ....+...+++
T Consensus 281 t~~~--~~~~~aaa~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~v~g~g~~~~i~~~~~-~~~~~~~~l~~ 355 (398)
T PRK03244 281 TFGG--NPVACAAALAVLDTIAS--EGLLENAERLGEQLRAGIEALGHPLVDHVRGRGLLLGIVLTAP-VAKAVEAAARE 355 (398)
T ss_pred CCCC--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhcCCCceeeEeeccEEEEEEEecc-HHHHHHHHHHH
Confidence 4433 34445555555554321 235677888889999999886543221 113567888887532 23455555555
Q ss_pred HCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+||.+.+.. ...+|++++..++
T Consensus 356 -~Gv~~~~~~----------~~~iR~~p~~~~t 377 (398)
T PRK03244 356 -AGFLVNAVA----------PDVIRLAPPLIIT 377 (398)
T ss_pred -CCeEEeecC----------CCEEEEECCCcCC
Confidence 599998631 2469999887655
No 354
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=99.52 E-value=1.6e-12 Score=157.62 Aligned_cols=296 Identities=16% Similarity=0.113 Sum_probs=173.2
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC--------
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN-------- 111 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~-------- 111 (1342)
.|.+.+++.+.+. .+.... ..+ ..+...++++ .+++++|.+.+++++ ||++|++.++..+..
T Consensus 59 ~~~i~~a~~~~~~-~~~~~~---~~~-~~~~~~~l~~----~l~~~~~~~~~~~~~-SGs~A~e~al~~a~~~~~~~~g~ 128 (401)
T PRK00854 59 HPKILAAMVEQAG-RLTLTS---RAF-RNDQLAPLYE----ELAALTGSHKVLPMN-SGAEAVETAIKAVRKWGYEVKGV 128 (401)
T ss_pred CHHHHHHHHHHHh-hccccc---ccc-CCHHHHHHHH----HHHhhCCCCEEEEeC-CcHHHHHHHHHHHHHHHHhccCC
Confidence 6779999888885 332221 111 2233444444 888888877666655 999999999998842
Q ss_pred -CC-CEEEEeeccCCccchhhHHhhhC-------C-ceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c-
Q psy13354 112 -PG-DTIMGMSLQEGGHLTHGMMLNMS-------G-KWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q- 179 (1342)
Q Consensus 112 -pG-D~Vlv~~~~~~~~~s~~~~~~~~-------g-~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~- 179 (1342)
+| ++|++....+.+.......+... + ....+..++.. |++++++.+.+ +.++|++.++.++ +
T Consensus 129 ~~~~~~vi~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~i~~-~~~aii~e~~~~~~G~ 202 (401)
T PRK00854 129 PEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFG-----DAEALEAAITP-NTVAFLVEPIQGEAGV 202 (401)
T ss_pred CCCCceEEEECCCcCCccHHHHhccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCC-CeEEEEEccccCCCCC
Confidence 23 67777654443332111111100 0 00112222332 88999998875 4566666554444 2
Q ss_pred cc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCCC--eeEEEEechhHHHHh
Q psy13354 180 YI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGPR--GGFILMKKKYKKIIN 250 (1342)
Q Consensus 180 ~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp~--GG~iv~~~~l~~~l~ 250 (1342)
.. .+++|+++|++||+++|+||+|. |....+... .... .+|+++. +|++++.. .|++++++++++.+.
T Consensus 203 ~~~~~~~l~~l~~l~~~~gi~lI~DEv~~-g~g~~g~~~~~~~~g~~~D~~~~--~K~l~gg~~~ig~v~~~~~~~~~l~ 279 (401)
T PRK00854 203 IIPPAGYFTRVRELCTANNVTLILDEIQT-GLGRTGKLLAEEHEGIEADVTLI--GKALSGGFYPVSAVLSNSEVLGVLK 279 (401)
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCchHhHHhhcCCCCCEEEe--cccccCCccCeEEEEEcHHHHhccc
Confidence 22 39999999999999999999996 322222111 0111 2587776 49995542 489999999888776
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccC-CCCCHH
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRN-KKITGK 328 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~-~~~~~~ 328 (1342)
.......+++ ++..++++.+.++.+.+ ....++++++.+++.+.|++.+..... ....+.++.+.+.. .....+
T Consensus 280 ~~~~~~t~~~--~~~~~aa~~a~L~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~g~g~~~~i~~~~~~~~~~~ 355 (401)
T PRK00854 280 PGQHGSTFGG--NPLACAVARAALKVLTE--EGMIENAAEMGAYFLEGLRSIRSNIVREVRGRGLMLAVELEPEAGGARQ 355 (401)
T ss_pred CCCCCCCCCc--CHHHHHHHHHHHHHHHH--cCHHHHHHHHHHHHHHHHHhhccCceEEEeccceEEEEEEecCchhHHH
Confidence 5333333333 33444444444444331 235678888899999999886543221 11234445454432 222345
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+...+++ +||.+.+. . .+++|++++..++.
T Consensus 356 ~~~~L~~-~GV~v~~~-------~---~~~lR~~p~~~~t~ 385 (401)
T PRK00854 356 YCEALKE-RGLLAKDT-------H---DHTIRLAPPLVITR 385 (401)
T ss_pred HHHHHHH-CCeEEecC-------C---CCEEEEeCCcccCH
Confidence 6666665 59998632 1 24799998766553
No 355
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=99.52 E-value=1.3e-12 Score=155.24 Aligned_cols=309 Identities=10% Similarity=0.033 Sum_probs=186.1
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceE-ecCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANV-QPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi-~~~sGs~A~~~al 106 (1342)
-.+.+|+..+++.+.+++..........+ ...+...++.+.+++.++++++.+ +.++ +++|||.+++.++
T Consensus 5 ~~f~pGP~~~~~~v~~a~~~~~~~~~~~~-------hr~~~f~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~ 77 (361)
T TIGR01366 5 GRFGSGPSKVRLEQLQALTTTAASLFGTS-------HRQAPVKNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAAT 77 (361)
T ss_pred CcccCCCcCCCHHHHHHHHhcCccccccC-------cCChHHHHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHH
Confidence 34778999999999999764311011001 112333466667899999999984 3444 4667999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEE-EEcCCCCC-cccCHH
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI-IAGASAYS-QYIDFE 184 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~li-v~~~s~~~-~~~~l~ 184 (1342)
.+++.+ +.+++....++..+.........+..+..+..+ +...++. .+.+ ++++| +++.++.+ ...|++
T Consensus 78 ~~l~~~-~~l~i~~G~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~-----~~~~-~~~lV~~~h~et~tG~~~pi~ 148 (361)
T TIGR01366 78 FGLIEK-KSLHLSFGEFSSKFAKAVKLAPWLGEPIIVTAD--PGSAPEP-----QADP-GVDVIAWAHNETSTGVAVPVR 148 (361)
T ss_pred Hhcccc-cccEEecCHHHHHHHHHHHhhhccCCceEEecC--CCCCCCC-----ccCC-CCCEEEEcccCCccceecccc
Confidence 999743 333333333333332221111112234555443 2233333 2233 34444 44444444 444888
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC---------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF--------- 254 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~--------- 254 (1342)
+| ++++|+++++|+++++|...- .++.+|++++|.+|+++++.| ++++.+++..+.+.....
T Consensus 149 ~I---~~~~g~~~iVDavqs~g~~~i-----dv~~~D~~~~s~~K~lg~~~Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~ 220 (361)
T TIGR01366 149 RP---EGSDDALVVIDATSGAGGLPV-----DIAETDVYYFAPQKNFASDGGLWLAIMSPAALERIEAIAASGRWVPEFL 220 (361)
T ss_pred cc---cccCCCeEEEEcCccccCCCC-----CHHHCCEEEEEchhhcCCCCceEEEEECHHHHhhhhcccCCCCCCchhh
Confidence 77 588999999999999887611 112379999999999955555 666678877666542111
Q ss_pred -----------CccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCC--CCeE-EEE
Q psy13354 255 -----------PGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-IRIVSGGT--KSHI-ILV 318 (1342)
Q Consensus 255 -----------~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~--~~~~-v~i 318 (1342)
....+++......++..++..+... +++...++..+.++++++.+.+.+ ++++.... .... ..+
T Consensus 221 d~~~~~~~~~~~~t~~tp~i~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~~~~~~~~~~s~~v~~v 300 (361)
T TIGR01366 221 SLPTAVDNSLKNQTYNTPAIATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYATPFVTDPGKRSQVVGTI 300 (361)
T ss_pred hHHHHHhccccCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcccceEEE
Confidence 1223455555555777777766655 478888999999999999999987 45443111 1222 334
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++ .+.+.+.+...|+++||.+.+.... +....+|+|...++|.
T Consensus 301 ~~~-~g~~~~~v~~~L~~~gI~i~~~~~~------l~~~~vRis~~~~~t~ 344 (361)
T TIGR01366 301 DFV-DDIDAATVAKILRANGIVDTEPYRK------LGRNQLRVAMFPAIDP 344 (361)
T ss_pred ECC-CccCHHHHHHHHHHCCCeeccCccc------cCCCcEEEEcCCCCCH
Confidence 444 3345555555556679998643211 1234699999998774
No 356
>PRK15029 arginine decarboxylase; Provisional
Probab=99.52 E-value=2.7e-12 Score=161.36 Aligned_cols=223 Identities=14% Similarity=0.142 Sum_probs=154.2
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CC--
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KK-- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~-- 150 (1342)
..++.+..++.||++++.+.++|+|.+|.+++++++++||.|+ +...+|.|....+...|. .++++... +.
T Consensus 207 I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~~~~gd~Vl---v~RN~HKSv~~al~L~ga--~Pvyl~P~~~~~Gi 281 (755)
T PRK15029 207 FGESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVV---VDRNCHKSIEQGLILTGA--KPVYMVPSRNRYGI 281 (755)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHhcCCCCEEE---eecccHHHHHHHHHHcCC--eEEEecccccccCC
Confidence 3446669999999999999996777799999999999999999 555889998888888888 44444322 21
Q ss_pred -CCCC-----HHHHHHHHHhcC---------CeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC
Q psy13354 151 -EKID-----YKKVEYLAKKNK---------PKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP 214 (1342)
Q Consensus 151 -~~id-----~e~Le~~i~~~~---------~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~ 214 (1342)
+.++ ++.+++++.++. |..+++++|+|- ...++++|+++|+++|++|++||||++-+.....++
T Consensus 282 ~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY~Gv~~di~~I~~~~h~~~~~llvDEAhGah~~F~~~~p 361 (755)
T PRK15029 282 IGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYA 361 (755)
T ss_pred ccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCCcceeeCHHHHHHHHHhcCCeEEEECccccccccCcccc
Confidence 2344 899999886532 224555555555 555999999999999999999999975432222222
Q ss_pred --CCC-------CCCc-EEEecCCccCCCCCe-eEEEEech--h--HHHHhhccCCccccCCcHHHHHHHHHHHHHhccc
Q psy13354 215 --NPV-------PFAD-FITSTTHKSLRGPRG-GFILMKKK--Y--KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279 (1342)
Q Consensus 215 --~~l-------~~~D-ivv~S~sK~l~gp~G-G~iv~~~~--l--~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~ 279 (1342)
+++ ..+| +++.|.||++++.+. +++-.+.. . .+.++.....+.+++|..+.++++-.+...+...
T Consensus 362 ~~sa~~~~~~~~~Gad~~vvqStHKtL~alTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSPSY~LmASLD~ar~~m~~~ 441 (755)
T PRK15029 362 DHYAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGN 441 (755)
T ss_pred ccccccccccccCCCceEEEEchhhcccchhhhhhheeCCCccccCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhhh
Confidence 223 2477 999999999988777 56655433 1 2345543334444556666666665554444322
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 280 DFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 280 ~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
..+...++..+.+..+++.+.+.
T Consensus 442 ~G~~l~~~~i~~~~~~r~~l~~~ 464 (755)
T PRK15029 442 SGLSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_pred hhHHHHHHHHHHHHHHHHHHHhc
Confidence 45556777778888888888654
No 357
>KOG0634|consensus
Probab=99.51 E-value=1.2e-12 Score=147.75 Aligned_cols=292 Identities=13% Similarity=0.075 Sum_probs=191.2
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhC----C----CCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhh
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFN----A----EAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNM 135 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g----~----~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~ 135 (1342)
.|+.+.+..+|.. .+.++.+ . +..++.+++.++|++.+++.++++||+|++-..++++. ...++.
T Consensus 95 QYg~s~G~peLl~----fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~~N~gd~vlie~~ty~~A---L~s~~a 167 (472)
T KOG0634|consen 95 QYGQSSGIPELLL----FIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTLINRGDHVLIEEYTYPSA---LQSMEA 167 (472)
T ss_pred ccccccCcHHHHH----HHHHhccccccCCCCCCceEEEecCCchHHHHHHHHhhcCCCceEEecccchHH---HHhccc
Confidence 3567777888888 5555655 1 24566665888899999999999999999766554433 333345
Q ss_pred CCceeEEEEecCCCCCCCCHHHHHHHHHhc--------CCeEEEEcC-CCCC-----cccCHHHHHHHHHHcCCEEEEEc
Q psy13354 136 SGKWFNSICYGLNKKEKIDYKKVEYLAKKN--------KPKLIIAGA-SAYS-----QYIDFERFYHIAKNINSYFMVDM 201 (1342)
Q Consensus 136 ~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--------~~~liv~~~-s~~~-----~~~~l~~I~~la~~~gi~LIvDe 201 (1342)
.|+ .+++++.|++| +++|.+++.+..- +|.+++.-+ +.|| ...--++|.++|++|+++||+||
T Consensus 168 ~gv--~~ipv~md~~G-i~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tls~errk~iy~LArKyDfLIVeDd 244 (472)
T KOG0634|consen 168 LGV--KIIPVKMDQDG-IDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTLSLERRKKIYQLARKYDFLIVEDD 244 (472)
T ss_pred cCc--eEEeccccCCC-CCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCccCHHHHHHHHHHHHHcCEEEEecC
Confidence 554 88888887766 8999999977632 367877755 2333 33357899999999999999999
Q ss_pred ccchhhhhc---C-----C-----------CCCCCCC----CcEEEecCCccCCCCCe--eEEEEechhHHHHhhccCCc
Q psy13354 202 AHYAGLIAA---G-----E-----------YPNPVPF----ADFITSTTHKSLRGPRG--GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 202 a~~~g~~~~---~-----~-----------~~~~l~~----~Divv~S~sK~l~gp~G--G~iv~~~~l~~~l~~~~~~~ 256 (1342)
.|.+..+.. . . .++.+.. ..+-..||||-+ +|.- ||+.+++-+++.+-......
T Consensus 245 pYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKii-aPGlRlG~it~~~~~l~ril~~ae~~ 323 (472)
T KOG0634|consen 245 PYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKII-APGLRLGWITGNSLFLKRILDLAEVA 323 (472)
T ss_pred ccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhh-cCcceeEEeecCHHHHHHHhhhccee
Confidence 988655542 0 0 1111110 124467999999 5433 99999997776665433222
Q ss_pred cccCCcHHHHHHHHHHHHHhcc----chHHHHHHHHHHHHHHHHHHHHhC---C-cEEeeCCCCCeEEEEEcc-------
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLK----PDFKIYQKQVVKNAKILSKILDQR---G-IRIVSGGTKSHIILVDLR------- 321 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~----~~~~~~~~~l~~~a~~l~~~L~~~---g-~~~~~~~~~~~~v~i~~~------- 321 (1342)
+.+ |....+.-+.+-+..... +|+.+++..+..++..+..+|.+. + +++ .+|.++.++||.++
T Consensus 324 t~~-pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~-~~P~aGmFiwv~i~~~~~~~~ 401 (472)
T KOG0634|consen 324 TSG-PSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEY-HPPKAGMFIWVEIPYINFDTK 401 (472)
T ss_pred ecC-cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEE-ecCCcceEEEEEecccccccc
Confidence 222 222222222222222222 367788888889999999988872 3 333 35788999999996
Q ss_pred CCCC-CHHHHHHHHHHCCceeeeccCCCCCCCccc-ccccccccccccc
Q psy13354 322 NKKI-TGKIAESILESANIICNKNSIPNDPEKPYF-TSGIRLGSSAITT 368 (1342)
Q Consensus 322 ~~~~-~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~-~~~lRi~~~~~~t 368 (1342)
.... -.+.....+.++||.+.++.++.+...... ..++|++++....
T Consensus 402 ~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a~~ 450 (472)
T KOG0634|consen 402 KSINQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFAEP 450 (472)
T ss_pred cchHHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecCCH
Confidence 2221 246677777788999998877665432221 2379999887644
No 358
>KOG0633|consensus
Probab=99.51 E-value=1e-12 Score=137.93 Aligned_cols=254 Identities=15% Similarity=0.156 Sum_probs=177.0
Q ss_pred CHHHHHHHHHHHccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-CCeEEEEcC
Q psy13354 97 SGSQANQAVFFSVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-KPKLIIAGA 174 (1342)
Q Consensus 97 sGs~A~~~al~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-~~~liv~~~ 174 (1342)
++-+.+..+++..+.|| ++|+..+++++.+..-+ ...++ .++.++.+.+|.++.|.+.+.+... .+++++++.
T Consensus 94 GsDE~ID~iiR~~c~PGkeKIl~cPPtysMY~v~A---~iNd~--eVvkvpl~pdF~lnvdai~evl~~ds~iK~~F~tS 168 (375)
T KOG0633|consen 94 GSDELIDLIIRCVCDPGKEKILDCPPTYSMYVVDA---AINDA--EVVKVPLNPDFSLNVDAIAEVLELDSKIKCIFLTS 168 (375)
T ss_pred CcHHHHHHHHhheecCCccceeecCCcceeEEEEe---ecCCc--eEEEecCCCCccccHHHHHHHHhccccceEEEEcC
Confidence 44458889999999999 78888777776653222 34555 6677788889999999999988765 678888888
Q ss_pred CCCC--cccCHHHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCCCC-cEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 175 SAYS--QYIDFERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVPFA-DFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 175 s~~~--~~~~l~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~~~-Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
|++| .....+.|.++.+-- +.++++||||..+.-........-... -++..++||.| |..| |+.+.+.++++
T Consensus 169 PgNPtg~~ik~~di~KiLe~p~nglVVvDEAYidFsg~~S~~~lV~kYpNLivlqTlSKsf-GLAGiRvG~~~~~~~ia~ 247 (375)
T KOG0633|consen 169 PGNPTGSIIKEDDILKILEMPDNGLVVVDEAYIDFSGVESRMKLVKKYPNLIVLQTLSKSF-GLAGIRVGYGAFPLSIAE 247 (375)
T ss_pred CCCCCcccccHHHHHHHHhCCCCcEEEEeeeeEeeccccccchHhHhCCceeehhhhhhhc-CcceeEeecccccHHHHH
Confidence 7777 233555666655543 689999999864322111111111122 35678999999 8888 99999999999
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEccC--CC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDLRN--KK 324 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~--~~ 324 (1342)
.++....+++.+.+ ...++..|+.+.....++.+++.+.+.+.++...|.+.. +.-+.++.+.+|+.+.+.+ .+
T Consensus 248 iln~~KaPYNiS~~---~s~~AL~Als~~n~kkme~~rdaiv~er~RL~keLt~v~~~~~~~gg~daNFiLi~v~~~~n~ 324 (375)
T KOG0633|consen 248 ILNRAKAPYNISVA---GSVAALAALSDSNGKKMEDVRDAIVRERERLFKELTEVPFLNDYPGGSDANFILIEVTGGDNG 324 (375)
T ss_pred HHHhccCCccccch---hHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHhhcCccccCCCCcccccEEEEEEcCCCcH
Confidence 99998889987753 233333344433334788889999999999999998853 3333456778888888864 33
Q ss_pred CCHHHHHHHHHHCCceeeec-cCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKN-SIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~-~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.....+++.+.||+|+-. .-++ ..+++|++++.
T Consensus 325 ~akkly~q~at~~gVvVRfrgse~~------c~G~lRitvGt 360 (375)
T KOG0633|consen 325 MAKKLYKQDATKMGVVVRFRGSEEG------CKGYLRITVGT 360 (375)
T ss_pred HHHHHHHHHHHhcceEEEEcCCccc------cceeEEEEcCC
Confidence 45677788888899999843 1222 25678987654
No 359
>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....
Probab=99.51 E-value=4.4e-12 Score=150.55 Aligned_cols=251 Identities=19% Similarity=0.205 Sum_probs=168.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC--------CceEecCCHHHHHHHHHHHccC--------C-----CCEEEEeeccC
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE--------AANVQPHSGSQANQAVFFSVLN--------P-----GDTIMGMSLQE 123 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~--------~~vi~~~sGs~A~~~al~al~~--------p-----GD~Vlv~~~~~ 123 (1342)
+...+...++|.++.+++++++|.+ ..-++++|||+|+..++.+.-. . +..+++.+ .
T Consensus 71 ~~~~P~~~~~E~~vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s--~ 148 (373)
T PF00282_consen 71 WEASPAATEIEREVIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVS--E 148 (373)
T ss_dssp TTTSHHHHHHHHHHHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEE--T
T ss_pred cccccccccchHHHHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccc--c
Confidence 3456778899999999999999988 2345556999999988865521 1 23344322 2
Q ss_pred CccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCE
Q psy13354 124 GGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSY 196 (1342)
Q Consensus 124 ~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~ 196 (1342)
.+|++..+++...|.+ ++.++.++++++|+++|++++.+. .|.+|+.+.+.+. ...|+++|+++|+++++|
T Consensus 149 ~aH~S~~Kaa~~lGlg--~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~l~~i~~i~~~~~~w 226 (373)
T PF00282_consen 149 QAHYSIEKAARILGLG--VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDPLEEIADICEKYNIW 226 (373)
T ss_dssp TS-THHHHHHHHTTSE--EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-SHHHHHHHHHHCT-E
T ss_pred ccccHHHHhcceeeeE--EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccCHHHHhhhcccccee
Confidence 4678888889999997 455577788999999999987643 2434444443333 666999999999999999
Q ss_pred EEEEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEech-hHHHHhhccCCc---------------
Q psy13354 197 FMVDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMKKK-YKKIINSAVFPG--------------- 256 (1342)
Q Consensus 197 LIvDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~-l~~~l~~~~~~~--------------- 256 (1342)
++||+|++...+....+. .-++.+|.++.++|||+..|.+ |+++.++. ...........+
T Consensus 227 lHVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~ 306 (373)
T PF00282_consen 227 LHVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPYGCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYG 306 (373)
T ss_dssp EEEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SSS-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEE
T ss_pred eeecccccccccccccccccccccccccccccchhhhhcCCccceeEEeecccchHHHhccChhhhcccccccccccccc
Confidence 999999875433222211 1233579999999999988888 88887763 222211000111
Q ss_pred --cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCCCeEEEEEc
Q psy13354 257 --IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 257 --~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~~~~v~i~~ 320 (1342)
...++.......+...++....+++.+..++..++++++.+.|.+.+ +++.. ++...++.+++
T Consensus 307 ~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~~~~~el~~-~~~~~~vcFr~ 372 (373)
T PF00282_consen 307 DYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRKDPRFELVN-EPDLNIVCFRY 372 (373)
T ss_dssp EGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESS-TTSSSEEEEEE
T ss_pred cccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEc-CCCceEEEEEe
Confidence 11223334455667677777777899999999999999999999964 78765 44556666654
No 360
>PRK12566 glycine dehydrogenase; Provisional
Probab=99.50 E-value=3.4e-12 Score=161.11 Aligned_cols=285 Identities=15% Similarity=0.177 Sum_probs=176.8
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-------C-CCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN-------P-GDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~-------p-GD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
..++.++..++.+++++++|.+.+.+.+++|+.|..++++++-. + .++|+++...|+.+... +...|.
T Consensus 538 sQG~lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh~~~Ge~~r~~vLIp~saHgtNpas---a~~~Gi- 613 (954)
T PRK12566 538 AEGYRAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYHRSRGQSQRDICLIPSSAHGTNPAS---AQMAGM- 613 (954)
T ss_pred hcCHHHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHHHhcCCCCCCEEEecccccccCHHH---HHHCCC-
Confidence 45566666677789999999999999998999999888877632 2 35677777666555433 344555
Q ss_pred eEEEEecCCCCCCCCHHHHHHHHHhcCC--eEEEE-cCCCCCcc-cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC
Q psy13354 140 FNSICYGLNKKEKIDYKKVEYLAKKNKP--KLIIA-GASAYSQY-IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 140 ~~~v~~~~~~~~~id~e~Le~~i~~~~~--~liv~-~~s~~~~~-~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
+++.++.+++|.+|+++|++++.+.++ +.|++ ++++.... .++++|+++||++|+++++|++|..+... ...
T Consensus 614 -eVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~V~eI~~iah~~Galv~vDgA~~~a~~~---l~~ 689 (954)
T PRK12566 614 -RVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEGIREICEVVHQHGGQVYMDGANLNAQVG---LAR 689 (954)
T ss_pred -EEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecchHHHHHHHHHHcCCEEEEEeeChhhccC---CCC
Confidence 666667778899999999999974333 33333 34444433 36999999999999999999999754441 111
Q ss_pred CCC-CCcEEEecCCccCCCCCe------eEEEEechhHHHHhhcc-------CC--ccc--cCCcHHHHHHHHHHHHHhc
Q psy13354 216 PVP-FADFITSTTHKSLRGPRG------GFILMKKKYKKIINSAV-------FP--GIQ--GGPLMHVIAAKAVAFKEVL 277 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~~~~-------~~--~~~--~~~~~~~~~Aaa~al~~~l 277 (1342)
+.+ .+|++++++||||++|.| |.+...+.+...+.... .+ ... .+.++...+-.+......+
T Consensus 690 Pg~~GADi~~~s~HKtf~~P~G~GGP~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gsa~~l~~A~~Yi~~l 769 (954)
T PRK12566 690 PADIGADVSHMNLHKTFCIPHGGGGPGMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGSASILPISWMYIAMM 769 (954)
T ss_pred hhhcCCCEEEecCCcccCcCccCCCCccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccchHHHHHHHHHHHHHH
Confidence 222 379999999999987766 44444454444444211 00 001 1111111222233333333
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC-C--eEEEEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCC
Q psy13354 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK-S--HIILVDLRNK-----KITGKIAESILESANIICNKNSIPND 349 (1342)
Q Consensus 278 ~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~-~--~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~ 349 (1342)
...+.+.......+++|+.+.|.+ ++.+...+.+ . +-+.+++... ....++..+|+ ++||......+|.
T Consensus 770 G~eLk~aa~~ailnAnYla~rL~~-~~~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvakRL~-d~Gihapt~~fPv- 846 (954)
T PRK12566 770 GPQLADASEVAILSANYLANQLGG-AFPVLYRGRNERVAHECILDLRPLKAQTGISEEDVAKRLM-DYGFHAPTMSFPV- 846 (954)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhHh-hCCCCcCCCCCCeeeEEEEEccccccccCCCHHHHHHHHH-HCCcEEeEEeecc-
Confidence 222444444457789999999977 4444332211 1 3333444321 22346777777 6799987755553
Q ss_pred CCCccccccccccccccccc
Q psy13354 350 PEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 350 ~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.+|++.+..++.
T Consensus 847 ------~~~LmIepTE~esk 860 (954)
T PRK12566 847 ------PGTLMVEPTESESK 860 (954)
T ss_pred ------CCEEEEEeeeeCCH
Confidence 24699998887664
No 361
>PLN02509 cystathionine beta-lyase
Probab=99.50 E-value=7e-13 Score=160.49 Aligned_cols=207 Identities=17% Similarity=0.160 Sum_probs=140.9
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+++.++++++.|.+.+++++ +|++|+..++ .++++||+|+++...|+++.... ..+...|+ .+..++..
T Consensus 135 ~~aLE~~lA~leg~e~ai~~~-SG~aAi~~il-~ll~~GD~VI~~~~~y~~t~~ll~~~l~~~G~--~v~~vd~~----- 205 (464)
T PLN02509 135 RDALESLLAKLDKADRAFCFT-SGMAALSAVT-HLIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV--VVKRVNTT----- 205 (464)
T ss_pred HHHHHHHHHHHhCCCEEEEeC-cHHHHHHHHH-HHhCCCCEEEEcCCchhhHHHHHHHHHHHCCe--EEEEeCCC-----
Confidence 344445999999988887777 9998886555 57899999998877776554332 23345566 44444432
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|++++++++++. .++|+++.++++ ...|+++|+++|++||++||+|++|+.+.... ++. .+|++++|++|+
T Consensus 206 d~e~l~~ai~~~-TklV~lesPsNPtG~i~Dl~~I~~lAk~~g~~lIVD~A~a~~~~~~-----pl~~gaDivv~S~tK~ 279 (464)
T PLN02509 206 NLDEVAAAIGPQ-TKLVWLESPTNPRQQISDIRKIAEMAHAQGALVLVDNSIMSPVLSR-----PLELGADIVMHSATKF 279 (464)
T ss_pred CHHHHHHhCCcC-CeEEEEECCCCCCCCHHHHHHHHHHHHHcCCEEEEECCccccccCC-----hhhcCCcEEEecCccc
Confidence 789999888754 466666665555 44599999999999999999999987765421 222 479999999999
Q ss_pred CCCCC---eeEEEEech-hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 231 LRGPR---GGFILMKKK-YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 231 l~gp~---GG~iv~~~~-l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
++|+. ||+++++++ +.+.++..... .++...|..+++....++ .+..+.++..+++.++.+.|++.
T Consensus 280 l~G~gdv~gG~v~~~~~~l~~~~~~~~~~--~g~~l~p~~A~l~lr~L~----tL~~R~~r~~~nA~~la~~L~~~ 349 (464)
T PLN02509 280 IAGHSDVMAGVLAVKGEKLAKEVYFLQNS--EGSGLAPFDCWLCLRGIK----TMALRIEKQQENARKIAMYLSSH 349 (464)
T ss_pred ccCCCccceeEEEeccHHHHHHHHHHHHh--cCCCcCHHHHHHHHhhhh----hHHHHHHHHHHHHHHHHHHHhcC
Confidence 97654 588887553 33433321111 123334444443333222 45567889999999999999875
No 362
>PRK05939 hypothetical protein; Provisional
Probab=99.50 E-value=4.8e-13 Score=160.40 Aligned_cols=214 Identities=16% Similarity=0.141 Sum_probs=145.6
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
+++....+|+ .++++.|.+++++++ +|+.|+..++.++++|||+|+++...++++......+...|+. +..++
T Consensus 45 g~p~~~~lE~----~la~leg~~~~v~~s-sG~~Ai~~~l~all~~Gd~Vv~~~~~y~~t~~~~~~l~~~G~~--v~~v~ 117 (397)
T PRK05939 45 GTPTTAALEA----KITKMEGGVGTVCFA-TGMAAIAAVFLTLLRAGDHLVSSQFLFGNTNSLFGTLRGLGVE--VTMVD 117 (397)
T ss_pred CCHHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHHcCCCCEEEECCCccccHHHHHHHHHhcCCE--EEEEC
Confidence 4566667777 899999999988888 9999999999999999999999887787766555555666774 44445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.. |+++++++++++ +++|+++.+++| ...|+++|+++|+++|+++|+|++|+.+.. ..+.. .+|++
T Consensus 118 ~~-----d~e~l~~~l~~~-tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~t~a~~~~-----~~~~~~gaDiv 186 (397)
T PRK05939 118 AT-----DVQNVAAAIRPN-TRMVFVETIANPGTQVADLAGIGALCRERGLLYVVDNTMTSPWL-----FRPKDVGASLV 186 (397)
T ss_pred CC-----CHHHHHHhCCCC-CeEEEEECCCCCCCCHHhHHHHHHHHHHcCCEEEEECCcccccc-----cCccccCCEEE
Confidence 43 899999998764 555555454444 345999999999999999999999876532 12332 47999
Q ss_pred EecCCccCCCCCe--eEEEEe-ch--------hHH-------------HHhhccCCccccCCcHHHHHHHHHHHHHhccc
Q psy13354 224 TSTTHKSLRGPRG--GFILMK-KK--------YKK-------------IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279 (1342)
Q Consensus 224 v~S~sK~l~gp~G--G~iv~~-~~--------l~~-------------~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~ 279 (1342)
+.|+||+++|..+ |+++.. .. +.. .++.. .....|+...|..+. +. ..-+ +
T Consensus 187 v~S~sK~~~g~g~~igg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~~~p~~a~--l~-~rgl-~ 261 (397)
T PRK05939 187 INSLSKYIAGHGNALGGAVTDTGLFDWSAYPNIFPAYRKGDPQQWGLTQIRKK-GLRDMGATLSSEAAH--RI-AIGA-E 261 (397)
T ss_pred EecCeecccCCCCeEEEEEecCcccccccccchhhhhhccchhhHHHHHHHHH-HHHhcCCCCCHHHHH--HH-HcCc-C
Confidence 9999999955332 444443 21 111 11110 001223333333332 12 2222 2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 280 DFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 280 ~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
-+..+.++..+|+..+.+.|++.+
T Consensus 262 tl~~R~~~~~~na~~la~~L~~~p 285 (397)
T PRK05939 262 TLALRVDRSCSNALALAQFLEAHP 285 (397)
T ss_pred cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 566678888999999999999864
No 363
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=99.50 E-value=9.2e-13 Score=157.48 Aligned_cols=210 Identities=21% Similarity=0.211 Sum_probs=144.7
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++...++++ .+++++|.+.+++++ +|+.|+..++. ++++||+|++++..+++....+. .....|+. ++.++
T Consensus 46 ~p~~~~le~----~la~l~g~~~~l~~~-sG~~al~~~l~-ll~~Gd~Vl~~~~~y~~~~~~~~~~~~~~G~~--v~~vd 117 (378)
T TIGR01329 46 NPTRTALES----LLAKLDKADRAFAFS-SGMAALDVITR-LLNNGDEIIAGDDLYGGTDRLLTQVVPRSGVV--VVHVD 117 (378)
T ss_pred ChHHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHH-HhCCCCEEEEcCCCchHHHHHHHHHHHHcCcE--EEEeC
Confidence 444455555 999999998887777 89999988776 78999999988777665543332 33456764 44445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++++++ ++++++++.++++ ...|+++|+++|+++|+++|+|++|+.+.. ..++. .+|++
T Consensus 118 ~~-----d~~~le~~i~~-~tklv~le~psnptg~v~dl~~I~~la~~~g~~vivD~a~~~~~~-----~~~l~~g~Di~ 186 (378)
T TIGR01329 118 TT-----DLDKVKAALGP-KTKLVLLESPTNPLQKIVDIRKISEMAHAQNALVVVDNTMMSPLL-----CNPLELGADIV 186 (378)
T ss_pred CC-----CHHHHHHhcCc-CceEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCccccc-----CChhhcCCcEE
Confidence 43 89999998875 4566666655555 455999999999999999999999865533 12233 47999
Q ss_pred EecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||++++++ ++.+.++..... .+....+..+++. ...+ ..+..+.++..+++..+.+.|
T Consensus 187 v~S~tK~l~G~~~~~~G~v~~~~~~~~~~~~~~~~~--~G~~~~~~~a~l~---~~~l-~tl~~R~e~~~~na~~la~~L 260 (378)
T TIGR01329 187 YHSATKFLAGHSDVMAGVLAVKGEEIAKKVYFLQNS--TGSGLAPFDCWLL---LRGI-KTLAIRIEKQQENARAIAMFL 260 (378)
T ss_pred EEecceeccCCccceeEEEEeCcHHHHHHHHHHHHh--cCCcCCHHHHHHH---HccC-CCHHHHHHHHHHHHHHHHHHH
Confidence 999999997754 58888855 554555543221 2222233333221 2222 356677888999999999999
Q ss_pred HhC
Q psy13354 300 DQR 302 (1342)
Q Consensus 300 ~~~ 302 (1342)
++.
T Consensus 261 ~~~ 263 (378)
T TIGR01329 261 STH 263 (378)
T ss_pred HhC
Confidence 874
No 364
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.50 E-value=7.6e-12 Score=162.40 Aligned_cols=320 Identities=16% Similarity=0.136 Sum_probs=193.6
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV 109 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al 109 (1342)
+.+.+....++|.+...+...- .+..-.|... .....+..+++.++.+++++++|.+.+.+.+++|++|..+.+.++
T Consensus 502 i~lGsct~~~~p~~~~~~~~~~--~f~~~hP~qp-~e~~qG~l~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~ 578 (954)
T PRK05367 502 IPLGSCTMKLNAAAEMIPITWP--EFANLHPFAP-AEQAAGYRELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAI 578 (954)
T ss_pred eeCCcCCCcCCHHHHHHHHhCc--cccccCCCCh-HHHHHHHHHHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHH
Confidence 5565655666666444433221 1111011000 011445678888899999999999988888867777776655444
Q ss_pred c----CCCC----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCCc
Q psy13354 110 L----NPGD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYSQ 179 (1342)
Q Consensus 110 ~----~pGD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~~ 179 (1342)
. .+|| +|+++...|++.. ..+...|. +++.++.+.+|.+|+++|++++.++ +...|++..+++.+
T Consensus 579 r~~~~~~G~~~r~~vlis~~aH~snp---~sa~~~G~--~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G 653 (954)
T PRK05367 579 RAYHESRGEGHRDVCLIPSSAHGTNP---ASAVMAGM--KVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHG 653 (954)
T ss_pred HHHhhccCCCCCCEEEEEchhhhhhH---HHHHHCCC--EEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCe
Confidence 2 5666 5887765554443 33455666 5566677778999999999999764 34445554444443
Q ss_pred c--cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCccCCCCCe------eEEEEechhHHHHh
Q psy13354 180 Y--IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHKSLRGPRG------GFILMKKKYKKIIN 250 (1342)
Q Consensus 180 ~--~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~ 250 (1342)
. .|+++|+++||++|+++++|+||..+...-. .+. -.+|++++++||||++|.| |++.+++.+...+.
T Consensus 654 ~~e~~I~eI~~i~h~~G~~v~VDgA~~~al~~l~---~pg~~GADi~~~s~HK~f~~P~G~GGPg~G~l~vr~~l~p~lp 730 (954)
T PRK05367 654 VFEETIREICEIVHEHGGQVYLDGANMNAQVGLA---RPGDIGADVSHLNLHKTFCIPHGGGGPGVGPIGVKAHLAPFLP 730 (954)
T ss_pred eecCCHHHHHHHHHHcCCEEEEECcChhhccCCC---ChhhcCCCEEEecCcccCCCCcCCCCCceEEEeecccccccCC
Confidence 3 5899999999999999999999975544211 121 2489999999999965554 68888876555543
Q ss_pred hcc-----CCccccCCc-HH-----HHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC---CCCeEE
Q psy13354 251 SAV-----FPGIQGGPL-MH-----VIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG---TKSHII 316 (1342)
Q Consensus 251 ~~~-----~~~~~~~~~-~~-----~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~---~~~~~v 316 (1342)
... .....+... .+ ....++..+..+..+++++..++...+++++.+.|.+. +++.... .-.+-+
T Consensus 731 g~~v~~~~~~~~~g~v~ta~~g~al~~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~-~~~~~~~~~~~~~~e~ 809 (954)
T PRK05367 731 GHPVQIAGGETGIGAVSAAPFGSASILPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDH-YPVLYTGANGRVAHEC 809 (954)
T ss_pred CCccCcCCCCCCcCcchhHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhh-cCccccCCCCCcccce
Confidence 221 000011111 11 11112223334455577777787889999999999773 4432211 112334
Q ss_pred EEEccC---C--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 317 LVDLRN---K--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~---~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+++.. . ....++++++ .++|+......+|. .+.+|++.+..++.
T Consensus 810 i~~~~~~~~~~g~~~~di~krL-~d~G~~~~t~~~pv-------~~~l~i~ptE~~s~ 859 (954)
T PRK05367 810 ILDLRPLKESTGITVDDIAKRL-IDYGFHAPTMSFPV-------AGTLMVEPTESESK 859 (954)
T ss_pred EEEeecccccCCCCHHHHHHHH-HHCCCeEeecCCcc-------CCEEEEEeeecCCH
Confidence 444432 1 1234566666 55699987755543 24589988886553
No 365
>CHL00181 cbbX CbbX; Provisional
Probab=99.50 E-value=5.7e-13 Score=152.07 Aligned_cols=190 Identities=16% Similarity=0.159 Sum_probs=135.4
Q ss_pred CccccccchhhHHHHHHHHH----------cC----CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 389 NFNTLIGQNHISKSLINALD----------KK----RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~----------~~----~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
.+.+++|++.+++.+.+.+. .| ..+..++|+||||||||++|+.+++.+...+...
T Consensus 21 l~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~---------- 90 (287)
T CHL00181 21 LDEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIK---------- 90 (287)
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCC----------
Confidence 34589999999887765531 11 2334589999999999999999999875321100
Q ss_pred CCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccC---------CHHHHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHML---------THHAFNAM 519 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~~~~~~~L 519 (1342)
...+++++.+... ......++++.+ ...|++|||++.+ +.+.++.|
T Consensus 91 ------------~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a-------~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L 151 (287)
T CHL00181 91 ------------KGHLLTVTRDDLVGQYIGHTAPKTKEVLKKA-------MGGVLFIDEAYYLYKPDNERDYGSEAIEIL 151 (287)
T ss_pred ------------CCceEEecHHHHHHHHhccchHHHHHHHHHc-------cCCEEEEEccchhccCCCccchHHHHHHHH
Confidence 0123444322100 011233344332 2359999999986 45678899
Q ss_pred HHhhcCCCCcEEEEEEeCCCC-----CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh----
Q psy13354 520 LKTLEEPPKYIKFILATTEPQ-----KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG---- 589 (1342)
Q Consensus 520 l~~Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~---- 589 (1342)
++.+++...++++|++++... ...+.+.+|+ ..+.|++++.+++.+++...+++.+..+++++...+.+.
T Consensus 152 ~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~ 231 (287)
T CHL00181 152 LQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKR 231 (287)
T ss_pred HHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHh
Confidence 999998878888888765321 2237899999 689999999999999999999999999999988777764
Q ss_pred ----cCCcHHHHHHHHHHHHhh
Q psy13354 590 ----AQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 590 ----~~g~lr~a~~~L~kl~~~ 607 (1342)
.-||.|.+.+.++++...
T Consensus 232 ~~~~~~GNaR~vrn~ve~~~~~ 253 (287)
T CHL00181 232 MEQPLFANARSVRNALDRARMR 253 (287)
T ss_pred CCCCCCccHHHHHHHHHHHHHH
Confidence 238899999999986654
No 366
>PRK07671 cystathionine beta-lyase; Provisional
Probab=99.49 E-value=6.9e-13 Score=158.35 Aligned_cols=210 Identities=18% Similarity=0.211 Sum_probs=144.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ +|+.|+..++ ++++|||+|+++...+++.+.. ...+...|+ +++.++
T Consensus 49 ~p~~~~Le~----~lA~l~g~~~~~~~~-sG~aai~~~~-~~l~~Gd~Viv~~~~y~~~~~~~~~~~~~~G~--~v~~v~ 120 (377)
T PRK07671 49 NPTRAALEE----LIAVLEGGHAGFAFG-SGMAAITAVM-MLFSSGDHVILTDDVYGGTYRVMTKVLNRFGI--EHTFVD 120 (377)
T ss_pred ChHHHHHHH----HHHHHhCCCceEEeC-CHHHHHHHHH-HHhCCCCEEEECCCccchHHHHHHHHHhcCCe--EEEEEC
Confidence 444455555 999999998887777 8998887765 5789999999888776644332 223445566 444444
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.. |++++++++++ ++++|+++.++|| ...++++|+++|+++|+++|+|++|+.+... .+.. .+|++
T Consensus 121 ~~-----d~~~l~~ai~~-~tklV~le~P~NPtg~~~dl~~I~~la~~~g~~lvvD~a~~~~~~~-----~p~~~g~Div 189 (377)
T PRK07671 121 TS-----NLEEVEEAIRP-NTKAIYVETPTNPLLKITDIKKISTIAKEKGLLTIVDNTFMTPYWQ-----SPISLGADIV 189 (377)
T ss_pred CC-----CHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCCccccC-----ChhhhCCeEE
Confidence 33 89999998876 4567776666666 4559999999999999999999998654331 1233 46999
Q ss_pred EecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||+++++ +++.+.++..... .++...+..+.+. +.. + ..+..+.++..+|+..+.+.|
T Consensus 190 v~S~sK~l~G~~~~~~G~~v~~~~~l~~~~~~~~~~--~g~~~~~~~a~l~--~~~-l-~tl~~R~~~~~~na~~la~~L 263 (377)
T PRK07671 190 LHSATKYLGGHSDVVAGLVVVNSPELAEDLHFVQNS--TGGILGPQDSWLL--LRG-L-KTLGIRMEEHETNSRAIAEFL 263 (377)
T ss_pred EecCcccccCCccceeEEEEeCcHHHHHHHHHHHHh--hcCCCCHHHHHHH--HcC-c-ChHHHHHHHHHHHHHHHHHHH
Confidence 999999997664 4877775 4666666543222 1233333333322 221 2 245567888899999999999
Q ss_pred HhC
Q psy13354 300 DQR 302 (1342)
Q Consensus 300 ~~~ 302 (1342)
++.
T Consensus 264 ~~~ 266 (377)
T PRK07671 264 NNH 266 (377)
T ss_pred HcC
Confidence 875
No 367
>PRK08064 cystathionine beta-lyase; Provisional
Probab=99.49 E-value=1.2e-12 Score=157.14 Aligned_cols=211 Identities=18% Similarity=0.173 Sum_probs=149.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....+++ .++++.|.+.+++++ +|+.|+..++. ++++||+|+++...|++.+..+ ..+...|+.+..+ +
T Consensus 53 ~p~~~~le~----~lA~l~g~~~~v~~~-sG~~ai~~~l~-~l~~Gd~Vlv~~~~y~~~~~~~~~~~~~~G~~v~~v--~ 124 (390)
T PRK08064 53 NPTREALED----IIAELEGGTKGFAFA-SGMAAISTAFL-LLSKGDHVLISEDVYGGTYRMITEVLSRFGIEHTFV--D 124 (390)
T ss_pred ChhHHHHHH----HHHHHhCCCCeEEEC-CHHHHHHHHHH-HhCCCCEEEEccCccchHHHHHHHHHHHcCCEEEEE--C
Confidence 454555555 999999998877776 99999988886 7889999999888777654433 3445667744444 5
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++.++++ +++|+++.+++| ...|+++|.++|+++|+++|+|++|+.+... .+.+ .+|++
T Consensus 125 ~~-----d~~~l~~~l~~~-tklV~l~~p~NptG~~~dl~~I~~la~~~g~~vvvD~a~~~~~~~-----~~~~~g~Div 193 (390)
T PRK08064 125 MT-----NLEEVAQNIKPN-TKLFYVETPSNPLLKVTDIRGVVKLAKAIGCLTFVDNTFLTPLLQ-----KPLDLGADVV 193 (390)
T ss_pred CC-----CHHHHHHhcCCC-ceEEEEECCCCCCcEeccHHHHHHHHHHcCCEEEEECCCCccccc-----CchhhCCcEE
Confidence 43 788999888764 566666666655 4559999999999999999999998754331 1222 37999
Q ss_pred EecCCccCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+.|+||+++|+.| |+++++ +++.+.++....++. ....+..+.. .. ..+. .+..+.++..+++..+.+.|
T Consensus 194 v~S~tK~~~G~~~~laG~~v~~~~~~~~~l~~~~~~~g--~~~~~~~a~l--~~-~gl~-tl~~R~~~~~~~a~~la~~L 267 (390)
T PRK08064 194 LHSATKFLAGHSDVLAGLAVVKDEELAQKLYFLQNSFG--AVLGVQDCWL--VL-RGLK-TLHVRLEHSSETANKIALYL 267 (390)
T ss_pred EeecceeccCCccceeEEEEeCCHHHHHHHHHHHHhcC--CCCCHHHHHH--HH-cccC-cHHHHHHHHHHHHHHHHHHH
Confidence 9999999977654 887775 477777766444332 2223333332 22 2222 45567888899999999999
Q ss_pred HhCC
Q psy13354 300 DQRG 303 (1342)
Q Consensus 300 ~~~g 303 (1342)
++.+
T Consensus 268 ~~~~ 271 (390)
T PRK08064 268 QEHP 271 (390)
T ss_pred hcCC
Confidence 8854
No 368
>PRK06620 hypothetical protein; Validated
Probab=99.48 E-value=7.7e-13 Score=144.67 Aligned_cols=185 Identities=13% Similarity=0.197 Sum_probs=131.3
Q ss_pred Ccccc-cc--chhhHHHHHHHHHc-CCCC--cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 389 NFNTL-IG--QNHISKSLINALDK-KRLH--HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 389 ~f~~l-vG--q~~~~~~L~~~l~~-~~~~--~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+|+++ +| .+.++..+.++.+. +.-+ +.++||||+|+|||++++++++..+.
T Consensus 14 tfd~Fvvg~~N~~a~~~~~~~~~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~----------------------- 70 (214)
T PRK06620 14 HPDEFIVSSSNDQAYNIIKNWQCGFGVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNA----------------------- 70 (214)
T ss_pred CchhhEecccHHHHHHHHHHHHHccccCCCcceEEEECCCCCCHHHHHHHHHhccCC-----------------------
Confidence 67774 34 45567777776653 2112 56899999999999999998876531
Q ss_pred ccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC--
Q psy13354 463 DNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ-- 540 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~-- 540 (1342)
.+.. .. . ...+ +.....+++|||+|.+.....-.+++.+.+.. . .+|++++.+.
T Consensus 71 ------~~~~--~~-~----~~~~---------~~~~~d~lliDdi~~~~~~~lf~l~N~~~e~g-~-~ilits~~~p~~ 126 (214)
T PRK06620 71 ------YIIK--DI-F----FNEE---------ILEKYNAFIIEDIENWQEPALLHIFNIINEKQ-K-YLLLTSSDKSRN 126 (214)
T ss_pred ------EEcc--hh-h----hchh---------HHhcCCEEEEeccccchHHHHHHHHHHHHhcC-C-EEEEEcCCCccc
Confidence 0110 00 0 0001 11234699999999876544444444444432 3 3455554433
Q ss_pred -CChHHHhccEE---EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc---CCCCC
Q psy13354 541 -KIPITVLSRCI---QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS---SEKIT 613 (1342)
Q Consensus 541 -kl~~~L~sR~~---~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~---~~~It 613 (1342)
.+ +.|+||+. ++++.+|+.+++..++++.++..|+.++++++++|++++.+|+|.+++.|+++..++ +..||
T Consensus 127 l~l-~~L~SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~~~~~~~it 205 (214)
T PRK06620 127 FTL-PDLSSRIKSVLSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPREYSKIIEILENINYFALISKRKIT 205 (214)
T ss_pred cch-HHHHHHHhCCceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHcCCCCC
Confidence 34 89999985 999999999999999999999999999999999999999999999999999976543 34599
Q ss_pred HHHHHHHh
Q psy13354 614 LNSMQEML 621 (1342)
Q Consensus 614 ~e~V~~~v 621 (1342)
.+.+++++
T Consensus 206 ~~~~~~~l 213 (214)
T PRK06620 206 ISLVKEVL 213 (214)
T ss_pred HHHHHHHh
Confidence 99988875
No 369
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=99.48 E-value=5.4e-12 Score=160.55 Aligned_cols=270 Identities=16% Similarity=0.142 Sum_probs=178.7
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--------CCCCEEEEeeccCCccchhhHHhhhCCce
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL--------NPGDTIMGMSLQEGGHLTHGMMLNMSGKW 139 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~--------~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~ 139 (1342)
..+..++..++.+++++++|.+.+.+.+++|+.|..++++++- ...++|+++...|++.... +...|.
T Consensus 525 sqG~lq~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~~~rge~~R~~vlip~saHgtnPas---a~~~G~- 600 (939)
T TIGR00461 525 VEGYQELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYHESRGENHRNICLIPVSAHGTNPAS---AAMAGM- 600 (939)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEccccCcCHHH---HHHCCC-
Confidence 4567788888999999999999888899888888876666552 1335788777666555433 345565
Q ss_pred eEEEEecCCCCCCCCHHHHHHHHHh--cCCeEEEE-cCCCCCcccC-HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC
Q psy13354 140 FNSICYGLNKKEKIDYKKVEYLAKK--NKPKLIIA-GASAYSQYID-FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 140 ~~~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~-~~s~~~~~~~-l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
+++.++.+++|.+|+++|++++.+ .++++|++ ++++++...+ +++|+++||++|.++++|+|+..+...- ..
T Consensus 601 -~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst~G~~e~~I~eI~~iah~~G~~v~VDgAq~~al~~l---~~ 676 (939)
T TIGR00461 601 -QVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPSTHGVFEPTIQHACDIVHSFGGQVYLDGANMNAQVGL---TS 676 (939)
T ss_pred -EEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCcCceecccHHHHHHHHHHcCCEEEEEecChhhCCCC---CC
Confidence 556667778899999999999985 24455544 4455544445 9999999999999999999986543311 11
Q ss_pred CCC-CCcEEEecCCccCCCC-----Ce-eEEEEechhHHHHhhccC---------Cc----ccc-CCcH-HHHHHHHHHH
Q psy13354 216 PVP-FADFITSTTHKSLRGP-----RG-GFILMKKKYKKIINSAVF---------PG----IQG-GPLM-HVIAAKAVAF 273 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~gp-----~G-G~iv~~~~l~~~l~~~~~---------~~----~~~-~~~~-~~~~Aaa~al 273 (1342)
+-+ .+|++++|.||+|++| +| |++.+++++...+-.... .. ..+ +..+ .....++..+
T Consensus 677 Pg~~GaDi~~~s~HKtf~~P~G~GGPg~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g~a~~~l~a~~yi 756 (939)
T TIGR00461 677 PGDLGADVCHLNLHKTFCIPHGGGGPGMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYGSASILPISWMYI 756 (939)
T ss_pred ccccCCCEEEecCCccCCCCCCCCCCCeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccCcHHHHHHHHHHH
Confidence 222 4899999999999744 44 999999876555431100 00 001 1111 1222333344
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC---CeEEEEEccCC-----CCCHHHHHHHHHHCCceeeecc
Q psy13354 274 KEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK---SHIILVDLRNK-----KITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 274 ~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~---~~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
..+..+++++..+....+++|+.+.|.+ ++++...... .+-+.++++.. ....+++.+|++. |+......
T Consensus 757 ~~lG~~GL~~~a~~ailnAnYl~~rL~~-~~~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIakrL~d~-G~hapt~~ 834 (939)
T TIGR00461 757 KMMGNEGLPKASVVAILNANYMATRLKD-HYPILFVGTLKHVAHECILDLRPLKAKTGIEAIDVAKRLQDY-GFHAPTLS 834 (939)
T ss_pred HHHCHHHHHHHHHHHHHHHHHHHHHhhc-cCcccccCCCCceeEEEEEeccchhhhcCCCHHHHHHHHHhC-CeeccccC
Confidence 4455667888888899999999999987 5665543221 23455666531 2345677777765 99876544
Q ss_pred CC
Q psy13354 346 IP 347 (1342)
Q Consensus 346 ~p 347 (1342)
+|
T Consensus 835 ~p 836 (939)
T TIGR00461 835 FP 836 (939)
T ss_pred Cc
Confidence 44
No 370
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=99.48 E-value=1.1e-11 Score=144.77 Aligned_cols=250 Identities=20% Similarity=0.235 Sum_probs=172.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~ 145 (1342)
+++....||+ .++.+-|.+.++.|+ ||+.|+..++.+++++||+|+++.-.|++.+..... +...|+ ++..+
T Consensus 61 ~nPT~~~lE~----~~a~LEg~~~~~afs-SGmaAI~~~~l~ll~~GD~vl~~~~~YG~t~~~~~~~l~~~gi--~~~~~ 133 (396)
T COG0626 61 GNPTRDALEE----ALAELEGGEDAFAFS-SGMAAISTALLALLKAGDHVLLPDDLYGGTYRLFEKILQKFGV--EVTFV 133 (396)
T ss_pred CCccHHHHHH----HHHHhhCCCcEEEec-CcHHHHHHHHHHhcCCCCEEEecCCccchHHHHHHHHHHhcCe--EEEEE
Confidence 4677777887 888888999999999 999999999999999999999977777776665544 455666 44444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.. +.+.+++++.+.++++|++-.|.|| ...|+++|+++|+++|+++|+|.+++.+.+ ..|++. +||
T Consensus 134 d~~-----~~~~~~~~~~~~~tk~v~lEtPsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfatP~~-----q~PL~~GaDI 203 (396)
T COG0626 134 DPG-----DDEALEAAIKEPNTKLVFLETPSNPLLEVPDIPAIARLAKAYGALVVVDNTFATPVL-----QRPLELGADI 203 (396)
T ss_pred CCC-----ChHHHHHHhcccCceEEEEeCCCCcccccccHHHHHHHHHhcCCEEEEECCcccccc-----cChhhcCCCE
Confidence 433 5667777776545677777665566 555999999999999999999998766554 456665 899
Q ss_pred EEecCCccCCCCC---eeEEEEechh-HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKY-KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l-~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++.|.+|.++|-. ||+++++++. .+.+... .....|+..+|..+-+ . .+-+. -+..+.++..+|+..+.+.
T Consensus 204 VvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~-~~~~~G~~l~p~dA~l--~-lRGlk-TL~~Rm~~~~~nA~~IA~~ 278 (396)
T COG0626 204 VVHSATKYLGGHSDVLGGVVLTPNEELYELLFFA-QRANTGAVLSPFDAWL--L-LRGLR-TLALRMERHNENALKIAEF 278 (396)
T ss_pred EEEeccccccCCcceeeeEEecChHHHHHHHHHH-HHhhcCCCCCHHHHHH--H-Hhccc-hHHHHHHHHHHHHHHHHHH
Confidence 9999999995432 2877766644 4443221 1112344444444432 2 22232 4556788999999999999
Q ss_pred HHhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCceee
Q psy13354 299 LDQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANIICN 342 (1342)
Q Consensus 299 L~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~ 342 (1342)
|.+.. +. ++.++ ..+.++.+.+.+. +.+.++++.-.+...
T Consensus 279 L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~----~~~~~f~~~L~l~~~ 335 (396)
T COG0626 279 LADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNE----EAAKKFLDSLKLFKL 335 (396)
T ss_pred HhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCCh----HHHHHHHHhCCccEE
Confidence 99853 33 32222 1345666776653 556777776555554
No 371
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=99.47 E-value=3.8e-12 Score=154.27 Aligned_cols=298 Identities=13% Similarity=0.064 Sum_probs=172.2
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc------
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------ 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------ 110 (1342)
.+-.|.+.+++.+.+.+ +. ... . ....+... ++.++++++.+.+.+.+++ ||++|+..++....
T Consensus 55 Gh~~p~v~~a~~~~~~~-~~-~~~--~-~~~~~~~~----~l~~~l~~~~~~~~~~~~~-sGseA~e~a~klar~~~~~~ 124 (403)
T PRK05093 55 GHCHPALVKALKEQGEK-LW-HIS--N-VFTNEPAL----RLAKKLIDATFAERVFFAN-SGAEANEAAFKLARRYACDR 124 (403)
T ss_pred CCCCHHHHHHHHHHHHh-cC-ccc--C-ccCCHHHH----HHHHHHHhhCCCCEEEEeC-chHHHHHHHHHHHHHHHhhc
Confidence 34566689998888753 21 111 1 11222233 4455788877666555555 99999999998651
Q ss_pred --CCCCEEEEeeccCCccchhhHHhh-----hCCc---eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 111 --NPGDTIMGMSLQEGGHLTHGMMLN-----MSGK---WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 111 --~pGD~Vlv~~~~~~~~~s~~~~~~-----~~g~---~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
...+.|+..+..+.+.......+. ..+. ....+.++.+ |++.+++.+.+ +.++|++.+.+.+
T Consensus 125 ~~~~~~~ii~~~~~~HG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~-~~aaiiiep~~~~gg 198 (403)
T PRK05093 125 HGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFN-----DLAAVKAVIDD-HTCAVVVEPIQGEGG 198 (403)
T ss_pred CCCCCCeEEEEcCCcCCchhhhHhhcCChhhhhcCCCCCCCcEEeCCC-----CHHHHHHHhcC-CeEEEEEecccCCCC
Confidence 123456655544333221110000 0000 0012223333 78999988864 4666776553332
Q ss_pred ----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHh
Q psy13354 179 ----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIIN 250 (1342)
Q Consensus 179 ----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~ 250 (1342)
....+++|+++|++||+++|+||+|. |....+.... ... .+|+ .|+||++++ ...|++++++++++.+.
