Query psy13354
Match_columns 1342
No_of_seqs 654 out of 6109
Neff 8.0
Searched_HMMs 29240
Date Fri Aug 16 17:19:17 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy13354.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/13354hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zxi_A TRNA uridine 5-carboxym 100.0 2E-143 6E-148 1321.7 44.6 552 761-1333 77-635 (637)
2 3ces_A MNMG, tRNA uridine 5-ca 100.0 8E-143 3E-147 1321.5 35.6 565 761-1333 78-643 (651)
3 3cp8_A TRNA uridine 5-carboxym 100.0 1E-137 5E-142 1275.6 40.5 564 761-1333 71-641 (641)
4 3g5s_A Methylenetetrahydrofola 100.0 2.2E-72 7.6E-77 641.3 17.8 294 759-1125 62-384 (443)
5 3ou5_A Serine hydroxymethyltra 100.0 3.8E-43 1.3E-47 406.6 33.4 375 5-380 32-431 (490)
6 1jr3_A DNA polymerase III subu 100.0 3.3E-41 1.1E-45 402.4 42.2 359 379-742 4-363 (373)
7 2a7v_A Serine hydroxymethyltra 100.0 2.8E-37 9.4E-42 377.0 32.3 375 5-380 32-431 (490)
8 1jr3_D DNA polymerase III, del 100.0 5.2E-36 1.8E-40 353.3 25.7 309 401-738 7-334 (343)
9 1sxj_C Activator 1 40 kDa subu 100.0 2.7E-34 9.4E-39 338.1 33.0 311 378-738 12-330 (340)
10 1a5t_A Delta prime, HOLB; zinc 100.0 7.9E-35 2.7E-39 341.2 27.2 313 393-738 4-322 (334)
11 2chq_A Replication factor C sm 100.0 4.6E-34 1.6E-38 332.8 29.9 310 378-738 4-316 (319)
12 1rv3_A Serine hydroxymethyltra 100.0 5.5E-33 1.9E-37 342.4 36.3 374 6-380 23-421 (483)
13 1iqp_A RFCS; clamp loader, ext 100.0 7.8E-33 2.7E-37 323.6 30.9 310 378-738 12-324 (327)
14 3h7f_A Serine hydroxymethyltra 100.0 6.4E-32 2.2E-36 330.2 34.2 374 5-378 23-402 (447)
15 3n0l_A Serine hydroxymethyltra 100.0 2.2E-31 7.6E-36 322.0 37.4 373 7-379 5-378 (417)
16 3gbx_A Serine hydroxymethyltra 100.0 1.9E-31 6.7E-36 322.7 34.1 373 7-379 10-385 (420)
17 1sxj_D Activator 1 41 kDa subu 100.0 1.2E-31 4.2E-36 317.1 30.8 314 376-737 22-352 (353)
18 3u61_B DNA polymerase accessor 100.0 9.6E-32 3.3E-36 314.3 27.5 297 378-737 13-319 (324)
19 1sxj_E Activator 1 40 kDa subu 100.0 5.5E-32 1.9E-36 320.4 25.4 329 380-738 3-352 (354)
20 1sxj_B Activator 1 37 kDa subu 100.0 2.2E-31 7.4E-36 310.8 29.8 307 379-738 9-319 (323)
21 3ecd_A Serine hydroxymethyltra 100.0 4.3E-30 1.5E-34 311.4 34.0 375 5-379 10-386 (425)
22 2gno_A DNA polymerase III, gam 100.0 3.1E-30 1.1E-34 296.2 26.2 283 395-738 1-297 (305)
23 2vi8_A Serine hydroxymethyltra 100.0 6.4E-29 2.2E-33 299.2 34.8 372 7-378 3-375 (405)
24 2dkj_A Serine hydroxymethyltra 100.0 6.5E-28 2.2E-32 290.6 36.2 367 10-376 6-374 (407)
25 3pvs_A Replication-associated 99.9 3.1E-25 1.1E-29 267.9 32.1 301 379-720 14-346 (447)
26 1njg_A DNA polymerase III subu 99.9 8.7E-25 3E-29 243.0 26.1 240 378-622 10-249 (250)
27 2w8t_A SPT, serine palmitoyltr 99.9 1.6E-22 5.6E-27 245.4 29.6 317 30-369 67-398 (427)
28 3tqx_A 2-amino-3-ketobutyrate 99.9 5.6E-23 1.9E-27 246.6 25.1 317 29-368 45-378 (399)
29 3nnk_A Ureidoglycine-glyoxylat 99.9 1.5E-21 5.2E-26 235.1 30.9 314 28-365 13-368 (411)
30 3a2b_A Serine palmitoyltransfe 99.9 6.5E-22 2.2E-26 237.6 26.7 318 28-368 44-374 (398)
31 3v76_A Flavoprotein; structura 99.9 1.3E-25 4.3E-30 270.2 -5.8 251 804-1096 129-416 (417)
32 3h14_A Aminotransferase, class 99.9 1.7E-21 5.8E-26 233.4 29.5 319 25-365 29-363 (391)
33 1bs0_A Protein (8-amino-7-oxon 99.9 1E-21 3.4E-26 234.7 27.2 317 28-368 40-369 (384)
34 2dr1_A PH1308 protein, 386AA l 99.9 1.9E-21 6.5E-26 232.0 29.6 311 32-368 24-361 (386)
35 2chg_A Replication factor C sm 99.9 1.7E-21 5.7E-26 213.5 25.8 219 379-623 5-225 (226)
36 3kki_A CAI-1 autoinducer synth 99.9 8.2E-22 2.8E-26 237.8 25.3 312 33-369 64-387 (409)
37 1fc4_A 2-amino-3-ketobutyrate 99.9 1.2E-21 4.2E-26 235.3 26.7 316 29-369 47-380 (401)
38 1u08_A Hypothetical aminotrans 99.9 3.5E-21 1.2E-25 230.2 30.0 341 5-365 9-371 (386)
39 4dq6_A Putative pyridoxal phos 99.9 1.9E-21 6.7E-26 232.5 27.6 332 11-364 17-373 (391)
40 1b5p_A Protein (aspartate amin 99.9 2.6E-21 8.9E-26 231.4 28.5 314 27-364 31-365 (385)
41 2huf_A Alanine glyoxylate amin 99.9 3.2E-21 1.1E-25 230.9 28.8 315 28-367 19-363 (393)
42 1gd9_A Aspartate aminotransfer 99.9 1.4E-21 4.7E-26 233.9 25.6 337 8-365 7-367 (389)
43 3isl_A Purine catabolism prote 99.9 7.7E-21 2.6E-25 229.3 32.2 318 28-369 11-372 (416)
44 3dzz_A Putative pyridoxal 5'-p 99.9 1.4E-21 4.9E-26 233.7 24.1 317 27-364 27-369 (391)
45 2yrr_A Aminotransferase, class 99.9 6.2E-21 2.1E-25 224.3 28.9 311 30-369 2-335 (353)
46 1vjo_A Alanine--glyoxylate ami 99.9 8.6E-21 3E-25 227.2 30.5 313 30-367 36-375 (393)
47 3zrp_A Serine-pyruvate aminotr 99.9 9.6E-21 3.3E-25 225.6 30.5 312 30-369 4-346 (384)
48 3l8a_A METC, putative aminotra 99.9 3.7E-21 1.3E-25 233.0 25.7 320 26-364 60-402 (421)
49 3nra_A Aspartate aminotransfer 99.9 3.9E-21 1.3E-25 231.3 25.7 319 29-365 41-386 (407)
50 2z9v_A Aspartate aminotransfer 99.9 4.2E-21 1.4E-25 229.8 25.8 311 33-368 14-353 (392)
51 2o0r_A RV0858C (N-succinyldiam 99.9 4.9E-21 1.7E-25 231.1 26.4 343 5-365 4-377 (411)
52 1iug_A Putative aspartate amin 99.9 6E-21 2.1E-25 224.7 26.2 308 30-368 3-330 (352)
53 3kgw_A Alanine-glyoxylate amin 99.9 4.1E-21 1.4E-25 229.6 24.9 315 28-366 23-367 (393)
54 3kax_A Aminotransferase, class 99.9 5.9E-21 2E-25 227.7 25.8 317 27-365 24-366 (383)
55 1j32_A Aspartate aminotransfer 99.9 1.1E-20 3.6E-25 226.2 27.9 315 27-364 30-367 (388)
56 3fvs_A Kynurenine--oxoglutarat 99.9 7.6E-21 2.6E-25 230.1 26.9 348 5-365 7-403 (422)
57 3b46_A Aminotransferase BNA3; 99.9 4.1E-21 1.4E-25 234.5 23.7 325 27-365 57-428 (447)
58 3g0t_A Putative aminotransfera 99.9 2.6E-20 8.8E-25 226.5 30.5 321 27-366 44-418 (437)
59 2x5d_A Probable aminotransfera 99.9 8.7E-21 3E-25 229.0 25.6 319 27-365 37-379 (412)
60 2dou_A Probable N-succinyldiam 99.9 7.6E-21 2.6E-25 226.4 24.6 316 27-365 25-359 (376)
61 3e2y_A Kynurenine-oxoglutarate 99.9 1.1E-20 3.7E-25 227.7 26.2 326 27-365 23-394 (410)
62 2o1b_A Aminotransferase, class 99.9 1.9E-20 6.3E-25 225.6 27.4 317 28-365 48-384 (404)
63 2ch1_A 3-hydroxykynurenine tra 99.9 2.6E-20 9E-25 223.2 28.3 311 30-365 20-361 (396)
64 1v2d_A Glutamine aminotransfer 99.9 1.5E-20 5.3E-25 224.2 26.1 330 6-365 5-352 (381)
65 3fdb_A Beta C-S lyase, putativ 99.9 1.6E-20 5.3E-25 223.6 25.9 315 26-365 22-357 (377)
66 3f0h_A Aminotransferase; RER07 99.9 1.8E-20 6.2E-25 222.9 26.1 313 28-368 19-356 (376)
67 3jtx_A Aminotransferase; NP_28 99.9 2E-20 6.9E-25 224.3 26.5 318 27-365 30-379 (396)
68 3ly1_A Putative histidinol-pho 99.9 5.4E-20 1.9E-24 217.0 29.8 301 27-364 16-333 (354)
69 2bwn_A 5-aminolevulinate synth 99.9 1.9E-20 6.6E-25 225.0 26.2 307 40-368 62-382 (401)
70 3euc_A Histidinol-phosphate am 99.9 7.2E-20 2.4E-24 217.2 30.5 305 27-364 30-349 (367)
71 3ffh_A Histidinol-phosphate am 99.9 1.1E-19 3.8E-24 215.2 31.6 300 27-364 32-347 (363)
72 3qgu_A LL-diaminopimelate amin 99.9 2.4E-20 8.3E-25 227.8 26.7 317 27-365 69-421 (449)
73 1yiz_A Kynurenine aminotransfe 99.9 5.9E-20 2E-24 222.9 29.9 348 6-365 17-410 (429)
74 3aow_A Putative uncharacterize 99.9 3.8E-20 1.3E-24 225.8 28.1 323 27-366 76-426 (448)
75 1t3i_A Probable cysteine desul 99.9 1E-19 3.4E-24 219.7 31.5 329 29-369 29-396 (420)
76 3get_A Histidinol-phosphate am 99.9 3.9E-20 1.3E-24 219.3 27.3 301 27-364 30-348 (365)
77 1c7n_A Cystalysin; transferase 99.9 3.2E-20 1.1E-24 222.9 26.7 333 11-366 14-375 (399)
78 1m32_A 2-aminoethylphosphonate 99.9 4.3E-20 1.5E-24 218.4 27.3 310 29-368 5-347 (366)
79 1o4s_A Aspartate aminotransfer 99.9 4.2E-20 1.4E-24 221.3 27.6 310 27-365 41-370 (389)
80 4hvk_A Probable cysteine desul 99.9 2.2E-20 7.5E-25 222.1 24.6 318 34-369 7-356 (382)
81 1xi9_A Putative transaminase; 99.9 1.6E-20 5.6E-25 226.1 23.8 318 26-364 37-383 (406)
82 1kmj_A Selenocysteine lyase; p 99.9 1E-19 3.4E-24 218.5 30.1 328 29-368 24-387 (406)
83 1eg5_A Aminotransferase; PLP-d 99.9 4.4E-20 1.5E-24 219.9 26.6 319 37-369 11-359 (384)
84 4eb5_A Probable cysteine desul 99.9 5.5E-20 1.9E-24 219.0 27.3 316 35-368 8-355 (382)
85 1d2f_A MALY protein; aminotran 99.9 6.5E-20 2.2E-24 219.5 27.9 318 28-365 29-370 (390)
86 3dyd_A Tyrosine aminotransfera 99.9 6.9E-20 2.4E-24 222.3 28.3 313 28-364 55-404 (427)
87 2z61_A Probable aspartate amin 99.9 5.2E-20 1.8E-24 218.7 26.6 308 27-364 29-351 (370)
88 3ffr_A Phosphoserine aminotran 99.8 7.3E-20 2.5E-24 216.1 26.5 313 28-368 4-346 (362)
89 3ei9_A LL-diaminopimelate amin 99.8 4.2E-20 1.4E-24 224.4 24.8 320 28-365 57-409 (432)
90 3piu_A 1-aminocyclopropane-1-c 99.8 5.3E-20 1.8E-24 223.8 25.3 323 29-366 40-413 (435)
91 3tcm_A Alanine aminotransferas 99.8 2.3E-19 7.8E-24 222.0 31.4 314 39-364 107-474 (500)
92 3cq5_A Histidinol-phosphate am 99.8 8.6E-19 2.9E-23 208.2 34.8 305 29-364 32-349 (369)
93 2e7j_A SEP-tRNA:Cys-tRNA synth 99.8 1.2E-20 4E-25 224.0 18.5 308 36-366 18-349 (371)
94 1elu_A L-cysteine/L-cystine C- 99.8 4.7E-20 1.6E-24 220.3 23.7 321 28-368 16-374 (390)
95 3f9t_A TDC, L-tyrosine decarbo 99.8 2.5E-19 8.6E-24 214.1 30.0 308 34-368 37-380 (397)
96 3op7_A Aminotransferase class 99.8 1.7E-19 5.7E-24 214.7 28.3 282 65-366 59-353 (375)
97 3cai_A Possible aminotransfera 99.8 2.1E-19 7E-24 216.2 28.7 323 29-368 27-391 (406)
98 2zc0_A Alanine glyoxylate tran 99.8 2.9E-19 1E-23 215.0 29.1 323 28-366 35-385 (407)
99 1vp4_A Aminotransferase, putat 99.8 7.7E-20 2.6E-24 221.7 24.0 321 27-366 43-399 (425)
100 1iay_A ACC synthase 2, 1-amino 99.8 2.2E-19 7.5E-24 217.8 27.8 324 28-364 37-406 (428)
101 3ezs_A Aminotransferase ASPB; 99.8 1.1E-19 3.7E-24 216.3 24.5 308 28-365 24-356 (376)
102 2gb3_A Aspartate aminotransfer 99.8 5.5E-20 1.9E-24 221.8 22.1 316 27-364 43-382 (409)
103 2r2n_A Kynurenine/alpha-aminoa 99.8 2E-19 6.8E-24 218.1 27.0 288 68-365 77-404 (425)
104 2bkw_A Alanine-glyoxylate amin 99.8 5.1E-19 1.8E-23 210.8 30.0 309 28-364 5-359 (385)
105 2zyj_A Alpha-aminodipate amino 99.8 1E-19 3.6E-24 218.4 23.8 316 27-366 32-374 (397)
106 3ele_A Amino transferase; RER0 99.8 1.6E-19 5.5E-24 216.7 25.4 313 27-364 35-376 (398)
107 1bw0_A TAT, protein (tyrosine 99.8 2.2E-19 7.4E-24 216.9 25.8 319 28-364 34-393 (416)
108 3p1t_A Putative histidinol-pho 99.8 5.8E-19 2E-23 206.6 28.0 297 25-364 14-318 (337)
109 3hdo_A Histidinol-phosphate am 99.8 6.4E-19 2.2E-23 208.6 28.5 298 28-364 27-336 (360)
110 3t18_A Aminotransferase class 99.8 2.1E-19 7.1E-24 216.9 24.3 314 28-370 38-398 (413)
111 3ihj_A Alanine aminotransferas 99.8 2.1E-19 7.2E-24 222.0 24.5 311 39-364 102-473 (498)
112 3ftb_A Histidinol-phosphate am 99.8 8.9E-19 3E-23 207.1 28.4 298 27-364 26-342 (361)
113 3lvm_A Cysteine desulfurase; s 99.8 1.9E-19 6.6E-24 217.7 23.2 327 27-368 21-381 (423)
114 3rq1_A Aminotransferase class 99.8 2.6E-19 8.8E-24 216.5 23.6 309 28-365 39-395 (418)
115 1jg8_A L-ALLO-threonine aldola 99.8 9.6E-20 3.3E-24 214.2 18.7 308 29-368 5-328 (347)
116 1fg7_A Histidinol phosphate am 99.8 8.1E-19 2.8E-23 207.5 26.7 293 28-364 30-339 (356)
117 3hvy_A Cystathionine beta-lyas 99.8 2.3E-19 7.7E-24 215.7 21.3 303 11-334 16-353 (427)
118 3i16_A Aluminum resistance pro 99.8 2E-19 7E-24 216.1 20.0 304 14-335 21-354 (427)
119 3ke3_A Putative serine-pyruvat 99.8 1.8E-18 6E-23 206.4 27.4 290 69-370 31-360 (379)
120 1sxj_A Activator 1 95 kDa subu 99.8 1.9E-19 6.6E-24 222.8 19.6 231 379-641 27-294 (516)
121 3pj0_A LMO0305 protein; struct 99.8 2E-19 7E-24 212.5 19.0 316 25-368 11-341 (359)
122 3vax_A Putative uncharacterize 99.8 2.3E-19 7.8E-24 215.3 18.5 296 34-344 27-344 (400)
123 2gqf_A Hypothetical protein HI 99.8 5.1E-22 1.8E-26 238.0 -4.8 252 805-1098 107-399 (401)
124 3lws_A Aromatic amino acid bet 99.8 2.2E-19 7.4E-24 212.2 17.7 309 33-367 16-337 (357)
125 3uk6_A RUVB-like 2; hexameric 99.8 1.5E-18 5.2E-23 206.1 24.4 239 379-623 31-329 (368)
126 3dr4_A Putative perosamine syn 99.8 1.9E-18 6.5E-23 206.9 25.3 295 27-348 22-341 (391)
127 3asa_A LL-diaminopimelate amin 99.8 2.4E-18 8.2E-23 206.8 25.7 309 28-363 34-372 (400)
128 3vp6_A Glutamate decarboxylase 99.8 5E-18 1.7E-22 210.2 28.7 293 65-366 127-484 (511)
129 1o69_A Aminotransferase; struc 99.8 7.4E-18 2.5E-22 202.1 29.2 288 36-347 7-334 (394)
130 1mdo_A ARNB aminotransferase; 99.8 3.5E-18 1.2E-22 204.5 26.0 288 29-347 10-332 (393)
131 3hbx_A GAD 1, glutamate decarb 99.8 9E-18 3.1E-22 207.6 29.7 318 37-370 66-428 (502)
132 1wyu_B Glycine dehydrogenase s 99.8 6.4E-18 2.2E-22 207.7 28.0 287 68-369 102-424 (474)
133 2fnu_A Aminotransferase; prote 99.8 1.9E-18 6.4E-23 205.3 22.5 304 35-368 7-354 (375)
134 4f4e_A Aromatic-amino-acid ami 99.8 1.6E-18 5.3E-23 209.9 21.6 323 4-343 24-394 (420)
135 3nyt_A Aminotransferase WBPE; 99.8 7.2E-19 2.5E-23 208.8 18.0 284 32-346 7-310 (367)
136 2x5f_A Aspartate_tyrosine_phen 99.8 1.6E-18 5.6E-23 210.3 21.3 315 27-365 47-409 (430)
137 1lc5_A COBD, L-threonine-O-3-p 99.8 1.2E-17 4.1E-22 197.9 28.1 302 27-365 24-342 (364)
138 3pfi_A Holliday junction ATP-d 99.8 3.2E-18 1.1E-22 200.8 22.9 209 379-622 17-252 (338)
139 1v72_A Aldolase; PLP-dependent 99.8 4.1E-18 1.4E-22 200.7 23.9 306 28-368 8-335 (356)
140 2dgk_A GAD-beta, GADB, glutama 99.8 1.5E-17 5.1E-22 203.3 29.4 314 37-369 52-417 (452)
141 3f6t_A Aspartate aminotransfer 99.8 4.3E-19 1.5E-23 221.0 15.6 317 30-366 106-506 (533)
142 3frk_A QDTB; aminotransferase, 99.8 9.6E-19 3.3E-23 208.1 17.7 278 37-345 13-310 (373)
143 2c0r_A PSAT, phosphoserine ami 99.8 1.9E-18 6.3E-23 204.7 20.0 312 29-368 5-343 (362)
144 2aeu_A Hypothetical protein MJ 99.8 1.2E-17 4.1E-22 198.8 27.0 311 15-366 14-350 (374)
145 1b9h_A AHBA synthase, protein 99.8 1.1E-17 3.8E-22 199.9 26.7 284 38-348 14-326 (388)
146 3if2_A Aminotransferase; YP_26 99.8 6.7E-18 2.3E-22 205.8 24.7 332 27-365 31-421 (444)
147 3ju7_A Putative PLP-dependent 99.8 1.5E-17 5.2E-22 198.0 27.1 278 41-346 16-320 (377)
148 3mad_A Sphingosine-1-phosphate 99.8 4.1E-17 1.4E-21 202.8 32.0 285 66-369 132-451 (514)
149 3b8x_A WBDK, pyridoxamine 5-ph 99.8 5E-17 1.7E-21 194.5 31.7 287 32-345 6-336 (390)
150 4e1o_A HDC, histidine decarbox 99.8 7E-18 2.4E-22 207.6 24.1 291 65-368 110-459 (481)
151 2c9o_A RUVB-like 1; hexameric 99.8 7.6E-18 2.6E-22 205.4 24.1 123 501-624 297-437 (456)
152 3e9k_A Kynureninase; kynurenin 99.8 3.7E-18 1.3E-22 209.4 21.4 277 74-368 112-443 (465)
153 3fkd_A L-threonine-O-3-phospha 99.8 1.9E-17 6.4E-22 195.1 25.7 296 27-364 15-323 (350)
154 3jzl_A Putative cystathionine 99.8 3.4E-18 1.2E-22 204.7 19.5 276 41-335 32-337 (409)
155 2oga_A Transaminase; PLP-depen 99.8 4.5E-18 1.5E-22 204.3 20.0 289 27-344 30-337 (399)
156 1uu1_A Histidinol-phosphate am 99.8 2.6E-17 8.7E-22 192.8 25.8 288 28-365 20-320 (335)
157 3k40_A Aromatic-L-amino-acid d 99.8 1.4E-17 4.7E-22 204.5 24.4 289 65-368 105-452 (475)
158 3g7q_A Valine-pyruvate aminotr 99.8 9.1E-18 3.1E-22 202.6 22.4 331 27-365 31-394 (417)
159 2c81_A Glutamine-2-deoxy-scyll 99.8 4E-17 1.4E-21 197.3 28.1 292 35-347 10-344 (418)
160 3ez1_A Aminotransferase MOCR f 99.8 1.3E-17 4.5E-22 201.8 23.5 340 6-366 5-396 (423)
161 3uwc_A Nucleotide-sugar aminot 99.8 8.6E-18 3E-22 199.7 21.2 284 29-345 8-313 (374)
162 3ppl_A Aspartate aminotransfer 99.8 2.1E-17 7E-22 200.4 24.6 288 64-366 73-401 (427)
163 7aat_A Aspartate aminotransfer 99.8 1.5E-17 5.1E-22 199.7 23.1 311 28-369 29-387 (401)
164 1svv_A Threonine aldolase; str 99.8 6.1E-18 2.1E-22 199.4 19.3 307 29-368 15-340 (359)
165 3b1d_A Betac-S lyase; HET: PLP 99.6 3.6E-20 1.2E-24 222.0 0.0 317 28-365 32-374 (392)
166 3mc6_A Sphingosine-1-phosphate 99.8 7E-17 2.4E-21 199.8 29.3 303 41-364 78-416 (497)
167 2okj_A Glutamate decarboxylase 99.8 4.6E-17 1.6E-21 201.7 27.1 294 65-368 124-484 (504)
168 2po3_A 4-dehydrase; external a 99.8 6.1E-17 2.1E-21 196.1 26.9 287 31-345 20-330 (424)
169 2i0z_A NAD(FAD)-utilizing dehy 99.8 2.7E-20 9.1E-25 227.0 -3.5 264 808-1102 135-444 (447)
170 1yaa_A Aspartate aminotransfer 99.8 1.5E-17 5.1E-22 200.6 20.5 306 27-365 29-391 (412)
171 3fsl_A Aromatic-amino-acid ami 99.8 9.2E-18 3.2E-22 201.1 18.6 300 28-343 27-372 (397)
172 1ajs_A Aspartate aminotransfer 99.8 2.3E-17 7.8E-22 198.9 22.0 309 27-365 30-391 (412)
173 1hqc_A RUVB; extended AAA-ATPa 99.8 3.7E-17 1.3E-21 190.5 23.0 207 382-622 3-236 (324)
174 1qz9_A Kynureninase; kynurenin 99.7 3.6E-17 1.2E-21 197.3 23.3 306 30-368 30-384 (416)
175 3meb_A Aspartate aminotransfer 99.7 4.2E-17 1.4E-21 199.0 23.5 276 65-368 90-427 (448)
176 3d6k_A Putative aminotransfera 99.7 1.6E-17 5.3E-22 201.2 19.4 339 7-365 13-398 (422)
177 3ht4_A Aluminum resistance pro 99.7 7.6E-18 2.6E-22 203.5 16.4 248 75-336 67-344 (431)
178 3k7y_A Aspartate aminotransfer 99.7 1.8E-17 6.1E-22 198.8 18.8 334 1-369 1-389 (405)
179 4eu1_A Mitochondrial aspartate 99.7 2.8E-17 9.4E-22 198.1 20.3 315 6-343 18-383 (409)
180 1in4_A RUVB, holliday junction 99.7 1E-16 3.5E-21 187.4 24.5 211 378-623 12-249 (334)
181 1js3_A DDC;, DOPA decarboxylas 99.7 8.3E-17 2.8E-21 198.5 24.6 287 65-366 105-453 (486)
182 1w23_A Phosphoserine aminotran 99.7 1.6E-17 5.4E-22 196.2 17.1 309 29-368 4-342 (360)
183 2qma_A Diaminobutyrate-pyruvat 99.7 1.3E-16 4.3E-21 197.4 25.2 313 37-368 110-478 (497)
184 2jis_A Cysteine sulfinic acid 99.7 2.5E-16 8.4E-21 195.6 27.3 250 65-317 140-436 (515)
185 2ay1_A Aroat, aromatic amino a 99.7 3.7E-17 1.3E-21 195.7 19.1 307 28-365 27-376 (394)
186 2q7w_A Aspartate aminotransfer 99.7 3.6E-17 1.2E-21 195.9 18.9 308 28-366 27-380 (396)
187 2ez2_A Beta-tyrosinase, tyrosi 99.7 2.9E-16 1E-20 191.9 26.6 287 65-366 71-410 (456)
188 3a9z_A Selenocysteine lyase; P 99.7 1.5E-16 5.1E-21 193.0 23.8 283 28-322 18-352 (432)
189 3bb8_A CDP-4-keto-6-deoxy-D-gl 99.7 6.8E-16 2.3E-20 187.7 29.0 285 35-347 37-379 (437)
190 2z67_A O-phosphoseryl-tRNA(SEC 99.7 1E-16 3.5E-21 196.0 21.8 259 70-339 130-406 (456)
191 2zy4_A L-aspartate beta-decarb 99.7 9.9E-17 3.4E-21 199.7 22.0 313 29-365 106-502 (546)
192 2x3l_A ORN/Lys/Arg decarboxyla 99.7 9.5E-17 3.2E-21 195.5 19.7 270 76-370 60-338 (446)
193 3m5u_A Phosphoserine aminotran 99.7 5.1E-16 1.7E-20 182.5 24.3 312 28-369 5-343 (361)
194 1qgn_A Protein (cystathionine 99.7 5.7E-16 1.9E-20 187.6 25.4 241 75-337 116-380 (445)
195 3e77_A Phosphoserine aminotran 99.7 1.9E-16 6.7E-21 186.7 20.6 310 33-369 18-358 (377)
196 1ax4_A Tryptophanase; tryptoph 99.7 7.8E-16 2.7E-20 188.7 25.4 307 41-366 55-420 (467)
197 1e5e_A MGL, methionine gamma-l 99.7 2.3E-15 8E-20 180.9 28.4 245 77-343 66-336 (404)
198 3ruy_A Ornithine aminotransfer 99.7 6.6E-16 2.3E-20 184.8 23.3 292 39-368 53-376 (392)
199 3bos_A Putative DNA replicatio 99.7 2.1E-16 7E-21 175.4 16.7 209 379-622 15-241 (242)
200 3qm2_A Phosphoserine aminotran 99.7 7.8E-17 2.7E-21 191.2 14.0 314 28-369 27-368 (386)
201 1s0a_A Adenosylmethionine-8-am 99.7 3.9E-15 1.3E-19 180.5 29.3 313 29-369 45-407 (429)
202 3ndn_A O-succinylhomoserine su 99.7 6E-16 2.1E-20 186.3 21.6 243 74-336 82-350 (414)
203 2eh6_A Acoat, acetylornithine 99.7 1.6E-15 5.4E-20 180.2 24.6 292 39-368 45-360 (375)
204 2fyf_A PSAT, phosphoserine ami 99.7 1E-15 3.5E-20 183.7 23.0 307 28-368 40-380 (398)
205 1cs1_A CGS, protein (cystathio 99.7 1E-14 3.5E-19 174.2 31.0 245 76-343 55-324 (386)
206 1pff_A Methionine gamma-lyase; 99.7 1.9E-15 6.4E-20 176.5 23.9 244 78-344 3-272 (331)
207 2oat_A Ornithine aminotransfer 99.7 1.3E-15 4.4E-20 185.3 23.3 305 29-368 78-421 (439)
208 1c4k_A Protein (ornithine deca 99.7 9.2E-16 3.2E-20 195.2 22.9 280 77-369 177-549 (730)
209 3ri6_A O-acetylhomoserine sulf 99.7 1.5E-15 5.2E-20 183.3 23.6 246 68-340 81-370 (430)
210 1vef_A Acetylornithine/acetyl- 99.7 1.1E-15 3.7E-20 183.1 22.1 295 38-368 61-379 (395)
211 3qhx_A Cystathionine gamma-syn 99.7 5E-16 1.7E-20 186.0 19.1 208 75-302 68-283 (392)
212 1gc0_A Methionine gamma-lyase; 99.7 4.9E-15 1.7E-19 177.8 27.6 247 75-343 67-338 (398)
213 2cb1_A O-acetyl homoserine sul 99.7 4.6E-15 1.6E-19 178.9 27.2 245 76-344 59-354 (412)
214 2rfv_A Methionine gamma-lyase; 99.7 5.7E-16 1.9E-20 185.9 18.8 250 73-344 64-341 (398)
215 1z7d_A Ornithine aminotransfer 99.7 1.6E-15 5.4E-20 184.2 22.7 295 39-368 82-411 (433)
216 3acz_A Methionine gamma-lyase; 99.7 5E-15 1.7E-19 177.1 25.4 245 76-344 62-331 (389)
217 2qp9_X Vacuolar protein sortin 99.7 9.1E-16 3.1E-20 180.7 18.1 195 380-607 40-267 (355)
218 2oqx_A Tryptophanase; lyase, p 99.7 9.6E-16 3.3E-20 187.9 19.0 308 41-368 53-424 (467)
219 3eie_A Vacuolar protein sortin 99.7 8.8E-16 3E-20 178.7 17.6 192 381-605 8-232 (322)
220 3nx3_A Acoat, acetylornithine 99.7 4.3E-15 1.5E-19 177.9 24.1 307 28-369 37-378 (395)
221 2fq6_A Cystathionine beta-lyas 99.7 5.2E-15 1.8E-19 178.0 24.6 241 77-338 86-352 (415)
222 3i4j_A Aminotransferase, class 99.7 3.6E-15 1.2E-19 180.8 23.1 319 28-369 30-411 (430)
223 2eo5_A 419AA long hypothetical 99.7 4.9E-15 1.7E-19 179.1 24.1 306 29-369 44-401 (419)
224 2vyc_A Biodegradative arginine 99.6 7.6E-15 2.6E-19 188.6 27.0 221 77-302 209-464 (755)
225 1sff_A 4-aminobutyrate aminotr 99.6 4.3E-15 1.5E-19 179.7 23.2 299 39-368 58-406 (426)
226 4adb_A Succinylornithine trans 99.6 2.7E-15 9.3E-20 180.2 20.7 294 40-368 57-382 (406)
227 3b9p_A CG5977-PA, isoform A; A 99.6 3.1E-15 1.1E-19 172.0 19.7 212 380-624 10-272 (297)
228 3cog_A Cystathionine gamma-lya 99.6 6E-15 2E-19 177.2 22.8 247 69-343 67-339 (403)
229 3vfd_A Spastin; ATPase, microt 99.6 2.3E-15 7.8E-20 179.9 18.4 193 379-604 103-329 (389)
230 3d8b_A Fidgetin-like protein 1 99.6 4.2E-15 1.4E-19 175.3 20.4 194 379-605 72-299 (357)
231 3tfu_A Adenosylmethionine-8-am 99.6 7.6E-15 2.6E-19 179.3 23.1 312 28-368 76-435 (457)
232 4b4t_J 26S protease regulatory 99.6 7.5E-15 2.6E-19 171.5 21.5 203 386-622 143-387 (405)
233 1n8p_A Cystathionine gamma-lya 99.6 4.5E-15 1.5E-19 177.7 19.8 206 75-303 57-275 (393)
234 2pb2_A Acetylornithine/succiny 99.6 6E-15 2E-19 178.4 20.8 294 39-368 74-400 (420)
235 3dxv_A Alpha-amino-epsilon-cap 99.6 8.9E-15 3E-19 177.9 22.2 303 39-369 60-408 (439)
236 3bwn_A AT1G70560, L-tryptophan 99.6 3.2E-15 1.1E-19 178.9 17.5 306 27-365 22-368 (391)
237 3n5m_A Adenosylmethionine-8-am 99.6 5.7E-14 1.9E-18 171.5 27.9 317 29-369 51-435 (452)
238 2v1u_A Cell division control p 99.6 4.5E-15 1.5E-19 176.9 17.7 238 380-624 11-276 (387)
239 2qby_B CDC6 homolog 3, cell di 99.6 4.7E-15 1.6E-19 176.9 17.8 217 380-624 12-270 (384)
240 3a8u_X Omega-amino acid--pyruv 99.6 2.1E-14 7.3E-19 175.0 24.0 302 39-368 67-429 (449)
241 2ord_A Acoat, acetylornithine 99.6 4.1E-15 1.4E-19 178.3 17.0 293 39-368 57-379 (397)
242 3n75_A LDC, lysine decarboxyla 99.6 1.6E-14 5.3E-19 182.3 22.9 217 78-302 200-442 (715)
243 1xwi_A SKD1 protein; VPS4B, AA 99.6 1E-14 3.4E-19 169.4 19.5 193 383-607 4-229 (322)
244 4b4t_I 26S protease regulatory 99.6 1.5E-14 5.2E-19 169.0 21.0 204 384-622 175-421 (437)
245 1fnn_A CDC6P, cell division co 99.6 1.7E-14 5.8E-19 172.2 22.1 237 380-625 9-275 (389)
246 1ibj_A CBL, cystathionine beta 99.6 1.3E-14 4.4E-19 177.1 21.1 164 74-252 134-305 (464)
247 1ofh_A ATP-dependent HSL prote 99.6 4.1E-15 1.4E-19 171.8 15.6 205 391-624 15-299 (310)
248 1lv7_A FTSH; alpha/beta domain 99.6 2.8E-14 9.6E-19 160.4 21.7 208 381-623 2-251 (257)
249 1zod_A DGD, 2,2-dialkylglycine 99.6 2.8E-14 9.6E-19 173.1 22.9 304 40-369 61-415 (433)
250 3gju_A Putative aminotransfera 99.6 2.1E-13 7.3E-18 166.8 30.8 314 29-369 53-439 (460)
251 3syl_A Protein CBBX; photosynt 99.6 1.1E-14 3.6E-19 168.5 17.8 186 392-606 32-260 (309)
252 4b4t_M 26S protease regulatory 99.6 2E-14 6.7E-19 170.7 19.9 205 386-624 176-422 (434)
253 3h4m_A Proteasome-activating n 99.6 2.5E-14 8.5E-19 163.4 19.5 205 385-623 11-257 (285)
254 2zan_A Vacuolar protein sortin 99.6 1.2E-14 3.9E-19 176.3 17.1 196 380-607 123-351 (444)
255 3hmu_A Aminotransferase, class 99.6 1.1E-13 3.9E-18 169.5 25.5 313 29-369 57-435 (472)
256 4a6r_A Omega transaminase; tra 99.6 1.6E-13 5.5E-18 167.8 26.7 311 29-369 52-432 (459)
257 4ffc_A 4-aminobutyrate aminotr 99.6 3.6E-14 1.2E-18 173.2 20.8 304 40-369 82-432 (453)
258 4b4t_L 26S protease subunit RP 99.6 4.5E-14 1.5E-18 167.8 20.6 203 386-622 176-420 (437)
259 1wyu_A Glycine dehydrogenase ( 99.6 6.7E-14 2.3E-18 170.1 22.4 279 68-369 103-423 (438)
260 4b4t_H 26S protease regulatory 99.6 5.2E-14 1.8E-18 166.2 20.4 202 387-622 205-448 (467)
261 4h51_A Aspartate aminotransfer 99.6 1.6E-13 5.6E-18 164.5 24.7 325 14-368 31-400 (420)
262 3i5t_A Aminotransferase; pyrid 99.6 2.4E-13 8.3E-18 166.8 26.6 311 29-369 56-437 (476)
263 2z4s_A Chromosomal replication 99.6 2.6E-14 8.9E-19 172.9 17.6 212 385-625 98-333 (440)
264 3oks_A 4-aminobutyrate transam 99.6 8.6E-14 2.9E-18 169.8 22.2 304 40-369 79-434 (451)
265 4b4t_K 26S protease regulatory 99.6 1.1E-13 3.7E-18 164.4 22.1 202 387-622 168-412 (428)
266 3nmy_A Xometc, cystathionine g 99.5 1.6E-13 5.5E-18 164.4 22.9 242 76-341 70-338 (400)
267 3dod_A Adenosylmethionine-8-am 99.5 4.3E-13 1.5E-17 163.5 26.9 302 39-369 61-426 (448)
268 2hox_A ALLIIN lyase 1; cystein 99.5 1E-14 3.6E-19 176.5 11.9 300 28-365 57-406 (427)
269 1g8p_A Magnesium-chelatase 38 99.5 8.1E-14 2.8E-18 164.0 18.4 242 385-627 18-325 (350)
270 2ctz_A O-acetyl-L-homoserine s 99.5 7.7E-14 2.6E-18 168.6 18.6 243 76-339 61-360 (421)
271 2qz4_A Paraplegin; AAA+, SPG7, 99.5 9.6E-14 3.3E-18 156.3 17.7 203 387-622 2-247 (262)
272 3l44_A Glutamate-1-semialdehyd 99.5 2.5E-13 8.7E-18 164.7 22.6 289 28-344 56-400 (434)
273 2ce7_A Cell division protein F 99.5 2E-13 6.8E-18 164.9 20.5 202 387-623 12-255 (476)
274 2epj_A Glutamate-1-semialdehyd 99.5 9.9E-14 3.4E-18 168.4 18.0 291 29-344 58-401 (434)
275 3k28_A Glutamate-1-semialdehyd 99.5 5E-13 1.7E-17 161.9 24.1 290 28-344 54-397 (429)
276 3fq8_A Glutamate-1-semialdehyd 99.5 7.4E-13 2.5E-17 160.3 25.2 293 28-344 53-397 (427)
277 4e77_A Glutamate-1-semialdehyd 99.5 3.2E-13 1.1E-17 163.7 21.9 293 28-344 54-399 (429)
278 1l8q_A Chromosomal replication 99.5 9.6E-14 3.3E-18 161.7 16.1 188 387-607 7-214 (324)
279 2r44_A Uncharacterized protein 99.5 2.1E-13 7.1E-18 159.3 18.7 219 379-623 15-296 (331)
280 2qby_A CDC6 homolog 1, cell di 99.5 4.4E-13 1.5E-17 159.5 21.1 237 380-624 12-272 (386)
281 2cjg_A L-lysine-epsilon aminot 99.5 5E-13 1.7E-17 162.9 20.8 299 39-369 71-431 (449)
282 3cf0_A Transitional endoplasmi 99.5 4.4E-13 1.5E-17 154.2 19.2 191 384-608 8-236 (301)
283 3te6_A Regulatory protein SIR3 99.5 8E-14 2.7E-18 159.4 12.8 201 382-608 13-286 (318)
284 4fcw_A Chaperone protein CLPB; 99.5 1.1E-13 3.9E-18 159.9 13.7 201 390-606 16-276 (311)
285 2e7u_A Glutamate-1-semialdehyd 99.5 4.1E-13 1.4E-17 162.4 18.4 291 29-344 54-397 (424)
286 2cy8_A D-phgat, D-phenylglycin 99.5 9.7E-13 3.3E-17 160.6 20.7 276 39-342 74-405 (453)
287 3bc8_A O-phosphoseryl-tRNA(SEC 99.4 3.1E-13 1.1E-17 161.0 13.6 233 69-308 94-347 (450)
288 3pxg_A Negative regulator of g 99.4 6E-13 2E-17 162.4 16.2 198 380-607 169-384 (468)
289 2r62_A Cell division protease 99.4 1.7E-14 5.9E-19 163.2 2.4 214 383-624 3-253 (268)
290 2bjv_A PSP operon transcriptio 99.4 1.1E-12 3.9E-17 147.9 15.3 203 388-617 3-250 (265)
291 3hl2_A O-phosphoseryl-tRNA(SEC 99.4 5.3E-13 1.8E-17 156.2 12.1 260 75-343 119-404 (501)
292 3hu3_A Transitional endoplasmi 99.4 2.2E-12 7.5E-17 157.2 15.7 191 384-608 197-422 (489)
293 1um8_A ATP-dependent CLP prote 99.4 3.2E-12 1.1E-16 152.0 15.8 202 392-622 22-363 (376)
294 2dhr_A FTSH; AAA+ protein, hex 99.4 4.3E-12 1.5E-16 154.1 16.5 206 386-622 26-269 (499)
295 1ixz_A ATP-dependent metallopr 99.4 1.4E-11 4.7E-16 138.1 19.1 204 383-621 8-253 (254)
296 1ohv_A 4-aminobutyrate aminotr 99.4 3.8E-12 1.3E-16 155.9 15.5 302 39-369 80-454 (472)
297 3m6a_A ATP-dependent protease 99.4 1.3E-12 4.6E-17 161.9 11.5 213 389-624 79-341 (543)
298 1d2n_A N-ethylmaleimide-sensit 99.3 8.1E-12 2.8E-16 141.5 15.4 180 391-608 33-249 (272)
299 4ao9_A Beta-phenylalanine amin 99.3 8.7E-11 3E-15 141.5 23.8 242 39-301 104-360 (454)
300 2yky_A Beta-transaminase; tran 99.0 1.8E-13 6.1E-18 166.1 0.0 293 27-344 100-432 (465)
301 1iy2_A ATP-dependent metallopr 99.3 3.5E-11 1.2E-15 136.8 18.5 202 385-621 34-277 (278)
302 1r6b_X CLPA protein; AAA+, N-t 99.3 1.6E-11 5.4E-16 159.5 16.5 217 380-622 175-431 (758)
303 1r6b_X CLPA protein; AAA+, N-t 99.3 2.1E-11 7.2E-16 158.4 17.0 199 391-606 458-713 (758)
304 1ojl_A Transcriptional regulat 99.3 6.3E-11 2.1E-15 136.2 18.9 213 391-619 2-247 (304)
305 3k1j_A LON protease, ATP-depen 99.3 6.1E-12 2.1E-16 158.5 10.6 233 382-621 32-372 (604)
306 3pxi_A Negative regulator of g 99.3 9.7E-12 3.3E-16 161.3 12.4 198 380-607 169-384 (758)
307 1jbk_A CLPB protein; beta barr 99.3 1.2E-11 4.3E-16 131.2 10.8 164 379-567 10-194 (195)
308 3pxi_A Negative regulator of g 99.2 1.1E-11 3.8E-16 160.7 11.8 186 390-605 490-721 (758)
309 1qvr_A CLPB protein; coiled co 99.2 1.2E-11 4.2E-16 162.0 12.2 205 379-608 158-392 (854)
310 3cf2_A TER ATPase, transitiona 99.2 2.5E-11 8.5E-16 154.2 14.2 187 386-606 199-420 (806)
311 1qvr_A CLPB protein; coiled co 99.2 1E-11 3.5E-16 162.8 9.3 202 389-606 556-817 (854)
312 2cul_A Glucose-inhibited divis 99.2 1.6E-11 5.6E-16 135.5 9.2 118 805-926 66-189 (232)
313 2p65_A Hypothetical protein PF 99.2 3.2E-11 1.1E-15 127.6 8.9 155 380-559 11-187 (187)
314 3hws_A ATP-dependent CLP prote 99.2 5E-11 1.7E-15 140.9 11.3 201 392-621 16-346 (363)
315 2x8a_A Nuclear valosin-contain 99.2 9.3E-10 3.2E-14 124.4 20.3 206 386-624 5-264 (274)
316 3cf2_A TER ATPase, transitiona 99.2 2.5E-11 8.4E-16 154.2 8.0 185 387-605 473-695 (806)
317 1w5s_A Origin recognition comp 99.1 5.4E-10 1.9E-14 134.2 19.1 235 381-622 15-291 (412)
318 1g41_A Heat shock protein HSLU 99.1 7.2E-10 2.5E-14 131.9 17.6 126 501-626 252-435 (444)
319 3nbx_X ATPase RAVA; AAA+ ATPas 99.1 1.1E-09 3.9E-14 133.1 16.9 255 391-676 22-329 (500)
320 4atq_A 4-aminobutyrate transam 99.1 2.6E-08 9E-13 120.4 27.8 305 37-366 79-435 (456)
321 3t15_A Ribulose bisphosphate c 99.0 2.9E-09 9.9E-14 121.7 18.3 153 411-595 34-221 (293)
322 3nlc_A Uncharacterized protein 98.9 1.5E-09 5.3E-14 133.7 6.9 89 1012-1102 445-543 (549)
323 3n70_A Transport activator; si 98.8 7.2E-09 2.5E-13 105.3 9.5 133 392-558 2-144 (145)
324 3f9v_A Minichromosome maintena 98.8 4E-09 1.4E-13 131.8 9.1 210 390-621 294-584 (595)
325 4e3q_A Pyruvate transaminase; 98.8 4.6E-07 1.6E-11 110.0 26.8 251 37-302 82-383 (473)
326 1ypw_A Transitional endoplasmi 98.8 1.6E-08 5.5E-13 130.9 14.7 178 384-595 197-408 (806)
327 2qen_A Walker-type ATPase; unk 98.7 8.7E-08 3E-12 112.0 15.8 201 389-602 10-247 (350)
328 3dzd_A Transcriptional regulat 98.7 5.6E-07 1.9E-11 105.9 21.5 190 391-610 129-363 (368)
329 1ypw_A Transitional endoplasmi 98.7 5.8E-10 2E-14 144.3 -5.3 194 386-607 472-697 (806)
330 4a0g_A Adenosylmethionine-8-am 98.6 1.4E-07 4.7E-12 122.2 15.0 167 182-368 617-810 (831)
331 3co5_A Putative two-component 98.6 2.3E-08 8E-13 101.3 5.3 129 392-558 5-142 (143)
332 1jql_B DNA polymerase III, del 98.6 1.4E-07 4.7E-12 95.1 9.8 125 402-555 8-139 (140)
333 1ny5_A Transcriptional regulat 98.5 9.6E-07 3.3E-11 104.8 17.6 202 390-619 136-382 (387)
334 2fna_A Conserved hypothetical 98.5 9.6E-07 3.3E-11 103.3 16.5 197 389-603 11-252 (357)
335 3ec2_A DNA replication protein 98.5 5.1E-07 1.8E-11 95.0 11.4 57 382-438 1-63 (180)
336 1u0j_A DNA replication protein 98.4 8.3E-07 2.8E-11 98.1 12.3 137 399-581 89-260 (267)
337 1tue_A Replication protein E1; 98.2 4.9E-06 1.7E-10 87.7 11.3 118 400-558 45-179 (212)
338 3f8t_A Predicted ATPase involv 98.2 1.5E-05 5E-10 94.1 15.0 202 393-621 215-480 (506)
339 3upu_A ATP-dependent DNA helic 98.1 1.4E-05 4.8E-10 97.1 13.9 60 379-440 12-72 (459)
340 2w58_A DNAI, primosome compone 98.0 3.2E-06 1.1E-10 90.6 5.7 58 381-438 15-79 (202)
341 2kjq_A DNAA-related protein; s 98.0 4.3E-06 1.5E-10 85.1 6.0 98 413-550 36-139 (149)
342 4akg_A Glutathione S-transfera 97.9 4.6E-05 1.6E-09 108.3 15.3 141 403-574 1260-1434(2695)
343 1kf6_A Fumarate reductase flav 97.9 4.4E-05 1.5E-09 95.7 13.0 82 810-900 137-225 (602)
344 2h88_A Succinate dehydrogenase 97.7 7.2E-05 2.5E-09 93.8 11.1 72 821-901 168-246 (621)
345 1chu_A Protein (L-aspartate ox 97.7 8.7E-05 3E-09 91.9 11.1 80 814-902 145-238 (540)
346 2qgz_A Helicase loader, putati 97.7 2.5E-05 8.6E-10 89.5 5.7 57 382-438 115-177 (308)
347 1qo8_A Flavocytochrome C3 fuma 97.6 0.00017 5.7E-09 90.1 12.4 96 805-902 248-354 (566)
348 1y0p_A Fumarate reductase flav 97.6 0.00022 7.4E-09 89.2 11.9 94 807-901 255-358 (571)
349 2bs2_A Quinol-fumarate reducta 97.5 0.00016 5.5E-09 91.3 10.5 71 821-900 171-249 (660)
350 3gyx_A Adenylylsulfate reducta 97.5 0.00019 6.6E-09 90.6 10.5 85 811-902 170-272 (662)
351 4akg_A Glutathione S-transfera 97.4 0.0026 9E-08 90.7 20.2 168 397-604 632-836 (2695)
352 1ye8_A Protein THEP1, hypothet 97.4 0.00054 1.8E-08 71.7 10.0 72 496-569 96-174 (178)
353 4dgk_A Phytoene dehydrogenase; 97.2 0.00097 3.3E-08 81.7 11.1 52 809-861 223-275 (501)
354 3vkg_A Dynein heavy chain, cyt 97.1 0.0033 1.1E-07 90.2 16.4 174 403-607 1297-1526(3245)
355 1z6t_A APAF-1, apoptotic prote 97.1 0.0082 2.8E-07 75.2 18.6 206 382-601 115-328 (591)
356 2r2a_A Uncharacterized protein 96.9 0.0016 5.5E-08 69.2 8.3 61 498-558 86-153 (199)
357 2orw_A Thymidine kinase; TMTK, 96.8 0.00064 2.2E-08 71.5 4.2 57 499-558 76-139 (184)
358 2a5y_B CED-4; apoptosis; HET: 96.8 0.0098 3.4E-07 73.7 14.9 193 394-600 131-336 (549)
359 3sfz_A APAF-1, apoptotic pepti 96.6 0.025 8.5E-07 77.2 18.5 190 378-600 111-327 (1249)
360 3vkg_A Dynein heavy chain, cyt 96.2 0.12 4E-06 74.7 21.9 170 396-605 590-797 (3245)
361 2b8t_A Thymidine kinase; deoxy 96.0 0.013 4.4E-07 63.3 8.6 111 413-537 12-124 (223)
362 2ywl_A Thioredoxin reductase r 95.9 0.064 2.2E-06 55.5 12.9 54 805-861 54-107 (180)
363 3e1s_A Exodeoxyribonuclease V, 95.8 0.018 6.1E-07 71.4 9.6 26 414-439 205-230 (574)
364 2fz4_A DNA repair protein RAD2 95.5 0.064 2.2E-06 58.5 11.7 22 416-437 111-132 (237)
365 1vt4_I APAF-1 related killer D 95.3 0.095 3.2E-06 67.9 13.4 44 393-436 130-173 (1221)
366 2i3b_A HCR-ntpase, human cance 95.2 0.058 2E-06 56.7 9.4 74 496-571 102-184 (189)
367 2vhj_A Ntpase P4, P4; non- hyd 95.1 0.033 1.1E-06 63.0 7.7 23 414-436 124-146 (331)
368 3dje_A Fructosyl amine: oxygen 95.0 0.025 8.4E-07 67.8 6.8 58 803-861 157-218 (438)
369 4a9w_A Monooxygenase; baeyer-v 94.7 0.41 1.4E-05 54.8 16.0 56 805-862 74-130 (357)
370 2r8r_A Sensor protein; KDPD, P 94.6 0.21 7.2E-06 53.5 12.1 168 414-599 7-202 (228)
371 1d4d_A Flavocytochrome C fumar 94.5 0.068 2.3E-06 66.4 9.3 95 807-902 255-359 (572)
372 1w36_D RECD, exodeoxyribonucle 94.5 0.058 2E-06 67.5 8.5 25 414-438 165-189 (608)
373 2wdq_A Succinate dehydrogenase 94.3 0.081 2.8E-06 65.9 9.2 82 811-902 147-236 (588)
374 1s96_A Guanylate kinase, GMP k 94.2 0.15 5.1E-06 54.9 9.9 25 414-438 17-41 (219)
375 4at0_A 3-ketosteroid-delta4-5a 93.9 0.083 2.8E-06 64.7 8.1 93 809-902 204-306 (510)
376 1g5t_A COB(I)alamin adenosyltr 93.9 0.17 6E-06 52.9 9.3 128 415-550 30-171 (196)
377 3jsk_A Cypbp37 protein; octame 93.7 0.14 4.8E-06 58.8 8.9 73 807-898 160-267 (344)
378 3lw7_A Adenylate kinase relate 93.7 0.23 8E-06 50.5 9.9 24 414-438 2-25 (179)
379 2e4g_A Tryptophan halogenase; 93.5 0.084 2.9E-06 65.3 7.2 60 802-861 189-249 (550)
380 1jnr_A Adenylylsulfate reducta 93.2 0.12 4.2E-06 65.0 8.2 86 811-903 155-258 (643)
381 1xx6_A Thymidine kinase; NESG, 93.2 0.22 7.5E-06 52.3 8.7 26 413-438 8-33 (191)
382 2gjc_A Thiazole biosynthetic e 93.0 0.17 5.7E-06 57.8 8.0 74 780-861 127-236 (326)
383 3a4m_A L-seryl-tRNA(SEC) kinas 92.9 0.24 8.1E-06 54.7 9.0 26 413-438 4-29 (260)
384 1w4r_A Thymidine kinase; type 92.7 0.14 4.9E-06 53.5 6.4 27 412-438 19-46 (195)
385 3cmu_A Protein RECA, recombina 92.4 0.15 5.2E-06 70.6 7.8 26 413-438 1427-1452(2050)
386 2z0h_A DTMP kinase, thymidylat 92.4 0.8 2.7E-05 47.6 11.9 24 415-438 2-25 (197)
387 2zr9_A Protein RECA, recombina 92.3 0.31 1.1E-05 56.3 9.4 25 414-438 62-86 (349)
388 1qhx_A CPT, protein (chloramph 92.3 0.075 2.6E-06 54.8 3.7 26 413-438 3-28 (178)
389 1y56_B Sarcosine oxidase; dehy 92.1 0.18 6.2E-06 58.8 7.1 58 802-861 144-202 (382)
390 2j9r_A Thymidine kinase; TK1, 92.0 0.28 9.7E-06 52.1 7.7 27 413-439 28-54 (214)
391 2pyx_A Tryptophan halogenase; 92.0 0.27 9.2E-06 60.3 8.8 60 802-861 170-230 (526)
392 2ze6_A Isopentenyl transferase 91.8 0.4 1.4E-05 52.7 9.1 25 415-439 3-27 (253)
393 3dl0_A Adenylate kinase; phosp 91.8 0.95 3.2E-05 48.0 11.9 24 416-439 3-26 (216)
394 2cvh_A DNA repair and recombin 91.8 0.67 2.3E-05 49.2 10.6 22 414-435 21-42 (220)
395 3zvl_A Bifunctional polynucleo 91.8 0.15 5E-06 60.7 5.8 27 412-438 257-283 (416)
396 2iut_A DNA translocase FTSK; n 91.8 2.1 7.3E-05 52.1 16.0 68 500-567 344-419 (574)
397 1rp0_A ARA6, thiazole biosynth 91.7 0.49 1.7E-05 52.9 9.8 56 806-861 118-188 (284)
398 3kl4_A SRP54, signal recogniti 91.5 0.41 1.4E-05 56.7 9.2 27 413-439 97-123 (433)
399 2weu_A Tryptophan 5-halogenase 91.4 0.24 8.4E-06 60.4 7.5 59 802-861 168-227 (511)
400 3dm5_A SRP54, signal recogniti 91.4 0.79 2.7E-05 54.3 11.4 27 413-439 100-126 (443)
401 3trf_A Shikimate kinase, SK; a 91.2 0.12 4.1E-06 53.6 3.9 27 413-439 5-31 (185)
402 2e5v_A L-aspartate oxidase; ar 91.1 0.34 1.2E-05 58.5 8.2 82 808-900 120-204 (472)
403 3kb2_A SPBC2 prophage-derived 91.1 0.12 4.3E-06 52.6 3.7 25 415-439 3-27 (173)
404 2p5t_B PEZT; postsegregational 90.9 0.1 3.5E-06 57.5 3.1 28 411-438 30-57 (253)
405 2px0_A Flagellar biosynthesis 90.7 1.2 4.2E-05 50.0 11.9 26 413-438 105-130 (296)
406 1u94_A RECA protein, recombina 90.7 0.51 1.7E-05 54.6 8.8 25 414-438 64-88 (356)
407 4a74_A DNA repair and recombin 90.6 0.52 1.8E-05 50.4 8.4 25 414-438 26-50 (231)
408 2x3n_A Probable FAD-dependent 90.5 0.29 9.8E-06 57.6 6.7 60 802-861 102-163 (399)
409 3hr8_A Protein RECA; alpha and 90.5 0.58 2E-05 54.0 8.9 38 401-438 47-86 (356)
410 3llm_A ATP-dependent RNA helic 90.4 1 3.5E-05 48.6 10.5 31 401-434 67-97 (235)
411 3atr_A Conserved archaeal prot 90.3 0.35 1.2E-05 58.0 7.3 59 802-861 95-159 (453)
412 1ltq_A Polynucleotide kinase; 90.2 0.47 1.6E-05 53.4 7.9 24 414-437 3-26 (301)
413 1vma_A Cell division protein F 90.2 0.54 1.9E-05 53.2 8.2 27 413-439 104-130 (306)
414 3cgv_A Geranylgeranyl reductas 90.2 0.3 1E-05 57.1 6.4 59 802-861 97-159 (397)
415 2orv_A Thymidine kinase; TP4A 90.1 0.64 2.2E-05 49.9 8.2 37 498-538 89-125 (234)
416 4a5l_A Thioredoxin reductase; 90.1 0.19 6.5E-06 56.7 4.5 41 1062-1103 271-313 (314)
417 2rhm_A Putative kinase; P-loop 90.1 0.18 6.1E-06 52.5 4.0 26 413-438 5-30 (193)
418 1xp8_A RECA protein, recombina 90.1 1.2 4E-05 51.7 11.2 25 414-438 75-99 (366)
419 1kht_A Adenylate kinase; phosp 90.0 0.17 5.9E-06 52.5 3.7 25 414-438 4-28 (192)
420 3iij_A Coilin-interacting nucl 89.9 0.17 5.7E-06 52.3 3.5 25 414-438 12-36 (180)
421 2ga8_A Hypothetical 39.9 kDa p 89.9 0.18 6.1E-06 57.9 3.9 38 401-439 13-50 (359)
422 1kag_A SKI, shikimate kinase I 89.8 0.17 5.9E-06 51.7 3.5 25 414-438 5-29 (173)
423 1ly1_A Polynucleotide kinase; 89.8 0.18 6.2E-06 51.8 3.7 23 413-435 2-24 (181)
424 1gvn_B Zeta; postsegregational 89.8 0.15 5.1E-06 57.4 3.2 27 412-438 32-58 (287)
425 2iyv_A Shikimate kinase, SK; t 89.8 0.16 5.6E-06 52.5 3.3 26 414-439 3-28 (184)
426 2cdn_A Adenylate kinase; phosp 89.7 0.22 7.5E-06 52.5 4.3 29 411-439 18-46 (201)
427 2aqj_A Tryptophan halogenase, 89.7 0.38 1.3E-05 59.1 7.1 60 801-861 159-219 (538)
428 1via_A Shikimate kinase; struc 89.7 0.18 6E-06 51.9 3.5 24 415-438 6-29 (175)
429 3e1t_A Halogenase; flavoprotei 89.7 0.42 1.4E-05 58.4 7.4 59 802-861 106-169 (512)
430 1zuh_A Shikimate kinase; alpha 89.6 0.19 6.6E-06 51.2 3.7 25 415-439 9-33 (168)
431 3h1t_A Type I site-specific re 89.6 0.52 1.8E-05 58.7 8.2 44 394-439 181-224 (590)
432 3vaa_A Shikimate kinase, SK; s 89.5 0.21 7.1E-06 52.7 3.9 26 414-439 26-51 (199)
433 1ryi_A Glycine oxidase; flavop 89.5 0.34 1.2E-05 56.4 6.1 57 802-861 159-216 (382)
434 3tlx_A Adenylate kinase 2; str 89.5 0.34 1.2E-05 52.9 5.7 28 411-438 27-54 (243)
435 1qf9_A UMP/CMP kinase, protein 89.4 0.24 8.1E-06 51.5 4.2 27 412-438 5-31 (194)
436 1tev_A UMP-CMP kinase; ploop, 89.4 0.21 7.3E-06 51.9 3.8 26 413-438 3-28 (196)
437 1nks_A Adenylate kinase; therm 89.4 0.19 6.4E-06 52.3 3.4 24 415-438 3-26 (194)
438 2gag_B Heterotetrameric sarcos 89.3 0.41 1.4E-05 56.2 6.7 58 802-861 169-227 (405)
439 3nyc_A D-arginine dehydrogenas 89.3 0.46 1.6E-05 55.1 7.1 57 802-861 149-206 (381)
440 3jvv_A Twitching mobility prot 89.1 1.6 5.3E-05 50.5 11.2 47 387-439 103-149 (356)
441 3umf_A Adenylate kinase; rossm 88.9 0.26 8.8E-06 52.8 4.1 28 412-439 28-55 (217)
442 3cm0_A Adenylate kinase; ATP-b 88.8 0.24 8.1E-06 51.3 3.7 25 414-438 5-29 (186)
443 3t61_A Gluconokinase; PSI-biol 88.8 0.25 8.4E-06 52.1 3.9 26 413-438 18-43 (202)
444 3fbs_A Oxidoreductase; structu 88.7 0.71 2.4E-05 51.3 7.8 58 803-861 52-109 (297)
445 2bwj_A Adenylate kinase 5; pho 88.7 0.24 8.4E-06 51.8 3.7 25 414-438 13-37 (199)
446 2ius_A DNA translocase FTSK; n 88.6 3 0.0001 50.4 13.5 67 502-568 300-374 (512)
447 2vli_A Antibiotic resistance p 88.6 0.18 6.2E-06 52.0 2.6 26 414-439 6-31 (183)
448 3uie_A Adenylyl-sulfate kinase 88.6 0.24 8.4E-06 52.1 3.6 28 411-438 23-50 (200)
449 2c95_A Adenylate kinase 1; tra 88.5 0.25 8.7E-06 51.5 3.7 25 414-438 10-34 (196)
450 1e6c_A Shikimate kinase; phosp 88.5 0.24 8.3E-06 50.5 3.4 24 415-438 4-27 (173)
451 1aky_A Adenylate kinase; ATP:A 88.4 0.29 9.8E-06 52.4 4.0 26 414-439 5-30 (220)
452 2plr_A DTMP kinase, probable t 88.4 0.27 9.3E-06 51.9 3.8 26 414-439 5-30 (213)
453 3io5_A Recombination and repai 88.1 1.4 4.9E-05 49.5 9.5 38 401-438 12-53 (333)
454 3cmw_A Protein RECA, recombina 88.0 0.28 9.4E-06 67.3 4.4 24 415-438 1084-1107(1706)
455 3b6e_A Interferon-induced heli 88.0 0.97 3.3E-05 47.6 8.0 23 415-437 50-72 (216)
456 1y63_A LMAJ004144AAA protein; 87.9 0.3 1E-05 50.7 3.7 25 414-438 11-36 (184)
457 3vkw_A Replicase large subunit 87.8 0.71 2.4E-05 54.6 7.2 24 500-523 235-258 (446)
458 3axb_A Putative oxidoreductase 87.8 0.53 1.8E-05 56.2 6.4 58 802-861 176-251 (448)
459 3fb4_A Adenylate kinase; psych 87.5 0.29 1E-05 52.1 3.5 24 416-439 3-26 (216)
460 2pt5_A Shikimate kinase, SK; a 87.5 0.32 1.1E-05 49.3 3.7 24 415-438 2-25 (168)
461 4eun_A Thermoresistant glucoki 87.5 0.35 1.2E-05 50.9 4.0 26 413-438 29-54 (200)
462 2wwf_A Thymidilate kinase, put 87.3 0.31 1.1E-05 51.6 3.5 27 413-439 10-36 (212)
463 1zak_A Adenylate kinase; ATP:A 87.3 0.29 1E-05 52.4 3.3 26 414-439 6-31 (222)
464 3dme_A Conserved exported prot 87.2 0.59 2E-05 53.8 6.1 58 803-861 146-206 (369)
465 1knq_A Gluconate kinase; ALFA/ 87.2 0.41 1.4E-05 49.0 4.2 26 413-438 8-33 (175)
466 3p32_A Probable GTPase RV1496/ 87.2 25 0.00086 40.2 19.9 28 411-438 77-104 (355)
467 1zd8_A GTP:AMP phosphotransfer 87.1 0.32 1.1E-05 52.3 3.5 25 414-438 8-32 (227)
468 3i3l_A Alkylhalidase CMLS; fla 87.1 0.5 1.7E-05 58.7 5.7 60 801-861 122-185 (591)
469 3sr0_A Adenylate kinase; phosp 87.1 0.35 1.2E-05 51.4 3.7 25 415-439 2-26 (206)
470 1ukz_A Uridylate kinase; trans 87.0 0.34 1.2E-05 50.9 3.6 25 414-438 16-40 (203)
471 2jaq_A Deoxyguanosine kinase; 86.9 0.36 1.2E-05 50.6 3.7 24 415-438 2-25 (205)
472 1ak2_A Adenylate kinase isoenz 86.9 0.4 1.4E-05 51.8 4.2 25 414-438 17-41 (233)
473 1nn5_A Similar to deoxythymidy 86.6 0.4 1.4E-05 50.8 3.9 27 413-439 9-35 (215)
474 3ps9_A TRNA 5-methylaminomethy 86.3 0.91 3.1E-05 57.5 7.6 57 803-861 413-470 (676)
475 2qor_A Guanylate kinase; phosp 86.3 0.34 1.2E-05 51.2 3.1 25 414-438 13-37 (204)
476 2yvu_A Probable adenylyl-sulfa 86.2 0.5 1.7E-05 49.0 4.2 27 413-439 13-39 (186)
477 3c8u_A Fructokinase; YP_612366 86.1 0.51 1.7E-05 50.0 4.4 40 399-438 7-47 (208)
478 1zp6_A Hypothetical protein AT 86.1 0.36 1.2E-05 50.2 3.1 24 414-437 10-33 (191)
479 4fk1_A Putative thioredoxin re 85.9 0.97 3.3E-05 50.8 6.9 56 806-861 59-114 (304)
480 3be4_A Adenylate kinase; malar 85.9 0.39 1.3E-05 51.4 3.3 25 415-439 7-31 (217)
481 3fg2_P Putative rubredoxin red 85.9 1.3 4.5E-05 52.1 8.2 52 809-861 186-238 (404)
482 3e2i_A Thymidine kinase; Zn-bi 85.9 0.58 2E-05 49.7 4.5 27 498-524 100-126 (219)
483 3lxd_A FAD-dependent pyridine 85.8 1.6 5.6E-05 51.4 9.1 52 809-861 196-248 (415)
484 4gcm_A TRXR, thioredoxin reduc 85.8 0.58 2E-05 52.8 4.9 43 1060-1103 263-307 (312)
485 1e4v_A Adenylate kinase; trans 85.7 0.4 1.4E-05 51.0 3.3 23 416-438 3-25 (214)
486 2pbr_A DTMP kinase, thymidylat 85.7 0.45 1.5E-05 49.4 3.6 24 415-438 2-25 (195)
487 2bbw_A Adenylate kinase 4, AK4 85.7 0.47 1.6E-05 51.8 3.9 27 413-439 27-53 (246)
488 2xb4_A Adenylate kinase; ATP-b 85.5 0.43 1.5E-05 51.3 3.5 24 415-438 2-25 (223)
489 1pj5_A N,N-dimethylglycine oxi 85.5 0.99 3.4E-05 58.6 7.5 58 802-861 146-204 (830)
490 2pez_A Bifunctional 3'-phospho 85.3 0.53 1.8E-05 48.4 3.9 26 413-438 5-30 (179)
491 3p1w_A Rabgdi protein; GDI RAB 85.2 0.87 3E-05 54.7 6.2 50 811-861 260-311 (475)
492 1m7g_A Adenylylsulfate kinase; 85.0 0.77 2.6E-05 48.7 5.1 27 412-438 24-50 (211)
493 3nix_A Flavoprotein/dehydrogen 85.0 1.2 4E-05 52.6 7.3 59 802-861 101-163 (421)
494 2v3c_C SRP54, signal recogniti 85.0 1.8 6.3E-05 51.3 8.8 25 414-438 100-124 (432)
495 1rz3_A Hypothetical protein rb 84.9 0.96 3.3E-05 47.6 5.8 41 398-438 5-47 (201)
496 1rif_A DAR protein, DNA helica 84.9 3.8 0.00013 45.3 11.1 22 416-437 131-152 (282)
497 2oln_A NIKD protein; flavoprot 84.7 1.3 4.5E-05 51.7 7.5 63 796-861 141-205 (397)
498 2z43_A DNA repair and recombin 84.7 1.4 4.9E-05 50.1 7.5 25 413-437 107-131 (324)
499 1kdg_A CDH, cellobiose dehydro 84.6 0.86 2.9E-05 56.1 6.0 45 817-861 205-258 (546)
500 1kgd_A CASK, peripheral plasma 84.5 0.54 1.9E-05 48.5 3.6 25 414-438 6-30 (180)
No 1
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification, 5-carboxymethylaminomethyl uridine, WOBB uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Probab=100.00 E-value=1.8e-143 Score=1321.73 Aligned_cols=552 Identities=48% Similarity=0.767 Sum_probs=517.3
Q ss_pred hhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeE
Q psy13354 761 IHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKI 840 (1342)
Q Consensus 761 ~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~ 840 (1342)
..++++|++++||.|++.+|.+++||+++|.+|||+||++|+|+||..|.+.|++.+++++|++|++.+|++|..++++|
T Consensus 77 ~g~lv~eldalgg~~~~~~d~~gi~f~~l~~~kGpav~~~r~~~Dr~~~~~~L~~~Le~~~GVeI~~~~Vt~L~~e~g~V 156 (637)
T 2zxi_A 77 KGIVVREIDALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKVCENQENLYIKQEEVVDIIVKNNQV 156 (637)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEESCEEEEEESSSBE
T ss_pred hHHHHHHHHHhhhHHHHHhhhcccceeecccccCccccchhhhCCHHHHHHHHHHHHHhCCCCEEEEeEEEEEEecCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccccccc
Q psy13354 841 LGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKM 920 (1342)
Q Consensus 841 ~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~~~ 920 (1342)
.||++.+|..+.|++||+|||||+++.+|+|...+++||.|+.+|.+++..|+++|+++.+++||||||++++||||+++
T Consensus 157 ~GV~t~dG~~i~AdaVVLATG~~s~~~~~~G~~~~~~Gr~G~~~A~~la~~L~~lG~~v~~l~tgtppRi~~~sId~~~~ 236 (637)
T 2zxi_A 157 VGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIPGGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSAL 236 (637)
T ss_dssp EEEEETTSCEEECSEEEECCTTCBTCEEEETTEEEECSBTTBCCBCTHHHHHHHTTCCCEEEEEEECCEEEGGGCCCTTS
T ss_pred EEEEECCCcEEEeCEEEEccCCCccCceeccceecCCCCCCchhHHHHHHHHHhcCCceEEecCCcCceecccccCHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCcccccCCCCC------CCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCC
Q psy13354 921 EEQIGDFDPVPVFSVLGNINL------HPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFP 994 (1342)
Q Consensus 921 ~~~~~d~~~~~~f~~~~~~~~------~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~ 994 (1342)
..|+|| ..+.+|||++.... ..+|++||+|+|++++|++|+.|++.+|+|+|.++++|||||||||+|++||+
T Consensus 237 ~~q~~d-~~~~~fs~~~~~~~~~~~~~~~~ql~c~~t~t~~~~~~ii~~~l~~~~~~~g~i~~~Gprycpsie~k~~rf~ 315 (637)
T 2zxi_A 237 EVAPGD-DPPPKFSFWTEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKIVKFP 315 (637)
T ss_dssp EEECCC-SSCBCSCSSSSSTTCSBCCTTCCCCCEEEEECCHHHHHHHHHTC---------------CCCCSHHHHHHHCT
T ss_pred ccccCC-CCCCCccccCCCcccccccCcccceeccccCccHHHHHHHHhcchhccccCccccccCCccCcchhhhhcccC
Confidence 999999 99999999987421 24699999999999999999999999999999999999999999999999999
Q ss_pred CCCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeec
Q psy13354 995 KKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFA 1074 (1342)
Q Consensus 995 ~~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~a 1074 (1342)
+|++|++|||||++++.++|++|+||+||+++|.+++++|||||||+|+||||+||||||||++|++|||+|.++|||||
T Consensus 316 dk~~h~i~lepEg~~~~~~y~~G~stslp~~~Q~~~~~~ipGle~a~~~r~Gy~ieyd~i~p~~l~~tLe~k~~~gLf~A 395 (637)
T 2zxi_A 316 DKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIEYDVVPPTELYPTLETKKIRGLFHA 395 (637)
T ss_dssp TCSCCEEEEEECCSSCCEEEEETCCCCSCHHHHHHHHTTSTTCTTCCEEECCEEEEEEECCGGGBCTTSBBSSSBTEEEC
T ss_pred CcccceeeeccccccCceeeecCCCCcCCHHHHHHHHhhCcCcccceEeccccccccceEchhhcCccccccCCCCEEEe
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccc
Q psy13354 1075 GQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRL 1154 (1342)
Q Consensus 1075 Gqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl 1154 (1342)
||||||+|||||||||++||+|||++++|++||+|+|++|||||||||||||||+||||||||||||||+||+||||+||
T Consensus 396 GqinGt~GyeEAaaqGl~AG~nAa~~~~~~~~~~~~r~~ayig~liddl~t~g~~epyrm~tsrae~rl~lr~dnad~rl 475 (637)
T 2zxi_A 396 GNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLRRDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRL 475 (637)
T ss_dssp GGGGTBCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTCHHHHHHHHHHHHCCSSCBCGGGCCCTTTTTSCSTTHHHHH
T ss_pred eecCCcchHHHHHHHHHHHHHHHHHHhcCCCCCCCChhheehhhHHHHHhhcCCCchhhhcccHHHHHHHhccCChhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhHhhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhc-cc
Q psy13354 1155 TEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTS-LK 1233 (1342)
Q Consensus 1155 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~-~~ 1233 (1342)
||+||++|||+++||+.|++|++.+++++++|++++++|. . .. . ....|++|+|+ |+++|++|.+ +.