T Consensus 199 ~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi--~s~sK~l~~G~rig~vv~~~~i~~~l~ 275 (403)
T PRK05093 199 VIPATPEFLQGLRELCDQHNALLIFDEVQT-GMGRTGDLFAYMHYGVTPDI--LTSAKALGGGFPIGAMLTTAEIASHFK 275 (403)
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCCCccchhhhhcCCCCCE--EEecccccCCcceEEEEEcHHHHhhcC
Confidence 22359999999999999999999987 4322332211 111 1464 477899942 11299999999988886
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcE--Ee-eCCCCCeEEEEEccCCC--C
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR--IV-SGGTKSHIILVDLRNKK--I 325 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~--~~-~~~~~~~~v~i~~~~~~--~ 325 (1342)
.......++ .+.+.++++..++ +.... .+..+++.++.+++.+.|.+.+.. +. ..+..+.++|+.++... .
T Consensus 276 ~~~~~~t~~-~~~~~~~aa~a~L-~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~G~~~~~~l~~~~~~~ 351 (403)
T PRK05093 276 VGTHGSTYG-GNPLACAVAEAVF-DIINT--PEVLEGVKARRQRFVDGLQKINQKYGVFSEIRGMGLLIGAELKPQYKGR 351 (403)
T ss_pred CCCCCCCCC-CCHHHHHHHHHHH-HHHhh--ccHHHHHHHHHHHHHHHHHHHHhhCCCeEeEeeCceEEEEEecCcchhH
Confidence 543433443 2333444444333 33321 245678888999999999875321 11 11234667888876432 3
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+++..++++ ||.+.+. + .+++|++++..++
T Consensus 352 ~~~~~~~l~~~-Gv~v~~~-------g---~~~lRl~~~~~~~ 383 (403)
T PRK05093 352 ARDFLNAAAEE-GVMVLVA-------G---PDVLRFAPSLVIE 383 (403)
T ss_pred HHHHHHHHHHC-CeEEecC-------C---CCEEEEeCCCCCC
Confidence 45677777765 9998742 1 2469998777655
No 372
>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated
Probab=99.47 E-value=1.7e-12 Score=155.02 Aligned_cols=210 Identities=18% Similarity=0.165 Sum_probs=142.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ ||+.|+.+++ ++++|||+|++++..+++.+... ..+...|+ .+..++
T Consensus 49 ~p~~~~Le~----~la~l~g~~~al~~~-SG~~Al~~~l-~~l~pGd~Vi~~~~~y~~t~~~~~~~~~~~gi--~v~~vd 120 (380)
T PRK06176 49 NPTRFALEE----LIADLEGGVKGFAFA-SGLAGIHAVF-SLFQSGDHVLLGDDVYGGTFRLFDKVLVKNGL--SCTIID 120 (380)
T ss_pred ChhHHHHHH----HHHHHhCCCCEEEEC-CHHHHHHHHH-HHcCCCCEEEEcCCChhHHHHHHHHHHHhcCe--EEEEcC
Confidence 444556666 999999998888877 9999998766 56799999999887776554433 23445565 444444
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.. |++++++++++ ++++|++..+++| ...|+++|+++|+++|++||+|++|+.+... .++. .+|++
T Consensus 121 ~~-----d~e~l~~ai~~-~t~lV~lesP~Nptg~~~di~~I~~la~~~gi~vivD~t~a~~~~~-----~p~~~gaDiv 189 (380)
T PRK06176 121 TS-----DLSQIKKAIKP-NTKALYLETPSNPLLKITDLAQCASVAKDHGLLTIVDNTFATPYYQ-----NPLLLGADIV 189 (380)
T ss_pred CC-----CHHHHHHhcCc-CceEEEEECCCCCCceecCHHHHHHHHHHcCCEEEEECCccccccC-----CccccCCCEE
Confidence 33 89999998876 4566666555555 4559999999999999999999998764331 1222 47999
Q ss_pred EecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|++|+++|+. ||++++++ ++.+.++..... .+....+..+.. . ...+ ..+..+.++..+++..+.+.|
T Consensus 190 v~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~--~G~~~~~~~~~l--~-~~gl-~tl~~R~~~~~~~a~~la~~L 263 (380)
T PRK06176 190 VHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNA--IGGVLGPQDSWL--L-QRGI-KTLGLRMEAHQKNALCVAEFL 263 (380)
T ss_pred EecCceeccCCccceeeEEEecHHHHHHHHHHHHHH--hcCCCCHHHHHH--H-Hhcc-CcHHHHHHHHHHHHHHHHHHH
Confidence 999999997654 58888754 565555432221 122222222211 1 1112 245566788888999999999
Q ss_pred HhC
Q psy13354 300 DQR 302 (1342)
Q Consensus 300 ~~~ 302 (1342)
++.
T Consensus 264 ~~~ 266 (380)
T PRK06176 264 EKH 266 (380)
T ss_pred HhC
Confidence 875
No 373
>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.46 E-value=1.2e-12 Score=158.16 Aligned_cols=216 Identities=16% Similarity=0.153 Sum_probs=142.3
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++...++|+ .++++.|.+++++++ ||++|+..++.+++++||+|++++..|++...... .+...|+ +++.+
T Consensus 62 ~~p~~~~le~----~lA~l~g~~~av~~s-SGt~Al~~al~~ll~~Gd~Vi~~~~~y~~t~~~~~~~l~~~Gi--~v~~v 134 (433)
T PRK08134 62 SNPTVAVLEE----RVAALEGGVGAIATA-SGQAALHLAIATLMGAGSHIVASSALYGGSHNLLHYTLRRFGI--ETTFV 134 (433)
T ss_pred cChHHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEeCCccHHHHHHHHHHHhhCCe--EEEEE
Confidence 3455556666 999999998876666 99999999999999999999998877765433322 2344565 55555
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
+.+ |++++++++++.+..+++.+++|+. ...|+++|+++|+++|+++|+|++|+.+.. ..++. .+|++
T Consensus 135 d~~-----d~~~l~~~i~~~TklV~~e~~~np~g~v~Di~~I~~la~~~gi~livD~t~a~~~~-----~~pl~~GaD~v 204 (433)
T PRK08134 135 KPG-----DIDGWRAAIRPNTRLLFGETLGNPGLEVLDIPTVAAIAHEAGVPLLVDSTFTTPYL-----LRPFEHGADLV 204 (433)
T ss_pred CCC-----CHHHHHHhcCCCCeEEEEECCCcccCcccCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhcCCCEE
Confidence 554 8999999998755444444444333 556999999999999999999999987654 22333 48999
Q ss_pred EecCCccCCCCC---eeEEEEechhH-------HHHhhc------------------------cCCccccCCcHHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYK-------KIINSA------------------------VFPGIQGGPLMHVIAAK 269 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~-------~~l~~~------------------------~~~~~~~~~~~~~~~Aa 269 (1342)
+.|.||+++|+. ||+++.+.... ..+... ......+...++..+++
T Consensus 205 v~S~tK~l~g~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~G~~ls~~~A~l 284 (433)
T PRK08134 205 YHSATKFLGGHGTAIGGVLVDGGRFDWEASGKFPELTEPYAGFHGMVFAEESTVAAFLLRARREGLRDFGACLSPMNAWQ 284 (433)
T ss_pred EeccccccCCCCCceEEEEEecCccccccccccccccCCcccccccchhhccchhHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 999999994433 26555322110 000000 00011222233333332
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 270 a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
. ...++ .+..+.++..+++..+.+.|++..
T Consensus 285 ~---~~gL~-tl~~R~~~~~~nA~~la~~L~~~p 314 (433)
T PRK08134 285 L---LQGIE-TLPLRMERHVANTRKVVAFLASHP 314 (433)
T ss_pred H---hcCCC-cHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2 22232 567788999999999999998853
No 374
>PLN02452 phosphoserine transaminase
Probab=99.46 E-value=7.5e-12 Score=147.71 Aligned_cols=312 Identities=15% Similarity=0.106 Sum_probs=203.9
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~ 104 (1342)
+.+.+.+|+..+|++|++++...+.+--..|.+--......+...++.+.+++.++++++.+ +++++.+|||.++.+
T Consensus 7 ~~~~f~pGP~~lp~~Vl~~~~~~~~~~~~~g~s~~~~sHRs~~f~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea 86 (365)
T PLN02452 7 RVFNFSAGPATLPANVLAKAQAELYNWEGSGMSVMEMSHRGKEFLSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAA 86 (365)
T ss_pred ceEeeeCCCCCCCHHHHHHHHHHHhcccccCccccccCCCchHHHHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHH
Confidence 34778999999999999999988753222232222222345566688888999999999975 467777899999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchh--hHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTH--GMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~--~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
+...++.+||++++.. .+.++. ...+...|........+.. ....+++++++. ....+.+.++.+..+ +.
T Consensus 87 ~~~nl~~~~~~~l~~~---~G~fg~r~~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~v~~~hnETstGv 160 (365)
T PLN02452 87 IPLNLCKPGDKADFVV---TGSWSKKAAKEAKKYCKTNVIASGKDEKYTKIPSVSEWEL---TPDAKFVHICANETIHGV 160 (365)
T ss_pred HHHhcCCCCCeEEEEE---CCHHHHHHHHHHHHhCCCcEEEecCCCCCCCCCChHHcCC---CCCCcEEEECCCCCCCcE
Confidence 9999999999988654 444442 3345555652222211111 112456666422 123455555444433 22
Q ss_pred --cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc--
Q psy13354 181 --IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV-- 253 (1342)
Q Consensus 181 --~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~-- 253 (1342)
.+++++. ++++|+|.++++|.. +++ ..++..+|.+|++ ||+| |+++.++++.+.+....
T Consensus 161 ~~~~~~~i~------~~~lvVDa~Ss~g~~-------pidv~~~~v~~~saqK~l-GP~Gl~~v~vr~~~l~~~~~~~~~ 226 (365)
T PLN02452 161 EFKDYPDVG------NVPLVADMSSNFLSK-------PVDVSKYGVIYAGAQKNV-GPSGVTIVIIRKDLIGNARPITPG 226 (365)
T ss_pred ecCcccccC------CCeEEEECCccccCc-------ccCHHHcCEEEEeccccc-CCCCeEEEEEcHHHHhhcccCCCc
Confidence 3565553 389999999988765 333 2356667999999 8999 99999998776654321
Q ss_pred ---------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcEEe-eCC--CCCeEEEEE
Q psy13354 254 ---------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIRIV-SGG--TKSHIILVD 319 (1342)
Q Consensus 254 ---------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~~~-~~~--~~~~~v~i~ 319 (1342)
....+++|+.+...++..++..+.++ +++.+.++.++.++++++.|++. |+... ..+ .....+.+.
T Consensus 227 ~~~~~~~~~~~s~~~TP~v~~i~~l~~aL~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~ 306 (365)
T PLN02452 227 MLDYKIHAENDSLYNTPPCFGIYMCGLVFEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFT 306 (365)
T ss_pred hhhHHHHHhcCCccCChhHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEE
Confidence 11223678888888888888877765 79999999999999999999984 66211 111 122456677
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+++..+ .+.+.+.++++|+...++ +.. -+++|+|+=...+
T Consensus 307 ~~~~~~-~~~f~~~~~~~g~~~~~G----~r~----~gg~R~s~yna~~ 346 (365)
T PLN02452 307 LGGSEL-EAEFVKEAAKAGMVQLKG----HRS----VGGMRASIYNAMP 346 (365)
T ss_pred cCCchh-HHHHHHHHHHCCCcccCC----ccc----cCceEEECcCCCC
Confidence 776543 344555555669988643 322 2349998766433
No 375
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=99.46 E-value=3.7e-12 Score=150.83 Aligned_cols=248 Identities=20% Similarity=0.286 Sum_probs=167.5
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~ 145 (1342)
+++....+|+ .++++.|.+.+++++ ||+.|+..++.+++++||+|+++...|++...... .+...|+. +..+
T Consensus 53 gnPt~~~le~----~la~Le~g~~a~~~~-SGmaAi~~~l~~ll~~Gd~iv~~~~~Y~~t~~~~~~~l~~~gv~--v~~~ 125 (386)
T PF01053_consen 53 GNPTVRALEQ----RLAALEGGEDALLFS-SGMAAISAALLALLKPGDHIVASDDLYGGTYRLLEELLPRFGVE--VTFV 125 (386)
T ss_dssp C-HHHHHHHH----HHHHHHT-SEEEEES-SHHHHHHHHHHHHS-TTBEEEEESSSSHHHHHHHHHCHHHTTSE--EEEE
T ss_pred ccccHHHHHH----HHHHhhcccceeecc-chHHHHHHHHHhhcccCCceEecCCccCcchhhhhhhhcccCcE--EEEe
Confidence 4666666666 889999999899988 99999999999999999999998877766555444 34556664 4444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcC-CEEEEEcccchhhhhcCCCCCCCCC-Cc
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNIN-SYFMVDMAHYAGLIAAGEYPNPVPF-AD 221 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~g-i~LIvDea~~~g~~~~~~~~~~l~~-~D 221 (1342)
+.. |++++++++++ +.++|++-.+.|| ...|+++|+++|+++| +++++|.+.+.... ..++.. +|
T Consensus 126 d~~-----d~~~l~~~l~~-~t~~v~~EspsNP~l~v~Dl~~i~~~a~~~g~~~~vVDnT~atp~~-----~~pL~~GaD 194 (386)
T PF01053_consen 126 DPT-----DLEALEAALRP-NTKLVFLESPSNPTLEVPDLEAIAKLAKEHGDILVVVDNTFATPYN-----QNPLELGAD 194 (386)
T ss_dssp STT-----SHHHHHHHHCT-TEEEEEEESSBTTTTB---HHHHHHHHHHTTT-EEEEECTTTHTTT-----C-GGGGT-S
T ss_pred Cch-----hHHHHHhhccc-cceEEEEEcCCCcccccccHHHHHHHHHHhCCceEEeeccccceee-----eccCcCCce
Confidence 544 89999999987 5566666555555 5559999999999998 99999998765433 345554 89
Q ss_pred EEEecCCccCCCCC---eeEEEEec--hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPR---GGFILMKK--KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296 (1342)
Q Consensus 222 ivv~S~sK~l~gp~---GG~iv~~~--~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~ 296 (1342)
+++.|.+|+++|-. ||++++++ ++.+.++... ...|...+|..+.+. . ..+. -+..+.++..+|+..+.
T Consensus 195 ivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~--~~~G~~~~p~da~ll--~-rgl~-Tl~~R~~~~~~nA~~lA 268 (386)
T PF01053_consen 195 IVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFR--RLLGATLSPFDAWLL--L-RGLR-TLPLRMERQNENAEALA 268 (386)
T ss_dssp EEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHH--HHHT-B--HHHHHHH--H-HHHT-THHHHHHHHHHHHHHHH
T ss_pred EEEeeccccccCCcceeeEEEEECchhhhhhhhcchh--hhcCccchHHHHHHH--h-cCCC-cHHHHHHHHHHHHHHHH
Confidence 99999999996543 38888776 6766665432 234444444444332 2 2232 56677899999999999
Q ss_pred HHHHhCC-cE-EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 297 KILDQRG-IR-IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 297 ~~L~~~g-~~-~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
+.|++.. +. +..+. ..+.++.+.+++.. +.+..+++.-.+..
T Consensus 269 ~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~---~~~~~f~~~l~l~~ 327 (386)
T PF01053_consen 269 EFLEEHPKVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE---EAARRFLDALKLFS 327 (386)
T ss_dssp HHHHTSTTEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH---HHHHHHHHH-SSSE
T ss_pred HHHHhCCCCCeEEEcccccccceeeeeecccccCceeEEEeccch---hhhHhHHhhhhhHh
Confidence 9999864 33 33221 22347778877532 56777777766653
No 376
>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.46 E-value=2.4e-12 Score=156.03 Aligned_cols=214 Identities=18% Similarity=0.173 Sum_probs=143.7
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ ||++|+..++.++++|||+|+++...|++..... ..+...|+ .++.++
T Consensus 62 ~p~~~~le~----~lA~l~g~~~al~~~-SG~~Ai~~al~all~pGd~VIv~~~~y~~t~~~~~~~~~~~G~--~v~~vd 134 (427)
T PRK05994 62 NPTNAVLEE----RVAALEGGTAALAVA-SGHAAQFLVFHTLLQPGDEFIAARKLYGGSINQFGHAFKSFGW--QVRWAD 134 (427)
T ss_pred CccHHHHHH----HHHHHhCCCcEEEEc-CHHHHHHHHHHHHhCCCCEEEEecCcchhHHHHHHHHHHhcCc--EEEEEC
Confidence 344555666 899999998877777 9999999999999999999999887776554332 22445566 444445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++++++. +++|++..+++| ...|+++|+++|+++|+++|+|++|+.+.. ..+++ .+|++
T Consensus 135 ~~-----d~~~l~~ai~~~-tklV~vesp~NptG~v~dl~~I~~la~~~gi~livD~a~a~~~~-----~~pl~~gaDiv 203 (427)
T PRK05994 135 AD-----DPASFERAITPR-TKAIFIESIANPGGTVTDIAAIAEVAHRAGLPLIVDNTLASPYL-----IRPIEHGADIV 203 (427)
T ss_pred CC-----CHHHHHHhcCcC-CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCcccccc-----CCccccCCcEE
Confidence 43 889999988764 556555555554 455999999999999999999999976543 22333 48999
Q ss_pred EecCCccCCCCCe---eEEEEech-----------------------hHHHHh-------h-ccCCccccCCcHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMKKK-----------------------YKKIIN-------S-AVFPGIQGGPLMHVIAAK 269 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~~~-----------------------l~~~l~-------~-~~~~~~~~~~~~~~~~Aa 269 (1342)
+.|++|+++|+.+ |+++.... +.+.+. . .......|..+++..+++
T Consensus 204 v~S~tK~lgg~~~~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~A~l 283 (427)
T PRK05994 204 VHSLTKFLGGHGNSMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFAIAARVLGLRDLGPAISPFNAFL 283 (427)
T ss_pred EEcCccccCCCCCcEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhHHHHHHHHHHhcCCCCCHHHHHH
Confidence 9999999965543 66653221 111100 0 000112233344444443
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 270 a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
... .+ ..+..+.++..+++..+.+.|++.+
T Consensus 284 ~~~---~l-~tL~~r~~~~~~~a~~la~~L~~~p 313 (427)
T PRK05994 284 ILT---GI-ETLPLRMQRHSDNALAVAEWLKGHP 313 (427)
T ss_pred HHc---Cc-ccHHHHHHHHHHHHHHHHHHHHhCC
Confidence 322 22 2566778899999999999998853
No 377
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.46 E-value=8.3e-13 Score=146.96 Aligned_cols=200 Identities=14% Similarity=0.195 Sum_probs=142.4
Q ss_pred CCCcccccc--chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 387 PSNFNTLIG--QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 387 p~~f~~lvG--q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
+.+|++.++ ++.+++.+.+.+... .++.++|+||+|+|||++|+.+++.+...+
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~lll~G~~G~GKT~la~~~~~~~~~~~----------------------- 66 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAAGK-GDRFLYLWGESGSGKSHLLQAACAAAEERG----------------------- 66 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHhcC-CCCeEEEECCCCCCHHHHHHHHHHHHHhcC-----------------------
Confidence 457888763 567888888886643 455689999999999999999999875211
Q ss_pred CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH--HHHHHHHhhcCCC-CcEEEEEEeCCCC-
Q psy13354 465 GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH--AFNAMLKTLEEPP-KYIKFILATTEPQ- 540 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~--~~~~Ll~~Le~p~-~~~vlIl~t~~~~- 540 (1342)
..++.++++... ....++++. .....+++|||++.++.. ..+.|...++... ....+|++++...
T Consensus 67 ---~~~~~i~~~~~~--~~~~~~~~~------~~~~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~ 135 (226)
T TIGR03420 67 ---KSAIYLPLAELA--QADPEVLEG------LEQADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPA 135 (226)
T ss_pred ---CcEEEEeHHHHH--HhHHHHHhh------cccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChH
Confidence 123334332211 111222222 233469999999998753 3666766655311 1235666666432
Q ss_pred C--Ch-HHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh---cCCC
Q psy13354 541 K--IP-ITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY---SSEK 611 (1342)
Q Consensus 541 k--l~-~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~---~~~~ 611 (1342)
. .. +.+.+|+ ..+.+++++.++...++..++.+.++.+++++++.|++.++||+|.+.+.++++..+ .++.
T Consensus 136 ~~~~~~~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r~L~~~l~~~~~~~~~~~~~ 215 (226)
T TIGR03420 136 QLPLRLPDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMGSLMALLDALDRASLAAKRK 215 (226)
T ss_pred HCCcccHHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhCCC
Confidence 2 22 6778775 589999999999999999999889999999999999999999999999998886654 3566
Q ss_pred CCHHHHHHHh
Q psy13354 612 ITLNSMQEML 621 (1342)
Q Consensus 612 It~e~V~~~v 621 (1342)
||.+.|.+++
T Consensus 216 i~~~~~~~~~ 225 (226)
T TIGR03420 216 ITIPFVKEVL 225 (226)
T ss_pred CCHHHHHHHh
Confidence 9999998875
No 378
>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.46 E-value=2e-12 Score=156.39 Aligned_cols=214 Identities=18% Similarity=0.192 Sum_probs=142.5
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ ||++|+..++.+++++||+|++....+++...... .+...|+ .+..++
T Consensus 57 ~pt~~~Le~----~lA~l~g~~~~l~~s-sG~~Ai~~al~al~~~Gd~Vl~~~~~Y~~t~~~~~~~l~~~gi--~v~~~d 129 (425)
T PRK06084 57 NPTNDVLEQ----RVAALEGGVGALAVA-SGMAAITYAIQTIAEAGDNIVSVAKLYGGTYNLLAHTLPRIGI--ETRFAA 129 (425)
T ss_pred CchHHHHHH----HHHHHhCCCceeEeh-hHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHhccccee--EEEEEC
Confidence 444556666 899999988888777 99999999999999999999988766664333221 1222343 444344
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.. |++++++++++. +++|++.++++| ...++++|+++|+++|++||+|++|+.+.. ..++. .+|++
T Consensus 130 ~~-----d~e~le~ai~~~-tklV~lesp~NPtG~v~dl~~I~~la~~~~i~vVvD~a~a~~~~-----~~p~~~gaDiv 198 (425)
T PRK06084 130 HD-----DIAALEALIDER-TKAVFCESIGNPAGNIIDIQALADAAHRHGVPLIVDNTVATPVL-----CRPFEHGADIV 198 (425)
T ss_pred CC-----CHHHHHHHhccC-CcEEEEeCCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----CChhhcCCCEE
Confidence 32 899999998764 566666555555 555999999999999999999999986543 22333 37999
Q ss_pred EecCCccCCCCC---eeEEEEechhH-HHHhhcc-------------------------------CCccccCCcHHHHHH
Q psy13354 224 TSTTHKSLRGPR---GGFILMKKKYK-KIINSAV-------------------------------FPGIQGGPLMHVIAA 268 (1342)
Q Consensus 224 v~S~sK~l~gp~---GG~iv~~~~l~-~~l~~~~-------------------------------~~~~~~~~~~~~~~A 268 (1342)
+.|++|+++|+. ||+++.+.... ....... .....|...+|..++
T Consensus 199 v~S~tK~l~G~g~~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~l~~~~a~ 278 (425)
T PRK06084 199 VHSLTKYIGGHGTSIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAFIGRCRVVPLRNMGAALSPFNAF 278 (425)
T ss_pred EECchhcccccccceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHHHHHHHHHHHHhcCCCCCHHHHH
Confidence 999999996543 37776543211 0000000 001223334444443
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 269 KAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 269 aa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+.. ..+ ..+..+.++..+++..+.+.|++.+
T Consensus 279 l~l---rgl-~tl~~R~~~~~~na~~la~~L~~~p 309 (425)
T PRK06084 279 LIL---QGL-ETLALRMERHTENALKVARYLQQHP 309 (425)
T ss_pred HHH---cCc-CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 322 222 2566788999999999999999853
No 379
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=99.46 E-value=3.9e-12 Score=153.56 Aligned_cols=299 Identities=13% Similarity=0.080 Sum_probs=170.8
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc----cCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV----LNP 112 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al----~~p 112 (1342)
.+-.|.+.+++.+.+......+ . .+ ..+...+ +.+++++..+.+. +++++||++|+..+++++ ..+
T Consensus 46 Gh~~p~v~~a~~~~~~~~~~~~---~-~~-~~~~~~~----la~~l~~~~~~~~-v~~~~sGseA~~~al~~ar~~~~~~ 115 (389)
T PRK01278 46 GHAHPHLVEALKEQAEKLWHVS---N-LY-RIPEQER----LAERLVENSFADK-VFFTNSGAEAVECAIKTARRYHYGK 115 (389)
T ss_pred CCCCHHHHHHHHHHHHhcCccc---c-cc-CChHHHH----HHHHHHhhCCCCE-EEEcCCcHHHHHHHHHHHHHHHHhc
Confidence 3455779999888875322111 1 11 2233333 4457887776554 455559999999999877 456
Q ss_pred CC----EEEEeeccCCccchhhHHhhhCCceeEEEEe-cCCCCCC----CCHHHHHHHHHhcCCeEEEEcCCCCC-----
Q psy13354 113 GD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICY-GLNKKEK----IDYKKVEYLAKKNKPKLIIAGASAYS----- 178 (1342)
Q Consensus 113 GD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~-~~~~~~~----id~e~Le~~i~~~~~~liv~~~s~~~----- 178 (1342)
|| +|++.+..+.++...+... .+.......+ +...++. .|++++++.+++ +.++|++.+.+++
T Consensus 116 G~~~r~~vi~~~~~yhg~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~avivep~~~~~G~~~ 192 (389)
T PRK01278 116 GHPERYRIITFEGAFHGRTLATIAA--GGQEKYLEGFGPLVPGFDQVPFGDIEALKAAITP-NTAAILIEPIQGEGGIRP 192 (389)
T ss_pred CCCCCCEEEEECCCcCCCcHHHHhc--cCChhhcccCCCCCCCceEeCCCCHHHHHHhhCC-CeEEEEEecccCCCCCcC
Confidence 76 8888776665553333221 1110000000 1111111 489999998875 5667777665433
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHhhcc
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~~~~ 253 (1342)
...++++|.++|++||++||+||+|. |....+.... ... .+|++ +++|.+++ ...|++++++++++.+....
T Consensus 193 ~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~ 269 (389)
T PRK01278 193 APDEFLKGLRQLCDENGLLLIFDEVQC-GMGRTGKLFAHEWAGVTPDIM--AVAKGIGGGFPLGACLATEEAAKGMTPGT 269 (389)
T ss_pred CCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCcceeecccCCCCCEE--EEehhccCCcceEEEEEcHHHHhccCCCC
Confidence 23379999999999999999999987 3222222111 111 14654 67899942 12399999998888876544
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cE-Eee-CCCCCeEEEEEccCCCCCHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IR-IVS-GGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~-~~~-~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
....+++ ++...+++.+..+.+.+ ....+++.++.+++.+.|+... .. +.. ....+.++++.+.. .+.++
T Consensus 270 ~~~t~~~--~~~~~aaa~a~l~~l~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~--~~~~~ 343 (389)
T PRK01278 270 HGSTYGG--NPLAMAVGNAVLDVILA--PGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVV--PNRDL 343 (389)
T ss_pred CCCCCCc--cHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEec--CHHHH
Confidence 4444443 33444444444444321 1234556666666666665421 11 111 11234566666643 34567
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...++++ ||.+.|.. .+++|++++..++
T Consensus 344 ~~~l~~~-GV~~~p~~----------~~~lR~~p~~~~~ 371 (389)
T PRK01278 344 VQALRDE-GLLTVGAG----------DNVVRLLPPLIIT 371 (389)
T ss_pred HHHHHHC-CeEEeecC----------CCEEEEeCCcccC
Confidence 7777776 99987541 2469998765444
No 380
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.46 E-value=3e-12 Score=154.88 Aligned_cols=237 Identities=20% Similarity=0.180 Sum_probs=152.9
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
++...|.| +.++|++..++.|...+.. +..++.++++||+|+|||++++.+++.+..... .....+.+|..+
T Consensus 22 ~l~~~~~P---~~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~--~~~~v~in~~~~ 96 (394)
T PRK00411 22 VLEPDYVP---ENLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAV--KVVYVYINCQID 96 (394)
T ss_pred hCCCCCcC---CCCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcC--CcEEEEEECCcC
Confidence 34445556 5688998888888777633 344556899999999999999999998853220 011233444443
Q ss_pred cchhhhccCCCccEEEEcc-CCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCC----HHHHHHHHHhhcCCC-Cc
Q psy13354 457 SVCVKIDNGCFMDYIEMDA-ASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLT----HHAFNAMLKTLEEPP-KY 529 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~-~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~----~~~~~~Ll~~Le~p~-~~ 529 (1342)
.+...+.......+..... ......+. +..+.+.+.. .+.+.||+|||+|.+. .+....|++.+++.+ ..
T Consensus 97 ~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~~~~~~ 173 (394)
T PRK00411 97 RTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDE---RDRVLIVALDDINYLFEKEGNDVLYSLLRAHEEYPGAR 173 (394)
T ss_pred CCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHh---cCCEEEEEECCHhHhhccCCchHHHHHHHhhhccCCCe
Confidence 3221111000000000000 00011122 2222222221 2344689999999885 345566666665433 36
Q ss_pred EEEEEEeCCCC---CChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHhc--CCCcchhHHHHHHHhc---CCcHHHHHH
Q psy13354 530 IKFILATTEPQ---KIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNKE--NIKFETSALNLIATGA---QGSMRDALS 599 (1342)
Q Consensus 530 ~vlIl~t~~~~---kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~~--g~~i~~~al~~La~~~---~g~lr~a~~ 599 (1342)
+.+|++++..+ .+.+.+.+|+ ..+.|++++.+++.+++..+++.. ...+++++++.+++.+ .||+|.+++
T Consensus 174 v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ 253 (394)
T PRK00411 174 IGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAID 253 (394)
T ss_pred EEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHH
Confidence 77888888654 4556777776 678999999999999999998753 3468999999999988 899999999
Q ss_pred HHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 600 LTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 600 ~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
.|.++...+ ...||.++|.+++...
T Consensus 254 ll~~a~~~a~~~~~~~I~~~~v~~a~~~~ 282 (394)
T PRK00411 254 LLRRAGLIAEREGSRKVTEEDVRKAYEKS 282 (394)
T ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 998876654 2459999999888655
No 381
>PRK06434 cystathionine gamma-lyase; Validated
Probab=99.46 E-value=6.4e-12 Score=149.27 Aligned_cols=244 Identities=17% Similarity=0.152 Sum_probs=160.4
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++...+||+ .++++.|.+.+++++ ||+.|+.+++.+++++||+|+++...++..+... ..+...|+. ++.+
T Consensus 62 ~~P~~~~lE~----~la~leg~~~av~~s-SG~aAi~~al~all~~GD~Vl~~~~~yg~t~~~~~~~~~~~Gi~--v~fv 134 (384)
T PRK06434 62 GNPTVQAFEE----KYAVLENAEHALSFS-SGMGAITSAILSLIKKGKRILSISDLYGQTFYFFNKVLKTLGIH--VDYI 134 (384)
T ss_pred CChhHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEecCccchHHHHHHHHHHhcCcE--EEEE
Confidence 5676777777 899999999888888 9999999999999999999998776666655443 445666774 4444
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.++.. .+. +.+.++++|++..+.++ ...|+++|+++|++++ +++|.+++.+.. ..+++ .+|+
T Consensus 135 d~~~~~-----~~~--l~~~~tklv~~e~~snpt~~v~Di~~I~~la~~~~--lvVD~t~~s~~~-----~~pl~~gaDi 200 (384)
T PRK06434 135 DTDRLN-----SLD--FDPSNYDLIYAESITNPTLKVPDIKNVSSFCHEND--VIVDATFASPYN-----QNPLDLGADV 200 (384)
T ss_pred CCCChh-----hee--ecCCCeeEEEEEcCCCCCceeecHHHHHHHHHHcC--eEEECCCCCccc-----CCchhcCCCE
Confidence 544211 111 22334567666554444 5559999999999998 467999754322 22333 4899
Q ss_pred EEecCCccCCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
+++|.+|+++|+. ||++++++ ++.+.++.... ..|...++..+++.. ..+ ..+..+.++..+++..+.+.
T Consensus 201 vv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~--~~G~~~~~~~A~l~~---~gL-~tL~~R~~r~~~~a~~~a~~ 274 (384)
T PRK06434 201 VIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRK--TLGSNPDPIQAYLAL---RGL-KTLGLRMEKHNKNGMELARF 274 (384)
T ss_pred EEeecccccCCCCCceEEEEecCcHHHHHHHHHHHH--hcCCCCCHHHHHHHH---hCC-CcHHHHHHHHHHHHHHHHHH
Confidence 9999999997744 58887754 55555553221 223333444444322 222 35677889999999999999
Q ss_pred HHhCC-cE-EeeCC---------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 299 LDQRG-IR-IVSGG---------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 299 L~~~g-~~-~~~~~---------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
|++.. +. +..++ ..+.++.+.++. .+.+.++++.-.+..
T Consensus 275 L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~----~~~~~~f~~~l~l~~ 324 (384)
T PRK06434 275 LRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRS----MEDVHKFIRNLEIPM 324 (384)
T ss_pred HHcCCCccEEECCChHHHHHhcCCCCceEEEEECC----HHHHHHHHHhCCcce
Confidence 99864 32 22221 134567777753 455667777655443
No 382
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=99.46 E-value=1.1e-13 Score=157.88 Aligned_cols=260 Identities=20% Similarity=0.193 Sum_probs=164.4
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEE
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMG 118 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv 118 (1342)
..|++++++..+.. |. ..|+..+...++++ ++++++|.+.+++++ +||.|+..+++++++|++.|++
T Consensus 7 ~~~~m~~a~~~a~~-----gd---~~Yg~D~~~~~l~~----~i~~l~g~e~a~f~~-sGT~An~~al~~~~~~~~~vi~ 73 (290)
T PF01212_consen 7 PTPAMLEAMAAANV-----GD---DAYGEDPTTARLEE----RIAELFGKEAALFVP-SGTMANQLALRAHLRPGESVIC 73 (290)
T ss_dssp S-HHEEHHHHHTTS-----B----CCTTSSHHHHHHHH----HHHHHHTSSEEEEES-SHHHHHHHHHHHHHHTTEEEEE
T ss_pred CCHHHHHHHHcccc-----CC---cccCCChhHHHHHH----HHHHHcCCCEEEEeC-CCChHHHHHHHHHHhcCCceec
Confidence 66778888744432 11 23666666667777 999999999777666 9999999999999999999997
Q ss_pred eeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-----cCCeEEEEcCCCCC------cccCHHHHH
Q psy13354 119 MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-----NKPKLIIAGASAYS------QYIDFERFY 187 (1342)
Q Consensus 119 ~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-----~~~~liv~~~s~~~------~~~~l~~I~ 187 (1342)
....|.............|. ++++++.+++|.+++++|++.+.. ..+++|.+..+++. +..++++|.
T Consensus 74 ~~~aHi~~~E~ga~~~~~G~--~~~~l~~~~~G~l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~ 151 (290)
T PF01212_consen 74 ADTAHIHFDETGAIEELSGA--KLIPLPSDDDGKLTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS 151 (290)
T ss_dssp ETTEHHHHSSTTHHHHHTTC--EEEEEBECTGTBB-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred cccceeeeeccchhhHhcCc--EEEECCCcccCCCCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence 55332222222223345566 667667665599999999999987 34678888776663 333789999
Q ss_pred HHHHHcCCEEEEEcccchhhhhc-CC-CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHH-
Q psy13354 188 HIAKNINSYFMVDMAHYAGLIAA-GE-YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMH- 264 (1342)
Q Consensus 188 ~la~~~gi~LIvDea~~~g~~~~-~~-~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~- 264 (1342)
++|++||+.|+.|+|..+-.... +. .......+|++..|++|.++++.|+++++++++++......... .+.....
T Consensus 152 ~~a~~~gl~lhmDGARl~~a~~~~~~~~~e~~~~~D~v~~~~tK~~g~~~Gavl~~~~~~i~~~~~~~k~~-gg~~~~~G 230 (290)
T PF01212_consen 152 ELAREHGLPLHMDGARLANAAAALGVSLAEIAAGADSVSFGGTKNGGAPGGAVLAGNKEFIAKARRQRKRL-GGGMRQAG 230 (290)
T ss_dssp HHHHHHT-EEEEEETTHHHHHCHHHHHHHHHHTTSSEEEEETTSTT-SSSEEEEEESHHHHHHHHHHHHHH-THHHHHTT
T ss_pred HHHHhCceEEEEehhhHHHhhhcccccHHHHhhhCCEEEEEEEcccccccceEEEechHHHHHHHHHHHHh-ccCeeecc
Confidence 99999999999999864322200 00 00012347999999999997788899999998655433221111 0000000
Q ss_pred HHHH--H-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 265 VIAA--K-AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 265 ~~~A--a-a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
..++ + ..+....++.+ .....+-.++++++.+.|...|+.+.. +..++.+
T Consensus 231 ~~~a~~~~~~~~l~~l~~~-~~~~~~~~~~A~~La~~l~~~~~~~~~-~~~tn~~ 283 (290)
T PF01212_consen 231 VLAAAELYQFAALRALELW-LERARHANAMAKRLAAGLEALGGVLPR-PVETNQV 283 (290)
T ss_dssp HHHHHHHHHHHHHCHEECS-HHHHHCHHHHHHCHHHCHHEECEEEET-TSS-HHH
T ss_pred eeeeechhhHHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHCCCcccC-CCCCcEE
Confidence 1111 0 01122223324 345677788999999999998887543 4444433
No 383
>KOG0730|consensus
Probab=99.46 E-value=3.1e-12 Score=152.05 Aligned_cols=189 Identities=17% Similarity=0.233 Sum_probs=145.2
Q ss_pred cCCCCccccccchhhHHHHHHHHHc-----------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDK-----------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~-----------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
....+|+|+-|++.++.+|++++.. | ..+.++|||||||||||++|+++|++..+
T Consensus 428 ~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~------------- 494 (693)
T KOG0730|consen 428 MPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGM------------- 494 (693)
T ss_pred CCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcC-------------
Confidence 3456899999999999999988742 3 67789999999999999999999998864
Q ss_pred CCCCcchhhhccCCCccEEEEccC------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-----------H
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAA------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH-----------A 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~-----------~ 515 (1342)
+|+.+.+. -..+...+++++..+...+- -|+++||+|.+..+ .
T Consensus 495 ----------------nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR~~aP----~IiFfDEiDsi~~~R~g~~~~v~~RV 554 (693)
T KOG0730|consen 495 ----------------NFLSVKGPELFSKYVGESERAIREVFRKARQVAP----CIIFFDEIDALAGSRGGSSSGVTDRV 554 (693)
T ss_pred ----------------CeeeccCHHHHHHhcCchHHHHHHHHHHHhhcCC----eEEehhhHHhHhhccCCCccchHHHH
Confidence 45555432 12344678888888877643 59999999988432 3
Q ss_pred HHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HHHHHHHh
Q psy13354 516 FNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETS-ALNLIATG 589 (1342)
Q Consensus 516 ~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al~~La~~ 589 (1342)
.+.||.-++-. ..++++|.+||+++.++++|.+ |+ ..+.+++|+.+...++++..+++.. ++++ .++.|++.
T Consensus 555 lsqLLtEmDG~e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp--~~~~vdl~~La~~ 632 (693)
T KOG0730|consen 555 LSQLLTEMDGLEALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMP--FSEDVDLEELAQA 632 (693)
T ss_pred HHHHHHHcccccccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCC--CCccccHHHHHHH
Confidence 56677766643 3467778889999999999998 77 7899999999999999998887655 4454 68889998
Q ss_pred cCC-cHHHHHHHHHHHHhhc
Q psy13354 590 AQG-SMRDALSLTDQAINYS 608 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~~~~ 608 (1342)
+.| +=.++..+++.+..++
T Consensus 633 T~g~SGAel~~lCq~A~~~a 652 (693)
T KOG0730|consen 633 TEGYSGAEIVAVCQEAALLA 652 (693)
T ss_pred hccCChHHHHHHHHHHHHHH
Confidence 765 5566666676666554
No 384
>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.45 E-value=1.6e-12 Score=157.06 Aligned_cols=215 Identities=18% Similarity=0.164 Sum_probs=144.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~~ 146 (1342)
++....+|+ .++++.|.+++++++ ||+.|+.+++.+++++||+|++++..+++.... ...+...|+. +..++
T Consensus 68 ~pt~~~le~----~la~l~g~~~~v~fs-SG~~Ai~~al~~ll~~Gd~VI~~~~~y~~t~~~~~~~l~~~Gi~--v~~vd 140 (437)
T PRK05613 68 NPTVEALEN----RIASLEGGVHAVAFA-SGQAAETAAILNLAGAGDHIVTSPRLYGGTETLFLVTLNRLGIE--VTFVE 140 (437)
T ss_pred ChHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHhcCCCCEEEECCCccHHHHHHHHHHHHhcCeE--EEEEC
Confidence 444455555 999999998888888 999999999999999999999988777766332 2344566764 44444
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFIT 224 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv 224 (1342)
+. .|++++++.+++++..+++.+++|+. ...|+++|+++|+++|+++|+|++++.+... .+.. .+|+++
T Consensus 141 -~~---~d~e~l~~~l~~~tk~V~~e~~~Np~~~v~di~~I~~la~~~gi~livD~t~a~g~~~-----~p~~~GaDivv 211 (437)
T PRK05613 141 -NP---DDPESWQAAVQPNTKAFFGETFANPQADVLDIPAVAEVAHRNQVPLIVDNTIATAALV-----RPLELGADVVV 211 (437)
T ss_pred -CC---CCHHHHHHhCCccCeEEEEECCCCCCCcccCHHHHHHHHHHcCCeEEEECCCcccccc-----ChHHhCCCEEE
Confidence 21 27899999988754444444444443 4569999999999999999999998776441 2233 479999
Q ss_pred ecCCccCCCC-C--eeEEEEechhHH-----------------------------------HHhhccCCccccCCcHHHH
Q psy13354 225 STTHKSLRGP-R--GGFILMKKKYKK-----------------------------------IINSAVFPGIQGGPLMHVI 266 (1342)
Q Consensus 225 ~S~sK~l~gp-~--GG~iv~~~~l~~-----------------------------------~l~~~~~~~~~~~~~~~~~ 266 (1342)
+|+||+++|. . ||+++.+..... .... ......|...+|..
T Consensus 212 ~S~~K~l~G~gd~~gG~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~G~~~~p~~ 290 (437)
T PRK05613 212 ASLTKFYTGNGSGLGGVLIDGGKFDWTVERDGKPVFPYFVTPDPAYHGLKYADLGAPAFGLKARA-GLLRDTGATLSPFN 290 (437)
T ss_pred eeccceecCCCcceeEEEEecCcccccccccccccCCCCCCCccccccccccccchHHHHHHHHH-HHHHhcCCCCCHHH
Confidence 9999999543 2 477775432110 0000 00112233334444
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 267 AAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 267 ~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+.+. ..-+ .-+..+.++..+++..+.+.|++.+
T Consensus 291 a~l~---~rgl-~TL~lR~~~~~~nA~~lA~~L~~hp 323 (437)
T PRK05613 291 AWVT---AQGL-DTLSLRLERHNENAIKVAEFLNNHE 323 (437)
T ss_pred HHHH---Hccc-CcHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4322 2222 2566678899999999999999864
No 385
>KOG1358|consensus
Probab=99.45 E-value=1.1e-12 Score=145.56 Aligned_cols=328 Identities=18% Similarity=0.199 Sum_probs=217.2
Q ss_pred CceeeeecCCCCcHH----HHHHHhHHHHhccccCCC-CCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLA----VMEAQGTLLTNKYAEGYP-GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~----v~eal~~~l~~~~~~g~~-~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.+..+++.||++.. +.+.....+. .|+.|.- .+++|+.-..+..+|+ .+++++|+++.++++ .|.+++
T Consensus 94 ~~~~N~aS~NfL~l~~~~~ike~a~~~lr-kyGvGsCGPrGFYGt~DvHldlE~----~iakF~G~E~aivYs-~gF~ti 167 (467)
T KOG1358|consen 94 KDVLNFASANFLGLIENEEIKEEASFTLR-KYGVGSCGPRGFYGTIDVHLDLEK----RIAKFMGTEDAIVYS-YGFSTI 167 (467)
T ss_pred ceeecccchhhhhhcccHHHHHHHHHHHH-HhCCCCcCCCcccccceeecccHH----HHHHhhCCcceeeec-cccchh
Confidence 445568889998876 7777677775 6765544 4466788888888898 999999999999999 899999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC------------CeEE
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK------------PKLI 170 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~------------~~li 170 (1342)
..++.++...||.+.+.. ..+++....+....- .+..+.++ |.++++..+.+.. .+.+
T Consensus 168 ~S~ipafsKrGDIi~~de---~~nfaIq~GlqlSRS--~i~~Fkhn-----dm~~lerll~E~~~~~~K~~k~~~~Rrfi 237 (467)
T KOG1358|consen 168 ESAIPAFSKRGDIIFVDE---AVNFAIQKGLQLSRS--TISYFKHN-----DMEDLERLLPEQEDEDQKNPKKALTRRFI 237 (467)
T ss_pred hhcchhhhccCcEEEEeh---hhhHHHHHHHhhhhh--eeEEecCC-----CHHHHHHhccCcchhhhhccccccceEEE
Confidence 999999999999999544 444444433333332 45555666 6777766554322 2233
Q ss_pred EEcC--CCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-----CCCC-CCCCCcEEEecCCccCCCCCeeEEEEe
Q psy13354 171 IAGA--SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPN-PVPFADFITSTTHKSLRGPRGGFILMK 242 (1342)
Q Consensus 171 v~~~--s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-----~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~ 242 (1342)
++-. -|++...|+.+|+++..+|...||+||.+++|..+.. .+++ +....|++++|+.-++ +..|||.+++
T Consensus 238 v~EGl~~N~g~i~pl~~iv~lk~Kyk~RvildEs~SfG~lg~~GrGvteH~~v~~~~iDiv~~sm~~al-as~GgFc~G~ 316 (467)
T KOG1358|consen 238 VVEGLYANTGDICPLPEIVKLKNKYKFRVILDESLSFGVLGKTGRGVTEHFGVPITDIDIVTASMETAL-ASGGGFCAGK 316 (467)
T ss_pred EEEeeccCCCcccccHHHHHHHhhheEEEEEecccccccccccCccccccCCCCccceeeeeecccccc-cccCceeecc
Confidence 3321 3444667999999999999999999999999887652 2332 2245799999999888 7778988886
Q ss_pred chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEcc
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~ 321 (1342)
.-+.+.-+-....+.++....|..+.++.......+ +-.+..+.+......+...|... ++.+. +...++++.+.+.
T Consensus 317 ~~i~~hQrLSg~~Y~fSAslPp~la~aa~~ai~i~~-~~p~~~~~L~~k~~~~H~~l~~~s~~~v~-~~~~SPi~hl~l~ 394 (467)
T KOG1358|consen 317 SFIADHQRLSGSGYCFSASLPPYLAGAAIKAILIEE-WNPEIVQPLRAKVAKFHAALSSNSGFIVS-GSPESPIIHLQLE 394 (467)
T ss_pred eeeEeeeeccccceeeeccCchhhhhhHHHHHHHHh-hCcchhhhhhccccccchhhhcCCceEEe-cCcCCceeeeeec
Confidence 644443333445566666656666655544444443 33346677777778888888874 45553 3455777777776
Q ss_pred CCCCC--------HHHHHHHHHHCCceeeeccCC-CCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 322 NKKIT--------GKIAESILESANIICNKNSIP-NDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 322 ~~~~~--------~~~~~~ll~~~GI~v~~~~~p-~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
....+ .+++...+.+ |+.+....+- .....+. +..+|+++++. ++++++.+.+
T Consensus 395 ~~~~s~e~e~~lL~eivd~~i~~-~~ll~~a~~~~~~e~~~~-~pSiri~~~a~----~seeel~ra~ 456 (467)
T KOG1358|consen 395 RSYGSREKEEKLLEEIVDKCIAE-GVLLTRAKYLEKLERCPI-PPSIRICVSAG----MSEEELERAA 456 (467)
T ss_pred ccccchHHHHHHHHHHHHHHHhh-cceehhhhhhhhcccCCC-CCcEEEEEeCC----CCHHHHHHHH
Confidence 53322 3556666666 7777654321 1111111 12499998885 4566665544
No 386
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.45 E-value=2.7e-12 Score=165.56 Aligned_cols=219 Identities=20% Similarity=0.228 Sum_probs=162.7
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|+.+.+|..+++++|+++.+..+.+.+..+...+ .+|+||||+|||++++.+++.+..... |
T Consensus 170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~~~~~~n-~lL~G~pG~GKT~l~~~la~~~~~~~~---------p------ 233 (731)
T TIGR02639 170 VDLTEKAKNGKIDPLIGREDELERTIQVLCRRKKNN-PLLVGEPGVGKTAIAEGLALRIAEGKV---------P------ 233 (731)
T ss_pred hhHHHHHhcCCCCcccCcHHHHHHHHHHHhcCCCCc-eEEECCCCCCHHHHHHHHHHHHHhCCC---------c------
Confidence 468888999999999999999999999888877665 699999999999999999999852110 0
Q ss_pred hhhhccCCCccEEEEccCC------C--cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC---------HHHHHHHHH
Q psy13354 459 CVKIDNGCFMDYIEMDAAS------T--RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------HHAFNAMLK 521 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~------~--~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------~~~~~~Ll~ 521 (1342)
.......++.++.+. . .....++++++++... .+-|++|||+|.+. .+..+.|..
T Consensus 234 ----~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~----~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~ 305 (731)
T TIGR02639 234 ----ENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKE----PNAILFIDEIHTIVGAGATSGGSMDASNLLKP 305 (731)
T ss_pred ----hhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHhcc----CCeEEEEecHHHHhccCCCCCccHHHHHHHHH
Confidence 000012345555321 1 1123566666665432 34699999999773 235677888
Q ss_pred hhcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcCC
Q psy13354 522 TLEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQG 592 (1342)
Q Consensus 522 ~Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~g 592 (1342)
++++ ..+.+|.+||..+ ...+++.+|++.+.+.+|+.++..++|+..... +++.++++++..+++.++.
T Consensus 306 ~l~~--g~i~~IgaTt~~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~r 383 (731)
T TIGR02639 306 ALSS--GKLRCIGSTTYEEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSAR 383 (731)
T ss_pred HHhC--CCeEEEEecCHHHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhc
Confidence 8876 4688888888632 457799999999999999999999999976654 5678999999999998754
Q ss_pred ------cHHHHHHHHHHHHhhcC--------CCCCHHHHHHHhcc
Q psy13354 593 ------SMRDALSLTDQAINYSS--------EKITLNSMQEMLSI 623 (1342)
Q Consensus 593 ------~lr~a~~~L~kl~~~~~--------~~It~e~V~~~v~~ 623 (1342)
-+++++.+++.+..... ..|+.++|.+++..
T Consensus 384 yi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~ 428 (731)
T TIGR02639 384 YINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAK 428 (731)
T ss_pred ccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHH
Confidence 37889999988765321 22888888887754
No 387
>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.45 E-value=1.6e-12 Score=156.92 Aligned_cols=214 Identities=18% Similarity=0.188 Sum_probs=141.4
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++....|++ .++++.|.+.+++++ ||+.|+..++.+++.+||+|++....+++...... .+...|+ +++.++
T Consensus 68 ~p~~~~Le~----~lA~l~g~~~av~~s-SG~aAi~~al~all~~Gd~Vv~~~~~y~~t~~~~~~~l~~~Gi--~v~~vd 140 (436)
T PRK07812 68 NPTQDVVEQ----RIAALEGGVAALLLA-SGQAAETFAILNLAGAGDHIVSSPRLYGGTYNLFHYTLPKLGI--EVSFVE 140 (436)
T ss_pred CchHHHHHH----HHHHHhCCCeEEEEc-cHHHHHHHHHHHHhCCCCEEEEeCCcchHHHHHHHHHhhcCeE--EEEEEC
Confidence 455556666 999999999888888 99999999999999999999988766655433222 2333454 555443
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
+. .|++.++++++++ +++|++..++++ ...|+++|+++|+++|+++|+|++|+.+.. ..++. .+|++
T Consensus 141 -d~---~d~e~l~~ai~~~-tklV~ie~~sNp~G~v~Dl~~I~~la~~~gi~liVD~t~a~~~~-----~~pl~~GaDiv 210 (436)
T PRK07812 141 -DP---DDLDAWRAAVRPN-TKAFFAETISNPQIDVLDIPGVAEVAHEAGVPLIVDNTIATPYL-----IRPLEHGADIV 210 (436)
T ss_pred -CC---CCHHHHHHhCCCC-CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----CCchhcCCCEE
Confidence 21 2899999888764 455555444444 555999999999999999999999876544 22333 48999
Q ss_pred EecCCccCCCCCe---eEEEEechhH------------------------------HHHhhccCCccccCCcHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMKKKYK------------------------------KIINSAVFPGIQGGPLMHVIAAKA 270 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~~~l~------------------------------~~l~~~~~~~~~~~~~~~~~~Aaa 270 (1342)
+.|+||+++|..+ |+++.+.... ...+.. .....|+..+|..+.+.
T Consensus 211 v~S~tK~lgg~G~~i~G~vv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~G~~l~p~~a~l~ 289 (436)
T PRK07812 211 VHSATKYLGGHGTAIAGVIVDGGTFDWTQGRFPGFTTPDPSYHGVVFAELGPPAYALKARVQ-LLRDLGSAISPFNAFLI 289 (436)
T ss_pred EEecccccCCCCCeEEEEEEcCCccccccccccccccCCcccccchhhhcchhHHHHHHHHH-HHHhcCCCCCHHHHHHH
Confidence 9999999954432 5555433110 001100 00122333344433322
Q ss_pred HHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 271 VAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 271 ~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
...+ .-+..+.++..+++..+.+.|++.+
T Consensus 290 ---~rgl-~tL~~R~~~~~~nA~~la~~L~~~p 318 (436)
T PRK07812 290 ---AQGL-ETLSLRIERHVANAQRVAEFLEARD 318 (436)
T ss_pred ---hcCc-CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 2222 2566788999999999999999863
No 388
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=99.45 E-value=1.1e-11 Score=149.93 Aligned_cols=295 Identities=13% Similarity=0.131 Sum_probs=170.9
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN----- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~----- 111 (1342)
.+-.|.+.+++.+.+. .+... . .. ...+...+ +.++++++.+.+.+.++ +||++|+..++.....
T Consensus 55 Gh~~p~v~~ai~~~~~-~~~~~--~-~~-~~~~~~~~----l~~~l~~~~~~~~~~~~-~SGseA~e~Alk~a~~~~~~~ 124 (396)
T PRK04073 55 GHRHPKIIQALKDQAD-KVTLT--S-RA-FHSDQLGP----WYEKVAKLTGKDMVLPM-NTGAEAVETAIKAARRWAYDV 124 (396)
T ss_pred CCCCHHHHHHHHHHHh-hcccc--c-cc-cCCHHHHH----HHHHHHhcCCCCeEEEc-CChHHHHHHHHHHHHHHhhhc
Confidence 3456779999888875 33221 1 11 12233333 44588888776655554 5999999999987631
Q ss_pred ----CC-CEEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 112 ----PG-DTIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 112 ----pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
+| ++|++....+.+..... +...+.. ..+..++.+ |++++++.+.+ +.+++++.+..
T Consensus 125 ~g~~~~r~~ii~~~~~~HG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~-~~~~viiep~~ 196 (396)
T PRK04073 125 KGVEPNKAEIIACEGNFHGRTMAA--VSLSSEEEYKRGFGPMLPGIKKIPYG-----DLEALKAAITP-NTAAFLVEPIQ 196 (396)
T ss_pred cCCCCCCCEEEEECCCcCCCCHHH--HhhcCCcccccCCCCCCCCceEeCCC-----CHHHHHHhccc-CeEEEEEcCcc
Confidence 34 67777654443332111 1111100 011222332 78999988865 45677776654
Q ss_pred CC-c-cc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--CeeEEEEechh
Q psy13354 177 YS-Q-YI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--RGGFILMKKKY 245 (1342)
Q Consensus 177 ~~-~-~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~GG~iv~~~~l 245 (1342)
++ + .. .+++|.++|++||+++|+||+|.. ....+... .... .+|+++ ++|.++++ +.|++++++++
T Consensus 197 ~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g-~g~~g~~~~~~~~~~~pdi~~--~sK~lg~gg~~ig~~~~~~~i 273 (396)
T PRK04073 197 GEAGINIPPEGFLKAARELCKEENVLFIADEIQTG-LGRTGKLFACDWDNVTPDMYI--LGKALGGGVFPISCVAANRDI 273 (396)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhC-CCcCcHHHHhhhcCCCCCEEE--ecccccCCCCcceEEEEcHHH
Confidence 44 1 11 389999999999999999999872 11111111 1111 257665 57999432 22999999999
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRNKK 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~~~ 324 (1342)
++.+........+++ ++...+++.+.++.+.+ +.+.++..++++++.+.|++.+...+. ....+.++++.+..
T Consensus 274 ~~~~~~~~~~~t~~~--~~~~~aaa~aaL~~~~~--~~l~~~~~~~~~~l~~~L~~l~~~~i~~~~~~g~~~~~~~~~-- 347 (396)
T PRK04073 274 LGVFTPGSHGSTFGG--NPLACAVSIAALEVLEE--EKLPERSLELGEYFKEQLKEIDNPMIKEVRGRGLFIGVELNE-- 347 (396)
T ss_pred HhhhcCCCCCCCCCC--CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhcCCcccceecceEEEEEEecc--
Confidence 888865433333333 23334444444444321 134567778889999999876432111 12235677777653
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.++...+++ +||.+.+. + .+.+|++.+...+.
T Consensus 348 ~~~~~~~~l~~-~Gv~~~~~-------~---~~~iRi~p~l~~t~ 381 (396)
T PRK04073 348 PARPYCEALKE-EGLLCKET-------H---ETVIRFAPPLVITK 381 (396)
T ss_pred hHHHHHHHHHH-CCeEEecC-------C---CCEEEEECCcccCH
Confidence 23456666655 59998742 1 24699987665553
No 389
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=99.44 E-value=1.4e-11 Score=143.40 Aligned_cols=271 Identities=15% Similarity=0.128 Sum_probs=180.4
Q ss_pred CCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-CCCEEEEee----ccCCccchh-hHHhhh
Q psy13354 62 KRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN-PGDTIMGMS----LQEGGHLTH-GMMLNM 135 (1342)
Q Consensus 62 ~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~-pGD~Vlv~~----~~~~~~~s~-~~~~~~ 135 (1342)
+..|++.+....|++ .+++++|.+.++.+. +|..+...+++.+++ |||++.+.. +.+..++.. ......
T Consensus 67 DD~Y~gdpSv~~Lee----~vael~G~E~alpth-qGRgaE~Il~~~~~~~~g~e~g~~~~~~~v~hn~~fett~g~a~l 141 (467)
T TIGR02617 67 DEAYSGSRSYYALAE----SVKNIFGYQYTIPTH-QGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQI 141 (467)
T ss_pred CcccccCchHHHHHH----HHHHHhCCceEEECC-CCchHHHHHHHhhcccccccccccccccccceEEEEecchHHHHH
Confidence 344666777778888 888899999877777 889999999999988 788777422 134444443 345566
Q ss_pred CCceeEEEEe--------cCCCCCCCCHHHHHHHHHhcC---CeEEE---EcCCCCC---cccCHHHHHHHHHHcCCEEE
Q psy13354 136 SGKWFNSICY--------GLNKKEKIDYKKVEYLAKKNK---PKLII---AGASAYS---QYIDFERFYHIAKNINSYFM 198 (1342)
Q Consensus 136 ~g~~~~~v~~--------~~~~~~~id~e~Le~~i~~~~---~~liv---~~~s~~~---~~~~l~~I~~la~~~gi~LI 198 (1342)
.|.....+.. +...+|.+|++++++.+++.. ...+. +++..-+ +...++++.++|++||+.++
T Consensus 142 ~G~~~~~l~~~ea~~~~~~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvslenlr~V~~la~~~GIplh 221 (467)
T TIGR02617 142 NGCTARNVYTKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLANLKAVYEIAKKYDIPVV 221 (467)
T ss_pred cCceeecccchhhcccccCCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHHHHHHHHHHHHHcCCcEE
Confidence 6764443321 122357899999999998632 22222 2222222 33478899999999999999
Q ss_pred EEcccchh-hh--------hcCCCCCC-----CCCCcEEEecCCccCCCCCeeEEEEech----hHHHHhhcc----CCc
Q psy13354 199 VDMAHYAG-LI--------AAGEYPNP-----VPFADFITSTTHKSLRGPRGGFILMKKK----YKKIINSAV----FPG 256 (1342)
Q Consensus 199 vDea~~~g-~~--------~~~~~~~~-----l~~~Divv~S~sK~l~gp~GG~iv~~~~----l~~~l~~~~----~~~ 256 (1342)
.|+|..+- +. +.+..... +..+|.+++|++|.+++|.||+++++++ +.+.++... ..-
T Consensus 222 LDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglgApvGg~Lag~d~~~~~l~~~~~~~~i~~EGf~ 301 (467)
T TIGR02617 222 MDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAMVPMGGLLCFKDDSFFDVYTECRTLCVVQEGFP 301 (467)
T ss_pred EEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCCCcccceEEecchhHHHHHHHHHhhcccccCCc
Confidence 99986542 21 11221111 2457999999999998899999999875 233333321 112
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-------C-CCHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-------K-ITGK 328 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-------~-~~~~ 328 (1342)
++|+.....+.|++..+.+... .++........++|.+.|.+.|++++. .++|-++++.... . ....