T Consensus 476 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~--------~~-~-~~~~~~~~~l~-~~~~~~~~~~~~~ 543 (637)
T 2zxi_A 476 AKLGRELGLLSEEQYKLVKELEREIEKWKEFYKSERVSVA-V--------GG-D-TRSYSVATLMT-MNYTLDDVKEKFG 543 (637)
T ss_dssp HHHHHHHTSSCHHHHHHHHHHHHHHHHHHHHHTTCEEEEE-E--------TT-E-EEEEEHHHHTT-TTCCHHHHHHHHC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCccCC-C--------CC-C-CCcCCHHHHhC-CCCCHHHHHHhhC
Confidence 9999999999999999999999999999999999999775 1 11 2 45679999999 9999999998 65
Q ss_pred ccCCCCCcccccCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhh
Q psy13354 1234 GINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQA 1313 (1342)
Q Consensus 1234 ~~~~~~~~~~~~~~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a 1313 (1342)
|+ .. +++++.+++||++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.|||||
T Consensus 544 ~~-~~-------~~~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~e~~~~p~~~~y~~~~~ls~e~~~kl~~~~p~~~~~a 615 (637)
T 2zxi_A 544 YE-VP-------QHPYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDKIPGLTKEAREKLKKFKPITVGQA 615 (637)
T ss_dssp CC-CC-------SSHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCBCCTTCCGGGCTTCCHHHHHHHHHHCCSBHHHH
T ss_pred Cc-cC-------CCHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhCCCCcCCCCcccCCCcCHHHHHHHHhcCCCCHHHH
Confidence 64 22 68999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhc
Q psy13354 1314 SRISGVTPAALTLLLIYLKS 1333 (1342)
Q Consensus 1314 ~ri~Gv~p~~i~~l~~~~~~ 1333 (1342)
|||||||||||+.|++||++
T Consensus 616 ~ri~gv~p~~~~~l~~~~~~ 635 (637)
T 2zxi_A 616 SRIDGITPAAITALLVYLGK 635 (637)
T ss_dssp TTSTTCCHHHHHHHHHHTTC
T ss_pred hhCCCCCHHHHHHHHHHHhc
Confidence 99999999999999999985
No 2
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA; tRNA modification, FAD binding domain, structural genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Probab=100.00 E-value=8.3e-143 Score=1321.46 Aligned_cols=565 Identities=60% Similarity=0.979 Sum_probs=444.9
Q ss_pred hhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeE
Q psy13354 761 IHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKI 840 (1342)
Q Consensus 761 ~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~ 840 (1342)
..++++|++++||.|+..+|.+++||++||.+|||+||++|+|+||..|.+.|++.+++++|++|++++|++|..++++|
T Consensus 78 ~~~lv~ei~algg~~~~~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~~~~~L~e~Le~~~GV~I~~~~V~~L~~e~g~V 157 (651)
T 3ces_A 78 KGHLVKEVDALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTALENQPNLMIFQQAVEDLIVENDRV 157 (651)
T ss_dssp HHHHHHHHHHTTCSHHHHHHHHEEEEEEESTTSCGGGCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEESSSBE
T ss_pred hHHHHHHHHHhccHHHHHhhhcccchhhhhcccCcccccchhhCCHHHHHHHHHHHHHhCCCCEEEEEEEEEEEecCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999899999999999999999999
Q ss_pred EEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHcCCCccccccCCCcccccCccccccc
Q psy13354 841 LGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKM 920 (1342)
Q Consensus 841 ~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~~~ 920 (1342)
.||.+.+|..+.|+.||+|||||+++.+++|...++.|+.|...+.+++..|+++|+++.+++||||||++++||||+++
T Consensus 158 ~GV~t~dG~~I~Ad~VVLATGt~s~~~~i~G~~~~~~griGg~~a~eLA~~L~~lG~~v~~~~tgtpprid~~sId~~~~ 237 (651)
T 3ces_A 158 VGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYSGGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVL 237 (651)
T ss_dssp EEEEETTSEEEEEEEEEECCSTTTCCEEECC-------------CCHHHHHHHTTTCCEEEECCEECCEEEGGGSCGGGS
T ss_pred EEEEECCCCEEECCEEEEcCCCCccCccccCcccCCCCCccchhhhHHHHHHHhcCCeEEEecCCCCCcccccccChHHh
Confidence 99999999899999999999999999999999999999999888999999999999999999999999999999999999
Q ss_pred eeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCCccc
Q psy13354 921 EEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHH 1000 (1342)
Q Consensus 921 ~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~~~ 1000 (1342)
..|+|| ..+.+|||++...-..+|++||+|+|++++|++++.|+|.+|+|+|.++++|||||||||+|++||++|++|+
T Consensus 238 ~~q~~d-~~~~~fsf~~~~~~~~~q~~c~~t~t~~~~~~ii~~~~~~~~~~~g~i~~~Gprycpsie~k~~rf~~k~~~~ 316 (651)
T 3ces_A 238 AQQHGD-NPMPVFSFMGNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADRNQHQ 316 (651)
T ss_dssp EEECCC-SSCCCSSTTCCGGGSCCCCCEEEEECCHHHHHHHHHTGGGC---------------CCHHHHHHHSCSSSCCE
T ss_pred eeeccC-CCCCCCccCCCCCCcccceecceeCccHHHHHHHHhcccccCcccccccccCCcccccccccccccCCCccce
Confidence 999999 9999999988742123599999999999999999999999999999999999999999999999999999999
Q ss_pred eeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCc
Q psy13354 1001 IFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGT 1080 (1342)
Q Consensus 1001 ~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~ 1080 (1342)
+|||||++++.++|++|+||+||+++|.+++++|||||||+|+||||+||||||||++|++|||+|.++|||||||||||
T Consensus 317 i~lepeg~~~~~~y~~G~st~lp~~~q~~~~~~ipGle~a~i~r~Gy~ieyd~i~p~~L~~tle~k~~~gLf~AGqinGt 396 (651)
T 3ces_A 317 IFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDPRDLKPTLESKFIQGLFFAGQINGT 396 (651)
T ss_dssp EEEEESCTTCCEEEEETCCCCSCHHHHHHHHHTSTTCTTCCEEECCEEEEEEEECGGGBCTTSBBSSSBTEEECSGGGTC
T ss_pred eEeccccccCCeeeecCCCCCCCHHHHHHHHhhCCCccceEEEeccceeccCccchhhcCccccccCCCCeEEEEEecCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhhhHh
Q psy13354 1081 TGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK 1160 (1342)
Q Consensus 1081 ~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~~~~ 1160 (1342)
+|||||||||++||+|||++++|++|++|+|++|||||||||||||||+||||||||||||||+||+||||+||||+||+
T Consensus 397 tGYeEAaaqGl~AG~nAa~~~~~~~~~~~~r~~ayiG~liddl~t~g~~epyrm~tsrae~rl~lr~dnad~rl~~~~~~ 476 (651)
T 3ces_A 397 TGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYLGVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRE 476 (651)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTTCHHHHHHHHHHHHSSCCCGGGHHHHHTTCSTTCGGGHHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHHHHHhcCCCCCCCChhhhhhhhHHHHHHHhcccchHHhhhhHHHHHHHhcccchhhhchHhHhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccCCCCC
Q psy13354 1161 LGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNL 1240 (1342)
Q Consensus 1161 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~ 1240 (1342)
+|||+++||+.|++|++.+++++++|++++++|.+.++..+.....+++....|++|+|+||+++|++|.++.|....
T Consensus 477 ~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-- 554 (651)
T 3ces_A 477 LGLVDDERWARFNEKLENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFAPA-- 554 (651)
T ss_dssp HTCCCHHHHHHHHHHHHHHHHHHHHHHTCEECTTSTTHHHHHTTSSSCCSSCEEHHHHHTSTTCCHHHHTTSTTTCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCchHHHHHHHHHhcCCcccccCCHHHHhCCCCCCHHHHHhhcCCccC--
Confidence 999999999999999999999999999999988766665666555566777889999999999999999987765222
Q ss_pred cccccCc-HHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhhhcCCCC
Q psy13354 1241 YNTEIYQ-EDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGV 1319 (1342)
Q Consensus 1241 ~~~~~~~-~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a~ri~Gv 1319 (1342)
++ +++.+++||++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.|||||||||||
T Consensus 555 -----~~~~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~e~~~~p~~~~y~~~~~ls~e~~~kl~~~~p~~~~~a~ri~gv 629 (651)
T 3ces_A 555 -----LTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSNEVIAKLNDHKPASIGQASRISGV 629 (651)
T ss_dssp -----CSCHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred -----CCHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcCCCcCCCCcccCCCcCHHHHHHHHhcCCCCHHHHhhCCCC
Confidence 67 999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHhc
Q psy13354 1320 TPAALTLLLIYLKS 1333 (1342)
Q Consensus 1320 ~p~~i~~l~~~~~~ 1333 (1342)
|||||+.|++||++
T Consensus 630 ~p~~~~~l~~~~~~ 643 (651)
T 3ces_A 630 TPAAISILLVWLKK 643 (651)
T ss_dssp --------------
T ss_pred CHHHHHHHHHHHhh
Confidence 99999999999985
No 3
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA; rossmann fold, FAD-binding domain, dinucleotide-binding motif; HET: FAD; 3.20A {Chlorobium tepidum}
Probab=100.00 E-value=1.3e-137 Score=1275.57 Aligned_cols=564 Identities=44% Similarity=0.702 Sum_probs=529.2
Q ss_pred hhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeE
Q psy13354 761 IHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKI 840 (1342)
Q Consensus 761 ~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~ 840 (1342)
..++++|+++++|.|++.+|.+++||++||.+|||+||++|+|+||..|.+.|++.++++||++|++++|++|..++++|
T Consensus 71 ~~~lv~el~al~g~~~~~~d~~gi~f~~l~~~kgpav~~~r~~~Dr~~l~~~L~~~l~~~~GV~I~~~~V~~L~~d~g~V 150 (641)
T 3cp8_A 71 KGQITREIDALGGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRIVEHEPNIDLLQDTVIGVSANSGKF 150 (641)
T ss_dssp HHHHHHHHHHHTCSHHHHHHHHEEEEEEECSSSCTTTCEEEEEECHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEE
T ss_pred HHHHHHHHHhcccHHHHHHHhcCCchhhcccccCccccchhhhcCHHHHHHHHHHHHHhCCCCEEEeeEEEEEEecCCEE
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCC-CCcchHHHHHHHHHcCCCccccccCCCcccccCcccccc
Q psy13354 841 LGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRF-GDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSK 919 (1342)
Q Consensus 841 ~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~-g~~~s~~l~~~l~~~g~~~~~~~~~~~~r~~~~si~~~~ 919 (1342)
.||.+.+|..+.|+.||+|||||++|.+|+|...+++|++ |+.++.+++..|.++|+++.+++||||||++++||||+.
T Consensus 151 ~GV~t~~G~~i~Ad~VVLATG~~s~~~i~~G~~~~~~g~~vG~~~a~~la~~L~~~G~kv~~l~tGtpprv~~~sid~~~ 230 (641)
T 3cp8_A 151 SSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFPGGRSTAEPPVEGLTESLASLGFSFGRLKTGTPPRIDSRSVDYTI 230 (641)
T ss_dssp EEEEETTSCEEEEEEEEECCTTCBTCEEEETTEEEECSSSTTSCCBCSHHHHHHHTTCCEEEEEEEECCEEEGGGSCTTT
T ss_pred EEEEECCCcEEEeCEEEECcCCCCCccceeeeeeeccccccCCchhhhhHHHHHhCCceEEeecCCCCcccCcccCChhh
Confidence 9999999999999999999999999999999999999999 999999999999999999999999999999999999999
Q ss_pred ceeecCCCCCCCcccccCCCCCCCCccccchhhcchhHHHHHHhhcccCCCCccccccccCCCCCCcccccccCCCCCcc
Q psy13354 920 MEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSH 999 (1342)
Q Consensus 920 ~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~~~~~~g~r~~~s~~~k~~~~~~~~~~ 999 (1342)
++.|+|| ..+.+|||+++.....+|++||+|+|+.++|.+|+.|+|.+|+|+|.++|.|||||||||+|++||++|++|
T Consensus 231 ~e~~~gd-~~~~~fsf~~~~~p~~~~~~C~~T~T~~~~h~II~~~~~~~p~~~g~isG~G~RycPsIedki~rf~d~~~~ 309 (641)
T 3cp8_A 231 VTEQPGD-VDPVPFSFSSTSVANRNLVSCYLTKTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPDKSSH 309 (641)
T ss_dssp SEEECCC-SSCCCSSSSCCCCGGGCCCCEEEEECCHHHHHHHHTTTTTCTTCCC---------CCCSHHHHHHCCSCSCC
T ss_pred hhccccc-ccccccccccCCCCcccccccccccCchhhhhHHhcCccccCCCCCcccCcCCccCcchhhhheeccCCCcc
Confidence 9999999 888999998763212359999999999999999999999999999999999999999999999999999999
Q ss_pred ceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEEeeeeCccCccccccccCcCCeeecccccC
Q psy13354 1000 HIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQING 1079 (1342)
Q Consensus 1000 ~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g 1079 (1342)
|+|||||++++.++|+||+||+||+++|.+++++|||||+|+|+||||++|||||||++|++|||||.++||||||||||
T Consensus 310 ~~~lepe~~~~~~~~~~g~st~l~~~~q~~~~~~i~gle~a~~~~~G~~~~y~~i~p~~l~~tle~k~~~gLf~AGqi~g 389 (641)
T 3cp8_A 310 HIFLEPEGTDTVEMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFHPWQIRSTMETRPVENLFFAGQING 389 (641)
T ss_dssp EEEEEESSTTCCEEEEETCCCCSCHHHHHHHHTTSTTCTTCCEEECCEEEEEEEECGGGBCTTSBBSSSBTEEECSGGGT
T ss_pred eEEEecCCCCCCceecCCccccccHHHHHHHHhcCcchhhceEecceeeecceEECHHHcCCcccccCcCCEEEEEeecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhhcCCCCccccccchhhhhhhccCccccccchhhhH
Q psy13354 1080 TTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGW 1159 (1342)
Q Consensus 1080 ~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~~~~~epyrm~tsr~e~r~~lr~dna~~rl~~~~~ 1159 (1342)
|+||+||||||++||+|||++++|++|++|+|++||||||||||||||++||||||||||||||+||+||||.||||+|+
T Consensus 390 ~~Gy~eA~a~G~~AG~naa~~~~~~~~~~~~r~~~y~g~l~~~l~~~g~~epyrm~tsrae~rl~lr~dna~~~~~~~~~ 469 (641)
T 3cp8_A 390 TSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAYIGVLIDDLITKETKEPYRMFTSSAEHRLILRHDNADLRLRKIGY 469 (641)
T ss_dssp BCCHHHHHHHHHHHHHHHHHHHHTCCCCCCCTTTCHHHHHHHHHHHCCCSSCBCTTTCCCSCCGGGCGGGHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHHhcCCCCCCCChhhhHHHHHHHHHHhcCccchhhhccchHhhhhhhcccCcccCCCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhCCCcHHHHHHHHHHHHHHHHHHHHhhccccCCccccccccccccCcccccccCHHhhhcCCCCChhhHhcccccC---
Q psy13354 1160 KLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN--- 1236 (1342)
Q Consensus 1160 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~--- 1236 (1342)
++|||+++||+.|++|++.+++++++|++++++|..| +..+.....+++....|++|+|+||+++|++|.++.|+.
T Consensus 470 ~~gl~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 548 (641)
T 3cp8_A 470 DCNLVSSDDLHRTESIIKRVQHCLEVMKTAKVTPAEI-NTLLMNKGLQELKTPARALSLIKRPGISLQDILEHSLSVRSA 548 (641)
T ss_dssp HTTCSCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHH-HHHHHHHTCCCCCSCCCCHHHHSSSSCCHHHHHTTCHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHhcCccChHHH-HHHHHhhcCCccccccCHHHHhCCCCCCHHHHHhhCcccccc
Confidence 9999999999999999999999999999999988844 445554455567778899999999999999999876642
Q ss_pred -CCCCcccccC--cHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCCCCCccHHHHHHhhhcCCCCHHhh
Q psy13354 1237 -GKNLYNTEIY--QEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQA 1313 (1342)
Q Consensus 1237 -~~~~~~~~~~--~~~~~~~~~~~~kY~~yi~rq~~~~~~~~~~~~~~ip~~~dy~~~~~ls~e~~~kl~~~~P~t~~~a 1313 (1342)
.. + ++++.+++||++||+|||+||+++|++++++|+++||+||||++|+|||+|+||||+++||.|||||
T Consensus 549 ~~~-------~~~~~~~~~~~~~~~~y~~y~~~~~~~~~~~~~~e~~~~p~~~~y~~~~~ls~e~~~kl~~~~p~~~~~a 621 (641)
T 3cp8_A 549 AEE-------LCNDPRVAEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLSSEGREKLLKHRPATIGQA 621 (641)
T ss_dssp CCH-------HHHCHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCCCCSSSCTTCCSSCCTTHHHHHHHHCCSSHHHH
T ss_pred ccc-------cCCCHHHHHHHHHHhhHHHHHHHHHHHHHHHHhhcCCCCcCCCCcccCCCcCHHHHHHHHhcCCCCHHHH
Confidence 11 4 7899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCCHHHHHHHHHHHhc
Q psy13354 1314 SRISGVTPAALTLLLIYLKS 1333 (1342)
Q Consensus 1314 ~ri~Gv~p~~i~~l~~~~~~ 1333 (1342)
|||||||||||+.|++||++
T Consensus 622 ~ri~gv~p~~~~~l~~~~~~ 641 (641)
T 3cp8_A 622 SRILGVSPSDVSILMIRLGR 641 (641)
T ss_dssp TTSTTSCHHHHHHHHTTC--
T ss_pred hhCCCCCHHHHHHHHHHhcC
Confidence 99999999999999999973
No 4
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO; tRNA methyltransferase FAD folate, FAD, flavoprotein; HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB: 3g5q_A* 3g5r_A*
Probab=100.00 E-value=2.2e-72 Score=641.29 Aligned_cols=294 Identities=27% Similarity=0.344 Sum_probs=262.5
Q ss_pred chhhhhHhhhhccCCccccccCcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCC
Q psy13354 759 NLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTN 838 (1342)
Q Consensus 759 ~~~~~l~~ei~~~~~~~~~~~d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~ 838 (1342)
+..++|++|||+|||.|++++|.++| ||+|++ |+||..|++.|++.|+++|||+|.|++|++|.