T Consensus 302 tYGGlagrd~ea~a~Gl~e~~~---~~yl~~ri~qv~yl~~~L~~~Gvpi~~--~Gghav~iDa~~~lphip~~~fpa~a 376 (467)
T TIGR02617 302 TYGGLEGGAMERLAVGLYDGMN---LDWLAYRINQVQYLVNGLEEIGVVCQQ--AGGHAAFVDAGKLLPHIPADQFPAHA 376 (467)
T ss_pred CcCchhHHHHHHHHhhhhhccc---HHHHHHHHHHHHHHHHHHHhCCCcEEe--cCccEEEEehhhhCCCCChhhCcHHH
Confidence 3455444556666666776654 345666778889999999999999866 7788888875331 1 2356
Q ss_pred HHHHHHHHCCceee
Q psy13354 329 IAESILESANIICN 342 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~ 342 (1342)
++..+..+.||-..
T Consensus 377 l~~~ly~~~GiR~~ 390 (467)
T TIGR02617 377 LACELYKVAGIRAV 390 (467)
T ss_pred HHHHHHHHcCcceE
Confidence 77777788888654
No 390
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.44 E-value=7.6e-12 Score=151.62 Aligned_cols=203 Identities=14% Similarity=0.155 Sum_probs=147.1
Q ss_pred CCccccccchhhHHHHHHHH--------HcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 388 SNFNTLIGQNHISKSLINAL--------DKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l--------~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|+++.|++.+++.+.+.. ..| ..+.++|||||||||||++|+++|++++.
T Consensus 225 ~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~------------------- 285 (489)
T CHL00195 225 EKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQL------------------- 285 (489)
T ss_pred CCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC-------------------
Confidence 46899999998887776532 122 56788999999999999999999999863
Q ss_pred hhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH------------HHHHHHH
Q psy13354 459 CVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH------------HAFNAML 520 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~------------~~~~~Ll 520 (1342)
.++.++.+. ..+...+++++..+... .+-||+|||+|.+.. ...+.|+
T Consensus 286 ----------~~~~l~~~~l~~~~vGese~~l~~~f~~A~~~----~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL 351 (489)
T CHL00195 286 ----------PLLRLDVGKLFGGIVGESESRMRQMIRIAEAL----SPCILWIDEIDKAFSNSESKGDSGTTNRVLATFI 351 (489)
T ss_pred ----------CEEEEEhHHhcccccChHHHHHHHHHHHHHhc----CCcEEEehhhhhhhccccCCCCchHHHHHHHHHH
Confidence 244444321 11234577777665543 345999999996521 1345677
Q ss_pred HhhcCCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCC-cchhHHHHHHHhcCC-cHH
Q psy13354 521 KTLEEPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIK-FETSALNLIATGAQG-SMR 595 (1342)
Q Consensus 521 ~~Le~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~-i~~~al~~La~~~~g-~lr 595 (1342)
..+++....+++|.+||.++.+++++.+ |+ ..+.++.|+.++..++++.++++.+.. .++..++.|++.+.| +-.
T Consensus 352 ~~l~~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGA 431 (489)
T CHL00195 352 TWLSEKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGA 431 (489)
T ss_pred HHHhcCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHH
Confidence 7888777778888999999999999976 67 789999999999999999999886543 345668888888755 666
Q ss_pred HHHHHHHHHHhhc---CCCCCHHHHHHHhcc
Q psy13354 596 DALSLTDQAINYS---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 596 ~a~~~L~kl~~~~---~~~It~e~V~~~v~~ 623 (1342)
++.+.+..+...+ +..+|.+++..++..
T Consensus 432 dI~~lv~eA~~~A~~~~~~lt~~dl~~a~~~ 462 (489)
T CHL00195 432 EIEQSIIEAMYIAFYEKREFTTDDILLALKQ 462 (489)
T ss_pred HHHHHHHHHHHHHHHcCCCcCHHHHHHHHHh
Confidence 6666666554433 345888888777643
No 391
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=99.43 E-value=8.4e-12 Score=150.75 Aligned_cols=306 Identities=15% Similarity=0.123 Sum_probs=174.9
Q ss_pred Cceeeeec--C---CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIAS--E---NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~--~---n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.|.+.++ . .+-.|.+.+++.+.+...+..+ .. + ..+.. .++.++++++.+.+.+.+ .+||++|+
T Consensus 36 ~ylD~~~g~~~~~lGh~~p~v~~a~~~~~~~~~~~~---~~-~-~~~~~----~~la~~L~~~~~~~~~~f-~~SGseA~ 105 (397)
T TIGR03246 36 EYIDFAGGIAVNALGHAHPELVKALIEQADKLWHIG---NG-Y-TNEPV----LRLAKKLVDATFADKVFF-CNSGAEAN 105 (397)
T ss_pred EEEECCcCHhhccCCCCCHHHHHHHHHHHHhccccc---Cc-c-CCHHH----HHHHHHHHhhCCCCEEEE-eCCcHHHH
Confidence 44655443 2 3345679999888885322111 11 1 12223 335558888877665544 44999999
Q ss_pred HHHHHHcc-------CC-CCEEEEeeccCCccchhhHHhhhCCc----------eeEEEEecCCCCCCCCHHHHHHHHHh
Q psy13354 103 QAVFFSVL-------NP-GDTIMGMSLQEGGHLTHGMMLNMSGK----------WFNSICYGLNKKEKIDYKKVEYLAKK 164 (1342)
Q Consensus 103 ~~al~al~-------~p-GD~Vlv~~~~~~~~~s~~~~~~~~g~----------~~~~v~~~~~~~~~id~e~Le~~i~~ 164 (1342)
..+++... ++ .+.|+..+-.+.+..... +...+. ...+..++.+ |++++++.+.+
T Consensus 106 e~Alk~ar~~~~~~~~~~r~~ii~~~~~yHG~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~ 178 (397)
T TIGR03246 106 EAALKLARRYALDKHGADKSEIVAFKNSFHGRTLFT--VSVGGQPKYSQGFAPLPGGIKHAPYN-----DLAAAKALISD 178 (397)
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHH--HHhcCCcccccCCCCCCCceEEeCCC-----CHHHHHHHhcc
Confidence 99999761 12 345665554433332111 111110 0012223333 88999998864
Q ss_pred cCCeEEEEcCCCCC------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-C
Q psy13354 165 NKPKLIIAGASAYS------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-P 234 (1342)
Q Consensus 165 ~~~~liv~~~s~~~------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p 234 (1342)
+.++|++.+.+.+ ...++++|.++|++||+++|+||+| .|+...+.... .+. .+|++ +++|.+++ .
T Consensus 179 -~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~-tG~Gr~G~~~a~~~~gv~pDi~--t~~K~lggG~ 254 (397)
T TIGR03246 179 -KTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQ-TGVGRTGELYAYMHYGVTPDIL--TSAKALGGGF 254 (397)
T ss_pred -CeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechh-hcCCccccchhhhhcCCCCCEE--EeehhhhCCc
Confidence 4566666553322 2336999999999999999999998 44422222211 111 25776 56799942 1
Q ss_pred CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeC-CC
Q psy13354 235 RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSG-GT 311 (1342)
Q Consensus 235 ~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~-~~ 311 (1342)
+-|++++++++++.+.......++++ +|..++++.+.++... -.++.+++.++.+++.+.|++.+ +.+... ..
T Consensus 255 pigav~~~~~i~~~~~~~~~~~t~~~--~p~~~aaa~a~l~~~~--~~~l~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg 330 (397)
T TIGR03246 255 PIGAMLTTTEIAAHLKVGTHGTTYGG--NPLACAVAGKVLDLVN--TPELLAGVKQRHDLFVDGLEKINARYNVFSEIRG 330 (397)
T ss_pred ceeEEEEcHHHHHhccCCCcCCCCCC--CHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHhcCCCeEeeec
Confidence 22889999999888865433344432 3344555555555543 13467888899999999998754 221111 11
Q ss_pred CCeEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 312 KSHIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 312 ~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.++.+.+... .....+...+++ +||++.+. + .+.+|++.+..++.
T Consensus 331 ~G~~~~i~~~~~~~~~~~~~~~~l~~-~Gv~~~~~---g-------~~~lR~~p~~~~t~ 379 (397)
T TIGR03246 331 KGLLIGAVLTEAYQGKAKQFVNAAAE-EGVIALIA---G-------PNVVRFAPSLVISD 379 (397)
T ss_pred CceEEEEEEcCchhhHHHHHHHHHHH-CCeEEeec---C-------CCEEEEeCCCCCCH
Confidence 234444544321 123455665555 59998752 1 24699987776654
No 392
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=99.43 E-value=2.4e-12 Score=135.64 Aligned_cols=160 Identities=25% Similarity=0.349 Sum_probs=113.5
Q ss_pred HHHHHHHHh--CCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCC--C
Q psy13354 78 AINRLKKIF--NAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEK--I 153 (1342)
Q Consensus 78 ~~~~la~~~--g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~--i 153 (1342)
+++.+++++ +.+.+++++ +|+.|+..+++++..++++|++....++++.. ......|..+.. ++.+.++. .
T Consensus 5 ~~~~l~~~~~~~~~~~~~~~-~~t~a~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~g~~~~~--v~~~~~~~~~~ 79 (170)
T cd01494 5 LEEKLARLLQPGNDKAVFVP-SGTGANEAALLALLGPGDEVIVDANGHGSRYW--VAAELAGAKPVP--VPVDDAGYGGL 79 (170)
T ss_pred HHHHHHHHcCCCCCcEEEeC-CcHHHHHHHHHHhCCCCCEEEEeecccceehh--hHHHhcCCEEEE--eccCCCCccch
Confidence 455899999 666777777 99999999999999889999988866665542 344556664444 45443332 2
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccC
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSL 231 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l 231 (1342)
+.+.+++.....+++++++++++++ ...++++|+++|+++|+++|+|++|..+.............+|++++|+||++
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~d~~~~s~~K~~ 159 (170)
T cd01494 80 DVAILEELKAKPNVALIVITPNTTSGGVLVPLKEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEGGADVVTFSLHKNL 159 (170)
T ss_pred hhhhhhhccccCceEEEEEecCcCCCCeEcCHHHHHHHHHHcCCEEEEecccccccccccccccccccCCEEEEEccccc
Confidence 3335555555556788887766655 33478999999999999999999998776643221122234799999999999
Q ss_pred CCCCeeEEEEe
Q psy13354 232 RGPRGGFILMK 242 (1342)
Q Consensus 232 ~gp~GG~iv~~ 242 (1342)
+++.+|+++++
T Consensus 160 ~~~~~G~l~~~ 170 (170)
T cd01494 160 GGEGGGVVIVK 170 (170)
T ss_pred CCCceEEEEeC
Confidence 66444998764
No 393
>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=99.43 E-value=3.3e-12 Score=154.51 Aligned_cols=215 Identities=20% Similarity=0.204 Sum_probs=143.5
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~ 145 (1342)
+++....|++ .++++.|.+++++++ ||+.|+..++.+++++||+|+++...|++.+... ..+...|+ +++.+
T Consensus 62 ~~p~~~~Le~----~lA~leg~~~al~~~-sG~~Ai~~al~~ll~~GD~Vlv~~~~y~~t~~~~~~~~~~~Gv--~v~~v 134 (431)
T PRK08248 62 MNPTTDVFEK----RIAALEGGIGALAVS-SGQAAITYSILNIASAGDEIVSSSSLYGGTYNLFAHTLPKLGI--TVKFV 134 (431)
T ss_pred CCchHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEccCchhhHHHHHHHHHHhCCE--EEEEE
Confidence 3555566666 899999988888877 9999999999999999999998887776554433 33455666 45555
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Di 222 (1342)
+.. |+++++++++++ +++|+++.+++| ...|+++|+++|+++|+++|+|++++.+.. ..+++ .+|+
T Consensus 135 d~~-----d~e~l~~ai~~~-tklV~l~sp~NPtG~v~di~~I~~la~~~gi~vIvD~t~a~~~~-----~~pl~~gaDi 203 (431)
T PRK08248 135 DPS-----DPENFEAAITDK-TKALFAETIGNPKGDVLDIEAVAAIAHEHGIPLIVDNTFASPYL-----LRPIEHGADI 203 (431)
T ss_pred CCC-----CHHHHHHhcCCC-CeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEeCCCCcccc-----CChhHcCCCE
Confidence 543 899999988764 556666555445 445999999999999999999999864322 12223 4799
Q ss_pred EEecCCccCCCCC---eeEEEEechhH-----------------------HHH------hh-c-cCCccccCCcHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMKKKYK-----------------------KII------NS-A-VFPGIQGGPLMHVIAA 268 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~~~l~-----------------------~~l------~~-~-~~~~~~~~~~~~~~~A 268 (1342)
++.|++|+++|+. ||+++.+.+.. +.+ .. . ......|...+|..+.
T Consensus 204 vv~S~tK~lgg~g~~~Gg~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ 283 (431)
T PRK08248 204 VVHSATKFIGGHGTSIGGVIVDSGKFDWKGSGKFPGLTEPDPSYHGLVYTDAVGEAAYITKARVQLLRDLGAALSPFNSF 283 (431)
T ss_pred EEEcCccccCCCCCceEEEEEeCCccccccccccccccCCccccccchhhhhhchhhHHHHHHHHHHHhcCCCCCHHHHH
Confidence 9999999995543 26555443211 000 00 0 0011223333444333
Q ss_pred HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 269 KAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 269 aa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
+. .+-+ .-+..+.++..+++..+.+.|++.+
T Consensus 284 l~---~rgl-~tl~~R~~~~~~nA~~la~~L~~~p 314 (431)
T PRK08248 284 LL---LQGL-ETLHLRMERHSENALAVAKFLEEHE 314 (431)
T ss_pred HH---hcCc-CcHHHHHHHHHHHHHHHHHHHHhCC
Confidence 22 2222 2455678899999999999999863
No 394
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=99.43 E-value=5e-12 Score=140.34 Aligned_cols=164 Identities=21% Similarity=0.220 Sum_probs=127.6
Q ss_pred CCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhC
Q psy13354 58 GYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMS 136 (1342)
Q Consensus 58 g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~ 136 (1342)
|+..++ .+++..+.+|+ +++.+-|.-.++.+. ||+.|+..++..+.++||+|+.++.-|++....... +...
T Consensus 53 G~iYsR--i~NPT~~vlE~----RiAaLEGG~aa~a~a-SG~AA~~~ai~~la~aGD~iVss~~LYGGT~~lf~~tl~~~ 125 (426)
T COG2873 53 GNIYTR--IMNPTTDVLEE----RIAALEGGVAALAVA-SGQAAITYAILNLAGAGDNIVSSSKLYGGTYNLFSHTLKRL 125 (426)
T ss_pred Cceeee--ccCchHHHHHH----HHHHhhcchhhhhhc-cchHHHHHHHHHhccCCCeeEeeccccCchHHHHHHHHHhc
Confidence 444333 35677778888 899888877777777 999999999999999999999998888887765543 4677
Q ss_pred CceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC
Q psy13354 137 GKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 137 g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
|+.+.++ +.+ |++.+++++.++++.+++-+-+|+. ...|+++|+++||++|+++|||...+...+ ..
T Consensus 126 Gi~v~fv--d~~-----d~~~~~~aI~~nTkavf~EtigNP~~~v~Die~ia~iAh~~gvpliVDNT~atpyl-----~r 193 (426)
T COG2873 126 GIEVRFV--DPD-----DPENFEAAIDENTKAVFAETIGNPGLDVLDIEAIAEIAHRHGVPLIVDNTFATPYL-----CR 193 (426)
T ss_pred CcEEEEe--CCC-----CHHHHHHHhCcccceEEEEeccCCCccccCHHHHHHHHHHcCCcEEEecCCCccee-----cc
Confidence 7755544 544 8999999999987777776666666 666999999999999999999998654422 33
Q ss_pred CCC-CCcEEEecCCccCCCCCe----eEEEE
Q psy13354 216 PVP-FADFITSTTHKSLRGPRG----GFILM 241 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~gp~G----G~iv~ 241 (1342)
|++ .+|+|+.|.+||+ |..| |.|+-
T Consensus 194 P~~hGADIVvHS~TK~i-gGhGt~iGG~iVD 223 (426)
T COG2873 194 PIEHGADIVVHSATKYI-GGHGTAIGGVIVD 223 (426)
T ss_pred hhhcCCCEEEEeecccc-cCCccccceEEEe
Confidence 555 4899999999999 5544 66663
No 395
>PRK05642 DNA replication initiation factor; Validated
Probab=99.43 E-value=4e-12 Score=141.48 Aligned_cols=200 Identities=16% Similarity=0.219 Sum_probs=136.6
Q ss_pred Cccccc-cch-hhHHHHHHHHHc--CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 389 NFNTLI-GQN-HISKSLINALDK--KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 389 ~f~~lv-Gq~-~~~~~L~~~l~~--~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
+|++.+ |.. .+++.+.+.... +...+.++|+|++|+|||++++++++++...+
T Consensus 17 tfdnF~~~~~~~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~----------------------- 73 (234)
T PRK05642 17 TFANYYPGANAAALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRG----------------------- 73 (234)
T ss_pred cccccCcCChHHHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCC-----------------------
Confidence 788865 432 222333333222 22235689999999999999999998875211
Q ss_pred CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--HHHHHHHHHhhcCCC-CcEEEEEEeCCCC-
Q psy13354 465 GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--HHAFNAMLKTLEEPP-KYIKFILATTEPQ- 540 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--~~~~~~Ll~~Le~p~-~~~vlIl~t~~~~- 540 (1342)
..+..++..... ....++++... +..+++|||++.+. ....+.|+.+++.-. ....+|++++...
T Consensus 74 ---~~v~y~~~~~~~--~~~~~~~~~~~------~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~ 142 (234)
T PRK05642 74 ---EPAVYLPLAELL--DRGPELLDNLE------QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPR 142 (234)
T ss_pred ---CcEEEeeHHHHH--hhhHHHHHhhh------hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHH
Confidence 112223221100 01122222222 23489999999874 234566777775422 2344666665433
Q ss_pred ---CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc---CCC
Q psy13354 541 ---KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS---SEK 611 (1342)
Q Consensus 541 ---kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~---~~~ 611 (1342)
...+.|.||+ .++.+.+++.+++..+++.++...|+.++++++++|++.+++|+|.+.+.++++..++ +.+
T Consensus 143 ~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d~r~l~~~l~~l~~~~l~~~~~ 222 (234)
T PRK05642 143 ELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRSMSALFDLLERLDQASLQAQRK 222 (234)
T ss_pred HcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCCc
Confidence 3357999998 8999999999999999998898899999999999999999999999999999876543 456
Q ss_pred CCHHHHHHHhc
Q psy13354 612 ITLNSMQEMLS 622 (1342)
Q Consensus 612 It~e~V~~~v~ 622 (1342)
||...+++++.
T Consensus 223 it~~~~~~~L~ 233 (234)
T PRK05642 223 LTIPFLKETLG 233 (234)
T ss_pred CCHHHHHHHhc
Confidence 99999998874
No 396
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.43 E-value=4.4e-12 Score=156.98 Aligned_cols=205 Identities=20% Similarity=0.269 Sum_probs=148.1
Q ss_pred cCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
....+|++++|++++++.+.+.+. ....+.++|||||||||||++++++++.+...
T Consensus 49 ~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~------------- 115 (495)
T TIGR01241 49 KPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVP------------- 115 (495)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCC-------------
Confidence 345689999999999988877664 24667789999999999999999999987631
Q ss_pred CCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-------------- 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------------- 513 (1342)
++.++.+. ..+...++++++.+... .+.||+|||+|.+..
T Consensus 116 ----------------~~~i~~~~~~~~~~g~~~~~l~~~f~~a~~~----~p~Il~iDEid~l~~~r~~~~~~~~~~~~ 175 (495)
T TIGR01241 116 ----------------FFSISGSDFVEMFVGVGASRVRDLFEQAKKN----APCIIFIDEIDAVGRQRGAGLGGGNDERE 175 (495)
T ss_pred ----------------eeeccHHHHHHHHhcccHHHHHHHHHHHHhc----CCCEEEEechhhhhhccccCcCCccHHHH
Confidence 22222211 12334677777766432 345999999998732
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++.. ...+++|.+||.++.+.+++.+ |+ ..+.++.|+.++..++++.+++..... ++..+..+++
T Consensus 176 ~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~ 254 (495)
T TIGR01241 176 QTLNQLLVEMDGFGTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVAR 254 (495)
T ss_pred HHHHHHHhhhccccCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHH
Confidence 2345666666543 3467888899999999999987 55 789999999999999999888765543 3445778888
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
.+.| +.+++.+++..+...+ ...|+.+++++++..
T Consensus 255 ~t~G~sgadl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~ 294 (495)
T TIGR01241 255 RTPGFSGADLANLLNEAALLAARKNKTEITMNDIEEAIDR 294 (495)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 8765 6677777777654432 234999999988754
No 397
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=9.1e-13 Score=137.00 Aligned_cols=129 Identities=27% Similarity=0.319 Sum_probs=117.3
Q ss_pred CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEE---
Q psy13354 476 ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ--- 552 (1342)
Q Consensus 476 ~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~--- 552 (1342)
....++++++++++.+...|. ..+ ++|+++|.|+.+++|+|+++||+||++++||++|+.+.++++||+|||+.
T Consensus 34 ~~~i~Vd~iReii~~~~~~~~--~~k-~iI~~a~~l~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~~~~ 110 (206)
T PRK08485 34 KEEFKIEDAKEVIAEAYIAES--EEK-IIVIAAPSYGIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLIIEKR 110 (206)
T ss_pred CCCCCHHHHHHHHHHHhhCCC--CcE-EEEEchHhhCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhheeccc
Confidence 336889999999999988885 344 45789999999999999999999999999999999999999999999986
Q ss_pred ----------EEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy13354 553 ----------FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS 608 (1342)
Q Consensus 553 ----------i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~ 608 (1342)
++|.+++.+++.+++.+ ++++++...+++++.+++.+.|++|+++++.++.+.|.
T Consensus 111 ~~~~~~~~l~l~l~~l~~~~i~~~L~~-~~ke~~~~~~ea~~lIa~la~~s~r~~l~l~~q~l~~f 175 (206)
T PRK08485 111 KQKKPVKPLDLDLKKLDLKDIYEFLKE-LEKENKLSKEELKELIESLLKECVKYKIPLNEEELEYF 175 (206)
T ss_pred cccccccccccccCCCCHHHHHHHHHH-HHHcccccHHHHHHHHHHHHHHHHHHHcCccHHHHHHH
Confidence 77899999999999998 78889888999999999999999999999999888775
No 398
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=99.42 E-value=3.7e-11 Score=144.58 Aligned_cols=294 Identities=15% Similarity=0.142 Sum_probs=168.9
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCC-CE
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPG-DT 115 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pG-D~ 115 (1342)
..+|.+.+++.+.+.+... .... ...+++.++.+++.+..+.+. +++++||++|+..+++.. ..+| +.
T Consensus 45 ~~~p~v~~a~~~~~~~~~~---~~~~------~~~~~~~~la~~l~~~~~~~~-~~~~~sG~~a~~~A~~~a~~~~g~~~ 114 (377)
T PRK02936 45 HCHPTVTKAVQEQLDDIWH---VSNL------FTNSLQEEVASLLAENSAGDL-VFFCNSGAEANEAALKLARKHTGKSK 114 (377)
T ss_pred CCCHHHHHHHHHHHHhccc---cccc------cCCHHHHHHHHHHHhcCCCCE-EEEeCCcHHHHHHHHHHHHHhcCCCe
Confidence 4556799999988853211 1111 113566666778877766554 455559999999999864 2244 56
Q ss_pred EEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC------Cc
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY------SQ 179 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~------~~ 179 (1342)
|++.+..+.+....... ..+.. .....++.+ |++++++.+.+ +.+++++.+... +.
T Consensus 115 vi~~~~~~Hg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~-~~~~ii~e~i~~~~G~~~~~ 186 (377)
T PRK02936 115 IVTFEQSFHGRTFGTMS--ATGQEKIKEGFGPLLPGFTHVPFN-----DIKALKEVMNE-EVAAVMLEVVQGEGGVIPAD 186 (377)
T ss_pred EEEECCCcCCCcHHhhh--ccCCccccccCCCCCCCceEeCCC-----CHHHHHHhccC-CeEEEEEecccCCCCCccCC
Confidence 77665444333221111 11110 011122222 78999988864 355666544221 13
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHhhccCC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~~~~~~ 255 (1342)
..++++|.++|++||+++|+||+|. |....+.... ... ..|++ ++||++++ ..+|++++++++++.+......
T Consensus 187 ~~~l~~l~~l~~~~~~~lI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~ig~v~~~~~~~~~~~~~~~~ 263 (377)
T PRK02936 187 PAFLQEVQTLCKKFGALLIIDEVQT-GIGRTGTLFAYEQFGLDPDIV--TVAKGLGNGIPVGAMIGKKELGTAFGPGSHG 263 (377)
T ss_pred HHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhhCCCCcEE--EEcccccCCCccEEEEEcHHHHhhccCCCCC
Confidence 3469999999999999999999985 3322222111 111 14654 67899942 1349999999998887654333
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeC-CCCCeEEEEEccCCCCCHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSG-GTKSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~-~~~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
..++ .+...++++. +..+... .++..+++.++.+++++.|.+. ++..... ...+.++|+.++.. ...+..
T Consensus 264 ~t~~-~~~~~~aaa~-a~l~~~~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~~~g~~~~i~~~~~---~~~~~~ 336 (377)
T PRK02936 264 STFG-GNPLAMAAAK-EVLQVIK--QPSFLEEVQEKGEYFLQKLQEELEHLECVKNIRGKGLMIGIECTEE---VAPVIE 336 (377)
T ss_pred CCCC-CCHHHHHHHH-HHHHHHH--hccHHHHHHHHHHHHHHHHHHHHhhCCcEEeEeecceEEEEEecch---HHHHHH
Confidence 3333 2333444444 4444431 1234567777788888877763 2222110 12457889888653 334444
Q ss_pred HHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.++||.+.+. + .+.+|++++..++.
T Consensus 337 ~l~~~gv~v~~~-------g---~~~lRi~p~~~~~~ 363 (377)
T PRK02936 337 QLREEGLLVLSA-------G---PNVIRLLPPLVVTK 363 (377)
T ss_pred HHHHCCeEEecC-------C---CCEEEEECCcccCH
Confidence 556679998752 1 24699987665553
No 399
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.42 E-value=4.2e-12 Score=145.16 Aligned_cols=188 Identities=18% Similarity=0.213 Sum_probs=136.4
Q ss_pred cccccchhhHHHHHHHHH----------cC----CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 391 NTLIGQNHISKSLINALD----------KK----RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~----------~~----~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
++++|++.+++.+.+.+. .| .....++|+||||||||++|+.+++.+...+....
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~----------- 90 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRK----------- 90 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCccc-----------
Confidence 579999999988766432 11 12336899999999999999999998863221100
Q ss_pred cchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccC---------CHHHHHHHHH
Q psy13354 457 SVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHML---------THHAFNAMLK 521 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~~~~~~~Ll~ 521 (1342)
..++.++.+. ......++++++.+ ..-+++|||++.| +.+.++.|++
T Consensus 91 -----------~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a-------~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~ 152 (284)
T TIGR02880 91 -----------GHLVSVTRDDLVGQYIGHTAPKTKEILKRA-------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQ 152 (284)
T ss_pred -----------ceEEEecHHHHhHhhcccchHHHHHHHHHc-------cCcEEEEechhhhccCCCccchHHHHHHHHHH
Confidence 0122222210 01112344555443 1249999999977 3456789999
Q ss_pred hhcCCCCcEEEEEEeCCC--CC---ChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh------
Q psy13354 522 TLEEPPKYIKFILATTEP--QK---IPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG------ 589 (1342)
Q Consensus 522 ~Le~p~~~~vlIl~t~~~--~k---l~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~------ 589 (1342)
.+++...++++|++++.. +. +.+.+.+|+ ..++|++++.+++..++...+++.+..+++++.+.+.++
T Consensus 153 ~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~ 232 (284)
T TIGR02880 153 VMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRT 232 (284)
T ss_pred HHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCC
Confidence 999888888888876543 22 347899999 789999999999999999999999999999999998876
Q ss_pred --cCCcHHHHHHHHHHHHhh
Q psy13354 590 --AQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 590 --~~g~lr~a~~~L~kl~~~ 607 (1342)
.-||.|.+.+.++++...
T Consensus 233 ~~~~GN~R~lrn~ve~~~~~ 252 (284)
T TIGR02880 233 QPHFANARSIRNAIDRARLR 252 (284)
T ss_pred CCCCChHHHHHHHHHHHHHH
Confidence 359999999999987655
No 400
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=99.42 E-value=1.9e-11 Score=139.90 Aligned_cols=309 Identities=16% Similarity=0.145 Sum_probs=187.5
Q ss_pred ccCceeeeecC-----CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHH
Q psy13354 26 QNNNIELIASE-----NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQ 100 (1342)
Q Consensus 26 ~~~~i~l~a~~-----n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~ 100 (1342)
.+++|.+.++- .-..|.+.+++.+....-+. .+..++ .+...++.+++.+..+..+-++|++||++
T Consensus 41 G~~YlDf~~Giav~~lGH~hP~iv~al~~Q~~kl~h---~sn~~~------~~~~~~la~~L~~~s~~~d~vff~NSGaE 111 (404)
T COG4992 41 GREYLDFAAGIAVNNLGHCHPALVEALKEQAEKLWH---VSNLFY------NEPQAELAEKLVELSPFADRVFFCNSGAE 111 (404)
T ss_pred CCEeeeeccceeeeccCCCCHHHHHHHHHHHHHhhh---cccccC------ChHHHHHHHHHHhhCccccEEEEcCCcHH
Confidence 34567665543 23567799998887653332 111222 23445566689988872245566669999
Q ss_pred HHHHHHHHcc---C-CC-CEEEEeeccCCccchh-----hHH--hhhCC-ceeEEEEecCCCCCCCCHHHHHHHHHhcCC
Q psy13354 101 ANQAVFFSVL---N-PG-DTIMGMSLQEGGHLTH-----GMM--LNMSG-KWFNSICYGLNKKEKIDYKKVEYLAKKNKP 167 (1342)
Q Consensus 101 A~~~al~al~---~-pG-D~Vlv~~~~~~~~~s~-----~~~--~~~~g-~~~~~v~~~~~~~~~id~e~Le~~i~~~~~ 167 (1342)
|+++++...- . |+ .+|+.....+.++-.. +.. -...+ ....+..+|++ |++++++++.+++.
T Consensus 112 A~EaAiKlARk~~~~~~k~~Iia~~nsFHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfn-----Di~al~~ai~~~ta 186 (404)
T COG4992 112 ANEAALKLARKYTGDPEKSKIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFN-----DIEALEAAIDEDTA 186 (404)
T ss_pred HHHHHHHHHHHHcCCCCCcEEEEEcCCcCCccceeeeccCChhhccCCCCCCCCceecCCC-----CHHHHHHHhccCeE
Confidence 9999998762 2 22 3666644433322111 111 00000 00112223444 99999999998544
Q ss_pred eEEEEcC-----CCCC-cccCHHHHHHHHHHcCCEEEEEcccch----hhhhcCCCCCCCCCCcEEEecCCccCCCCCe-
Q psy13354 168 KLIIAGA-----SAYS-QYIDFERFYHIAKNINSYFMVDMAHYA----GLIAAGEYPNPVPFADFITSTTHKSLRGPRG- 236 (1342)
Q Consensus 168 ~liv~~~-----s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~----g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G- 236 (1342)
+ |++-+ +..+ ....++++.++|++||+++|.||+|.- |.+.+..+.+.. +||++.+ |.++|..-
T Consensus 187 A-vivEPIQGEgGV~~~~~~fl~~lr~lCd~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~--PDI~tla--K~LgGG~Pi 261 (404)
T COG4992 187 A-VIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKLFAYEHYGVE--PDILTLA--KALGGGFPI 261 (404)
T ss_pred E-EEEecccCCCCCCCCCHHHHHHHHHHHHHhCeEEEEeccccCCCccchHHHHHHhCCC--CCEEEee--ccccCCccc
Confidence 4 44422 2222 334799999999999999999999862 222222222222 5888655 99965333
Q ss_pred eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeC-CCCC
Q psy13354 237 GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSG-GTKS 313 (1342)
Q Consensus 237 G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~-~~~~ 313 (1342)
|++++++.+.+.+....+..++|+ +|..+|++.+..+.+.+ +...++..+...++.+.|.++ .++++.. ..-+
T Consensus 262 gA~la~~~~~~~~~~G~HgSTfGG--NpLacAv~~a~l~~l~~--e~ll~~v~~~g~~~~~~L~~l~~~~~~v~~vRG~G 337 (404)
T COG4992 262 GAMLATEEIASAFTPGDHGSTFGG--NPLACAVALAVLEVLLE--EGLLENVREKGEYLLQRLRELKRRYPLVKEVRGRG 337 (404)
T ss_pred eeeEEchhhhhcCCCCcccCCCCc--CHHHHHHHHHHHHHHcc--hhHHHHHHHHHHHHHHHHHHHhhcCCceeeeecce
Confidence 888887777788888777777776 67777777777777642 345677788888888888874 2332221 1235
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 314 HIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 314 ~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.++-+.+.......++...+.++ |+++.+. +...+|+...-..+
T Consensus 338 LmiGiel~~~~~a~~~~~~~~~~-gvL~~~a----------~~~ViR~~PpL~i~ 381 (404)
T COG4992 338 LMIGIELKEPYRARDIVRALREE-GVLVLPA----------GPNVIRFLPPLVIT 381 (404)
T ss_pred eEEEEEecCcccHHHHHHHHHHC-CeEEecC----------CCCeEEecCCccCC
Confidence 56667776654345677777665 9998743 13458986555433
No 401
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=99.41 E-value=3.7e-11 Score=145.80 Aligned_cols=294 Identities=14% Similarity=0.114 Sum_probs=167.2
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL-------- 110 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~-------- 110 (1342)
..|.+.+++.+.+. .+.. .+. .+ .. +....+++.++++.+.+.+. +++||++|+..++..+.
T Consensus 48 ~~p~v~~a~~~~~~-~~~~--~~~-~~-~~----~~~~~~~~~l~~~~~~~~~~-~~~SGs~A~e~al~~~~~~~~~~~~ 117 (400)
T PTZ00125 48 CHPKILAALINQAQ-KLTL--TSR-AF-YN----DVLGLAEKYITDLFGYDKVL-PMNSGAEAGETALKFARKWGYEVKG 117 (400)
T ss_pred CCHHHHHHHHHHHH-hccc--ccc-cc-cC----HHHHHHHHHHHhCCCCCEEE-EeCCcHHHHHHHHHHHHHHHHhccC
Confidence 57889999888874 3322 111 11 12 23344555888888776555 45599999999998773
Q ss_pred --CCCCEEEEeeccCCccchhhHHhhhCCce-e---------EEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 111 --NPGDTIMGMSLQEGGHLTHGMMLNMSGKW-F---------NSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 111 --~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~-~---------~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
..++.|++.+..+.+...... ...+.. . ....+++ .|++++++.+...+.++|++.+..++
T Consensus 118 ~~~~~~~vl~~~~~~Hg~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~v~~ep~~~~ 190 (400)
T PTZ00125 118 IPENQAKIIFCNGNFSGRTIGAC--SASTDPKCYNNFGPFVPGFELVDY-----NDVEALEKLLQDPNVAAFIVEPIQGE 190 (400)
T ss_pred CCCCCCeEEEECCCcCCccHHHH--hhcCCcchhccCCCCCCCceEeCC-----CCHHHHHHHhCCCCeEEEEEcCccCC
Confidence 134677765544333321111 111100 0 0111222 28999999886445677777554333
Q ss_pred --cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-C-CCC-CCcEEEecCCccCCCCC-e-eEEEEechhHH
Q psy13354 179 --QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-N-PVP-FADFITSTTHKSLRGPR-G-GFILMKKKYKK 247 (1342)
Q Consensus 179 --~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-~-~l~-~~Divv~S~sK~l~gp~-G-G~iv~~~~l~~ 247 (1342)
...+ +++|.++|++||+++|+||+|. |....+... . ... .+|+++ ++|+++++. . |++++++++++
T Consensus 191 ~G~~~~~~~~l~~l~~l~~~~~~lli~Dev~~-g~g~~G~~~~~~~~~~~pd~~~--~sK~l~~g~~~ig~v~~~~~~~~ 267 (400)
T PTZ00125 191 AGVIVPDDGYLKQVYELCKKYNVLLIVDEIQT-GLGRTGKLLAHDHEGVKPDIVL--LGKALSGGLYPISAVLANDDVML 267 (400)
T ss_pred CCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhhHHHhcCCCCCEEE--EcccccCCCcCcEEEEEcHHHHh
Confidence 2233 9999999999999999999985 221111111 0 011 247775 469995432 3 89999999988
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEccCC
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
.+........++. ++...+++.+..+.+.+. ...++..+..+++.+.|.+. ++..... ..+.++++.++..
T Consensus 268 ~~~~~~~~~t~~~--~~~~~~aa~~~l~~i~~~--~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~-~~g~~~~v~~~~~ 342 (400)
T PTZ00125 268 VIKPGEHGSTYGG--NPLACAVAVEALEVLKEE--KLAENAQRLGEVFRDGLKELLKKSPWVKEIR-GKGLLNAIVFDHS 342 (400)
T ss_pred hccCCCCCCCCCc--CHHHHHHHHHHHHHHHhc--CHHHHHHHHHHHHHHHHHHHHhcCCCeEEEe-cccEEEEEEEccC
Confidence 8765333333332 233333333433333211 23456666777777777663 3221111 2456667766532
Q ss_pred --CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 324 --KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 324 --~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
....++...++ ++||.+.+. . ...+|++.+...+
T Consensus 343 ~~~~~~~~~~~l~-~~Gv~v~~~----~------~~~lRi~~~~~~~ 378 (400)
T PTZ00125 343 DGVNAWDLCLKLK-ENGLLAKPT----H------DNIIRFAPPLVIT 378 (400)
T ss_pred cchHHHHHHHHHH-HCCeEEeec----C------CCEEEEECCccCC
Confidence 22345666666 459999753 1 2469999875444
No 402
>PF12169 DNA_pol3_gamma3: DNA polymerase III subunits gamma and tau domain III; InterPro: IPR022754 This domain is found in bacteria and eukaryotes, and is approximately 110 amino acids in length. It is found in association with PF00004 from PFAM. This domain is also present in the tau subunit before it undergoes cleavage. Domains I-III are shared between the tau and the gamma subunits, while most of the DnaB-binding Domain IV and all of the alpha-interacting Domain V are unique to tau. ; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G.
Probab=99.40 E-value=5e-12 Score=129.92 Aligned_cols=133 Identities=26% Similarity=0.370 Sum_probs=114.5
Q ss_pred CCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccccc---CCchh
Q psy13354 612 ITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI---KDSPN 688 (1342)
Q Consensus 612 It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~---~~~~~ 688 (1342)
||.++|.+++|.+..+.++++++++.++|...++..++++..+|.+|..++..|..+||+++.+|..++... ...+.
T Consensus 1 It~e~V~~~lG~v~~~~i~~l~~ai~~~d~~~~l~~~~~l~~~G~d~~~~l~~L~~~~R~ll~~k~~~~~~~~~~~~~~~ 80 (143)
T PF12169_consen 1 ITAEDVREILGLVDEEQIFELLDAILEGDAAEALELLNELLEQGKDPKQFLDDLIEYLRDLLLYKITGDKSNLLELSEEE 80 (143)
T ss_dssp B-HHHHHHHHTHTSTHHHHHHHHHHHTT-HHHHHHHHHHHHHCT--HHHHHHHHHHHHHHHHHHTTSGGGS-SG--CTTT
T ss_pred CCHHHHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhCCchhhcccCCHHH
Confidence 689999999999999999999999999999999999999999999999999999999999999999874222 34556
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccccc
Q psy13354 689 YNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLHNH 744 (1342)
Q Consensus 689 ~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~~~ 744 (1342)
.+.+.+++++||.++|.++++.+.++..++|.+.+|++.+|+.++++|.+.++++.
T Consensus 81 ~~~~~~~a~~~~~~~l~~~~~~l~~~~~~lr~s~~pr~~lE~~llrl~~~~~~~~~ 136 (143)
T PF12169_consen 81 EEKLKELAKKFSPERLQRILQILLEAENELRYSSNPRILLEMALLRLCQLKSLPSP 136 (143)
T ss_dssp HHHHHHHHHHS-HHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTC-----
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHhhcccc
Confidence 77899999999999999999999999999999999999999999999998777543
No 403
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.40 E-value=1.2e-11 Score=149.70 Aligned_cols=211 Identities=12% Similarity=0.209 Sum_probs=142.1
Q ss_pred CCCccccc-cc--hhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 387 PSNFNTLI-GQ--NHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 387 p~~f~~lv-Gq--~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+.+|++.+ |. +.+...+...... |...+.++|||++|+|||++++++++.+....+.
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~------------------- 171 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVSKNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSD------------------- 171 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHHhCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCC-------------------
Confidence 46899965 43 3344455554443 3334568999999999999999999987531111
Q ss_pred ccCCCccEEEEccCCCc--CHHHHH---HHHHHHhhcCccCCceEEEeccCccCC--HHHHHHHHHhhcCCC-CcEEEEE
Q psy13354 463 DNGCFMDYIEMDAASTR--GINEMA---QLLEQTIYAPINARYKIYVIDEVHMLT--HHAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~--~~~~i~---~ii~~~~~~p~~~~~rvviIDE~~~L~--~~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
..+..+++.... -...+. +.++.+. .......+++|||++.+. ...++.|..+++.-. ..-.+|+
T Consensus 172 -----~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~--~~~~~~dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIl 244 (450)
T PRK14087 172 -----LKVSYMSGDEFARKAVDILQKTHKEIEQFK--NEICQNDVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFF 244 (450)
T ss_pred -----CeEEEEEHHHHHHHHHHHHHHhhhHHHHHH--HHhccCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEE
Confidence 112223221100 000111 0111110 112345699999999886 445566666554321 1224677
Q ss_pred EeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCC--CcchhHHHHHHHhcCCcHHHHHHHHHHHH
Q psy13354 535 ATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENI--KFETSALNLIATGAQGSMRDALSLTDQAI 605 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~--~i~~~al~~La~~~~g~lr~a~~~L~kl~ 605 (1342)
+++.+. .+.+.|.||+ .++++.+|+.+++.++|+++++..|. .++++++++|++.++||+|.+.+.|+++.
T Consensus 245 tsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL~~l~ 324 (450)
T PRK14087 245 SSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSVSRLN 324 (450)
T ss_pred ECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHHHHHH
Confidence 777654 3457889987 68999999999999999999999885 69999999999999999999999999987
Q ss_pred hhc--C---CCCCHHHHHHHhcc
Q psy13354 606 NYS--S---EKITLNSMQEMLSI 623 (1342)
Q Consensus 606 ~~~--~---~~It~e~V~~~v~~ 623 (1342)
.++ . ..||.+.|++++..
T Consensus 325 ~~a~~~~~~~~it~~~v~~~l~~ 347 (450)
T PRK14087 325 FWSQQNPEEKIITIEIVSDLFRD 347 (450)
T ss_pred HHHhcccCCCCCCHHHHHHHHhh
Confidence 654 2 45999999988864
No 404
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=99.40 E-value=2.8e-11 Score=146.65 Aligned_cols=295 Identities=15% Similarity=0.113 Sum_probs=166.6
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCC-------
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPG------- 113 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pG------- 113 (1342)
|.+.+++.+.+.. .. ..... |. .++..+++++++++.|.+.++++ +||++|+..+++++..++
T Consensus 58 p~v~~a~~~~~~~-~~--~~~~~-~~-----~~~~~~la~~l~~~~~~~~v~~~-~gg~eA~~~al~~a~~~~~~~~~~~ 127 (396)
T PRK02627 58 PKLVEAIQEQAAK-LI--HTSNL-YY-----IEPQEELAEKLVELSGMDKVFFC-NSGAEANEAAIKLARKYGHKKGIEK 127 (396)
T ss_pred HHHHHHHHHHHhh-cc--ccccc-cC-----CHHHHHHHHHHHhhcCCCEEEEC-CCcHHHHHHHHHHHHHHhcccCCCC
Confidence 5688888887742 21 11111 11 25566677788888887655555 499999999999775433
Q ss_pred CEEEEeeccCCccchhhHHhhhCCcee-EEEEecCCCCC----CCCHHHHHHHHHhcCCeEEEEcCCCCC------cccC
Q psy13354 114 DTIMGMSLQEGGHLTHGMMLNMSGKWF-NSICYGLNKKE----KIDYKKVEYLAKKNKPKLIIAGASAYS------QYID 182 (1342)
Q Consensus 114 D~Vlv~~~~~~~~~s~~~~~~~~g~~~-~~v~~~~~~~~----~id~e~Le~~i~~~~~~liv~~~s~~~------~~~~ 182 (1342)
++|++....+.++...... ..+... .....+...+. ..|++++++.+.+ +++++++.+.+++ ....
T Consensus 128 ~~ii~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~vii~p~~~~~G~~~~~~~~ 204 (396)
T PRK02627 128 PEIITAENSFHGRTLATLS--ATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAITD-KTAAVMLEPIQGEGGVNPADKEY 204 (396)
T ss_pred CeEEEECCCcCcccHHHHH--hcCCccccccCCCCCCCceEeCCCCHHHHHHhcCC-CeEEEEEecccCCCCCccCCHHH
Confidence 5677665544333222111 111100 00001111111 1288999998854 4566666554332 2236
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhhccCCccc
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQ 258 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~ 258 (1342)
+++|.++|++||++||+||+|. |....+.... ... ..|++ ++||.+++. .-|++++++++++.+........+
T Consensus 205 l~~l~~l~~~~~~~lI~DE~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~~~~G~rig~~~~~~~~~~~~~~~~~~~t~ 281 (396)
T PRK02627 205 LQALRELCDENGILLILDEVQT-GMGRTGKLFAYQHYGIEPDIM--TLAKGLGGGVPIGAVLAKEKVADVFTPGDHGSTF 281 (396)
T ss_pred HHHHHHHHHHcCCEEEEechhc-CCCccCceeeehhcCCCCCEE--EEcchhhCCcccEEEEEcHHHHhccCCCCCCCCC
Confidence 9999999999999999999987 2211222111 111 14654 578999421 129999999888877653333333
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEee-CCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVS-GGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~-~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+. ++...+++.+..+.... ++..+++.++.+++.+.|.+.. +.... ....+.++|+.+. ....+++..+++
T Consensus 282 ~~--~~~~~~aa~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~g~~~~i~~~--~~~~~~~~~l~~ 355 (396)
T PRK02627 282 GG--NPLACAAALAVIEIIEE--EGLLENAAEVGEYLRAKLRELLEKYPGIKEVRGLGLMIGIELD--RPAAEIVKKALE 355 (396)
T ss_pred CC--CHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeeeeccCcEEEEEEec--CcHHHHHHHHHH
Confidence 32 33333344444444321 2345666666777777665531 11111 1234567888773 234567777776
Q ss_pred HCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ ||.+.+.. .+++|++++..++
T Consensus 356 ~-Gv~v~~~~----------~~~lRi~~~~~~~ 377 (396)
T PRK02627 356 K-GLLINVTG----------DNVLRLLPPLIIS 377 (396)
T ss_pred C-CeEEeecC----------CCEEEEECCcccC
Confidence 6 99998641 2458998765444
No 405
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=99.39 E-value=4.1e-11 Score=126.85 Aligned_cols=261 Identities=16% Similarity=0.191 Sum_probs=168.5
Q ss_pred CceeeeecC--CCCcHHHHHHHhHHHHhccccCCCCCCcc-------CCcchHHHHHHHHHHHHHHHhCCCCceEecCCH
Q psy13354 28 NNIELIASE--NYTSLAVMEAQGTLLTNKYAEGYPGKRYY-------GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~--n~l~~~v~eal~~~l~~~~~~g~~~~~~~-------~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sG 98 (1342)
..|++.+-+ ..++++.+.|+.+. +.||+-..+. ...+....+.+ .+++++|.+.+-++. ++
T Consensus 16 ~~iNv~PiQrGGiLt~eArkal~E~-----gDGYSvCD~C~~Grldei~kPpI~~F~~----dlaeFlg~D~~R~t~-GA 85 (382)
T COG1103 16 GFINVNPIQRGGILTEEARKALLEW-----GDGYSVCDFCLEGRLDEITKPPIKDFLE----DLAEFLGMDEVRVTA-GA 85 (382)
T ss_pred CccccChhhccCcCCHHHHHHHHHh-----cCCcchhhhhccCccccccCCcHHHHHH----HHHHHhCCceeeecc-cc
Confidence 455554443 56777777775543 3455443332 12232333333 599999999777776 88
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---c---CCeEEEE
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---N---KPKLIIA 172 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~---~~~liv~ 172 (1342)
-+|-++++.+++.+||.|++ ...+|++..-+.++.|.++..++-.--.++.++++...+.+.+ . .|.+.++
T Consensus 86 Re~KfavMhal~~~gd~vV~---D~~aHYttyvAAEragl~v~eVp~tg~Pey~i~~e~y~~viee~~~~~g~~~~lall 162 (382)
T COG1103 86 REAKFAVMHALCKEGDWVVV---DSLAHYTTYVAAERAGLNVAEVPNTGYPEYKITPEGYAEVIEEVKDEGGDPPALALL 162 (382)
T ss_pred hhhHHHHHHHhccCCCEEEE---cCcchHHHHHHHHhcCCeEEecCCCCCCceEecHHHHHHHHHHHHhccCCCceEEEE
Confidence 99999999999999999994 4467777777788888866555422226788898877776643 2 2555544
Q ss_pred cC--CCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe--eEEEEechhHH
Q psy13354 173 GA--SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG--GFILMKKKYKK 247 (1342)
Q Consensus 173 ~~--s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G--G~iv~~~~l~~ 247 (1342)
+. ++|.+..|.+.++++|+++|++++..+||..|.+.- +... .+||+++|.||++ +..| |++..+.++.+
T Consensus 163 Th~Dg~YGNl~Dakkva~ic~e~gvPlllN~AYt~Grmpv----s~ke~g~DFiVgSGHKsm-AAs~PiGvl~~~eE~ae 237 (382)
T COG1103 163 THVDGEYGNLADAKKVAKICREYGVPLLLNCAYTVGRMPV----SGKEIGADFIVGSGHKSM-AASAPIGVLAMSEEWAE 237 (382)
T ss_pred eccCCCcCCchhhHHHHHHHHHcCCceEeecceeeccccc----cccccCCCEEEecCccch-hccCCeeEEeehhHHHH
Confidence 33 677788899999999999999999999999887721 1111 3799999999999 4444 99999999988
Q ss_pred HHhhccCC-c------cccCCcH-HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEee
Q psy13354 248 IINSAVFP-G------IQGGPLM-HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVS 308 (1342)
Q Consensus 248 ~l~~~~~~-~------~~~~~~~-~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~ 308 (1342)
.+-..... + ..|++.. .....+.+++-... +..+ .++.-.+.++++.+.|++.| +....
T Consensus 238 ~V~r~Sg~~~~~KEvellGCT~rGapivTlmASfP~V~-eRVk-rWdeEv~kaR~fv~elEkigg~~qlG 305 (382)
T COG1103 238 IVLRRSGRAFPKKEVELLGCTVRGAPIVTLMASFPHVV-ERVK-RWDEEVEKARWFVAELEKIGGVKQLG 305 (382)
T ss_pred HHHhhcccccccceeeeecccccCchHHHHHhcCHHHH-HHHH-HHHHHHHHHHHHHHHHHHhhhHHHhC
Confidence 76543311 1 1122110 01111221221111 1111 23334567889999999976 66544
No 406
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.39 E-value=2.8e-11 Score=148.23 Aligned_cols=205 Identities=16% Similarity=0.269 Sum_probs=140.7
Q ss_pred Ccccc-ccc--hhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 389 NFNTL-IGQ--NHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 389 ~f~~l-vGq--~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
+|++. +|. ..++..+.....+ +...+.++||||+|+|||++++++++.+....+.
T Consensus 120 tfd~fv~g~~n~~a~~~~~~~~~~~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~--------------------- 178 (450)
T PRK00149 120 TFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPN--------------------- 178 (450)
T ss_pred cccccccCCCcHHHHHHHHHHHhCcCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC---------------------
Confidence 78884 453 3355555555544 2334568999999999999999999998632111
Q ss_pred CCCccEEEEccCCCcC--HH-----HHHHHHHHHhhcCccCCceEEEeccCccCCH--HHHHHHHHhhcCCC-CcEEEEE
Q psy13354 465 GCFMDYIEMDAASTRG--IN-----EMAQLLEQTIYAPINARYKIYVIDEVHMLTH--HAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~--~~-----~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
..++.+++..... .. ...++.+.. ....+++|||++.+.. ..++.|+.+++..- ....+|+
T Consensus 179 ---~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iii 249 (450)
T PRK00149 179 ---AKVVYVTSEKFTNDFVNALRNNTMEEFKEKY------RSVDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVL 249 (450)
T ss_pred ---CeEEEEEHHHHHHHHHHHHHcCcHHHHHHHH------hcCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEE
Confidence 1233333321100 00 111111111 2345999999998843 23455555443211 1123566
Q ss_pred EeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++.+. .+.+.+.||+ .++++.+|+.+++.++|+++++..++.++++++++|++.++||+|.+...|+++..+
T Consensus 250 ts~~~p~~l~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~~l~~~ 329 (450)
T PRK00149 250 TSDRPPKELPGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALNRLIAY 329 (450)
T ss_pred ECCCCHHHHHHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHHHHHHH
Confidence 666543 3557899998 689999999999999999999999999999999999999999999999999998877
Q ss_pred c---CCCCCHHHHHHHhcc
Q psy13354 608 S---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 608 ~---~~~It~e~V~~~v~~ 623 (1342)
+ +..||.+.+++++..
T Consensus 330 ~~~~~~~it~~~~~~~l~~ 348 (450)
T PRK00149 330 ASLTGKPITLELAKEALKD 348 (450)
T ss_pred HHhhCCCCCHHHHHHHHHH
Confidence 5 456999999988864
No 407
>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.
Probab=99.39 E-value=1.3e-11 Score=149.54 Aligned_cols=157 Identities=21% Similarity=0.257 Sum_probs=115.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~~ 146 (1342)
++...+|++ .+++++|.+.+++++ ||+.|+..++.+++.+||+|++....+++.+.. ...+...|+ .++.++
T Consensus 56 ~p~~~~le~----~lA~l~g~~~~v~~~-sG~~Ai~~al~~l~~~Gd~Vl~~~~~y~~t~~~~~~~~~~~G~--~v~~v~ 128 (418)
T TIGR01326 56 NPTTDVLEQ----RIAALEGGVAALAVA-SGQAAITYAILNLAQAGDNIVSSSYLYGGTYNLFKHTLKRLGI--EVRFVD 128 (418)
T ss_pred ChhHHHHHH----HHHHHhCCCeEEEEc-cHHHHHHHHHHHHhCCCCEEEEECCCcHHHHHHHHHHHHHcCc--EEEEEC
Confidence 444455555 899999988777777 999999999999999999999887766654333 233455676 444445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++.++++ +++|+++.+++| ...|+++|+++|+++|+++|+|++|+.+.. ..++. .+|++
T Consensus 129 ~~-----d~~~l~~~l~~~-t~~V~le~p~NPtg~v~dl~~I~~la~~~~i~livD~t~~~~~~-----~~~l~~g~Div 197 (418)
T TIGR01326 129 PD-----DPEEFEKAIDEN-TKAVFAETIGNPAINVPDIEAIAEVAHAHGVPLIVDNTFATPYL-----CRPIDHGADIV 197 (418)
T ss_pred CC-----CHHHHHHhcCcC-CeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCchhhc-----CCchhcCCeEE
Confidence 43 899999988764 556666665555 445999999999999999999999876532 22333 37999
Q ss_pred EecCCccCCCCCe---eEEEEec
Q psy13354 224 TSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~~ 243 (1342)
++|++|++ ++.| |++++++
T Consensus 198 v~S~sK~l-~g~G~~lGg~v~~~ 219 (418)
T TIGR01326 198 VHSATKYI-GGHGTAIGGVIVDG 219 (418)
T ss_pred EECccccc-cCCccceEEEEEec
Confidence 99999999 5544 6666543
No 408
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.39 E-value=1.8e-11 Score=147.80 Aligned_cols=208 Identities=12% Similarity=0.188 Sum_probs=141.0
Q ss_pred CCccccc-cch--hhHHHHHHHHHc-----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 388 SNFNTLI-GQN--HISKSLINALDK-----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 388 ~~f~~lv-Gq~--~~~~~L~~~l~~-----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.+|++.+ |.. .+...+.+..+. +...+.++||||+|+|||++++++++.+.+.+
T Consensus 108 ~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~------------------ 169 (445)
T PRK12422 108 MTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESG------------------ 169 (445)
T ss_pred ccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcC------------------
Confidence 3799965 532 233444444331 23335689999999999999999999986421
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHH--H-hhcCccCCceEEEeccCccCCH--HHHHHHHHhhcCC-CCcEEEE
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQ--T-IYAPINARYKIYVIDEVHMLTH--HAFNAMLKTLEEP-PKYIKFI 533 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~--~-~~~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p-~~~~vlI 533 (1342)
..+..++..... ..+.+.+.. . ..........+++|||++.+.. ..++.|+..++.- .....+|
T Consensus 170 --------~~v~yi~~~~f~--~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~II 239 (445)
T PRK12422 170 --------GKILYVRSELFT--EHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIV 239 (445)
T ss_pred --------CCEEEeeHHHHH--HHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEE
Confidence 123333221100 011111100 0 0011234556999999999853 3445555554321 1223567
Q ss_pred EEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHH-
Q psy13354 534 LATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAI- 605 (1342)
Q Consensus 534 l~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~- 605 (1342)
++++... .+.++|.||+ .++++.+|+.+++..+|++.++..|+.++++++++|++...+|+|.+.+.|++++
T Consensus 240 lts~~~p~~l~~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l~~ 319 (445)
T PRK12422 240 ISSTCAPQDLKAMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLLAK 319 (445)
T ss_pred EecCCCHHHHhhhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 7776643 4567999998 7999999999999999999999999999999999999999999999999999984
Q ss_pred --hhc---CCCCCHHHHHHHhcc
Q psy13354 606 --NYS---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 606 --~~~---~~~It~e~V~~~v~~ 623 (1342)
+|+ +..||.+++++++..
T Consensus 320 ~~a~~~~~~~~i~~~~~~~~l~~ 342 (445)
T PRK12422 320 RVAYKKLSHQLLYVDDIKALLHD 342 (445)
T ss_pred HHHHHHhhCCCCCHHHHHHHHHH
Confidence 554 356999999888853
No 409
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.39 E-value=1.7e-11 Score=135.44 Aligned_cols=119 Identities=26% Similarity=0.399 Sum_probs=104.7
Q ss_pred EEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC------------CCCChHHHhccEEEEEEcCCCHHHHHHHHHH
Q psy13354 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE------------PQKIPITVLSRCIQFNLKKMLHHDIVNNLCY 569 (1342)
Q Consensus 502 vviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~------------~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~ 569 (1342)
|+||||+|+|.-+.+..|.+.+|+.-..+ +|++||+ |+-++..+++|..++.-.|++.++++.++.-
T Consensus 294 VLFIDEvHmLDIE~FsFlnrAlEse~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRllII~t~py~~~EireIi~i 372 (450)
T COG1224 294 VLFIDEVHMLDIECFSFLNRALESELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRLLIISTRPYSREEIREIIRI 372 (450)
T ss_pred eEEEechhhhhHHHHHHHHHHhhcccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhheeEEecCCCCHHHHHHHHHH
Confidence 99999999999999999999999875554 7788874 5678889999999999999999999999999
Q ss_pred HHHhcCCCcchhHHHHHHHhc-CCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 570 ILNKENIKFETSALNLIATGA-QGSMRDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 570 ~~~~~g~~i~~~al~~La~~~-~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
+++.+++.++++|+++|+... ..++|-++++|.-+...+ .+.|..+||+++-
T Consensus 373 Ra~ee~i~l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~~rg~~~V~~~dVe~a~ 429 (450)
T COG1224 373 RAKEEDIELSDDALEYLTDIGEETSLRYAVQLLTPASIIAKRRGSKRVEVEDVERAK 429 (450)
T ss_pred hhhhhccccCHHHHHHHHhhchhhhHHHHHHhccHHHHHHHHhCCCeeehhHHHHHH
Confidence 999999999999999999974 679999999998655444 4569999998765
No 410
>PRK09087 hypothetical protein; Validated
Probab=99.38 E-value=4.5e-12 Score=139.84 Aligned_cols=198 Identities=10% Similarity=0.067 Sum_probs=137.6
Q ss_pred HHhhccCCC-Ccccccc---chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 380 VLARKYRPS-NFNTLIG---QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 380 ~l~~k~~p~-~f~~lvG---q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+|.-.+.|. +|++.+. ...++..+.+.. +...+.++|+||+|+|||++++++++....