T Consensus 62 ~akGlL~~EIdaLGg~m~~~aD~~~i----------pAg~al--~vDR~~f~~~~~~~le~~pni~l~q~eV~~l~---- 125 (443)
T 3g5s_A 62 NAKGLLQAEMRRAGSLVMEAADLARV----------PAGGAL--AVDREEFSGYITERLTGHPLLEVVREEVREIP---- 125 (443)
T ss_dssp CHHHHHHHHHHHHTCHHHHHHHHSEE----------CCTTEE--EECHHHHHHHHHHHHHTCTTEEEECSCCCSCC----
T ss_pred cchhHHHHHHHHcCChHhhhhhhcCC----------CCCccc--cCCcHHHHHHHHHHHHcCCCeEEEhhhhhhhc----
Confidence 57789999999999999999999999 899997 79999999999999999999999999999995
Q ss_pred eEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHHc-CCCccccccCCCcccccCcccc
Q psy13354 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKEL-QLSHGRLKTGTPPRIDKRTIDF 917 (1342)
Q Consensus 839 ~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~~-g~~~~~~~~~~~~r~~~~si~~ 917 (1342)
+++||||||| .+|.+|+++|+++ |.+..||||||||||+++||||
T Consensus 126 --------------~~~vIiatG~--------------------~~s~~Ls~~L~~~tG~~~~~f~~~tpPrv~~~SId~ 171 (443)
T 3g5s_A 126 --------------PGITVLATGP--------------------LTSEALAEALKRRFGDHFLAYYDAASPIVLYESIDL 171 (443)
T ss_dssp --------------SSSEEECCCT--------------------TCCHHHHHHHHHHHCGGGEEEEEEECCEEEGGGSCG
T ss_pred --------------CCCEEEeCCC--------------------CccHHHHHHHHHhhCCCceeeccCCCCEeeCCcccH
Confidence 4799999995 4799999999996 9999999999999999999999
Q ss_pred ccceeecCCCCCCCcccccCCCCCCCCccccchhhcch--hHHH------HHHhhcccCCCCccccccccCCCCCCccc-
Q psy13354 918 SKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNE--KTHN------IIRSEFKNSPIFSGKIESIGPRYCPSIED- 988 (1342)
Q Consensus 918 ~~~~~~~~d~~~~~~f~~~~~~~~~~~~~~c~~~~~~~--~~~~------~i~~~~~~~p~~~~~~~~~g~r~~~s~~~- 988 (1342)
++++.|++. .. + .++++|++++++. .++. +++.|++.+|+|+| |||||+
T Consensus 172 ~~~~~q~~~-~~--~----------~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~f~G---------CpsIE~~ 229 (443)
T 3g5s_A 172 TKCFRAGRY-GQ--S----------ADYLNCPMTEEEYRRFHQALLEAQRHTPHDWEKLEFFEA---------CVPVEEL 229 (443)
T ss_dssp GGCEECCCC------------------CEEEEECHHHHHHHHHHHHHCCBCCCC-------CTT---------CCCHHHH
T ss_pred HHhhcccCC-CC--C----------cccCCCCCChhHHHHHHHHHhccchhhhhccccCcccCC---------CcCHHHH
Confidence 999999986 32 1 2378898887542 2333 45667999999987 999999
Q ss_pred -----ccccCCC-------------CCccceeEeecccccceeecCccccCCCHHHHHHHHHhcccccceEEecceeEEE
Q psy13354 989 -----KVYRFPK-------------KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIE 1050 (1342)
Q Consensus 989 -----k~~~~~~-------------~~~~~~~l~p~~~~~~~~~~~g~~~~l~~~~q~~~~~~i~gle~a~i~~~g~~v~ 1050 (1342)
|++||.+ +++|+||||||+++++++|+|||||+||+++|++++|+|||||||+|+||||+||
T Consensus 230 a~rg~k~~rF~p~kp~gl~d~~~~~~p~a~v~LepE~~~~~~~y~~GfsTsLp~~~Q~~~~r~IpGLE~a~~~r~G~~~e 309 (443)
T 3g5s_A 230 ARRGYQTLLFGPMKPVGLVDPRTGKEPFAVVQLRQEDKAGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHR 309 (443)
T ss_dssp HHTCTTHHHHTTTCCTTCCBTTTTBCCSEEEEEEECSTTSCEEEETTCCCCBCHHHHHHHHTTSTTCTTCCEEECCEEEE
T ss_pred hhcCCceeecCCCccccCCCcccCCccceEEEEeecCCCCCEEeCCceecCCCHHHHHHHHhcCcChhhCeeeeCcEeec
Confidence 7888854 2356999999999999999999999999999999999999999999999999999
Q ss_pred eeeeC-ccCccccccccCcCCeeecccccCchhHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccchhhhhhhhhh
Q psy13354 1051 YDYFN-PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT 1125 (1342)
Q Consensus 1051 ~~~i~-p~~l~~tlesk~~~gL~~aGqi~g~~gy~eA~~~G~~Ag~na~~~~~~~~~~~~~r~~~y~gv~iddl~~ 1125 (1342)
||||| |++|++|||+|.++|||||||||||+|||||||||++||+|||++++|++|++|+|+ +||||||||||+
T Consensus 310 y~~i~sP~~L~~tle~k~~~~Lf~AGqi~G~~Gy~eAaa~Gl~AG~naa~~~~g~~p~~l~r~-~yiGvLiddl~~ 384 (443)
T 3g5s_A 310 NTYLNAPRLLGETLEFREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKALGLPPVAPPEE-SMLGGLVRYLAT 384 (443)
T ss_dssp EEEECHHHHBCTTSEETTEEEEEECGGGGTBCSHHHHHHHHHHHHHHHHHHHTTCCCCCCCTT-SHHHHHHHHHHH
T ss_pred CceecChhHhChhceecCCCCEEECccccccHHHHHHHHhHHHHHHHHHHHhcCCCCCCCChh-hhhhHHHHHhhc
Confidence 99999 999999999999999999999999999999999999999999999999999999996 899999999999
No 5
>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}
Probab=100.00 E-value=3.8e-43 Score=406.58 Aligned_cols=375 Identities=47% Similarity=0.795 Sum_probs=323.0
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
++.++..||.+++.+.++..|+.+.|.|.+|||+.|+.|++++...+.++|.+|||+.+||++++..+++|..+.++.++
T Consensus 32 ~~~l~~~Dpei~~~i~~E~~RQ~~~ieLIASEN~~S~aV~~a~gS~ltnKYaEGyPg~RyYgGce~vD~iE~la~~rak~ 111 (490)
T 3ou5_A 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 111 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC----------CHHHHHHHHHHHHHHH
T ss_pred ccchhhhCHHHHHHHHHHHHHHHcCceEecCCCcCCHHHHHHhcCcccccccCCCCCccccCCChHHHHHHHHHHHHHHH
Confidence 56788999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCCc----eEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-----HHhhhCCceeEEEEecCC-CCCCCC
Q psy13354 85 IFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-----MMLNMSGKWFNSICYGLN-KKEKID 154 (1342)
Q Consensus 85 ~~g~~~~----vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-----~~~~~~g~~~~~v~~~~~-~~~~id 154 (1342)
+||++++ .+.+.||+.||.+++.++++|||+|+.+++.+++|.+++ ..+...|..++.++++++ +++.+|
T Consensus 112 lF~a~~A~w~VNVQP~SGs~AN~avy~All~PGD~ilg~~l~~GGHltHg~~~~~~~v~~sg~~~~~~~Y~vd~~t~~ID 191 (490)
T 3ou5_A 112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 191 (490)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCC-CCCEECBC----------------------------CBCEETTTTEEC
T ss_pred HhCCCccccCCCCCcCCHHHHHHHHHHHHcCCCCEEEecccCCCCcccccccCCCcccccccccccccccccCCCCCccc
Confidence 9999965 688889999999999999999999999999999999987 345667777888888887 678999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
+|.+++.+.+++|++|+++.+.|+...|++++.++|++.|++|++|.||..|.+.++.+++|++.+|++++|.||+|.||
T Consensus 192 yd~~~~~A~~~kPklIi~G~SaY~r~id~~~~reIAd~vGA~Lm~DmAHiaGLVA~g~~psP~~~ADvVTtTTHKTLrGP 271 (490)
T 3ou5_A 192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSSTTCSC
T ss_pred HHHHHHHHhhcCCCeEEECCccCccccCHHHHHHHHhhcccEEEechhhhhhhhcccccCCccccceEEeccccccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeeEEEEec---------------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 235 RGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 235 ~GG~iv~~~---------------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
.||+|++++ ++.+.+....+|+..++|.....+|.+.++.+.+.+.++++.+++.+|++.|.+.|
T Consensus 272 rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L 351 (490)
T 3ou5_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL 351 (490)
T ss_dssp SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccchHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 999999987 57888988889999999999999999999999888899999999999999999999
Q ss_pred HhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 300 ~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
.+.|++++++++++|.+++++.+.+.+...+..+|++.||.+....+|+. ..++-+++||+|+.+.|++++.++++..+
T Consensus 352 ~~~G~~vvsGgTdnHlvLvDl~~~g~tG~~ae~~Le~agItvNkN~iP~D-~sp~~~SGiRiGTpa~TtRG~~e~dm~~I 430 (490)
T 3ou5_A 352 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD-RSAITPGGLRLGAPALTSRQFREDDFRRV 430 (490)
T ss_dssp HHTTCEEGGGSCSSSEEEEECGGGTCCHHHHHHHHHHTTEECEEECCTTC-CCSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred HhCCCeeecCCCCceEEEEeccccCCCHHHHHHHHHHcCcEECCCCCCCC-CCCCCCCeeEECCHHHHhCCCCHHHHHHH
Confidence 99999999999999999999988888899999999999999999888987 45667789999999999999999998665
Q ss_pred H
Q psy13354 380 V 380 (1342)
Q Consensus 380 ~ 380 (1342)
+
T Consensus 431 A 431 (490)
T 3ou5_A 431 V 431 (490)
T ss_dssp H
T ss_pred H
Confidence 4
No 6
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=100.00 E-value=3.3e-41 Score=402.39 Aligned_cols=359 Identities=45% Similarity=0.774 Sum_probs=335.7
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||+|..|++++||+++++.|.+++..++.+|+|||+||+|+|||++++.+++.++|.. .....+|+.|.+
T Consensus 4 ~~l~~k~rp~~~~~~vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~-----~~~~~~~~~~~~ 78 (373)
T 1jr3_A 4 QVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-----GITATPCGVCDN 78 (373)
T ss_dssp CCHHHHTCCCSTTTSCSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHSCTT-----CSCSSCCSSSHH
T ss_pred HHHHHhhCCCchhhccCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCC-----CCCCCCCcccHH
Confidence 478999999999999999999999999999999999999999999999999999999999753 334578999999
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
|..+..+.++++.+++.+...+++.++++++.+...|.+++++||+|||+|.++.+..+.|+++++++++++++|+++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~Ll~~le~~~~~~~~Il~~~~ 158 (373)
T 1jr3_A 79 CREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTD 158 (373)
T ss_dssp HHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSCHHHHHHHHHHHHSCCSSEEEEEEESC
T ss_pred HHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhcHHHHHHHHHHHhcCCCceEEEEEeCC
Confidence 99999999999999988766677889999999999999999999999999999999999999999999999999999999
Q ss_pred CCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHH
Q psy13354 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618 (1342)
Q Consensus 539 ~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~ 618 (1342)
++++.+++.+||..++|.+++.+++..|+..+++++|+.+++++++.+++.++||+|.+.++++++..++.+.||.++|+
T Consensus 159 ~~~l~~~l~sr~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G~~r~~~~~l~~~~~~~~~~i~~~~v~ 238 (373)
T 1jr3_A 159 PQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVS 238 (373)
T ss_dssp GGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSSCHHHHHHHHHHHHHHTTTCBCHHHHH
T ss_pred hHhCcHHHHhheeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHhcCCcccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998888889999999
Q ss_pred HHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCccc-ccCCchhHHHHHHHHh
Q psy13354 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEI-LIKDSPNYNEIIQLSK 697 (1342)
Q Consensus 619 ~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~-~~~~~~~~~~~~~~a~ 697 (1342)
++++......+|++++++..++...++.+++.+...|++|..+++.|.++||+++.++...+. ...+++..+.+.++++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~g~~~~~~l~~l~~~~r~l~~~~~~~~~~~~~~~~~~~~~~~~a~ 318 (373)
T 1jr3_A 239 AMLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALGNDMAAIELRMRELAR 318 (373)
T ss_dssp HHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTTCTTCCCSGGGGTHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHhhcCccccccchhHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999875443 2345667788999999
Q ss_pred cCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcccccc
Q psy13354 698 KFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQTLH 742 (1342)
Q Consensus 698 ~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~~~l~ 742 (1342)
+||.++|.++++.+.++|.++|++.|+++.+|+++++++.+.|..
T Consensus 319 ~~~~~~l~~~~~~l~~~~~~lk~~~~~~l~le~~ll~~~~~~~~~ 363 (373)
T 1jr3_A 319 TIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFHPRM 363 (373)
T ss_dssp HSCHHHHHHHHHHHHHHHHHTTTSSSHHHHHHHHHHHHHHTCSSS
T ss_pred hCCHHHHHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999988999999999999999987654
No 7
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A
Probab=100.00 E-value=2.8e-37 Score=376.99 Aligned_cols=375 Identities=47% Similarity=0.792 Sum_probs=295.0
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
+..++..||.+++.+.++..|+.+.|.|.+++|+++|.|++|+...+.+.|..|++++++|++++..+++|+.+++++++
T Consensus 32 ~~~l~~~d~~~~~~~~~e~~rq~~~i~lias~n~~~~~V~eA~~~~l~~~y~~G~~g~r~~~G~~~~~~lE~~a~~~~a~ 111 (490)
T 2a7v_A 32 QESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYYGGAEVVDEIELLCQRRALE 111 (490)
T ss_dssp CCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGTCCCCC------------CTHHHHHHHHHHHH
T ss_pred cchhhhcCHHHHHHHHHHHHHHHcCceEECCCCCCCHHHHHHHHHHHcCCCccCCCcccccCccHHHHHHHHHHHHHHHH
Confidence 35788899999999999999999999999999999999999999999999999999999999988888999889999999
Q ss_pred HhCCCC----ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-----HhhhCCceeEEEEecCC-CCCCCC
Q psy13354 85 IFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-----MLNMSGKWFNSICYGLN-KKEKID 154 (1342)
Q Consensus 85 ~~g~~~----~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-----~~~~~g~~~~~v~~~~~-~~~~id 154 (1342)
++|.+. +.++++|||.|+..++.++++|||+|++..+.|++|++++. .+...|..+.+++++++ +++.+|
T Consensus 112 l~g~~~~~~~~~v~~~sGt~An~~al~al~~pGD~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~~~~~~~~vd~~~~~iD 191 (490)
T 2a7v_A 112 AFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLID 191 (490)
T ss_dssp HTTCCTTTEEEECCCSSHHHHHHHHHHHHCCSCEECCC-------------------------------CCBCTTTCSBC
T ss_pred HcCCCcccCceEEeCCchHHHHHHHHHHHcCCCCEecccCccccccccchhhhcchhHHHcCCeEEEEecccccccCCcC
Confidence 999986 56676799999999999999999999998888887766543 23455665667777766 578999
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
++++++++.+.++++++++.++++...|+++|+++|++||++|++|++|..|..+.+..+.++..+|++++|+||+|+||
T Consensus 192 ~d~le~~l~~~~~klIi~~~s~~~~~~dl~~i~~ia~~~g~~livD~Ah~~glv~~g~~~~~~~~aDiv~~S~hK~l~Gp 271 (490)
T 2a7v_A 192 YNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGA 271 (490)
T ss_dssp HHHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCSC
T ss_pred HHHHHHHHhhcCCcEEEEcCCCCCCcccHHHHHHHHHHcCCEEEEccccccccccCCcCCCCCCCCCEEEECCcccCccc
Confidence 99999999876788999888889888899999999999999999999999888777766666667899999999999889
Q ss_pred CeeEEEEech---------------hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 235 RGGFILMKKK---------------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 235 ~GG~iv~~~~---------------l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
.||+++++++ +.+.++...+++..+++..+..+|++.++.+...+.++++.+++.+|++++.+.|
T Consensus 272 ~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L 351 (490)
T 2a7v_A 272 RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADAL 351 (490)
T ss_dssp SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 9999999874 5677777667777788888888888888887765567888999999999999999
Q ss_pred HhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 300 ~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
.+.|+++..++.+++++|++++..+.+...+..+|++.||.+....+|+.. .++.++++|+++.+.++++++++|+..+
T Consensus 352 ~~~G~~v~~~~t~t~lv~vdl~~~g~~~~~~~~~L~~~GI~v~~~~~p~d~-~p~~~~~iRig~~a~t~~g~~~~d~~~~ 430 (490)
T 2a7v_A 352 LERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRV 430 (490)
T ss_dssp HHTTCEEGGGSCSSSEEEEECTTTTCCHHHHHHHHHHTTEECEEECCTTCC-CSSSCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred HHcCcEEecCCCCCeEEEEEeCCCCCCHHHHHHHHHhCCeEEecCccCCCC-CCCCCCceEecccccccCCCCHHHHHHH
Confidence 999999876556789999999877667777888888899999988777763 3555788999999999999999998664
Q ss_pred H
Q psy13354 380 V 380 (1342)
Q Consensus 380 ~ 380 (1342)
+
T Consensus 431 ~ 431 (490)
T 2a7v_A 431 V 431 (490)
T ss_dssp H
T ss_pred H
Confidence 4
No 8
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=100.00 E-value=5.2e-36 Score=353.26 Aligned_cols=309 Identities=11% Similarity=0.064 Sum_probs=276.4
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcC
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG 480 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~ 480 (1342)
+.+.+.++ ++++|+||||||+|+||+++++.+++.+.|.+.. + .+.++++.
T Consensus 7 ~~l~~~l~-~~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~--------~---------------~~~~~~~~----- 57 (343)
T 1jr3_D 7 EQLRAQLN-EGLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFE--------E---------------HHTFSIDP----- 57 (343)
T ss_dssp TTHHHHHH-HCCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCC--------E---------------EEEEECCT-----
T ss_pred HHHHHHHh-cCCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCC--------e---------------eEEEEecC-----
Confidence 35667777 7899999999999999999999999998753100 0 12334442
Q ss_pred HHHHHHHHHHHhhcCccCCceEEEeccCcc-CCHHHHHHHHHhhcCCCCcEEEEEEeCCC------CCChHHHhccEEEE
Q psy13354 481 INEMAQLLEQTIYAPINARYKIYVIDEVHM-LTHHAFNAMLKTLEEPPKYIKFILATTEP------QKIPITVLSRCIQF 553 (1342)
Q Consensus 481 ~~~i~~ii~~~~~~p~~~~~rvviIDE~~~-L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~------~kl~~~L~sR~~~i 553 (1342)
..+++++++.+.+.|+++++|||+|||+|. ++++.+++|++++|+||+++++|+++++. .++.++|.|||.++
T Consensus 58 ~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~~~ 137 (343)
T 1jr3_D 58 NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQV 137 (343)
T ss_dssp TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCCTTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTCEEE
T ss_pred CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCChHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCceEE
Confidence 157899999999999999999999999999 99999999999999999999999999874 35788999999999
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhc-CCCCCHHHHHHHhccCcHHHHHHH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS-SEKITLNSMQEMLSIIDQKYLIQI 632 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~-~~~It~e~V~~~v~~~~~~~if~l 632 (1342)
+|.+++.+++.+|+.++++++|+.++++++++|++.++||++.+.++|+|+..|. ++.||.++|+++++...+.++|++
T Consensus 138 ~~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~gdl~~~~~elekl~l~~~~~~It~e~V~~~~~~~~~~~if~l 217 (343)
T 1jr3_D 138 TCQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEGNLLALAQALERLSLLWPDGKLTLPRVEQAVNDAAHFTPFHW 217 (343)
T ss_dssp EECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTTCHHHHHHHHHHHHHHCTTCEECHHHHHHHHHHHCCCCHHHH
T ss_pred EeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHhhhhcCCHHHH
Confidence 9999999999999999999999999999999999999999999999999999986 456999999999999999999999
Q ss_pred HHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccc---------cCCchhHHHHHHHHhcCCHHH
Q psy13354 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL---------IKDSPNYNEIIQLSKKFNIEQ 703 (1342)
Q Consensus 633 ~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~---------~~~~~~~~~~~~~a~~~s~~~ 703 (1342)
++++..+|...|+.++++|...|++|..+++.|.++||+++.++...+.| ..+++..+.+.+++++||.++
T Consensus 218 ~~ai~~~d~~~al~~l~~l~~~g~~~~~il~~l~~~~r~l~~~~~~~~~g~~~~i~~~l~i~~~~~~~~~~~~~~~s~~~ 297 (343)
T 1jr3_D 218 VDALLMGKSKRALHILQQLRLEGSEPVILLRTLQRELLLLVNLKRQSAHTPLRALFDKHRVWQNRRGMMGEALNRLSQTQ 297 (343)
T ss_dssp HHHHTTSCHHHHHHHHTSSTTTTCCHHHHHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHTCCSSHHHHHHHHHHHSCHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHcCCCHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999865544 345566777889999999999
Q ss_pred HHHHHHHHHHHHHhhccC--CChhHHHHHHHHHhHcc
Q psy13354 704 IQLFYQISIHGRNELELA--PDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 704 L~~~l~~l~~~d~~lK~~--~~~~~~le~~ll~l~~~ 738 (1342)
|.++++.|.++|.++|++ .++|..+|.+++++|..
T Consensus 298 L~~~l~~l~~~d~~lK~~~~~~~~~~le~l~l~l~~~ 334 (343)
T 1jr3_D 298 LRQAVQLLTRTELTLKQDYGQSVWAELEGLSLLLCHK 334 (343)
T ss_dssp HHHHHHHHHHHHHHHHHSSCSCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHcCC
Confidence 999999999999999975 58999999999999873
No 9
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.7e-34 Score=338.05 Aligned_cols=311 Identities=19% Similarity=0.280 Sum_probs=282.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||+|..|++++||+++++.|...++.|+++| |+|+||+|+|||++++.+++.+.|..
T Consensus 12 ~~~~~~k~rp~~~~~~~g~~~~~~~L~~~i~~g~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~---------------- 74 (340)
T 1sxj_C 12 NLPWVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKN---------------- 74 (340)
T ss_dssp CCCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSSSSSHHHHHHHHHHHHHTTS----------------
T ss_pred CCchHHHhCCCcHHHhcCcHHHHHHHHHHHhcCCCce-EEEECCCCCCHHHHHHHHHHHHcCCC----------------
Confidence 3589999999999999999999999999999999998 99999999999999999999997521
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh--hcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI--YAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~--~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
....+.+++.++..+++.+++.+..+. ..++.++++|++|||+|.++.+.+++|++++|+|+.++.+|++
T Consensus 75 --------~~~~~~~~~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~ 146 (340)
T 1sxj_C 75 --------YSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVL 146 (340)
T ss_dssp --------HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred --------ccceEEEEcCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCCHHHHHHHHHHHhcCCCCeEEEEE
Confidence 113577888877677888888877665 3456677999999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCC----C
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE----K 611 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~----~ 611 (1342)
+|.+.++.++|+|||..++|.+++.+++.+|+.++++++++.+++++++.+++.++|++|+++++++++..+... .
T Consensus 147 ~n~~~~i~~~i~sR~~~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G~~r~~~~~l~~~~~~~~~~~~~~ 226 (340)
T 1sxj_C 147 ANYAHKLTPALLSQCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDE 226 (340)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTTCHHHHHHHTTTTTTTTCSSSCCC
T ss_pred ecCccccchhHHhhceeEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCccccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999988766543 6
Q ss_pred CCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHH
Q psy13354 612 ITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYN 690 (1342)
Q Consensus 612 It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~ 690 (1342)
||.++|.++++......++++++++..++...|+.++.++.. .|++|..++..|.++++.+
T Consensus 227 it~~~v~~~~~~~~~~~i~~l~~~i~~~~~~~al~~l~~l~~~~g~~~~~i~~~l~~~~~~~------------------ 288 (340)
T 1sxj_C 227 ISDDVIYECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDY------------------ 288 (340)
T ss_dssp BCHHHHHHHTTCCCHHHHHHHHHHHHTSCHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTTS------------------
T ss_pred ccHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc------------------
Confidence 999999999999999999999999999999999999999998 9999999999988888653
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 691 EIIQLSKKFN-IEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 691 ~~~~~a~~~s-~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
.++ ..++..++..+.++|..||.+.++.+.+|.+++++|..
T Consensus 289 -------~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~le~l~~~l~~~ 330 (340)
T 1sxj_C 289 -------ELQNEETRVHLLTKLADIEYSISKGGNDQIQGSAVIGAIKAS 330 (340)
T ss_dssp -------CCSSHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHH
T ss_pred -------cCCcHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHH
Confidence 356 78899999999999999999899999999999999875
No 10
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=100.00 E-value=7.9e-35 Score=341.16 Aligned_cols=313 Identities=23% Similarity=0.252 Sum_probs=265.0
Q ss_pred cccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEE
Q psy13354 393 LIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIE 472 (1342)
Q Consensus 393 lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~ 472 (1342)
++-|+.+++.|.+++++|+++|+|||+||+|+|||++|+.+++.++|... ....+|+.|++|..+..+.|+|+..
T Consensus 4 ~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~-----~~~~~c~~c~~c~~~~~~~~~d~~~ 78 (334)
T 1a5t_A 4 YPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQP-----QGHKSCGHCRGCQLMQAGTHPDYYT 78 (334)
T ss_dssp CGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSC-----BTTBCCSCSHHHHHHHHTCCTTEEE
T ss_pred CCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHhCCCC-----CCCCCCCCCHHHHHHhcCCCCCEEE
Confidence 34578889999999999999999999999999999999999999998642 2247899999999999999999999
Q ss_pred EccC---CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhcc
Q psy13354 473 MDAA---STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSR 549 (1342)
Q Consensus 473 i~~~---~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR 549 (1342)
+++. ...++++++++++.+...|++++++|+||||+|.|+.+++|+|++++|+|+++++||++++++++++++|+||
T Consensus 79 ~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SR 158 (334)
T 1a5t_A 79 LAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAAANALLKTLEEPPAETWFFLATREPERLLATLRSR 158 (334)
T ss_dssp ECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTT
T ss_pred EeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhc
Confidence 9875 5678899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhccCcHHHH
Q psy13354 550 CIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYL 629 (1342)
Q Consensus 550 ~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~~~~~~~i 629 (1342)
|..++|++++.+++.+||.+++ .+++++++.+++.++|++|.+++++++.... . ...+
T Consensus 159 c~~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G~~r~a~~~l~~~~~~-~----------------~~~~ 216 (334)
T 1a5t_A 159 CRLHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAGSPGAALALFQGDNWQ-A----------------RETL 216 (334)
T ss_dssp SEEEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTTCHHHHHHTTSSHHHH-H----------------HHHH
T ss_pred ceeeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCCCHHHHHHHhccchHH-H----------------HHHH
Confidence 9999999999999999998764 6789999999999999999999999875421 1 1122
Q ss_pred HHHHHHHHc-cChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCCHHHHHHHH
Q psy13354 630 IQILDALAE-QDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFY 708 (1342)
Q Consensus 630 f~l~dal~~-~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l 708 (1342)
++.+..+.. .+. +++++.+. ++++..++..|.++||++++++... .+..+.+..+.+.+++++|+.+++.+++
T Consensus 217 ~~~~~~~~~~~~~---~~~~~~l~--~~~~~~~l~~l~~~~rdll~~~~~~-~~~~~~~~~~~~~~~a~~~~~~~l~~~~ 290 (334)
T 1a5t_A 217 CQALAYSVPSGDW---YSLLAALN--HEQAPARLHWLATLLMDALKRHHGA-AQVTNVDVPGLVAELANHLSPSRLQAIL 290 (334)
T ss_dssp HHHHHHHHHHCCC---GGGHHHHC--STTHHHHHHHHHHHHHHHTCC-------CCCTTCHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHhChHH---HHHHHHHh--cccHHHHHHHHHHHHHHHHHhccCC-ccccCHHHHHHHHHHHHhCCHHHHHHHH
Confidence 333333322 221 12333332 5688999999999999999887653 3556677788899999999999999999
Q ss_pred HHHHHHHHhhc--cCCChhHHHHHHHHHhHcc
Q psy13354 709 QISIHGRNELE--LAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 709 ~~l~~~d~~lK--~~~~~~~~le~~ll~l~~~ 738 (1342)
+.+.+++..+| ++.|+++.+|.++++++..
T Consensus 291 ~~l~~~~~~l~~~~~~n~~l~le~ll~~l~~~ 322 (334)
T 1a5t_A 291 GDVCHIREQLMSVTGINRELLITDLLLRIEHY 322 (334)
T ss_dssp HHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 99999999999 7889999999999999853
No 11
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=100.00 E-value=4.6e-34 Score=332.83 Aligned_cols=310 Identities=22% Similarity=0.310 Sum_probs=277.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||+|..|++++||+.+++.+.+.+..++.++ |||+||+|+|||++++.+++.+.+..
T Consensus 4 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~---------------- 66 (319)
T 2chq_A 4 FEIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGEN---------------- 66 (319)
T ss_dssp --CTTTTTSCSSGGGSCSCHHHHHHHHTTTTTTCCCC-EEEESSSSSSHHHHHHHHHHHHHTTC----------------
T ss_pred cccHHHhcCCCCHHHHhCCHHHHHHHHHHHhCCCCCe-EEEECcCCcCHHHHHHHHHHHhcCCc----------------
Confidence 3579999999999999999999999999999998888 99999999999999999999987421
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh-hcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI-YAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~-~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
....+++++++...+.+.+++.+..+. ..|+. +++++|+|||+|.++.+.++.|+++++++++++++|++
T Consensus 67 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~ 138 (319)
T 2chq_A 67 --------WRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILS 138 (319)
T ss_dssp --------HHHHCEEEETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSCHHHHHTTGGGTSSSSSSEEEEEE
T ss_pred --------ccCCeEEEeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 012466777766556566666655544 55665 66899999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++.++++.+++.+||..++|.+++.+++.+|+..+++++|+.+++++++.+++.++||+|.+.++++++..+ .+.||.+
T Consensus 139 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~~~~~-~~~i~~~ 217 (319)
T 2chq_A 139 CNYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAI-GEVVDAD 217 (319)
T ss_dssp ESCGGGSCHHHHTTCEEEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTTCHHHHHHHHHHHHHS-SSCBCHH
T ss_pred eCChhhcchHHHhhCeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHc-CCCCCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999998765 5679999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQ 694 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~-~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~ 694 (1342)
+|.++++.....++|++++++..++...+++++.+++. .|.+|..++..+.++++.+
T Consensus 218 ~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~~g~~~~~i~~~l~~~~~~l---------------------- 275 (319)
T 2chq_A 218 TIYQITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISM---------------------- 275 (319)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTS----------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------
Confidence 99999999999999999999999999999999999998 8999999999988887653
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+++.+++.+++..+.++|..+|++.+++..+|.+++++|.+
T Consensus 276 ---~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~ 316 (319)
T 2chq_A 276 ---PIKDSLKVQLIDKLGEVDFRLTEGANERIQLDAYLAYLSTL 316 (319)
T ss_dssp ---CSCTTHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 48889999999999999999999999999999999999875
No 12
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*
Probab=100.00 E-value=5.5e-33 Score=342.43 Aligned_cols=374 Identities=47% Similarity=0.795 Sum_probs=304.5
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
++++..+|.++..+..+..++.+.|.|.+++|++++.+++++.+.+.+.|..|++++++|+++...+++++.++++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~i~L~a~e~~~~~~V~eA~~~~l~~~~~~g~p~~~~y~~~~~~~~le~~~~~~~a~~ 102 (483)
T 1rv3_A 23 QPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRYYGGTEHIDELETLCQKRALQA 102 (483)
T ss_dssp SCHHHHCHHHHHHHHHHHHHHHSSEECCTTCCCCCHHHHHHHTSGGGTCCCCEETTEESSSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhhhcCHHHHHHHHHHHHHhhcCeEEEcCCCCCCHHHHHHHHHHHhccCcccCCCccccCcchhHHHHHHHHHHHHHHH
Confidence 46777889999999888888888899999999999999999999998878778898889999999999999999999999
Q ss_pred hCCCC----ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-----hhhCCceeEEEEecCC-CCCCCCH
Q psy13354 86 FNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-----LNMSGKWFNSICYGLN-KKEKIDY 155 (1342)
Q Consensus 86 ~g~~~----~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-----~~~~g~~~~~v~~~~~-~~~~id~ 155 (1342)
+|.+. +.+.+++|++|+.+++.++++|||+|+++++.|+++..++.. +...|..+..++++++ ++|.+|+
T Consensus 103 ~g~~~~~~~~~V~~~sGs~an~~~~~all~pGD~Vl~~~~~~~~~~~~~~~~~~~~v~~~G~~~~~v~~~~~~~~~~iD~ 182 (483)
T 1rv3_A 103 YGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDY 182 (483)
T ss_dssp TTCCTTTEEEECCCSSHHHHHHHHHHHHTCTTCEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEEEECBCTTTCSBCH
T ss_pred hCCCcccCceEEEECCcHHHHHHHHHHhcCCCCEEEEecCccCcCcchhhhhcccCcccccceEEEEECccccCCCcCCH
Confidence 99884 324444888999999999999999999999998888765532 2333434678877766 6789999
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCC
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~ 235 (1342)
+++++++++.++++|++++++++...|+++|+++|+++|++|++|++|..|....+.+..++..+|++++|+||+|+||.
T Consensus 183 d~le~~i~~~~tklIi~~~sn~~~~~dl~~i~~ia~~~g~~livD~ah~~g~~~~~~~~~p~~~~div~~s~~K~l~Gpr 262 (483)
T 1rv3_A 183 DRLEENARLFHPKLIIAGTSCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGCR 262 (483)
T ss_dssp HHHHHHHHHHCCSEEEECCSSCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHHTSSCCGGGTCSEEEEESSGGGCCCS
T ss_pred HHHHHHHhhcCCcEEEEeCCcCCCcCCHHHHHHHHHHcCCEEEEEccchhcccccCCCCCCCCCCcEEEecCcccCCCCC
Confidence 99999998556777777777777667999999999999999999999998888776666666568999999999999999
Q ss_pred eeEEEEech---------------hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 236 GGFILMKKK---------------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 236 GG~iv~~~~---------------l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
||+++++++ +.+.+.....++..++++.+..++++.++......+++++.+++.++++++.+.|.
T Consensus 263 gG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~iaal~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~ 342 (483)
T 1rv3_A 263 AGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFKEYQRQVVANCRALSAALV 342 (483)
T ss_dssp CEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHH
Confidence 999999984 44455444445556778788888888888777655788899999999999999999
Q ss_pred hCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHHH
Q psy13354 301 QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380 (1342)
Q Consensus 301 ~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~~ 380 (1342)
+.|+++..++..++++|+++...+.+.+.+..+|++.||.+.....|+.. .++..+++|++++..+++++.++++.+++
T Consensus 343 ~~g~~~~~~~~~~~~~~v~~~~~g~~~~~~~~~L~~~gI~v~~~~~pg~~-~~~~~~~iRis~~~~~t~g~~~edi~~~~ 421 (483)
T 1rv3_A 343 ELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDK-SALRPSGLRLGTPALTSRGLLEKDFQKVA 421 (483)
T ss_dssp HTTCEEGGGSCSSSEEEEEGGGGTCCHHHHHHHHHHTTEECEEECCSSCS-CTTSCCEEEEECHHHHHTTCCHHHHHHHH
T ss_pred hcCCEeccCCCCCceEEEeccCCCCCHHHHHHHHHhCCcEEecCCCCCCC-cCCCCceEEeecCCcccCCCCHHHHHHHH
Confidence 99999876544568899999765556666777888889999965555442 23446789999999999898888876533
No 13
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=7.8e-33 Score=323.59 Aligned_cols=310 Identities=25% Similarity=0.326 Sum_probs=276.6
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||+|.+|++++||+++++.|.+.+..++.+| +||+||+|+|||++++.+++.+.+..
T Consensus 12 ~~~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~l~~~l~~~~---------------- 74 (327)
T 1iqp_A 12 EKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGEN---------------- 74 (327)
T ss_dssp TSCHHHHTCCCSTTTCCSCHHHHHHHHHHHHHTCCCE-EEEESCTTSSHHHHHHHHHHHHHGGG----------------
T ss_pred CCchhhccCCCCHHHhhCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCc----------------
Confidence 4589999999999999999999999999999998887 99999999999999999999987421
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHH-hhcCcc-CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQT-IYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~-~~~p~~-~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
....++++++++..+.+.+++.+... ...|++ +++++|+|||++.++.+.+++|++++++++.++++|++
T Consensus 75 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~L~~~le~~~~~~~~i~~ 146 (327)
T 1iqp_A 75 --------WRHNFLELNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILS 146 (327)
T ss_dssp --------HHHHEEEEETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEE
T ss_pred --------ccCceEEeeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCCHHHHHHHHHHHHhcCCCCeEEEE
Confidence 01246777776544445555554443 456666 77899999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++.++++.+++.+||..+.|.+++.+++..|+..+++++|+.+++++++.+++.++||+|.+.++++++..+. ..||.+
T Consensus 147 ~~~~~~l~~~l~sr~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~~~~~l~~~~~~~-~~i~~~ 225 (327)
T 1iqp_A 147 CNYSSKIIEPIQSRCAIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAALD-KKITDE 225 (327)
T ss_dssp ESCGGGSCHHHHHTEEEEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SEECHH
T ss_pred eCCccccCHHHHhhCcEEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHhcC-CCCCHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999877553 479999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHH-HcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIE-IYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQ 694 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~-~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~ 694 (1342)
+|.++++.....+++++++++..++...++..+++++ ..|.+|..++..|.++++.+
T Consensus 226 ~v~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~ll~~~g~~~~~i~~~l~~~~~~~---------------------- 283 (327)
T 1iqp_A 226 NVFMVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNL---------------------- 283 (327)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHGGGS----------------------
T ss_pred HHHHHHCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc----------------------
Confidence 9999999999999999999999999999999999998 88999999999998876531
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
+|+.+++.+++..+.++|..+|++.|+++.+|.+++++|.+
T Consensus 284 ---~~~~~~l~~~~~~l~~~~~~lk~~~~~~~~le~l~~~l~~~ 324 (327)
T 1iqp_A 284 ---PIEEPKKVLLADKIGEYNFRLVEGANEIIQLEALLAQFTLI 324 (327)
T ss_dssp ---SSCHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999999999864
No 14
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}
Probab=100.00 E-value=6.4e-32 Score=330.19 Aligned_cols=374 Identities=50% Similarity=0.865 Sum_probs=300.3
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
.+.+...+|.+++.+..+..++.+.|.+.+++|+++|.+++++.+.+.+.|..++++++++.+......+++.+++++++
T Consensus 23 ~~~l~~~~~~i~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~g~~~~~~~~g~~~~~~~e~~a~~~la~ 102 (447)
T 3h7f_A 23 SAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGGCEHVDVVENLARDRAKA 102 (447)
T ss_dssp GCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHhCceeEecCCCCCCHHHHHHHHHHhcCCccccCCcccccCccHHHHHHHHHHHHHHHH
Confidence 45677889999999988777777889999999999999999999988777877888888888888777777766689999
Q ss_pred HhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHH
Q psy13354 85 IFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAK 163 (1342)
Q Consensus 85 ~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~ 163 (1342)
++|.+.+.++++||++|+..++.++++|||+|+++.+.+++++..+......|..+..++++.+ +++.+|++++++++.