T Consensus 9 ~l~~~~~~~~~~~~Fi~~~~N~~a~~~l~~~~--~~~~~~l~l~G~~GsGKThLl~~~~~~~~~---------------- 70 (226)
T PRK09087 9 PLNFSHDPAYGRDDLLVTESNRAAVSLVDHWP--NWPSPVVVLAGPVGSGKTHLASIWREKSDA---------------- 70 (226)
T ss_pred eeCCCCCCCCChhceeecCchHHHHHHHHhcc--cCCCCeEEEECCCCCCHHHHHHHHHHhcCC----------------
Confidence 333334433 7888763 344566555533 223456899999999999999999876531
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-CcEEEEE
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
.+ ++... -..+++..... .+|+|||++.+.. ...+|+.+++.-. ....+|+
T Consensus 71 -------------~~--i~~~~-----~~~~~~~~~~~-------~~l~iDDi~~~~~-~~~~lf~l~n~~~~~g~~ili 122 (226)
T PRK09087 71 -------------LL--IHPNE-----IGSDAANAAAE-------GPVLIEDIDAGGF-DETGLFHLINSVRQAGTSLLM 122 (226)
T ss_pred -------------EE--ecHHH-----cchHHHHhhhc-------CeEEEECCCCCCC-CHHHHHHHHHHHHhCCCeEEE
Confidence 12 21110 01112222211 3899999998742 2344555543221 1344666
Q ss_pred EeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++... ...+.++||+ .++++.+|+.+++..++++.++..++.++++++++|++.+.++++.+...++++..+
T Consensus 123 ts~~~p~~~~~~~~dL~SRl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~~~~l~~~l~~L~~~ 202 (226)
T PRK09087 123 TSRLWPSSWNVKLPDLKSRLKAATVVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMERSLFAAQTIVDRLDRL 202 (226)
T ss_pred ECCCChHHhccccccHHHHHhCCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 666443 2357899998 899999999999999999999999999999999999999999999999988887665
Q ss_pred c---CCCCCHHHHHHHhcc
Q psy13354 608 S---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 608 ~---~~~It~e~V~~~v~~ 623 (1342)
+ +.+||...+++++..
T Consensus 203 ~~~~~~~it~~~~~~~l~~ 221 (226)
T PRK09087 203 ALERKSRITRALAAEVLNE 221 (226)
T ss_pred HHHhCCCCCHHHHHHHHHh
Confidence 4 567999999998854
No 411
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.38 E-value=5.7e-11 Score=144.93 Aligned_cols=206 Identities=11% Similarity=0.191 Sum_probs=139.4
Q ss_pred CCccccc-cchh--hHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 388 SNFNTLI-GQNH--ISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 388 ~~f~~lv-Gq~~--~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
.+|++++ |... +...+...... +...+.++|||++|+|||++++++++.+......
T Consensus 285 ~TFDnFvvG~sN~~A~aaa~avae~~~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g-------------------- 344 (617)
T PRK14086 285 YTFDTFVIGASNRFAHAAAVAVAEAPAKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPG-------------------- 344 (617)
T ss_pred CCHhhhcCCCccHHHHHHHHHHHhCccccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCC--------------------
Confidence 4799975 4322 33344444443 3334568999999999999999999987521100
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhh------cCccCCceEEEeccCccCCH--HHHHHHHHhhcCCCC-cEEEEE
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIY------APINARYKIYVIDEVHMLTH--HAFNAMLKTLEEPPK-YIKFIL 534 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~------~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p~~-~~vlIl 534 (1342)
..+..++... -+.++...... ...+.+..+|+|||++++.. ...+.|+.+++.-.. ...+|+
T Consensus 345 ----~~V~Yitaee-----f~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~III 415 (617)
T PRK14086 345 ----TRVRYVSSEE-----FTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVL 415 (617)
T ss_pred ----CeEEEeeHHH-----HHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEE
Confidence 1122232211 01111111100 00123456999999998843 234555555543211 223566
Q ss_pred EeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++... .+.+.|.||+ .++++.+|+.+....+|+++++..++.++++++++|++...+|+|.+...|+++..+
T Consensus 416 TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~rL~a~ 495 (617)
T PRK14086 416 SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALIRVTAF 495 (617)
T ss_pred ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 777643 4567899997 789999999999999999999999999999999999999999999999999998877
Q ss_pred c---CCCCCHHHHHHHhc
Q psy13354 608 S---SEKITLNSMQEMLS 622 (1342)
Q Consensus 608 ~---~~~It~e~V~~~v~ 622 (1342)
+ +..||.+.+++++.
T Consensus 496 a~~~~~~itl~la~~vL~ 513 (617)
T PRK14086 496 ASLNRQPVDLGLTEIVLR 513 (617)
T ss_pred HHhhCCCCCHHHHHHHHH
Confidence 5 45699988887774
No 412
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=99.37 E-value=5.6e-11 Score=144.05 Aligned_cols=295 Identities=15% Similarity=0.091 Sum_probs=170.8
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc-------
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------- 110 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------- 110 (1342)
+-.|.+.+|+.+.+...... +.. + ..+. ..++.++++++.+.+ .+++++||++|+..+++...
T Consensus 55 h~~p~v~~A~~~~~~~~~~~---~~~-~-~~~~----~~~la~~l~~~~~~~-~v~~~~sGseA~e~Alk~ar~~~~~~~ 124 (406)
T PRK12381 55 HAHPALREALNEQASKFWHT---GNG-Y-TNEP----VLRLAKKLIDATFAD-RVFFCNSGAEANEAALKLARKYAHDRY 124 (406)
T ss_pred CCCHHHHHHHHHHHhhcccc---cCc-c-CCHH----HHHHHHHHHhhCCCC-eEEEcCCcHHHHHHHHHHHHHHHhhcC
Confidence 34567999988888532111 111 1 1222 233555888877665 44555599999999998752
Q ss_pred -CCCCEEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 111 -NPGDTIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 111 -~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
.+...|+.....+.++.... +...+.. ..+..++. .|++++++.+.+ +.+.+++. |.++
T Consensus 125 ~~~r~~ii~~~~~yHG~t~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-~~aaviiE-Pv~~~ 195 (406)
T PRK12381 125 GSHKSGIVAFKNAFHGRTLFT--VSAGGQPKYSQDFAPLPPDIRHAAY-----NDLNSASALIDD-QTCAVIVE-PIQGE 195 (406)
T ss_pred CCCCCeEEEECCCcCCcchhH--HhhcCCcccccCCCCCCCCeeEeCC-----CCHHHHHHhccC-CeeEEEEe-CCcCC
Confidence 13466776555444432211 1111110 01122222 278899988864 45666664 4444
Q ss_pred ------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEechhHHH
Q psy13354 179 ------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKI 248 (1342)
Q Consensus 179 ------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~ 248 (1342)
...++++|.++|++||+++|+||+|. |....+.... ... .+|+ .+++|++++. .-|++++++++++.
T Consensus 196 gg~~~~~~~~l~~l~~l~~~~~~llI~DEv~t-G~gr~G~~~~~~~~~v~pDi--~t~sK~l~gG~~ig~~~~~~~~~~~ 272 (406)
T PRK12381 196 GGVIPADKAFLQGLRELCDRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDV--LTTAKALGGGFPIGAMLTTEKCASV 272 (406)
T ss_pred CCCcCCCHHHHHHHHHHHHHcCCEEEEcchhh-CCCCCcchhhhHhhCCCCCE--EEehhhhhCCCceEEEEEcHHHHhh
Confidence 23479999999999999999999983 4322222211 111 2465 4778999421 22999999999888
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEee-CCCCCeEEEEEccCCC-
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVS-GGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~-~~~~~~~v~i~~~~~~- 324 (1342)
+.......++++ +|...+++.+.++.+. -.+..+++.++.+++.+.|++.+ +.+.. ....+.++++.+....
T Consensus 273 ~~~~~~~~t~~~--~pl~~aaa~a~l~~l~--~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~vrg~Gl~~~~~l~~~~~ 348 (406)
T PRK12381 273 MTVGTHGTTYGG--NPLASAVAGKVLELIN--TPEMLNGVKQRHDWFVERLNTINARYGLFSEIRGLGLLIGCVLNAEYA 348 (406)
T ss_pred cCCCCCCCCCCC--CHHHHHHHHHHHHHHh--hccHHHHHHHHHHHHHHHHHHHHhhCCCEEEEecCeEEEEEEecCchh
Confidence 865433333332 3444444445444443 22467888889999999888753 22111 1123456677665421
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.....+...+.++||.+.+. + ...+|++++..++
T Consensus 349 ~~~~~~~~~l~~~Gv~v~~~-------g---~~~lRl~p~~~~t 382 (406)
T PRK12381 349 GKAKQISQEAAKAGVMVLIA-------G---PNVVRFAPALNIS 382 (406)
T ss_pred hHHHHHHHHHHHCCcEEeeC-------C---CCEEEEeCCccCC
Confidence 12233444455569999743 1 2368998877555
No 413
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.36 E-value=2e-11 Score=147.75 Aligned_cols=205 Identities=15% Similarity=0.273 Sum_probs=138.4
Q ss_pred CCccc-cccchh--hHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 388 SNFNT-LIGQNH--ISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 388 ~~f~~-lvGq~~--~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
.+|++ ++|... +...+.+.... +...+.++|||++|+|||++++++++++....+.
T Consensus 107 ~tfd~fi~g~~n~~a~~~~~~~~~~~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~-------------------- 166 (405)
T TIGR00362 107 YTFDNFVVGKSNRLAHAAALAVAENPGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPN-------------------- 166 (405)
T ss_pred CcccccccCCcHHHHHHHHHHHHhCcCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCC--------------------
Confidence 36888 456433 34444444443 2334568999999999999999999998632110
Q ss_pred cCCCccEEEEccCCCcC--H-----HHHHHHHHHHhhcCccCCceEEEeccCccCCH--HHHHHHHHhhcCC-CCcEEEE
Q psy13354 464 NGCFMDYIEMDAASTRG--I-----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--HAFNAMLKTLEEP-PKYIKFI 533 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~--~-----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p-~~~~vlI 533 (1342)
..++.+++..... . ..+.+..+.. ....+++|||++.+.. ..++.|+.+++.. .....+|
T Consensus 167 ----~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~~------~~~dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~ii 236 (405)
T TIGR00362 167 ----AKVVYVSSEKFTNDFVNALRNNKMEEFKEKY------RSVDLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIV 236 (405)
T ss_pred ----CcEEEEEHHHHHHHHHHHHHcCCHHHHHHHH------HhCCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEE
Confidence 1122332211000 0 0111111111 1245999999998853 2345566555432 1123356
Q ss_pred EEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 534 LATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 534 l~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
++++... .+.+.+.||+ ..+++.+|+.+++..+++++++..++.++++++++|++.+.+|+|.+...|.++..
T Consensus 237 its~~~p~~l~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l~~l~~ 316 (405)
T TIGR00362 237 LTSDRPPKELPGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGALNRLLA 316 (405)
T ss_pred EecCCCHHHHhhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 6776533 3557889998 57999999999999999999999999999999999999999999999999999877
Q ss_pred hc---CCCCCHHHHHHHhc
Q psy13354 607 YS---SEKITLNSMQEMLS 622 (1342)
Q Consensus 607 ~~---~~~It~e~V~~~v~ 622 (1342)
++ +..||.+.+++++.
T Consensus 317 ~a~~~~~~it~~~~~~~L~ 335 (405)
T TIGR00362 317 YASLTGKPITLELAKEALK 335 (405)
T ss_pred HHHHhCCCCCHHHHHHHHH
Confidence 65 45699888887774
No 414
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=99.36 E-value=1.1e-10 Score=141.66 Aligned_cols=295 Identities=14% Similarity=0.115 Sum_probs=165.2
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL-------- 110 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~-------- 110 (1342)
..|.+.+++.+.+. .+. +.+. .+ ..+...+++ +.+++++|.+.+.+++ ||++|+..++..+.
T Consensus 54 ~~p~v~~a~~~~~~-~~~--~~~~-~~-~~~~~~~l~----~~l~~~~~~~~~~~~~-SGs~A~e~ai~~a~~~~~~~~~ 123 (401)
T TIGR01885 54 CHPKIVKALTEQAQ-KLT--LSSR-AF-YNDVFGEFA----EYVTKLFGYDKVLPMN-TGAEAVETAIKLARKWGYKVKG 123 (401)
T ss_pred CCHHHHHHHHHHHH-hcc--cccc-cc-CCHHHHHHH----HHHHhhcCCCEEEEeC-ccHHHHHHHHHHHHHHhhhhcC
Confidence 36779999888875 332 2211 11 233334444 4888888876555555 99999999999752
Q ss_pred -CCC-CEEEEeeccCCccchhhHHhhhCCc----------eeEEEEecCCCCCCCCHHHHHHHHHhcC--CeEEEEcCCC
Q psy13354 111 -NPG-DTIMGMSLQEGGHLTHGMMLNMSGK----------WFNSICYGLNKKEKIDYKKVEYLAKKNK--PKLIIAGASA 176 (1342)
Q Consensus 111 -~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~----------~~~~v~~~~~~~~~id~e~Le~~i~~~~--~~liv~~~s~ 176 (1342)
.+| +.|+.....|.+.... .+...+. ......++++ |++++++.+.+.. ...+++.+..
T Consensus 124 ~~~~~~~i~~~~~~yhg~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~avi~E~v~ 196 (401)
T TIGR01885 124 IPENQAIIVSAKGNFHGRTLG--AISMSTDPDSRTNFGPYVPGFKKIPYN-----NLEALEEALEDHGPNVCAFIVEPIQ 196 (401)
T ss_pred CCCCCCEEEEECCCcCcccHH--HHhCcCCcccccccCCCCCCceEeCCC-----CHHHHHHHHHhcCCCEEEEEEeCcc
Confidence 234 4555444333332111 1111110 0112323333 7899998886432 3345553322
Q ss_pred CC--ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC-CCcEEEecCCccCCCCC--eeEEEEechh
Q psy13354 177 YS--QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP-FADFITSTTHKSLRGPR--GGFILMKKKY 245 (1342)
Q Consensus 177 ~~--~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~-~~Divv~S~sK~l~gp~--GG~iv~~~~l 245 (1342)
.+ ... .+++|.++|++||+++|+||+|. |....+..... .. .+|+++ ++|.+++.. -|++++++++
T Consensus 197 ~~~G~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~g~~G~~~~~~~~~~~~di~~--~gK~l~~g~~~ig~v~~~~~i 273 (401)
T TIGR01885 197 GEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQT-GLGRTGKLLCVDHENVKPDIVL--LGKALSGGVYPVSAVLADDDV 273 (401)
T ss_pred CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCccchhhHHhhcCCCCCEEE--eeccccCCCCCcEEEEEcHHH
Confidence 11 122 39999999999999999999984 42212222111 11 257775 459994421 1789999998
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCCCCeEEEEEccCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGTKSHIILVDLRNKK 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~~~~~v~i~~~~~~ 324 (1342)
++.+........+++ + |...+++.+.++.+.+. .+.++..++.+++.+.|++.+..++. ....+.+..+.++...
T Consensus 274 ~~~~~~~~~~~t~~~-~-p~~~~aa~a~L~~i~~~--~l~~~~~~~~~~~~~~L~~l~~~~~~~~~g~g~~~~i~~~~~~ 349 (401)
T TIGR01885 274 MLTIKPGEHGSTYGG-N-PLACAVAVAALEVLEEE--KLAENAEKLGEIFRDQLKKLPKPIITEVRGRGLLNAIVIDESK 349 (401)
T ss_pred HhhccCCCCCCCCCC-C-HHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHhccCCceeEEeecCeeEEEEeccCc
Confidence 888765333333333 2 33344444444554321 34567788899999999987543322 1123444444444332
Q ss_pred ---CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 325 ---ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 325 ---~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...++...+. ++||.+.+.. ...+|++++..++
T Consensus 350 ~~~~~~~l~~~l~-~~Gv~v~~~~----------~~~lRi~p~l~~t 385 (401)
T TIGR01885 350 TGRTAWDLCLKLK-EKGLLAKPTH----------GNIIRLAPPLVIT 385 (401)
T ss_pred chhHHHHHHHHHH-hCCEEEEecC----------CCEEEEeCCccCC
Confidence 2345666665 5699997531 2469998875444
No 415
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.36 E-value=1.3e-11 Score=147.31 Aligned_cols=209 Identities=14% Similarity=0.152 Sum_probs=143.6
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCc
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGI 448 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~ 448 (1342)
...+..+.+|+++.|.+..++.+.+++.. -..+.++|||||||||||++|+++++.+..
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~--------- 243 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSA--------- 243 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCC---------
Confidence 35567778999999999999999888742 135668999999999999999999998763
Q ss_pred ccCCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH---------
Q psy13354 449 TSQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------- 513 (1342)
Q Consensus 449 ~~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------- 513 (1342)
.++.+..+. ..+...+++++..+.. ..+.||+|||+|.+..
T Consensus 244 --------------------~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~kR~~~~sgg 299 (438)
T PTZ00361 244 --------------------TFLRVVGSELIQKYLGDGPKLVRELFRVAEE----NAPSIVFIDEIDAIGTKRYDATSGG 299 (438)
T ss_pred --------------------CEEEEecchhhhhhcchHHHHHHHHHHHHHh----CCCcEEeHHHHHHHhccCCCCCCcc
Confidence 133332221 1122345566655443 3456999999987621
Q ss_pred --HHHH---HHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHH
Q psy13354 514 --HAFN---AMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSAL 583 (1342)
Q Consensus 514 --~~~~---~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al 583 (1342)
+... .|+..++. ....+.+|++||.++.+.+++.+ |+ ..++|++|+.++..++++.++.+..+.- +..+
T Consensus 300 ~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~~-dvdl 378 (438)
T PTZ00361 300 EKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLAE-DVDL 378 (438)
T ss_pred cHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCCc-CcCH
Confidence 1223 34444442 24578899999999999999875 66 7899999999999999998887665432 2235
Q ss_pred HHHHHhc-CCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 584 NLIATGA-QGSMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 584 ~~La~~~-~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.++..+ +.+..++.+.+..+...+ ...|+.+|+.+++..
T Consensus 379 ~~la~~t~g~sgAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~ 423 (438)
T PTZ00361 379 EEFIMAKDELSGADIKAICTEAGLLALRERRMKVTQADFRKAKEK 423 (438)
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHH
Confidence 5556554 345555666666554443 235999999887754
No 416
>PRK13578 ornithine decarboxylase; Provisional
Probab=99.36 E-value=1e-10 Score=145.73 Aligned_cols=227 Identities=20% Similarity=0.199 Sum_probs=151.3
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCC--CC-
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLN--KK- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~--~~- 150 (1342)
..++.+..++.||++++.+.++|+|.+|.+++++++.+||.|+ +..++|-|.... +-..|. .++++... +.
T Consensus 176 i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~~~~Gd~VL---vdRN~HKSv~hgaLiLsGa--~PVYl~P~~n~~G 250 (720)
T PRK13578 176 AKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNALLTPGDLVL---FDRNNHKSNHHGALIQAGA--TPVYLETARNPFG 250 (720)
T ss_pred HHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHhcCCCCEEE---eecccHHHHHHHHHHHcCC--eEEEeeccccccC
Confidence 3446669999999999999996777799999999999999999 555888887764 777787 55554332 21
Q ss_pred --CCCCH-----HHHHHHHHhc--------CC-eEEEEcCCCCC-cccCHHHHHHH-HHHcCCEEEEEcccchhhhhcCC
Q psy13354 151 --EKIDY-----KKVEYLAKKN--------KP-KLIIAGASAYS-QYIDFERFYHI-AKNINSYFMVDMAHYAGLIAAGE 212 (1342)
Q Consensus 151 --~~id~-----e~Le~~i~~~--------~~-~liv~~~s~~~-~~~~l~~I~~l-a~~~gi~LIvDea~~~g~~~~~~ 212 (1342)
+.+++ +.+++++.++ +| +++++..++|- ...++++|+++ |+.++ +|++||||+.-......
T Consensus 251 i~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTYdG~~ydi~~I~~~~~h~~~-~llvDEAhgah~~F~p~ 329 (720)
T PRK13578 251 FIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTYDGTIYNARQVVDKIGHLCD-YILFDSAWVGYEQFIPM 329 (720)
T ss_pred CcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCCcceeecHHHHHHHhhccCC-cEEEeCcchhhhccCcc
Confidence 33454 4488888765 22 55666566655 44599999999 68888 99999999754321111
Q ss_pred ----CCCCCC-CCc----EEEecCCccCCCCCe-eEEEEechhH---------HHHhhccCCccccCCcHHHHHHHHHHH
Q psy13354 213 ----YPNPVP-FAD----FITSTTHKSLRGPRG-GFILMKKKYK---------KIINSAVFPGIQGGPLMHVIAAKAVAF 273 (1342)
Q Consensus 213 ----~~~~l~-~~D----ivv~S~sK~l~gp~G-G~iv~~~~l~---------~~l~~~~~~~~~~~~~~~~~~Aaa~al 273 (1342)
+...++ .+| +++.|.||.+++.+. +++-.+...+ +.++....-+.+++|+.+.++++-.+.
T Consensus 330 ~~~~p~~al~~GaD~p~i~v~QStHKtL~alTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~qSTSPsY~LmASLDva~ 409 (720)
T PRK13578 330 MADCSPLLLELNENDPGIFVTQSVHKQQAGFSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLHASTSPFYPLFAALDVNA 409 (720)
T ss_pred cccCChhhhhcCCCCCCeEEEEChhhcchhhhhHhhhhcCCcccccccccCCHHHHHHHHHHHcCCChHHHHHHHHHHHH
Confidence 111122 367 999999999987776 6665544321 345443333444566666666665554
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHH-Hh-CCcEEe
Q psy13354 274 KEVLKPDFKIYQKQVVKNAKILSKIL-DQ-RGIRIV 307 (1342)
Q Consensus 274 ~~~l~~~~~~~~~~l~~~a~~l~~~L-~~-~g~~~~ 307 (1342)
..+.....+...++..+.+..+++.+ .. .++.+.
T Consensus 410 ~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~ 445 (720)
T PRK13578 410 KMHEGESGRRLWMECVKLGIEARKLILARCKLIRPF 445 (720)
T ss_pred HHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeec
Confidence 44432244566777778888888877 33 345543
No 417
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=99.36 E-value=8.2e-12 Score=152.13 Aligned_cols=218 Identities=19% Similarity=0.244 Sum_probs=142.4
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcC----CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKK----RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~----~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..|++||+|++.+||+.|+.-++.++.+++.. .....+||+||+|||||++++.+|++++.....+.++.....
T Consensus 7 ~~W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~-- 84 (519)
T PF03215_consen 7 EPWVEKYAPKTLDELAVHKKKVEEVRSWLEEMFSGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRE-- 84 (519)
T ss_pred CccchhcCCCCHHHhhccHHHHHHHHHHHHHHhccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccc--
Confidence 47999999999999999998888888888643 224578999999999999999999999865444332211000
Q ss_pred CCcchhhhccCCCccEEEEcc--CC-CcCHHHHHHH-HHHHhhcCc-------cCCceEEEeccCccCC----HHHHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDA--AS-TRGINEMAQL-LEQTIYAPI-------NARYKIYVIDEVHMLT----HHAFNAM 519 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~--~~-~~~~~~i~~i-i~~~~~~p~-------~~~~rvviIDE~~~L~----~~~~~~L 519 (1342)
......++..... .. ....+.+.+. +....+... ..+++||+|||..... ..-.+.|
T Consensus 85 --------~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~~~f~~~L 156 (519)
T PF03215_consen 85 --------SDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDTSRFREAL 156 (519)
T ss_pred --------cccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhHHHHHHHH
Confidence 0000011110000 00 0011223333 222222111 2468899999977542 2235667
Q ss_pred HHhhcCCCC-cEEEEEEeCC-------CC--------CChHHHhcc--EEEEEEcCCCHHHHHHHHHHHHHhc-----CC
Q psy13354 520 LKTLEEPPK-YIKFILATTE-------PQ--------KIPITVLSR--CIQFNLKKMLHHDIVNNLCYILNKE-----NI 576 (1342)
Q Consensus 520 l~~Le~p~~-~~vlIl~t~~-------~~--------kl~~~L~sR--~~~i~~~~l~~~el~~~l~~~~~~~-----g~ 576 (1342)
.+++..... .++||++-.+ .. -+.+.++.. +..+.|.|+...-+.+.|.+++..+ +.
T Consensus 157 ~~~l~~~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~~ 236 (519)
T PF03215_consen 157 RQYLRSSRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSSSGK 236 (519)
T ss_pred HHHHHcCCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhhcCC
Confidence 778876655 7777776111 00 234566654 4899999999999999999999987 33
Q ss_pred -Ccc--hhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 577 -KFE--TSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 577 -~i~--~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
..+ .+.++.|++.+.||+|.|++.|+-.+.
T Consensus 237 ~~~p~~~~~l~~I~~~s~GDIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 237 NKVPDKQSVLDSIAESSNGDIRSAINNLQFWCL 269 (519)
T ss_pred ccCCChHHHHHHHHHhcCchHHHHHHHHHHHhc
Confidence 233 345999999999999999999987665
No 418
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.36 E-value=1.8e-11 Score=145.52 Aligned_cols=205 Identities=16% Similarity=0.189 Sum_probs=144.4
Q ss_pred cCCCCccccccchhhHHHHHHHHHc-----------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDK-----------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~-----------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
-...+|+++.|.+.+++.+.+++.. | ..+.++|||||||||||++|+++++.+..
T Consensus 139 ~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~------------- 205 (398)
T PTZ00454 139 KPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTA------------- 205 (398)
T ss_pred CCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC-------------
Confidence 4455899999999999999887741 1 35678999999999999999999998763
Q ss_pred CCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------HH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------HA 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~~ 515 (1342)
.++.+.++. ..+...+++++..+.. ..+.||+|||+|.+.. +.
T Consensus 206 ----------------~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~~----~~P~ILfIDEID~i~~~r~~~~~~~d~~~ 265 (398)
T PTZ00454 206 ----------------TFIRVVGSEFVQKYLGEGPRMVRDVFRLARE----NAPSIIFIDEVDSIATKRFDAQTGADREV 265 (398)
T ss_pred ----------------CEEEEehHHHHHHhcchhHHHHHHHHHHHHh----cCCeEEEEECHhhhccccccccCCccHHH
Confidence 122222210 1122345666655433 3456999999997621 12
Q ss_pred ---HHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 516 ---FNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 516 ---~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
...|+..++. ....+++|++||.++.+++++.+ |+ ..++|+.|+.++...+++.++.+.++. .+-.+..++
T Consensus 266 ~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la 344 (398)
T PTZ00454 266 QRILLELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFV 344 (398)
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHH
Confidence 2344555553 33578899999999999999886 66 679999999999999999888776654 233466777
Q ss_pred HhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 588 TGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.+.| +..++.+++..+...+ ...|+.+|+.+++..
T Consensus 345 ~~t~g~sgaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~ 385 (398)
T PTZ00454 345 SRPEKISAADIAAICQEAGMQAVRKNRYVILPKDFEKGYKT 385 (398)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 77644 7777888887766544 234888888877643
No 419
>PRK12462 phosphoserine aminotransferase; Provisional
Probab=99.36 E-value=1.3e-10 Score=135.72 Aligned_cols=314 Identities=11% Similarity=0.094 Sum_probs=200.5
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~ 104 (1342)
+.+.+.+|+..+|++|++++.+.+.+....|.+--......+...++.+.+.+.++++++.+ +++++++|||.++.+
T Consensus 4 ~~~nF~aGPa~lp~~Vl~~~~~~~~~~~~~g~si~eisHRs~~F~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea 83 (364)
T PRK12462 4 NQLNFSGGPGALPDTVLEQVRQAVVELPETGLSVLGMSHRSSWFSSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSM 83 (364)
T ss_pred ccceecCCCcCCCHHHHHHHHHHHhcccccCccccccccccHHHHHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHH
Confidence 46789999999999999999988865433233222223345666778888999999999984 466778789999999
Q ss_pred HHHHccCCCCEEE-EeeccCCccchhh--HHhhhCCceeEEEEecC--CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 105 VFFSVLNPGDTIM-GMSLQEGGHLTHG--MMLNMSGKWFNSICYGL--NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 105 al~al~~pGD~Vl-v~~~~~~~~~s~~--~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+...++.+||+++ +.. .+.++.. ......| .++.+.... +....++++.++ +.+ ..+.+.++.+..+
T Consensus 84 ~~~Nll~~g~~~~~~~~---tG~fg~r~~~ea~~~g-~v~~~~~~~~~~~~~~p~~~~~~--~~~-d~~~v~~t~NETst 156 (364)
T PRK12462 84 IPMNFSRPGAAAPEYVT---TGYWSRKAIGEASRVA-AMRVVWDGAASGYRTLPSLAELD--WDA-RAPFRHYVSNETVE 156 (364)
T ss_pred HHHHcCCCCCcEEEEEe---CCHHHHHHHHHHHhcC-CceEecCcCCCCCCcCCCHHHhc--cCC-CCcEEEEccCCCCc
Confidence 9999999999654 322 3444432 2334445 334442111 112334565542 112 2455555443333
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--- 253 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--- 253 (1342)
...+ ++.+.+++++|+|.+..++.. +-..+..|++..+.+|++ ||+| ++++.+++.++......
T Consensus 157 Gv~~~-----~~~~~~~~llvvD~sS~~~s~-----pid~~~~dvi~agsQKnl-gP~Gltvvivs~~al~~~~~~~p~~ 225 (364)
T PRK12462 157 GLQFP-----DAAGLPDSPLIADMSSDFMSR-----PFDVEAYGMVYAHAQKNL-GPAGVTVAIIRRALLERVPDTLPPM 225 (364)
T ss_pred eEecC-----cccccCCCeEEEEcCchhhCC-----CCChHHccEEEeeccccC-CCCceEEEEECHHHHhhccccCCch
Confidence 2222 333346899999999876544 111223599999999999 6999 98889887765543321
Q ss_pred --------CCccccCCcHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHhCC-cEEee--CCCCC-eEEEEE
Q psy13354 254 --------FPGIQGGPLMHVIAAKAVAFKEVLKP--DFKIYQKQVVKNAKILSKILDQRG-IRIVS--GGTKS-HIILVD 319 (1342)
Q Consensus 254 --------~~~~~~~~~~~~~~Aaa~al~~~l~~--~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~--~~~~~-~~v~i~ 319 (1342)
....++||+.....++..++..+.++ +++.+.++..+.++.+++.+.+.. +-... +...+ .-+.+.
T Consensus 226 ldy~~~~~~~s~~nTPpv~~iy~l~~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~ 305 (364)
T PRK12462 226 LDFRTHVEHRSNYNTPPVFAIYVMALVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFR 305 (364)
T ss_pred hhHHHHHhcCCCCCCchHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEE
Confidence 12234677788888888888887776 899999999999999999999864 43322 11112 234556
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+..++.++...+. ++|+....+ +.. -+++|.|+=...+
T Consensus 306 ~~~~~l~~~f~~~a~-~~gl~~lkG----hr~----vgg~Ras~yna~~ 345 (364)
T PRK12462 306 FRQPRLDTLFKEQST-EAGFCGLSG----HRS----IGGIRASLYNAVS 345 (364)
T ss_pred cCCHHHHHHHHHHHH-HCCCccccC----Ccc----cCceEEEcCCCCC
Confidence 666555555655555 458876532 211 2569988766444
No 420
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=3.5e-11 Score=141.26 Aligned_cols=248 Identities=15% Similarity=0.198 Sum_probs=157.9
Q ss_pred hccCCCCccccccchhhHHHHHHHHH---cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALD---KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~---~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.-|.|.. +++.+..++.+...+. .|..|+.+++||++|||||.+++.+.+++....... ...+.+|..-.+-
T Consensus 12 ~~~iP~~---l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~--~~~yINc~~~~t~ 86 (366)
T COG1474 12 EDYIPEE---LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEESSANV--EVVYINCLELRTP 86 (366)
T ss_pred CCCCccc---ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccC--ceEEEeeeeCCCH
Confidence 4466654 7887777766655543 455555689999999999999999999998542221 1344455443333
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhh---cCCCCcEEEEEEe
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTL---EEPPKYIKFILAT 536 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~L---e~p~~~~vlIl~t 536 (1342)
..+.......+..+........+....+.+.... ....-||++||++.|.+...+.|..++ +.....+.+|+.+
T Consensus 87 ~~i~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~---~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 87 YQVLSKILNKLGKVPLTGDSSLEILKRLYDNLSK---KGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred HHHHHHHHHHcCCCCCCCCchHHHHHHHHHHHHh---cCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEe
Confidence 3322211111110000000111122222222221 344558889999988654334454444 4444456677777
Q ss_pred CCCC---CChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHh--cCCCcchhHHHHHHHh---cCCcHHHHHHHHHHHHh
Q psy13354 537 TEPQ---KIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNK--ENIKFETSALNLIATG---AQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 537 ~~~~---kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~--~g~~i~~~al~~La~~---~~g~lr~a~~~L~kl~~ 606 (1342)
|..+ .+.+.++|+. ..+.|+|++.+|+..+|..+++. ..-.++++++++++.. .+||.|.++..|..+..
T Consensus 164 n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidilr~A~e 243 (366)
T COG1474 164 NDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDILRRAGE 243 (366)
T ss_pred ccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHHHHHHH
Confidence 7764 5667888887 56889999999999999999985 3456899999888854 57899999999999887
Q ss_pred hcC----CCCCHHHHHHHhccCcHHHHHHHHHHHHc
Q psy13354 607 YSS----EKITLNSMQEMLSIIDQKYLIQILDALAE 638 (1342)
Q Consensus 607 ~~~----~~It~e~V~~~v~~~~~~~if~l~dal~~ 638 (1342)
.+. ..++.++|.++..........+.++.+..
T Consensus 244 iAe~~~~~~v~~~~v~~a~~~~~~~~~~~~~~~L~~ 279 (366)
T COG1474 244 IAEREGSRKVSEDHVREAQEEIERDVLEEVLKTLPL 279 (366)
T ss_pred HHHhhCCCCcCHHHHHHHHHHhhHHHHHHHHHcCCH
Confidence 764 45999999998655555555455444433
No 421
>CHL00176 ftsH cell division protein; Validated
Probab=99.35 E-value=2e-11 Score=152.46 Aligned_cols=203 Identities=18% Similarity=0.257 Sum_probs=145.7
Q ss_pred CCCccccccchhhHHHHHHHH---Hc--------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINAL---DK--------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l---~~--------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
..+|++++|.+.+++.+.+.+ +. ...+..+||+||||||||++|+++|.++..+
T Consensus 179 ~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p--------------- 243 (638)
T CHL00176 179 GITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVP--------------- 243 (638)
T ss_pred CCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCC---------------
Confidence 458999999999887776665 22 2446789999999999999999999987531
Q ss_pred CcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------HH
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------HA 515 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~~ 515 (1342)
++.++++. ..+...+++++..+.. ..+.||+|||+|.+.. ..
T Consensus 244 --------------~i~is~s~f~~~~~g~~~~~vr~lF~~A~~----~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~ 305 (638)
T CHL00176 244 --------------FFSISGSEFVEMFVGVGAARVRDLFKKAKE----NSPCIVFIDEIDAVGRQRGAGIGGGNDEREQT 305 (638)
T ss_pred --------------eeeccHHHHHHHhhhhhHHHHHHHHHHHhc----CCCcEEEEecchhhhhcccCCCCCCcHHHHHH
Confidence 22221111 1122456666666543 2345999999998731 13
Q ss_pred HHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhcc--E-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc
Q psy13354 516 FNAMLKTLEE--PPKYIKFILATTEPQKIPITVLSR--C-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA 590 (1342)
Q Consensus 516 ~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~sR--~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~ 590 (1342)
.+.|+..++. ....+++|.+||.++.+.+++.+. + ..+.+..|+.++...+++.++++... .++..+..+++.+
T Consensus 306 L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~-~~d~~l~~lA~~t 384 (638)
T CHL00176 306 LNQLLTEMDGFKGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKL-SPDVSLELIARRT 384 (638)
T ss_pred HHHHHhhhccccCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhccc-chhHHHHHHHhcC
Confidence 4555655553 235678899999999999999864 4 78999999999999999999887443 3566788999988
Q ss_pred CC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 591 QG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 591 ~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
.| +.+++.++++.++..+ ...||.+++++++.+
T Consensus 385 ~G~sgaDL~~lvneAal~a~r~~~~~It~~dl~~Ai~r 422 (638)
T CHL00176 385 PGFSGADLANLLNEAAILTARRKKATITMKEIDTAIDR 422 (638)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Confidence 76 7778888877765443 234899998888744
No 422
>PF06144 DNA_pol3_delta: DNA polymerase III, delta subunit; InterPro: IPR010372 DNA polymerase III, delta subunit (2.7.7.7 from EC) is required for, along with delta' subunit, the assembly of the processivity factor beta(2) onto primed DNA in the DNA polymerase III holoenzyme-catalysed reaction []. The delta subunit is also known as HolA.; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication, 0009360 DNA polymerase III complex; PDB: 3GLG_F 1XXH_A 1JQL_B 3GLF_F 1JQJ_C 3GLI_F.
Probab=99.35 E-value=6e-12 Score=133.73 Aligned_cols=164 Identities=15% Similarity=0.183 Sum_probs=123.2
Q ss_pred EEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP 495 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p 495 (1342)
|||||++-..+...++.+.+.+.... ....++..++... ....++++.+.+.|
T Consensus 1 Yll~G~d~~l~~~~~~~i~~~~~~~~-----------------------~~~~~~~~~~~~~----~~~~~l~~~~~s~s 53 (172)
T PF06144_consen 1 YLLYGEDSFLIEEYIKKIRKALIKKD-----------------------FDDFNVIVFDGSE----DDIDELLEELQSPS 53 (172)
T ss_dssp EEEEES-HHHHHHHHHHHHHHHHTTT-----------------------EEEEEEEE-STTS-----HHH-HTTTSTTTT
T ss_pred CEEEeCcHHHHHHHHHHHHHHhhcCC-----------------------CccceEEEEcccc----CcHHHHHHHHhcCC
Confidence 89999999999999999999865221 0112344444433 34555889999999
Q ss_pred ccCCceEEEeccC----ccCCHHHHHHHHHhhcCCCCcEEEEEEeC-CCC---CChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 496 INARYKIYVIDEV----HMLTHHAFNAMLKTLEEPPKYIKFILATT-EPQ---KIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 496 ~~~~~rvviIDE~----~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~-~~~---kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
+|+++|+|+|+++ +....+..+.|.+++++|++++++|+.++ ..+ ++.+.+.+.+.+++|.+++..++..|+
T Consensus 54 lF~~~klvii~~~~~l~~~~~~~~~~~l~~~l~~~~~~~~lii~~~~~~~~~~k~~k~l~~~~~~~~~~~~~~~~~~~~i 133 (172)
T PF06144_consen 54 LFGDKKLVIIKNAPFLKDKLKKKEIKALIEYLSNPPPDCILIIFSEEKLDKRKKLYKALKKQAIVIECKKPKEQELPRWI 133 (172)
T ss_dssp SSSSEEEEEEE-----TT-S-TTHHHHHHHHTTT--SSEEEEEEES-S--HHHHHHHHHTTTEEEEEE----TTTHHHHH
T ss_pred ccCCCeEEEEecCccccccccHHHHHHHHHHHhCCCCCEEEEEEeCCchhhhhhHHHHHhcccceEEecCCCHHHHHHHH
Confidence 9999999999999 44566778999999999999999999888 444 456788899999999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 568 CYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 568 ~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
++++++.|+.++++++++|++.+++|++.+.++|+|+.+
T Consensus 134 ~~~~~~~g~~i~~~a~~~L~~~~~~d~~~l~~EleKL~L 172 (172)
T PF06144_consen 134 KERAKKNGLKIDPDAAQYLIERVGNDLSLLQNELEKLSL 172 (172)
T ss_dssp HHHHHHTT-EE-HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCCHHHHHHHHHHhChHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999863
No 423
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.35 E-value=2.7e-11 Score=136.78 Aligned_cols=102 Identities=31% Similarity=0.456 Sum_probs=80.8
Q ss_pred EEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC------------CCCChHHHhccEEEEEEcCCCHHHHHHHHHH
Q psy13354 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE------------PQKIPITVLSRCIQFNLKKMLHHDIVNNLCY 569 (1342)
Q Consensus 502 vviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~------------~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~ 569 (1342)
|++|||+|+|.-+.+..|.+.+|.+-.++ +|++||+ ++-++..+++|+.++...|++.+|+.+++.-
T Consensus 281 VLFIDEvHmLDiEcFsfLnralEs~~sPi-iIlATNRg~~~irGt~~~sphGiP~DlLDRllII~t~py~~~ei~~Il~i 359 (398)
T PF06068_consen 281 VLFIDEVHMLDIECFSFLNRALESELSPI-IILATNRGITKIRGTDIISPHGIPLDLLDRLLIIRTKPYSEEEIKQILKI 359 (398)
T ss_dssp EEEEESGGGSBHHHHHHHHHHHTSTT--E-EEEEES-SEEE-BTTS-EEETT--HHHHTTEEEEEE----HHHHHHHHHH
T ss_pred eEEecchhhccHHHHHHHHHHhcCCCCcE-EEEecCceeeeccCccCcCCCCCCcchHhhcEEEECCCCCHHHHHHHHHh
Confidence 99999999999999999999999875554 7888874 4567789999999999999999999999999
Q ss_pred HHHhcCCCcchhHHHHHHHhc-CCcHHHHHHHHHHH
Q psy13354 570 ILNKENIKFETSALNLIATGA-QGSMRDALSLTDQA 604 (1342)
Q Consensus 570 ~~~~~g~~i~~~al~~La~~~-~g~lr~a~~~L~kl 604 (1342)
+++.+++.++++++++|++.. ..++|-++++|.-+
T Consensus 360 R~~~E~v~i~~~al~~L~~ig~~~SLRYAiqLi~~a 395 (398)
T PF06068_consen 360 RAKEEDVEISEDALDLLTKIGVETSLRYAIQLITPA 395 (398)
T ss_dssp HHHHCT--B-HHHHHHHHHHHHHS-HHHHHHCHHHH
T ss_pred hhhhhcCcCCHHHHHHHHHHhhhccHHHHHHhhhhh
Confidence 999999999999999999864 78999999988654
No 424
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.34 E-value=1.8e-11 Score=148.32 Aligned_cols=207 Identities=14% Similarity=0.197 Sum_probs=139.3
Q ss_pred CCccccc-cc--hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 388 SNFNTLI-GQ--NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 388 ~~f~~lv-Gq--~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
.+|++.+ |. ..+.....+...+....+.++||||+|+|||++++++++.+....+.
T Consensus 102 ~tFdnFv~g~~n~~a~~~~~~~~~~~~~~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~--------------------- 160 (440)
T PRK14088 102 YTFENFVVGPGNSFAYHAALEVAKNPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD--------------------- 160 (440)
T ss_pred CcccccccCCchHHHHHHHHHHHhCcCCCCeEEEEcCCCCcHHHHHHHHHHHHHHhCCC---------------------
Confidence 4788865 63 33444455545433224569999999999999999999998632111
Q ss_pred CCCccEEEEccCCCcCHHHHHHHHHHHhhcC-------ccCCceEEEeccCccCCH--HHHHHHHHhhcCCC-CcEEEEE
Q psy13354 465 GCFMDYIEMDAASTRGINEMAQLLEQTIYAP-------INARYKIYVIDEVHMLTH--HAFNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p-------~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p~-~~~vlIl 534 (1342)
..+..+++.. -+.++........ +.....+++|||++.+.. ..++.|+.+++.-. ....+|+
T Consensus 161 ---~~v~yi~~~~-----f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIi 232 (440)
T PRK14088 161 ---LRVMYITSEK-----FLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVI 232 (440)
T ss_pred ---CeEEEEEHHH-----HHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEE
Confidence 1122232211 1111111111000 012356999999997742 23445555543211 1224566
Q ss_pred EeCCCC----CChHHHhccEE---EEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEPQ----KIPITVLSRCI---QFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~~----kl~~~L~sR~~---~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++... .+.+.+.||+. ++++.+|+.+++..++++.++..++.++++++++|++.+.||+|.+...|.++..+
T Consensus 233 tsd~~p~~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~~l~~~ 312 (440)
T PRK14088 233 CSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVY 312 (440)
T ss_pred ECCCCHHHHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHHHHHHH
Confidence 665433 34568899984 89999999999999999999999999999999999999999999999999998776
Q ss_pred c---CCCCCHHHHHHHhcc
Q psy13354 608 S---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 608 ~---~~~It~e~V~~~v~~ 623 (1342)
+ +..||.+.+++++..
T Consensus 313 ~~~~~~~it~~~a~~~L~~ 331 (440)
T PRK14088 313 KETTGEEVDLKEAILLLKD 331 (440)
T ss_pred HHHhCCCCCHHHHHHHHHH
Confidence 5 456999998888853
No 425
>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria [].; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.
Probab=99.34 E-value=8.9e-11 Score=131.24 Aligned_cols=270 Identities=21% Similarity=0.290 Sum_probs=144.9
Q ss_pred HHHHHhHH-HHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecC--CHHHHHHHHHHHccCCCCEEEE
Q psy13354 43 VMEAQGTL-LTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTIMG 118 (1342)
Q Consensus 43 v~eal~~~-l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~--sGs~A~~~al~al~~pGD~Vlv 118 (1342)
|++|+.+. +... .+.++..|+. ..+.+.|++ .+++.+|++++++.+. |||+|+..++.++++|||+++.
T Consensus 29 VL~Af~~~~vs~~---hf~~tTGYGY~D~GRd~le~----iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~LrpGD~ll~ 101 (403)
T PF06838_consen 29 VLKAFQENRVSDS---HFAGTTGYGYDDIGRDKLER----IYADVFGAEDALVRPQFVSGTHAIALALFGVLRPGDELLS 101 (403)
T ss_dssp HHHHHHHTT--GG---GCS---TT-TT-HHHHHHHH----HHHHHCT-SEEEEETTS-SHHHHHHHHHHHH--TT-EEEE
T ss_pred HHHHHHHcCCChh---hcCCCCcCCCCCccHHHHHH----HHHHHhCchhhhhcccccchHHHHHHHHHhcCCCCCeEEE
Confidence 66665553 3222 2333334444 334455555 9999999998888432 9999999999999999999996
Q ss_pred e-eccCCccchhhHH----------hhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEE-cCCCCC-----ccc
Q psy13354 119 M-SLQEGGHLTHGMM----------LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIA-GASAYS-----QYI 181 (1342)
Q Consensus 119 ~-~~~~~~~~s~~~~----------~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~-~~s~~~-----~~~ 181 (1342)
. ..+| -+.... +.-.|+ .+..+++.+++.+|++.+++.+++ +++++.+ -...|+ ...
T Consensus 102 ~tG~PY---DTL~~VIG~~g~~~GSL~e~Gi--~Y~~v~L~~dg~~D~~~i~~~~~~-~tk~v~IQRSrGYs~R~sl~i~ 175 (403)
T PF06838_consen 102 ITGKPY---DTLEEVIGIRGNGPGSLKEFGI--KYREVPLTEDGTIDWEAIKKALKP-NTKMVLIQRSRGYSWRPSLTIE 175 (403)
T ss_dssp SSSS-----CCHHHHHTSSSSSSSSTGGGT---EEEE--B-TTSSB-HHHHHHHHHT-TEEEEEEE-S-TTSSS----HH
T ss_pred cCCCch---hhHHHHhCCCCCCCCChHHhCc--eeEEEeecCCCCcCHHHHHHhhcc-CceEEEEecCCCCCCCCCCCHH
Confidence 2 2111 111112 223344 555557778899999999999996 4555555 334455 223
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCC---CCeeEEEEechhHHHHhhcc-C
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRG---PRGGFILMKKKYKKIINSAV-F 254 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~g---p~GG~iv~~~~l~~~l~~~~-~ 254 (1342)
+++++++++++. +++++||.+|+-..- . ..|.+ .+|++++|+-|..+| |.||||++++++++..-... .
T Consensus 176 ~I~~~i~~vk~~~p~~iifVDNCYGEFvE--~--~EP~~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a~RLTa 251 (403)
T PF06838_consen 176 EIKEIIKFVKEINPDVIIFVDNCYGEFVE--T--QEPTEVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAAYRLTA 251 (403)
T ss_dssp HHHHHHHHHHHH-TTSEEEEE-TTTTTTS--S--S-GGGGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHHHHHS-
T ss_pred HHHHHHHHHHhhCCCeEEEEeCCcceecc--c--cCccccchhheeccceeCCCCCccCcCCEEechHHHHHHHHhhhcC
Confidence 556666666665 799999999864322 1 11222 389999999999854 68899999999988865422 2
Q ss_pred Ccc---ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC---CeEEEEEccCCCCCHH
Q psy13354 255 PGI---QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK---SHIILVDLRNKKITGK 328 (1342)
Q Consensus 255 ~~~---~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~---~~~v~i~~~~~~~~~~ 328 (1342)
|+. .|.+.. ..-.+...+ .+. ..++..-.+-+......++++|+++.+.+.. .-+-.+.+..+..-..
T Consensus 252 PGiG~e~G~t~~-~~R~~~QGl--FlA---P~vV~eAlKgaif~A~~fe~lG~~v~P~~~~~R~DiIQai~l~~~e~l~~ 325 (403)
T PF06838_consen 252 PGIGKEVGATLG-TNRLMFQGL--FLA---PHVVGEALKGAIFAAALFEKLGFEVSPKPDDPRSDIIQAIELGSPEKLIA 325 (403)
T ss_dssp TTTGGGSS--TT-THHHHHHHH--HHH---HHHHHHHHHHHHHHHHHHHHTT-EEES-TTS--SSS-EEEE-SSHHHHHH
T ss_pred CccccccccCcc-hHHHHHhHH--hhc---hHHHHHHHHHHHHHHHHHHHcCCcCCCCCCCCCCceEEEEECCCHHHHHH
Confidence 221 111110 011111111 111 1234555666777778888899998763221 2355666654332224
Q ss_pred HHHHHHH
Q psy13354 329 IAESILE 335 (1342)
Q Consensus 329 ~~~~ll~ 335 (1342)
+++...+
T Consensus 326 FC~~iQ~ 332 (403)
T PF06838_consen 326 FCQGIQA 332 (403)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 4444443
No 426
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.34 E-value=2.9e-11 Score=144.59 Aligned_cols=204 Identities=18% Similarity=0.239 Sum_probs=142.1
Q ss_pred CCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+++.|.+..++.+.+.+.. ...+..+|||||||||||++|+++++.++.
T Consensus 126 p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~-------------- 191 (389)
T PRK03992 126 PNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNA-------------- 191 (389)
T ss_pred CCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCC--------------
Confidence 345789999999999999887732 145678999999999999999999998863
Q ss_pred CCCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHAF 516 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~~ 516 (1342)
.++.++++.. .....++++++.+.. ..+.+|+|||+|.+. .+..
T Consensus 192 ---------------~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~ 252 (389)
T PRK03992 192 ---------------TFIRVVGSELVQKFIGEGARLVRELFELARE----KAPSIIFIDEIDAIAAKRTDSGTSGDREVQ 252 (389)
T ss_pred ---------------CEEEeehHHHhHhhccchHHHHHHHHHHHHh----cCCeEEEEechhhhhcccccCCCCccHHHH
Confidence 2333333211 122345555555543 234599999999872 2233
Q ss_pred HHHHHhh---cC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 517 NAMLKTL---EE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 517 ~~Ll~~L---e~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
..|..++ +. ....+++|++||.++.+.+++.+ |+ ..++|++|+.++..++++.+++...+. .+..+..+++
T Consensus 253 ~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~ 331 (389)
T PRK03992 253 RTLMQLLAEMDGFDPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAE 331 (389)
T ss_pred HHHHHHHHhccccCCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHH
Confidence 3444444 32 23478899999999999999885 66 689999999999999999887765543 1234677788
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
.+.| +.+++..++..+...+ ...|+.+|+.+++..
T Consensus 332 ~t~g~sgadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~ 371 (389)
T PRK03992 332 LTEGASGADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEK 371 (389)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 7755 5566666666655543 234888888877744
No 427
>KOG0734|consensus
Probab=99.33 E-value=1.7e-11 Score=140.86 Aligned_cols=200 Identities=20% Similarity=0.255 Sum_probs=149.1
Q ss_pred cCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
....+|+|+-|-++++++|.+.+. .|++|..+||+||||||||.+||++|-+.+-
T Consensus 298 ~~nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~V-------------- 363 (752)
T KOG0734|consen 298 MKNVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGV-------------- 363 (752)
T ss_pred hcccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCC--------------
Confidence 445689999999999998888873 5799999999999999999999999987752
Q ss_pred CCCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------HHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------HAF 516 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~~~ 516 (1342)
.|+...++.. .|...+++++.++.... +-||+|||+|.... ...
T Consensus 364 ---------------PFF~~sGSEFdEm~VGvGArRVRdLF~aAk~~A----PcIIFIDEiDavG~kR~~~~~~y~kqTl 424 (752)
T KOG0734|consen 364 ---------------PFFYASGSEFDEMFVGVGARRVRDLFAAAKARA----PCIIFIDEIDAVGGKRNPSDQHYAKQTL 424 (752)
T ss_pred ---------------CeEeccccchhhhhhcccHHHHHHHHHHHHhcC----CeEEEEechhhhcccCCccHHHHHHHHH
Confidence 2333333322 24467899998886543 34999999998842 235
Q ss_pred HHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHhc
Q psy13354 517 NAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFE-TSALNLIATGA 590 (1342)
Q Consensus 517 ~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~-~~al~~La~~~ 590 (1342)
|.||--++. +.+.+++|.+||.++.++++|.+ |+ ..+..+.|+-....++|+.++++-- ++ +-....||+-+
T Consensus 425 NQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~--~~~~VD~~iiARGT 502 (752)
T KOG0734|consen 425 NQLLVEMDGFKQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIP--LDEDVDPKIIARGT 502 (752)
T ss_pred HHHHHHhcCcCcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcccHHHHHHHHHhcCC--cccCCCHhHhccCC
Confidence 666666663 45678899999999999999985 55 6788899999999999998887632 23 22355677766
Q ss_pred CC-cHHHHHHHHHHHHhhcC----CCCCHHHHHH
Q psy13354 591 QG-SMRDALSLTDQAINYSS----EKITLNSMQE 619 (1342)
Q Consensus 591 ~g-~lr~a~~~L~kl~~~~~----~~It~e~V~~ 619 (1342)
.| +-.++.|++.+++.++. ..+|-.+.+.
T Consensus 503 ~GFsGAdLaNlVNqAAlkAa~dga~~VtM~~LE~ 536 (752)
T KOG0734|consen 503 PGFSGADLANLVNQAALKAAVDGAEMVTMKHLEF 536 (752)
T ss_pred CCCchHHHHHHHHHHHHHHHhcCcccccHHHHhh
Confidence 44 67788899999888763 2366666553
No 428
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.33 E-value=3.7e-11 Score=132.11 Aligned_cols=192 Identities=13% Similarity=0.170 Sum_probs=123.5
Q ss_pred CCcccc-ccc--hhhHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 388 SNFNTL-IGQ--NHISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 388 ~~f~~l-vGq--~~~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
.+|++. +|. +.+........... ...+.+++|||+|+|||++.+++++++....+.
T Consensus 5 ~tFdnfv~g~~N~~a~~~~~~ia~~~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~-------------------- 64 (219)
T PF00308_consen 5 YTFDNFVVGESNELAYAAAKAIAENPGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPG-------------------- 64 (219)
T ss_dssp -SCCCS--TTTTHHHHHHHHHHHHSTTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTT--------------------
T ss_pred CccccCCcCCcHHHHHHHHHHHHhcCCCCCCceEEECCCCCCHHHHHHHHHHHHHhcccc--------------------
Confidence 479997 463 44445555444432 223468999999999999999999988632111
Q ss_pred cCCCccEEEEccCCCcCHHHHHHHHHHHhhc------CccCCceEEEeccCccCCHHH--HHHHHHhhcCCC-CcEEEEE
Q psy13354 464 NGCFMDYIEMDAASTRGINEMAQLLEQTIYA------PINARYKIYVIDEVHMLTHHA--FNAMLKTLEEPP-KYIKFIL 534 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~------p~~~~~rvviIDE~~~L~~~~--~~~Ll~~Le~p~-~~~vlIl 534 (1342)
..+..+++.. -.+++.+..... .......+++||+++.+.... ++.|..+++.-. ..-.+|+
T Consensus 65 ----~~v~y~~~~~-----f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ 135 (219)
T PF00308_consen 65 ----KRVVYLSAEE-----FIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLIL 135 (219)
T ss_dssp ----S-EEEEEHHH-----HHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEE
T ss_pred ----ccceeecHHH-----HHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEE
Confidence 1234443321 111111111110 012345699999999996543 566666655321 1224577
Q ss_pred EeCCC-C---CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 535 ATTEP-Q---KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 535 ~t~~~-~---kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+++.. . .+.+.+.||. .++++.+|+.++...++++++...|+.++++++++|++...+|+|.+...|+++..+
T Consensus 136 ts~~~P~~l~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 136 TSDRPPSELSGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGALNRLDAY 215 (219)
T ss_dssp EESS-TTTTTTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHHHHHHHHH
T ss_pred EeCCCCccccccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHHHHHHHHH
Confidence 77543 2 4567899996 799999999999999999999999999999999999999999999999999998877
Q ss_pred c
Q psy13354 608 S 608 (1342)
Q Consensus 608 ~ 608 (1342)
+
T Consensus 216 ~ 216 (219)
T PF00308_consen 216 A 216 (219)
T ss_dssp H
T ss_pred h
Confidence 4
No 429
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.32 E-value=2.3e-11 Score=157.57 Aligned_cols=204 Identities=20% Similarity=0.219 Sum_probs=152.8
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|+.+.+|..++.++||++.+..+.+.+..+...+ .+|+||||+|||++++.+++.+.... .|
T Consensus 175 ~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~r~~~~n-~lLvG~pGvGKTal~~~La~~i~~~~---------v~------ 238 (852)
T TIGR03345 175 TDLTAQAREGKIDPVLGRDDEIRQMIDILLRRRQNN-PILTGEAGVGKTAVVEGLALRIAAGD---------VP------ 238 (852)
T ss_pred hhHHHHhcCCCCCcccCCHHHHHHHHHHHhcCCcCc-eeEECCCCCCHHHHHHHHHHHHhhCC---------CC------
Confidence 568888999999999999999999999988887766 68999999999999999999986311 00
Q ss_pred hhhhccCCCccEEEEccCC------CcC--HHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------HHHHHHHHh
Q psy13354 459 CVKIDNGCFMDYIEMDAAS------TRG--INEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------HAFNAMLKT 522 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~------~~~--~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------~~~~~Ll~~ 522 (1342)
.......++.++.+. ..+ ...++++++++... ..+-|++|||+|.+.. +..+.|+.+
T Consensus 239 ----~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~---~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~ 311 (852)
T TIGR03345 239 ----PALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKAS---PQPIILFIDEAHTLIGAGGQAGQGDAANLLKPA 311 (852)
T ss_pred ----ccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhc---CCCeEEEEeChHHhccCCCccccccHHHHhhHH
Confidence 000112334343321 111 24677777776432 3456999999998842 234568888
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcCC-
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQG- 592 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~g- 592 (1342)
+++ ..+.+|.+|+..+ ...++|.+||+.+.+.+|+.++...+|+..... +++.++++++..+++.+.+
T Consensus 312 l~~--G~l~~IgaTT~~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ry 389 (852)
T TIGR03345 312 LAR--GELRTIAATTWAEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRY 389 (852)
T ss_pred hhC--CCeEEEEecCHHHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccc
Confidence 886 4788899888643 367899999999999999999999996555433 5789999999999998864
Q ss_pred -----cHHHHHHHHHHHHhh
Q psy13354 593 -----SMRDALSLTDQAINY 607 (1342)
Q Consensus 593 -----~lr~a~~~L~kl~~~ 607 (1342)
-+.+++.+||.++..
T Consensus 390 i~~r~LPDKAIdlldea~a~ 409 (852)
T TIGR03345 390 IPGRQLPDKAVSLLDTACAR 409 (852)
T ss_pred cccccCccHHHHHHHHHHHH
Confidence 577789999987654
No 430
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=99.32 E-value=1.4e-12 Score=149.38 Aligned_cols=259 Identities=20% Similarity=0.246 Sum_probs=168.3
Q ss_pred HHHHHHHHcccCeeE-EecccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHH
Q psy13354 811 QAIRFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLA 889 (1342)
Q Consensus 811 ~~~~~~~~~~~~~~i-~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~ 889 (1342)
+.|++.|++.. +++ .+.+|+||.++++.+.+|++.+|.+|.++.||||.| .++++++.
T Consensus 177 kni~~~l~~~G-~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~G--------------------rsg~dw~~ 235 (486)
T COG2509 177 KNIREYLESLG-GEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPG--------------------RSGRDWFE 235 (486)
T ss_pred HHHHHHHHhcC-cEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccC--------------------cchHHHHH
Confidence 45666776655 777 666899999999999999999999999999999999 88999999
Q ss_pred HHHHHcCCCccccccCCCcccccCccccccceeecCCCCCCCcccc-cCCCCCCCCcccc--------------------
Q psy13354 890 KRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSV-LGNINLHPKQLSC-------------------- 948 (1342)
Q Consensus 890 ~~l~~~g~~~~~~~~~~~~r~~~~si~~~~~~~~~~d~~~~~~f~~-~~~~~~~~~~~~c-------------------- 948 (1342)
...+++|..+..=.-....|+.-....++.......| ..+..+.= .+..+.++|.||.
T Consensus 236 ~l~~K~Gv~~~~~p~dIGVRvE~p~~vmd~~~~~~~~-~k~~~~t~k~~~~VrtFCmcP~G~VV~e~~e~g~~~vNG~S~ 314 (486)
T COG2509 236 MLHKKLGVKMRAKPFDIGVRVEHPQSVMDPHTRLGAA-PKFLYYTKKYGDGVRTFCMCPGGEVVAENYEDGFVVVNGHSY 314 (486)
T ss_pred HHHHhcCcccccCCeeEEEEEecchHhhCcccccccc-ceeEEEeccCCCeEEEEEECCCCeEEeeeccCceEEEcccch
Confidence 9999999987655555557777666656554432222 11111110 0111222333221
Q ss_pred -----------chhhcch---hHHHH-HHhhccc-CCCCccccccccCCCCCCcccccccCCCCCccceeEeecccccce
Q psy13354 949 -----------FITHTNE---KTHNI-IRSEFKN-SPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINE 1012 (1342)
Q Consensus 949 -----------~~~~~~~---~~~~~-i~~~~~~-~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~ 1012 (1342)
+++..+. ..|.+ ...++.. .-.++|. ..+++|+.+-...| |...+....++++| ....
T Consensus 315 ~~r~s~NtNfAllV~i~~tep~~~~~ey~r~ia~lA~~lgGg-~~i~Q~~gDf~~gR--rSt~~ri~~~~v~P---Tlk~ 388 (486)
T COG2509 315 YARKSENTNFALLVTIEFTEPFEDGIEYGRSIARLATTLGGG-KAIIQRVGDFLKGR--RSTWSRIGRVFVEP---TLKP 388 (486)
T ss_pred hcccccCcceEEEEeccccCCCCchHHHHHHHHHHHHHhcCC-cchHHHhhHHHcCC--cChHHHhhcccccc---cccc
Confidence 1111100 00000 1111111 1123321 25677777766654 33223334456778 4444
Q ss_pred eecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeC-cc--------CccccccccCcCCeeecccccC-chh
Q psy13354 1013 YYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PC--------NLKSSLETKQIHGLFFAGQING-TTG 1082 (1342)
Q Consensus 1013 ~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~-p~--------~l~~tlesk~~~gL~~aGqi~g-~~g 1082 (1342)
+-|..++..||..+...|+..|+.|++.. |||+.+...+. |. +.+..||+ .|+|||-|||-.| +.|
T Consensus 389 v~pgDls~~lP~~v~~~iiE~le~ldk~i---pG~as~dtlLygvE~k~ys~ri~~d~~~~t-~i~gLy~aGdGAG~arg 464 (486)
T COG2509 389 VTPGDLSLALPDRVVEDLIEALENLDKVI---PGVASDDTLLYGVETKFYSVRIKVDEDLST-SIKGLYPAGDGAGLARG 464 (486)
T ss_pred cccCchhhhCCHHHHHHHHHHHHHhhccC---CCcccccceeeeeeeeeeeeeEeeccccee-eecceEEccccccccch
Confidence 88999999999999999999999998877 76655544433 22 34455666 7999999999999 577
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy13354 1083 YEEAASQGLLAGLNAALFS 1101 (1342)
Q Consensus 1083 y~eA~~~G~~Ag~na~~~~ 1101 (1342)
---||++|+.|+-..+++.
T Consensus 465 I~~Aaa~Gi~~A~~i~~k~ 483 (486)
T COG2509 465 IVSAAADGIKAAEGIARKY 483 (486)
T ss_pred hHHHhhhhHHHHHHHHHHh
Confidence 7789999999998887754
No 431
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=99.32 E-value=7.4e-11 Score=146.79 Aligned_cols=221 Identities=17% Similarity=0.145 Sum_probs=148.7
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CC--
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KK-- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~-- 150 (1342)
..++.+..++.||++++.+.++|+|.+|.+++++++.+||.|+ +...+|.|....+...|+ .++++... +.
T Consensus 197 i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VL---vdRN~HKSv~haLilsga--~PVYl~P~rn~~Gi 271 (714)
T PRK15400 197 HKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTVL---IDRNCHKSLTHLMMMSDV--TPIYFRPTRNAYGI 271 (714)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHhcCCCCEEE---eecccHHHHHHHHHHcCC--eEEEecccccccCC
Confidence 3446668999999999999996777799999999999999999 555888888888888887 55554433 21
Q ss_pred -CCCC-----HHHHHHHHHhcC----CeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCC
Q psy13354 151 -EKID-----YKKVEYLAKKNK----PKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPV 217 (1342)
Q Consensus 151 -~~id-----~e~Le~~i~~~~----~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l 217 (1342)
+.++ ++.+++.+.+.. |..+++.+++|- ...+++.|+++|+.++ |++||||+.-......++ +++
T Consensus 272 ~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTYdG~~yd~~~I~~~~~~~~--ilvDEAwgah~~F~p~~~~~sam 349 (714)
T PRK15400 272 LGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGM 349 (714)
T ss_pred ccCCCccccCHHHHHHHHHhCccccCccEEEEECCCCccEecCHHHHHHHhCCCC--EEEEccchhhhccCcccCCcChh
Confidence 2345 899999887542 224555455555 5559999999999888 689999975432112221 222
Q ss_pred C-CC---c--EEEecCCccCCCCCe-eEEEEechhH-HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHH
Q psy13354 218 P-FA---D--FITSTTHKSLRGPRG-GFILMKKKYK-KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289 (1342)
Q Consensus 218 ~-~~---D--ivv~S~sK~l~gp~G-G~iv~~~~l~-~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~ 289 (1342)
. .+ | +++.|.||.++|.+. +++-.+..+- +.++....-+.+++|..+..+++-.+...+.....+...++..
T Consensus 350 ~~ga~~~~~i~vtQStHKtL~alTQaS~LHvkg~vd~~~~n~a~~m~~STSPsY~l~ASLD~a~~~m~~~~G~~l~~~~i 429 (714)
T PRK15400 350 SGGRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSI 429 (714)
T ss_pred hcCCCCCCceEEEEchhhcccchhHHhHHHHcCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 1 23 4 899999999977666 4443333221 3344432333445566666666655554443224566777888
Q ss_pred HHHHHHHHHHHhC
Q psy13354 290 KNAKILSKILDQR 302 (1342)
Q Consensus 290 ~~a~~l~~~L~~~ 302 (1342)
+.+..+++.+.+.
T Consensus 430 ~~a~~~R~~l~~~ 442 (714)
T PRK15400 430 ERAIKFRKEIKRL 442 (714)
T ss_pred HHHHHHHHHHHhC
Confidence 8888888888764
No 432
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.32 E-value=2.2e-11 Score=157.64 Aligned_cols=187 Identities=16% Similarity=0.212 Sum_probs=136.2
Q ss_pred CCCccccccchhhHHHHHHHHH------------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALD------------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~------------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
...|+++.|++.+++.|.+.+. ....+.++|||||||||||++|+++|+++++
T Consensus 449 ~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~--------------- 513 (733)
T TIGR01243 449 NVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGA--------------- 513 (733)
T ss_pred ccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCC---------------
Confidence 3479999999999999988874 2245678999999999999999999998863
Q ss_pred CCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC------------HHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT------------HHAF 516 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~------------~~~~ 516 (1342)
.++.++++. ......+++++..+.. ..+.||+|||+|.+. ....
T Consensus 514 --------------~fi~v~~~~l~~~~vGese~~i~~~f~~A~~----~~p~iifiDEid~l~~~r~~~~~~~~~~~~~ 575 (733)
T TIGR01243 514 --------------NFIAVRGPEILSKWVGESEKAIREIFRKARQ----AAPAIIFFDEIDAIAPARGARFDTSVTDRIV 575 (733)
T ss_pred --------------CEEEEehHHHhhcccCcHHHHHHHHHHHHHh----cCCEEEEEEChhhhhccCCCCCCccHHHHHH
Confidence 344444321 1122356666666543 345799999999772 2245
Q ss_pred HHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcC
Q psy13354 517 NAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQ 591 (1342)
Q Consensus 517 ~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~ 591 (1342)
+.|+..++. ....+++|++||.++.+++++++ |+ ..+.+++|+.++..++++.+.++..+. ++..++.|++.+.
T Consensus 576 ~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~ 654 (733)
T TIGR01243 576 NQLLTEMDGIQELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTE 654 (733)
T ss_pred HHHHHHhhcccCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcC
Confidence 778888773 45678899999999999999985 88 789999999999999988666544332 2335788888887
Q ss_pred C-cHHHHHHHHHHHHhh
Q psy13354 592 G-SMRDALSLTDQAINY 607 (1342)
Q Consensus 592 g-~lr~a~~~L~kl~~~ 607 (1342)
| +-.++.+.+..+...
T Consensus 655 g~sgadi~~~~~~A~~~ 671 (733)
T TIGR01243 655 GYTGADIEAVCREAAMA 671 (733)
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 6 445555666554443
No 433
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=99.32 E-value=2e-10 Score=143.03 Aligned_cols=220 Identities=18% Similarity=0.143 Sum_probs=148.2
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CC--
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KK-- 150 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~-- 150 (1342)
..++.+.+++.||++++.+.++|+|.+|.+++++++.|||.|+ +...+|-|....+-..|+ .++++... +.
T Consensus 197 i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~~~~Gd~VL---vdRN~HKSv~~aLilsga--~PVYl~P~~n~~Gi 271 (713)
T PRK15399 197 HLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYAAPAGSTLL---IDRNCHKSLAHLLMMSDV--VPIWLKPTRNALGI 271 (713)
T ss_pred HHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHhcCCCCEEE---eecccHHHHHHHHHHcCC--eeEEecccccccCC
Confidence 3445668999999999999996777799999999999999999 555888888888888887 55554432 22
Q ss_pred -CCCCH-----HHHHHHHHhc----CCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEE-EEEcccchhhhhcCCCC--CC
Q psy13354 151 -EKIDY-----KKVEYLAKKN----KPKLIIAGASAYS-QYIDFERFYHIAKNINSYF-MVDMAHYAGLIAAGEYP--NP 216 (1342)
Q Consensus 151 -~~id~-----e~Le~~i~~~----~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~L-IvDea~~~g~~~~~~~~--~~ 216 (1342)
+.+++ +.+++.+.++ +|+.+++++++|- ...++++|+++| |+.+ ++||||+.-......++ ++
T Consensus 272 ~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTYdGi~yd~~~I~~~~---g~~~ilvDEAhgah~~F~p~~~~~sa 348 (713)
T PRK15399 272 LGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTYDGLLYNTDWIKQTL---DVPSIHFDSAWVPYTHFHPIYQGKSG 348 (713)
T ss_pred cCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCCCceeeCHHHHHHHh---CCCEEEEeccchhhhhcCcccCCcCh
Confidence 23455 8899888754 2345555566655 444999999999 6666 69999975332111111 12
Q ss_pred CC---CCcEE---EecCCccCCCCCe-eEEEEechhH-HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHH
Q psy13354 217 VP---FADFI---TSTTHKSLRGPRG-GFILMKKKYK-KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288 (1342)
Q Consensus 217 l~---~~Div---v~S~sK~l~gp~G-G~iv~~~~l~-~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l 288 (1342)
+. .+|.+ +.|.||.++|.+. +++-.+..+- +.++....-+.+++|..+..+++-.+...+.....+...++.
T Consensus 349 m~~~~~aD~~i~~tQStHKtL~alTQaS~iHvk~~vd~~~~n~a~~m~~STSPsY~LmASLD~a~~~m~~~~G~~l~~~~ 428 (713)
T PRK15399 349 MSGERVPGKVIFETQSTHKMLAAFSQASLIHIKGEYDEETFNEAFMMHTSTSPSYPIVASVETAAAMLRGNPGKRLINRS 428 (713)
T ss_pred hhCCCCCCeeeeeeeehhccccccchheeeeecCCCCHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhhhhHHHHHHH
Confidence 21 24655 8999999988777 6666654322 334443333344556666666665555444322456677778
Q ss_pred HHHHHHHHHHHHhC
Q psy13354 289 VKNAKILSKILDQR 302 (1342)
Q Consensus 289 ~~~a~~l~~~L~~~ 302 (1342)
.+.+..+++.+.+.
T Consensus 429 i~~a~~fR~~l~~~ 442 (713)
T PRK15399 429 VERALHFRKEVQRL 442 (713)
T ss_pred HHHHHHHHHHHHhc
Confidence 88888888888764
No 434
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.31 E-value=3.9e-11 Score=145.05 Aligned_cols=178 Identities=13% Similarity=0.206 Sum_probs=123.6
Q ss_pred hccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCccc
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITS 450 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~ 450 (1342)
.++.+.+|++|.|++..++.++.++.. -..++.+|||||||||||++++++++.+......
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~------- 246 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGA------- 246 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhcccccc-------
Confidence 456677999999999999999888742 1356789999999999999999999998632100
Q ss_pred CCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------
Q psy13354 451 QPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH----------- 513 (1342)
Q Consensus 451 ~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~----------- 513 (1342)
.......++.+..+. ......++.+++.+......+.+-||+|||+|.+..
T Consensus 247 ------------~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e 314 (512)
T TIGR03689 247 ------------ETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVE 314 (512)
T ss_pred ------------ccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHH
Confidence 000001122221111 111234666666665544344567999999997731
Q ss_pred -HHHHHHHHhhcCCC--CcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcch
Q psy13354 514 -HAFNAMLKTLEEPP--KYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFET 580 (1342)
Q Consensus 514 -~~~~~Ll~~Le~p~--~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~ 580 (1342)
...+.|+..++... +.+++|.+||.++.++++|++ |+ ..++|++|+.++..++++.++.. .+.+++
T Consensus 315 ~~il~~LL~~LDgl~~~~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~-~l~l~~ 386 (512)
T TIGR03689 315 TTVVPQLLSELDGVESLDNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTD-SLPLDA 386 (512)
T ss_pred HHHHHHHHHHhcccccCCceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhc-cCCchH
Confidence 12467777776533 578889999999999999997 77 67999999999999999988764 344433
No 435
>KOG0733|consensus
Probab=99.29 E-value=5.8e-11 Score=138.89 Aligned_cols=176 Identities=19% Similarity=0.221 Sum_probs=135.6
Q ss_pred CccccccchhhHHHHHHHHHc----------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 389 NFNTLIGQNHISKSLINALDK----------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~----------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
.|+++-|.+..+.+|...+.. | ..+.++|||||||||||.+|+++|.++.
T Consensus 188 ~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~------------------- 248 (802)
T KOG0733|consen 188 SFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELG------------------- 248 (802)
T ss_pred chhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcC-------------------
Confidence 599999999999888777632 2 4567899999999999999999999997
Q ss_pred chhhhccCCCccEEEEccC------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-----------HHHHHH
Q psy13354 458 VCVKIDNGCFMDYIEMDAA------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH-----------AFNAML 520 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~-----------~~~~Ll 520 (1342)
..|+.+.+. +..+.+.++++++++.... +-||||||+|.++.. .+..|+
T Consensus 249 ----------vPf~~isApeivSGvSGESEkkiRelF~~A~~~a----PcivFiDeIDAI~pkRe~aqreMErRiVaQLl 314 (802)
T KOG0733|consen 249 ----------VPFLSISAPEIVSGVSGESEKKIRELFDQAKSNA----PCIVFIDEIDAITPKREEAQREMERRIVAQLL 314 (802)
T ss_pred ----------CceEeecchhhhcccCcccHHHHHHHHHHHhccC----CeEEEeecccccccchhhHHHHHHHHHHHHHH
Confidence 246666553 3344567999999886653 349999999998532 356778
Q ss_pred HhhcCC------CCcEEEEEEeCCCCCChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcC
Q psy13354 521 KTLEEP------PKYIKFILATTEPQKIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQ 591 (1342)
Q Consensus 521 ~~Le~p------~~~~vlIl~t~~~~kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~ 591 (1342)
..+++. ...+++|.+||+++.+.++|++-+ ..+.+.-|++....++|..+++...+.- +-....||+.+.
T Consensus 315 t~mD~l~~~~~~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~g-~~d~~qlA~lTP 393 (802)
T KOG0733|consen 315 TSMDELSNEKTKGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLSG-DFDFKQLAKLTP 393 (802)
T ss_pred HhhhcccccccCCCCeEEEecCCCCcccCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCCC-CcCHHHHHhcCC
Confidence 877764 246888999999999999998644 6788999999999999999998665543 334677888887
Q ss_pred CcHHHHH
Q psy13354 592 GSMRDAL 598 (1342)
Q Consensus 592 g~lr~a~ 598 (1342)
|-...-+
T Consensus 394 GfVGADL 400 (802)
T KOG0733|consen 394 GFVGADL 400 (802)
T ss_pred CccchhH
Confidence 7555444
No 436
>KOG1970|consensus
Probab=99.28 E-value=1.1e-10 Score=135.85 Aligned_cols=216 Identities=17% Similarity=0.182 Sum_probs=145.6
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHH-----cCCCC-cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALD-----KKRLH-HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~-----~~~~~-~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
-.|+.||+|.+.++|.-|+.-+.+++.+++ ..+++ +.+|++||+||||||+++.++++++.+...+.++..
T Consensus 70 elW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~--- 146 (634)
T KOG1970|consen 70 ELWVEKYKPRTLEELAVHKKKISEVKQWLKQVAEFTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPIN--- 146 (634)
T ss_pred chhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHHhccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcc---
Confidence 359999999999999999999999999998 55554 578999999999999999999999876555543322
Q ss_pred CCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhh-cC-------ccCCceEEEeccCccCCH-----HHHHHH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY-AP-------INARYKIYVIDEVHMLTH-----HAFNAM 519 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~-~p-------~~~~~rvviIDE~~~L~~-----~~~~~L 519 (1342)
|-.-........+ ... ...+....+...++.+.. .. ...++++|+|||...... ...+.|
T Consensus 147 ~~~~~~~h~~t~~------~~~-~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d~~~~f~evL 219 (634)
T KOG1970|consen 147 LKEPENLHNETSF------LMF-PYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRDDSETFREVL 219 (634)
T ss_pred ccccccccccchh------ccc-chhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhhhHHHHHHHH
Confidence 1110000000000 000 001112233334443321 11 234567999999764421 134556
Q ss_pred HHhhcCCCCcEEEEEEeCCC------C-CChHHHh--ccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcc------hhHHH
Q psy13354 520 LKTLEEPPKYIKFILATTEP------Q-KIPITVL--SRCIQFNLKKMLHHDIVNNLCYILNKENIKFE------TSALN 584 (1342)
Q Consensus 520 l~~Le~p~~~~vlIl~t~~~------~-kl~~~L~--sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~------~~al~ 584 (1342)
..|...+-..++||++-... + ...+.+. -|...+.|.|+.+.-+.+.|+.++..++...+ ...++
T Consensus 220 ~~y~s~g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri~~IsFNPIa~T~MKK~L~ric~~e~~~~s~~k~~~~~~v~ 299 (634)
T KOG1970|consen 220 RLYVSIGRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRISNISFNPIAPTIMKKFLKRICRIEANKKSGIKVPDTAEVE 299 (634)
T ss_pred HHHHhcCCCcEEEEEeccccCCCcchhhhchhhhhhccCcceEeecCCcHHHHHHHHHHHHHHhcccccCCcCchhHHHH
Confidence 66666666667666653221 1 3344444 45589999999999999999999999888777 67789
Q ss_pred HHHHhcCCcHHHHHHHHHHH
Q psy13354 585 LIATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 585 ~La~~~~g~lr~a~~~L~kl 604 (1342)
.+++.++||+|.|++.|+-.
T Consensus 300 ~i~~~s~GDIRsAInsLQls 319 (634)
T KOG1970|consen 300 LICQGSGGDIRSAINSLQLS 319 (634)
T ss_pred HHHHhcCccHHHHHhHhhhh
Confidence 99999999999999998644
No 437
>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]
Probab=99.27 E-value=3e-10 Score=128.62 Aligned_cols=272 Identities=16% Similarity=0.166 Sum_probs=183.9
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc----cCCC----CEEEEeeccCCccchhhHHhhhCCc
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV----LNPG----DTIMGMSLQEGGHLTHGMMLNMSGK 138 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al----~~pG----D~Vlv~~~~~~~~~s~~~~~~~~g~ 138 (1342)
...++.++...+.+|++++.|.+.+.+.+++|+++=...+.++ -..| +.+++++..|+.+.+.+.+ .|.
T Consensus 103 ~vqG~l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YHe~rG~~~R~~~LIP~SAHGTNPASAam---~G~ 179 (496)
T COG1003 103 QVQGYLELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYHESRGEGHRNICLIPDSAHGTNPASAAM---AGF 179 (496)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHHHHcCCCcCcEEEeeccccCCChhhHhh---cCc
Confidence 3566778888888899999999999999999998665555444 1233 5788888888877666544 333
Q ss_pred eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCccc--CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC
Q psy13354 139 WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYI--DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP 216 (1342)
Q Consensus 139 ~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~--~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~ 216 (1342)
++|.++++++|.+|+++|++++.++..++.+. +|+..+.. ++.+|+++.|++|..|+.|+|...+.++-. . |
T Consensus 180 --~VV~V~~~~~G~VDlddLk~k~~~~~AalMiT-nPsT~GvFE~~I~ei~~ivH~~Gg~vY~DGANlNA~vG~~-r--P 253 (496)
T COG1003 180 --KVVVVKCDENGNVDLDDLRAKAEDNLAALMIT-NPSTLGVFEEDIREICEIVHEAGGQVYYDGANLNAIVGLA-R--P 253 (496)
T ss_pred --eEEEEecCCCCCccHHHHHHHhccceeEEEec-cCcccccchhhHHHHHHHHHHcCCEEEecCcchhhhhccc-c--c
Confidence 88888999999999999999998655555554 55555333 899999999999999999999765555321 1 2
Q ss_pred CC-CCcEEEecCCccCCCCCe------eEEEEechhHHHHhhc----c-C--------Cc-------cccCCcHHHHHHH
Q psy13354 217 VP-FADFITSTTHKSLRGPRG------GFILMKKKYKKIINSA----V-F--------PG-------IQGGPLMHVIAAK 269 (1342)
Q Consensus 217 l~-~~Divv~S~sK~l~gp~G------G~iv~~~~l~~~l~~~----~-~--------~~-------~~~~~~~~~~~Aa 269 (1342)
-+ .+|++-..+||+|+.|.| |-|..+.+++..+-.. . . .. .+|+ .....-+
T Consensus 254 Gd~G~DV~HlNLHKTF~iPHGGGGPG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g~~~a~~Gs--~~il~~a 331 (496)
T COG1003 254 GDMGFDVVHLNLHKTFCIPHGGGGPGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIGVSAAPYGS--ASILPIA 331 (496)
T ss_pred cccccceEEeecccccccCCCCCCCCCCceehHhhccccCCCCcccCCCccccccCCCCccceeeccccCc--chHHHHH
Confidence 22 379999999999976655 5566665555544320 0 0 00 0111 1122222
Q ss_pred HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEcc----CCC-CCHHHHHHHHHHCCceee
Q psy13354 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLR----NKK-ITGKIAESILESANIICN 342 (1342)
Q Consensus 270 a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~----~~~-~~~~~~~~ll~~~GI~v~ 342 (1342)
+.-+..+..++++...+.-.-|++|+...|+. .+++...+. -.|-+.++.+ ..+ ...+++.++++ .|+...
T Consensus 332 ~~YI~~mG~~GL~~ase~AvLNANYia~rL~~-~y~~~y~~~~~~~HE~ild~r~l~~~~Gv~~~DvAKrLlD-~GfHaP 409 (496)
T COG1003 332 WAYIRMMGADGLKQASEVAVLNANYIARRLKG-YYPVPYTGENRVAHECILDARPLKKETGVRALDVAKRLLD-YGFHAP 409 (496)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhh-cCccccCCCCcceeEEEeechHhHhhcCCcHHHHHHHHHh-cCCCCC
Confidence 33334445567888888889999999999987 344433222 2344555554 222 24577777776 599999
Q ss_pred eccCCCCCC
Q psy13354 343 KNSIPNDPE 351 (1342)
Q Consensus 343 ~~~~p~~~~ 351 (1342)
..++|....
T Consensus 410 T~~FPliV~ 418 (496)
T COG1003 410 TMYFPLIVA 418 (496)
T ss_pred cccCccccc
Confidence 888886543
No 438
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.26 E-value=6.2e-11 Score=153.77 Aligned_cols=198 Identities=18% Similarity=0.243 Sum_probs=128.4
Q ss_pred Cccc-cccchhhHHHHHHHHHc----C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 389 NFNT-LIGQNHISKSLINALDK----K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 389 ~f~~-lvGq~~~~~~L~~~l~~----~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
.|++ +.||+.+++.+.+.+.. + ..++.++|+||||||||++|+.+++.++.... ...|+.-.....+
T Consensus 317 ~l~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~-------~i~~~~~~~~~~i 389 (775)
T TIGR00763 317 ILDEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKALNRKFV-------RFSLGGVRDEAEI 389 (775)
T ss_pred HhhhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHHhcCCeE-------EEeCCCcccHHHH
Confidence 3444 88999999998875531 1 22346999999999999999999999973210 0001000000011
Q ss_pred ccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH----HHHHHHHhhcCC------------
Q psy13354 463 DNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----AFNAMLKTLEEP------------ 526 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----~~~~Ll~~Le~p------------ 526 (1342)
.. ....+ + ++ ....+.+.+..+. ....||+|||+|.+... ..++|++.|+..
T Consensus 390 ~g-~~~~~--~-g~---~~g~i~~~l~~~~-----~~~~villDEidk~~~~~~~~~~~aLl~~ld~~~~~~f~d~~~~~ 457 (775)
T TIGR00763 390 RG-HRRTY--V-GA---MPGRIIQGLKKAK-----TKNPLFLLDEIDKIGSSFRGDPASALLEVLDPEQNNAFSDHYLDV 457 (775)
T ss_pred cC-CCCce--e-CC---CCchHHHHHHHhC-----cCCCEEEEechhhcCCccCCCHHHHHHHhcCHHhcCccccccCCc
Confidence 00 00000 0 00 0112333333321 22349999999999643 357888887631
Q ss_pred ---CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHH-----Hhc-----CCCcchhHHHHHHHhc--C
Q psy13354 527 ---PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYIL-----NKE-----NIKFETSALNLIATGA--Q 591 (1342)
Q Consensus 527 ---~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~-----~~~-----g~~i~~~al~~La~~~--~ 591 (1342)
..+++||+++|..+.++++|++|+.+++|++++.++...++...+ +.. ++.++++++..|++.. +
T Consensus 458 ~~d~s~v~~I~TtN~~~~i~~~L~~R~~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e 537 (775)
T TIGR00763 458 PFDLSKVIFIATANSIDTIPRPLLDRMEVIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTRE 537 (775)
T ss_pred eeccCCEEEEEecCCchhCCHHHhCCeeEEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChh
Confidence 146888999999999999999999999999999999988887655 222 4579999999998853 3
Q ss_pred CcHHHHHHHHHHHH
Q psy13354 592 GSMRDALSLTDQAI 605 (1342)
Q Consensus 592 g~lr~a~~~L~kl~ 605 (1342)
...|.+...+++++
T Consensus 538 ~g~R~l~r~i~~~~ 551 (775)
T TIGR00763 538 AGVRNLERQIEKIC 551 (775)
T ss_pred cCChHHHHHHHHHH
Confidence 46666666665544
No 439
>KOG0742|consensus
Probab=99.26 E-value=1.7e-10 Score=128.90 Aligned_cols=154 Identities=23% Similarity=0.301 Sum_probs=114.1
Q ss_pred CccccccchhhHHHHHHHHH-------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhh
Q psy13354 389 NFNTLIGQNHISKSLINALD-------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~-------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
.|+++|-+......+..... ...+..+++||||||||||.+|+.+|+..+
T Consensus 353 pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SG----------------------- 409 (630)
T KOG0742|consen 353 PLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSG----------------------- 409 (630)
T ss_pred CcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcC-----------------------
Confidence 49999998777766655441 223345799999999999999999999876
Q ss_pred hccCCCccEEEEccCCC-----cCHHHHHHHHHHHhhcCccCCceEEEeccCccC---------C---HHHHHHHHHhhc
Q psy13354 462 IDNGCFMDYIEMDAAST-----RGINEMAQLLEQTIYAPINARYKIYVIDEVHML---------T---HHAFNAMLKTLE 524 (1342)
Q Consensus 462 ~~~~~~~d~~~i~~~~~-----~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~---~~~~~~Ll~~Le 524 (1342)
.|+..+.+.+. .++..+.++++-+ .-..+.-+++|||+|.+ + ..+.|+||----
T Consensus 410 ------lDYA~mTGGDVAPlG~qaVTkiH~lFDWa---kkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG 480 (630)
T KOG0742|consen 410 ------LDYAIMTGGDVAPLGAQAVTKIHKLFDWA---KKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 480 (630)
T ss_pred ------CceehhcCCCccccchHHHHHHHHHHHHH---hhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc
Confidence 34554444321 2234455555544 33345569999999955 1 224566665556
Q ss_pred CCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc
Q psy13354 525 EPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE 574 (1342)
Q Consensus 525 ~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~ 574 (1342)
+.+.++++++++|++..++-++.+|. .+++|+-|.+++..+.|..++.++
T Consensus 481 dqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnky 531 (630)
T KOG0742|consen 481 DQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKY 531 (630)
T ss_pred ccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHH
Confidence 67789999999999999999999999 899999999999999998888763
No 440
>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]
Probab=99.26 E-value=8.7e-10 Score=127.79 Aligned_cols=297 Identities=14% Similarity=0.050 Sum_probs=172.6
Q ss_pred CceeeeecCCC-----CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASENY-----TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~-----l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
.+|.++.+..+ -+|.|.+|+.+.+......+.| . ++|-.+++.+.+.++.-+-+=|++|||+|.
T Consensus 54 ~YIDy~~~~Gp~ilGH~~p~V~~Av~~~l~~G~~fg~P--------t---e~Ei~~Aell~~~~p~~e~vrfvnSGTEAt 122 (432)
T COG0001 54 EYIDYVLGWGPLILGHAHPAVVEAVQEQLERGLSFGAP--------T---ELEVELAELLIERVPSIEKVRFVNSGTEAT 122 (432)
T ss_pred EeeehhccCcccccCCCCHHHHHHHHHHHHhcCCCCCC--------C---HHHHHHHHHHHHhcCcccEEEEecchhHHH
Confidence 44655554432 2455999988888643332222 1 566667788999988744444555999999
Q ss_pred HHHHHHc--cCCCCEEEEeeccCCccchhhHH-----------hhhCC----ceeEEEEecCCCCCCCCHHHHHHHHHhc
Q psy13354 103 QAVFFSV--LNPGDTIMGMSLQEGGHLTHGMM-----------LNMSG----KWFNSICYGLNKKEKIDYKKVEYLAKKN 165 (1342)
Q Consensus 103 ~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~-----------~~~~g----~~~~~v~~~~~~~~~id~e~Le~~i~~~ 165 (1342)
+.+++.. ....|+|+...-.|.+|...... ....| .--.++.++++ |++.+++++.+.
T Consensus 123 msAiRlARa~TgR~kIikF~G~YHG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yN-----D~~al~~~~~~~ 197 (432)
T COG0001 123 MSAIRLARAYTGRDKIIKFEGCYHGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYN-----DLEALEEAFEEY 197 (432)
T ss_pred HHHHHHHHHhhCCCeEEEEcCCCCCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCC-----CHHHHHHHHHHc
Confidence 9999866 23456777655444443322211 01111 11133344556 899999999876
Q ss_pred --CCeEEEEcC--CCCC----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcEEEecCCccCCCCCe
Q psy13354 166 --KPKLIIAGA--SAYS----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFITSTTHKSLRGPRG 236 (1342)
Q Consensus 166 --~~~liv~~~--s~~~----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Divv~S~sK~l~gp~G 236 (1342)
..+.|++.| +|.+ ...-++.|.++|++||++||.||+....-...+-....+.. +|+. ++.|.++|.--
T Consensus 198 g~~IAaVIvEPv~gn~g~i~p~~~Fl~~Lr~lt~e~G~lLI~DEViTGFR~~~gGaq~~~gi~PDlt--tlGKiIGGGlP 275 (432)
T COG0001 198 GDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIFDEVITGFRVALGGAQGYYGVEPDLT--TLGKIIGGGLP 275 (432)
T ss_pred CCcEEEEEeccccCCCCCCCCCHHHHHHHHHHHHHcCcEEEEecchhhcccCCcccccccCcCcchh--hhhhhhcCCcc
Confidence 445566644 3322 33369999999999999999999976333321222222221 4766 45699955322
Q ss_pred -eEEEEechhHHHHhhccCCccccC-CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeCC
Q psy13354 237 -GFILMKKKYKKIINSAVFPGIQGG-PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSGG 310 (1342)
Q Consensus 237 -G~iv~~~~l~~~l~~~~~~~~~~~-~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~~ 310 (1342)
|++.++.++++.+......+.-++ +.+|...++..+.++.+.. .+...+++.+..++|.+.|++ .|+++....
T Consensus 276 ~ga~gGr~eiM~~~~p~g~vyqaGT~sgnplamaAG~atl~~l~~-~~~~y~~l~~~~~~L~~gl~~~~~~~g~~~~v~~ 354 (432)
T COG0001 276 IGAFGGRAEIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLEELMT-EEGVYERLDALGERLAEGLRAAAERHGIPLTVNR 354 (432)
T ss_pred eeeeccHHHHHhhhCCCCCccccCCCCCcHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHHHhCCCeEEee
Confidence 889999999998876543333222 2245555555555554431 111456666667777766654 576665433
Q ss_pred CCCeEEEEEccCCC------------CCHHHHHHHHHHCCceeeec
Q psy13354 311 TKSHIILVDLRNKK------------ITGKIAESILESANIICNKN 344 (1342)
Q Consensus 311 ~~~~~v~i~~~~~~------------~~~~~~~~ll~~~GI~v~~~ 344 (1342)
.++.+.++...... .-..++..+|++ ||++.|.
T Consensus 355 ~gsm~~i~F~~~~~~n~~da~~sd~~~~~~~~~~~l~~-GV~l~ps 399 (432)
T COG0001 355 VGSMFGIFFTEEGVRNYADAKRSDVERFAKFFHHLLNR-GVYLAPS 399 (432)
T ss_pred ecceEEEEecCCCCCCHHHHHhhchHHHHHHHHHHHhC-CcccCCc
Confidence 44433333322111 112456666665 9998854
No 441
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.26 E-value=1.2e-10 Score=138.73 Aligned_cols=205 Identities=18% Similarity=0.252 Sum_probs=138.1
Q ss_pred cCCCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
.....|+++.|.+..++.+.+.+... ..+.++|||||||||||++|+++++.+...
T Consensus 116 ~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~------------ 183 (364)
T TIGR01242 116 RPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNAT------------ 183 (364)
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCC------------
Confidence 44557999999999999998887421 346779999999999999999999988631
Q ss_pred CCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHA 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~ 515 (1342)
++.+..+. ..+...+++++..+.. ..+.||+|||+|.+. .+.
T Consensus 184 -----------------~~~v~~~~l~~~~~g~~~~~i~~~f~~a~~----~~p~il~iDEiD~l~~~~~~~~~~~~~~~ 242 (364)
T TIGR01242 184 -----------------FIRVVGSELVRKYIGEGARLVREIFELAKE----KAPSIIFIDEIDAIAAKRTDSGTSGDREV 242 (364)
T ss_pred -----------------EEecchHHHHHHhhhHHHHHHHHHHHHHHh----cCCcEEEhhhhhhhccccccCCCCccHHH
Confidence 22222110 0111234444444332 234599999999873 122
Q ss_pred HHHHHHh---hcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 516 FNAMLKT---LEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 516 ~~~Ll~~---Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
...+.++ ++. ...++.+|++||.++.+++++.+ |+ ..+.++.|+.++..+++..++...... ++..+..++
T Consensus 243 ~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la 321 (364)
T TIGR01242 243 QRTLMQLLAELDGFDPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIA 321 (364)
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHH
Confidence 2334333 442 23578899999999999999885 55 689999999999999998877654432 123467788
Q ss_pred HhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 588 TGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.+.| +.+++.+.+..+...+ ...|+.+|+.+++..
T Consensus 322 ~~t~g~sg~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~ 362 (364)
T TIGR01242 322 KMTEGASGADLKAICTEAGMFAIREERDYVTMDDFIKAVEK 362 (364)
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHH
Confidence 87755 4455666665544432 345999999887754
No 442
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=99.25 E-value=1.1e-09 Score=131.52 Aligned_cols=290 Identities=16% Similarity=0.122 Sum_probs=157.4
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc--cCCCCEEE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV--LNPGDTIM 117 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al--~~pGD~Vl 117 (1342)
.|.+.+++.+.+.. +. .++ +. ...+++.++++.+.. ..+..+++++||++|+..+++.. ...+++|+
T Consensus 46 ~p~v~~a~~~~~~~-~~-~~~-~~------~~~~~~~~la~~l~~--~~~~~~~~~~SGseA~~~Al~~ar~~~~~~~vv 114 (375)
T PRK04260 46 HPQVQQALQKQAGL-IW-HSP-NL------YLNSLQEEVAQKLIG--DKDYLAFFCNSGAEANEAAIKIARKATGKQEII 114 (375)
T ss_pred CHHHHHHHHHHHHh-cC-ccc-Cc------cCCHHHHHHHHHHhc--CcCCEEEEcCccHHHHHHHHHHHHHhcCCCeEE
Confidence 66799998888753 21 111 11 122455534433332 11234567779999999998876 23467777
Q ss_pred EeeccCCccchhhHHhh-------hCCceeEEEE-ecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC------cccCH
Q psy13354 118 GMSLQEGGHLTHGMMLN-------MSGKWFNSIC-YGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS------QYIDF 183 (1342)
Q Consensus 118 v~~~~~~~~~s~~~~~~-------~~g~~~~~v~-~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~------~~~~l 183 (1342)
+.+..+.+......... ..+..+..+. .+. .|++.+++.+.+ +.+++++.+.+.+ ...++
T Consensus 115 ~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~dl~~l~~~l~~-~~a~vi~e~v~~~~G~~~~~~~~l 188 (375)
T PRK04260 115 TFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIF-----NDLNSVKALVNK-NTAAVMLELVQGESGVLPADKDFV 188 (375)
T ss_pred EECCCcCcccHHHHhccCCcccCCCCCCCCCCeEEeCC-----CCHHHHHHhcCC-CeEEEEECCeECCCCCcCCCHHHH
Confidence 76544433221111100 0000000011 111 378899887754 4556666543322 11248
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHhhccCCcccc
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIINSAVFPGIQG 259 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~~~~~~~~~~ 259 (1342)
++|.++|+++|+++|+||+|. |....+.... ... ..|++ ||||++++ .+.|++++++++.+.+........++
T Consensus 189 ~~~~~l~~~~~~~~i~De~~~-g~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~ig~~~~~~~~~~~~~~~~~~~t~~ 265 (375)
T PRK04260 189 KALADYCQETGILLIVDEVQT-GMGRTGKLYAFEHYGIEPDIF--TLAKGLANGVPVGAMLAKSSLGGAFGYGSHGSTFG 265 (375)
T ss_pred HHHHHHHHHcCCEEEEechhh-CCCcccchhhhHhhCCCCCEE--EecccccCCcceEEEEEcHHHHhhcCCCCCCCCCC
Confidence 999999999999999999985 4322222111 111 25754 78899942 23499999998888776433333333
Q ss_pred CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH----hCC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 260 GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD----QRG-IRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 260 ~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~----~~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
+ ++..++++.+..+.... +...++..+..+++++.+. +.+ +.... ..+.++|+.+.. ...++...++
T Consensus 266 ~--~~~~~~aa~a~l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~g~~~~~~~~~--~~~~~~~~l~ 337 (375)
T PRK04260 266 G--NKLSMAAASATLDIMLT--AGFLEQALENGNYLQEQLQKALQDKETVTTVR--GLGYMIGIETTA--DLSQLVEAAR 337 (375)
T ss_pred c--CHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHhhCCCeeEEe--ccceEEEEEecC--cHHHHHHHHH
Confidence 2 33344444455544321 1233444444455554444 333 12111 257788888743 2345555555
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +||.+.+. + ...+|++++...+
T Consensus 338 ~-~Gi~v~~~-------~---~~~lR~~~~~~~t 360 (375)
T PRK04260 338 D-KGLIVLTA-------G---TNVIRLLPPLTLT 360 (375)
T ss_pred h-CCCEEecC-------C---CCEEEEcCCCccC
Confidence 4 69998642 1 2469999877655
No 443
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.25 E-value=2.8e-10 Score=132.82 Aligned_cols=205 Identities=12% Similarity=0.199 Sum_probs=143.1
Q ss_pred Cccccc-c--chhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhcc
Q psy13354 389 NFNTLI-G--QNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464 (1342)
Q Consensus 389 ~f~~lv-G--q~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~ 464 (1342)
+|++.+ | ..-+........+. |...+.++|||+.|.|||++++++.+......+.
T Consensus 85 tFdnFv~g~~N~~A~aa~~~va~~~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~--------------------- 143 (408)
T COG0593 85 TFDNFVVGPSNRLAYAAAKAVAENPGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPN--------------------- 143 (408)
T ss_pred chhheeeCCchHHHHHHHHHHHhccCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCC---------------------
Confidence 577743 3 33444444444443 3345669999999999999999999998743221
Q ss_pred CCCccEEEEccCCCcCHHHHHHHHHHHhh------cCccCCceEEEeccCccCCH--HHHHHHHHhhcCCCCc-EEEEEE
Q psy13354 465 GCFMDYIEMDAASTRGINEMAQLLEQTIY------APINARYKIYVIDEVHMLTH--HAFNAMLKTLEEPPKY-IKFILA 535 (1342)
Q Consensus 465 ~~~~d~~~i~~~~~~~~~~i~~ii~~~~~------~p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p~~~-~vlIl~ 535 (1342)
.-++.+.... -+.+.+..... .... ...+++||+++++.. ..++.|..++..-... -.+|++
T Consensus 144 ---a~v~y~~se~-----f~~~~v~a~~~~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvlt 214 (408)
T COG0593 144 ---ARVVYLTSED-----FTNDFVKALRDNEMEKFKEKY-SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLT 214 (408)
T ss_pred ---ceEEeccHHH-----HHHHHHHHHHhhhHHHHHHhh-ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEE
Confidence 1233332221 11122211111 0112 446999999999854 2356666665542211 156777
Q ss_pred eCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc
Q psy13354 536 TTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS 608 (1342)
Q Consensus 536 t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~ 608 (1342)
+++++ .+.+.|+||+ .+++..+|+.+....+|++.++..++.++++++.++++....|+|.+...|+++..++
T Consensus 215 sdr~P~~l~~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~~a 294 (408)
T COG0593 215 SDRPPKELNGLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDAFA 294 (408)
T ss_pred cCCCchhhccccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 77655 3457899986 7999999999999999999999999999999999999999999999999999988886
Q ss_pred ---CCCCCHHHHHHHhcc
Q psy13354 609 ---SEKITLNSMQEMLSI 623 (1342)
Q Consensus 609 ---~~~It~e~V~~~v~~ 623 (1342)
+..||.+.|.+++..
T Consensus 295 ~~~~~~iTi~~v~e~L~~ 312 (408)
T COG0593 295 LFTKRAITIDLVKEILKD 312 (408)
T ss_pred HhcCccCcHHHHHHHHHH
Confidence 346999999988843
No 444
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=99.24 E-value=1.3e-09 Score=133.36 Aligned_cols=308 Identities=14% Similarity=0.074 Sum_probs=165.2
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-CCCCceEecCCHHHHHHHHHHHcc--CCCC
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-NAEAANVQPHSGSQANQAVFFSVL--NPGD 114 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g~~~~vi~~~sGs~A~~~al~al~--~pGD 114 (1342)
+-.|.+.+|+.+.+. .+..+..+ .+ .. +...++.+++++++ +..+.++|++||++|+..+++... ....
T Consensus 59 h~~p~v~~a~~~q~~-~~~~~~~~--~~-~~----~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~tgr~ 130 (433)
T PRK08117 59 HRHPKVVQAIKEQAD-KLMHGPSG--VI-YY----ESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVTKRP 130 (433)
T ss_pred CCCHHHHHHHHHHHH-hccCcccc--cc-CC----HHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhcCCC
Confidence 356779999888885 33222111 11 12 33344555888887 333567777799999999998642 2234
Q ss_pred EEEEeeccCCccchhhHHhhh-----C------CceeEEEEecCCCC--CC--------CCHHHHHHHHHh----cCCeE
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNM-----S------GKWFNSICYGLNKK--EK--------IDYKKVEYLAKK----NKPKL 169 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~-----~------g~~~~~v~~~~~~~--~~--------id~e~Le~~i~~----~~~~l 169 (1342)
.|+...-.+.++......+.. . -.++..++++.... .. -+++++++.+.. ...+.
T Consensus 131 ~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aa 210 (433)
T PRK08117 131 YIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAA 210 (433)
T ss_pred eEEEECCCcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEE
Confidence 566554333332211111110 0 01112232221100 00 145667776653 23455
Q ss_pred EEEcCCCCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCC-CCeeE
Q psy13354 170 IIAGASAYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRG-PRGGF 238 (1342)
Q Consensus 170 iv~~~s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~g-p~GG~ 238 (1342)
|++.+ ..+ ....+++|.++|++||+++|+||+|. |+...+... ...+ .+|+ .+++|++++ .+.|+
T Consensus 211 vi~Ep-i~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-G~gr~G~~~~~~~~gv~pDi--~t~sK~lg~G~piga 286 (433)
T PRK08117 211 VIIEP-VLGEGGYIVPPKSFLKKLREICDRHGILLIFDEVQT-GFGRTGEWFAAQTFGVVPDI--MTIAKGIASGLPLSA 286 (433)
T ss_pred EEECC-eeCCCCCccCCHHHHHHHHHHHHHcCCEEEEecchh-ccCccccchhHhhcCCCCCE--eehhhhccCCCccee
Confidence 66533 322 22249999999999999999999997 432222211 1111 1465 477899943 22388
Q ss_pred EEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEee-CCCCCeE
Q psy13354 239 ILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVS-GGTKSHI 315 (1342)
Q Consensus 239 iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~-~~~~~~~ 315 (1342)
+++++++++.+......+++++ +|..++++.+..+.+.. +...+++.++.+++.+.|.+.. +.+.. -...+.+
T Consensus 287 v~~~~~i~~~~~~~~~~~T~~~--np~~~aaa~a~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~vrg~Gl~ 362 (433)
T PRK08117 287 VVASKELMEQWPLGSHGTTFGG--NPVACAAALATLEVIKE--EKLLDNANEMGAYALERLEVLKEKHPVIGDVRGIGLM 362 (433)
T ss_pred EEEcHHHHhhccCCCCCCCCCc--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCceeeeecCCcE
Confidence 9999988887754333333333 45555555566655431 2356677777888888887642 22111 1122334
Q ss_pred EEEEccCCC------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 316 ILVDLRNKK------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 316 v~i~~~~~~------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+++.+.... ....+...++ ++||++.+... . ...+|++.+..++.+
T Consensus 363 ~gi~~~~~~~~~~~~~~~~~~~~l~-~~Gv~~~~~g~----~----~~~lRl~p~~~~t~~ 414 (433)
T PRK08117 363 IGIEIVDPDGEPDGDAVEKILDKCL-EKGLLFYLCGN----A----GNVLRMIPPLTVTKE 414 (433)
T ss_pred EEEEEecCCCCcchHHHHHHHHHHH-HCCCEEeecCC----C----CCEEEEeCCccCCHH
Confidence 455553221 1223444444 56998865311 1 246999887766643
No 445
>PLN00144 acetylornithine transaminase
Probab=99.24 E-value=1.3e-09 Score=130.66 Aligned_cols=297 Identities=14% Similarity=0.099 Sum_probs=168.6
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc---C--
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL---N-- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~---~-- 111 (1342)
.+-.|.+.+++.+.+.. .. +... .+ .. +...++.+++.+..+.+ .+.+++||++|++.+++... +
T Consensus 30 Gh~~p~v~~ai~~q~~~-~~--~~~~-~~-~~----~~~~~la~~l~~~~~~~-~v~f~~sGseA~e~AlklAr~~~~~~ 99 (382)
T PLN00144 30 GHGDPDWVKAVAEQAGT-LA--HVSN-VY-HT----IPQVELAKRLVASSFAD-RVFFCNSGTEANEAAIKFARKYQRVR 99 (382)
T ss_pred CCCCHHHHHHHHHHHHh-cC--Cccc-cc-cC----HHHHHHHHHHHhcCCCC-eEEEeCCcHHHHHHHHHHHHHHHhcc
Confidence 45677899998888853 21 1111 11 12 22334555677766544 55666699999999998652 1
Q ss_pred ----C------CCEEEEeeccCCccchhhHHhhhCC---c-----eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 112 ----P------GDTIMGMSLQEGGHLTHGMMLNMSG---K-----WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 112 ----p------GD~Vlv~~~~~~~~~s~~~~~~~~g---~-----~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
+ ..+|+.....+.++-.....+.... . ......++.+ |++.+++.+...+++.+++.
T Consensus 100 ~~~~~~~~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~~~~~~~aavi~e 174 (382)
T PLN00144 100 APDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYG-----NLEAARKLIQKGKTAAVFVE 174 (382)
T ss_pred CCCCccccccccceEEEECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCC-----CHHHHHHhcCCCCeEEEEEc
Confidence 0 2467765544433321111111000 0 0011222322 78999988865567777776
Q ss_pred CCCCC----ccc--CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEec
Q psy13354 174 ASAYS----QYI--DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKK 243 (1342)
Q Consensus 174 ~s~~~----~~~--~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~ 243 (1342)
|..++ ... .+++|.++|++||+++|+||+|.. +...+.... ... .+| +.+++|.+++ .+.|++++++
T Consensus 175 P~q~~gg~~~~~~~~~~~l~~l~~~~g~llI~DEv~tg-~gr~g~~~~~~~~~~~PD--i~t~sK~l~~G~pig~v~~~~ 251 (382)
T PLN00144 175 PVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCG-LGRTGYLWAHEAYGVEPD--IMTLAKPLAGGLPIGAVLVTE 251 (382)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhC-CCccchHhhhhhcCCCCC--EEEecccccCCcceEEEEEcH
Confidence 54333 222 399999999999999999999862 211221111 111 257 4566799943 2339999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+.......++++ +|..++++.+.++.+.+ .++.+++.+..+++.+.|.+ .+...... ..+.++|+.
T Consensus 252 ~~~~~~~~~~~~~T~~~--~pl~~aaa~a~l~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~~~~~~vr-g~G~~~~l~ 326 (382)
T PLN00144 252 KVASAINPGDHGSTFAG--GPLVCNAALAVLDKISK--PGFLASVAKKGEYLRELLRRKLGGNPHVKEVR-GVGLLVGIQ 326 (382)
T ss_pred HHHhccCCCCCCCCCCC--CHHHHHHHHHHHHHHhh--chHHHHHHHHHHHHHHHHHHHHhhCCCceeee-cCceEEEEE
Confidence 99888765434333433 45556666655555532 23455666666666665554 22111111 256788888
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.. ....+...+++ +||.+.+... ...+|++++...+
T Consensus 327 l~~--~~~~~~~~~~~-~Gv~i~~~~~---------~~~lrl~p~~~~~ 363 (382)
T PLN00144 327 LDV--PAGPLVDACRD-SGLLVLTAGK---------GDVVRLVPPLVIS 363 (382)
T ss_pred ecC--ccHHHHHHHHH-CCeEEeecCC---------CCEEEEeCCCccC
Confidence 732 23456665554 6999976410 1469998877544
No 446
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=99.23 E-value=8.3e-10 Score=134.84 Aligned_cols=261 Identities=15% Similarity=0.048 Sum_probs=143.3
Q ss_pred CceeeeecC-----CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE-----NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~-----n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++. .+.+|.+.+++.+.+.+.. .+....+...+ +++++++.+...+.+++++||++|+
T Consensus 49 ~ylD~~~g~~~~~lGh~~p~v~~ai~~q~~~~~-------~~~~~~~~~~~----lae~l~~~~~~~~~v~~~~sGseA~ 117 (423)
T TIGR00713 49 EYIDYVLSWGPLILGHAHPRVVEAVKEALERGT-------SYGAPTEAEIL----LAKEIISRVPSVEMVRFVNSGTEAT 117 (423)
T ss_pred EEEEccccccccccCCCCHHHHHHHHHHHHhCC-------cCCCCCHHHHH----HHHHHHHhCCcccEEEEeCCHHHHH
Confidence 446655442 3667889999998885311 11222333334 4447777765444566677999999
Q ss_pred HHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCc---------------eeEEEEecCCCCCCCCHHHHHHHHHh-
Q psy13354 103 QAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGK---------------WFNSICYGLNKKEKIDYKKVEYLAKK- 164 (1342)
Q Consensus 103 ~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~---------------~~~~v~~~~~~~~~id~e~Le~~i~~- 164 (1342)
..+++.. ....++|++....+.++..........+. ....+.++.+ |++++++.+..
T Consensus 118 e~Alk~ar~~~gr~~ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~ 192 (423)
T TIGR00713 118 MSAVRLARGYTGRDKIIKFEGCYHGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYN-----DLEALEEVFEEY 192 (423)
T ss_pred HHHHHHHHHhhCCCEEEEEcCCCCCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCC-----CHHHHHHHHHHc
Confidence 9999864 23457888766555443211111000000 0011222222 78999998874
Q ss_pred -cCCeEEEEc-CCCCC----c-ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCC-CC
Q psy13354 165 -NKPKLIIAG-ASAYS----Q-YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRG-PR 235 (1342)
Q Consensus 165 -~~~~liv~~-~s~~~----~-~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~g-p~ 235 (1342)
.+.+.|++. .++++ . ...+++|.++|++||+++|+||+|.....+......... ..|++ +++|.+++ .+
T Consensus 193 ~~~~aavi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~r~g~~~~~~~~~~~pDi~--t~sK~l~~G~p 270 (423)
T TIGR00713 193 GEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMTGFRVALGGAQEYFGVEPDLT--TLGKIIGGGLP 270 (423)
T ss_pred CCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHhCCEEEEEccccccccCcchhHHHhCCCcchh--hhhhhhcCCCc
Confidence 234555553 22223 1 234899999999999999999998532211110000111 24654 68899942 23
Q ss_pred eeEEEEechhHHHHhhccCCcc-ccCCcHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 236 GGFILMKKKYKKIINSAVFPGI-QGGPLMHVIAAKAVAFKEVLKP--DFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 236 GG~iv~~~~l~~~l~~~~~~~~-~~~~~~~~~~Aaa~al~~~l~~--~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
.|++++++++++.+......+. .+...++..++++.+.++.+.+ ..+...+.....++.+.+.+.+.++..
T Consensus 271 ig~v~~~~~i~~~~~~~~~~~~~~T~~~~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 344 (423)
T TIGR00713 271 VGAFGGRREIMERLAPEGPVYQAGTLSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDTGIPH 344 (423)
T ss_pred eeeeeEHHHHHHhhCcCCCeeeccCCCCCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 4999999999988864211111 1112244444445455554432 234444444444555555555666554
No 447
>PLN02624 ornithine-delta-aminotransferase
Probab=99.23 E-value=1.7e-09 Score=133.09 Aligned_cols=296 Identities=14% Similarity=0.126 Sum_probs=159.8
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN------- 111 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~------- 111 (1342)
-.|.+.+++.+.+. .+.. ..+.+ ..+...+ +.+.++++++.+.+.+ ++||++|+..+++....
T Consensus 92 ~~p~v~~ai~~ql~-~~~~--~~~~~--~~~~~~~----la~~L~~~~~~~~~~f-~~SGseA~e~AlklAr~~~~~~~g 161 (474)
T PLN02624 92 CHPKIIKALTEQAE-KLTL--SSRAF--YNDKFPE----FAEYLTSMFGYDMVLP-MNTGAEGVETAIKLARKWGYEKKG 161 (474)
T ss_pred CCHHHHHHHHHHHH-hcCC--ccccc--CCHHHHH----HHHHHHhhcCCCeEEE-eCChHHHHHHHHHHHHHHHHhhcC
Confidence 37779999999885 3322 21211 2233334 4447888887665555 45999999999975431
Q ss_pred -C-CC-EEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCC
Q psy13354 112 -P-GD-TIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASA 176 (1342)
Q Consensus 112 -p-GD-~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~ 176 (1342)
+ +. .|+...-.+.+.... .+...+-. ..+..++.+ |++.+++.+... ..+.|++.+..
T Consensus 162 ~~~~~~~ii~~~~~yHG~t~~--~~s~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~iaaiiiEpv~ 234 (474)
T PLN02624 162 IPKNEAIIVSCCGCFHGRTLA--AISMSCDNEATRGFGPLLPGHLKVDFG-----DLDALEKIFEEDGDRIAAFLFEPIQ 234 (474)
T ss_pred CCCCCcEEEEECCCcCCCCHH--HhhcCCCccccccCCCCCCCceEeCCC-----CHHHHHHHHHhCCCCEEEEEECCcc
Confidence 1 33 355443222222111 11111100 011222332 788999888643 34567775544
Q ss_pred CC--ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC-CCcEEEecCCccCCCC--CeeEEEEechh
Q psy13354 177 YS--QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP-FADFITSTTHKSLRGP--RGGFILMKKKY 245 (1342)
Q Consensus 177 ~~--~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~-~~Divv~S~sK~l~gp--~GG~iv~~~~l 245 (1342)
.+ ... .+++|.++|++||+++|+||+|. |....+..... .. .+|+++. +|.++++ +.|++++++++
T Consensus 235 ~~~G~v~p~~~~L~~l~~lc~~~gillI~DEv~t-G~GrtG~~~a~~~~~i~pDiv~l--sK~lggG~~pigav~~~~~i 311 (474)
T PLN02624 235 GEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQT-GLARTGKMLACDWEEVRPDVVIL--GKALGGGVIPVSAVLADKDV 311 (474)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CcCcCcchhhHHhcCCCCCEEEe--cccccCCCCcceeeeecHHH
Confidence 33 122 39999999999999999999996 32112211110 11 2577764 6999543 23888898888
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cE-Eee-CCCCCeEEEEEcc
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IR-IVS-GGTKSHIILVDLR 321 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~-~~~-~~~~~~~v~i~~~ 321 (1342)
++.+.......++++ ++...+++.+.++.+.+. ...++..++.+++++.|.+.. ++ .+. ....+.++.+.+.