T Consensus 103 ~~g~~~~~v~~~sGs~a~~~a~~~~~~~Gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~ 182 (447)
T 3h7f_A 103 LFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATAL 182 (447)
T ss_dssp HHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHSSEEEEECCCTTTCSCCHHHHHHHHH
T ss_pred HcCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEecCcccccccchhhhhhhcCCeeEEEEcCcCcccCCcCHHHHHHHHH
Confidence 9999977774559999999999999999999999888877755444333333444566777766 567899999999997
Q ss_pred hcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec
Q psy13354 164 KNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~ 243 (1342)
+.++++++++.++++...++++|+++|++||++||+|++|..|....+.++.++..+|++++|+||+++|+.||++++++
T Consensus 183 ~~~~~~i~~~~~~~~~~~~l~~i~~l~~~~g~lli~Dea~~~g~~~~g~~~~~~~~~di~~~s~sK~l~G~~gG~i~~~~ 262 (447)
T 3h7f_A 183 EFRPKVIIAGWSAYPRVLDFAAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLIVGKQ 262 (447)
T ss_dssp HHCCSEEEEECSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSGGGCCCSCEEEEECG
T ss_pred hcCCeEEEEcCCCCCCccCHHHHHHHHHHcCCEEEEECCchhhhhcCCCCCCCCCCCcEEEecCCcCCCCCCeEEEEECH
Confidence 76788888878888877799999999999999999999998887666665656666899999999999889999999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-----CcEEeeCCCCCeEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-----GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-----g~~~~~~~~~~~~v~i 318 (1342)
++++.+.....++..+++..+..+++++++.....++++++.+++.++++++.+.|.+. |+++..++..++++|+
T Consensus 263 ~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~ 342 (447)
T 3h7f_A 263 QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLV 342 (447)
T ss_dssp GGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEE
T ss_pred HHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEE
Confidence 99888877666777777777777877777777665577889999999999999999988 8988665567889999
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHH
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIK 378 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~ 378 (1342)
++...+.+.+.+..+++++||.+.....|....+++.++++|+++...++.+++++++..
T Consensus 343 ~~~~~~~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~lRig~~~~~~~~~~~eei~~ 402 (447)
T 3h7f_A 343 DLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRIGTPALATRGFGDTEFTE 402 (447)
T ss_dssp ECTTSSCCHHHHHHHHHHTTEECBC-------------CEEEEECHHHHHHTCCHHHHHH
T ss_pred EcCCCCCCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCceeccCHHHhhCCCCHHHHHH
Confidence 998766677888888888899998544444222233356799999999888888877654
No 15
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=100.00 E-value=2.2e-31 Score=321.98 Aligned_cols=373 Identities=54% Similarity=0.915 Sum_probs=296.5
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
.++..+|.+++.+..+..++.+.+.+++++|++++.+++++.+.+.+.+..+++++.++.+.....++++.+++++++++
T Consensus 5 ~~~~~~~~i~~~~~~e~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 84 (417)
T 3n0l_A 5 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYGGCEFVDEIETLAIERCKKLF 84 (417)
T ss_dssp HHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTBGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHHHhcCeeeecccCCCCHHHHHHHhhhhhccccccCCCccccccchHHHHHHHHHHHHHHHHh
Confidence 56778899999998777777788999999999999999999998866777778877888888888999999999999999
Q ss_pred CCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC
Q psy13354 87 NAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK 166 (1342)
Q Consensus 87 g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~ 166 (1342)
|.+...++.++|++|+..++.++++|||+|++..+.++++...+......|..+.+++++.++++.+|++++++++++.+
T Consensus 85 g~~~~~i~~~sGt~a~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 164 (417)
T 3n0l_A 85 NCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEK 164 (417)
T ss_dssp TCSEEECCCSSHHHHHHHHHHHHSCTTCEEEEECC----------------CCSEEEEECCCTTSSCCHHHHHHHHHHHC
T ss_pred CCCCcceEeccHHHHHHHHHHHhcCCCCEEEecccccccccchhhhhhhhcceeeeEeccCCCCCCcCHHHHHHHHHhcC
Confidence 99866344448899999999999999999999888777665544444555666677777777778899999999998556
Q ss_pred CeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-chh
Q psy13354 167 PKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKY 245 (1342)
Q Consensus 167 ~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~-~~l 245 (1342)
+++|++++++++...++++|.++|++||++||+|++|..|....+.++..+...|++++|+||+|+|+.||+++++ +++
T Consensus 165 ~~~v~~~~~~~G~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~ 244 (417)
T 3n0l_A 165 PKLIVCGASAYARVIDFAKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIMTNDEEL 244 (417)
T ss_dssp CSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCCTTTCSEEEEESSTTTCSCSCEEEEESCHHH
T ss_pred CeEEEECCcccCccCCHHHHHHHHHHcCCEEEEECccchhhhhcccCCCccccceEEEeeCccccCCCCeeEEEECCHHH
Confidence 7788887777887779999999999999999999999888776666555555679999999999988889999998 688
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
.+.+.....++..++++....+++.+++......+++++.+++.++++++.+.|.+.|+++...+...+++|+.++..+.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 324 (417)
T 3n0l_A 245 AKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFKLVSDGTDNHLVLMSFLDREF 324 (417)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECTTSSS
T ss_pred HHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCceeccCCCCceEEEEEcccCCC
Confidence 88887665566666666777777777776655557788899999999999999999888876544567889999876666
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
+.+.+..+++++||.+.+...|..+..++...++|+++...++.+++++++..+
T Consensus 325 ~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~ri~~~~~~~~~~~~~~i~~~ 378 (417)
T 3n0l_A 325 SGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPALTARGFKEKEMEIV 378 (417)
T ss_dssp CHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeEecCHHHhhCCCCHHHHHHH
Confidence 677777888888999998877777655666678999999888888777776543
No 16
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*
Probab=100.00 E-value=1.9e-31 Score=322.69 Aligned_cols=373 Identities=58% Similarity=0.984 Sum_probs=283.8
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
+++..+|++++....+..+..+.+.+++++|+.+|.+.+++.+.+.+.+..+++++.++.+......+++.+++++++++
T Consensus 10 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~n~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~ 89 (420)
T 3gbx_A 10 NIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKRYYGGCEYVDVVEQLAIDRAKELF 89 (420)
T ss_dssp CHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCC--------------CHHHHHHHHHHHHHHH
T ss_pred chhhcCHHHHHHHHHHHHhhhcceeeeccCCCCCHHHHHHHHHHHhcccccCCCCccccCchHHHHHHHHHHHHHHHHHh
Confidence 46788899999998877777788999999999999999999998866676677777777776666788888889999999
Q ss_pred CCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC
Q psy13354 87 NAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK 166 (1342)
Q Consensus 87 g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~ 166 (1342)
|.+...++.++|++|+..++.++++|||+|++....|+++...+......|..+..++++.++++.+|++++++++++++
T Consensus 90 ~~~~~~v~~~sGs~a~~~a~~~~~~~gd~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~i~~~~ 169 (420)
T 3gbx_A 90 GADYANVQPHSGSQANFAVYTALLQPGDTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHK 169 (420)
T ss_dssp TCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEEEEC------------CHHHHSEEEEEEECTTCSCCHHHHHHHHHHHC
T ss_pred CCCCceeEecCcHHHHHHHHHHhcCCCCEEEecchhhcceeccchhhhhcccceeEEeccCCccCCcCHHHHHHHHHhcC
Confidence 99866554458999999999999999999999887777654333333344555566777777778899999999998877
Q ss_pred CeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec---
Q psy13354 167 PKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK--- 243 (1342)
Q Consensus 167 ~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~--- 243 (1342)
++++++++++++...++++|+++|++||++||+||+|+.|....+.++..+..+|++++|+||+++|+.||++++++
T Consensus 170 ~~~v~~~~~~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gg~~~~~~~~~ 249 (420)
T 3gbx_A 170 PKMIIGGFSAYSGVVDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKGGDE 249 (420)
T ss_dssp CSEEEECCTTCCSCCCHHHHHHHHHHTTCEEEEECTTTHHHHHTTSSCCSTTTSSEEEEESSGGGCSCSCEEEEESSCCH
T ss_pred CeEEEEecCccCCccCHHHHHHHHHHcCCEEEEECCcchhceecccCCcccccCCEEEeecccCCCCCCceEEEEcCCcH
Confidence 88888878888888899999999999999999999998887766655555556899999999999888899999998
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
++.+.+.....++..++++.+..++++.++.....++++++.+++.++++++.+.|.+.|+++..++..++++|+.++..
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~ 329 (420)
T 3gbx_A 250 ELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVEVFLNRGYKVVSGGTENHLFLLDLVDK 329 (420)
T ss_dssp HHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGG
T ss_pred HHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCeeccCCCCCeEEEEEcCCC
Confidence 78787776656666667777777777777777665577888999999999999999999998865445688999998765
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
..+.+.+..+++++||.+.+...|...+.++...++|++++..++.+.+++++..+
T Consensus 330 ~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRi~~~~~~~~~~~~~~i~~~ 385 (420)
T 3gbx_A 330 NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIRIGSPAVTRRGFKEAEVKEL 385 (420)
T ss_dssp TCCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHHH
T ss_pred CCCHHHHHHHHHHCCcEeccccCCCCccccCCCcceEEecchhcccCCCHHHHHHH
Confidence 55677777777888999999776665554555667999999998888777776543
No 17
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=1.2e-31 Score=317.15 Aligned_cols=314 Identities=22% Similarity=0.306 Sum_probs=276.1
Q ss_pred HHHHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 376 IIKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 376 ~~~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
....+|++||+|.+|++++||+++++.+..++..+..+| +||+||+|+|||++++.+++.+.+..
T Consensus 22 ~~~~~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~la~~la~~l~~~~-------------- 86 (353)
T 1sxj_D 22 LAQQPWVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPD-------------- 86 (353)
T ss_dssp ----CHHHHTCCSSTTTCCSCCTTHHHHHHHTTCTTCCC-EEEECSTTSSHHHHHHHHHHHHHHHH--------------
T ss_pred ccCccHHHhcCCCCHHHhhCCHHHHHHHHHHHhcCCCCE-EEEECCCCCCHHHHHHHHHHHhCCCc--------------
Confidence 345799999999999999999999999999999998888 89999999999999999999987420
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcC------------ccCCceEEEeccCccCCHHHHHHHHHhh
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAP------------INARYKIYVIDEVHMLTHHAFNAMLKTL 523 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p------------~~~~~rvviIDE~~~L~~~~~~~Ll~~L 523 (1342)
.....+..++++...+...+++.+....... ..+++++|+|||++.++...+++|++++
T Consensus 87 ---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~~~~~~~Ll~~l 157 (353)
T 1sxj_D 87 ---------LMKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMTADAQSALRRTM 157 (353)
T ss_dssp ---------HHTTSEEEECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSCHHHHHHHHHHH
T ss_pred ---------ccccceEEEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccCHHHHHHHHHHH
Confidence 0012466777776667777776665544321 1346789999999999999999999999
Q ss_pred cCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 524 EEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 524 e~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
++++..+.+|++++.+.++.+++.+||..++|.+++.+++..++..++.++++.+++++++.+++.++||+|.+++++++
T Consensus 158 e~~~~~~~~il~~~~~~~l~~~l~sR~~~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G~~r~~~~~l~~ 237 (353)
T 1sxj_D 158 ETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQS 237 (353)
T ss_dssp HHTTTTEEEEEEESCGGGSCHHHHHHSEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSSCHHHHHHHHHH
T ss_pred HhcCCCceEEEEeCchhhCcchhhccCceEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhcCC-----CCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC
Q psy13354 604 AINYSSE-----KITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQIS 678 (1342)
Q Consensus 604 l~~~~~~-----~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~ 678 (1342)
+..+++. .||.++|++++.......++++++++..++...++.+++++...|++|..|+..+.++++
T Consensus 238 ~~~~~~~~~~~~~It~~~v~~~~~~~~~~~~~~l~~~~~~~~~~~a~~~l~~l~~~g~~~~~i~~~l~~~~~-------- 309 (353)
T 1sxj_D 238 ASKGAQYLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQLHEYYI-------- 309 (353)
T ss_dssp THHHHHHHCSCCCCCHHHHHHHHTCCCSHHHHHHHHHHHSCCHHHHHHHHHHHHHTSCCCTTHHHHHHHHHH--------
T ss_pred HHHhcCCCccCccccHHHHHHHhCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------
Confidence 8777543 699999999999999999999999999999999999999999999999999888887652
Q ss_pred cccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 679 PEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 679 ~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
+++.++.+++.+++..+.++|..||.+.|+++.+|.+++++|.
T Consensus 310 ----------------~~~~~~~~~~~~~~~~l~~~~~~l~~g~~~~l~l~~~~~~~~~ 352 (353)
T 1sxj_D 310 ----------------TNDNFDTNFKNQISWLLFTTDSRLNNGTNEHIQLLNLLVKISQ 352 (353)
T ss_dssp ----------------HCSSSCHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ----------------HhccCCHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHh
Confidence 3567899999999999999999999988999999999999874
No 18
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=100.00 E-value=9.6e-32 Score=314.34 Aligned_cols=297 Identities=18% Similarity=0.250 Sum_probs=254.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|++||+|++|++++||+++++.+.+++..++.++.||++||||+|||++++++++.++
T Consensus 13 ~~~~~~k~rP~~~~~ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~------------------- 73 (324)
T 3u61_B 13 EHILEQKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVN------------------- 73 (324)
T ss_dssp CSSHHHHSCCCSTTTSCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTT-------------------
T ss_pred cchHHHhhCCCCHHHHhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhC-------------------
Confidence 3479999999999999999999999999999999999999999999999999999999986
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHH-HhhcCccCCceEEEeccCccCC-HHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQ-TIYAPINARYKIYVIDEVHMLT-HHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~-~~~~p~~~~~rvviIDE~~~L~-~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
.++++++++. .+.+.+++.+.. +...++++++++|+|||+|.++ .+.++.|++++++++.++.+|++
T Consensus 74 ----------~~~~~i~~~~-~~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~~~~~~~L~~~le~~~~~~~iI~~ 142 (324)
T 3u61_B 74 ----------ADMMFVNGSD-CKIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIIT 142 (324)
T ss_dssp ----------EEEEEEETTT-CCHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGGHHHHHHHHHHHHHHGGGCEEEEE
T ss_pred ----------CCEEEEcccc-cCHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCcHHHHHHHHHHHHhCCCCcEEEEE
Confidence 3578888765 347777776665 5667888899999999999999 99999999999999899999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHH-------HHHHHHHHHHhcCCCcch-hHHHHHHHhcCCcHHHHHHHHHHHHhh
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHD-------IVNNLCYILNKENIKFET-SALNLIATGAQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~e-------l~~~l~~~~~~~g~~i~~-~al~~La~~~~g~lr~a~~~L~kl~~~ 607 (1342)
+|..+++.++|++||.+++|.+|+.++ +..++...+..+++.+++ ++++.+++.++||+|.+++.|+++.
T Consensus 143 ~n~~~~l~~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~-- 220 (324)
T 3u61_B 143 ANNIDGIIKPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFRKTIGELDSYS-- 220 (324)
T ss_dssp ESSGGGSCTTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHG--
T ss_pred eCCccccCHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHh--
Confidence 999999999999999999999999877 566677778889999999 9999999999999999999999987
Q ss_pred cCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCch
Q psy13354 608 SSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSP 687 (1342)
Q Consensus 608 ~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~ 687 (1342)
..+.||.++|.+++.. .+.++++++++..++...++..+.++.. +|..|+..|+.
T Consensus 221 ~~~~i~~~~v~~~~~~--~~~i~~~~~~~~~~~~~~a~~~~~~l~~---~~~~i~~~l~~-------------------- 275 (324)
T 3u61_B 221 SKGVLDAGILSLVTND--RGAIDDVLESLKNKDVKQLRALAPKYAA---DYSWFVGKLAE-------------------- 275 (324)
T ss_dssp GGTCBCC--------------CHHHHHHHHTTCHHHHHHHHHHHSS---CHHHHHHHHHH--------------------
T ss_pred ccCCCCHHHHHHHhCC--HHHHHHHHHHHHcCCHHHHHHHHHHhcc---CHHHHHHHHHH--------------------
Confidence 5567999999998866 6689999999999999999999998877 78888766532
Q ss_pred hHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHc
Q psy13354 688 NYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737 (1342)
Q Consensus 688 ~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~ 737 (1342)
.+++.++.+++.+++..+.+.|..+|.+.++.+.+|.+++++|.
T Consensus 276 ------~~~~~~~~~~l~~i~~~l~~~d~~l~~g~~~~~~le~~~~~~~~ 319 (324)
T 3u61_B 276 ------EIYSRVTPQSIIRMYEIVGENNQYHGIAANTELHLAYLFIQLAC 319 (324)
T ss_dssp ------HHHHHSCHHHHHHHHHHHHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred ------HHHHhCCHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 33457888999999999999999999988999999999999974
No 19
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=5.5e-32 Score=320.42 Aligned_cols=329 Identities=18% Similarity=0.225 Sum_probs=256.1
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHH-HcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCC---CCCcccCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINAL-DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG---NGGITSQPCGK 455 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l-~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~---~~~~~~~~c~~ 455 (1342)
+|++||+|++|++++||+.+++.|.+++ ..++.+| ++|+||+|+|||++++.+++.+.+..... .+.....+|..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~ 81 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQPRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNR 81 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTCTTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhhCCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccc
Confidence 7999999999999999999999999999 8899998 99999999999999999999887643211 00011235666
Q ss_pred CcchhhhccCCCccEEEEccCCCcC--HHHHHHHHHHHhh-cCc---------cCCceEEEeccCccCCHHHHHHHHHhh
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRG--INEMAQLLEQTIY-API---------NARYKIYVIDEVHMLTHHAFNAMLKTL 523 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~--~~~i~~ii~~~~~-~p~---------~~~~rvviIDE~~~L~~~~~~~Ll~~L 523 (1342)
|..|..+... ++++++...... ...+++.++.+.. .++ .++++++||||++.++.+.+++|++++
T Consensus 82 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~~~~~~L~~~l 158 (354)
T 1sxj_E 82 KLELNVVSSP---YHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTM 158 (354)
T ss_dssp ----CCEECS---SEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSSCHHHHHHHHHHH
T ss_pred cceeeeeccc---ceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCHHHHHHHHHHH
Confidence 6666554433 455665543211 1246676666533 222 457899999999999999999999999
Q ss_pred cCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcc-hhHHHHHHHhcCCcHHHHHHHHH
Q psy13354 524 EEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFE-TSALNLIATGAQGSMRDALSLTD 602 (1342)
Q Consensus 524 e~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~-~~al~~La~~~~g~lr~a~~~L~ 602 (1342)
+++++++.+|+++++++++.++++|||..++|.+++.+++.+|+..+++++|+.++ +++++.+++.++||+|.++++++
T Consensus 159 e~~~~~~~~Il~t~~~~~l~~~l~sR~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~~~G~~r~a~~~l~ 238 (354)
T 1sxj_E 159 EKYSKNIRLIMVCDSMSPIIAPIKSQCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLE 238 (354)
T ss_dssp HHSTTTEEEEEEESCSCSSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHHHTTCHHHHHHHHT
T ss_pred HhhcCCCEEEEEeCCHHHHHHHHHhhceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHcCCCHHHHHHHHH
Confidence 99989999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred HHHhhcCCCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHH----HHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhhC
Q psy13354 603 QAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLIL----SIANKIEIYNLSYSIVLKDLSLLLHQISLIQIS 678 (1342)
Q Consensus 603 kl~~~~~~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al----~~l~~L~~~~~~~~~il~~L~~~~r~l~~~k~~ 678 (1342)
++..+..+.||.+++ +.....+.++|++++++..++...++ +.+.++...|.++..|+..|..++.
T Consensus 239 ~~~~~~~~~i~~~~~--~~~~~~~~~~~~l~~~i~~~~~~~~~~~~~~~l~~l~~~g~~~~~i~~~l~~~~~-------- 308 (354)
T 1sxj_E 239 SMALNNELALKSSSP--IIKPDWIIVIHKLTRKIVKERSVNSLIECRAVLYDLLAHCIPANIILKELTFSLL-------- 308 (354)
T ss_dssp HHHHTTTTEECSSCC--CCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHTTT--------
T ss_pred HHHHhCCCCcCcCcC--CCCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH--------
Confidence 998887656876654 23344456899999999987665544 4455666778888877755543221
Q ss_pred cccccCCchhHHHHHHHHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 679 PEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 679 ~~~~~~~~~~~~~~~~~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
.+++++..++.+++..+.+.|..+|.+.++++.||.+++++|.+
T Consensus 309 ----------------~~~~~~~~~l~~~~~~l~~~d~~l~~g~~~~~~le~~~~~~~~~ 352 (354)
T 1sxj_E 309 ----------------DVETLNTTNKSSIIEYSSVFDERLSLGNKAIFHLEGFIAKVMCC 352 (354)
T ss_dssp ----------------TCTTSCHHHHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHH
T ss_pred ----------------hccCCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 12478999999999999999999998899999999999999853
No 20
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=100.00 E-value=2.2e-31 Score=310.78 Aligned_cols=307 Identities=18% Similarity=0.242 Sum_probs=272.9
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|++||+|..|++++||+.+++.|.+.+..++.++ ++|+||+|+|||++++.+++.+.|..
T Consensus 9 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~----------------- 70 (323)
T 1sxj_B 9 LPWVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRS----------------- 70 (323)
T ss_dssp CCHHHHTCCSSGGGCCSCTHHHHHHHHHHHSCCCCC-EEEECSTTSSHHHHHHHHHHHHHGGG-----------------
T ss_pred CcHHHhcCCCCHHHHHCCHHHHHHHHHHHHcCCCCe-EEEECcCCCCHHHHHHHHHHHhcCCc-----------------
Confidence 478999999999999999999999999999999988 99999999999999999999987521
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh--hcCc-cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI--YAPI-NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~--~~p~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
....+++++++...+++.++++++.+. ..++ .+++++|+|||+|.++.+..++|+++++++++++++|++
T Consensus 71 -------~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~~~~~~L~~~le~~~~~~~~il~ 143 (323)
T 1sxj_B 71 -------YADGVLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAFA 143 (323)
T ss_dssp -------HHHHEEEECTTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCHHHHHTTHHHHHHTTTTEEEEEE
T ss_pred -------ccCCEEEecCccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCHHHHHHHHHHHhccCCCceEEEE
Confidence 113477788776667888888888776 4455 456899999999999999999999999999999999999
Q ss_pred eCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHH
Q psy13354 536 TTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615 (1342)
Q Consensus 536 t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e 615 (1342)
++..+++.+++.+||..++|.+++.+++.+|+..+++++|+.+++++++.+++.++||+|.++++++++... .+.||.+
T Consensus 144 ~~~~~~l~~~l~sr~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~a~~~l~~~~~~-~~~i~~~ 222 (323)
T 1sxj_B 144 CNQSNKIIEPLQSQCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVAG-HGLVNAD 222 (323)
T ss_dssp ESCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HSSBCHH
T ss_pred eCChhhchhHHHhhceEEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhc-CCCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999997743 3679999
Q ss_pred HHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHH-HHHcCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHH
Q psy13354 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANK-IEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQ 694 (1342)
Q Consensus 616 ~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~-L~~~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~ 694 (1342)
+|.++++.....++++++++ ++...++.++.+ +...|.++..++..+.++++.+.
T Consensus 223 ~v~~~~~~~~~~~i~~~~~~---~~~~~~l~~l~~dl~~~g~~~~~i~~~l~~~~~~l~--------------------- 278 (323)
T 1sxj_B 223 NVFKIVDSPHPLIVKKMLLA---SNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLA--------------------- 278 (323)
T ss_dssp HHHHHHTSCCHHHHHHHHSC---SSHHHHHHHHHHTTTTTTCCHHHHHHHHHHHHHTCT---------------------
T ss_pred HHHHHHCCCCHHHHHHHHhc---CCHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcc---------------------
Confidence 99999999999999999988 788889998887 88888888888887776655431
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHhhccCCChhHHHHHHHHHhHcc
Q psy13354 695 LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 695 ~a~~~s~~~L~~~l~~l~~~d~~lK~~~~~~~~le~~ll~l~~~ 738 (1342)
.++..++.++++.+.++|..+|++.++++.+|.++++++.+
T Consensus 279 ---~~~~~~l~~~l~~l~~~~~~l~~~~~~~l~le~l~~~~~~~ 319 (323)
T 1sxj_B 279 ---QVKESVRLEMIKEIGLTHMRILEGVGTYLQLASMLAKIHKL 319 (323)
T ss_dssp ---TSCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHhh
Confidence 27889999999999999999998899999999999999864
No 21
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}
Probab=99.97 E-value=4.3e-30 Score=311.40 Aligned_cols=375 Identities=58% Similarity=0.940 Sum_probs=275.9
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKK 84 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~ 84 (1342)
+..++..+|++...+..+..+..+.+.+.+++|+++|.+++++.+.+.+.|..++++..++.+....+.+++.+++++++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 89 (425)
T 3ecd_A 10 SQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRYYGGCEFADEVEALAIERVKR 89 (425)
T ss_dssp HCCHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGSSCTTC------------CCHHHHHHHHHHHH
T ss_pred HHHHHhhCHHHHHHHHHHHHHHhcceeeecccCCCCHHHHHHHhhhhhcccccCCCcchhcCCChHHHHHHHHHHHHHHH
Confidence 44677788888888877777777789999999999999999999988666666777666666555445666666688999
Q ss_pred HhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHH
Q psy13354 85 IFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAK 163 (1342)
Q Consensus 85 ~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~ 163 (1342)
++|.+.+.++++||++|+..++.+++++||+|++....|+++...+......|..+..++++.+ +++.+|++++++.++
T Consensus 90 ~~~~~~~~v~~~~Gs~a~~~al~~~~~~gd~Vi~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~ 169 (425)
T 3ecd_A 90 LFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAGGHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQ 169 (425)
T ss_dssp HHTCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECC------------------CEEEEECCCTTTSSCCHHHHHHHHH
T ss_pred HhCCCCceeecCchHHHHHHHHHHccCCCCEEEEcccccccceecchhhhhcccceeeeecCCCcccCccCHHHHHHHHh
Confidence 9999877565559999999999999999999999887776633333333345665677777766 557899999999998
Q ss_pred hcCCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEec
Q psy13354 164 KNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~ 243 (1342)
+.+++++++++++++...++++|.++|++||++||+||+|..|....+.+...+..+|++++|+||+++|+.|||+++++
T Consensus 170 ~~~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~De~~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~g~~~~~~ 249 (425)
T 3ecd_A 170 QHKPSLIIAGFSAYPRKLDFARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTND 249 (425)
T ss_dssp HHCCSEEEEECSCCCSCCCHHHHHHHHHHHTCEEEEECGGGHHHHHTTSSCCGGGTCSEEEEESSGGGCCCSCEEEEESC
T ss_pred hcCCcEEEEccccCCCcCCHHHHHHHHHHcCCEEEEECcChHhhhhcccccCchhcCcEEEecCCcccCCCCcEEEEeCC
Confidence 66678888877888888899999999999999999999998888766655555555799999999999888899999985
Q ss_pred -hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 244 -KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 244 -~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
++.+.+......+..+++..+..+++..++.....++++.+.+++.++++++.+.|.+.|+++..++..++++|+.++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~ 329 (425)
T 3ecd_A 250 EEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAGGVDLVTGGTDNHLLLVDLRP 329 (425)
T ss_dssp HHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGG
T ss_pred HHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCCceEEEEEeCC
Confidence 6777776655555556677777777777777766557788899999999999999999999886544567899999876
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHHH
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~~ 379 (1342)
...+.+.+..+++++||.+.+...|+....++..+++|++++..++.+.+++++..+
T Consensus 330 ~~~~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~~~~iRi~~~~~~~~~~~~e~i~~~ 386 (425)
T 3ecd_A 330 KGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLGTPAGTTRGFGAAEFREV 386 (425)
T ss_dssp GTCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEESHHHHHTTCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHcCCEecccccCCCCCCCCCccceeccchhheeccCCHHHHHHH
Confidence 555667777777888999998776665444444568999988888877777776543
No 22
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.97 E-value=3.1e-30 Score=296.24 Aligned_cols=283 Identities=16% Similarity=0.153 Sum_probs=234.6
Q ss_pred cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEc
Q psy13354 395 GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMD 474 (1342)
Q Consensus 395 Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~ 474 (1342)
||+++++.|.+.+++++ .|+||||||||+|||++++++++.+. .|. ..++|+.+++
T Consensus 1 g~~~~~~~L~~~i~~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~----------------~~~-------~~~~d~~~l~ 56 (305)
T 2gno_A 1 GAKDQLETLKRIIEKSE-GISILINGEDLSYPREVSLELPEYVE----------------KFP-------PKASDVLEID 56 (305)
T ss_dssp ---CHHHHHHHHHHTCS-SEEEEEECSSSSHHHHHHHHHHHHHH----------------TSC-------CCTTTEEEEC
T ss_pred ChHHHHHHHHHHHHCCC-CcEEEEECCCCCCHHHHHHHHHHhCc----------------hhh-------ccCCCEEEEc
Confidence 79999999999999999 88999999999999999999998532 111 1568999999
Q ss_pred cCC-CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEE
Q psy13354 475 AAS-TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553 (1342)
Q Consensus 475 ~~~-~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i 553 (1342)
++. ..++++++++++.+...|+++++|||||||+|.|+.+++|+|++++|+||++++||++|+++++++++|+|| ++
T Consensus 57 ~~~~~~~id~ir~li~~~~~~p~~~~~kvviIdead~lt~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR--~~ 134 (305)
T 2gno_A 57 PEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR--VF 134 (305)
T ss_dssp CSSSCBCHHHHHHHHHHHTSCCSSSSSEEEEETTGGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT--SE
T ss_pred CCcCCCCHHHHHHHHHHHhhccccCCceEEEeccHHHhCHHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce--eE
Confidence 864 678999999999999999999999999999999999999999999999999999999999999999999999 99
Q ss_pred EEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHH-------HhhcCCCCCHHHHHHHhccCcH
Q psy13354 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQA-------INYSSEKITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl-------~~~~~~~It~e~V~~~v~~~~~ 626 (1342)
+|++++++++.+||.+++ + ++++++ +.++||+|.+++.++.. ..+....-+.++|.++++...+
T Consensus 135 ~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l~~~~~~~~~l~~~~~~~~~~~~v~~~~~~~~~ 205 (305)
T 2gno_A 135 RVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAYKLGAEKLSGLMESLKVLETEKLLKKVLSKGLE 205 (305)
T ss_dssp EEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTTTTCSHHH
T ss_pred eCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHccCCc
Confidence 999999999999999887 3 677776 45799999887766421 1111111147889999988886
Q ss_pred H--HHHHHHHHHHccChHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHHHHHHhhCcccccCCchhHHHHHHHHhcCC-H
Q psy13354 627 K--YLIQILDALAEQDGNLILSIANKIEI--YNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFN-I 701 (1342)
Q Consensus 627 ~--~if~l~dal~~~~~~~al~~l~~L~~--~~~~~~~il~~L~~~~r~l~~~k~~~~~~~~~~~~~~~~~~~a~~~s-~ 701 (1342)
+ ++|+|++++.++|...|++++++|.. .|++| +.+|.+++|.++... .|. .
T Consensus 206 ~~~~v~~l~~ai~~~~~~~a~~~~~~l~~~~~g~~~---~~~i~~~~r~l~~~~---------------------~~~~~ 261 (305)
T 2gno_A 206 GYLACRELLERFSKVESKEFFALFDQVTNTITGKDA---FLLIQRLTRIILHEN---------------------TWESV 261 (305)
T ss_dssp HHHHHHHHHHHHHHSCGGGHHHHHHHHHHHSCTHHH---HHHHHHHHHHHHHTS---------------------CCCSH
T ss_pred chHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcCCCH---HHHHHHHHHHHHhhc---------------------hhhhH
Confidence 6 89999999999999999999999998 78777 778888998887322 333 3
Q ss_pred HHHHHHHHHHHHHHHhhcc-CCChhHHHHHHHHHhHcc
Q psy13354 702 EQIQLFYQISIHGRNELEL-APDEYAGFTMTLLRMLVF 738 (1342)
Q Consensus 702 ~~L~~~l~~l~~~d~~lK~-~~~~~~~le~~ll~l~~~ 738 (1342)
+.|. .-.+.+.|...|+ +.++.+-++.++.++|..
T Consensus 262 ~~l~--~~~~~~~~~~~k~~g~~~~lql~~l~~~~~~~ 297 (305)
T 2gno_A 262 EDQK--SVSFLDSILRVKIANLNNKLTLMNILAIHRER 297 (305)
T ss_dssp HHHH--HHHHHHHHHTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred HHHH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 3344 4556666777774 789999999999999964
No 23
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...
Probab=99.97 E-value=6.4e-29 Score=299.21 Aligned_cols=372 Identities=58% Similarity=0.984 Sum_probs=272.4
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
.++.++|.++..+..+.....+.+.++++++++++.+++++.+.+.+.+..+++.+.++.+.....++++.+++++++++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~r~~la~~~ 82 (405)
T 2vi8_A 3 YLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYYGGCEYVDIVEELARERAKQLF 82 (405)
T ss_dssp SHHHHCHHHHHHHHHHHHHHHHSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHH
T ss_pred chhhhCHHHHHHHHHHHHHhhcceeeccCcccCCHHHHHHHHHHhhcccccCCCCccccccchHHHHHHHHHHHHHHHHh
Confidence 34567788888887777666666778889999999999999888754554456655556665667888888899999999
Q ss_pred CCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhc
Q psy13354 87 NAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKN 165 (1342)
Q Consensus 87 g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~ 165 (1342)
|.+...+++++|++|+..++.+++.+||+|+++...|+++..........|.++.+++++.+ +++.+|++++++.+++.
T Consensus 83 g~~~~~i~~~sGt~a~~~a~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~i~~~ 162 (405)
T 2vi8_A 83 GAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLH 162 (405)
T ss_dssp TCSEEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCTTTTCTTSHHHHHSEEEEECBCTTTCSBCHHHHHHHHHHH
T ss_pred CCCceEEEecCcHHHHHHHHHHhcCCCCEEEEecccccchhcccchhhhccceeEEEecccccccCCcCHHHHHHHHHhc
Confidence 99876665558899999999999999999999887776654322111223333466666665 56789999999999864
Q ss_pred CCeEEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEechh
Q psy13354 166 KPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKY 245 (1342)
Q Consensus 166 ~~~liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l 245 (1342)
+++++++++++++...++++|.++|++||++||+|++|+.|....+.....+..+|++++|+||+++|+.||++++++++
T Consensus 163 ~~~~v~~~~~~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~ 242 (405)
T 2vi8_A 163 RPKLIVAAAAAYPRIIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQF 242 (405)
T ss_dssp CCSEEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTSSCCSTTTCSEEEEESSSTTCCCSCEEEEECHHH
T ss_pred CCeEEEEeCCCCCccCCHHHHHHHHHHcCCEEEEEccccccccccCcCCCccccCCEEEEeccccCCCCCCeEEEEcHHH
Confidence 56777777777776668999999999999999999999977654443332233578999999999976888999999988
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
++.+.....++..++++....+++.+++......++++..+++.++++++.+.|.+.|+++..++..++++|+.++..+.
T Consensus 243 ~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~ 322 (405)
T 2vi8_A 243 AKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGFTLVSGGTDNHLLLVDLRPQQL 322 (405)
T ss_dssp HHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTC
T ss_pred HHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCeEecCCCCceEEEEEccCCCC
Confidence 88887655555556555555555555555444447788899999999999999999898876533457889999875333
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhHHH
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIK 378 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~~~ 378 (1342)
+...+...|.++||.+.++..|.....++..+++|++++..++...+++++..
T Consensus 323 ~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i~~ 375 (405)
T 2vi8_A 323 TGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVTTRGFGLEEMDE 375 (405)
T ss_dssp CHHHHHHHHHHHTEECEEECCTTCSSCTTTCSEEEEECHHHHHTTCCHHHHHH
T ss_pred CHHHHHHHHHHcCceeccCcCccccCCCCCCCceEEeeeeeeecCCCHHHHHH
Confidence 44444455566799999876442211122245699999886665555566544
No 24
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}
Probab=99.96 E-value=6.5e-28 Score=290.61 Aligned_cols=367 Identities=57% Similarity=0.941 Sum_probs=268.8
Q ss_pred ccchHHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC
Q psy13354 10 KIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE 89 (1342)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~ 89 (1342)
..+|.+++.+..+..+..+.+.++++++++++.+.+++.+.+.+.+..+|+.+.++.+.+....+++.+++++++++|.+
T Consensus 6 ~~~~~i~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~~~~~~g~~~~~~~e~~ar~~la~~~g~~ 85 (407)
T 2dkj_A 6 KRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYYGGCEVIDRVESLAIERAKALFGAA 85 (407)
T ss_dssp CCCHHHHHHHHHHHHHHHTSEECCTTCCCCCHHHHHHHTSGGGGCCCCEETTEESSSCCHHHHHHHHHHHHHHHHHHTCS
T ss_pred ccCHHHHHHHHHHHHHhhcceeeccCCCCCCHHHHHHHHhhhhcCcccCCCcccccCCchHHHHHHHHHHHHHHHHhCCC
Confidence 34688888888877777788999999999999999999988854344455554444444445567766778999999998
Q ss_pred CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCe
Q psy13354 90 AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPK 168 (1342)
Q Consensus 90 ~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~ 168 (1342)
...++.++|++|+..++.+++.+||+|+++...|+++......+...|..+..++++.+ +++.+|++++++.+++.+++
T Consensus 86 ~~~i~~~sGt~a~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~ 165 (407)
T 2dkj_A 86 WANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPK 165 (407)
T ss_dssp EEECCCSSHHHHHHHHHHHHCCTTCEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECCCTTTSSCCHHHHHHHHHHHCCS
T ss_pred cceEEecchHHHHHHHHHHhcCCCCEEEEecccccCccchHHHHHhcCceEEEEecCCCcccCccCHHHHHHHHhhcCCe
Confidence 66555558999999999999999999999887777664323333444554466666655 46789999999999864667
Q ss_pred EEEEcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-chhHH
Q psy13354 169 LIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKYKK 247 (1342)
Q Consensus 169 liv~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~-~~l~~ 247 (1342)
+++++.+++|...++++|.++|++||++||+|++|+.|....+......+..|++++|+||+++|+.||+++++ +++++
T Consensus 166 ~v~~~~p~~~~~~~l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~~~~~~di~~~s~sK~l~g~~~G~~~~~~~~~~~ 245 (407)
T 2dkj_A 166 VIVAGASAYPRFWDFKAFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDPELGK 245 (407)
T ss_dssp EEEECCSSCCSCCCHHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCCCTTTCSEEEEESSGGGCCCSCEEEEESCHHHHH
T ss_pred EEEEeccccCCCCCHHHHHHHHHHcCCEEEEEccccccccccCccCCccccccEEEEeccccCCCCCceEEEECCHHHHH
Confidence 77777778887779999999999999999999999987665554333334479999999999988888999999 68888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+.....++..+++.....+++.+++......++++..+++.++++++.+.|.+.|+++..++..++++|+.++....+.
T Consensus 246 ~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 325 (407)
T 2dkj_A 246 RIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRGYRIVTGGTDNHLFLVDLRPKGLTG 325 (407)
T ss_dssp HHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCEEGGGSCSSSEEEEECGGGTCCH
T ss_pred HHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhCCceeecCCCCceEEEEECcccCCCH
Confidence 88765555555555554444555555554345778889999999999999999989887643456788999987533344
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccccchhhH
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEI 376 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~~~e~d~ 376 (1342)
..+...+.++||.+.++..|.....+...+++|++++..++...+++++
T Consensus 326 ~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~~~~~~~~~~~~i 374 (407)
T 2dkj_A 326 KEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTPAITTRGFTPEEM 374 (407)
T ss_dssp HHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECHHHHHTTCCGGGH
T ss_pred HHHHHHHHHcCceecCCcCccccccccCCCceeeecccccccCCCHHHH
Confidence 4445555677999998765422111122457999987754333333443
No 25
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.94 E-value=3.1e-25 Score=267.90 Aligned_cols=301 Identities=22% Similarity=0.267 Sum_probs=242.8
Q ss_pred HHHhhccCCCCccccccchhhH---HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHIS---KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~---~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
.+|+++|+|++|++++||++++ ..|...+..+++ +.+||+||||||||++|+.+++.+++
T Consensus 14 ~pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~~~~-~~vLL~GppGtGKTtlAr~ia~~~~~---------------- 76 (447)
T 3pvs_A 14 QPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHL-HSMILWGPPGTGKTTLAEVIARYANA---------------- 76 (447)
T ss_dssp CCHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHHTCC-CEEEEECSTTSSHHHHHHHHHHHTTC----------------
T ss_pred CChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHcCCC-cEEEEECCCCCcHHHHHHHHHHHhCC----------------
Confidence 5899999999999999999999 899999999988 56999999999999999999999863
Q ss_pred CcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEE
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~ 535 (1342)
.+..+++. ..++.++++++..+...+..+++.++||||+|.++...++.|++++++ ..+++|++
T Consensus 77 -------------~f~~l~a~-~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~q~~LL~~le~--~~v~lI~a 140 (447)
T 3pvs_A 77 -------------DVERISAV-TSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIED--GTITFIGA 140 (447)
T ss_dssp -------------EEEEEETT-TCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------CCHHHHHT--TSCEEEEE
T ss_pred -------------CeEEEEec-cCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHHHHHHHHHHhc--CceEEEec
Confidence 46666654 456788999998888777778889999999999999999999999998 45778888
Q ss_pred eCCCC--CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh-------cCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 536 TTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK-------ENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 536 t~~~~--kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~-------~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
|+... ++.++|.+||.++.|.+++.+++..++...+.. .++.+++++++.|++.++||+|.+++.|+++..
T Consensus 141 tt~n~~~~l~~aL~sR~~v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~Gd~R~lln~Le~a~~ 220 (447)
T 3pvs_A 141 TTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMAD 220 (447)
T ss_dssp ESSCGGGSSCHHHHTTEEEEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCSCHHHHHHHHHHHHH
T ss_pred CCCCcccccCHHHhCceeEEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCCCHHHHHHHHHHHHH
Confidence 76543 788999999999999999999999999999987 567899999999999999999999999999998
Q ss_pred hcC------CCCCHHHHHHHhccCcH----------HHHHHHHHHHHccChHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q psy13354 607 YSS------EKITLNSMQEMLSIIDQ----------KYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLH 670 (1342)
Q Consensus 607 ~~~------~~It~e~V~~~v~~~~~----------~~if~l~dal~~~~~~~al~~l~~L~~~~~~~~~il~~L~~~~r 670 (1342)
++. ..||.++|++++..... +.+..+.+++...+.+.|+.++.+|+..|++|..|...|.+.-
T Consensus 221 ~a~~~~~~~~~It~e~v~~~l~~~~~~~dk~gd~~yd~isal~ksirgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a- 299 (447)
T 3pvs_A 221 MAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIA- 299 (447)
T ss_dssp HSCBCTTSCEECCHHHHHHHHTCCCCC---CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHH-
T ss_pred hcccccCCCCccCHHHHHHHHhhhhhccCCccchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH-
Confidence 875 24999999999987632 4667777778889999999999999999999998887776533
Q ss_pred HHHHHhhCcccccCCchhHH---HHHHHHhcCCHHHHHHHH-HHHHHHHHhhcc
Q psy13354 671 QISLIQISPEILIKDSPNYN---EIIQLSKKFNIEQIQLFY-QISIHGRNELEL 720 (1342)
Q Consensus 671 ~l~~~k~~~~~~~~~~~~~~---~~~~~a~~~s~~~L~~~l-~~l~~~d~~lK~ 720 (1342)
..+-|..++.... ...+.+.+..+.+-.-.+ +.+.-+-.+-|+
T Consensus 300 -------~edig~a~p~a~~~~~~~~~~~~~~g~pe~~~~l~~~~~~la~~pks 346 (447)
T 3pvs_A 300 -------SEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKS 346 (447)
T ss_dssp -------HHTTGGGCTHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCC
T ss_pred -------HhcccCCChhHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHcCCcc
Confidence 2345666655433 245667777776654443 333334445554
No 26
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.93 E-value=8.7e-25 Score=243.02 Aligned_cols=240 Identities=54% Similarity=0.911 Sum_probs=217.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|..+|+|..|++++|++.+++.|..++..++.++.++|+||+|+|||++++.+++.+.+.. .....+|..|.
T Consensus 10 ~~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~-----~~~~~~~~~~~ 84 (250)
T 1njg_A 10 YQVLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNCET-----GITATPCGVCD 84 (250)
T ss_dssp -CCHHHHTCCCSGGGCCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHHHCTT-----CSCSSCCSCSH
T ss_pred HHHHhhccCCccHHHHhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCCCCCcccH
Confidence 3468899999999999999999999999999999888999999999999999999999998643 34567899999
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
.|..+....+.++..++.......+.++++++.+...+..+++.+|+|||++.++.+..+.|++++++++..+++|++++
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 85 NCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp HHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGSCHHHHHHHHHHHHSCCTTEEEEEEES
T ss_pred HHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccccHHHHHHHHHHHhcCCCceEEEEEeC
Confidence 99999988888888887765556677888888777777777889999999999999999999999999988999999999
Q ss_pred CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHH
Q psy13354 538 EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSM 617 (1342)
Q Consensus 538 ~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V 617 (1342)
....+.+++.+|+..+++++++.+++.+++..++.+.+..+++++++.+++.++|++|.+.+++++++.++.+.||.++|
T Consensus 165 ~~~~~~~~l~~r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~~~~~~~~~~~~~~~~~~i~~~~v 244 (250)
T 1njg_A 165 DPQKLPVTILSRCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAV 244 (250)
T ss_dssp CGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHTTTTSSBCHHHH
T ss_pred ChHhCCHHHHHHhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhccCceecHHHH
Confidence 98889999999999999999999999999999999999999999999999999999999999999999888788999999
Q ss_pred HHHhc
Q psy13354 618 QEMLS 622 (1342)
Q Consensus 618 ~~~v~ 622 (1342)
+++++
T Consensus 245 ~~~~~ 249 (250)
T 1njg_A 245 SAMLG 249 (250)
T ss_dssp HHHSC
T ss_pred HHHhC
Confidence 99875
No 27
>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*
Probab=99.90 E-value=1.6e-22 Score=245.43 Aligned_cols=317 Identities=20% Similarity=0.214 Sum_probs=221.9
Q ss_pred eeeeecCCC----CcHHHHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 30 IELIASENY----TSLAVMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 30 i~l~a~~n~----l~~~v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
|.+..+ ++ .++.+.+++.+.+. .+..+++.++...+ ... ..++++.+++++|.+.+++++ +|++|+..
T Consensus 67 id~~~~-~~lg~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~G~~~~----~~~l~~~la~~~g~~~~i~~~-sGs~a~~~ 139 (427)
T 2w8t_A 67 ILLGTY-NYMGMTFDPDVIAAGKEALE-KFGSGTCGSRMLNGTFHD----HMEVEQALRDFYGTTGAIVFS-TGYMANLG 139 (427)
T ss_dssp EECSCC-CTTCGGGCHHHHHHHHHHHH-HHCSCCCSCTTTTCCCHH----HHHHHHHHHHHHTCSEEEEES-CHHHHHHH
T ss_pred EEEECc-ccccCCCCHHHHHHHHHHHH-HhCCCCcccccccCCcHH----HHHHHHHHHHHhCCCceEEec-CcHHHHHH
Confidence 445554 44 34569999888875 34434443333322 343 344555888999988776666 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC--c
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~--~ 179 (1342)
++.+++++||.|++....| .+....+...|. +++.++. .|++++++.+++. ++++|++++++++ .
T Consensus 140 al~~l~~~gd~vl~~~~~h---~~~~~~~~~~g~--~~~~~~~-----~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~ 209 (427)
T 2w8t_A 140 IISTLAGKGEYVILDADSH---ASIYDGCQQGNA--EIVRFRH-----NSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGD 209 (427)
T ss_dssp HHHHHSCTTCEEEEETTCC---HHHHHHHHHSCS--EEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESEETTTTE
T ss_pred HHHHhcCCCCEEEECCccc---HHHHHHHHHcCC--eeEEeCC-----CCHHHHHHHHHhccCCCCeEEEEcCCCCCCCC
Confidence 9999999999999766544 444455566676 4555554 4899999999864 5677777665554 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCC----CCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEY----PNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~----~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|+++|++||++||+||+|+.|.++. +.. .+....+|++++|+||++ |+.|||+++++++++.+.....
T Consensus 210 ~~~l~~l~~l~~~~g~~li~Dea~~~~~~~~~g~~~~~~~~~~~~~di~~~s~sK~~-g~~gG~v~~~~~l~~~l~~~~~ 288 (427)
T 2w8t_A 210 IAPLKEMVAVAKKHGAMVLVDEAHSMGFFGPNGRGVYEAQGLEGQIDFVVGTFSKSV-GTVGGFVVSNHPKFEAVRLACR 288 (427)
T ss_dssp ECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTT-CSCCEEEEECCTTGGGGGGTCH
T ss_pred ccCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHhhcCCCcCCcEEEecchhhh-ccCCCEEEeCHHHHHHHHHhcc
Confidence 5589999999999999999999999876642 111 111224689999999999 7888999999998888776433
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
++.+++..++...+++.+..+... ..++.++++.++++++.+.|.+.|+++..++..++++|+.+++.....++...++
T Consensus 289 ~~~~~~~~~~~~~aa~~~al~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~ 367 (427)
T 2w8t_A 289 PYIFTASLPPSVVATATTSIRKLM-TAHEKRERLWSNARALHGGLKAMGFRLGTETCDSAIVAVMLEDQEQAAMMWQALL 367 (427)
T ss_dssp HHHSSCCCCHHHHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHTCEESCSSCCSSEEEEEESSHHHHHHHHHHHH
T ss_pred cccccCCCCHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCcccCCCCCCCEEEEEECCHHHHHHHHHHHH
Confidence 333333344455555444444443 4567889999999999999998888875322256788988865333445666666
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++ ||.+.++..|..+.+ .+++|++++..++.
T Consensus 368 ~~-Gi~v~~~~~~~~~~~---~~~lRi~~~~~~t~ 398 (427)
T 2w8t_A 368 DG-GLYVNMARPPATPAG---TFLLRCSICAEHTP 398 (427)
T ss_dssp HT-TEECEEECTTTSCTT---CEEEEEECCTTCCH
T ss_pred HC-CeEEeeeCCCCCCCC---CeEEEEEeCCCCCH
Confidence 65 999999887776543 46799999886554
No 28
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}
Probab=99.90 E-value=5.6e-23 Score=246.63 Aligned_cols=317 Identities=22% Similarity=0.286 Sum_probs=221.7
Q ss_pred ceeeeecCCCC----cHHHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYT----SLAVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++ +++ ++.+.+++.+.+. .+..+++...+. +..+.. ..+++++++++|.++.++++ +|++|+.
T Consensus 45 ~id~~~~-~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~----~~l~~~la~~~~~~~~i~~~-sGt~a~~ 117 (399)
T 3tqx_A 45 VLNFCAN-NYLGLADHPALIKTAQTVVE-QYGFGMASVRFICGTQTIH----KELEKDISEFLGTDDTILYS-SCFDANG 117 (399)
T ss_dssp EEECSSC-CTTSCTTCHHHHHHHHHHHH-HHCSCCCSCCCCCCCBHHH----HHHHHHHHHHHTCSEEEEES-CHHHHHH
T ss_pred EEEeecc-CcccccCCHHHHHHHHHHHH-HhCCCCCCcCccccCchHH----HHHHHHHHHHHCCCcEEEEC-chHHHHH
Confidence 3555555 543 3669999888875 354444433333 223333 44555899999988777776 8999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~ 178 (1342)
.++.+++++||+|++..+.| .+....+...|. +++.++. +|++++++.+++. +++++++++++++
T Consensus 118 ~~l~~~~~~gd~v~~~~~~~---~~~~~~~~~~g~--~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~np 187 (399)
T 3tqx_A 118 GLFETLLGPEDAIISDELNH---ASIIDGIRLCKA--QRYRYKN-----NAMGDLEAKLKEADEKGARFKLIATDGVFSM 187 (399)
T ss_dssp TTHHHHCCTTCEEEEETTCC---HHHHHHHHSCCS--EEEEECT-----TCTTHHHHHHHHHHTTTCSSEEEEEESEETT
T ss_pred HHHHHhcCCCCEEEECCccc---HHHHHHHHHcCC--ceeEeCC-----CCHHHHHHHHHhhhccCCCceEEEEeCCCCC
Confidence 99999999999999776544 444555566676 4555554 3778888888763 5777777776666
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-----CCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-----NPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-----~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...++++|+++|++||++||+|++|+.|.++..... +.....|++++|+||+++|+.|||+++++++++.+..
T Consensus 188 tG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~~g~~gG~~~~~~~~~~~~~~ 267 (399)
T 3tqx_A 188 DGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRN 267 (399)
T ss_dssp TTEECCHHHHHHHHHHTTCEEEEECTTTTTTSSTTSCCHHHHHTCTTCCSEEEEESSSSSCSSCCEEEEECHHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHcCCEEEEECCccccccCCCCCchHHhhCCCCCCcEEEecchHhcccCceEEEEcCHHHHHHHHH
Confidence 345899999999999999999999976654321100 1112468999999999965899999999999888876
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
....+.++++.++...+++.+..+...++.++.++++.++++++.+.|.+.|+++. ++.++++|+.++......++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~~~~ 345 (399)
T 3tqx_A 268 RSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLGFQLV--PGNHPIIPVMLGDAQLATNMAD 345 (399)
T ss_dssp HCHHHHSSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCSSSEEEEEEECHHHHHHHHH
T ss_pred hCcceeccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcC--CCCCCEEEEEeCCHHHHHHHHH
Confidence 54444333333444444444444443236788899999999999999999888764 3556788888875433456666
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+++ +||.+.+..++..+.+ .+++|++++..++
T Consensus 346 ~l~~-~gi~v~~~~~~~~~~~---~~~iRi~~~~~~~ 378 (399)
T 3tqx_A 346 HLLQ-EGIYVVGFSYPVVPMG---KARIRVQMSAVHT 378 (399)
T ss_dssp HHHH-TTEECCEECTTTSCTT---CEEEEEECCTTCC
T ss_pred HHHH-CCCEEeeeCCCCCCCC---CceEEEEeecCCC
Confidence 7766 5999998766654432 4679999986554
No 29
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}
Probab=99.89 E-value=1.5e-21 Score=235.09 Aligned_cols=314 Identities=15% Similarity=0.141 Sum_probs=221.8
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~a 105 (1342)
..+.+.+++..+++.+.+++.+.+. ++ + ......+.+.+++++++++|.+. .+++++||++|+..+
T Consensus 13 ~~~~~~pgp~~~~~~v~~a~~~~~~-----~~-----~--~~~~~~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~ 80 (411)
T 3nnk_A 13 SRLLMGPGPINADPRVLRAMSSQLI-----GQ-----Y--DPAMTHYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAI 80 (411)
T ss_dssp CCEEESSSCCCCCHHHHHHHTSCCC-----CT-----T--CHHHHHHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHH
T ss_pred cceeecCCCCCCCHHHHHHhhcccc-----cc-----c--cHHHHHHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHH
Confidence 3466777888888889888765431 11 1 12233566677889999999874 356776899999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.+++.+||+|++....+.+.. ....+...|. +++.++.++++.+|++++++++++.++++|++++++++ ...++
T Consensus 81 ~~~~~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 157 (411)
T 3nnk_A 81 LVSAIRPGDKVLVPVFGRFGHL-LCEIARRCRA--EVHTIEVPWGEVFTPDQVEDAVKRIRPRLLLTVQGDTSTTMLQPL 157 (411)
T ss_dssp HHHHCCTTCEEEEEECSHHHHH-HHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHHhcCCCCEEEEecCCchHHH-HHHHHHHcCC--eEEEEecCCCCCCCHHHHHHHHhhCCCeEEEEeCCCCCcceeccH
Confidence 9999999999998775443211 4445566677 45555667778899999999998756677666665555 44589
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++|+++|++||++||+|++|+.+...... ....+|++++|+||++.|+.| |++++++++++.+....
T Consensus 158 ~~i~~l~~~~~~~li~Dea~~~~~~~~~~---~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~g~ 234 (411)
T 3nnk_A 158 AELGEICRRYDALFYTDATASLGGNPLET---DVWGLDAVSAGMQKCLGGPSGTSPITLSARMEEAIRRRKCVEEGIRTD 234 (411)
T ss_dssp TTHHHHHHHHTCEEEEECTTTBTTBCCCT---TTTTCSEEECCSTTTTCCCSSEEEEEECHHHHHHHHTTCCCCGGGCCT
T ss_pred HHHHHHHHHcCCEEEEECCcccCCcccch---hccCCcEEEecCccccCCCCceEEEEECHHHHHHHhhccccccccccc
Confidence 99999999999999999998875441110 011368999999999768878 99999999988876532
Q ss_pred --------------------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 254 --------------------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 254 --------------------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
..+..++++.....++..++......++++..+++.++++++.+.|.+.|+++.
T Consensus 235 ~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~ 314 (411)
T 3nnk_A 235 AHRDGDEEMIYSNYFDLGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLETF 314 (411)
T ss_dssp TCCCCSSCCCSCSTTCHHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred ccccccCCCCcccccchHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEeC
Confidence 011224455556666655555544434788899999999999999999888765
Q ss_pred eCCC--CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGT--KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~--~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.. ..+++++.++......++...+++++||.+.++..+ ...+++|+++..
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~~------~~~~~iRi~~~~ 368 (411)
T 3nnk_A 315 GDLKHKMNNVLGVVIPQGINGDQARKLMLEDFGIEIGTSFGP------LHGKVWRIGTMG 368 (411)
T ss_dssp SCGGGBCSSEEEEECCTTCCHHHHHHHHHHHHSEEEEECCGG------GTTTEEEEECCG
T ss_pred CCcccccccEEEEECCCCCCHHHHHHHHHHhcCeEEeCccCC------CCCCEEEEeCcc
Confidence 4221 256788888654445566777777779999875322 123579999833
No 30
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}
Probab=99.89 E-value=6.5e-22 Score=237.62 Aligned_cols=318 Identities=19% Similarity=0.190 Sum_probs=219.1
Q ss_pred CceeeeecCC--C-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHH
Q psy13354 28 NNIELIASEN--Y-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n--~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~ 104 (1342)
..+.+..+++ + .++.+.+++.+.+.. +..++....+ ..+..++.+++++++++++|.+++++++ ||++|+..
T Consensus 44 ~~idl~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~---~~g~~~~~~~l~~~la~~~g~~~v~~~~-ggt~a~~~ 118 (398)
T 3a2b_A 44 RVLMFGSNSYLGLTTDTRIIKAAQDALEK-YGTGCAGSRF---LNGTLDIHVELEEKLSAYVGKEAAILFS-TGFQSNLG 118 (398)
T ss_dssp EEEECSCSCTTCGGGCHHHHHHHHHHHHH-HCSCCCSBTT---TTCCCHHHHHHHHHHHHHHTCSEEEEES-SHHHHHHH
T ss_pred eEEEeecccccCCCCCHHHHHHHHHHHHH-cCCCCCCcCc---ccCCcHHHHHHHHHHHHHhCCCcEEEEC-CHHHHHHH
Confidence 3466666654 2 556699998888743 3222221111 1122356677777999999987555555 99999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC--c
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~--~ 179 (1342)
++.++++|||+|++..+.|+ +....+...|. +++.++. +|++++++.+++. ++++++++++++| .
T Consensus 119 ~~~~~~~~gd~V~~~~p~~~---~~~~~~~~~g~--~~~~v~~-----~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~ 188 (398)
T 3a2b_A 119 PLSCLMGRNDYILLDERDHA---SIIDGSRLSFS--KVIKYGH-----NNMEDLRAKLSRLPEDSAKLICTDGIFSMEGD 188 (398)
T ss_dssp HHHHSSCTTCEEEEETTCCH---HHHHHHHHSSS--EEEEECT-----TCHHHHHHHHHTSCSSSCEEEEEESBCTTTCC
T ss_pred HHHHHhCCCCEEEECCccCH---HHHHHHHHcCC--ceEEeCC-----CCHHHHHHHHHhhccCCceEEEEeCCCCCCCC
Confidence 99999999999997775554 44455566676 4555554 4899999999874 5677777776665 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCC----CCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYP----NPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~----~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
..++++|.++|++||++||+||+|+.+.++. +... +..+.+|++++|+||++ ++.|||+++++++++.+.....
T Consensus 189 ~~~~~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~GG~~~~~~~~~~~l~~~~~ 267 (398)
T 3a2b_A 189 IVNLPELTSIANEFDAAVMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSL-ASLGGFVAGDADVIDFLKHNAR 267 (398)
T ss_dssp BCCHHHHHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT-CSSCEEEEECHHHHHHHHHHCH
T ss_pred ccCHHHHHHHHHHcCcEEEEECCCcccccCCCCCchHhhcCCCcCCeEEEecccccc-cCCCcEEEeCHHHHHHHHHhcc
Confidence 4589999999999999999999998775522 1111 00112589999999999 7888999999998888876332
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
.+..+++.++.+.+++.+..+... +.++.++++.++++++.+.|.+.|+++.. +.++++|+.++......++...++
T Consensus 268 ~~~~~~~~~~~~~a~~~~~l~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~g~~~~~~~~~~~~~~~l~~~l~ 344 (398)
T 3a2b_A 268 SVMFSASMTPASVASTLKALEIIQ-NEPEHIEKLWKNTDYAKAQLLDHGFDLGA--TESPILPIFIRSNEKTFWVTKMLQ 344 (398)
T ss_dssp HHHSSBCCCHHHHHHHHHHHHHHH-HCTHHHHHHHHHHHHHHHHHHHTTCCBCS--CCSSEEEEECCCHHHHHHHHHHHH
T ss_pred cceecCCCCHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHHHHhcCCCcCC--CCCCEEEEEcCCHHHHHHHHHHHH
Confidence 333333445555543323333332 45567889999999999999998877643 346889998864222345666666
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++ ||.+.++..|..+. ..+++|++++..++
T Consensus 345 ~~-gi~v~~~~~~~~~~---~~~~iRis~~~~~~ 374 (398)
T 3a2b_A 345 DD-GVFVNPVVSPAVPA---EESLIRFSLMATHT 374 (398)
T ss_dssp HT-TEECEEECTTTSCG---GGCEEEEECCTTCC
T ss_pred HC-CcEEEeeCCCCCCC---CCceEEEEEeCCCC
Confidence 65 99999877665432 24679999987544
No 31
>3v76_A Flavoprotein; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: FDA; 2.51A {Sinorhizobium meliloti}
Probab=99.89 E-value=1.3e-25 Score=270.18 Aligned_cols=251 Identities=15% Similarity=0.129 Sum_probs=181.0
Q ss_pred hhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCC
Q psy13354 804 VDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGD 882 (1342)
Q Consensus 804 ~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~ 882 (1342)
.++..+.+.+.+.+++ .+++|+.+ +|++|..+++. .+|.+.+| .+.||.||+||| |.+++..|++|+
T Consensus 129 ~~~~~l~~~L~~~l~~-~Gv~i~~~~~V~~i~~~~~~-~~V~~~~g-~i~ad~VIlAtG---------~~S~p~~gs~g~ 196 (417)
T 3v76_A 129 HSAKDIIRMLMAEMKE-AGVQLRLETSIGEVERTASG-FRVTTSAG-TVDAASLVVASG---------GKSIPKMGATGL 196 (417)
T ss_dssp SCHHHHHHHHHHHHHH-HTCEEECSCCEEEEEEETTE-EEEEETTE-EEEESEEEECCC---------CSSCGGGTCCCH
T ss_pred CCHHHHHHHHHHHHHH-CCCEEEECCEEEEEEEeCCE-EEEEECCc-EEEeeEEEECCC---------CccCCCCCCCcH
Confidence 3455566666666654 48999765 79999888775 57888888 899999999999 778888887765
Q ss_pred cchHHHHHHHH-HcCCCccccccCCC------------cccccCccccccce----eecCCCCCCCcccccCCCCCCCCc
Q psy13354 883 FSTTSLAKRLK-ELQLSHGRLKTGTP------------PRIDKRTIDFSKME----EQIGDFDPVPVFSVLGNINLHPKQ 945 (1342)
Q Consensus 883 ~~s~~l~~~l~-~~g~~~~~~~~~~~------------~r~~~~si~~~~~~----~~~~d~~~~~~f~~~~~~~~~~~~ 945 (1342)
+..+. ++|+++.++.++.. +.+.+.+++. .+. ...|| ++|||||++||+++ +
T Consensus 197 ------g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~~l~G~~~~~-~~~~~~~~~~~~-~lft~~G~sGp~il---~ 265 (417)
T 3v76_A 197 ------AYRIAEQFGLPVVETRPALVPLTLDQAQLAKLGALAGVAADA-EARFGKAAFREA-VLITHRGLSGPAIL---Q 265 (417)
T ss_dssp ------HHHHHHHTTCCEEEEEEESCCEECCHHHHHHTGGGTTCEEEE-EEEETTEEEEEE-EEECSSEEESHHHH---H
T ss_pred ------HHHHHHHCCCCEecccceeeeEEecCccccccccCCCCceeE-EEEECCEeeeee-eEEECCCcchHHHH---H
Confidence 44454 36776655554433 4455556542 111 23578 99999999999988 9
Q ss_pred cccchhhcchhHHHHHHhhcccCCCCcc-cc-c-cccCCCCCCcccccccCCCCCccceeEeecccccceeecCccccCC
Q psy13354 946 LSCFITHTNEKTHNIIRSEFKNSPIFSG-KI-E-SIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSL 1022 (1342)
Q Consensus 946 ~~c~~~~~~~~~~~~i~~~~~~~p~~~~-~~-~-~~g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g~~~~l 1022 (1342)
+|||+... ....+|+.|.++. ++ . -..++--.++. ...+...+-.|.+..++...+ ++....++
T Consensus 266 ~S~~~~~~-------~~~~id~~p~~~~~~~~~~~~~~~~~~~~~-----~~l~~~lp~~~~~~~~~~~~~-~~~~~~~~ 332 (417)
T 3v76_A 266 ISSYWREG-------EEIVLRLMPDIDIASILKGMRRANGRQAVQ-----TALADILPRRLAQFFADEAKL-TGRMLADL 332 (417)
T ss_dssp HTTTCCTT-------CCEEEEESTTSCHHHHHHHHHHHTCSSBHH-----HHHTTTSCHHHHHHHHHHTTC-TTCBGGGC
T ss_pred HHHHhhCC-------CEEEEECCCCCCHHHHHHHHHHhchhhhHH-----HHHHHHhhHHHHHHHHHhcCC-CCCchhhC
Confidence 99998652 2467888998872 11 0 00111111111 111112223344555555556 77788999
Q ss_pred CHHHHHHHHHhcccc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHHH------H
Q psy13354 1023 PFEAQIELVQSIDGM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEE------A 1086 (1342)
Q Consensus 1023 ~~~~q~~~~~~i~gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~e------A 1086 (1342)
++++..++++.|+.+ ++|+||+|||++++ |||+ |||||.+||||||||++|++|+++ |
T Consensus 333 ~~~~~~~l~~~l~~~~~~~~g~~~~~~a~vt~GGV~~~e--i~~~----tmesk~~~gLy~aGE~lD~~~~~GGynlq~a 406 (417)
T 3v76_A 333 SDKTIDALASSIQVWAVKPAGSEGYRTAEVTLGGVDTRA--LDSR----TMQAKEVPGLYFVGECVDVTGWLGGYNFQWA 406 (417)
T ss_dssp CHHHHHHHHHHHHSEEECCCEECCTTTCSEEEEEECGGG--BCTT----TCBBTTSTTEEECGGGBSEEECSSSHHHHHH
T ss_pred CHHHHHHHHHHhcCCEEEecccCCcceEEEeCCCCcccc--CChh----hccccCCCCeEEEEEeEecccCCCCHHHHHH
Confidence 999999999998865 99999999998888 9999 999999999999999999999884 9
Q ss_pred HHHHHHHHHH
Q psy13354 1087 ASQGLLAGLN 1096 (1342)
Q Consensus 1087 ~~~G~~Ag~n 1096 (1342)
|+||++||.+
T Consensus 407 ~stG~~ag~~ 416 (417)
T 3v76_A 407 WASGFVAGQD 416 (417)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhCc
Confidence 9999999975
No 32
>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}
Probab=99.89 E-value=1.7e-21 Score=233.42 Aligned_cols=319 Identities=11% Similarity=0.062 Sum_probs=218.2
Q ss_pred hccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHH
Q psy13354 25 RQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGS 99 (1342)
Q Consensus 25 ~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs 99 (1342)
..++.|.+..+.+.+ +|.+.+++.+.+.+.. ..|....+..++++++++++.+.+|.+ +.+++++||+
T Consensus 29 ~g~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~ 101 (391)
T 3h14_A 29 AGRRIIHMEVGQPGTGAPRGAVEALAKSLETDA-------LGYTVALGLPALRQRIARLYGEWYGVDLDPGRVVITPGSS 101 (391)
T ss_dssp TTCCCEECCCSSCSSCSCHHHHHHHHHHHC-----------------CCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHH
T ss_pred cCCCeEEccCCCCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCChHHHHHHHHHHHHHHhCCCCCHHHEEEecChH
Confidence 345678888887654 4558888887774211 123333345688888888888777733 5566666999
Q ss_pred HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 100 QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 100 ~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+|+..++.+++++||+|++..+.+ ......+...|..+..++++.+.++.+|++++++. ++++++++++++|
T Consensus 102 ~al~~~~~~l~~~gd~vl~~~p~~---~~~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~----~~~~v~i~~p~npt 174 (391)
T 3h14_A 102 GGFLLAFTALFDSGDRVGIGAPGY---PSYRQILRALGLVPVDLPTAPENRLQPVPADFAGL----DLAGLMVASPANPT 174 (391)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCC---HHHHHHHHHTTCEEEEEECCGGGTTSCCHHHHTTS----CCSEEEEESSCTTT
T ss_pred HHHHHHHHHhcCCCCEEEEcCCCC---ccHHHHHHHcCCEEEEeecCcccCCCCCHHHHHhc----CCeEEEECCCCCCC
Confidence 999999999999999999777544 44445566777744444333223467899999876 4555555555555
Q ss_pred cc-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHH
Q psy13354 179 QY-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKII 249 (1342)
Q Consensus 179 ~~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l 249 (1342)
+. . ++++|+++|++||++||+|++|+.+.+... ...... ..+++++|+||++ |+.| ||+++++++++.+
T Consensus 175 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~-~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~ 252 (391)
T 3h14_A 175 GTMLDHAAMGALIEAAQAQGASFISDEIYHGIEYEAK-AVTALELTDECYVINSFSKYF-SMTGWRVGWMVVPEDQVRVV 252 (391)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSSC-CCCGGGTCSSSEEEEESSSTT-CCTTSCCEEEECCGGGHHHH
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEECcchhcccCCC-CcChhhcCCCEEEEEechhcc-CCccceeEEEEeCHHHHHHH
Confidence 22 2 499999999999999999999976544321 222221 2468899999999 5555 9999999998888
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-CCHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK-ITGK 328 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~-~~~~ 328 (1342)
......+.++ ++.+.+.++..++. ..+++++.++++.++++++.+.|.+.|+.....+.+++++|+.++... ...+
T Consensus 253 ~~~~~~~~~~-~~~~~~~a~~~~l~--~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (391)
T 3h14_A 253 ERIAQNMFIC-APHASQVAALAALD--CDAELQANLDVYKANRKLMLERLPKAGFTRIAPPDGAFYVYADVSDLTDDSRA 329 (391)
T ss_dssp HHHHHHTTCC-CCHHHHHHHHHHTT--CHHHHHHHHHHHHHHHHHHHHHHHHHTCCCBCCCCBTTEEEEECTTTCSCHHH
T ss_pred HHHHhhhccC-CCHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCeeEEEEEecCccCCCHHH
Confidence 7644333333 33444444444443 334678888999999999999999887665444566788999887633 3456
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+...+++++||.+.++..++.+.. .+++|++++.