T Consensus 312 ~~~~~~~~~~~T~~g--~pl~~aaa~aaLe~l~~~--~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~ 387 (474)
T PLN02624 312 MLCIKPGEHGSTFGG--NPLASAVAMAALQVVQDE--KLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLN 387 (474)
T ss_pred HhHhccCCcCCCCCC--CHHHHHHHHHHHHHHHhc--hHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEec
Confidence 877754333233332 334444444444544311 244566666777777776632 21 011 0112334444443
Q ss_pred CCC----CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 322 NKK----ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 322 ~~~----~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
... ...++...+ .++||++.+. + ...+|++.+..++.
T Consensus 388 ~~~~~~~~a~~~~~~L-~e~GV~v~p~-------~---~~~lR~~p~l~~t~ 428 (474)
T PLN02624 388 SPKLGPVSAYDVCLKL-KERGLLAKPT-------H---DTIIRLAPPLSISE 428 (474)
T ss_pred CCCcChHHHHHHHHHH-HhCCeEEecC-------C---CCEEEEECCccCCH
Confidence 321 123555554 5569999753 1 24699987665553
No 448
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=99.23 E-value=1.4e-09 Score=132.76 Aligned_cols=302 Identities=13% Similarity=0.090 Sum_probs=169.0
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc---C-
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL---N- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~---~- 111 (1342)
.+-.|.+.+|+.+.+. ... .. +.++ .. +....+.+++.+.+... ..+.|++|||+|+..+++... +
T Consensus 97 GH~~p~v~~Ai~~ql~-~l~--~~-~~~~-~~----~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t~~ 167 (459)
T PRK11522 97 GHRNPVVVSAVQNQLA-KQP--LH-SQEL-LD----PLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP 167 (459)
T ss_pred CCCCHHHHHHHHHHHh-hCc--cc-cccc-CC----HHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHhcc
Confidence 4556779999888875 221 11 1111 12 33444555777776543 456677799999999998652 1
Q ss_pred CC-CEEEEeeccCCccchhhHHhhhCCce-e---------EEEEecCCCCCCCCHHHHHHHHHh-----cCCeEEEEcCC
Q psy13354 112 PG-DTIMGMSLQEGGHLTHGMMLNMSGKW-F---------NSICYGLNKKEKIDYKKVEYLAKK-----NKPKLIIAGAS 175 (1342)
Q Consensus 112 pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~-~---------~~v~~~~~~~~~id~e~Le~~i~~-----~~~~liv~~~s 175 (1342)
+| ..|+...-.|.++-..... ..+.. + .+..++.+ |.+++++.+.. ...+.+++.+
T Consensus 168 ~gr~~ii~~~~~yHG~t~~~ls--~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~~~iAavIvEp- 239 (459)
T PRK11522 168 RGKFTFIATSGAFHGKSLGALS--ATAKSTFRKPFMPLLPGFRHVPFG-----NIEAMRTALSECKKTGDDVAAVILEP- 239 (459)
T ss_pred CCCcEEEEecCCCCCCcHHHhh--hcCCcccccCCCCCCCCCcccCCC-----CHHHHHHHHHHhhccCCcEEEEEEec-
Confidence 22 3566654444333211111 11100 0 01112222 67888887753 2334555533
Q ss_pred CCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC--CeeEEEEec
Q psy13354 176 AYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP--RGGFILMKK 243 (1342)
Q Consensus 176 ~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp--~GG~iv~~~ 243 (1342)
..+ ....++++.++|++||+++|+||+|. |+--.+.... ... .+|++ +++|.+++. +-|++++++
T Consensus 240 v~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~t-G~GRtG~~~a~e~~gv~PDiv--t~gK~lggG~~Pigav~~~~ 316 (459)
T PRK11522 240 IQGEGGVILPPEGYLTAVRKLCDEFGALLILDEVQT-GMGRTGKMFACEHENVQPDIL--CLAKALGGGVMPIGATIATE 316 (459)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEecccee-cCCccchhhhhhccCCCCCEE--EechhhhCCCccceeEEEcH
Confidence 322 22249999999999999999999984 3211121111 111 26887 556999653 236677777
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcE-EeeC-CCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIR-IVSG-GTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~-~~~~-~~~~~~v~i~ 319 (1342)
++++.+......+..+...+|..+|++.+.++.+.+. +..++..++.++|.+.|+++ .++ ++.. ...+.++.+.
T Consensus 317 ~i~~~~~~~~~~~~~T~~gnp~~~Aaala~L~~i~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~gie 394 (459)
T PRK11522 317 EVFSVLFDNPFLHTTTFGGNPLACAAALATINVLLEQ--NLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIE 394 (459)
T ss_pred HHHHHhccCCcccCCCCCCCHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEE
Confidence 7777664321112222222677777777777776432 46788888889999888774 222 1110 1234566677
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+........+...+++ +||++.+.. .. ...+|+..+..++.
T Consensus 395 l~~~~~~~~i~~~l~~-~Gvl~~~~~----~~----~~~lr~~Ppl~~t~ 435 (459)
T PRK11522 395 FVDNEIGYNFASEMFR-QRVLVAGTL----NN----AKTIRIEPPLTLTI 435 (459)
T ss_pred ecCchHHHHHHHHHHH-CCeEEEecC----CC----CCEEEEECCccCCH
Confidence 6554323355555555 599997531 11 24689887776553
No 449
>KOG0733|consensus
Probab=99.22 E-value=1.2e-10 Score=136.18 Aligned_cols=170 Identities=18% Similarity=0.233 Sum_probs=128.3
Q ss_pred CCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+|+-+++++..+|.-+|-.. ..|.++|++||||||||.+|+++|++..
T Consensus 507 dVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag---------------- 570 (802)
T KOG0733|consen 507 DVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAG---------------- 570 (802)
T ss_pred CCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhcc----------------
Confidence 347999999999999998888432 4467899999999999999999999876
Q ss_pred CCcchhhhccCCCccEEEEccCC--CcCH----HHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAAS--TRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHAFN 517 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~--~~~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~~~ 517 (1342)
.+|+.+.+.. +..+ ..+++++..+.. +.+-||++||+|.|. ...+|
T Consensus 571 -------------~NFisVKGPELlNkYVGESErAVR~vFqRAR~----saPCVIFFDEiDaL~p~R~~~~s~~s~RvvN 633 (802)
T KOG0733|consen 571 -------------ANFISVKGPELLNKYVGESERAVRQVFQRARA----SAPCVIFFDEIDALVPRRSDEGSSVSSRVVN 633 (802)
T ss_pred -------------CceEeecCHHHHHHHhhhHHHHHHHHHHHhhc----CCCeEEEecchhhcCcccCCCCchhHHHHHH
Confidence 3577766542 1222 346666665543 345699999999883 23577
Q ss_pred HHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHHHHHh
Q psy13354 518 AMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNLIATG 589 (1342)
Q Consensus 518 ~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~La~~ 589 (1342)
.||--|+.- ...+.+|.+||+++.+++++++ |. .......|+.++...+|+...+..+..+++++ ++.|++.
T Consensus 634 qLLtElDGl~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~ 711 (802)
T KOG0733|consen 634 QLLTELDGLEERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARN 711 (802)
T ss_pred HHHHHhcccccccceEEEeecCCCcccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhc
Confidence 888777654 3467778889999999999996 44 56777888999999999999987666676655 6667764
No 450
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=99.22 E-value=3.2e-09 Score=128.68 Aligned_cols=303 Identities=13% Similarity=0.070 Sum_probs=169.1
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN---- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~---- 111 (1342)
..-.|.+.+|+.+.+.. .. +. +.++ .. +....+++++.+.+... ..++|++||++|+..+++....
T Consensus 90 Gh~hp~v~~Av~~ql~~-l~--~~-~~~~-~~----~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t~~ 160 (442)
T TIGR03372 90 GHRNPNVIAAVENQLAK-QP--LH-SQEL-LD----PLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQSP 160 (442)
T ss_pred CCCCHHHHHHHHHHHHh-CC--Cc-cccc-CC----HHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHHhh
Confidence 55667799998888753 21 11 1111 12 23344556788776544 5567777999999999986521
Q ss_pred CC-CEEEEeeccCCccchhhHHhhh-----CCc---eeEEEEecCCCCCCCCHHHHHHHHHh-----cCCeEEEEcCCCC
Q psy13354 112 PG-DTIMGMSLQEGGHLTHGMMLNM-----SGK---WFNSICYGLNKKEKIDYKKVEYLAKK-----NKPKLIIAGASAY 177 (1342)
Q Consensus 112 pG-D~Vlv~~~~~~~~~s~~~~~~~-----~g~---~~~~v~~~~~~~~~id~e~Le~~i~~-----~~~~liv~~~s~~ 177 (1342)
+| ..|++....+.++......+.. .+. ...+..++.+ |.+.+++.+.. ...+.+++. |..
T Consensus 161 ~gr~~ii~~~~~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~-----d~~~~~~~l~~~~~~~~~vAavIvE-pv~ 234 (442)
T TIGR03372 161 RGKFTFIAASGAFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFG-----DIEAMLKALNECKKTGDDVAAIILE-PIQ 234 (442)
T ss_pred cCCcEEEEECCCccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCC-----CHHHHHHHHHHHhcCCCcEEEEEEe-Ccc
Confidence 23 4677655444333221111100 000 0011122322 67777776642 234556653 333
Q ss_pred C-------cccCHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CCcEEEecCCccCCCC--CeeEEEEech
Q psy13354 178 S-------QYIDFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FADFITSTTHKSLRGP--RGGFILMKKK 244 (1342)
Q Consensus 178 ~-------~~~~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp--~GG~iv~~~~ 244 (1342)
+ ....++++.++|++||+++|+||+|. +|-. +.... ... .+|+++ ++|.+++. +.|+++++++
T Consensus 235 g~gG~~~p~~~yl~~l~~lc~~~g~llI~DEV~tG~GRt--G~~~a~e~~gv~PDivt--~gK~lg~G~~Pigavv~~~~ 310 (442)
T TIGR03372 235 GEGGVILPPEGYLPAVRALCDEFGALLILDEVQTGMGRT--GKMFACEHEGVQPDILC--LAKALGGGVMPIGATIATEA 310 (442)
T ss_pred CCCCcccCCHHHHHHHHHHHHHcCCEEEEeecccCCCcc--ccchhhhhcCCCCCeee--ehhhhcCCcccceEEEecHH
Confidence 2 22249999999999999999999984 3222 22111 111 268876 56999543 3477778888
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cE-Eee-CCCCCeEEEEEc
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IR-IVS-GGTKSHIILVDL 320 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~-~~~-~~~~~~~v~i~~ 320 (1342)
+++.+......+..+...+|..+|++.+.++.+.+. ++.++..+..+++.+.|++.. ++ .+. -...+.++.+.+
T Consensus 311 i~~~~~~~~~~~~~T~~gnp~~~Aaa~a~L~~i~~~--~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel 388 (442)
T TIGR03372 311 VFSVLFDNPFLHTTTFGGNPLACAAALATINELLEK--NLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEF 388 (442)
T ss_pred HHHhhhccCccccCCCCCCHHHHHHHHHHHHHHHhc--cHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEe
Confidence 888774321112222222567777777777766421 245666777777877776631 11 111 113356677777
Q ss_pred cCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
........+...+++ +||++.+...+ ...+|+..+-..+.
T Consensus 389 ~~~~~~~~i~~~l~~-~Gvl~~~~~~~--------~~~lr~~Ppl~~t~ 428 (442)
T TIGR03372 389 RDNEIGYAFAKELFQ-QNILVAGTLNN--------AKSIRIEPPLTITI 428 (442)
T ss_pred CChHHHHHHHHHHHH-CCcEEeecCCC--------CCEEEEECCcccCH
Confidence 544323455666665 59999753211 23588877765553
No 451
>KOG1942|consensus
Probab=99.22 E-value=4.5e-10 Score=120.56 Aligned_cols=119 Identities=29% Similarity=0.392 Sum_probs=102.5
Q ss_pred EEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC-------------CCCChHHHhccEEEEEEcCCCHHHHHHHHH
Q psy13354 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE-------------PQKIPITVLSRCIQFNLKKMLHHDIVNNLC 568 (1342)
Q Consensus 502 vviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~-------------~~kl~~~L~sR~~~i~~~~l~~~el~~~l~ 568 (1342)
|++|||+|+|.-+.+..|-+.||.|-..+ +||++|+ |+-+++.+++|..++.-.++++++++++++
T Consensus 299 VLFIDEVhMLDiEcFTyL~kalES~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDRl~Iirt~~y~~~e~r~Ii~ 377 (456)
T KOG1942|consen 299 VLFIDEVHMLDIECFTYLHKALESPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLIIRTLPYDEEEIRQIIK 377 (456)
T ss_pred ceEeeehhhhhhHHHHHHHHHhcCCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhheeEEeeccCCHHHHHHHHH
Confidence 99999999999999999999999986555 6788764 457788999999999999999999999999
Q ss_pred HHHHhcCCCcchhHHHHHHHh-cCCcHHHHHHHHHHHHhh----cCCCCCHHHHHHHh
Q psy13354 569 YILNKENIKFETSALNLIATG-AQGSMRDALSLTDQAINY----SSEKITLNSMQEML 621 (1342)
Q Consensus 569 ~~~~~~g~~i~~~al~~La~~-~~g~lr~a~~~L~kl~~~----~~~~It~e~V~~~v 621 (1342)
.+++.+|+.++++++.+|++. +..++|-++++|.-+... ..+.|..++|+++-
T Consensus 378 ~Ra~~E~l~~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~ak~~g~~~i~v~dvee~~ 435 (456)
T KOG1942|consen 378 IRAQVEGLQVEEEALDLLAEIGTSTSLRYAVQLLTPASILAKTNGRKEISVEDVEEVT 435 (456)
T ss_pred HHHhhhcceecHHHHHHHHhhccchhHHHHHHhcCHHHHHHHHcCCceeecccHHHHH
Confidence 999999999999999999996 467999999998743322 23458888888765
No 452
>KOG0053|consensus
Probab=99.22 E-value=2.5e-10 Score=131.41 Aligned_cols=212 Identities=19% Similarity=0.214 Sum_probs=147.1
Q ss_pred CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEe
Q psy13354 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICY 145 (1342)
Q Consensus 67 ~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~ 145 (1342)
+++....++. .++.+.|+..+++++ ||..|+..++..++.+|++|+..+..|++....... ....|+....+
T Consensus 75 ~nPt~~~le~----~iaal~ga~~~l~fs-SGmaA~~~al~~L~~~g~~iV~~~~~Y~gT~~~l~~~~~~~gie~~~v-- 147 (409)
T KOG0053|consen 75 GNPTRDVLES----GIAALEGAAHALLFS-SGMAAITVALLHLLPAGDHIVATGDVYGGTLRILRKFLPKFGGEGDFV-- 147 (409)
T ss_pred CCCchHHHHH----HHHHHhCCceEEEec-ccHHHHHHHHHHhcCCCCcEEEeCCCcccHHHHHHHHHHHhCceeeee--
Confidence 4555566666 899999999999999 999999999999999999999988888776554433 34556543433
Q ss_pred cCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC-CcE
Q psy13354 146 GLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADF 222 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~-~Di 222 (1342)
+.+ |++.++.++.+ +.++|++-.|.|| ...|+++|+++|+++|++||||+..+.+. ...++.. +||
T Consensus 148 d~~-----~~~~~~~~i~~-~t~~V~~ESPsNPll~v~DI~~l~~la~~~g~~vvVDnTf~~p~-----~~~pL~lGADI 216 (409)
T KOG0053|consen 148 DVD-----DLKKILKAIKE-NTKAVFLESPSNPLLKVPDIEKLARLAHKYGFLVVVDNTFGSPY-----NQDPLPLGADI 216 (409)
T ss_pred chh-----hHHHHHHhhcc-CceEEEEECCCCCccccccHHHHHHHHhhCCCEEEEeCCcCccc-----ccChhhcCCCE
Confidence 444 67788888877 4566666556666 66699999999999999999999865432 2446665 999
Q ss_pred EEecCCccCCCCC---eeEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGPR---GGFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 223 vv~S~sK~l~gp~---GG~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++.|.+|+++|-. ||.++.+ +++...+..... ..++...|..+.. ..+. +. .+.-+.++..+++-.+.+.
T Consensus 217 V~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~--~lg~~~~p~~~~l--l~Rg-lk-tl~lRi~~~~ena~~~A~~ 290 (409)
T KOG0053|consen 217 VVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQE--DLGWCEDPFDLFL--LSRG-LK-TLHLRINKHSENALKIALL 290 (409)
T ss_pred EEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHH--HhcCCCCHHHHHH--HhcC-cc-hhhhhHHHHHHHHHHHHHH
Confidence 9999999995532 3888887 677766655321 1222223333222 2222 21 2333456667777777777
Q ss_pred HHhC
Q psy13354 299 LDQR 302 (1342)
Q Consensus 299 L~~~ 302 (1342)
|+..
T Consensus 291 Le~~ 294 (409)
T KOG0053|consen 291 LEAH 294 (409)
T ss_pred hhhC
Confidence 7764
No 453
>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type. This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.
Probab=99.22 E-value=4.5e-09 Score=130.32 Aligned_cols=254 Identities=14% Similarity=0.145 Sum_probs=164.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHccC----C-----C--------------------
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVLN----P-----G-------------------- 113 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~~----p-----G-------------------- 113 (1342)
+..++....+|+++.+++++++|.+ ..++++ +||.||..++.+.-. | +
T Consensus 115 ~e~SP~~t~lE~~vi~~la~l~G~~~~~G~~Ts-GGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~ 193 (608)
T TIGR03811 115 YESSPATSQMEEEVGKEFATLMGYKNGWGHIVA-DGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKE 193 (608)
T ss_pred cccCchHHHHHHHHHHHHHHHhCCCCCCeEEeC-ChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhccccccc
Confidence 4456677899999999999999987 345555 999999877665411 0 0
Q ss_pred -----------------------C------EEEEeeccCCccchhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHH
Q psy13354 114 -----------------------D------TIMGMSLQEGGHLTHGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 114 -----------------------D------~Vlv~~~~~~~~~s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~ 163 (1342)
. .++ .+..+|++..+++...|.+. .++.+++++++++|++.|++.+.
T Consensus 194 ~~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~vl---~s~~aHyS~~KAa~ilGlG~~~vv~VpvD~~~rmd~~~L~~~I~ 270 (608)
T TIGR03811 194 IMDLLESAGDQIDEIKAHSARSGKDLQKLGKWL---VPQTKHYSWLKAADIIGIGLDQVIPVPVDSNYRMDINELEKIIR 270 (608)
T ss_pred ccccccccccchhhhhhhccccccccccceEEE---ECCCccHHHHHHHHHcCCCcccEEEeecCCCCcCCHHHHHHHHH
Confidence 0 223 23356888888888888764 34567888899999999998886
Q ss_pred hc----CC-eEEEEcCCC--CCcccCHHHHHHHH---HHcCC--EEEEEcccchhh---hhcC-----------------
Q psy13354 164 KN----KP-KLIIAGASA--YSQYIDFERFYHIA---KNINS--YFMVDMAHYAGL---IAAG----------------- 211 (1342)
Q Consensus 164 ~~----~~-~liv~~~s~--~~~~~~l~~I~~la---~~~gi--~LIvDea~~~g~---~~~~----------------- 211 (1342)
+. .| ..||.+.+. .+...|+++|+++| +++|+ |++||+|++... +...
T Consensus 271 ~~~~~g~p~~~VVataGTT~~GaiDpl~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~~ 350 (608)
T TIGR03811 271 KLAAEKTPILGVVGVVGSTEEGAVDGIDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAEY 350 (608)
T ss_pred HHHhcCCCeEEEEEEcCCcCCcccCCHHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhcccccc
Confidence 42 23 334443333 33667999999999 66887 699999987532 1110
Q ss_pred -CC--------------CCCCCCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhccCCc---------------ccc
Q psy13354 212 -EY--------------PNPVPFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSAVFPG---------------IQG 259 (1342)
Q Consensus 212 -~~--------------~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~~~~~---------------~~~ 259 (1342)
.+ ...++.+|.++..+||++..|.+ |+++.++ .+.+.+.. ..++ ...
T Consensus 351 ~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py~~G~ll~Rd~~~~~~~~~-~a~Yl~~~~~~~p~~~g~~~le 429 (608)
T TIGR03811 351 GVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPYSAGGIVIQDIRMRDVISY-FATYVFEKGADIPALLGAYILE 429 (608)
T ss_pred cccccccccccHhHHHHHhcCcCceEEEeCcccccccCCCeEEEEEeCHHHHHHHhc-CcchhccccccCccccccccee
Confidence 00 00134589999999999978888 8777765 33332211 1111 111
Q ss_pred CC-cHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhCC-------cEE--eeCCCCCeEEEEEccCCC
Q psy13354 260 GP-LMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQRG-------IRI--VSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 260 ~~-~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~g-------~~~--~~~~~~~~~v~i~~~~~~ 324 (1342)
++ ......+++.++..+ ..+++.++.++..++++++.+.|.+.+ +++ .. ++..+++.+.+...+
T Consensus 430 gSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~~~~~~~~~~el~~~~-~pdlniV~Fr~~~~g 505 (608)
T TIGR03811 430 GSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNLEFKVGDKEIEVHPLT-KPDFNMVDYVFNEKG 505 (608)
T ss_pred cCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCeeEEecC-CCCcceEEEEEecCC
Confidence 11 112244445555544 455888999999999999999998843 444 33 345666666665444
No 454
>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]
Probab=99.22 E-value=7.8e-10 Score=126.82 Aligned_cols=232 Identities=19% Similarity=0.176 Sum_probs=155.7
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCC
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~p 112 (1342)
-+-+.+++++++++..... .+.. . .++ ..+.....+. .+.+.++...|+..+.+++ +.+.|+..++.++..+
T Consensus 34 lG~s~~~~e~iea~~~~~~-~~v~-L---e~~l~~g~~~~R~~-~~~~~~~~~~~aea~~ivn-nn~aAVll~~~al~~~ 106 (395)
T COG1921 34 LGRSLYSPEAIEAMKEAMR-APVE-L---ETDLKTGKRGARLT-ELAELLCGLTGAEAAAIVN-NNAAAVLLTLNALAEG 106 (395)
T ss_pred CCCccCCHHHHHHHHHHhc-ccce-e---eeecccchhhHHHH-HHHHHHhcccchhheeeEC-CcHHHHHHHHhhhccC
Confidence 3568899999999888774 3321 1 111 1222222333 3445666666677777777 8888999888888774
Q ss_pred CCEEEE--eeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHH
Q psy13354 113 GDTIMG--MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYH 188 (1342)
Q Consensus 113 GD~Vlv--~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~ 188 (1342)
+..|+. ..++ ++++.....++..|+ +.+.+. ....-...+++.++.+++..++.++.++++ ...+++++++
T Consensus 107 ~EvVis~g~lV~-gg~~~v~d~~~~aG~--~l~EvG--~tn~t~~~d~~~AIne~ta~llkV~s~~~~f~~~l~~~~l~~ 181 (395)
T COG1921 107 KEVVVSRGELVE-GGAFRVPDIIRLAGA--KLVEVG--TTNRTHLKDYELAINENTALLLKVHSSNYGFTGMLSEEELVE 181 (395)
T ss_pred CeEEEEcccccc-CCCCChhHHHHHcCC--EEEEec--ccCcCCHHHHHHHhccCCeeEEEEeeccccccccccHHHHHH
Confidence 444444 3333 678888888888888 445333 334457889999999988888888888776 4448899999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHHHHH
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIA 267 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~ 267 (1342)
+||++|+++++|.+.+.-.-........+. .+|++++|..|.|+||.+|+|++++++++.++........-. .-+..+
T Consensus 182 ia~~~~lpvivD~aSg~~v~~e~~l~~~la~GaDLV~~SgdKllgGPqaGii~GkKelI~~lq~~~l~Ralrv-~K~tla 260 (395)
T COG1921 182 IAHEKGLPVIVDLASGALVDKEPDLREALALGADLVSFSGDKLLGGPQAGIIVGKKELIEKLQSHPLKRALRV-DKETLA 260 (395)
T ss_pred HHHHcCCCEEEecCCccccccccchhHHHhcCCCEEEEecchhcCCCccceEechHHHHHHHHhhhhhhhhhc-CcHhHH
Confidence 999999999999976432110000011112 379999999999999999999999999999876422221111 124566
Q ss_pred HHHHHHHHhcc
Q psy13354 268 AKAVAFKEVLK 278 (1342)
Q Consensus 268 Aaa~al~~~l~ 278 (1342)
++.+++..+..
T Consensus 261 ~l~~aLe~y~~ 271 (395)
T COG1921 261 ALEAALELYLQ 271 (395)
T ss_pred HHHHHHHHHcC
Confidence 66667766654
No 455
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.21 E-value=3.8e-10 Score=129.16 Aligned_cols=222 Identities=17% Similarity=0.161 Sum_probs=139.2
Q ss_pred cccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC--CCCcchhhhccCCCc
Q psy13354 391 NTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC--GKCSVCVKIDNGCFM 468 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c--~~~~~~~~~~~~~~~ 468 (1342)
..=.++..+...+...+..+ ++.++++||+|+|||++++.+++.+.+...... ...+| ..+.....+...
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~--~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~---~~~~~~~~~~~~l~~i~~~--- 94 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQR--EGFILITGEVGAGKTTLIRNLLKRLDQERVVAA---KLVNTRVDAEDLLRMVAAD--- 94 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcC--CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEe---eeeCCCCCHHHHHHHHHHH---
Confidence 33344566777777777654 456899999999999999999998864210000 00000 001001111100
Q ss_pred cEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC---CCcEEEEEEeCCCC-----
Q psy13354 469 DYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP---PKYIKFILATTEPQ----- 540 (1342)
Q Consensus 469 d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p---~~~~vlIl~t~~~~----- 540 (1342)
..+..........++.+...+......+++.+++|||++.++....+.|....+-. ...+.++++. .++
T Consensus 95 --lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g-~~~~~~~l 171 (269)
T TIGR03015 95 --FGLETEGRDKAALLRELEDFLIEQFAAGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVG-QPEFRETL 171 (269)
T ss_pred --cCCCCCCCCHHHHHHHHHHHHHHHHhCCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcC-CHHHHHHH
Confidence 01111111112223333333333333456679999999999987777665443321 1222334443 222
Q ss_pred --CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcC----CCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc----C
Q psy13354 541 --KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKEN----IKFETSALNLIATGAQGSMRDALSLTDQAINYS----S 609 (1342)
Q Consensus 541 --kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g----~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~----~ 609 (1342)
.....+.+|. ..+++++++.+++..++..+++..| ..+++++++.|++.++|++|.+...++.+...+ .
T Consensus 172 ~~~~~~~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~~~~a~~~~~ 251 (269)
T TIGR03015 172 QSPQLQQLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRLLLSAFLEEK 251 (269)
T ss_pred cCchhHHHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHcCC
Confidence 1234677785 7899999999999999999998765 369999999999999999999999998876654 3
Q ss_pred CCCCHHHHHHHhcc
Q psy13354 610 EKITLNSMQEMLSI 623 (1342)
Q Consensus 610 ~~It~e~V~~~v~~ 623 (1342)
+.|+.++|++++..
T Consensus 252 ~~i~~~~v~~~~~~ 265 (269)
T TIGR03015 252 REIGGEEVREVIAE 265 (269)
T ss_pred CCCCHHHHHHHHHH
Confidence 45999999988854
No 456
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=99.20 E-value=1.4e-09 Score=132.50 Aligned_cols=308 Identities=14% Similarity=0.036 Sum_probs=167.8
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN---- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~---- 111 (1342)
..-.|.+.+++.+.+.. .. +.....+ .. +...++++++.+.+... +.+.|++||++|++.+++....
T Consensus 57 Gh~~p~v~~ai~~q~~~-~~--~~~~~~~-~~----~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~~~ 128 (423)
T PRK05964 57 GHNHPYIDQAIREQLDR-LD--HVIFAGF-TH----EPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYWRN 128 (423)
T ss_pred CCCCHHHHHHHHHHHhh-CC--Ccccccc-CC----HHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 44567799998888752 21 1110011 11 33344566788777422 4556667999999999986521
Q ss_pred ---CC-CEEEEeeccCCccchhhHHhhhC--------C--ceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcC-
Q psy13354 112 ---PG-DTIMGMSLQEGGHLTHGMMLNMS--------G--KWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGA- 174 (1342)
Q Consensus 112 ---pG-D~Vlv~~~~~~~~~s~~~~~~~~--------g--~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~- 174 (1342)
+| .+|+.....|.++......+... + .....++++.++....+++.+++.+.+. ..+.|++.+
T Consensus 129 ~~~~~r~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~ 208 (423)
T PRK05964 129 RGEPGRSRFLSLRGGYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPL 208 (423)
T ss_pred cCCCCCcEEEEEcCCcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecc
Confidence 33 46776555444432222111100 0 1123344443211112377888888643 334555533
Q ss_pred -CCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--CeeEEEEec
Q psy13354 175 -SAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--RGGFILMKK 243 (1342)
Q Consensus 175 -s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~GG~iv~~~ 243 (1342)
.... ....+++|.++|++||+++|+||+|. |....+... .... .+|+++ ++|+++|+ +.|++++++
T Consensus 209 i~~~gG~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~G~~~a~~~~~v~pDi~~--~~K~l~gG~~p~~av~~~~ 285 (423)
T PRK05964 209 VQGAGGMLFYDPRYLAELRRICDRHGVLLIFDEIAT-GFGRTGTLFACEQAGVSPDIMC--LSKGLTGGYLPLAATLCTA 285 (423)
T ss_pred cccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-CCCcCcchhHHHhcCCCCCeee--eehhhhcCcccceEEEEcH
Confidence 1111 33469999999999999999999984 221112111 1111 257764 56999554 238899999
Q ss_pred hhHHHHhhc--cCCccccC--CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-CCCCeEEE
Q psy13354 244 KYKKIINSA--VFPGIQGG--PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-GTKSHIIL 317 (1342)
Q Consensus 244 ~l~~~l~~~--~~~~~~~~--~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~~~~~~v~ 317 (1342)
++++.+... ......++ ..+|..++++.+..+.+.. +...++..++.+++.+.|++. .++.+.. ...+.++.
T Consensus 286 ~i~~~~~~~~~~~~~~~~~T~~~np~~~aaa~a~l~~l~~--~~~~~~~~~~g~~l~~~l~~l~~~~~i~~vrg~Gl~~~ 363 (423)
T PRK05964 286 EIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFED--EPVLERVAALSAGLAEGLEPFRDLPGVADVRVLGAIGA 363 (423)
T ss_pred HHHHhhhcCCcccccccCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHhhccCCCeEEeecccEEEE
Confidence 998887532 11111111 2245555555555554431 234577777788888888764 2222111 12345556
Q ss_pred EEccCCC---CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 318 VDLRNKK---ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 318 i~~~~~~---~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+.... ....+...++ ++||++.+. .+.+|++.+..++.
T Consensus 364 i~l~~~~~~~~~~~l~~~l~-~~Gv~v~~~-----------~~~lR~~p~l~~t~ 406 (423)
T PRK05964 364 VELDRPVLERDGPALRAFAL-ERGVLLRPL-----------GNTIYLMPPYIITA 406 (423)
T ss_pred EEeccCcchhHHHHHHHHHH-HCCeEEEec-----------CCEEEEeCCcccCH
Confidence 6665432 1234555555 469999753 12589988876664
No 457
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=99.20 E-value=3.2e-09 Score=128.14 Aligned_cols=302 Identities=12% Similarity=0.035 Sum_probs=167.7
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc------
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------ 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------ 110 (1342)
.+-.|.+.+++.+.+.. .. +....+ .. +...++.+++.+..+..+.+.+++||++|++.+++...
T Consensus 55 Gh~~p~v~~ai~~q~~~-~~--~~~~~~--~~----~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~~~~ 125 (408)
T PRK04612 55 GHNDPDLVAALTEQAGK-LW--HTSNVF--YS----APPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWASSQ 125 (408)
T ss_pred CCCCHHHHHHHHHHHHh-cc--cccccc--CC----HHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHHHhh
Confidence 55677799998888753 21 111111 12 22334555777766433566777799999999998653
Q ss_pred C--CC-CEEEEeeccCCccchhhHHhhh-C--Ccee-----EEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 111 N--PG-DTIMGMSLQEGGHLTHGMMLNM-S--GKWF-----NSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 111 ~--pG-D~Vlv~~~~~~~~~s~~~~~~~-~--g~~~-----~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+ ++ .+|+.....|.+.........- . ...+ .+..++. .|++.+++.+...+++++++.|....
T Consensus 126 g~~~~r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~~~~~~~aavi~eP~~~~g 200 (408)
T PRK04612 126 GRPADKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDF-----NDVEALEAAMAGGDVAAVMLEPIQGEG 200 (408)
T ss_pred CCCCCCcEEEEECCCcCCccHHHHHhcCCcccccCCCCCCCCceEcCC-----CCHHHHHHhhCCCCEEEEEECCccCCC
Confidence 1 12 3577655444333221111100 0 0000 0111122 27888988886556677777553322
Q ss_pred ---c--ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhh
Q psy13354 179 ---Q--YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 ---~--~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~ 251 (1342)
. ...+++|.++|++||+++|+||+|. |....+....... ....-+.+++|++++. +-|++++++++++.+..
T Consensus 201 g~~~~~~~~l~~l~~l~~~~g~llI~DEv~t-g~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~piga~~~~~~~~~~~~~ 279 (408)
T PRK04612 201 GVMPAAPGFLARVRALCDQHDALLVLDEIQC-GMGRTGTLFAHWQEQVTPDIVTLAKALGGGFPIGAMLAGPKVAETMQF 279 (408)
T ss_pred CCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCCchhhhhhcCCCCCEEEEcchhcCCCceEEEEECHHHHhhhcC
Confidence 1 2259999999999999999999986 2211222111111 1122344667999431 22888888888887765
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeC-CCCCeEEEEEccCC--CCC
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSG-GTKSHIILVDLRNK--KIT 326 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~-~~~~~~v~i~~~~~--~~~ 326 (1342)
....+++++ +|..++++.+.++...+ .++.++..++.+++.+.|+++. +.++.. ...+.++.+.+... ...
T Consensus 280 ~~~~~t~~~--~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~i~~vrg~Gl~~~i~~~~~~~~~a 355 (408)
T PRK04612 280 GAHGTTFGG--NPLAAAVARVALRKLAS--PQIAANVARQSAALRAGLEALNAEFGVFAQVRGRGLMLGAVLAPAHAGQA 355 (408)
T ss_pred CCcCCCCCC--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhhCCCeeeeeccceEEEEEecCchhhHH
Confidence 444444443 45566666666666542 3467788888888888887642 221110 12234555555321 112
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
..+... +.++||++.+. + ...+|+..+-..+
T Consensus 356 ~~i~~~-l~~~Gvlv~~~-------g---~~~lRl~Ppl~it 386 (408)
T PRK04612 356 GAILDL-AAEHGLLLLQA-------G---PDVLRFVPALNLT 386 (408)
T ss_pred HHHHHH-HHHCCeEEeeC-------C---CCEEEEcCCccCC
Confidence 334444 45569998642 1 2468987666544
No 458
>PLN02414 glycine dehydrogenase (decarboxylating)
Probab=99.19 E-value=3.1e-09 Score=137.58 Aligned_cols=300 Identities=13% Similarity=0.073 Sum_probs=183.5
Q ss_pred eecCCC----CcHHHHHHHhHHHHhccccCCCCCCccCC--cchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHH
Q psy13354 33 IASENY----TSLAVMEAQGTLLTNKYAEGYPGKRYYGG--CKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQA 104 (1342)
Q Consensus 33 ~a~~n~----l~~~v~eal~~~l~~~~~~g~~~~~~~~~--~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~ 104 (1342)
+.+..+ +|+.+.+++.+... .|. .|. -|.. ..+..+.....+..+++++|.+ ++.++. ++|.+.++
T Consensus 107 fiG~G~y~~~~P~~v~~~i~~~~~-~~T-ayt---PYqaEisQG~lqal~~~Qt~ia~LtG~~~anaSL~d-~aTAaaea 180 (993)
T PLN02414 107 YIGMGYYNTHVPPVILRNILENPG-WYT-QYT---PYQAEIAQGRLESLLNYQTMITDLTGLPMSNASLLD-EGTAAAEA 180 (993)
T ss_pred ccCCCCCCccCCHHHHHHHHhChH-HHh-hcC---CCchHHHHHHHHHHHHHHHHHHHHhCCChhhEeecC-ChHHHHHH
Confidence 444444 67777788776542 121 111 1211 2344444555777999999998 344455 88888888
Q ss_pred HHHHc-cCCC--CEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 105 VFFSV-LNPG--DTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 105 al~al-~~pG--D~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+++++ +.+| |+|++++..|+.....+.. .+..|+.+..+ +.+.. + ...+ ....++++.+++. .
T Consensus 181 ~~~a~~~~~g~~~~VlVs~~~hP~~~~v~~t~a~~~GieV~~v--~~~~~---~------~~~~-~v~~vlvq~P~~~G~ 248 (993)
T PLN02414 181 MAMCNNILKGKKKKFLIASNCHPQTIDVCQTRADGLGLEVVVA--DEKDF---D------YSSG-DVCGVLVQYPATDGE 248 (993)
T ss_pred HHHHHhcccCCCCEEEEcCccCHhHHHHHHHhhhhcCCEEEEe--cchhh---c------cccC-ceEEEEEecCCCCeE
Confidence 87777 4544 7899988888877665543 34567655555 43311 1 0111 2223445455444 5
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC-----CCCCeeEEEEechhHHHHhhcc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL-----RGPRGGFILMKKKYKKIINSAV 253 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l-----~gp~GG~iv~~~~l~~~l~~~~ 253 (1342)
..|+++|+++||++|+++++ .++..+...- .++-+ .+||++++.+||. +||..||+++++++...+....
T Consensus 249 v~dv~~I~~~ah~~GaL~iV-aad~lal~~l---~~pge~GADi~vgsgqKwg~P~G~GGP~aGflavr~~~~r~~Pgri 324 (993)
T PLN02414 249 VLDYAEFVKNAHANGVKVVM-ATDLLALTML---KPPGEWGADIVVGSAQRFGVPMGYGGPHAAFLATSQEYKRLMPGRI 324 (993)
T ss_pred EcCHHHHHHHHHHcCCEEEE-EECHHHhcCC---CCHhhccCcEEEECCCccccCCCCCCCCeeEEEECHHHHhhCCCcc
Confidence 66999999999999999999 7776654411 11212 4899999999998 3444499999998765443111
Q ss_pred CCc-----------------------cccCCcHHHHHHHHHHH-----HHhccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 254 FPG-----------------------IQGGPLMHVIAAKAVAF-----KEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 254 ~~~-----------------------~~~~~~~~~~~Aaa~al-----~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
..+ -.++++.....++.+++ ..+...+++++.+++.+++.++.+.|...|++
T Consensus 325 VG~s~d~~g~~~~~l~LqtReqhiRrEkaTsNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~ 404 (993)
T PLN02414 325 IGVSVDSSGKPALRMAMQTREQHIRRDKATSNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQ 404 (993)
T ss_pred cCcccCCCCCcccccccccccchhhhcccccchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCc
Confidence 000 01233332222222111 22344578888899999999999999988988
Q ss_pred EeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+..+ .....+.+.++ .+.++.++++ ++||.++... .+.+|+|++..+|.
T Consensus 405 ~~~~-~~f~~vt~~~~---~~~~v~~~L~-~~gI~l~~~~----------~~~lrvs~~e~~T~ 453 (993)
T PLN02414 405 VQSL-PFFDTVKVKCS---DADAIADAAA-KVGINLRVVD----------ANTVTVSFDETTTL 453 (993)
T ss_pred cCCC-CCcCeEEEecC---CHHHHHHHHH-HCCCeeEEec----------CCeEEEEeeccCCH
Confidence 7543 33445556654 2345555555 5599777432 23599999998885
No 459
>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.18 E-value=2.7e-09 Score=130.08 Aligned_cols=294 Identities=13% Similarity=0.054 Sum_probs=160.5
Q ss_pred CceeeeecC-----CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE-----NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~-----n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++. .+-.|.+.+++.+.+.. . .. .+... +....+++++.+.+.....+++++||++|+
T Consensus 51 ~~lD~~~g~~~~~lGh~~p~i~~a~~~~~~~-~-~~-----~~~~~----~~~~~la~~L~~~~~~~~~v~~~~sGseA~ 119 (426)
T PRK00062 51 EYIDYVGSWGPMILGHAHPEVVEAVIEAAEK-G-LS-----FGAPT----ELEVELAELVIELVPSIEMVRMVNSGTEAT 119 (426)
T ss_pred EEEEcccchhhhhcCCCCHHHHHHHHHHHHh-C-Cc-----CCCCC----HHHHHHHHHHHHhCCCCCEEEEecCHHHHH
Confidence 456665542 25667799999888864 2 11 11222 233345557777653223455666999999
Q ss_pred HHHHHHccC--CCCEEEEeeccCCccchhhHHh----------hh-CCce----eEEEEecCCCCCCCCHHHHHHHHHh-
Q psy13354 103 QAVFFSVLN--PGDTIMGMSLQEGGHLTHGMML----------NM-SGKW----FNSICYGLNKKEKIDYKKVEYLAKK- 164 (1342)
Q Consensus 103 ~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~----------~~-~g~~----~~~v~~~~~~~~~id~e~Le~~i~~- 164 (1342)
..+++.... .+++|++....+.++....... .. .+.. ...+.++.+ |++.+++.+..
T Consensus 120 e~Aik~a~~~~g~~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~i~~~ 194 (426)
T PRK00062 120 MSAIRLARGYTGRDKIIKFEGCYHGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYN-----DLEAVEELFEEY 194 (426)
T ss_pred HHHHHHHHHHhCCCeEEEEcCccCCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCC-----CHHHHHHHHHhC
Confidence 999997633 3577887665555442111110 00 0100 011222222 78899888864
Q ss_pred -cCCeEEEEcC--CCCCccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCC-CCCCC-CCcEEEecCCccCCCC-
Q psy13354 165 -NKPKLIIAGA--SAYSQYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEY-PNPVP-FADFITSTTHKSLRGP- 234 (1342)
Q Consensus 165 -~~~~liv~~~--s~~~~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~-~~~l~-~~Divv~S~sK~l~gp- 234 (1342)
.+.+.|++.+ ++.+... .+++|.++|++||+++|+||+|. |+..+... ...+. .+|+ .+++|.+++.
T Consensus 195 ~~~~aaiivEpv~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~-G~r~g~~~~~~~~~~~pDi--~~~gK~l~~G~ 271 (426)
T PRK00062 195 GDEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMT-GFRVALGGAQGYYGVTPDL--TTLGKIIGGGL 271 (426)
T ss_pred CCcEEEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeechh-ccccCCccHHHHhCCCcch--HhhhhHhhCCC
Confidence 2344555532 2222222 39999999999999999999996 33221111 11111 1465 4678999432
Q ss_pred CeeEEEEechhHHHHhhccCCccc-cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeC
Q psy13354 235 RGGFILMKKKYKKIINSAVFPGIQ-GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSG 309 (1342)
Q Consensus 235 ~GG~iv~~~~l~~~l~~~~~~~~~-~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~ 309 (1342)
+.|++++++++++.+......+.+ +...++..++++.+.++.+.+. +..++..++.+++++.|++ .++.....
T Consensus 272 p~ga~~~~~~i~~~~~~~~~~~~~~T~~~~p~~~aaa~a~L~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~vr 349 (426)
T PRK00062 272 PVGAFGGRREIMEQLAPLGPVYQAGTLSGNPLAMAAGLATLKLLKEP--GFYEELEALTKRLAEGLKEAAKKAGIPLTVN 349 (426)
T ss_pred cceeeeEHHHHHHhhccCCCceecccCcCCHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHHHHHHHHHHHcCCceEEE
Confidence 248889999998888642222221 1123455555566666655432 3566667777777777664 35443221
Q ss_pred CCCCeEEEEEccCCC----------C---CHHHHHHHHHHCCceeeec
Q psy13354 310 GTKSHIILVDLRNKK----------I---TGKIAESILESANIICNKN 344 (1342)
Q Consensus 310 ~~~~~~v~i~~~~~~----------~---~~~~~~~ll~~~GI~v~~~ 344 (1342)
+ .+.++.+.+.... . ...+...+++ +||++.+.
T Consensus 350 g-~G~~~~i~l~~~~~~~~~~~~~~~~~~~~~i~~~l~~-~Gv~v~~~ 395 (426)
T PRK00062 350 R-VGSMFGLFFTDEPVTNYADAKKSDTERFARFFHAMLD-EGVYLAPS 395 (426)
T ss_pred E-ecceEEEEEecCCCcchhhhccccHHHHHHHHHHHHH-CCeEeecC
Confidence 2 2334444443210 0 1245555554 59998764
No 460
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.18 E-value=8.8e-10 Score=127.91 Aligned_cols=234 Identities=17% Similarity=0.236 Sum_probs=149.6
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHh-------ccCCCCCCCCcccCCCCCCcchhh
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL-------NCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L-------~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
.|..++||++++..|.-++-.....+ ++|.|++|+|||++++.++..+ .|+. +..-..||..|..|..
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~~~g~-vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~r~ 76 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDPKIGG-VMVMGDRGTGKSTAVRALAALLPEIKAVAGCPF----NSSPSDPEMMCEEVRI 76 (337)
T ss_pred CccccccHHHHHHHHHHHhcCCCCCe-EEEEcCCCCCHHHHHHHHHHhhcccccccCCCC----CCCCCCccccChHHhh
Confidence 48999999999988866666655555 7899999999999999999987 3321 1223578889999987
Q ss_pred hccC--------CCccEEEEc--cC--CCcCHHHHHHHHHH----HhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhc
Q psy13354 462 IDNG--------CFMDYIEMD--AA--STRGINEMAQLLEQ----TIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLE 524 (1342)
Q Consensus 462 ~~~~--------~~~d~~~i~--~~--~~~~~~~i~~ii~~----~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le 524 (1342)
.... ....|..+- .+ ...|.-++...+.. ....+++ ++.-++++||++.++...++.|++.++
T Consensus 77 ~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L~~~~Q~~Ll~~l~ 156 (337)
T TIGR02030 77 RVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLLEDHLVDVLLDVAA 156 (337)
T ss_pred hhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhCCHHHHHHHHHHHH
Confidence 5321 011122211 11 11122233333221 1112233 455699999999999999999999997
Q ss_pred CCC-------------CcEEEEEEeCCCC-CChHHHhccE-EEEEEcCCCH-HHHHHHHHHHHH----------------
Q psy13354 525 EPP-------------KYIKFILATTEPQ-KIPITVLSRC-IQFNLKKMLH-HDIVNNLCYILN---------------- 572 (1342)
Q Consensus 525 ~p~-------------~~~vlIl~t~~~~-kl~~~L~sR~-~~i~~~~l~~-~el~~~l~~~~~---------------- 572 (1342)
+.. ..+++|.+.|-.+ .+.+++.+|+ ..+.+..++. ++..+++.....
T Consensus 157 ~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~~~~~~~~~~~~e~ 236 (337)
T TIGR02030 157 SGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDADPHAFCEKWQTEQ 236 (337)
T ss_pred hCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhcccCchhhhhhhhhhh
Confidence 642 2333333333223 5788999999 6777887765 555555544211
Q ss_pred -------------hcCCCcchhHHHHHHHh---cCC-cHHHHHHHHHHHHhhc--C--CCCCHHHHHHHhccCcHH
Q psy13354 573 -------------KENIKFETSALNLIATG---AQG-SMRDALSLTDQAINYS--S--EKITLNSMQEMLSIIDQK 627 (1342)
Q Consensus 573 -------------~~g~~i~~~al~~La~~---~~g-~lr~a~~~L~kl~~~~--~--~~It~e~V~~~v~~~~~~ 627 (1342)
-..+.+++++++++++. ++. ++|..+.++.-+.+++ . ..|+.+||+.++......
T Consensus 237 ~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~~~a~~vL~H 312 (337)
T TIGR02030 237 EALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIRRVAVLALRH 312 (337)
T ss_pred hcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHH
Confidence 13566888888887764 344 5788887776544433 3 359999999877544433
No 461
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.18 E-value=7.3e-10 Score=140.99 Aligned_cols=219 Identities=20% Similarity=0.220 Sum_probs=149.1
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
|..+-+--.++.++|.+..++.+.+.+...... .+||+||||+|||++++.++..+.... .+.....|
T Consensus 176 l~~~a~~g~~~~liGR~~ei~~~i~iL~r~~~~-n~LLvGppGvGKT~lae~la~~i~~~~----vP~~l~~~------- 243 (758)
T PRK11034 176 LNQLARVGGIDPLIGREKELERAIQVLCRRRKN-NPLLVGESGVGKTAIAEGLAWRIVQGD----VPEVMADC------- 243 (758)
T ss_pred HHHHHHcCCCCcCcCCCHHHHHHHHHHhccCCC-CeEEECCCCCCHHHHHHHHHHHHHhcC----CCchhcCC-------
Confidence 333344556778999999999999999886544 468999999999999999998864211 00000011
Q ss_pred hhccCCCccEEEEccC------CC--cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC---------HHHHHHHHHhh
Q psy13354 461 KIDNGCFMDYIEMDAA------ST--RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------HHAFNAMLKTL 523 (1342)
Q Consensus 461 ~~~~~~~~d~~~i~~~------~~--~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------~~~~~~Ll~~L 523 (1342)
.++.++.+ .. .....++.++..+.. .+..|++|||+|.+. .+..+.|..++
T Consensus 244 --------~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~----~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L 311 (758)
T PRK11034 244 --------TIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLL 311 (758)
T ss_pred --------eEEeccHHHHhcccchhhhHHHHHHHHHHHHHh----cCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH
Confidence 12222211 11 112335566655543 234599999999771 22345566677
Q ss_pred cCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHH----hcCCCcchhHHHHHHHhcCC--
Q psy13354 524 EEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILN----KENIKFETSALNLIATGAQG-- 592 (1342)
Q Consensus 524 e~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~----~~g~~i~~~al~~La~~~~g-- 592 (1342)
+. ..+.+|.+|+..+ ...++|.+|++.+.+.+|+.++...+|+.... .+++.++++++..+++.+..
T Consensus 312 ~~--g~i~vIgATt~~E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi 389 (758)
T PRK11034 312 SS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYI 389 (758)
T ss_pred hC--CCeEEEecCChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccc
Confidence 65 4677888887654 35789999999999999999999999886554 36889999999998876543
Q ss_pred ----cHHHHHHHHHHHHhhc--------CCCCCHHHHHHHhccCc
Q psy13354 593 ----SMRDALSLTDQAINYS--------SEKITLNSMQEMLSIID 625 (1342)
Q Consensus 593 ----~lr~a~~~L~kl~~~~--------~~~It~e~V~~~v~~~~ 625 (1342)
-+.+++.+|+.+++.. ...|+.++|.+++....
T Consensus 390 ~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 390 NDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIA 434 (758)
T ss_pred cCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHHh
Confidence 5668999999887543 12367777777765443
No 462
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.18 E-value=7.2e-10 Score=128.29 Aligned_cols=234 Identities=17% Similarity=0.248 Sum_probs=140.2
Q ss_pred cCCCCccccccchhhHHHHHHHH-HcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC-----Ccc
Q psy13354 385 YRPSNFNTLIGQNHISKSLINAL-DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK-----CSV 458 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l-~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~-----~~~ 458 (1342)
-.|..|++++||+++++.+.-++ ..| . +++||+|+||+|||++++.+++.+.+.... ...+|+. |..
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~~-~-~~vLl~G~pG~gKT~lar~la~llP~~~~~-----e~~~~~~~~~~~~~~ 74 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDPG-I-GGVLVFGDRGTGKSTAVRALAALLPLIKAV-----EGCPVNSARPEDCPE 74 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhccC-C-CcEEEEcCCCCCHHHHHHHHHHHCCCcchh-----cccccccCcccCCcc
Confidence 35889999999999999887554 344 3 348999999999999999999999753211 1122222 111
Q ss_pred hhhhccCC----CccEEEEcc--CC--CcCHHHHHHHHHH----HhhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcC
Q psy13354 459 CVKIDNGC----FMDYIEMDA--AS--TRGINEMAQLLEQ----TIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEE 525 (1342)
Q Consensus 459 ~~~~~~~~----~~d~~~i~~--~~--~~~~~~i~~ii~~----~~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~ 525 (1342)
+....... ...|..+-. +. ..|.-++...+.. ....+++ ++.-++++||++.++...++.|++.+++
T Consensus 75 ~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl~~~~q~~Lle~mee 154 (334)
T PRK13407 75 WAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLLEDHIVDLLLDVAQS 154 (334)
T ss_pred cccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhCCHHHHHHHHHHHHc
Confidence 11110000 011221111 11 1121223322211 1122233 3445999999999999999999999976
Q ss_pred CC-------------CcEEEEEEeCCCC-CChHHHhccE-EEEEEcCCCH-HHHHHHHHHHHH-----------------
Q psy13354 526 PP-------------KYIKFILATTEPQ-KIPITVLSRC-IQFNLKKMLH-HDIVNNLCYILN----------------- 572 (1342)
Q Consensus 526 p~-------------~~~vlIl~t~~~~-kl~~~L~sR~-~~i~~~~l~~-~el~~~l~~~~~----------------- 572 (1342)
.. ...++|.+.|-.+ .+.+++..|+ ..+.+.++.. ++..+++.....
T Consensus 155 ~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~~~~~~~~~ 234 (334)
T PRK13407 155 GENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFMAKWGAEDM 234 (334)
T ss_pred CCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhhcccccccc
Confidence 42 3344444444323 5778999998 6777777665 554445443211
Q ss_pred ------------hcCCCcchhHHHHHHHhc---C-CcHHHHHHHHHHHHhhc--C--CCCCHHHHHHHhccCc
Q psy13354 573 ------------KENIKFETSALNLIATGA---Q-GSMRDALSLTDQAINYS--S--EKITLNSMQEMLSIID 625 (1342)
Q Consensus 573 ------------~~g~~i~~~al~~La~~~---~-g~lr~a~~~L~kl~~~~--~--~~It~e~V~~~v~~~~ 625 (1342)
-..+.++++.++++++.+ + .++|..+.++.-+..++ . ..|+.+||+++.....
T Consensus 235 ~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~vl 307 (334)
T PRK13407 235 QLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMAL 307 (334)
T ss_pred CCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHhh
Confidence 134678888888887753 3 47777777665544443 2 3499999987774433
No 463
>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]
Probab=99.17 E-value=1.4e-09 Score=130.12 Aligned_cols=263 Identities=19% Similarity=0.249 Sum_probs=172.5
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--C---
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--K--- 149 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~--- 149 (1342)
..++.+..++.+|+++..+.++|.|.||..++++++.+||.|+ +..++|-|....+-..|. .++++... +
T Consensus 72 i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~~~~GD~VL---vdRN~HKSi~~glilaGa--~Pvyl~p~~np~~g 146 (557)
T COG1982 72 IKEAQELAARVFGADHTYFVVNGTSTANKAVINAVLTPGDKVL---VDRNCHKSIHHGLILAGA--TPVYLEPSRNPLYG 146 (557)
T ss_pred HHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhhcCCCCEEE---ecCCccHHHHHHHHHcCC--ceEEecCCCCcccc
Confidence 3446669999999999999886777799999999999999999 555777776666666676 55554432 3
Q ss_pred -CCCCCHHHHHHHHHhcCC--eEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC-CC-CCCcEE
Q psy13354 150 -KEKIDYKKVEYLAKKNKP--KLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN-PV-PFADFI 223 (1342)
Q Consensus 150 -~~~id~e~Le~~i~~~~~--~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~-~l-~~~Div 223 (1342)
-+.++.+.+.+.+.++.. +++++.+++|- ...++++|.+.++.+++|+.+|++|..-.......+. .. ..+|++
T Consensus 147 i~ggI~~~~~~~~l~~~~~~~k~~vitnpTYdGv~~n~~~i~~~~~~~~a~v~~deah~~~~~~~~~l~~~~~~~~~~~~ 226 (557)
T COG1982 147 IIGGIPLETFKEALLAHPDAEKLAVITNPTYDGVCYNLRKIVELLHHYGAWVLYDEAHPAHFDFSPMLPESALNGGADFV 226 (557)
T ss_pred ccCCCCHHHHHHHHHhChhhheeEEEecCccceEeecHHHHHHHHhhcCceEEhhhcCcccccccccCcchhhhcCceEE
Confidence 256899999987766432 45555555555 5559999999999999999999998753322222222 11 236899
Q ss_pred EecCCccCCCCCe-eEEEEec--h-hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHH----HHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG-GFILMKK--K-YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIY----QKQVVKNAKIL 295 (1342)
Q Consensus 224 v~S~sK~l~gp~G-G~iv~~~--~-l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~----~~~l~~~a~~l 295 (1342)
+.|.||.+++..- .++-.++ . -.+++......+..++|..+..+++-.| ........+.. .+...+.++.+
T Consensus 227 tqS~HK~l~alSQaS~iHv~~~~~~~~~r~nea~~~h~STSPsY~l~ASlD~A-r~~~~~~G~~l~~~~~~~~i~~r~~~ 305 (557)
T COG1982 227 TQSTHKLLAALSQASMIHVKDGRAVNHERFNEALMMHQSTSPSYPLMASLDVA-RMQEGNAGRELWQEVIDEAIDFRKAL 305 (557)
T ss_pred EechhhhhhhhhhhHHHhhCCCccCCHHHHHHHHHHHccCCchHHHHHHHHHH-HHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 9999999966544 5555553 1 1233443323334455666666666553 33322233333 45556666666
Q ss_pred HHHHHhCC-cEEeeCCC--------------------CCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 296 SKILDQRG-IRIVSGGT--------------------KSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 296 ~~~L~~~g-~~~~~~~~--------------------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
++...+.+ |++..++. +-.-+.+.+++.+.+...+..+|+++||....
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp~~Gipg~~v~~~L~e~gii~e~ 374 (557)
T COG1982 306 RRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTPEFGIPGAIVAKYLREHGIIPEE 374 (557)
T ss_pred HHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecCCCCCcHHHHHHHHHHcCCeeee
Confidence 66666654 55544221 11124455667888889999999888988764
No 464
>KOG2004|consensus
Probab=99.16 E-value=1.2e-10 Score=138.51 Aligned_cols=179 Identities=21% Similarity=0.299 Sum_probs=124.3
Q ss_pred cccccchhhHHHHHHHHHcCC-----CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccC
Q psy13354 391 NTLIGQNHISKSLINALDKKR-----LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNG 465 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~~-----~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 465 (1342)
+|..|.+++++.+.+.|.-++ -+..++|+||||+|||++++.||+.|+.. ++.++-|
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRk------------------FfRfSvG 472 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRK------------------FFRFSVG 472 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCc------------------eEEEecc
Confidence 678999999999999886443 34689999999999999999999999842 1222223
Q ss_pred CCccEEEEccCCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCCH----HHHHHHHHhhcC-------------C-
Q psy13354 466 CFMDYIEMDAASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLTH----HAFNAMLKTLEE-------------P- 526 (1342)
Q Consensus 466 ~~~d~~~i~~~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~~----~~~~~Ll~~Le~-------------p- 526 (1342)
--.|+.++.+...+.+.. -..+++.+... .-...+++|||+|++.. +-..+||..|+- |
T Consensus 473 G~tDvAeIkGHRRTYVGAMPGkiIq~LK~v--~t~NPliLiDEvDKlG~g~qGDPasALLElLDPEQNanFlDHYLdVp~ 550 (906)
T KOG2004|consen 473 GMTDVAEIKGHRRTYVGAMPGKIIQCLKKV--KTENPLILIDEVDKLGSGHQGDPASALLELLDPEQNANFLDHYLDVPV 550 (906)
T ss_pred ccccHHhhcccceeeeccCChHHHHHHHhh--CCCCceEEeehhhhhCCCCCCChHHHHHHhcChhhccchhhhcccccc
Confidence 223444444433333322 11233333222 12345999999999963 235677776652 2
Q ss_pred -CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----------cCCCcchhHHHHHHHh
Q psy13354 527 -PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----------ENIKFETSALNLIATG 589 (1342)
Q Consensus 527 -~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----------~g~~i~~~al~~La~~ 589 (1342)
-+.++||+++|..+.++++|++|..+++++.+..+|-.++..+++-. +.++|+++++..|.++
T Consensus 551 DLSkVLFicTAN~idtIP~pLlDRMEvIelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~ 624 (906)
T KOG2004|consen 551 DLSKVLFICTANVIDTIPPPLLDRMEVIELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIER 624 (906)
T ss_pred chhheEEEEeccccccCChhhhhhhheeeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHH
Confidence 24789999999999999999999999999999999988887776543 2345777776666553
No 465
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.16 E-value=4.9e-10 Score=146.31 Aligned_cols=197 Identities=19% Similarity=0.264 Sum_probs=130.8
Q ss_pred cccccchhhHHHHHHHHHcC--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDKK--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+.++||+++++.+.+++... +..+++||+||+|+|||++|+.+|+.+.+.. .+|..|..+.-.
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~---------~~~~~~d~s~~~ 579 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSE---------DAMIRLDMSEYM 579 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCc---------cceEEEEchhcc
Confidence 56899999999999998632 2235799999999999999999999997531 111111111000
Q ss_pred ccCCCccEEEEccC--CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-----------CCc
Q psy13354 463 DNGCFMDYIEMDAA--STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-----------PKY 529 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~--~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-----------~~~ 529 (1342)
.. +. +..+-++ ...+.++...+.+.+...| ++||++||++++..+.++.|++.+|+. -.+
T Consensus 580 ~~--~~-~~~l~g~~~gyvg~~~~~~l~~~~~~~p----~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~ 652 (821)
T CHL00095 580 EK--HT-VSKLIGSPPGYVGYNEGGQLTEAVRKKP----YTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKN 652 (821)
T ss_pred cc--cc-HHHhcCCCCcccCcCccchHHHHHHhCC----CeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCc
Confidence 00 00 0000000 1111222233444444444 479999999999999999999999974 257
Q ss_pred EEEEEEeCCCC-------------------------------------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHH
Q psy13354 530 IKFILATTEPQ-------------------------------------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYIL 571 (1342)
Q Consensus 530 ~vlIl~t~~~~-------------------------------------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~ 571 (1342)
+++|+++|--. .+.|.+.+|+ .++.|.|++.+++.+++...+
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l 732 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIML 732 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHH
Confidence 88999876311 0224688998 899999999999999988776
Q ss_pred Hh-------cC--CCcchhHHHHHHHhc---CCcHHHHHHHHHH
Q psy13354 572 NK-------EN--IKFETSALNLIATGA---QGSMRDALSLTDQ 603 (1342)
Q Consensus 572 ~~-------~g--~~i~~~al~~La~~~---~g~lr~a~~~L~k 603 (1342)
.+ .| +.+++++.++|++.. ....|-+.+.+++
T Consensus 733 ~~l~~rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~ 776 (821)
T CHL00095 733 KNLFKRLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMR 776 (821)
T ss_pred HHHHHHHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHH
Confidence 64 33 468999999999963 2345555555544
No 466
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=99.16 E-value=4.6e-09 Score=127.63 Aligned_cols=308 Identities=13% Similarity=0.063 Sum_probs=167.3
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHcc-CCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVL-NPG 113 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~-~pG 113 (1342)
..-.|.+.+++.+.+.. .. +..... ... +...++.+++.+..... ..++|.+||++|++.+++... -+|
T Consensus 55 Gh~~p~v~~ai~~ql~~-~~--~~~~~~-~~~----~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tg 126 (421)
T PRK09792 55 GHRHPDLVAAVEQQLQQ-FT--HTAYQI-VPY----ESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHTG 126 (421)
T ss_pred CCCCHHHHHHHHHHHHh-cc--CcccCc-cCC----HHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhcC
Confidence 45677799998888753 21 111111 112 22334555677776422 355566699999999998762 223
Q ss_pred -CEEEEeeccCCccchhhHHhh------hCC-----ceeEEEEecCCCCCC---CCHHHHHHHHHh----cCCeEEEEcC
Q psy13354 114 -DTIMGMSLQEGGHLTHGMMLN------MSG-----KWFNSICYGLNKKEK---IDYKKVEYLAKK----NKPKLIIAGA 174 (1342)
Q Consensus 114 -D~Vlv~~~~~~~~~s~~~~~~------~~g-----~~~~~v~~~~~~~~~---id~e~Le~~i~~----~~~~liv~~~ 174 (1342)
.+|+...-.|.++......+. ..+ ..+..++++.+.++. -+++.+++.+.. .+.+.+++.+
T Consensus 127 r~~ii~~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EP 206 (421)
T PRK09792 127 RPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEP 206 (421)
T ss_pred CCeEEEECCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEcc
Confidence 467765544433321111110 001 112333443322221 134677777763 3456777755
Q ss_pred CCCC------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CC-CCCcEEEecCCccCCCC-CeeEEEEech
Q psy13354 175 SAYS------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PV-PFADFITSTTHKSLRGP-RGGFILMKKK 244 (1342)
Q Consensus 175 s~~~------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l-~~~Divv~S~sK~l~gp-~GG~iv~~~~ 244 (1342)
...+ ....+++|.++|++||+++|+||++..... .+.... .+ ..+|+ .+++|++++. +-|+++++++
T Consensus 207 vq~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr-~G~~~a~~~~~~~pDi--~t~gK~l~~G~pigav~~~~~ 283 (421)
T PRK09792 207 VQGEGGFNVAPKELVAAIRRLCDEHGIVMIADEVQSGFAR-TGKLFAMDHYADKPDL--MTMAKSLAGGMPLSGVVGNAN 283 (421)
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCC-CCchhHHHhcCCCCcE--EEeehhhcCCCceEEEEEcHH
Confidence 3222 222499999999999999999999863211 222111 11 13575 4667999432 2299999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCC-CeEEEEEcc
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTK-SHIILVDLR 321 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~-~~~v~i~~~ 321 (1342)
+++.+.......++++ +|..++++.+..+.+.+. +..+++.+..+++.+.|+.+ .++.+....+ +.++|+.+.
T Consensus 284 i~~~~~~~~~~~T~~g--npl~~aaa~a~l~~l~~~--~~~~~~~~~g~~l~~~l~~l~~~~p~v~~vrG~Gl~~~ie~~ 359 (421)
T PRK09792 284 IMDAPAPGGLGGTYAG--NPLAVAAAHAVLNIIDKE--SLCERANQLGQRLKNTLIDAKESVPAIAAVRGLGSMIAAEFN 359 (421)
T ss_pred HHhccCCCCcCCCCCC--CHHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHHhCCCcceecccceEEEEEec
Confidence 8887765433334433 455566666666665422 34455556666666666542 1221122233 678888886
Q ss_pred CCC-------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 322 NKK-------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 322 ~~~-------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.. ....+...+++ +||++.+. + +. ...+|+..+...+
T Consensus 360 ~~~~~~~~~~~~~~l~~~~~~-~Gv~i~~~---g-~~----~~~irl~P~l~i~ 404 (421)
T PRK09792 360 DPQTGEPSAAIAQKIQQRALA-QGLLLLTC---G-AY----GNVIRFLYPLTIP 404 (421)
T ss_pred CCccCCcchHHHHHHHHHHHH-CCcEEeec---C-CC----CCEEEEeCCCcCC
Confidence 431 12345555555 59998521 1 10 2468987766444
No 467
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.15 E-value=4e-10 Score=143.34 Aligned_cols=193 Identities=16% Similarity=0.255 Sum_probs=126.3
Q ss_pred cccccchhhHHHHHHHHHc--------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC---cch
Q psy13354 391 NTLIGQNHISKSLINALDK--------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC---SVC 459 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~--------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~---~~~ 459 (1342)
..++||+++++.+.+++.. +++...+||+||+|+|||++|+.+|+.+++.- ....|... +.+
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~-------i~id~se~~~~~~~ 530 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIEL-------LRFDMSEYMERHTV 530 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCc-------EEeechhhcccccH
Confidence 3589999999999999863 23334699999999999999999999986321 01111111 011
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------C
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-----------K 528 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-----------~ 528 (1342)
..+. +..+.++.. +.-..+.+.....| +.||++||++++..+.++.|++.|++.. .
T Consensus 531 ~~Li-G~~~gyvg~--------~~~g~L~~~v~~~p----~sVlllDEieka~~~v~~~LLq~ld~G~ltd~~g~~vd~r 597 (758)
T PRK11034 531 SRLI-GAPPGYVGF--------DQGGLLTDAVIKHP----HAVLLLDEIEKAHPDVFNLLLQVMDNGTLTDNNGRKADFR 597 (758)
T ss_pred HHHc-CCCCCcccc--------cccchHHHHHHhCC----CcEEEeccHhhhhHHHHHHHHHHHhcCeeecCCCceecCC
Confidence 1110 111111111 11111222222233 4699999999999999999999998641 4
Q ss_pred cEEEEEEeCCC-------------------------CCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHh-------cC
Q psy13354 529 YIKFILATTEP-------------------------QKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNK-------EN 575 (1342)
Q Consensus 529 ~~vlIl~t~~~-------------------------~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~-------~g 575 (1342)
++++|+++|.- ..+.|.+..|+ .++.|.+++.+++.+++...+.+ .|
T Consensus 598 n~iiI~TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~ 677 (758)
T PRK11034 598 NVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKG 677 (758)
T ss_pred CcEEEEeCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence 67789988721 12447888998 69999999999999988766542 34
Q ss_pred --CCcchhHHHHHHHhc---CCcHHHHHHHHHH
Q psy13354 576 --IKFETSALNLIATGA---QGSMRDALSLTDQ 603 (1342)
Q Consensus 576 --~~i~~~al~~La~~~---~g~lr~a~~~L~k 603 (1342)
+.++++++++|++.. ....|-+.+.+++
T Consensus 678 i~l~~~~~~~~~l~~~~~~~~~GAR~l~r~i~~ 710 (758)
T PRK11034 678 VSLEVSQEARDWLAEKGYDRAMGARPMARVIQD 710 (758)
T ss_pred CCceECHHHHHHHHHhCCCCCCCCchHHHHHHH
Confidence 468899999999753 2344555555444
No 468
>PRK05367 glycine dehydrogenase; Provisional
Probab=99.15 E-value=4.7e-09 Score=136.73 Aligned_cols=270 Identities=13% Similarity=0.074 Sum_probs=171.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc-cCCC--CEEEEeeccCCccchhhHH-hhhCCceeE
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV-LNPG--DTIMGMSLQEGGHLTHGMM-LNMSGKWFN 141 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al-~~pG--D~Vlv~~~~~~~~~s~~~~-~~~~g~~~~ 141 (1342)
.++..+.....+..+++++|.+ ++.++. ++|++.+++++++ ..++ |+|++++..||.....+.. .+..|+.+.
T Consensus 116 sQG~Leal~~~Qt~la~LtG~~~anaSl~d-~aTAa~ea~~~a~~~~~~~~~~vlv~~~~hP~~~~v~~t~a~~~G~ev~ 194 (954)
T PRK05367 116 SQGRLEALLNFQTMVADLTGLEIANASLLD-EATAAAEAMALAKRVSKSKSNRFFVDDDVHPQTLDVLRTRAEPLGIEVV 194 (954)
T ss_pred HHHHHHHHHHHHHHHHHHHCCChhhccccc-cHHHHHHHHHHhhhhccCCCCEEEEcCccCHHHHHHHHHHHHhCCCEEE
Confidence 3444455555777999999998 345555 8888888888776 4554 8999888888776555433 355677555
Q ss_pred EEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-C
Q psy13354 142 SICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-F 219 (1342)
Q Consensus 142 ~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~ 219 (1342)
.+ +.+++. + ......++++.+++. ...|+++|+++||++|+++++|..+....... .+-+ .
T Consensus 195 ~~--~~~~d~--~---------~~~~~~vlvq~p~~~G~i~d~~~i~~~ah~~Gal~~vda~~~Al~~l~----~pge~G 257 (954)
T PRK05367 195 VG--DAAKAL--D---------HDDVFGVLLQYPGTSGEVRDYTALIAAAHARGALVAVAADLLALTLLT----PPGEMG 257 (954)
T ss_pred Ee--cCccCC--C---------cccEEEEEEecCCCCeeeccHHHHHHHHHHcCCEEEEEehhhhccCCC----ChhhcC
Confidence 44 443221 1 123344555555555 55599999999999999999998764333211 1222 4
Q ss_pred CcEEEecCCcc-----CCCCCeeEEEEechhHHHHhhccCCc-----------------------cccCCcHHH---HHH
Q psy13354 220 ADFITSTTHKS-----LRGPRGGFILMKKKYKKIINSAVFPG-----------------------IQGGPLMHV---IAA 268 (1342)
Q Consensus 220 ~Divv~S~sK~-----l~gp~GG~iv~~~~l~~~l~~~~~~~-----------------------~~~~~~~~~---~~A 268 (1342)
+||++++.+|| ++||..||+++++++.+.+......+ -.++++... ..+
T Consensus 258 aDi~vgs~qkfg~P~g~GGP~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTsNict~qaL~a 337 (954)
T PRK05367 258 ADIAVGSAQRFGVPMGFGGPHAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATSNICTAQVLLA 337 (954)
T ss_pred CCEEEeeCcccCCCCCCCCCCEEEEEECHHHHhhCCCCeeeeecccCCCcccccccccccccccccccccccchHHHHHH
Confidence 89999999999 65664499999998777664221111 012222111 111
Q ss_pred HHHH--HHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccC
Q psy13354 269 KAVA--FKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSI 346 (1342)
Q Consensus 269 aa~a--l~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~ 346 (1342)
+.++ +..+...+++++.++...++.++.+.|...|+++... .....+.+.++ ....++.+++++ +||.+....
T Consensus 338 ~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~~~~~-~~f~~~~~~~~--~~~~~i~~~l~~-~gi~~~~~~- 412 (954)
T PRK05367 338 VMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLEVVHD-SFFDTLTVEVG--GDAAAVLARALA-AGINLRRVD- 412 (954)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcccCCC-CCCCeEEEeCC--CCHHHHHHHHHH-CCceecccc-
Confidence 1111 1223455788889999999999999998888887542 22234445543 234556666655 599884321
Q ss_pred CCCCCCccccccccccccccccc
Q psy13354 347 PNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 347 p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+.+|++++..+|.
T Consensus 413 ---------~~~l~is~~e~~t~ 426 (954)
T PRK05367 413 ---------DDHVGISLDETTTR 426 (954)
T ss_pred ---------CCEEEEEecccCCH
Confidence 23599999998774
No 469
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=99.15 E-value=4.5e-09 Score=126.55 Aligned_cols=295 Identities=16% Similarity=0.094 Sum_probs=164.8
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc------CC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL------NP 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~------~p 112 (1342)
-.|.+.+++.+.+. +...+.. . ...+.+.++.+++.+..+.+. +++++||++|++.++..+. ++
T Consensus 53 ~~p~v~~a~~~q~~-~~~~~~~--~------~~~~~~~~la~~l~~~~~~~~-v~f~~SGseA~e~Aik~ar~~~~~~~~ 122 (395)
T PRK03715 53 CNPGMVEALAAQAE-KLINPSP--A------FYNEPMAKLAGLLTQHSCFDK-VFFANSGAEANEGAIKLARKWGRKHKN 122 (395)
T ss_pred CCHHHHHHHHHHHH-hcccccc--c------ccCHHHHHHHHHHhhccCCCE-EEEeCCcHHHHHHHHHHHHHHhhccCC
Confidence 45779999888874 2221111 1 112455656667776655444 4555599999999998874 12
Q ss_pred C-CEEEEeeccCCccchhhHHhhhCCce-eEEEEecCCCCC----CCCHHHHHHHHHhcCCeEEEEcCCCCC-------c
Q psy13354 113 G-DTIMGMSLQEGGHLTHGMMLNMSGKW-FNSICYGLNKKE----KIDYKKVEYLAKKNKPKLIIAGASAYS-------Q 179 (1342)
Q Consensus 113 G-D~Vlv~~~~~~~~~s~~~~~~~~g~~-~~~v~~~~~~~~----~id~e~Le~~i~~~~~~liv~~~s~~~-------~ 179 (1342)
| ++|++....+.+.... .+...+.. .+....+....+ ..|++++++.+.+ ..++|++.+ ..+ .
T Consensus 123 ~r~~ii~~~~~yHG~t~~--~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~aavi~Ep-v~~~gG~~~~~ 198 (395)
T PRK03715 123 GAYEIITFDHSFHGRTLA--TMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLITD-KTVAVMLEP-VQGEGGVIPAT 198 (395)
T ss_pred CCcEEEEECCCcCCChHH--HHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcCC-CceEEEEeC-CcCCCCCccCC
Confidence 3 4666655443333211 11222210 000000100000 1378888888864 455566644 222 1
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhhccCC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~ 255 (1342)
...+++|.++|++||+++|+||+|. |+...+... ..+. .+|+++ ++|.+++. +.|++++++++.. +......
T Consensus 199 ~~~l~~l~~l~~~~~~llI~DEv~t-G~GRtG~~~a~~~~gv~PDi~t--~gK~lg~G~p~~av~~~~~i~~-~~~~~~~ 274 (395)
T PRK03715 199 REFMQQLRALTKQHGLLLIVDEVQT-GCGRTGTLFAYELSGIEPDIMT--LGKGIGGGVPLAALLAKAEVAV-FEAGDQG 274 (395)
T ss_pred HHHHHHHHHHHHHcCCEEEEecccc-CCCCCcchhhHhhcCCCCceee--ehhhhhCCcceEEEEEcccccc-ccCCCcC
Confidence 2239999999999999999999987 421122211 1111 258764 56999552 3377788887753 2221122
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
.+++ .+|..++++.+.++.+.+ +++.++..++.+++.+.|++. ++..+. ..+.++.+.+... ....+.
T Consensus 275 ~T~~--g~pl~~aaala~L~~l~~--~~l~~~~~~~g~~l~~~L~~l~~~~~i~~vr--G~Glm~~i~l~~~--~~~~~~ 346 (395)
T PRK03715 275 GTYN--GNPLMTAVGVAVISQLLA--PGFLEGVRARGEYLKEKLLELSEERGLEGER--GEGLLRALLLGKD--IGPQIV 346 (395)
T ss_pred CCCC--CCHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHhhcCCcCeEE--cceeEEEEEecCc--hHHHHH
Confidence 2333 246677777777776642 346788888888998888763 433222 2356677777542 122233
Q ss_pred HHHHHC---CceeeeccCCCCCCCccccccccccccccccc
Q psy13354 332 SILESA---NIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 332 ~ll~~~---GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
..+.+. ||++.+.. ...+|++.+..+|.
T Consensus 347 ~~~~~~~~~Gi~~~~~~----------~~~lR~~p~l~~t~ 377 (395)
T PRK03715 347 EKARDMQPDGLLLNAPR----------PNLLRFMPALNVTT 377 (395)
T ss_pred HHHHhccCCCEEEeecC----------CCEEEEeCCcccCH
Confidence 333344 99886421 13589988887664
No 470
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=7.7e-10 Score=133.11 Aligned_cols=193 Identities=19% Similarity=0.269 Sum_probs=132.8
Q ss_pred cccccchhhHHHHHHHHH-----cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccC
Q psy13354 391 NTLIGQNHISKSLINALD-----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNG 465 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~-----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~ 465 (1342)
.|..|.+.+++.+.+-+. ++.-++.++|.||||+|||++++.||+.++.. +..++-|
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~Rk------------------fvR~sLG 384 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRK------------------FVRISLG 384 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCC------------------EEEEecC
Confidence 568899999998877763 33445789999999999999999999999842 1111111
Q ss_pred CCccEEEEccCCCcCHH----HHHHHHHHHhhcCccCCceEEEeccCccCCHH----HHHHHHHhhcC------------
Q psy13354 466 CFMDYIEMDAASTRGIN----EMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----AFNAMLKTLEE------------ 525 (1342)
Q Consensus 466 ~~~d~~~i~~~~~~~~~----~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----~~~~Ll~~Le~------------ 525 (1342)
---|-.++.+...+.+. .+-+-+..+.. ...|+++||+|+++.+ -..+||..|+-
T Consensus 385 GvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~-----~NPv~LLDEIDKm~ss~rGDPaSALLEVLDPEQN~~F~DhYLe 459 (782)
T COG0466 385 GVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGV-----KNPVFLLDEIDKMGSSFRGDPASALLEVLDPEQNNTFSDHYLE 459 (782)
T ss_pred ccccHHHhccccccccccCChHHHHHHHHhCC-----cCCeEEeechhhccCCCCCChHHHHHhhcCHhhcCchhhcccc
Confidence 11122222222222222 22222222222 2349999999999643 45788877752
Q ss_pred -C--CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHH-----hcC-----CCcchhHHHHHHHhc--
Q psy13354 526 -P--PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILN-----KEN-----IKFETSALNLIATGA-- 590 (1342)
Q Consensus 526 -p--~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~-----~~g-----~~i~~~al~~La~~~-- 590 (1342)
| -+++.||.++|..+.++.+|++|..+++++.++++|-.++.++++- .+| +.++++++..|.+.-
T Consensus 460 v~yDLS~VmFiaTANsl~tIP~PLlDRMEiI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTR 539 (782)
T COG0466 460 VPYDLSKVMFIATANSLDTIPAPLLDRMEVIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTR 539 (782)
T ss_pred CccchhheEEEeecCccccCChHHhcceeeeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhH
Confidence 1 2578999999999999999999999999999999999888777653 334 469999999998863
Q ss_pred CCcHHHHHHHHHHHHh
Q psy13354 591 QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 591 ~g~lr~a~~~L~kl~~ 606 (1342)
+.-.|.+...+.+++.
T Consensus 540 EAGVR~LeR~i~ki~R 555 (782)
T COG0466 540 EAGVRNLEREIAKICR 555 (782)
T ss_pred hhhhhHHHHHHHHHHH
Confidence 4566666666666553
No 471
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=99.14 E-value=1.1e-08 Score=124.48 Aligned_cols=307 Identities=13% Similarity=0.114 Sum_probs=159.7
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CCCce-EecCCHHHHHHHHHHHcc-
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AEAAN-VQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~~~v-i~~~sGs~A~~~al~al~- 110 (1342)
.+-.|.+.+++.+.+.. .. +.....+ .. +....+.+++.+.+. .+..+ ++++||++|++.+++...
T Consensus 54 Gh~~p~v~~ai~~ql~~-~~--~~~~~~~-~~----~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~ 125 (425)
T PRK09264 54 GHNNPVLKQALIDYLQR-DG--ITHGLDM-HT----TAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARK 125 (425)
T ss_pred CCCCHHHHHHHHHHHHh-cc--ccccccc-Cc----HHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHH
Confidence 45667799999888753 11 1111111 12 223334456666542 22234 445699999999998762
Q ss_pred -CCCCEEEEeeccCCccchhhHHhh-----hC--C---ceeEEEEecCCCCCC-CCHHHHHHHHHhc-----CCeEEEEc
Q psy13354 111 -NPGDTIMGMSLQEGGHLTHGMMLN-----MS--G---KWFNSICYGLNKKEK-IDYKKVEYLAKKN-----KPKLIIAG 173 (1342)
Q Consensus 111 -~pGD~Vlv~~~~~~~~~s~~~~~~-----~~--g---~~~~~v~~~~~~~~~-id~e~Le~~i~~~-----~~~liv~~ 173 (1342)
....+|+...-.|.++-.....+. .. + ..+..++++...... -|++++++.+.+. ..+.|++.
T Consensus 126 ~tgr~~ii~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~E 205 (425)
T PRK09264 126 VTGRTNIVAFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVE 205 (425)
T ss_pred hcCCCeEEEECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEe
Confidence 223567765444433321111110 00 1 112333332110000 1667788877642 23455553
Q ss_pred CCCCC-------cccCHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe---eEEEE
Q psy13354 174 ASAYS-------QYIDFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG---GFILM 241 (1342)
Q Consensus 174 ~s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G---G~iv~ 241 (1342)
+ ..+ ....+++|.++|++||+++|+||+|. +|..+......... .+|+++ ++|.+ ++.| |++++
T Consensus 206 p-v~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t--~~K~l-~~~G~pigav~~ 281 (425)
T PRK09264 206 T-VQGEGGINVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVT--LSKSI-SGYGLPMALVLI 281 (425)
T ss_pred c-ccCCCCCcCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEE--ecccc-CCCccceEEEEE
Confidence 3 222 33479999999999999999999985 22111100001111 258764 46999 5434 88898
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHH-HhccchHHHHHHHHHHHHHHHHHHHHhC--CcE--EeeCCCCCeEE
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFK-EVLKPDFKIYQKQVVKNAKILSKILDQR--GIR--IVSGGTKSHII 316 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~-~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~--~~~~~~~~~~v 316 (1342)
++++ ..+.......++++ +|..++++.+.. +... -.++.+++.++.+++.+.|.++ .++ +......+.+.
T Consensus 282 ~~~i-~~~~~~~~~~T~~g--np~~~aaa~a~l~~~~~--~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~ 356 (425)
T PRK09264 282 KPEL-DVWKPGEHNGTFRG--NNLAFVTATAALEEYWS--DDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQ 356 (425)
T ss_pred chhh-hccCCCccCCCCCC--CHHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEE
Confidence 8876 33332222223332 233333443333 4332 1245677777888888877653 121 11112235677
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++.+.+......+...+++ +||.+.+.... ..++|++.+..++.
T Consensus 357 ~i~l~~~~~~~~l~~~~~~-~Gv~~~~~~~~--------~~~lr~~p~l~~t~ 400 (425)
T PRK09264 357 GIDFGDGELAGKIAAEAFE-NGLIIETSGPE--------DEVVKLLPPLTIDE 400 (425)
T ss_pred EEEecChHHHHHHHHHHHH-CCCEEeccCCC--------CCEEEEeCCCCCCH
Confidence 8887654333455555555 59998753111 24688887766553
No 472
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.14 E-value=4.4e-10 Score=127.47 Aligned_cols=152 Identities=11% Similarity=0.140 Sum_probs=113.5
Q ss_pred CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC------CcCHHH
Q psy13354 410 KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINE 483 (1342)
Q Consensus 410 ~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~ 483 (1342)
-+.|..++||||||||||.+|+++++++++ .++.+++++ ..+...
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~-----------------------------~~i~vsa~eL~sk~vGEsEk~ 195 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGI-----------------------------EPIVMSAGELESENAGEPGKL 195 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCC-----------------------------CeEEEEHHHhhcCcCCcHHHH
Confidence 367789999999999999999999999974 355665532 223356
Q ss_pred HHHHHHHHhhcC-ccCCceEEEeccCccCCH-----------HH-HHHHHHhhcCC--------------CCcEEEEEEe
Q psy13354 484 MAQLLEQTIYAP-INARYKIYVIDEVHMLTH-----------HA-FNAMLKTLEEP--------------PKYIKFILAT 536 (1342)
Q Consensus 484 i~~ii~~~~~~p-~~~~~rvviIDE~~~L~~-----------~~-~~~Ll~~Le~p--------------~~~~vlIl~t 536 (1342)
+++++..+.... ..+..-||+|||+|.+.. .. ...|+..+++| ...+.+|.++
T Consensus 196 IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTT 275 (413)
T PLN00020 196 IRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTG 275 (413)
T ss_pred HHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeC
Confidence 888888776432 234567999999997621 11 24677766643 3567888899
Q ss_pred CCCCCChHHHhc--cEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCc
Q psy13354 537 TEPQKIPITVLS--RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGS 593 (1342)
Q Consensus 537 ~~~~kl~~~L~s--R~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~ 593 (1342)
|+++.++++|++ |+..+ +..|+.++..++++.+++..++ +.+.+..|+....|-
T Consensus 276 Nrpd~LDpALlRpGRfDk~-i~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq 331 (413)
T PLN00020 276 NDFSTLYAPLIRDGRMEKF-YWAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQ 331 (413)
T ss_pred CCcccCCHhHcCCCCCCce-eCCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCC
Confidence 999999999998 77443 4689999999999998888764 577788888877664
No 473
>KOG0737|consensus
Probab=99.14 E-value=6e-10 Score=125.05 Aligned_cols=187 Identities=24% Similarity=0.305 Sum_probs=131.8
Q ss_pred CccccccchhhHHHHHHHHH----------cC---CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 389 NFNTLIGQNHISKSLINALD----------KK---RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~----------~~---~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+|+|+-|.+.+++.|.+.+- .+ +.+.++|+|||||||||.+|+++|++..+
T Consensus 90 ~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga---------------- 153 (386)
T KOG0737|consen 90 SFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGA---------------- 153 (386)
T ss_pred ehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCC----------------
Confidence 67777777777777766652 12 34568999999999999999999999874
Q ss_pred CcchhhhccCCCccEEEEccCCCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccCC-------HHHH----H---HH
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTR--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-------HHAF----N---AM 519 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-------~~~~----~---~L 519 (1342)
.|+.+..+... .-.+-..++....+.|..=.+.+++|||++.+- .++. + .+
T Consensus 154 -------------~fInv~~s~lt~KWfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~ 220 (386)
T KOG0737|consen 154 -------------NFINVSVSNLTSKWFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMAL 220 (386)
T ss_pred -------------CcceeeccccchhhHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHH
Confidence 24444444322 223556666666666665667899999999663 1111 1 22
Q ss_pred HHhhcC-CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCC-cHHH
Q psy13354 520 LKTLEE-PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQG-SMRD 596 (1342)
Q Consensus 520 l~~Le~-p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g-~lr~ 596 (1342)
.+=|.. ....++++.+||++..+..++.+|. .+++..-|+..+..++|+-+++.+.+. ++-.+..+++.+.| +-++
T Consensus 221 WDGl~s~~~~rVlVlgATNRP~DlDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSD 299 (386)
T KOG0737|consen 221 WDGLSSKDSERVLVLGATNRPFDLDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSD 299 (386)
T ss_pred hccccCCCCceEEEEeCCCCCccHHHHHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHH
Confidence 232333 3345656667888899999999998 889999999999999999999998876 55558889998877 4455
Q ss_pred HHHHHHHHH
Q psy13354 597 ALSLTDQAI 605 (1342)
Q Consensus 597 a~~~L~kl~ 605 (1342)
+.+++..++
T Consensus 300 LkelC~~Aa 308 (386)
T KOG0737|consen 300 LKELCRLAA 308 (386)
T ss_pred HHHHHHHHh
Confidence 555554444
No 474
>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]
Probab=99.13 E-value=8.6e-09 Score=111.13 Aligned_cols=327 Identities=15% Similarity=0.100 Sum_probs=182.4
Q ss_pred cCceeeeecCCCCcHHHHHHHhHHHHhccccCCCC--CCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHH-
Q psy13354 27 NNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPG--KRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQ- 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~--~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~- 100 (1342)
...+.+..++...=|++-+...+...+....+... -..|.+..+...|.+++.+.+.+.+|+. .-+..+ +||+
T Consensus 30 ~g~imLggGNPa~iPem~~~f~~~~aemla~~~~~e~~cnY~~pQG~~~li~ala~~l~~~ygwnit~~NIalT-nGSQs 108 (417)
T COG3977 30 PGAIMLGGGNPARIPEMDDYFQDLLAEMLASGKATEALCNYDGPQGKAVLIDALAKMLRREYGWNITAQNIALT-NGSQS 108 (417)
T ss_pred CCceeeCCCCcccChhHHHHHHHHHHHHHhcchHHHHHhcCCCCcchhHHHHHHHHHHHHHhCCCCccceeeec-CCccc
Confidence 34566667666666665555555444333222111 1346778888899999999999999986 444555 5555
Q ss_pred HHHHHHHHcc---CCCC--EEEE-eeccCCccchhhHHhhhCCceeEEEEecC----CC----CCCCCHHHHHHHHHhcC
Q psy13354 101 ANQAVFFSVL---NPGD--TIMG-MSLQEGGHLTHGMMLNMSGKWFNSICYGL----NK----KEKIDYKKVEYLAKKNK 166 (1342)
Q Consensus 101 A~~~al~al~---~pGD--~Vlv-~~~~~~~~~s~~~~~~~~g~~~~~v~~~~----~~----~~~id~e~Le~~i~~~~ 166 (1342)
+.+.++..+. ..|+ .|+. ..++|.++...+ .-+- .+|.+.. .+ .+.+|.+++.-. ..
T Consensus 109 ~fFYlfNlF~G~~sdG~~k~illPLaPeYiGY~d~~----l~~d--~fVs~kP~iel~~~g~FKY~vDF~~l~i~---e~ 179 (417)
T COG3977 109 AFFYLFNLFAGRRSDGTEKKILLPLAPEYIGYADAG----LEED--LFVSAKPNIELLPAGQFKYHVDFEHLHIG---ES 179 (417)
T ss_pred hHHHHHHHhcCccCCCcceeEeeccChhhccccccc----cCcc--ceeeccCCcccccccceeeccCHHHcccc---cc
Confidence 8888877773 2444 3444 233343332211 0000 1111111 11 134566666532 34
Q ss_pred CeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC----CCCCCcEEEecCCccCCCCCe-
Q psy13354 167 PKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN----PVPFADFITSTTHKSLRGPRG- 236 (1342)
Q Consensus 167 ~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~----~l~~~Divv~S~sK~l~gp~G- 236 (1342)
...|+++-|.|| +..++.+|.++|++||+++++|.||+.-+- +..+. .+..--+.++|+||. |.+|
T Consensus 180 ~g~ic~SRPtNPTGNVlTdeE~~kldalA~~~giPliIDnAYg~PFP--~iifsd~~~~w~~NiilC~SLSK~--GLPG~ 255 (417)
T COG3977 180 TGAICVSRPTNPTGNVLTDEELAKLDALARQHGIPLIIDNAYGVPFP--GIIFSDATPLWNENIILCMSLSKL--GLPGS 255 (417)
T ss_pred cceEEecCCCCCCCCcccHHHHHHHHHHhhhcCCcEEEecccCCCCC--ceecccccccCCCCEEEEeehhhc--CCCCc
Confidence 556666666655 333799999999999999999999875321 11111 111124678899997 4555
Q ss_pred --eEEEEechhHHHHhhccCCccc-cCCcHHHHHHHHHHHHHhccchHH----HHHHHHHHHHHHHHHHHHhCCcEEeeC
Q psy13354 237 --GFILMKKKYKKIINSAVFPGIQ-GGPLMHVIAAKAVAFKEVLKPDFK----IYQKQVVKNAKILSKILDQRGIRIVSG 309 (1342)
Q Consensus 237 --G~iv~~~~l~~~l~~~~~~~~~-~~~~~~~~~Aaa~al~~~l~~~~~----~~~~~l~~~a~~l~~~L~~~g~~~~~~ 309 (1342)
|.++++++++..+.+...--.. .+..-++.++-...-.+.+.-.-+ -++++.+.....++..|.+..+.+..
T Consensus 256 R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gdl~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~~~iHk- 334 (417)
T COG3977 256 RCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGDLLRLSEQVIRPFYRNRVQTTIAILRRYLPEYRCLIHK- 334 (417)
T ss_pred ceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcchHHHHHHHhhhHHHHHHHHHHHHHHHHhcCccceeeec-
Confidence 9999999999888764211111 111112222211111111110001 12333444444555555554555543
Q ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeecc--CCCCCCCc-ccccccccccccccc
Q psy13354 310 GTKSHIILVDLRNKKITGKIAESILESANIICNKNS--IPNDPEKP-YFTSGIRLGSSAITT 368 (1342)
Q Consensus 310 ~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~--~p~~~~~~-~~~~~lRi~~~~~~t 368 (1342)
|.+.-+.|+.+.+...+.+.+.+.|+..||.+.|+. +|+.+..+ -...++|+++....+
T Consensus 335 pEGAIFlWLWf~dLPItt~~LYq~LKa~Gvl~VPG~~FFpGl~~ewpH~hqC~Rmn~~~~~~ 396 (417)
T COG3977 335 PEGAIFLWLWFKDLPITTEELYQRLKARGVLMVPGHYFFPGLDKEWPHTHQCMRMNYVPEPE 396 (417)
T ss_pred CCcceeehhhhccCCCCHHHHHHHHHhCeEEEecccccCCCCCCCCCCccceEEEecCCCHH
Confidence 677788898888877777777777777799999865 34443210 012468887766433
No 475
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.13 E-value=8.9e-10 Score=143.07 Aligned_cols=199 Identities=16% Similarity=0.226 Sum_probs=134.7
Q ss_pred cccccchhhHHHHHHHHHc-------CCCC-cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDK-------KRLH-HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~-------~~~~-~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+.++||+.+++.+.+++.. ...| ..+||+||+|+|||.+|+.+++.+.... .+..+-.|..+
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~----------~~~~~~dmse~ 635 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGE----------QNLITINMSEF 635 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCC----------cceEEEeHHHh
Confidence 4689999999999888853 1222 3589999999999999999999986210 01111112111
Q ss_pred ccCCCccEEEEccCC--CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------Cc
Q psy13354 463 DNGCFMDYIEMDAAS--TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-----------KY 529 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~--~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-----------~~ 529 (1342)
..... +..+-++. ..+-+.-..+.+.+...| +.||++||++++..+.++.|++++++.. .+
T Consensus 636 ~~~~~--~~~l~g~~~gyvg~~~~g~L~~~v~~~p----~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n 709 (852)
T TIGR03345 636 QEAHT--VSRLKGSPPGYVGYGEGGVLTEAVRRKP----YSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKN 709 (852)
T ss_pred hhhhh--hccccCCCCCcccccccchHHHHHHhCC----CcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccc
Confidence 11000 00010100 011111112233333333 4699999999999999999999998764 67
Q ss_pred EEEEEEeCCC-----------C------------------CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh-------
Q psy13354 530 IKFILATTEP-----------Q------------------KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK------- 573 (1342)
Q Consensus 530 ~vlIl~t~~~-----------~------------------kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~------- 573 (1342)
+++|+++|-. . .+.+.+.+|+.++.|.+++.+++.+++...+..
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~ 789 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMTVIPYLPLDDDVLAAIVRLKLDRIARRLKE 789 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhcceeEEEeCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 8899987731 0 134688999999999999999999998876654
Q ss_pred c-C--CCcchhHHHHHHHhcCC---cHHHHHHHHHHHH
Q psy13354 574 E-N--IKFETSALNLIATGAQG---SMRDALSLTDQAI 605 (1342)
Q Consensus 574 ~-g--~~i~~~al~~La~~~~g---~lr~a~~~L~kl~ 605 (1342)
. | +.++++++++|++.+.+ ..|.+.+.+++.+
T Consensus 790 ~~gi~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i 827 (852)
T TIGR03345 790 NHGAELVYSEALVEHIVARCTEVESGARNIDAILNQTL 827 (852)
T ss_pred hcCceEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHH
Confidence 1 4 46899999999998866 7899888887643
No 476
>KOG0731|consensus
Probab=99.13 E-value=1.4e-09 Score=134.07 Aligned_cols=204 Identities=18% Similarity=0.263 Sum_probs=146.5
Q ss_pred cCCCCccccccchhhHHHHHHHHH---c--------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALD---K--------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~---~--------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
-.+..|.|+.|.+.++++|.+.++ + -++|+.+||+||||||||.+|+++|.+.+-
T Consensus 305 ~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgV-------------- 370 (774)
T KOG0731|consen 305 NTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGV-------------- 370 (774)
T ss_pred CCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCC--------------
Confidence 445789999999999998888763 2 278899999999999999999999998862
Q ss_pred CCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-------------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH------------- 514 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~------------- 514 (1342)
.|+.++++. ..+...+++++..+... .+.+|+|||+|.+...
T Consensus 371 ---------------PF~svSGSEFvE~~~g~~asrvr~lf~~ar~~----aP~iifideida~~~~r~G~~~~~~~~e~ 431 (774)
T KOG0731|consen 371 ---------------PFFSVSGSEFVEMFVGVGASRVRDLFPLARKN----APSIIFIDEIDAVGRKRGGKGTGGGQDER 431 (774)
T ss_pred ---------------ceeeechHHHHHHhcccchHHHHHHHHHhhcc----CCeEEEecccccccccccccccCCCChHH
Confidence 244444432 12234677877776543 2459999999977321
Q ss_pred --HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 515 --AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 515 --~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
..|.|+--++. ....++++.+||+++-+++++++ |+ ..+....|+..+..+++.-++++.....++..+..++
T Consensus 432 e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a 511 (774)
T KOG0731|consen 432 EQTLNQLLVEMDGFETSKGVIVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLA 511 (774)
T ss_pred HHHHHHHHHHhcCCcCCCcEEEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHH
Confidence 24555555543 33567788889999999999986 44 6788899999999999998888777765666666688
Q ss_pred HhcCCcHH-HHHHHHHHHHhhcC----CCCCHHHHHHHh
Q psy13354 588 TGAQGSMR-DALSLTDQAINYSS----EKITLNSMQEML 621 (1342)
Q Consensus 588 ~~~~g~lr-~a~~~L~kl~~~~~----~~It~e~V~~~v 621 (1342)
..+.|... ++.+++..+...+. ..|+..+++.++
T Consensus 512 ~~t~gf~gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~ 550 (774)
T KOG0731|consen 512 SLTPGFSGADLANLCNEAALLAARKGLREIGTKDLEYAI 550 (774)
T ss_pred hcCCCCcHHHHHhhhhHHHHHHHHhccCccchhhHHHHH
Confidence 88877444 45566666554432 337666666555
No 477
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=99.13 E-value=1.5e-08 Score=123.57 Aligned_cols=304 Identities=13% Similarity=0.064 Sum_probs=158.0
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHcc--CCC
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVL--NPG 113 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~--~pG 113 (1342)
+-.|.+.+++.+.+.. +. +.....+ ..+ . ..++.+.+.+..+.+ +.+++++||++|+..++.... ...
T Consensus 57 h~~~~i~~a~~~~~~~-~~--~~~~~~~-~~~---~-~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~~r 128 (425)
T PRK08088 57 HLHPKVVAAVEAQLKK-LS--HTCFQVL-AYE---P-YLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKR 128 (425)
T ss_pred CCCHHHHHHHHHHHhh-CC--Ccccccc-CCH---H-HHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHhCC
Confidence 3477788888888752 22 1111111 111 2 224555777776643 356666699999998887652 223
Q ss_pred CEEEEeeccCCccchhhHHhhh------CCc-----eeEEEEecCCCCCCCC----HHHHHHHHH----hcCCeEEEEcC
Q psy13354 114 DTIMGMSLQEGGHLTHGMMLNM------SGK-----WFNSICYGLNKKEKID----YKKVEYLAK----KNKPKLIIAGA 174 (1342)
Q Consensus 114 D~Vlv~~~~~~~~~s~~~~~~~------~g~-----~~~~v~~~~~~~~~id----~e~Le~~i~----~~~~~liv~~~ 174 (1342)
..|++....+.+.......+.. .+. .+..++++.+.++ .+ ++.+++.+. ....+.+++.+
T Consensus 129 ~~iv~~~~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~-~~~~~~~~~l~~~l~~~~~~~~~aavi~Ep 207 (425)
T PRK08088 129 SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHG-VSEDDAIASIERIFKNDAAPEDIAAIIIEP 207 (425)
T ss_pred CeEEEECCccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccC-ccHHHHHHHHHHHHHhccCCCceEEEEECc
Confidence 4455544444333222222110 010 0112223322111 12 456777775 23445666643
Q ss_pred CCCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEec
Q psy13354 175 SAYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKK 243 (1342)
Q Consensus 175 s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~ 243 (1342)
..+ ....+++|.++|++||+++|+||+|.. ....+.... ... ..| +.||||.+++. .-||+++++
T Consensus 208 -i~~~~G~~~~~~~~~~~l~~l~~~~~~~lI~Dev~~g-~g~~g~~~~~~~~~~~pd--i~s~sK~l~~G~rig~v~~~~ 283 (425)
T PRK08088 208 -VQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQTG-AGRTGTLFAMEQMGVAAD--LTTFAKSIAGGFPLAGVTGRA 283 (425)
T ss_pred -ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC-CCcCcchhHHhhcCCCCC--EEEEeccccCCCcceeeEecH
Confidence 222 333599999999999999999999873 211221111 111 135 56888999421 129999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+........+++ ++...+++.++.+.... ++..+++++..+++.+.|.+ .+......+ .+.++|+.
T Consensus 284 ~~~~~~~~~~~~~t~~~--~~~~~~a~~~~l~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~v~g-~G~~~~l~ 358 (425)
T PRK08088 284 EVMDAIAPGGLGGTYAG--NPIACAAALAVLKVFEQ--ENLLQKANALGEKLKDGLLAIAEKHPEIGDVRG-LGAMIAIE 358 (425)
T ss_pred HHHhhcCCCCCCCCCCc--CHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEec-cceEEEEE
Confidence 99988876544444433 33334444444444321 12333444444444444433 332111112 26778988
Q ss_pred ccCCC--------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 320 LRNKK--------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 320 ~~~~~--------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.... ....+...+++ +||.+.+...+ ...+|++++..++
T Consensus 359 l~~~~~~~~p~~~~~~~l~~~~~~-~Gv~~~~~~~~--------~~~iRl~~~~~~t 406 (425)
T PRK08088 359 LFEDGDHSKPNAKLTAQIVARARD-KGLILLSCGPY--------YNVLRILVPLTIE 406 (425)
T ss_pred EecCCCCCCCCHHHHHHHHHHHHh-CCCEEecCCCC--------CCEEEEECCCCcC
Confidence 84321 12345555554 59887642111 2469999886554
No 478
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.13 E-value=6.9e-10 Score=143.36 Aligned_cols=195 Identities=16% Similarity=0.250 Sum_probs=131.1
Q ss_pred cccccchhhHHHHHHHHHcC--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDKK--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
+.++||+++++.+.+++... ++.+++||+||+|+|||++|+.+++.+.+.- ....|.....+..+
T Consensus 454 ~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~-------~~~d~se~~~~~~~ 526 (731)
T TIGR02639 454 AKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHL-------ERFDMSEYMEKHTV 526 (731)
T ss_pred cceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCe-------EEEeCchhhhcccH
Confidence 45899999999999998642 2335699999999999999999999986421 00001100000000
Q ss_pred c--cCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-----------CCc
Q psy13354 463 D--NGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-----------PKY 529 (1342)
Q Consensus 463 ~--~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-----------~~~ 529 (1342)
. -+..+ ...+.+....+.+.+...| +.||++||++++..+.++.|++++++. -.+
T Consensus 527 ~~lig~~~--------gyvg~~~~~~l~~~~~~~p----~~VvllDEieka~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~ 594 (731)
T TIGR02639 527 SRLIGAPP--------GYVGFEQGGLLTEAVRKHP----HCVLLLDEIEKAHPDIYNILLQVMDYATLTDNNGRKADFRN 594 (731)
T ss_pred HHHhcCCC--------CCcccchhhHHHHHHHhCC----CeEEEEechhhcCHHHHHHHHHhhccCeeecCCCcccCCCC
Confidence 0 00001 1112223334444444444 479999999999999999999999864 135
Q ss_pred EEEEEEeCCCC-------------------------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHh-------cC-
Q psy13354 530 IKFILATTEPQ-------------------------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNK-------EN- 575 (1342)
Q Consensus 530 ~vlIl~t~~~~-------------------------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~-------~g- 575 (1342)
+++|+++|--. .+.+.+.+|+ .++.|.|++.+++.+++...+++ .|
T Consensus 595 ~iii~Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~ 674 (731)
T TIGR02639 595 VILIMTSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNI 674 (731)
T ss_pred CEEEECCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77888776421 2356788898 79999999999999999887763 22
Q ss_pred -CCcchhHHHHHHHhc---CCcHHHHHHHHHHH
Q psy13354 576 -IKFETSALNLIATGA---QGSMRDALSLTDQA 604 (1342)
Q Consensus 576 -~~i~~~al~~La~~~---~g~lr~a~~~L~kl 604 (1342)
+.++++++++|++.. ....|.+.+.+++.
T Consensus 675 ~l~i~~~a~~~La~~~~~~~~GaR~l~r~i~~~ 707 (731)
T TIGR02639 675 KLELTDDAKKYLAEKGYDEEFGARPLARVIQEE 707 (731)
T ss_pred eEEeCHHHHHHHHHhCCCcccCchHHHHHHHHH
Confidence 578999999999863 34566666655543
No 479
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.12 E-value=1.5e-09 Score=141.86 Aligned_cols=202 Identities=23% Similarity=0.247 Sum_probs=145.6
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
|.++-+...|+.++|++..++.+.+.+......+ ++|+||||+|||++++.+|+.+..... |
T Consensus 169 l~~~a~~~~~~~~igr~~ei~~~~~~L~r~~~~n-~lL~G~pGvGKTal~~~la~~i~~~~v---------p-------- 230 (821)
T CHL00095 169 LTKEAIDGNLDPVIGREKEIERVIQILGRRTKNN-PILIGEPGVGKTAIAEGLAQRIVNRDV---------P-------- 230 (821)
T ss_pred HHHHHHcCCCCCCCCcHHHHHHHHHHHcccccCC-eEEECCCCCCHHHHHHHHHHHHHhCCC---------C--------
Confidence 4444556678899999999999999998776655 699999999999999999999852110 0
Q ss_pred hhccCCCccEEEEccC------CCcC--HHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------HHHHHHHHhhc
Q psy13354 461 KIDNGCFMDYIEMDAA------STRG--INEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------HAFNAMLKTLE 524 (1342)
Q Consensus 461 ~~~~~~~~d~~~i~~~------~~~~--~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------~~~~~Ll~~Le 524 (1342)
.......+++++.+ ...+ .+.+..+++++.. .+..|++|||+|.+.. +..+.|..++.
T Consensus 231 --~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~----~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~ 304 (821)
T CHL00095 231 --DILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQE----NNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA 304 (821)
T ss_pred --hhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHh----cCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh
Confidence 00112345666643 1122 2345666666543 2456899999997732 24566777777
Q ss_pred CCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHH----hcCCCcchhHHHHHHHhcCC---
Q psy13354 525 EPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILN----KENIKFETSALNLIATGAQG--- 592 (1342)
Q Consensus 525 ~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~----~~g~~i~~~al~~La~~~~g--- 592 (1342)
. ..+.+|.+|+..+ ...+.+.+|+..+.+..++.++...++..... ..++.++++++..+++.+++
T Consensus 305 r--g~l~~IgaTt~~ey~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 305 R--GELQCIGATTLDEYRKHIEKDPALERRFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred C--CCcEEEEeCCHHHHHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 5 4677888887654 34579999999999999999998888765443 35778999999999998875
Q ss_pred ---cHHHHHHHHHHHHhhc
Q psy13354 593 ---SMRDALSLTDQAINYS 608 (1342)
Q Consensus 593 ---~lr~a~~~L~kl~~~~ 608 (1342)
-+++++.+||.+++..
T Consensus 383 ~r~lPdkaidlld~a~a~~ 401 (821)
T CHL00095 383 DRFLPDKAIDLLDEAGSRV 401 (821)
T ss_pred cccCchHHHHHHHHHHHHH
Confidence 3778999999877643
No 480
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.12 E-value=1.3e-09 Score=140.02 Aligned_cols=201 Identities=17% Similarity=0.276 Sum_probs=132.8
Q ss_pred ccccchhhHHHHHHHHHc-----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCC
Q psy13354 392 TLIGQNHISKSLINALDK-----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC 466 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~-----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 466 (1342)
++.|++.+++.+.+.+.. ....+.++|+||||+|||++++.+++.++.
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~--------------------------- 375 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGR--------------------------- 375 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------------------
Confidence 489999999998876642 223457899999999999999999998862
Q ss_pred CccEEEEccCCCcCHHHH------------HHHHHHHhhcCccCCceEEEeccCccCCHHH----HHHHHHhhcCC----
Q psy13354 467 FMDYIEMDAASTRGINEM------------AQLLEQTIYAPINARYKIYVIDEVHMLTHHA----FNAMLKTLEEP---- 526 (1342)
Q Consensus 467 ~~d~~~i~~~~~~~~~~i------------~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~----~~~Ll~~Le~p---- 526 (1342)
.+..++.+.......+ ..++....... ....|+++||+|.++.+. .++|+..++..
T Consensus 376 --~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~--~~~~villDEidk~~~~~~g~~~~aLlevld~~~~~~ 451 (784)
T PRK10787 376 --KYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVG--VKNPLFLLDEIDKMSSDMRGDPASALLEVLDPEQNVA 451 (784)
T ss_pred --CEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcC--CCCCEEEEEChhhcccccCCCHHHHHHHHhccccEEE
Confidence 1222221111100000 01111111111 233599999999997653 58999998741
Q ss_pred -----------CCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----------cCCCcchhHHHH
Q psy13354 527 -----------PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----------ENIKFETSALNL 585 (1342)
Q Consensus 527 -----------~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----------~g~~i~~~al~~ 585 (1342)
-++++||+++|.. .++++|++|+.+++|.+++.+++.++++.++.. ..+.++++++..
T Consensus 452 ~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ 530 (784)
T PRK10787 452 FSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIG 530 (784)
T ss_pred EecccccccccCCceEEEEcCCCC-CCCHHHhcceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHH
Confidence 2567788877776 599999999999999999999999998887742 235799999999
Q ss_pred HHHhc--CCcHHHHHHHHHHHHhhc------CC-----CCCHHHHHHHhccC
Q psy13354 586 IATGA--QGSMRDALSLTDQAINYS------SE-----KITLNSMQEMLSII 624 (1342)
Q Consensus 586 La~~~--~g~lr~a~~~L~kl~~~~------~~-----~It~e~V~~~v~~~ 624 (1342)
+++.. +-..|.+...+++++... ++ .|+.+++.+.++..
T Consensus 531 ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~~~~~~~v~v~~~~~~~~lg~~ 582 (784)
T PRK10787 531 IIRYYTREAGVRSLEREISKLCRKAVKQLLLDKSLKHIEINGDNLHDYLGVQ 582 (784)
T ss_pred HHHhCCcccCCcHHHHHHHHHHHHHHHHHHhcCCCceeeecHHHHHHHhCCC
Confidence 99753 234455444444433211 11 26666666666543
No 481
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=99.11 E-value=1.1e-08 Score=123.90 Aligned_cols=305 Identities=13% Similarity=0.110 Sum_probs=163.2
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh--C--CC-CceEecCCHHHHHHHHHHHcc-
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF--N--AE-AANVQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~--g--~~-~~vi~~~sGs~A~~~al~al~- 110 (1342)
.+-.|.+.+++.+.+.... +.....+ .. +....+.+++.+.. + .. .+.++++||++|++.+++...
T Consensus 50 Gh~~p~v~~ai~~ql~~~~---~~~~~~~-~~----~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~ 121 (412)
T TIGR02407 50 GHNNPKLKQALIDYLADDG---IIHSLDM-AT----EAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARK 121 (412)
T ss_pred CCCCHHHHHHHHHHHhhcc---ceecccc-Cc----HHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhh
Confidence 4567889999888875311 1111111 11 23333555677653 2 22 233445699999999998763
Q ss_pred -CCCCEEEEeeccCCccchhhHHhh-----hCCce---eEEEEecCCCCC---CCCHHHHHHHHHhc-----CCeEEEEc
Q psy13354 111 -NPGDTIMGMSLQEGGHLTHGMMLN-----MSGKW---FNSICYGLNKKE---KIDYKKVEYLAKKN-----KPKLIIAG 173 (1342)
Q Consensus 111 -~pGD~Vlv~~~~~~~~~s~~~~~~-----~~g~~---~~~v~~~~~~~~---~id~e~Le~~i~~~-----~~~liv~~ 173 (1342)
....+|+...-.|.++-.....+. ..+.+ ..++.+|..... .-+++.+++.+.++ +.+.|++.
T Consensus 122 ~tgr~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~E 201 (412)
T TIGR02407 122 VTGRSNVVSFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILE 201 (412)
T ss_pred hcCCCeEEEECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEec
Confidence 233567765544433322211110 00000 112222322100 01466777777632 34556653
Q ss_pred CC-----C-CCcccCHHHHHHHHHHcCCEEEEEcccc-hhhhh---cCCCCCCCCCCcEEEecCCccCCCCCe---eEEE
Q psy13354 174 AS-----A-YSQYIDFERFYHIAKNINSYFMVDMAHY-AGLIA---AGEYPNPVPFADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 174 ~s-----~-~~~~~~l~~I~~la~~~gi~LIvDea~~-~g~~~---~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv 240 (1342)
+- . .+....+++|.++|++||+++|+||++. +|..+ ...+.+. .+|+++ ++|++ ++.| |+++
T Consensus 202 pi~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v--~PDi~~--~~K~l-g~~G~pigav~ 276 (412)
T TIGR02407 202 TVQGEGGINVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGI--EPDIVC--LSKSI-SGYGLPLALTL 276 (412)
T ss_pred cccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCC--CCCEEE--echhc-cCCccceeEEE
Confidence 31 1 1234479999999999999999999986 32211 1111111 258775 55999 4434 8999
Q ss_pred EechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHh----CC-cEEeeCCCCCe
Q psy13354 241 MKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQ----RG-IRIVSGGTKSH 314 (1342)
Q Consensus 241 ~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~----~g-~~~~~~~~~~~ 314 (1342)
+++++ +.+.......+++ .++..++++.+..+. +.+ ..+.++..+..+++.+.|+. .+ +.. .....+.
T Consensus 277 ~~~~~-~~~~~~~~~~T~~--gnpl~~aaa~a~l~~~i~~--~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~-~vrg~Gl 350 (412)
T TIGR02407 277 IKPEL-DVWKPGEHNGTFR--GNNLAFVTATAALEYYWSD--DAFEKAVQRKSEIIQERLDRIVAEYPELIK-QVRGRGL 350 (412)
T ss_pred Echhh-hccCCCccCCCCC--ccHHHHHHHHHHHHHHhcc--cHHHHHHHHHHHHHHHHHHHHHhhCCCceE-eeeccee
Confidence 98875 4443222233333 244555555555553 432 23456666777777776664 22 222 1223467
Q ss_pred EEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 315 IILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 315 ~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++|+.+++......+...+++ +||.+.+... . ...+|+..+...+.
T Consensus 351 ~~~l~l~~~~~~~~~~~~~~~-~Gv~v~~~~~----~----~~~lr~~p~l~~t~ 396 (412)
T TIGR02407 351 MQGIECGDGDLAGKIAKAAFE-NGLIIETSGP----N----DEVIKLLPPLTIDE 396 (412)
T ss_pred EEEEEecChHHHHHHHHHHHH-CCCEEeccCC----C----CCEEEEECCCCCCH
Confidence 888888754333455555555 5999975311 1 24589887776554
No 482
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=99.11 E-value=8.7e-09 Score=127.04 Aligned_cols=248 Identities=18% Similarity=0.115 Sum_probs=140.6
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-CC-CceEecCCHHHHHHHHHHHcc----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-AE-AANVQPHSGSQANQAVFFSVL---- 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-~~-~~vi~~~sGs~A~~~al~al~---- 110 (1342)
.+-.|.+.+|+.+.+. .+..... .+....+ ...++.+++.+.+. .+ ..++|++||++|+..+++...
T Consensus 104 Gh~hp~v~~Av~~ql~-~~~~~~~--~~~~~~~----~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~~ 176 (504)
T PLN02760 104 GGSEPRLVAAATEQLN-KLPFYHS--FWNRTTK----PSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYNN 176 (504)
T ss_pred CCCCHHHHHHHHHHHh-hccceec--ccccCcH----HHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHHH
Confidence 3455779999888875 3321111 0011222 23334457777643 33 345666699999999999763
Q ss_pred --C-CC-CEEEEeeccCCccchhhHHhhhCCc------------eeEEEEecCCCC----C-------CCCHHHHHHHHH
Q psy13354 111 --N-PG-DTIMGMSLQEGGHLTHGMMLNMSGK------------WFNSICYGLNKK----E-------KIDYKKVEYLAK 163 (1342)
Q Consensus 111 --~-pG-D~Vlv~~~~~~~~~s~~~~~~~~g~------------~~~~v~~~~~~~----~-------~id~e~Le~~i~ 163 (1342)
+ ++ ..|+...-.+.+..... +...|. .+..++.|.... + ....+++++.+.
T Consensus 177 ~~g~~~r~~iI~~~~~yHG~t~~a--~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~ 254 (504)
T PLN02760 177 ALGRPNKKKFIARSKSYHGSTLIS--ASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLIL 254 (504)
T ss_pred hcCCCCCcEEEEECCCccCChHhh--hhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHH
Confidence 1 33 46776554444332111 111110 012222211000 0 001245666664
Q ss_pred h---cCCeEEEEcCCCCC-------cccCHHHHHHHHHHcCCEEEEEccc-chhhhhcC---CCCCCCCCCcEEEecCCc
Q psy13354 164 K---NKPKLIIAGASAYS-------QYIDFERFYHIAKNINSYFMVDMAH-YAGLIAAG---EYPNPVPFADFITSTTHK 229 (1342)
Q Consensus 164 ~---~~~~liv~~~s~~~-------~~~~l~~I~~la~~~gi~LIvDea~-~~g~~~~~---~~~~~l~~~Divv~S~sK 229 (1342)
. .+.+.|++.+ ..+ ....+++|.++|++||+++|+||++ ++|..+.. .+.+. .+|++++ +|
T Consensus 255 ~~~~~~iAAvI~EP-v~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv--~PDivtl--gK 329 (504)
T PLN02760 255 KEGPETIAAFIAEP-VMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNI--KPDLVSL--AK 329 (504)
T ss_pred hcCCCceEEEEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCC--CCcEEEe--cc
Confidence 2 2345566633 322 2224999999999999999999999 45544331 12222 2687655 59
Q ss_pred cCCCC--CeeEEEEechhHHHHhhc-------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 230 SLRGP--RGGFILMKKKYKKIINSA-------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 230 ~l~gp--~GG~iv~~~~l~~~l~~~-------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
.++|. +-|++++++++++.+... .+.+++++ +|..+|++.+.++.+.+. +..++..++.++|.+.|+
T Consensus 330 ~lggG~~PigAv~~~~~i~d~~~~~~~~~~~~~h~~T~~g--nPl~~Aaala~Le~i~~~--~l~~~~~~~g~~l~~~L~ 405 (504)
T PLN02760 330 ALSSAYMPIGAVLVSPEISDVIHSQSNKLGSFAHGFTYSG--HPVSCAVALEALKIYKER--NIPEHVNKIAPRFQDGIK 405 (504)
T ss_pred cccCCccccceEeecHHHHhhhhcccccccCcccCCCCCC--CHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHH
Confidence 99653 236688889998887542 22334443 577777777777776432 457788888888888887
Q ss_pred hC
Q psy13354 301 QR 302 (1342)
Q Consensus 301 ~~ 302 (1342)
+.