T Consensus 330 ~~~~l~~~~gi~v~~g~~~~~~~~---~~~iRis~~~ 363 (391)
T 3h14_A 330 FAAEILEKAGVAVTPGLDFDPERG---AGTLRFSYAR 363 (391)
T ss_dssp HHHHHHHHHCEECEEGGGTCTTTG---GGEEEEECCS
T ss_pred HHHHHHHHCCEEEcCchhhCCCCC---CCeEEEEecC
Confidence 777778777999998766654222 5689999887
No 33
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*
Probab=99.89 E-value=1e-21 Score=234.69 Aligned_cols=317 Identities=15% Similarity=0.113 Sum_probs=215.0
Q ss_pred CceeeeecCC---CCcHHHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 28 NNIELIASEN---YTSLAVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 28 ~~i~l~a~~n---~l~~~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
..+.+.++.+ ..++.+.+++.+.+.. +..++..+.+. +......+ +++.+++++|.++.++++ +|++|+.
T Consensus 40 ~~id~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~~i~~~-sGt~a~~ 113 (384)
T 1bs0_A 40 QYLNFSSNDYLGLSHHPQIIRAWQQGAEQ-FGIGSGGSGHVSGYSVVHQA----LEEELAEWLGYSRALLFI-SGFAANQ 113 (384)
T ss_dssp EEEECSCCCTTSGGGCHHHHHHHHHHHHH-HCSCCCSBTTTTCCCHHHHH----HHHHHHHHHTCSEEEEES-CHHHHHH
T ss_pred eEEEeeccCccCCCCCHHHHHHHHHHHHH-hCCCCCCcCcccCChHHHHH----HHHHHHHHhCCCcEEEeC-CcHHHHH
Confidence 3466666654 3556699998888753 33233322222 23344444 455888889988666666 8999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC--CeEEEEcCCCCC--c
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK--PKLIIAGASAYS--Q 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~--~~liv~~~s~~~--~ 179 (1342)
.++.+++++||.|++....|+ +....+...|. +++.++. .|++++++.+++.. +++++++++++| .
T Consensus 114 ~~~~~~~~~gd~v~~~~~~~~---~~~~~~~~~g~--~~~~~~~-----~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~ 183 (384)
T 1bs0_A 114 AVIAAMMAKEDRIAADRLSHA---SLLEAASLSPS--QLRRFAH-----NDVTHLARLLASPCPGQQMVVTEGVFSMDGD 183 (384)
T ss_dssp HHHHHHCCTTCEEEEETTCCH---HHHHHHHTSSS--EEEEECT-----TCHHHHHHHHHSCCSSCEEEEEESBCTTTCC
T ss_pred HHHHHhCCCCcEEEEcccccH---HHHHHHHHcCC--CEEEeCC-----CCHHHHHHHHHhcCCCCeEEEEeCCCCCCCC
Confidence 999999999999997765544 44445556676 4455554 38999999988642 567777666655 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhh-cCCC-CCCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIA-AGEY-PNPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~-~~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~ 256 (1342)
..++++|.++|++||++||+|++|+.|.++ .+.. ...+ ...|++++|+||++ ++.|||+++++++++.+......+
T Consensus 184 ~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~di~~~s~sK~~-~~~GG~~~~~~~~~~~l~~~~~~~ 262 (384)
T 1bs0_A 184 SAPLAEIQQVTQQHNGWLMVDDAHGTGVIGEQGRGSCWLQKVKPELLVVTFGKGF-GVSGAAVLCSSTVADYLLQFARHL 262 (384)
T ss_dssp BCCHHHHHHHHHHTTCEEEEECTTTTTTSSGGGCCHHHHTTCCCSEEEEESSSTT-SSCCEEEEECHHHHHHHHHHCHHH
T ss_pred ccCHHHHHHHHHHcCcEEEEECCcccceecCCCCchHHhcCCCCcEEEeeccchh-hccCcEEEeCHHHHHHHHHhchhh
Confidence 458999999999999999999999877543 1111 1111 13689999999999 788899999999888877643233
Q ss_pred ccc-CCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 257 IQG-GPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 257 ~~~-~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
..+ +++...++++..++ +...+ +.++..+++.++++++.+.|.+.|+++.. ..++++|+.++......++...++
T Consensus 263 ~~~~~~~~~~~~~~~~al-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~~~~l~~~l~ 339 (384)
T 1bs0_A 263 IYSTSMPPAQAQALRASL-AVIRSDEGDARREKLAALITRFRAGVQDLPFTLAD--SCSAIQPLIVGDNSRALQLAEKLR 339 (384)
T ss_dssp HSSBCCCHHHHHHHHHHH-HHHHSHHHHHHHHHHHHHHHHHHHHHTTSSCEECS--CCSSBCCEEEESHHHHHHHHHHHH
T ss_pred hcCCCCCHHHHHHHHHHH-HHHhccccHHHHHHHHHHHHHHHHHHHhcCCcccC--CCCCEEEEEeCCHHHHHHHHHHHH
Confidence 333 23333444434344 33332 55678899999999999999998887742 456677887754222345666666
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +||.+.++..|+.+.. .+.+|++++..++
T Consensus 340 ~-~gi~v~~~~~~~~~~~---~~~~Ri~~~~~~~ 369 (384)
T 1bs0_A 340 Q-QGCWVTAIRPPTVPAG---TARLRLTLTAAHE 369 (384)
T ss_dssp H-TTEECCEECTTSSCTT---CEEECCBCCTTCC
T ss_pred H-CCcEEEeecCCCCCCC---CceEEEEEcCCCC
Confidence 5 4999998876654322 4679999987544
No 34
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}
Probab=99.89 E-value=1.9e-21 Score=232.03 Aligned_cols=311 Identities=14% Similarity=0.135 Sum_probs=219.6
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV 109 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al 109 (1342)
..++...+++.+.+++.+.+.+ .|+ ....++.+++++++++++|.+ +.+++++||++|+..++.++
T Consensus 24 ~~~~~~~~~~~v~~a~~~~~~~----------~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l 91 (386)
T 2dr1_A 24 FTAGPVACFPEVLEIMKVQMFS----------HRS--KEYRKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG 91 (386)
T ss_dssp CCSSSCCCCHHHHHHTTSCCCC----------TTS--HHHHHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH
T ss_pred ecCCCcCCcHHHHHHHhccccc----------ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh
Confidence 4566677888888886654421 121 223577888888999999987 55667779999999999999
Q ss_pred cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-cCCeEEEEcCCCCC--cccCHHHH
Q psy13354 110 LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-NKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 110 ~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
+++||+|+++...|++. .....+...|. +++.++.+.++.+|++++++.+.+ .+++++++++++++ ...++++|
T Consensus 92 ~~~gd~vl~~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i 168 (386)
T 2dr1_A 92 VSKGGKVLVTIIGAFGK-RYKEVVESNGR--KAVVLEYEPGKAVKPEDLDDALRKNPDVEAVTITYNETSTGVLNPLPEL 168 (386)
T ss_dssp SCTTCEEEEEESSHHHH-HHHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECCHHHH
T ss_pred hcCCCeEEEEcCCchhH-HHHHHHHHhCC--ceEEEecCCCCCCCHHHHHHHHhcCCCCcEEEEEeecCCcchhCCHHHH
Confidence 99999999877555432 13444566676 455556666788999999999964 35666666665544 44589999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc------------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA------------ 252 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~------------ 252 (1342)
.++|++||++||+|++|+.|.... +... .+|++++|+||+++++.| |++++++++++.+...
T Consensus 169 ~~l~~~~~~~li~D~a~~~~~~~~----~~~~~~~di~~~s~sK~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (386)
T 2dr1_A 169 AKVAKEHDKLVFVDAVSAMGGADI----KFDKWGLDVVFSSSQKAFGVPPGLAIGAFSERFLEIAEKMPERGWYFDIPLY 244 (386)
T ss_dssp HHHHHHTTCEEEEECTTTBTTBCC----CTTTTTCSEEEEETTSTTCCCSSCEEEEECHHHHHHHTTCTTCCSTTCHHHH
T ss_pred HHHHHHcCCeEEEEccccccCccc----cccccCCcEEEEeccccccCCCceEEEEECHHHHHHHhcCCCCceEEeHHHH
Confidence 999999999999999998765421 1111 369999999999966666 9999999888776320
Q ss_pred ---c--CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEccCCC
Q psy13354 253 ---V--FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLRNKK 324 (1342)
Q Consensus 253 ---~--~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~~~~ 324 (1342)
. .....++++.+.+.++..++...... ++++..+++.++++++.+.|.+.|+++..+.. ..+++|+.++...
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~ 324 (386)
T 2dr1_A 245 VKYLKEKESTPSTPPMPQVFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIGLDILAEPGHESPTITAVLTPPGI 324 (386)
T ss_dssp HHHHHHHSSCSSCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCTTCBCSSEEEEECCTTC
T ss_pred HHhhccCCCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCeeCcCccccCCceEEEEcCCCC
Confidence 0 11223345556666666565544333 47788999999999999999988877644211 3678888887433
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...++...++++ ||.+.++..+. ..+.+|++++..++
T Consensus 325 ~~~~~~~~l~~~-gi~v~~~~~~~------~~~~iRi~~~~~~~ 361 (386)
T 2dr1_A 325 KGDEVYEAMRKR-GFELAKGYGSV------KEKTFRIGHMGYMK 361 (386)
T ss_dssp CHHHHHHHHHHT-TEECEECCGGG------TTTEEEEECCSSCC
T ss_pred CHHHHHHHHHHC-CeEEecCcccc------CCCEEEEECCCCCC
Confidence 345666666665 99999865332 13579999987555
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.88 E-value=1.7e-21 Score=213.45 Aligned_cols=219 Identities=27% Similarity=0.437 Sum_probs=189.9
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
.+|..+|+|..|++++|++.+++.+.+.+..+..++ ++|+||+|+|||++++.+++.+.+..
T Consensus 5 ~~~~~~~~p~~~~~~~g~~~~~~~l~~~l~~~~~~~-~ll~G~~G~GKT~l~~~l~~~~~~~~----------------- 66 (226)
T 2chg_A 5 EIWVEKYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGEN----------------- 66 (226)
T ss_dssp CCHHHHTSCSSGGGCCSCHHHHHHHHHHHHTTCCCC-EEEECSTTSSHHHHHHHHHHHHHGGG-----------------
T ss_pred hhHHHhcCCCCHHHHcCcHHHHHHHHHHHhCCCCCe-EEEECCCCCCHHHHHHHHHHHHhccc-----------------
Confidence 368899999999999999999999999999887766 89999999999999999999986421
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhc-Cc-cCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYA-PI-NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~-p~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
....++.++.+...+.+.+.+.+...... +. .+.+.+|+|||++.+..+..+.|++++++++..+++|+++
T Consensus 67 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~~~~~~~l~~~l~~~~~~~~~i~~~ 139 (226)
T 2chg_A 67 -------WRDNFIEMNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALTADAQAALRRTMEMYSKSCRFILSC 139 (226)
T ss_dssp -------GGGGEEEEETTCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSCHHHHHHHHHHHHHTTTTEEEEEEE
T ss_pred -------cccceEEeccccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcCHHHHHHHHHHHHhcCCCCeEEEEe
Confidence 11246677776666666666666555433 22 3567899999999999999999999999988899999999
Q ss_pred CCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHH
Q psy13354 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNS 616 (1342)
Q Consensus 537 ~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~ 616 (1342)
+....+.+++.+|+..+.|.+++.+++.+++..++...+..+++++++.+++.++||+|.+.+.++++..++ +.||.++
T Consensus 140 ~~~~~~~~~l~~r~~~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~~-~~I~~~~ 218 (226)
T 2chg_A 140 NYVSRIIEPIQSRCAVFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINALQGAAAIG-EVVDADT 218 (226)
T ss_dssp SCGGGSCHHHHTTSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SCBCHHH
T ss_pred CChhhcCHHHHHhCceeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHHHHHHHHHHHHhcC-ceecHHH
Confidence 999899999999999999999999999999999999999999999999999999999999999999988776 6899999
Q ss_pred HHHHhcc
Q psy13354 617 MQEMLSI 623 (1342)
Q Consensus 617 V~~~v~~ 623 (1342)
|+++++.
T Consensus 219 v~~~~~~ 225 (226)
T 2chg_A 219 IYQITAT 225 (226)
T ss_dssp HHHHHHT
T ss_pred HHHHhcC
Confidence 9998863
No 36
>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A
Probab=99.88 E-value=8.2e-22 Score=237.75 Aligned_cols=312 Identities=16% Similarity=0.182 Sum_probs=217.3
Q ss_pred eecCCCC----cHHHHHHHhHHHHhccccCCCCCCc-cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH
Q psy13354 33 IASENYT----SLAVMEAQGTLLTNKYAEGYPGKRY-YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 33 ~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~-~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~ 107 (1342)
+++++|+ +|.+.+++.+.+. .+..++..+.. ++......++++ ++++++|.+.+++++ +|++|+..++.
T Consensus 64 ~~s~~~l~~~~~p~v~~a~~~~l~-~~~~~~~~~~~~~g~~~~~~~l~~----~la~~~g~~~~i~~~-sGt~a~~~~l~ 137 (409)
T 3kki_A 64 LQSNDYLALANHPLIKARLAKSLL-EEQQSLFMSASFLQNDYDKPMIEK----RLAKFTGFDECLLSQ-SGWNANVGLLQ 137 (409)
T ss_dssp CCCSCTTCCTTCHHHHHHHHHHHH-SCCCCCCSBGGGGCSTTTSCHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHH
T ss_pred eeccCccCCcCCHHHHHHHHHHHH-HcCCCCCccccccCCcHHHHHHHH----HHHHHhCCCeEEEec-chHHHHHHHHH
Confidence 3445653 4669999888885 44333332222 232333344444 889999998877776 99999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
+++++||.|++....| .+....+...|. ++++++. .|++++++.+.+.+++++++++++++ ...++++
T Consensus 138 ~~~~~gd~Vl~~~~~~---~~~~~~~~~~g~--~~~~~~~-----~d~~~le~~l~~~~~~~vi~~~~~nptG~~~~l~~ 207 (409)
T 3kki_A 138 TICQPNTNVYIDFFAH---MSLWEGARYANA--QAHPFMH-----NNCDHLRMLIQRHGPGIIVVDSIYSTLGTIAPLAE 207 (409)
T ss_dssp HHCCTTCEEEEETTSC---HHHHHHHHHTTC--EEEEECT-----TCHHHHHHHHHHHCSCEEEEESBCTTTCCBCCHHH
T ss_pred HhcCCCCEEEECCCcC---HHHHHHHHHcCC--eEEEecC-----CCHHHHHHHHHhcCCeEEEECCCCCCCCCcCCHHH
Confidence 9999999999766544 444445556666 4555554 48999999998766788888776665 4558999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcC-C----CCCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccC
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAG-E----YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGG 260 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~-~----~~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~ 260 (1342)
|+++|++||++||+||+|+.|.++.. . ..+....+|++++|+||++ ++.||++++++++++.+.....++.+++
T Consensus 208 l~~la~~~~~~li~De~~~~g~~g~~g~~~~~~~~~~~~~di~~~s~sK~~-~~~gg~v~~~~~~~~~~~~~~~~~~~~~ 286 (409)
T 3kki_A 208 LVNISKEFGCALLVDESHSLGTHGPNGAGLLAELGLTREVHFMTASLAKTF-AYRAGAIWCNNEVNRCVPFISYPAIFSS 286 (409)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSSGGGCCHHHHHTCGGGCSEEEEESSSTT-CSSCEEEEESSSGGGTHHHHCHHHHHSB
T ss_pred HHHHHHHcCCEEEEECCccccccCCCCCcchhhcCCCCCCCEEEeecchhh-CCCceEEEECHHHHHHHHHhCcCccccC
Confidence 99999999999999999987655321 1 0111123689999999999 5558999999988877766444444443
Q ss_pred CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 261 PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 261 ~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
..++..++++.+..+... ..+++++++.++++++.+.|.+.|+++. ..++++|+.++......++...++++ ||.
T Consensus 287 ~~~~~~~aa~~aal~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~-Gv~ 361 (409)
T 3kki_A 287 TLLPYEAAGLETTLEIIE-SADNRRQHLDRMARKLRIGLSQLGLTIR---SESQIIGLETGDERNTEKVRDYLESN-GVF 361 (409)
T ss_dssp CCCHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHHHHHHTTTCCCC---CSSSEEEEEEESHHHHHHHHHHHHHT-TEE
T ss_pred CCcHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHHHHHcCCccC---CCCCEEEEEeCCHHHHHHHHHHHHHC-Cce
Confidence 334444444444444443 2256788899999999999999888763 36778888886543344566666665 999
Q ss_pred eeeccCCCCCCCccccccccccccccccc
Q psy13354 341 CNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 341 v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+...|..+.+ .+++|++++..++.
T Consensus 362 v~~~~~~~~~~~---~~~iRi~~~~~~t~ 387 (409)
T 3kki_A 362 GSVFCRPATSKN---KNIIRLSLNSDVND 387 (409)
T ss_dssp CEEECTTSSCTT---CEEEEEECCTTCCH
T ss_pred EeeeCCCCcCCC---CcEEEEEccCCCCH
Confidence 998776655433 57899999876553
No 37
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4
Probab=99.88 E-value=1.2e-21 Score=235.35 Aligned_cols=316 Identities=20% Similarity=0.237 Sum_probs=214.3
Q ss_pred ceeeeecCCCC----cHHHHHHHhHHHHhccccCCCCCCcc-CCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENYT----SLAVMEAQGTLLTNKYAEGYPGKRYY-GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l----~~~v~eal~~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++ +++ ++.+.+++.+.+. .+..++....+. +......+ +++.+++++|.++.++++ +|++|+.
T Consensus 47 ~id~~~~-~~~g~~~~~~v~~a~~~~~~-~~~~~~~~~~~~~g~~~~~~~----l~~~la~~~g~~~~i~~~-sGs~a~~ 119 (401)
T 1fc4_A 47 VINFCAN-NYLGLANHPDLIAAAKAGMD-SHGFGMASVRFICGTQDSHKE----LEQKLAAFLGMEDAILYS-SCFDANG 119 (401)
T ss_dssp EEECCCS-CTTSCTTCHHHHHHHHHHHH-HHCSCCCSCHHHHCCBHHHHH----HHHHHHHHHTCSEEEEES-CHHHHHH
T ss_pred EEEeecc-CcccccCCHHHHHHHHHHHH-HhCCCCCCCCcccCCcHHHHH----HHHHHHHHhCCCcEEEeC-ChHHHHH
Confidence 3555555 444 5669999888874 443333222221 11333344 555888899988665555 9999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS 178 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~ 178 (1342)
.++.+++++||.|++....|+ +....+...|. +++.++. .|++++++.+++. +++++++++++++
T Consensus 120 ~~~~~~~~~gd~v~~~~~~~~---~~~~~~~~~g~--~~~~~~~-----~d~~~l~~~l~~~~~~~~~~~~v~~~~~~np 189 (401)
T 1fc4_A 120 GLFETLLGAEDAIISDALNHA---SIIDGVRLCKA--KRYRYAN-----NDMQELEARLKEAREAGARHVLIATDGVFSM 189 (401)
T ss_dssp TTHHHHCCTTCEEEEETTCCH---HHHHHHHTSCS--EEEEECT-----TCHHHHHHHHHHHHHTTCSSEEEEEESEETT
T ss_pred HHHHHHcCCCCEEEEcchhHH---HHHHHHHHcCC--ceEEECC-----CCHHHHHHHHHHhhccCCCceEEEEeCCcCC
Confidence 999999999999997775554 33444566676 4555553 3889999988752 5677777776655
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhh-cCCC----CCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhh
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIA-AGEY----PNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~----~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~ 251 (1342)
...++++|.++|++||++||+||+|+.|..+ .+.. .+.....|++++|+||+++|+.|||+++++++++.+..
T Consensus 190 tG~~~~~~~i~~l~~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~di~~~s~sK~~~~~~gG~~~~~~~~~~~l~~ 269 (401)
T 1fc4_A 190 DGVIANLKGVCDLADKYDALVMVDDSHAVGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQ 269 (401)
T ss_dssp TTEECCHHHHHHHHHHTTEEEEEECTTTTTTSSTTSCCHHHHTTCTTCCSEEEEESSSTTCSSSCEEEEECHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHcCCEEEEECcccccccCCCCCccHHHcCCCcCCcEEEecchhhccCCCCEEEEcCHHHHHHHHH
Confidence 4458999999999999999999999766542 2211 11122368999999999966678999999999888876
Q ss_pred ccCCcccc-CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHH
Q psy13354 252 AVFPGIQG-GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIA 330 (1342)
Q Consensus 252 ~~~~~~~~-~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~ 330 (1342)
...++.++ +.+...++++..++. ... ..++..+++.++++++.+.|.+.|+++. +..++++|+.+++.....++.
T Consensus 270 ~~~~~~~~~~~~~~~~~a~~~~l~-~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~~~~~~~l~ 345 (401)
T 1fc4_A 270 RSRPYLFSNSLAPAIVAASIKVLE-MVE-AGSELRDRLWANARQFREQMSAAGFTLA--GADHAIIPVMLGDAVVAQKFA 345 (401)
T ss_dssp HCHHHHHSCCCCHHHHHHHHHHHH-HHH-TCHHHHHHHHHHHHHHHHHHHHTTCCBC--CSSSSEEEEEEECHHHHHHHH
T ss_pred hCcCceeCCCCCHHHHHHHHHHHH-HHh-cCHHHHHHHHHHHHHHHHHHHHcCCccc--CCCCCEEEEEcCChHHHHHHH
Confidence 43223222 333444444444443 332 2456788999999999999999887764 356788898886422234556
Q ss_pred HHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
..+++ +||.+.++..|+.+.. .+.+|++++..++.
T Consensus 346 ~~l~~-~gi~v~~~~~~~~~~~---~~~iRi~~~~~~~~ 380 (401)
T 1fc4_A 346 RELQK-EGIYVTGFFYPVVPKG---QARIRTQMSAAHTP 380 (401)
T ss_dssp HHHHH-TTEECCEECTTSSCTT---CEEEEEECCTTCCH
T ss_pred HHHHH-CCcEEeeecCCCCCCC---CceEEEEeCCCCCH
Confidence 66655 5999998876655432 45799999876553
No 38
>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1
Probab=99.88 E-value=3.5e-21 Score=230.19 Aligned_cols=341 Identities=12% Similarity=0.106 Sum_probs=232.2
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
+++++..++..+..+..... ..+.+.+..+.+. .++.+.+++.+.+.. .. ..|+...+..++++++.+++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~------~~y~~~~g~~~l~~~la~~l 80 (386)
T 1u08_A 9 QSKLPQLGTTIFTQMSALAQ-QHQAINLSQGFPDFDGPRYLQERLAHHVAQ-GA------NQYAPMTGVQALREAIAQKT 80 (386)
T ss_dssp CCSCCCCCCCHHHHHHHHHH-HTTCEECCCSSCSSCCCHHHHHHHHHHHHT-TC------CSCCCTTCCHHHHHHHHHHH
T ss_pred chhhhcCCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHh-hc------cCCCCCCCCHHHHHHHHHHH
Confidence 34555555555555544332 2456777777643 446699998888753 11 12333344568889888888
Q ss_pred HHHhCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHH
Q psy13354 83 KKIFNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKK 157 (1342)
Q Consensus 83 a~~~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~ 157 (1342)
.+.+|.+ + .+++++||++|+..++.+++.+||+|++..+.|+++ ...+...|. +++.++.+. ++.+|+++
T Consensus 81 ~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~~---~~~~~~~g~--~~~~v~~~~~~~~~d~~~ 155 (386)
T 1u08_A 81 ERLYGYQPDADSDITVTAGATEALYAAITALVRNGDEVICFDPSYDSY---APAIALSGG--IVKRMALQPPHFRVDWQE 155 (386)
T ss_dssp HHHHSCCCCTTTTEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTC--EEEEEECCTTTCCCCHHH
T ss_pred HHHhCCCCCCCCCEEEcCChHHHHHHHHHHhCCCCCEEEEeCCCchhH---HHHHHHcCC--EEEEeecCcccCcCCHHH
Confidence 8877743 4 667776999999999999999999999888666543 344566676 444555553 57799999
Q ss_pred HHHHHHhcCCeEEEEcCCCCC-cc-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecC
Q psy13354 158 VEYLAKKNKPKLIIAGASAYS-QY-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTT 227 (1342)
Q Consensus 158 Le~~i~~~~~~liv~~~s~~~-~~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~ 227 (1342)
+++.+++ ++++++++++++| +. . ++++|+++|++||++||+||+|+.+.+.+..+.+... ..|++++|+
T Consensus 156 l~~~l~~-~~~~v~l~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~ 234 (386)
T 1u08_A 156 FAALLSE-RTRLVILNTPHNPSATVWQQADFAALWQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSF 234 (386)
T ss_dssp HHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEH
T ss_pred HHHhhcc-cCEEEEEeCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEEccccccccCCCCCcChhcccCccCcEEEEecc
Confidence 9998864 4566666666655 22 2 5799999999999999999999865443222222211 258999999
Q ss_pred CccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 228 HKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 228 sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
||++ |+.| ||+++++++++.+........++ .+.+.+.++..++... ..++++.++++.++++++.+.|.+.|+
T Consensus 235 sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~ 311 (386)
T 1u08_A 235 GKTY-HMTGWKVGYCVAPAPISAEIRKVHQYLTFS-VNTPAQLALADMLRAE-PEHYLALPDFYRQKRDILVNALNESRL 311 (386)
T ss_dssp HHHT-TCGGGCCEEEECCHHHHHHHHHHHHHHTSS-CCHHHHHHHHHHHHHC-THHHHTHHHHHHHHHHHHHHHTTSSSC
T ss_pred hhhc-CCcccceEEEEcCHHHHHHHHHHHHhhccC-CChHHHHHHHHHHhCC-cHHHHHHHHHHHHHHHHHHHHHHHCCC
Confidence 9999 6556 99999998888876543222222 3344555555555433 446778889999999999999998888
Q ss_pred EEeeCCCCCeEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.. +.+++++|+.++.. ..+.++...+++++||.+.++..+.... ...+++|++++.