T Consensus 406 ~l 407 (504)
T PLN02760 406 AF 407 (504)
T ss_pred HH
Confidence 64
No 483
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=99.11 E-value=1.3e-08 Score=124.02 Aligned_cols=316 Identities=16% Similarity=0.071 Sum_probs=167.1
Q ss_pred Cceeeeec-----CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHH
Q psy13354 28 NNIELIAS-----ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~-----~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A 101 (1342)
..|.+.++ -.+-.|.+.+|+.+.+.. .. +.... +... +...++.+++.+..+.. .-+.|++|||+|
T Consensus 42 ~ylD~~~g~~~~~lGh~~p~v~~Ai~~ql~~-~~--~~~~~-~~~~----~~~~~la~~L~~~~p~~~~~v~f~~sGsEA 113 (443)
T PRK08360 42 EYIDFLSDAAVQNVGHNNPRVVKAIKEQTDK-LI--HYTPI-YGFP----VEPLLLAEKLIEIAPGDNPKVSFGLSGSDA 113 (443)
T ss_pred EEEEccccHhhcccCCCCHHHHHHHHHHHHh-cc--Ccccc-ccCc----HHHHHHHHHHHHhCCCCCCEEEEcCCHHHH
Confidence 44555444 245677799998888753 21 11111 1112 23334555788777654 456777799999
Q ss_pred HHHHHHHcc--CCCCEEEEeeccCCccchhhHHhhh--------CC--ceeEEEEecCCC--CCC--------CCHHHHH
Q psy13354 102 NQAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNM--------SG--KWFNSICYGLNK--KEK--------IDYKKVE 159 (1342)
Q Consensus 102 ~~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~--------~g--~~~~~v~~~~~~--~~~--------id~e~Le 159 (1342)
++.+++... .....|+.....+.++-.....+.. .+ ..+..++++... .+. -+++.++
T Consensus 114 ve~AlklAr~~tgr~~ii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (443)
T PRK08360 114 NDGAIKFARAYTKRRKILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIK 193 (443)
T ss_pred HHHHHHHHHHhcCCCeEEEEeCCcCCcCHHHHHhcCCCcccccCCCCCCCcEEEeCCccccccccCchhhhHHHHHHHHH
Confidence 999998652 2234566544333332111111000 00 112223222110 010 1234556
Q ss_pred HHHHh----cCCeEEEEcCCCCC------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEec
Q psy13354 160 YLAKK----NKPKLIIAGASAYS------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITST 226 (1342)
Q Consensus 160 ~~i~~----~~~~liv~~~s~~~------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S 226 (1342)
+.+.. .+.+.+++.|-..+ ....+++|.++|++||+++|+||+|.. ....+.... ..+ ..|++ +
T Consensus 194 ~~l~~~~~~~~iAAvi~eP~~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g-~gr~G~~~a~~~~~~~pDii--t 270 (443)
T PRK08360 194 EKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSG-LGRTGKWFAIEHFGVEPDII--T 270 (443)
T ss_pred HHHHhccCCCCeEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccC-CCcCccchhhhhcCCCCCEE--E
Confidence 66642 34566777552122 122599999999999999999999873 211222111 111 25776 5
Q ss_pred CCccCCCC-CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--C
Q psy13354 227 THKSLRGP-RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--G 303 (1342)
Q Consensus 227 ~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g 303 (1342)
++|++++. +.|++++++++++.+......+++++ ++..++++.+..+.+.+. +..++..++.+++.+.|++. .
T Consensus 271 lsK~l~~G~pigav~~~~~i~~~~~~~~~~~T~~~--~p~~~aaa~a~l~~l~~~--~l~~~~~~~g~~l~~~L~~l~~~ 346 (443)
T PRK08360 271 LGKPLGGGLPISATIGRAEIMDSLPPLAHAFTLSG--NPVASAAALAVIEEIEEK--NLLKRAEKLGNYTKKRLEEMKKK 346 (443)
T ss_pred ecccccCCceeEEEEEcHHHHhhhcCCCCCCCCCc--CHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHHh
Confidence 58999421 23999999999888865333333332 344455555555554322 35677777788888877653 2
Q ss_pred cEEeeC-CCCCeEEEEEccCCC--------CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 304 IRIVSG-GTKSHIILVDLRNKK--------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 304 ~~~~~~-~~~~~~v~i~~~~~~--------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+++.. ...+.++.+.+.... ....+...++ ++||++.+.. ...+|+..+..++.
T Consensus 347 ~~~v~~vrg~Gl~~gie~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~~~~~~----------~~~lr~~P~l~~t~ 410 (443)
T PRK08360 347 HELIGDVRGIGLMIGVDLVKDRETKERAYEEAAKVVWRAW-ELGLIVTFFS----------GNVLRIQPPLTIEK 410 (443)
T ss_pred CCCeeeeeccceEEEEEEecCCcccCccHHHHHHHHHHHH-HCCeEEeecC----------CCEEEEeCCCCCCH
Confidence 222111 112334445443211 1123444544 4699986421 24589877776654
No 484
>PRK14700 recombination factor protein RarA; Provisional
Probab=99.11 E-value=1.3e-09 Score=121.08 Aligned_cols=144 Identities=15% Similarity=0.143 Sum_probs=121.4
Q ss_pred hhcCCCCcEEEEEEeCCCC--CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhc------CCCcchhHHHHHHHhcCCc
Q psy13354 522 TLEEPPKYIKFILATTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE------NIKFETSALNLIATGAQGS 593 (1342)
Q Consensus 522 ~Le~p~~~~vlIl~t~~~~--kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~------g~~i~~~al~~La~~~~g~ 593 (1342)
++|+ ..++||.+|++.. .+-++|+|||.++.|.+++.+++...|++.+... .+.+++++++.|++.++||
T Consensus 3 ~vE~--G~i~LIGATTENP~f~vn~ALlSR~~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GD 80 (300)
T PRK14700 3 YVES--GKIILIGATTENPTYYLNDALVSRLFILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGD 80 (300)
T ss_pred CccC--CcEEEEeecCCCccceecHhhhhhhheeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCH
Confidence 3444 4788999998877 5678999999999999999999999999988752 3689999999999999999
Q ss_pred HHHHHHHHHHHHhhc-C-CC--CCHHHHHHHhccC----------cHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHH
Q psy13354 594 MRDALSLTDQAINYS-S-EK--ITLNSMQEMLSII----------DQKYLIQILDALAEQDGNLILSIANKIEIYNLSYS 659 (1342)
Q Consensus 594 lr~a~~~L~kl~~~~-~-~~--It~e~V~~~v~~~----------~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~ 659 (1342)
.|.++|.||.++... . +. ||.+.|++++... .-+.+..+.+++...|.+.|+-.+..|++.||+|.
T Consensus 81 aR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~~~yDk~gd~HYd~iSAf~KSiRGSDpDAAlYyLArml~~GEDp~ 160 (300)
T PRK14700 81 CRKILNLLERMFLISTRGDEIYLNKELFDQAVGETSRDFHREGKEFYEQLSAFHKSVRGTDPDAAIFWLSVMLDNGVDPL 160 (300)
T ss_pred HHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHHhcccCCcchhHHHHHHHHHHhhcCCccHHHHHHHHHHHcCCCHH
Confidence 999999999976533 2 22 9999999988533 23477888999999999999999999999999999
Q ss_pred HHHHHHHH
Q psy13354 660 IVLKDLSL 667 (1342)
Q Consensus 660 ~il~~L~~ 667 (1342)
.|.+.|..
T Consensus 161 ~IaRRLii 168 (300)
T PRK14700 161 VIARRMLC 168 (300)
T ss_pred HHHHHHHH
Confidence 88766544
No 485
>KOG0738|consensus
Probab=99.10 E-value=2.1e-09 Score=120.34 Aligned_cols=194 Identities=17% Similarity=0.168 Sum_probs=126.8
Q ss_pred hhccCCCCccccccchhhHHHHHHHHH---------cC-C-CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCccc
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINALD---------KK-R-LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITS 450 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l~---------~~-~-~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~ 450 (1342)
.....-..|+|+.|...+++-|++++- +| + .=.++|++||||||||.+|+++|.+.+.
T Consensus 203 l~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~t----------- 271 (491)
T KOG0738|consen 203 LQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGT----------- 271 (491)
T ss_pred hccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcC-----------
Confidence 344455689999999999999999973 22 2 2257999999999999999999998762
Q ss_pred CCCCCCcchhhhccCCCccEEEEccCCCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH------------HHH
Q psy13354 451 QPCGKCSVCVKIDNGCFMDYIEMDAASTR--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH------------HAF 516 (1342)
Q Consensus 451 ~~c~~~~~~~~~~~~~~~d~~~i~~~~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~------------~~~ 516 (1342)
-|+.+..+... ...+-..++..+..+..|--+.+|+|||+|.|.. ...
T Consensus 272 ------------------TFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvK 333 (491)
T KOG0738|consen 272 ------------------TFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVK 333 (491)
T ss_pred ------------------eEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHH
Confidence 24555443211 1122233333333333344456999999998832 234
Q ss_pred HHHHHhhcCC-----CCcEEEEEE-eCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 517 NAMLKTLEEP-----PKYIKFILA-TTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 517 ~~Ll~~Le~p-----~~~~vlIl~-t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
+.||-.++.- ...+++|++ ||-+..++.++++|+ ..+-.+-|+.+.....++..+..- ..-++-.++.|++.
T Consensus 334 sELLvQmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~-~~~~~~~~~~lae~ 412 (491)
T KOG0738|consen 334 SELLVQMDGVQGTLENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSV-ELDDPVNLEDLAER 412 (491)
T ss_pred HHHHHHhhccccccccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccc-cCCCCccHHHHHHH
Confidence 5666665532 145677776 566779999999999 567677777777777766555433 23456668888888
Q ss_pred cCC-cHHHHHHHHHHHH
Q psy13354 590 AQG-SMRDALSLTDQAI 605 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~ 605 (1342)
++| +-.++.+.|..+.
T Consensus 413 ~eGySGaDI~nvCreAs 429 (491)
T KOG0738|consen 413 SEGYSGADITNVCREAS 429 (491)
T ss_pred hcCCChHHHHHHHHHHH
Confidence 766 3334445554433
No 486
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.10 E-value=2.1e-09 Score=136.29 Aligned_cols=227 Identities=19% Similarity=0.293 Sum_probs=147.6
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHh-----------ccCCCCCCCCcccCCCCCCc
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL-----------NCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L-----------~~~~~~~~~~~~~~~c~~~~ 457 (1342)
.|.+++||++++..|.-++..+...+ +||+|++|+|||++|+.+++.+ +|+ -..||..|.
T Consensus 2 pf~~ivGq~~~~~al~~~av~~~~g~-vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~--------p~~~~~~~~ 72 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDPRIGG-VLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCD--------PDDPEEWCE 72 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCCCCCe-EEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCC--------CCCccccCh
Confidence 48899999999999888888777654 9999999999999999999998 342 245899999
Q ss_pred chhhhccCCC---ccEEEEccCCC----cCHHHHHHHHHHHh----hcCc-cCCceEEEeccCccCCHHHHHHHHHhhcC
Q psy13354 458 VCVKIDNGCF---MDYIEMDAAST----RGINEMAQLLEQTI----YAPI-NARYKIYVIDEVHMLTHHAFNAMLKTLEE 525 (1342)
Q Consensus 458 ~~~~~~~~~~---~d~~~i~~~~~----~~~~~i~~ii~~~~----~~p~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~ 525 (1342)
.|..+....+ ..|+.+..+.. .|..++...+..-. ...+ .+..-+++|||++.|+...++.|++.+++
T Consensus 73 ~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~~~q~~Ll~~le~ 152 (633)
T TIGR02442 73 ECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLLDDHLVDVLLDAAAM 152 (633)
T ss_pred hhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhCCHHHHHHHHHHHhc
Confidence 9999876654 24555433211 11112222221100 0011 23455999999999999999999999986
Q ss_pred C-------------CCcEEEEEEeCCC-CCChHHHhccE-EEEEEcCCC-HHHHHHHHHHHHH-----------------
Q psy13354 526 P-------------PKYIKFILATTEP-QKIPITVLSRC-IQFNLKKML-HHDIVNNLCYILN----------------- 572 (1342)
Q Consensus 526 p-------------~~~~vlIl~t~~~-~kl~~~L~sR~-~~i~~~~l~-~~el~~~l~~~~~----------------- 572 (1342)
. +..+.+|.++|-. ..+.++|.+|+ ..+.+..+. .++..+++.+...
T Consensus 153 g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~ 232 (633)
T TIGR02442 153 GVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAARWAAEQE 232 (633)
T ss_pred CCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHHHhhhhHH
Confidence 4 2345555555532 25678999999 556666654 3433333332111
Q ss_pred ------------hcCCCcchhHHHHHHHhc---CC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 573 ------------KENIKFETSALNLIATGA---QG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 573 ------------~~g~~i~~~al~~La~~~---~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
...+.++++++++|++.+ +- ++|..+..+.-+-.++ ...|+.+||++++...
T Consensus 233 ~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lv 304 (633)
T TIGR02442 233 ELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELV 304 (633)
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHH
Confidence 124678888888888764 22 4666666554332222 2458888888877443
No 487
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=99.10 E-value=2.4e-08 Score=121.08 Aligned_cols=282 Identities=11% Similarity=0.008 Sum_probs=157.5
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-CCC-
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-NPG- 113 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-~pG- 113 (1342)
.+-.|.+.+++.+.+.... . +.... +.+.++.+++.+.++.. ..+.|++||++|++.+++... -+|
T Consensus 68 Gh~~p~v~~ai~~q~~~~~--~-----~~~~~----~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~tgr 136 (433)
T PRK00615 68 GHSHPKICDAIQQGAERGT--S-----YGLTS----EQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGITGR 136 (433)
T ss_pred CCCCHHHHHHHHHHHHhCC--C-----CCCCC----HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCC
Confidence 4456779999888875321 1 11112 23344556777777643 466677799999999998662 234
Q ss_pred CEEEEeeccCCccchh-hHHhhhCCce--------------eEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCC
Q psy13354 114 DTIMGMSLQEGGHLTH-GMMLNMSGKW--------------FNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASA 176 (1342)
Q Consensus 114 D~Vlv~~~~~~~~~s~-~~~~~~~g~~--------------~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~ 176 (1342)
.+|+...-.|.++... .......+.. ...+.++.+ |++++++.+... ..+.|++. |.
T Consensus 137 ~~ii~~~~~yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~~~~~~aavI~E-pv 210 (433)
T PRK00615 137 SIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYN-----DFQIFQTVMNSLGHRVAGVIFE-PI 210 (433)
T ss_pred CEEEEEcCccCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCC-----CHHHHHHHHHhcCCceEEEEEC-CC
Confidence 4666544433332100 0011111000 001111222 788888888643 34556653 33
Q ss_pred CC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhc----CCCCCCCCCCcEEEecCCccCCC-CCeeEEEEech
Q psy13354 177 YS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA----GEYPNPVPFADFITSTTHKSLRG-PRGGFILMKKK 244 (1342)
Q Consensus 177 ~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~----~~~~~~l~~~Divv~S~sK~l~g-p~GG~iv~~~~ 244 (1342)
.+ ....+++|.++|++||+++|+||+|. |+-.+ ..+.+. .+|+++ ++|.++| .++|+++++++
T Consensus 211 ~~~~G~~~p~~~yl~~l~~lc~~~g~llI~DEv~t-G~R~G~~ga~~~~gv--~PDi~~--~gK~lggG~p~~av~~~~~ 285 (433)
T PRK00615 211 CANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVVT-GFRVAQGGAAAIYHV--KPDITV--YGKILGGGLPAAAVVAHKS 285 (433)
T ss_pred CCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcccc-cccccHhHHHHhcCC--CCCeEE--EcccccCCcceeeeeecHH
Confidence 33 22247899999999999999999994 43111 111111 258875 5799953 34699999999
Q ss_pred hHHHHhhccCCcc-ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEeeCCCCCeEEEEE
Q psy13354 245 YKKIINSAVFPGI-QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 245 l~~~l~~~~~~~~-~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~~~~~~~~v~i~ 319 (1342)
+++.+......+. .+...+|..++++.+.++.+.+ +...+++.++.+++.+.|++ .|+++.... .+.++.+.
T Consensus 286 i~~~~~~~~~~~~~~T~~g~p~~~aa~la~L~~i~~--~~~~~~~~~~g~~l~~~l~~~~~~~g~~v~~~r-~G~~~~i~ 362 (433)
T PRK00615 286 IMDHLAPEGTIFQAGTLSGNPLAMAAGKASINLCRE--QGFYTQLSTLEQNFLSPIEEMIRSQGFPVSLVR-YGSMFSFF 362 (433)
T ss_pred HHhhhcCCCCcccCCCCcccHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHHHcCCCeEEEe-eceEEEEE
Confidence 9988864222111 1223466777777777777642 23467777777777666554 455432212 23334444
Q ss_pred ccCCC-------------CCHHHHHHHHHHCCceeeec
Q psy13354 320 LRNKK-------------ITGKIAESILESANIICNKN 344 (1342)
Q Consensus 320 ~~~~~-------------~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+.... ....+...+++ +||++.+.
T Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~ 399 (433)
T PRK00615 363 FNENRPNNLAEAQLSDIEAFQTFYQSAFS-KGVYLSPS 399 (433)
T ss_pred EeCCCCCChHHHhhCCHHHHHHHHHHHHH-CCeeecCc
Confidence 43211 01234555555 59998754
No 488
>KOG0739|consensus
Probab=99.09 E-value=4.8e-10 Score=120.80 Aligned_cols=181 Identities=15% Similarity=0.190 Sum_probs=121.9
Q ss_pred CCCccccccchhhHHHHHHHHH---------cC-C-CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALD---------KK-R-LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~---------~~-~-~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
-..|+|+.|.+.+++.|++++- .| + .-.++||||||||||+.+|+++|.+.+.
T Consensus 129 NVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnS---------------- 192 (439)
T KOG0739|consen 129 NVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANS---------------- 192 (439)
T ss_pred CCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCC----------------
Confidence 3469999999999999999862 22 2 2368999999999999999999998873
Q ss_pred CcchhhhccCCCccEEEEccCCC--cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-------H----HHHHHHh
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAAST--RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH-------A----FNAMLKT 522 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~--~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~-------~----~~~Ll~~ 522 (1342)
-|+.+..++. .+..+-..++..+..+.....+.||+|||+|.+... + ...||=.
T Consensus 193 -------------TFFSvSSSDLvSKWmGESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQ 259 (439)
T KOG0739|consen 193 -------------TFFSVSSSDLVSKWMGESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQ 259 (439)
T ss_pred -------------ceEEeehHHHHHHHhccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHh
Confidence 2444433321 112234455555555556677889999999988321 1 1222222
Q ss_pred h---cCCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHH
Q psy13354 523 L---EEPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRD 596 (1342)
Q Consensus 523 L---e~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~ 596 (1342)
+ -+..+.++++.+||-+..++.+|++|+ ..+.++-|.........+-.+-.-...+++.....|++.++|.-..
T Consensus 260 MqGVG~d~~gvLVLgATNiPw~LDsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGs 337 (439)
T KOG0739|consen 260 MQGVGNDNDGVLVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGS 337 (439)
T ss_pred hhccccCCCceEEEecCCCchhHHHHHHHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcC
Confidence 2 234456666667788888999999999 5555555555444444443444445568899999999998875443
No 489
>KOG0743|consensus
Probab=99.09 E-value=1.6e-09 Score=125.05 Aligned_cols=199 Identities=18% Similarity=0.289 Sum_probs=131.7
Q ss_pred CCCccccccchhhHHHHHHHH----HcC--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINAL----DKK--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l----~~~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
|.+|+.++-....++.+.+.+ +++ -....||||||||||||+++-++|+.|+.
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~y--------------- 261 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNY--------------- 261 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCC---------------
Confidence 456666666555554444443 332 12367999999999999999999999973
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCcc-CC--HH---------------HH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHM-LT--HH---------------AF 516 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~-L~--~~---------------~~ 516 (1342)
|+..++.++...-++++.++... ..+.||+|+++|. +. .. ..
T Consensus 262 --------------dIydLeLt~v~~n~dLr~LL~~t------~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTl 321 (457)
T KOG0743|consen 262 --------------DIYDLELTEVKLDSDLRHLLLAT------PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTL 321 (457)
T ss_pred --------------ceEEeeeccccCcHHHHHHHHhC------CCCcEEEEeecccccccccccccccccccCCcceeeh
Confidence 56666666555556788888775 3456999999983 31 11 13
Q ss_pred HHHHHhhcCC----CCcEEEEEEeCCCCCChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 517 NAMLKTLEEP----PKYIKFILATTEPQKIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 517 ~~Ll~~Le~p----~~~~vlIl~t~~~~kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
.-||+.++.. ...-++||+||..+|++|+|.+++ ..+.+...+.+......++.+.-.. +..
T Consensus 322 SGLLNfiDGlwSscg~ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~-------- 390 (457)
T KOG0743|consen 322 SGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHR-------- 390 (457)
T ss_pred HHhhhhhccccccCCCceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---Ccc--------
Confidence 4588888853 235689999999999999999955 6788888888888777666554322 111
Q ss_pred cCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccC---cHHHHHHHHHHHHccC
Q psy13354 590 AQGSMRDALSLTDQAINYSSEKITLNSMQEMLSII---DQKYLIQILDALAEQD 640 (1342)
Q Consensus 590 ~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~---~~~~if~l~dal~~~~ 640 (1342)
+..+++++ ..+..+|..+|.+.+-.. ....+-.|++++.+.+
T Consensus 391 -------L~~eie~l--~~~~~~tPA~V~e~lm~~~~dad~~lk~Lv~~l~~~~ 435 (457)
T KOG0743|consen 391 -------LFDEIERL--IEETEVTPAQVAEELMKNKNDADVALKGLVEALESKK 435 (457)
T ss_pred -------hhHHHHHH--hhcCccCHHHHHHHHhhccccHHHHHHHHHHHHHhhh
Confidence 22233331 123457888887766433 3345666777665544
No 490
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.09 E-value=4.7e-09 Score=113.69 Aligned_cols=190 Identities=17% Similarity=0.267 Sum_probs=138.9
Q ss_pred hccCCCCccccccchhhHHHHHHHH---HcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINAL---DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l---~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
....|..+++|+|-+..++.|.+.. -.|..++.+|++|++|||||++++++..+...++
T Consensus 19 ~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~G------------------ 80 (249)
T PF05673_consen 19 KHPDPIRLDDLIGIERQKEALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQG------------------ 80 (249)
T ss_pred CCCCCCCHHHhcCHHHHHHHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcC------------------
Confidence 3466788999999888887776654 4678888999999999999999999999987432
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-HHHHHHHHHhhc----CCCCcEEEEE
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-HHAFNAMLKTLE----EPPKYIKFIL 534 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-~~~~~~Ll~~Le----~p~~~~vlIl 534 (1342)
..++++.... ..++.++++.+...| .+-||++|+..+=. ......|...|| ..|+++++..
T Consensus 81 --------LRlIev~k~~---L~~l~~l~~~l~~~~---~kFIlf~DDLsFe~~d~~yk~LKs~LeGgle~~P~NvliyA 146 (249)
T PF05673_consen 81 --------LRLIEVSKED---LGDLPELLDLLRDRP---YKFILFCDDLSFEEGDTEYKALKSVLEGGLEARPDNVLIYA 146 (249)
T ss_pred --------ceEEEECHHH---hccHHHHHHHHhcCC---CCEEEEecCCCCCCCcHHHHHHHHHhcCccccCCCcEEEEE
Confidence 3466665432 235666666666554 24589999977443 334455555554 5677887777
Q ss_pred EeCCCCCCh---------------H--------HHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcch-----hHHHH
Q psy13354 535 ATTEPQKIP---------------I--------TVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFET-----SALNL 585 (1342)
Q Consensus 535 ~t~~~~kl~---------------~--------~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~-----~al~~ 585 (1342)
++|+++-+. + +|.+|+ ..+.|.+++.++..+++..++++.|+.+++ +|++.
T Consensus 147 TSNRRHLv~E~~~d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~w 226 (249)
T PF05673_consen 147 TSNRRHLVPESFSDREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQW 226 (249)
T ss_pred ecchhhccchhhhhccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 777543111 1 667787 899999999999999999999999999984 55555
Q ss_pred HHHhcCCcHHHHHHHHHHH
Q psy13354 586 IATGAQGSMRDALSLTDQA 604 (1342)
Q Consensus 586 La~~~~g~lr~a~~~L~kl 604 (1342)
-....+.+-|.|.+-++.+
T Consensus 227 a~~rg~RSGRtA~QF~~~l 245 (249)
T PF05673_consen 227 ALRRGGRSGRTARQFIDDL 245 (249)
T ss_pred HHHcCCCCHHHHHHHHHHH
Confidence 5566677999988876543
No 491
>KOG0727|consensus
Probab=99.09 E-value=2.4e-09 Score=112.73 Aligned_cols=203 Identities=15% Similarity=0.205 Sum_probs=133.3
Q ss_pred CCC-CccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 386 RPS-NFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 386 ~p~-~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
+|. ++.|+-|.+..++++++++.- -..|.++|+|||||||||.+++++|++-..
T Consensus 149 kpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a------------- 215 (408)
T KOG0727|consen 149 KPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTA------------- 215 (408)
T ss_pred CCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccch-------------
Confidence 443 678888888888888888742 156778999999999999999999987642
Q ss_pred CCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------HH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------HA 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~~ 515 (1342)
.|+.+.++. ..|..-+++++.-+.. ..+.+|+|||+|.+.+ +.
T Consensus 216 ----------------~firvvgsefvqkylgegprmvrdvfrlake----napsiifideidaiatkrfdaqtgadrev 275 (408)
T KOG0727|consen 216 ----------------AFIRVVGSEFVQKYLGEGPRMVRDVFRLAKE----NAPSIIFIDEIDAIATKRFDAQTGADREV 275 (408)
T ss_pred ----------------heeeeccHHHHHHHhccCcHHHHHHHHHHhc----cCCcEEEeehhhhHhhhhccccccccHHH
Confidence 355555542 2344566666655543 3346999999997732 34
Q ss_pred HHHHHHhhcC-----CCCcEEEEEEeCCCCCChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 516 FNAMLKTLEE-----PPKYIKFILATTEPQKIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 516 ~~~Ll~~Le~-----p~~~~vlIl~t~~~~kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
+..|+..|.. +..++.+|++||+.+.+.+++++-+ ..++|+-++..+.+-...-+..+.++.-+-+.-.+++
T Consensus 276 qril~ellnqmdgfdq~~nvkvimatnradtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls~~vdle~~v~ 355 (408)
T KOG0727|consen 276 QRILIELLNQMDGFDQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLSDEVDLEDLVA 355 (408)
T ss_pred HHHHHHHHHhccCcCcccceEEEEecCcccccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCCcccCHHHHhc
Confidence 5556555543 4568899999999999999998655 6799998888887777766666666542223233344
Q ss_pred HhcCCcHHHHHHHHHHHHhhcC--C--CCCHHHHHHHh
Q psy13354 588 TGAQGSMRDALSLTDQAINYSS--E--KITLNSMQEML 621 (1342)
Q Consensus 588 ~~~~g~lr~a~~~L~kl~~~~~--~--~It~e~V~~~v 621 (1342)
+--.-+-.++...++.+-..+- . -|...|.++..
T Consensus 356 rpdkis~adi~aicqeagm~avr~nryvvl~kd~e~ay 393 (408)
T KOG0727|consen 356 RPDKISGADINAICQEAGMLAVRENRYVVLQKDFEKAY 393 (408)
T ss_pred CccccchhhHHHHHHHHhHHHHHhcceeeeHHHHHHHH
Confidence 3222233344444444433331 1 15566665544
No 492
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=99.08 E-value=2.4e-08 Score=121.41 Aligned_cols=305 Identities=13% Similarity=0.069 Sum_probs=161.9
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--CCceEecCCHHHHHHHHHHHcc--CC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--EAANVQPHSGSQANQAVFFSVL--NP 112 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~~~vi~~~sGs~A~~~al~al~--~p 112 (1342)
.+-.|.+.+++.+.+.. .. +.... ....+ ...++.+++.+.... ...++|++|||+|++.+++... ..
T Consensus 55 Gh~~p~v~~ai~~ql~~-~~--~~~~~-~~~~~----~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~tg 126 (421)
T PRK06777 55 GHRHPKVVAAVRQQLDQ-FT--HTAYQ-IVPYA----SYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYTG 126 (421)
T ss_pred CCCCHHHHHHHHHHHhh-cc--ccccc-ccCCh----HHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhhC
Confidence 45677799998888753 21 11111 11122 223345577777653 1345556699999999998652 22
Q ss_pred CCEEEEeeccCCccchhhHHhhh----C--C-----ceeEEEEecCCCCC---CCCHHHHHHHHHh----cCCeEEEEcC
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLNM----S--G-----KWFNSICYGLNKKE---KIDYKKVEYLAKK----NKPKLIIAGA 174 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~~----~--g-----~~~~~v~~~~~~~~---~id~e~Le~~i~~----~~~~liv~~~ 174 (1342)
..+|+.....|.++......+.. . + ..+..++++....+ .-+++.+++.+.. ...+.+++.+
T Consensus 127 r~~ii~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Ep 206 (421)
T PRK06777 127 RPGVIAFGGAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEP 206 (421)
T ss_pred CCeEEEEcCCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECC
Confidence 34576655444443222211100 0 0 00111222211111 1135667777752 2345566643
Q ss_pred CCCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEec
Q psy13354 175 SAYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKK 243 (1342)
Q Consensus 175 s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~ 243 (1342)
... ....+++|.++|++||+++|+||+|. |....+.... ..+ .+|++ +++|.+++. +.|++++++
T Consensus 207 -v~~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~t-g~gr~g~~~~~~~~~~~pDiv--~~sK~l~~G~pigav~~~~ 282 (421)
T PRK06777 207 -IQGEGGFNVAPPEFMSALRTLCDEHGILLIADEVQT-GFARTGKLFAMEYYDVKPDLI--TMAKSLGGGMPISAVVGRA 282 (421)
T ss_pred -ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEechhh-CCccCCchhhhhhcCCCCCEE--eeehhhcCCCceEEEEEcH
Confidence 221 33359999999999999999999987 3222222211 111 25766 578999421 229999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+.......++++ ++..++++.+.++.+.+ ++..++..++.+++.+.|++. ++.....+.+..+ .+.
T Consensus 283 ~i~~~~~~~~~~~T~~~--~p~~~aaa~a~L~~~~~--~~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~G~~~-~i~ 357 (421)
T PRK06777 283 EVMDAPAPGGLGGTYAG--NPLAVAAALAVLDVIAE--EKLCQRALILGAHLVEVLEKAKASCPAIVDIRARGSMV-AVE 357 (421)
T ss_pred HHHhccCCCCCCCCCCc--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCceEEE-EEE
Confidence 98888765433333332 44445555555555432 356778888888888888774 2211112333333 333
Q ss_pred ccCC--C-CCHHHHHHH---HHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 320 LRNK--K-ITGKIAESI---LESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 320 ~~~~--~-~~~~~~~~l---l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+... . .+.++...+ +.++||++.+...+ .+.+|+...-.
T Consensus 358 ~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~~~~~~--------g~~lr~~ppl~ 402 (421)
T PRK06777 358 FNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVH--------GNVIRFLYPLT 402 (421)
T ss_pred EecCccCCccHHHHHHHHHHHHhCCeEEeecCCC--------CCEEEEeCCCC
Confidence 3221 1 122333333 33469999764221 13689876543
No 493
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.08 E-value=2.8e-09 Score=132.59 Aligned_cols=203 Identities=20% Similarity=0.250 Sum_probs=145.5
Q ss_pred CCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 388 SNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
.+|.++.|.+.+++.+.+++.. -+.+..+|||||||||||.+|+++++.++.
T Consensus 239 v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~---------------- 302 (494)
T COG0464 239 VTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRS---------------- 302 (494)
T ss_pred cceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCC----------------
Confidence 3577777777777777666631 144558999999999999999999997762
Q ss_pred CcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHHHHH
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHAFNA 518 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~~~~ 518 (1342)
.|+.++.++.. ....+++++..+.. ..+.||++||+|.+. ....+.
T Consensus 303 -------------~fi~v~~~~l~sk~vGesek~ir~~F~~A~~----~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~ 365 (494)
T COG0464 303 -------------RFISVKGSELLSKWVGESEKNIRELFEKARK----LAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQ 365 (494)
T ss_pred -------------eEEEeeCHHHhccccchHHHHHHHHHHHHHc----CCCcEEEEEchhhhhccCCCCCchHHHHHHHH
Confidence 35555554211 23457777777663 344599999999872 246778
Q ss_pred HHHhhc--CCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCC-cchhHHHHHHHhcCC
Q psy13354 519 MLKTLE--EPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIK-FETSALNLIATGAQG 592 (1342)
Q Consensus 519 Ll~~Le--~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~-i~~~al~~La~~~~g 592 (1342)
|+..++ +...++++|.+||.++.++++++. |+ ..+.+++|+.++..++++..++..+.. .++-.++.+++.+.|
T Consensus 366 lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~ 445 (494)
T COG0464 366 LLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEG 445 (494)
T ss_pred HHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcC
Confidence 888885 445677788889999999999998 88 789999999999999999999876664 445667888886654
Q ss_pred -cHHHHHHHHHHHHhhc-----CCCCCHHHHHHHhcc
Q psy13354 593 -SMRDALSLTDQAINYS-----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 593 -~lr~a~~~L~kl~~~~-----~~~It~e~V~~~v~~ 623 (1342)
+-.++..++..+...+ ...||.+|..+++..
T Consensus 446 ~sgadi~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~ 482 (494)
T COG0464 446 YSGADIAALVREAALEALREARRREVTLDDFLDALKK 482 (494)
T ss_pred CCHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHh
Confidence 5555556665554443 224777776666644
No 494
>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated
Probab=99.07 E-value=1.6e-08 Score=122.62 Aligned_cols=291 Identities=13% Similarity=0.035 Sum_probs=159.9
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN---- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~---- 111 (1342)
..-.|.+.+|+.+.+. ....... ..+ .. +....+.+++.+..+.. +.+.+++|||+|++.+++....
T Consensus 58 Gh~~p~i~~Ai~~q~~-~~~~~~~--~~~-~~----~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~~~ 129 (428)
T PRK07986 58 GYNHPQLNAAMKSQID-AMSHVMF--GGI-TH----PPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQA 129 (428)
T ss_pred CCCCHHHHHHHHHHHh-hcCCccc--ccc-CC----HHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 3456779999888875 2211110 011 11 23344556777777543 4667777999999999986531
Q ss_pred ---CCCEEEEeeccCCccchhhHHhhh---------CC--ceeEEEEecCCC---CC-CCCHHHHHHHHHhc--CCeEEE
Q psy13354 112 ---PGDTIMGMSLQEGGHLTHGMMLNM---------SG--KWFNSICYGLNK---KE-KIDYKKVEYLAKKN--KPKLII 171 (1342)
Q Consensus 112 ---pGD~Vlv~~~~~~~~~s~~~~~~~---------~g--~~~~~v~~~~~~---~~-~id~e~Le~~i~~~--~~~liv 171 (1342)
...+|+.....|.+.......+.. .+ ..+..++.+... ++ .-|++++++.+... ....|+
T Consensus 130 ~g~~r~kii~~~~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi 209 (428)
T PRK07986 130 KGEPRQRFLTLRHGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVI 209 (428)
T ss_pred cCCCCcEEEEECCCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEE
Confidence 235777755444332111111100 00 011122222110 01 11566777777532 334455
Q ss_pred EcC--CCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--CeeEE
Q psy13354 172 AGA--SAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--RGGFI 239 (1342)
Q Consensus 172 ~~~--s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~GG~i 239 (1342)
+.+ ...+ ....+++|.++|++||+++|+||+| .|+...+... .... .+|+++ ++|.++|. +.|++
T Consensus 210 ~Epi~~g~gg~~~~~~~~L~~l~~lc~~~g~lLI~DEv~-tG~GrtG~~fa~~~~gv~PDi~t--~gK~l~gG~~p~~av 286 (428)
T PRK07986 210 LEPIVQGAGGMRIYHPEWLKRVRKLCDREGILLIADEIA-TGFGRTGKLFACEHAGIAPDILC--LGKALTGGTMTLSAT 286 (428)
T ss_pred EechhcCcCCcccCCHHHHHHHHHHHHHcCCEEEEeccc-cCCccCCCeeeecccCCCCCEEE--echhhhCCcccCcch
Confidence 533 1112 2346999999999999999999998 4432122211 1111 258885 67999543 23677
Q ss_pred EEechhHHHHhhcc-----CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-CCC
Q psy13354 240 LMKKKYKKIINSAV-----FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-GTK 312 (1342)
Q Consensus 240 v~~~~l~~~l~~~~-----~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~~~ 312 (1342)
++++++++.+.... +.++++ .+|..+|++.+.++.+.+. +..++..++.+++.+.|++. ..+.+.. ...
T Consensus 287 ~~~~~i~~~~~~~~~~~~~~~~T~~--g~p~~~aaa~a~L~~i~~~--~~~~~~~~~g~~l~~~l~~l~~~~~i~~vRg~ 362 (428)
T PRK07986 287 LTTREVAETISNGEAGCFMHGPTFM--GNPLACAVANASLSLLESG--DWQQQVAAIEAQLREELAPLRDAPMVADVRVL 362 (428)
T ss_pred hchHHHHHHhhcCCCCccccCCCCC--cCHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHhcCCCEEeEecc
Confidence 88889988886521 223333 3567777777766665422 34677888888888888764 2221110 122
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 313 SHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 313 ~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+.+..+.+..+.....+...++ ++||++.+
T Consensus 363 Gl~~~ve~~~~~~~~~~~~~l~-~~Gl~~~~ 392 (428)
T PRK07986 363 GAIGVVETTRPVNMAALQRFFV-EQGVWIRP 392 (428)
T ss_pred ceEEEEEeCCcccHHHHHHHHH-HCCcEEEe
Confidence 4556666654432334555555 56999875
No 495
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=99.07 E-value=4.4e-08 Score=119.77 Aligned_cols=244 Identities=14% Similarity=0.046 Sum_probs=140.0
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--CCCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL--NPGD 114 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~--~pGD 114 (1342)
.+-.|.+.+++.+.+.... . +.... +.+.++.+++.+.+..-+-+.|++|||+|++.+++... ...+
T Consensus 114 Gh~~p~v~~av~~ql~~~~--~-----~~~~~----~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~tgr~ 182 (474)
T PLN02482 114 GHADDEVLAALAETMKKGT--S-----FGAPC----LLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYTGRE 182 (474)
T ss_pred CCCCHHHHHHHHHHHhhCC--C-----CCCCC----HHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhcCCC
Confidence 3445779999888885321 1 11111 34445666787776533456667799999999998662 2235
Q ss_pred EEEEeeccCCccchh-hHH----------hhhCCce----eEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCC
Q psy13354 115 TIMGMSLQEGGHLTH-GMM----------LNMSGKW----FNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAY 177 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~-~~~----------~~~~g~~----~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~ 177 (1342)
+|+...-.|.++... ... ....|.. ..++.++++ |++.+++.+..+ ..+.|++.+ ..
T Consensus 183 ~Ii~~~g~YHG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~n-----d~~~l~~~l~~~~~~iAavI~Ep-v~ 256 (474)
T PLN02482 183 KIIKFEGCYHGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYN-----DLEAVKKLFEANKGEIAAVILEP-VV 256 (474)
T ss_pred EEEEECCccCCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCC-----ChHHHHHHHHhCCCceEEEEECC-CC
Confidence 676654444332211 100 0000110 012223333 788899888643 345566533 22
Q ss_pred C-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC-CCCCC-CCcEEEecCCccCCCC-CeeEEEEechhHH
Q psy13354 178 S-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY-PNPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKK 247 (1342)
Q Consensus 178 ~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~-~~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~ 247 (1342)
+ ....+++|.++|++||+++|+||++. |+..+... ...+. .+|++ +++|+++|. +-|.+++++++++
T Consensus 257 g~~G~i~p~~~fl~~lr~lc~~~g~lLI~DEV~t-GfR~g~~ga~~~~gv~PDi~--t~gK~lggG~Pigav~g~~ei~~ 333 (474)
T PLN02482 257 GNSGFIVPKKEFLEGLREITKENGALLVFDEVMT-GFRIAYGGAQEYFGITPDLT--TLGKVIGGGLPVGAYGGRREIME 333 (474)
T ss_pred CCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CeecCcchHhHHhCCCCCEE--EecchhhCCCceEEEEEcHHHHH
Confidence 2 23358899999999999999999984 44221100 00111 25876 456999542 2266789999998
Q ss_pred HHhhccCCcc-ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 248 IINSAVFPGI-QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 248 ~l~~~~~~~~-~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
.+......+. .+...+|..++++.+.++.+.+ .+..+++.++.+++++.|.+.
T Consensus 334 ~~~~~~~~~~~~T~~gnpl~~aAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~l 387 (474)
T PLN02482 334 MVAPAGPMYQAGTLSGNPLAMTAGIHTLKRLQQ--PGTYEYLDKITKKLIQGILEA 387 (474)
T ss_pred hhccCCCcccccCcchhHHHHHHHHHHHHHHhc--cCHHHHHHHHHHHHHHHHHHH
Confidence 8864211111 1112355666667777776642 245677888888888888764
No 496
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.07 E-value=3.1e-09 Score=134.78 Aligned_cols=203 Identities=18% Similarity=0.255 Sum_probs=142.5
Q ss_pred cCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
.....|+++.|.+.+++.+.+.+. .+..+..++|+||+|+|||++++.+++.++.
T Consensus 146 ~~~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~-------------- 211 (644)
T PRK10733 146 QIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKV-------------- 211 (644)
T ss_pred hhhCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCC--------------
Confidence 445679999998888877766553 2355677999999999999999999998863
Q ss_pred CCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-------------- 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------------- 513 (1342)
.++.++++. ..+...++++++.+... .+.||+|||+|.+..
T Consensus 212 ---------------~f~~is~~~~~~~~~g~~~~~~~~~f~~a~~~----~P~IifIDEiD~l~~~r~~~~~g~~~~~~ 272 (644)
T PRK10733 212 ---------------PFFTISGSDFVEMFVGVGASRVRDMFEQAKKA----APCIIFIDEIDAVGRQRGAGLGGGHDERE 272 (644)
T ss_pred ---------------CEEEEehHHhHHhhhcccHHHHHHHHHHHHhc----CCcEEEehhHhhhhhccCCCCCCCchHHH
Confidence 233333321 12334567777666433 346999999998732
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++.. ...+++|.+||.++.+++++.+ |+ ..+.++.|+.++..++++.++++..+.- +..+..+++
T Consensus 273 ~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~~-~~d~~~la~ 351 (644)
T PRK10733 273 QTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLAP-DIDAAIIAR 351 (644)
T ss_pred HHHHHHHHhhhcccCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCCC-cCCHHHHHh
Confidence 1345666666542 3568888999999999999985 77 7899999999999999998887755422 223566888
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
.+.| +..++.+++..+...+ ...|+.+++++++
T Consensus 352 ~t~G~sgadl~~l~~eAa~~a~r~~~~~i~~~d~~~a~ 389 (644)
T PRK10733 352 GTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAK 389 (644)
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHH
Confidence 7765 5555666665555433 2348888887765
No 497
>KOG0728|consensus
Probab=99.06 E-value=1.8e-09 Score=113.51 Aligned_cols=214 Identities=19% Similarity=0.262 Sum_probs=143.1
Q ss_pred HHHHHHhhccCCCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCC
Q psy13354 376 IIKVVLARKYRPSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443 (1342)
Q Consensus 376 ~~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~ 443 (1342)
+..+.+..|-...+++-+-|.+..++++++.|.-. --|..+|+|||||+|||.+|++++..-.|
T Consensus 132 LVsLMmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c---- 207 (404)
T KOG0728|consen 132 LVSLMMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDC---- 207 (404)
T ss_pred hhHHHhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcce----
Confidence 34455667666666666666788888888887422 22457999999999999999999998765
Q ss_pred CCCCcccCCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH----
Q psy13354 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---- 513 (1342)
Q Consensus 444 ~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---- 513 (1342)
-|+.+.++. ..+..-+++++-.+. ...+.+++.||+|.+..
T Consensus 208 -------------------------~firvsgselvqk~igegsrmvrelfvmar----ehapsiifmdeidsigs~r~e 258 (404)
T KOG0728|consen 208 -------------------------TFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDSIGSSRVE 258 (404)
T ss_pred -------------------------EEEEechHHHHHHHhhhhHHHHHHHHHHHH----hcCCceEeeeccccccccccc
Confidence 255554431 122234555544433 33456999999998832
Q ss_pred -------HHHHHHHHh---hcC--CCCcEEEEEEeCCCCCChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCc
Q psy13354 514 -------HAFNAMLKT---LEE--PPKYIKFILATTEPQKIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKF 578 (1342)
Q Consensus 514 -------~~~~~Ll~~---Le~--p~~~~vlIl~t~~~~kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i 578 (1342)
+.+...+.. |+. ...++.+|++||+.+-+++++++-+ ..++|++|+++...++|+-+.++.++.=
T Consensus 259 ~~~ggdsevqrtmlellnqldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~r 338 (404)
T KOG0728|consen 259 SGSGGDSEVQRTMLELLNQLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLTR 338 (404)
T ss_pred CCCCccHHHHHHHHHHHHhccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchhc
Confidence 234444444 432 3568899999999999999998655 6799999999999999987776644321
Q ss_pred chhHHHHHHHhcCC-cHHHHHHHHHHHHhhcC--C--CCCHHHHHHHhcc
Q psy13354 579 ETSALNLIATGAQG-SMRDALSLTDQAINYSS--E--KITLNSMQEMLSI 623 (1342)
Q Consensus 579 ~~~al~~La~~~~g-~lr~a~~~L~kl~~~~~--~--~It~e~V~~~v~~ 623 (1342)
--.+..+|+...| +-......+..+-.|+- . .+|.+|.+-+++.
T Consensus 339 -gi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~k 387 (404)
T KOG0728|consen 339 -GINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 387 (404)
T ss_pred -ccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHH
Confidence 1125566665433 44455556666666663 2 2888887776643
No 498
>PRK07678 aminotransferase; Validated
Probab=99.06 E-value=2.4e-08 Score=122.14 Aligned_cols=312 Identities=13% Similarity=0.065 Sum_probs=166.7
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN----- 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~----- 111 (1342)
..-.|.+.+|+.+.+.. .. +... .+ .. +...++.+++.+.++....+.|++||++|++.+++....
T Consensus 62 Gh~~p~v~~ai~~q~~~-~~--~~~~-~~-~~----~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t~~~ 132 (451)
T PRK07678 62 GYGRKELAEAAYEQLKT-LS--YFPL-TQ-SH----EPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYHAQK 132 (451)
T ss_pred CCCCHHHHHHHHHHHHh-cC--cccc-cc-CC----HHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 44567788998888752 21 1111 11 12 223345567888776555677777999999999986521
Q ss_pred --CC-CEEEEeeccCCccchhhHHhh----------hCCceeEEEEecCCCCCC-------CC---HHHHHHHHH---hc
Q psy13354 112 --PG-DTIMGMSLQEGGHLTHGMMLN----------MSGKWFNSICYGLNKKEK-------ID---YKKVEYLAK---KN 165 (1342)
Q Consensus 112 --pG-D~Vlv~~~~~~~~~s~~~~~~----------~~g~~~~~v~~~~~~~~~-------id---~e~Le~~i~---~~ 165 (1342)
+| .+|+...-.|.++........ ....++..++.+...... -+ ++.+++.+. ..
T Consensus 133 g~~~r~~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 212 (451)
T PRK07678 133 GEPHRYKFISRYRAYHGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSE 212 (451)
T ss_pred CCCCCcEEEEECCCcCCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCC
Confidence 23 467765544433322111110 000111222221110000 01 233555564 23
Q ss_pred CCeEEEEcC--CC----CCcccCHHHHHHHHHHcCCEEEEEcccc-hhhhh---cCCCCCCCCCCcEEEecCCccCCCC-
Q psy13354 166 KPKLIIAGA--SA----YSQYIDFERFYHIAKNINSYFMVDMAHY-AGLIA---AGEYPNPVPFADFITSTTHKSLRGP- 234 (1342)
Q Consensus 166 ~~~liv~~~--s~----~~~~~~l~~I~~la~~~gi~LIvDea~~-~g~~~---~~~~~~~l~~~Divv~S~sK~l~gp- 234 (1342)
+.+.|++.| +. .+....++++.++|++||+++|+||++. +|..+ ...+.+. .+|+++. +|.++|.
T Consensus 213 ~iAAvi~EPiqg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv--~PDivt~--gK~lggG~ 288 (451)
T PRK07678 213 TIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGV--KPDIITM--AKGITSAY 288 (451)
T ss_pred ceEEEEEccccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCC--CCCEEEe--ecccccCC
Confidence 456666644 11 1233369999999999999999999983 44322 1111221 2698866 5999553
Q ss_pred -CeeEEEEechhHHHHhhcc----CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcE
Q psy13354 235 -RGGFILMKKKYKKIINSAV----FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIR 305 (1342)
Q Consensus 235 -~GG~iv~~~~l~~~l~~~~----~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~ 305 (1342)
+-|++++++++++.+.... ..+..+...+|..+|++.+.++.+.+. .+.++..+..++|.+.|.+ .++.
T Consensus 289 ~Pi~av~~~~~i~~~~~~~~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~--~~~~~~~~~g~~l~~~l~~~~~~~~~v 366 (451)
T PRK07678 289 LPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALALKNLEIMENE--NLIERSAQLGELLLEQLKEELGEHPLV 366 (451)
T ss_pred cceeEEEEcHHHHHHHhccCcccccccCCCCCcCHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 2388889999988876421 112222233667777777777776422 3566777777788777754 2322
Q ss_pred EeeCCCCCeEEEEEccCC------CC---CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNK------KI---TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~------~~---~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.... ..+.++.+.+... .+ ...+...+++ +||++.+. .|.++.. ...+|++.+..+|.
T Consensus 367 ~~vr-g~Gl~~~i~~~~~~~~~~~~~~~~a~~i~~~l~~-~Gv~~~~~-g~~v~~~---~~~lrl~Ppl~it~ 433 (451)
T PRK07678 367 GDIR-GKGLLVGIELVNDKETKEPADNDKVASVVAACKE-KGLIIGKN-GDTVAGY---NNVLTLSPPLVISS 433 (451)
T ss_pred EEEE-eeceEEEEEEecCCcccCcCchHHHHHHHHHHHH-CCcEEeec-CccccCC---CCEEEEECCCcCCH
Confidence 1111 1233444554211 11 1234444444 59999753 2222221 24589887776553
No 499
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=99.06 E-value=4.7e-08 Score=119.07 Aligned_cols=315 Identities=14% Similarity=0.082 Sum_probs=161.8
Q ss_pred Cceeeeec-----CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHH
Q psy13354 28 NNIELIAS-----ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~-----~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~ 100 (1342)
..|.+.++ -.+-.|.+.+|+.+.+.. .. +.... .... +...++.+++.+..... +.++|++||++
T Consensus 34 ~ylD~~~g~~~~~lGh~~p~v~~a~~~ql~~-~~--~~~~~-~~~~----~~~~~la~~l~~~~p~~~~~~v~f~~sGse 105 (420)
T TIGR00700 34 RLIDFASGIAVLNIGHSHPRVVDAVRTQVAE-FT--HTCFM-VTPY----EGYVALAEKLNRIAPGSGPKKSVFFNSGAE 105 (420)
T ss_pred EEEECccCHHhccCCCCCHHHHHHHHHHHHh-cc--Ccccc-ccCC----hHHHHHHHHHHHhCCCCCCCEEEEeCCcHH
Confidence 44555443 245677899998888853 21 11110 0111 22333555777776422 45667779999
Q ss_pred HHHHHHHHcc--CCCCEEEEeeccCCccchhhHHhh------hCC-----ceeEEEEecCCCCC-----CC----CHHHH
Q psy13354 101 ANQAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLN------MSG-----KWFNSICYGLNKKE-----KI----DYKKV 158 (1342)
Q Consensus 101 A~~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~------~~g-----~~~~~v~~~~~~~~-----~i----d~e~L 158 (1342)
|++.+++... ....+|+.....|.++-.....+. ..+ .++..++++..... .. +++.+
T Consensus 106 A~e~AlklAr~~tgr~~ii~~~~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (420)
T TIGR00700 106 AVENAVKIARSYTGRPGVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAA 185 (420)
T ss_pred HHHHHHHHHHHhcCCCcEEEECCCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHH
Confidence 9999998652 223456665444433322211110 001 01122222211000 01 24566
Q ss_pred HHHHH----hcCCeEEEEcC--CC----CCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEe
Q psy13354 159 EYLAK----KNKPKLIIAGA--SA----YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITS 225 (1342)
Q Consensus 159 e~~i~----~~~~~liv~~~--s~----~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~ 225 (1342)
++.+. ....+.|++.+ +. .+....+++|.++|++||+++|+||++..... .+... .... .+|+++
T Consensus 186 ~~~~~~~~~~~~iAavi~Epi~g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr-~g~~~a~~~~~~~pDi~~- 263 (420)
T TIGR00700 186 RAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFAR-TGAMFACEHEGPEPDLIT- 263 (420)
T ss_pred HHHHHhhcCCCcEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcc-cchhHHHhhcCCCCCEEE-
Confidence 66653 23345566643 11 11223599999999999999999999863211 22111 1111 257664
Q ss_pred cCCccCCCC-CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhC-
Q psy13354 226 TTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKIYQKQVVKNAKILSKILDQR- 302 (1342)
Q Consensus 226 S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~~~~~l~~~a~~l~~~L~~~- 302 (1342)
++|.+++. +-|++++++++++.+.......++++ ++...+++.+..+.+ ++. +.++..+..+++.+.|.+.
T Consensus 264 -lsK~l~~G~pig~v~~~~~i~~~~~~~~~~~T~~~--~pl~~aaa~a~l~~l~~~~---~~~~~~~~g~~l~~~L~~l~ 337 (420)
T TIGR00700 264 -TAKSLADGLPLSGVTGRAEIMDAPAPGGLGGTYAG--NPLACAAALAVLAIIESEG---LIERARQIGRLVTDRLTTLK 337 (420)
T ss_pred -eeccccCCcceEEEEecHHHHhhcCCCCcCCCCCc--CHHHHHHHHHHHHHHHhcc---HHHHHHHHHHHHHHHHHHHH
Confidence 77999421 12999999999888765433344443 344455554555543 222 3445555555666666542
Q ss_pred ---C-cEEeeCCCCCeEEEEEccCC---CCCHHHHHHHH---HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 303 ---G-IRIVSGGTKSHIILVDLRNK---KITGKIAESIL---ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 303 ---g-~~~~~~~~~~~~v~i~~~~~---~~~~~~~~~ll---~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +..+. +. +.+.++.+.+. ..+..+...+. .++||.+.+...+ .+.+|++.+...+
T Consensus 338 ~~~~~~~~vr-g~-G~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~Gv~i~p~~~f--------~~~lRl~p~l~~~ 403 (420)
T TIGR00700 338 AVDPRIGDVR-GL-GAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMF--------GNIIRFLPPLTIG 403 (420)
T ss_pred hhCCCEEEee-cc-ceEEEEEEecCCCCCccHHHHHHHHHHHHHCCeEEeccCCC--------CCEEEEECCCCcC
Confidence 2 22222 23 55666655322 11222333332 4569999864322 1468998765333
No 500
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=99.05 E-value=4e-08 Score=120.25 Aligned_cols=307 Identities=14% Similarity=0.096 Sum_probs=161.1
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--cCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV--LNP 112 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al--~~p 112 (1342)
.+-.|.+.+|+.+.+.. .. .+. . ..... +...++.+++.+.++.. ..++|++||++|+..+++.. ...
T Consensus 71 Gh~~p~v~~ai~~q~~~-~~-~~~-~-~~~~~----~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~tg 142 (443)
T PRK06058 71 GNSAPRVVEAVREQVAR-FT-HTC-F-MVTPY----EGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYTG 142 (443)
T ss_pred CCCCHHHHHHHHHHHHh-cc-Ccc-c-cccCC----HHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhhC
Confidence 45667799998888853 21 111 0 01112 33344566787776532 45666779999999999844 223
Q ss_pred CCEEEEeeccCCccchhhHHhh------hCC-----ceeEEEEec--CCCC--CCCC--------HHHHHHHHHhcCCeE
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLN------MSG-----KWFNSICYG--LNKK--EKID--------YKKVEYLAKKNKPKL 169 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~------~~g-----~~~~~v~~~--~~~~--~~id--------~e~Le~~i~~~~~~l 169 (1342)
.++|++....|.++......+. ..+ ..+..++++ .++. ...+ .+.+++.+...+.+.
T Consensus 143 r~~ii~~~~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAa 222 (443)
T PRK06058 143 RQAVVVFDHAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAA 222 (443)
T ss_pred CCeEEEECCCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEE
Confidence 4677776554444322211110 000 011112211 1110 0011 122333333344566
Q ss_pred EEEcCCCCC-------cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC-CeeE
Q psy13354 170 IIAGASAYS-------QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP-RGGF 238 (1342)
Q Consensus 170 iv~~~s~~~-------~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp-~GG~ 238 (1342)
+++.+ ..+ ....+++|.++|++||+++|.||++. |+...+... ...+ .+|+++. +|.+++. +-|+
T Consensus 223 vi~EP-i~g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~t-GfgRtG~~fa~~~~gv~PDiv~~--gK~l~~G~Pi~a 298 (443)
T PRK06058 223 VIIEP-IQGEGGFIVPAEGFLPALLEWCRENGVVFIADEVQT-GFARTGAWFACEHEGIVPDLITT--AKGIAGGLPLSA 298 (443)
T ss_pred EEECC-ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcChhhhHHHhcCCCCCEEEE--cccccCCCccEE
Confidence 66643 322 23369999999999999999999986 221112111 1111 2588866 4999432 1288
Q ss_pred EEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCe
Q psy13354 239 ILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSH 314 (1342)
Q Consensus 239 iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~ 314 (1342)
+++++++++.+......+++++ +|..++++.+.++.+.+. +..++..+..+++.+.|+++ ++.....+. +.
T Consensus 299 v~~~~~i~~~~~~~~~~~T~~g--npl~~aaa~a~L~~~~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~i~~vrg~-G~ 373 (443)
T PRK06058 299 VTGRAEIMDAPHPGGLGGTYGG--NPVACAAALAAIETIEED--DLVARARQIEALMTDRLRALAAEDDRIGDVRGR-GA 373 (443)
T ss_pred EEEcHHHHhhccCCCCCCCCCC--CHHHHHHHHHHHHHHHHc--CHHHHHHHHHHHHHHHHHHHHhhCCcEEeeecc-ce
Confidence 9999999888765433334433 455566666666654322 35677777788888888763 321111223 33
Q ss_pred EEEEEccCC---CCCH----HHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 315 IILVDLRNK---KITG----KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 315 ~v~i~~~~~---~~~~----~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++.+.+... ..+. .+...++ ++||++.+.... ...+|+..+-..+.
T Consensus 374 ~~~i~~~~~~~~~~~~~~~~~l~~~~~-~~Gv~~~~~~~~--------~~~lr~~Ppl~~t~ 426 (443)
T PRK06058 374 MIAIELVKPGTTEPDAELTKALAAAAH-AAGVIVLTCGTY--------GNVIRLLPPLVIGD 426 (443)
T ss_pred EEEEEEecCCCCCCcHHHHHHHHHHHH-HCCeEEeccCCC--------CCEEEEECCCccCH
Confidence 344444221 1122 2333444 469999753111 13588866655443
Done!