T Consensus 312 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~--~~~~~iRis~~~ 371 (386)
T 1u08_A 312 EILP-CEGTYFLLVDYSAVSTLDDVEFCQWLTQEHGVAAIPLSVFCADP--FPHKLIRLCFAK 371 (386)
T ss_dssp EECC-CCBSSEEEEECTTTCCSCHHHHHHHHHHHSCEECEEGGGGCSSC--CCSCEEEEECCS
T ss_pred eecC-CCceEEEEEecCCCCCCCHHHHHHHHHHhCCEEEeCchHhCCCC--CCCCEEEEEEcC
Confidence 8754 45578999998754 2345666777777899999865332211 114579999873
No 39
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*
Probab=99.88 E-value=1.9e-21 Score=232.49 Aligned_cols=332 Identities=11% Similarity=0.098 Sum_probs=226.0
Q ss_pred cchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-
Q psy13354 11 IDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN- 87 (1342)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g- 87 (1342)
.+..++....+.- ...+.+.+..+++.+ ++.+.+++.+.+.+ ...+ |+ .+..++++++++++++++|
T Consensus 17 ~g~~~~d~~~~~~-~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~------y~--~~~~~~~~~l~~~l~~~~g~ 86 (391)
T 4dq6_A 17 NFSSKWSEMEKKY-GTNDLLPMWVADMDFKAAPCIIDSLKNRLEQ-EIYG------YT--TRPDSYNESIVNWLYRRHNW 86 (391)
T ss_dssp TTBHHHHCHHHHH-SCSCSEECCSSSCSSCCCHHHHHHHHHHHTT-CCCC------CB--CCCHHHHHHHHHHHHHHHCC
T ss_pred CCceeeeeccccc-CCCCceeccccCCCCCCCHHHHHHHHHHHhC-CCCC------CC--CCCHHHHHHHHHHHHHHhCC
Confidence 3455666543321 124568887776543 46699998887742 1111 11 1235888889999999998
Q ss_pred -CC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec--CCCCCCCCHHHHHHHHH
Q psy13354 88 -AE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG--LNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 88 -~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~--~~~~~~id~e~Le~~i~ 163 (1342)
.+ +.+++++||++|+..++.+++++||+|++..+.+ ......+...|..+..++++ .+.++.+|++++++.++
T Consensus 87 ~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~---~~~~~~~~~~g~~~~~~~~~~~~~~~~~~d~~~l~~~l~ 163 (391)
T 4dq6_A 87 KIKSEWLIYSPGVIPAISLLINELTKANDKIMIQEPVY---SPFNSVVKNNNRELIISPLQKLENGNYIMDYEDIENKIK 163 (391)
T ss_dssp CCCGGGEEEESCHHHHHHHHHHHHSCTTCEEEECSSCC---THHHHHHHHTTCEEEECCCEECTTSCEECCHHHHHHHCT
T ss_pred CCcHHHeEEcCChHHHHHHHHHHhCCCCCEEEEcCCCC---HHHHHHHHHcCCeEEeeeeeecCCCceEeeHHHHHHHhh
Confidence 33 4566666999999999999999999999766444 44455556677744444333 12446789999999987
Q ss_pred hcCCeEEEEcCCCCC--cc---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCC------CcEEEecCCccCC
Q psy13354 164 KNKPKLIIAGASAYS--QY---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF------ADFITSTTHKSLR 232 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~--~~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~------~Divv~S~sK~l~ 232 (1342)
+ +++++++++++| .. .++++|+++|++||++||+||+|+.+.+.+......... ..++++|+||++
T Consensus 164 ~--~~~v~i~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~- 240 (391)
T 4dq6_A 164 D--VKLFILCNPHNPVGRVWTKDELKKLGDICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTF- 240 (391)
T ss_dssp T--EEEEEEESSBTTTTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHH-
T ss_pred c--CCEEEEECCCCCCCcCcCHHHHHHHHHHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhc-
Confidence 6 666666566665 22 469999999999999999999997655433222222111 128899999999
Q ss_pred CCCe---eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEE
Q psy13354 233 GPRG---GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRI 306 (1342)
Q Consensus 233 gp~G---G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~ 306 (1342)
|+.| ||+++++ ++++.+......+..++++.+.+.++..++.. ..++.++..+++.++++++.+.|++. |+.+
T Consensus 241 g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 319 (391)
T 4dq6_A 241 NIAGLQSSYVVLPDEKDYKLLDDAFTRIDIKRNNCFSLVATEASYNN-GESWLESFLEYLESNIDFAIKYINENMPKLKV 319 (391)
T ss_dssp TCGGGCCEEEECCSHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEE
T ss_pred cCcccceEEEEeCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEe
Confidence 5555 9999886 88887776433344445555666666555554 33467788899999999999999883 7877
Q ss_pred eeCCCCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.. +.++++.|+.++.. ....++...+++++||.+.++..++... .+++|++++
T Consensus 320 ~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~iRis~~ 373 (391)
T 4dq6_A 320 RK-PEGTYLLWVDFSALGLSDEELESILVQKGKVALNQGNSFGIGG----SGYQRINLA 373 (391)
T ss_dssp CC-CSBSSEEEEECGGGCCCHHHHHHHHHHTTCEECEEGGGGCTTC----TTEEEEECC
T ss_pred cC-CCccEEEEEEhhhcCCCHHHHHHHHHHhCCEEeeCchhhCCCC----CCeEEEEEc
Confidence 54 45677888998763 3344566666665599999875544332 367999988
No 40
>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*
Probab=99.88 E-value=2.6e-21 Score=231.41 Aligned_cols=314 Identities=17% Similarity=0.134 Sum_probs=215.5
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+.+..+++. .++.+.+++.+.+.... . .|....+..++++++++++...+|.+ +.+++++||++|
T Consensus 31 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~-~------~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~a 103 (385)
T 1b5p_A 31 VDLVALTAGEPDFDTPEHVKEAARRALAQGK-T------KYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQA 103 (385)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTTC-C------SCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHhcCC-C------CCCCCCCCHHHHHHHHHHHHHHhCCCCChHHEEEcCChHHH
Confidence 456788777653 34568888877764311 1 23333445688888888887776743 456666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.++++|||+|+++.+.|+. ....+...|. +++.++.+ +++.+|++++++++++ +++++++++++||
T Consensus 104 l~~~~~~l~~~gd~Vlv~~p~y~~---~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~NPt 177 (385)
T 1b5p_A 104 LFNLFQAILDPGDEVIVLSPYWVS---YPEMVRFAGG--VVVEVETLPEEGFVPDPERVRRAITP-RTKALVVNSPNNPT 177 (385)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTH---HHHHHHHTTC--EEEEEECCGGGTTCCCHHHHHTTCCT-TEEEEEEESSCTTT
T ss_pred HHHHHHHhcCCCCEEEEcCCCchh---HHHHHHHcCC--EEEEeecCcccCCCCCHHHHHHhcCC-CCEEEEEeCCCCCC
Confidence 999999999999999988866543 4445566677 44445555 3568999999998865 3566666566666
Q ss_pred cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 179 QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 179 ~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
+. .++++|+++|++||++||+|++|+.+.+.+ .+.+... ..+++++|+||++ |+.| ||+++++++++.
T Consensus 178 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~i~~~s~SK~~-~~~G~RiG~~~~~~~~~~~ 255 (385)
T 1b5p_A 178 GAVYPKEVLEALARLAVEHDFYLVSDEIYEHLLYEG-EHFSPGRVAPEHTLTVNGAAKAF-AMTGWRIGYACGPKEVIKA 255 (385)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBSSS-CCCCGGGTCTTTEEEEEESTTTT-TCGGGCCEEEECCHHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCCHHHcCCCCEEEEEechhhc-CCcccceEEEEeCHHHHHH
Confidence 22 359999999999999999999998654432 2221111 2468899999999 6556 999999988888
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCC-
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKE--VLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI- 325 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~--~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~- 325 (1342)
+......+..+ ++.+.+.++..++.. ....++++.++++.++++++.+.|.+.|+.+.. +.+++++|+.++..+.
T Consensus 256 l~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~ 333 (385)
T 1b5p_A 256 MASVSRQSTTS-PDTIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTALGLKAVR-PSGAFYVLMDTSPIAPD 333 (385)
T ss_dssp HHHHHHTTTCS-CCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC-CSBTTEEEEECTTTCSS
T ss_pred HHHHHhhccCC-CCHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCeeEEEEEecCCCCCC
Confidence 76643333223 335555555444432 022367778899999999999999888877543 4566788888863232
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
..++...++ ++||.+.++..++. .+++|++++
T Consensus 334 ~~~l~~~l~-~~gv~v~~g~~f~~------~~~iRis~~ 365 (385)
T 1b5p_A 334 EVRAAERLL-EAGVAVVPGTDFAA------FGHVRLSYA 365 (385)
T ss_dssp HHHHHHHHH-HTTEECEESGGGTC------TTEEEEECC
T ss_pred HHHHHHHHH-HCCeEEecccccCC------CCeEEEEec
Confidence 345666666 67999998755432 247999987
No 41
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*
Probab=99.88 E-value=3.2e-21 Score=230.93 Aligned_cols=315 Identities=13% Similarity=0.064 Sum_probs=218.8
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~a 105 (1342)
..+.+.+++...++.+++++.+.+.. .+ ..........+++++++++|.+. .+++++||++|+..+
T Consensus 19 ~~~~~~~g~~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~ 86 (393)
T 2huf_A 19 NKLLMGPGPSNAPQRVLDAMSRPILG----------HL--HPETLKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEAT 86 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTSCCCC----------TT--SHHHHHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHH
T ss_pred CeEEecCCCCCCCHHHHHHHHhhhcc----------CC--CHHHHHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHH
Confidence 34666777777888888887655421 11 12234566667789999999874 577777999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.+++.+||+|+++...|++.. ........|. +++.++.++++.+|++++++.+++.++++|++++++++ ...++
T Consensus 87 ~~~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 163 (393)
T 2huf_A 87 LCNLLEDGDVILIGHTGHWGDR-SADMATRYGA--DVRVVKSKVGQSLSLDEIRDALLIHKPSVLFLTQGDSSTGVLQGL 163 (393)
T ss_dssp HHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHHHhCCCCEEEEECCCcchHH-HHHHHHHcCC--eeEEEeCCCCCCCCHHHHHHHHhccCCcEEEEEccCCCccccCCH
Confidence 9999999999998876654421 2223345676 44555666677899999999998634566666565554 44589
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc---cCCc--
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA---VFPG-- 256 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~---~~~~-- 256 (1342)
++|+++|++||++||+|++|+.|.... .... ..|++++|+||+++|+.| |++++++++++.+... ..++
T Consensus 164 ~~i~~~~~~~~~~li~D~a~~~~~~~~----~~~~~~~d~~~~s~sK~l~g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~ 239 (393)
T 2huf_A 164 EGVGALCHQHNCLLIVDTVASLGGAPM----FMDRWEIDAMYTGSQKVLGAPPGITPVSFSHRAVERYKRRNTKVKVYYW 239 (393)
T ss_dssp TTHHHHHHHTTCEEEEECTTTBTTBCC----CTTTTTCSEEECCSSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCGGG
T ss_pred HHHHHHHHHcCCEEEEEcccccCCCCc----chhhcCccEEEECCCcccccCCCeEEEEECHHHHHHHhhcCCCCceEEE
Confidence 999999999999999999987654311 1111 369999999999878888 9999999988887653 1121
Q ss_pred -----------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC--CCCeEEE
Q psy13354 257 -----------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG--TKSHIIL 317 (1342)
Q Consensus 257 -----------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~--~~~~~v~ 317 (1342)
..++++.....++..++......++++..+++.++++++.+.|.+.|+++..+. ...++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~ 319 (393)
T 2huf_A 240 DMSLVGDYWGCFGRPRIYHHTISSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDAGFELYADPKDRLSTVTT 319 (393)
T ss_dssp CHHHHHHHTTCSSSCCCCSCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCTTEEE
T ss_pred chHHHHhhhccccccCCCCCCCCHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCCeeccCccccCCcEEE
Confidence 123455555555555555443335778889999999999999998887764421 1234778
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
+.++......++...+++++||.+.++..+. ..+++|++++..+
T Consensus 320 ~~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~------~~~~~Ri~~~~~~ 363 (393)
T 2huf_A 320 IKVPQGVDWLKAAQYAMKTYLVEISGGLGPT------AGQVFRIGLMGQN 363 (393)
T ss_dssp EECCTTCCHHHHHHHHHHHHCEECBCCCGGG------TTTEEEEECCGGG
T ss_pred EEcCCCCCHHHHHHHHHHhCCEEEecCcccc------cCCEEEEEcccCc
Confidence 8876433345666677666799998654321 1357999995543
No 42
>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*
Probab=99.88 E-value=1.4e-21 Score=233.92 Aligned_cols=337 Identities=13% Similarity=0.095 Sum_probs=226.1
Q ss_pred ccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 8 LSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
++..++.....+.....+..+.+.+..+.+. .++.+.+++.+.+... .. .|+...+..++++++++++.+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~------~y~~~~g~~~l~~~la~~~~~~ 79 (389)
T 1gd9_A 7 LELVSASEIRKLFDIAAGMKDVISLGIGEPDFDTPQHIKEYAKEALDKG-LT------HYGPNIGLLELREAIAEKLKKQ 79 (389)
T ss_dssp HHHSCCCHHHHHHHHHHTCSSCEECCCCSCSSCCCHHHHHHHHHHHHTT-CC------SCCCTTCCHHHHHHHHHHHHHH
T ss_pred hHhCChhHHHHHHHHHhhhcCeEecCCCCCCCCCCHHHHHHHHHHHhCC-CC------CCCCCCCcHHHHHHHHHHHHHH
Confidence 3333333333333333333456788777654 3556889888877531 11 1333344568888888888777
Q ss_pred hCC--C-Cc-eEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHH
Q psy13354 86 FNA--E-AA-NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVE 159 (1342)
Q Consensus 86 ~g~--~-~~-vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le 159 (1342)
+|. + +. +++++||++|+..++.+++.+||+|++....|+++ ...+...|.. ++.++.++ ++.+|+++++
T Consensus 80 ~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~vl~~~~~~~~~---~~~~~~~g~~--~~~v~~~~~~~~~~d~~~l~ 154 (389)
T 1gd9_A 80 NGIEADPKTEIMVLLGANQAFLMGLSAFLKDGEEVLIPTPAFVSY---APAVILAGGK--PVEVPTYEEDEFRLNVDELK 154 (389)
T ss_dssp HCCCCCTTTSEEEESSTTHHHHHHHTTTCCTTCEEEEEESCCTTH---HHHHHHHTCE--EEEEECCGGGTTCCCHHHHH
T ss_pred hCCCCCCCCeEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhH---HHHHHHCCCE--EEEeccCCccCCCCCHHHHH
Confidence 784 2 34 66666999999999999999999999888666554 3444556764 44445543 4678999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCc
Q psy13354 160 YLAKKNKPKLIIAGASAYS-QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHK 229 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK 229 (1342)
+.+++ ++++++++++++| +.. ++++|+++|++||++||+|++|+.+.+.+....+.. ...|++++|+||
T Consensus 155 ~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK 233 (389)
T 1gd9_A 155 KYVTD-KTRALIINSPCNPTGAVLTKKDLEEIADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSK 233 (389)
T ss_dssp HHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTT
T ss_pred HhcCc-CceEEEEECCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEehhhhhcccCCCCCCCHhhccCCCCCEEEEecChh
Confidence 98875 4566666666665 222 599999999999999999999987655322122211 125799999999
Q ss_pred cCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHhCCc
Q psy13354 230 SLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP--DFKIYQKQVVKNAKILSKILDQRGI 304 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~--~~~~~~~~l~~~a~~l~~~L~~~g~ 304 (1342)
++ |+.| ||+++++++++.+......+.++ ++.+.+.++..++. .... ++++.++++.++++++.+.|.+.|+
T Consensus 234 ~~-~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~ 310 (389)
T 1gd9_A 234 TF-AMTGWRLGFVAAPSWIIERMVKFQMYNATC-PVTFIQYAAAKALK-DERSWKAVEEMRKEYDRRRKLVWKRLNEMGL 310 (389)
T ss_dssp TT-TCGGGCCEEEECCHHHHHHHHHHHTTTTCS-CCHHHHHHHHHHHT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hc-CCcccceEEEEECHHHHHHHHHHHhhhccC-CCHHHHHHHHHHHh-CCCcchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99 6566 99999999988887644433333 33445555444433 2222 5677888999999999999998887
Q ss_pred EEeeCCCCCeEEEEEccC-CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRN-KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~-~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.. +.+++++|+.++. .....++...+++++||.+.++..++.. ..+++|++++.
T Consensus 311 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~----~~~~iRi~~~~ 367 (389)
T 1gd9_A 311 PTVK-PKGAFYIFPRIRDTGLTSKKFSELMLKEARVAVVPGSAFGKA----GEGYVRISYAT 367 (389)
T ss_dssp CCCC-CCBTTEECCBCGGGTCCHHHHHHHHHHHTCEECEEGGGGCGG----GTTBEEEECCS
T ss_pred eecC-CCeeeEEEEeccCCCCCHHHHHHHHHHhCCEEEeCchhhCCC----CCCeEEEEecC
Confidence 7643 4456788888864 2234466667765779999987654421 13579999875
No 43
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Probab=99.88 E-value=7.7e-21 Score=229.31 Aligned_cols=318 Identities=15% Similarity=0.105 Sum_probs=222.4
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCc--eEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAA--NVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~--vi~~~sGs~A~~~a 105 (1342)
..+.+.+++..+++.+.+++.+... + .......++.+++++++++++|.+.. +++++||++|+..+
T Consensus 11 ~~~~~~p~p~~~~~~v~~a~~~~~~-----~-------~~~~~~~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~ 78 (416)
T 3isl_A 11 LRTIMTPGPVEVDPRVLRVMSTPVV-----G-------QFDPAFTGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAV 78 (416)
T ss_dssp CCEECSSSSCCCCHHHHHHTTSCCC-----C-------TTSHHHHHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHH
T ss_pred cceeecCCCcCcCHHHHHHhcccCC-----C-------CccHHHHHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHH
Confidence 3455667777788877777544210 0 11123356667788899999998743 33676999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.+++.|||+|+++...+.+.. ....+...|. +++.++.+.++.+|++++++++++.++++|++++++++ ...++
T Consensus 79 ~~~l~~~gd~Vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 155 (416)
T 3isl_A 79 LASVIEPEDDVLIPIYGRFGYL-LTEIAERYGA--NVHMLECEWGTVFDPEDIIREIKKVKPKIVAMVHGETSTGRIHPL 155 (416)
T ss_dssp HHHHCCTTCEEEEEESSHHHHH-HHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHHhcCCCCEEEEecCCcccHH-HHHHHHhcCC--eeEEEecCCCCCCCHHHHHHHHhhCCCcEEEEEccCCCCceecCH
Confidence 9999999999998775443311 3344566677 45555666778899999999998545677776665555 44589
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc---------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV--------- 253 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~--------- 253 (1342)
++|.++|++||++||+|++|+.|...... ....+|++++|+||++.|+.| |++++++++++.+....
T Consensus 156 ~~i~~l~~~~~~~li~D~a~~~~~~~~~~---~~~~~d~~~~s~~K~l~g~~g~g~~~~~~~~~~~~~~~~~~~~Gw~~~ 232 (416)
T 3isl_A 156 KAIGEACRTEDALFIVDAVATIGGCEVKV---DEWKIDAAIGGTQKCLSVPSGMAPITYNERVADVIAARKKVERGIATQ 232 (416)
T ss_dssp HHHHHHHHHTTCEEEEECTTTTTTSCCCT---TTTTCSEEECCSSSTTCCCSSEEEEEECHHHHHHHHTC----------
T ss_pred HHHHHHHHHcCCEEEEECCccccCCCcch---hhcCCCEEEecCccccCCCCCeEEEEECHHHHHHhhcccccccccccc
Confidence 99999999999999999999876542111 011369999999999768888 99999999888776421
Q ss_pred ----------------------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcE
Q psy13354 254 ----------------------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305 (1342)
Q Consensus 254 ----------------------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~ 305 (1342)
..+..++++.....++..++......++++..+++.++++++.+.|.+.|++
T Consensus 233 ~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~ 312 (416)
T 3isl_A 233 ADRAALSGNRPITSNYFDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMGLR 312 (416)
T ss_dssp --------CCCCSCSTTCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccchhccCCCCCCccccchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCE
Confidence 1222345556666666556554444347888999999999999999998887
Q ss_pred EeeCCC--CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 306 IVSGGT--KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 306 ~~~~~~--~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+..+.. ..+++++.++......++...+++++||.+.++..+. ..+++|++++...+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gi~v~~g~~~~------~~~~iRi~~~~~~~~ 372 (416)
T 3isl_A 313 LFGDDSCKMPVVTCVEIPGGIDGESVRDMLLAQFGIEIASSFGPL------AGKIWRIGTMGYSCR 372 (416)
T ss_dssp BCSCGGGBCTTEEEEECCTTCCHHHHHHHHHHHHCEECBCCCSTT------TTTEEEEECCGGGCS
T ss_pred eccCccccCCcEEEEeCCCCCCHHHHHHHHHHhCCEEEecCCCCC------CCCEEEEecccCCCc
Confidence 654221 1467888886544455677777776699998764222 245799999776553
No 44
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0
Probab=99.88 E-value=1.4e-21 Score=233.67 Aligned_cols=317 Identities=12% Similarity=0.119 Sum_probs=220.2
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sGs~A 101 (1342)
++.|.+..+++. .++.+.+++.+.+.+ ...+|+ .. ..++++++++++++.+| .+ +.+++++||++|
T Consensus 27 ~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~------~~--~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a 97 (391)
T 3dzz_A 27 EKELPMWIAEMDFKIAPEIMASMEEKLKV-AAFGYE------SV--PAEYYKAVADWEEIEHRARPKEDWCVFASGVVPA 97 (391)
T ss_dssp TTCEECCSSCCSSCCCHHHHHHHHHHHTT-CCCCCB------CC--CHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHH
T ss_pred CCceeccccCCCCCCCHHHHHHHHHHHhc-CcCCCC------CC--CHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHH
Confidence 356888777644 345699998887743 111221 11 35888889999999988 33 566666699999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC---CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL---NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~---~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
+..++.+++.+||+|++....| .+....+...|. +++.++. +.++.+|++++++++++.++++++++++++|
T Consensus 98 ~~~~~~~l~~~gd~vl~~~~~~---~~~~~~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~v~i~~p~np 172 (391)
T 3dzz_A 98 ISAMVRQFTSPGDQILVQEPVY---NMFYSVIEGNGR--RVISSDLIYENSKYSVNWADLEEKLATPSVRMMVFCNPHNP 172 (391)
T ss_dssp HHHHHHHHSCTTCEEEECSSCC---HHHHHHHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTSTTEEEEEEESSBTT
T ss_pred HHHHHHHhCCCCCeEEECCCCc---HHHHHHHHHcCC--EEEEeeeeecCCceeecHHHHHHHHhccCceEEEEECCCCC
Confidence 9999999999999999766444 444555566777 4555555 3345689999999998556777766666665
Q ss_pred --cc---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCc--EEEecCCccCCCCCe---eEEEEe-c
Q psy13354 179 --QY---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FAD--FITSTTHKSLRGPRG---GFILMK-K 243 (1342)
Q Consensus 179 --~~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~D--ivv~S~sK~l~gp~G---G~iv~~-~ 243 (1342)
.. .++++|+++|++||++||+|++|+.+.+.+..+.+... ..| ++++|+||++ |+.| |+++++ +
T Consensus 173 tG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~-g~~G~r~G~~~~~~~ 251 (391)
T 3dzz_A 173 IGYAWSEEEVKRIAELCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTF-NLAALHAACAIIPNP 251 (391)
T ss_dssp TTBCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHH-TCTTTCCEEEECCSH
T ss_pred CCcccCHHHHHHHHHHHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhc-cccchhheEEEECCH
Confidence 22 47999999999999999999999865543322222211 145 8899999998 5444 999997 7
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEcc
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~ 321 (1342)
++++.+..........+++.+.+.++..++.. ...+.++..+++.++++++.+.|.+. |+.+.. +.+++++|+.++
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 329 (391)
T 3dzz_A 252 DLRARAEESFFLAGIGEPNLLAIPAAIAAYEE-GHDWLRELKQVLRDNFAYAREFLAKEVPEVKVLD-SNASYLAWVDIS 329 (391)
T ss_dssp HHHHHHHHHHHHHTCSSCCTTHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSEECC-CCBSSEEEEECG
T ss_pred HHHHHHHHHHHhhccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhhCCCcEEec-cCceEEEEEehh
Confidence 88887765432222223334455555555544 33467888899999999999999984 787754 456778889887
Q ss_pred CCC-CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 322 NKK-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 322 ~~~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
..+ ...++...+++++||.+.++..++... .+++|++++
T Consensus 330 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~iRis~~ 369 (391)
T 3dzz_A 330 ALGMNAEDFCKYLREKTGLIISAGNGYRGNG----HEFVRINLA 369 (391)
T ss_dssp GGCSCHHHHHHHHHHHHCEECEESGGGCTTG----GGEEEEECC
T ss_pred hcCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEec
Confidence 643 344666666666799999875544332 467999988
No 45
>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*
Probab=99.88 E-value=6.2e-21 Score=224.34 Aligned_cols=311 Identities=14% Similarity=0.123 Sum_probs=215.2
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al 106 (1342)
+.+.+++...++.+++++.+.+.. ++ .....+....+++++++++|.+ +.+++++||++|+..++
T Consensus 2 ~~~~~gp~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~ 69 (353)
T 2yrr_A 2 LLLTPGPTPIPERVQKALLRPMRG----------HL--DPEVLRVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGL 69 (353)
T ss_dssp EECSSSSCCCCHHHHGGGGSCCCC----------TT--CHHHHHHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHH
T ss_pred ccCCCCCCCCCHHHHHHHhccccc----------cc--CHHHHHHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHH
Confidence 456788888888888887655421 01 1222345666778999999984 55677779999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
.++++ |+|+++...++++ .........|.. ++.++.++++.+|++++++.+++.++++++++++++| ...+++
T Consensus 70 ~~~~~--d~vl~~~~~~~~~-~~~~~~~~~g~~--~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~ 144 (353)
T 2yrr_A 70 ANLDR--GPVLVLVNGAFSQ-RVAEMAALHGLD--PEVLDFPPGEPVDPEAVARALKRRRYRMVALVHGETSTGVLNPAE 144 (353)
T ss_dssp HTCSC--CCEEEEECSHHHH-HHHHHHHHTTCC--EEEEECCTTSCCCHHHHHHHHHHSCCSEEEEESEETTTTEECCHH
T ss_pred HHhcC--CcEEEEcCCCchH-HHHHHHHHcCCc--eEEEeCCCCCCCCHHHHHHHHHhCCCCEEEEEccCCCcceecCHH
Confidence 99876 8898877555544 233344566774 4445666678899999999998745666666666555 445899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhh-c--------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINS-A-------- 252 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~-~-------- 252 (1342)
+|.++|++||++||+|++|+.|... . .+. .+|++++|+||+++|+.| |++++++++++.+.. .
T Consensus 145 ~i~~l~~~~~~~li~D~a~~~~~~~----~-~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~l~~~~~~~~~~~~ 219 (353)
T 2yrr_A 145 AIGALAKEAGALFFLDAVTTLGMLP----F-SMRAMGVDYAFTGSQKCLSAPPGLAPIAASLEARKAFTGKRGWYLDLAR 219 (353)
T ss_dssp HHHHHHHHHTCEEEEECTTTTTTSC----C-CHHHHTCSEEECCTTSTTCCCSSCEEEEECHHHHHHCCCCSCSTTCHHH
T ss_pred HHHHHHHHcCCeEEEEcCccccccc----c-cccccCceEEEecCcccccCCCceEEEEECHHHHHHhccCCCccccHHH
Confidence 9999999999999999999755331 1 111 258999999999878788 999999988876641 0
Q ss_pred ----c-CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-CCeEEEEEccCCCCC
Q psy13354 253 ----V-FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT-KSHIILVDLRNKKIT 326 (1342)
Q Consensus 253 ----~-~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~~~~v~i~~~~~~~~ 326 (1342)
. .....++++.+.+.++..++......++++..+++.++++++.+.|++.|+++..++. .++++++.++.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 299 (353)
T 2yrr_A 220 VAEHWERGGYHHTTPVLLHYALLEALDLVLEEGVAARERRAREVYAWVLEELKARGFRPYPKASPLPTVLVVRPPEGVDA 299 (353)
T ss_dssp HHHHHTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCEESCSSSBCTTEEEEECCTTCCH
T ss_pred HhhhhhcCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCccccCccCCCeEEEEECCCCCCH
Confidence 0 1222334455555555555544433347788899999999999999988888755221 456778887643334
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++...+.+ +||.+.++..+.. .+++|++++..++.
T Consensus 300 ~~~~~~l~~-~gi~v~~g~~~~~------~~~iRi~~~~~~~~ 335 (353)
T 2yrr_A 300 DRLVRALYA-EGVAVAGGIGPTR------GQVLRLGLMGEGAR 335 (353)
T ss_dssp HHHHHHHHH-TTEECEECCGGGT------TTCEEEECSGGGSC
T ss_pred HHHHHHHHH-CCEEEeCCccccC------CCeEEEecCccCCH
Confidence 455555555 5999987653321 35699999766554
No 46
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3
Probab=99.88 E-value=8.6e-21 Score=227.24 Aligned_cols=313 Identities=13% Similarity=0.085 Sum_probs=219.4
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-C-ceEecCCHHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-A-ANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~-~vi~~~sGs~A~~~al~ 107 (1342)
+.+.++....++.+.+++.+.+.+ .|+ ....++.+++++++++++|.+ + .+++++||++|+..++.
T Consensus 36 ~l~~~~~~~~~~~v~~a~~~~~~~----------~~~--~~~~~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~ 103 (393)
T 1vjo_A 36 LLLGPGPSNAHPSVLQAMNVSPVG----------HLD--PAFLALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIA 103 (393)
T ss_dssp EECSSSCCCCCHHHHHHHSSCCCC----------TTS--HHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHH
T ss_pred eeccCCCCCCCHHHHHHHhccccc----------ccC--HHHHHHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHH
Confidence 445566677888888887665421 121 224567778888999999987 4 57777799999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
+++.+||+|++....+++. .....+...|. +++.++.+.++.+|++++++.+++.+++++++++++++ ...++++
T Consensus 104 ~~~~~gd~Vl~~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~l~~ 180 (393)
T 1vjo_A 104 NAVEPGDVVLIGVAGYFGN-RLVDMAGRYGA--DVRTISKPWGEVFSLEELRTALETHRPAILALVHAETSTGARQPLEG 180 (393)
T ss_dssp HHCCTTCEEEEEESSHHHH-HHHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred hccCCCCEEEEEcCChhHH-HHHHHHHHcCC--ceEEEecCCCCCCCHHHHHHHHhhCCceEEEEeccCCCcceeccHHH
Confidence 9999999999877555431 14445566677 45555666678899999999998634556666665555 4458999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc---cCC-----
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA---VFP----- 255 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~---~~~----- 255 (1342)
|+++|+++|++||+|++|+.|... .... ..+|++++|+||+++++.| |++++++++++.+... ..+
T Consensus 181 i~~l~~~~~~~li~Dea~~~g~~~----~~~~~~~~di~~~s~sK~l~~~~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~ 256 (393)
T 1vjo_A 181 VGELCREFGTLLLVDTVTSLGGVP----IFLDAWGVDLAYSCSQKGLGCSPGASPFTMSSRAIEKLQRRRTKVANWYLDM 256 (393)
T ss_dssp HHHHHHHHTCEEEEECTTTTTTSC----CCTTTTTCSEEECCSSSTTCSCSSCEEEEECHHHHHHHHTCSSCCSCSTTCH
T ss_pred HHHHHHHcCCEEEEECCccccCcC----CcccccCccEEEEcCcccccCCCceEEEEECHHHHHHHhccCCCCCceecCc
Confidence 999999999999999999865331 1111 1369999999999977667 9999999988887532 111
Q ss_pred -----------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEccC
Q psy13354 256 -----------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLRN 322 (1342)
Q Consensus 256 -----------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~~ 322 (1342)
+..++++.+.+.++..++......++++.++++.++++++.+.|.+.|+++..+.. ..+++++.++.
T Consensus 257 ~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~ 336 (393)
T 1vjo_A 257 NLLGKYWGSERVYHHTAPINLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSLHVEKEYRLPTLTTVCIPD 336 (393)
T ss_dssp HHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEEEECCT
T ss_pred HhhhhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcCCcccCCccccCCcEEEEEcCC
Confidence 11225556666666666655434457788999999999999999988877644211 23577887754
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
.....++...+++++||.+.++..+.. .+.+|+++...+
T Consensus 337 ~~~~~~~~~~l~~~~gi~v~~g~~~~~------~~~iRis~~~~~ 375 (393)
T 1vjo_A 337 GVDGKAVARRLLNEHNIEVGGGLGELA------GKVWRVGLMGFN 375 (393)
T ss_dssp TCCHHHHHHHHHHHHCEECEECCGGGT------TTEEEEECCGGG
T ss_pred CCCHHHHHHHHHhhCCEEEecCccccC------CCEEEEeCCccC
Confidence 333456666666655999998653322 356999965443
No 47
>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*
Probab=99.88 E-value=9.6e-21 Score=225.64 Aligned_cols=312 Identities=18% Similarity=0.140 Sum_probs=216.8
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC---ceEecCCHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA---ANVQPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~---~vi~~~sGs~A~~~al 106 (1342)
+.+.+++..+++.+++++.+.+.. + ......++.+.+++++++++|.+. .+++++||++|+. ++
T Consensus 4 ~~~~~gp~~~~~~v~~a~~~~~~~-----~-------~~~~~~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~ 70 (384)
T 3zrp_A 4 LLLHVGPTTIKEDVLVAGLENNVG-----F-------TSKEFVEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SV 70 (384)
T ss_dssp --CCSSCSCCCHHHHHHTTCCSCC-----T-------TSHHHHHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HG
T ss_pred eeccCCCCCCCHHHHHHhhccccc-----c-------ccHHHHHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HH
Confidence 446778888888898887655421 0 112234566678889999999874 3566669999999 99
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHH
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~ 184 (1342)
.+++++||+|+++...+.+. .........|. +++.++.+.++.+|++++++.+++.+++++++++++++ ...+++
T Consensus 71 ~~~~~~gd~vi~~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l~ 147 (384)
T 3zrp_A 71 TSLLKPNDKILVVSNGVFGD-RWEQIFKRYPV--NVKVLRPSPGDYVKPGEVEEEVRKSEYKLVALTHVETSTGVREPVK 147 (384)
T ss_dssp GGGCCTTCEEEEECSSHHHH-HHHHHHTTSSC--EEEEECCSTTCCCCHHHHHHHHHHSCEEEEEEESEETTTTEECCHH
T ss_pred HhhcCCCCEEEEecCCcchH-HHHHHHHHcCC--cEEEecCCCCCCCCHHHHHHHHHhCCCcEEEEeCCCCCCceECcHH
Confidence 99999999999876543221 12233355566 55666777778899999999998866777777666555 455899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHH-hh-----------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKII-NS----------- 251 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l-~~----------- 251 (1342)
+|.++|++||++||+|++|+.+...... ....+|++++|+||+++|+.| |++++++++++.+ ..
T Consensus 148 ~i~~l~~~~~~~li~D~a~~~~~~~~~~---~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (384)
T 3zrp_A 148 DVINKIRKYVELIVVDGVSSVGAEEVKA---EEWNVDVYLTASQKALGSAAGLGLLLLSPKALSILDSQNSIAGYYLDLR 224 (384)
T ss_dssp HHHHHHGGGEEEEEEECTTTTTTSCCCT---TTTTCSEEEEETTSTTCCCSSEEEEEECHHHHHHHHHCCCSCCSTTCHH
T ss_pred HHHHHHHhcCCEEEEECcccccCccccc---cccCCCEEEecCcccccCCCceEEEEECHHHHHHhcCCCCCCcccccHH
Confidence 9999999999999999999876542111 001369999999999977777 9999999887776 11
Q ss_pred -cc---------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC---CCCeEEEE
Q psy13354 252 -AV---------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG---TKSHIILV 318 (1342)
Q Consensus 252 -~~---------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~---~~~~~v~i 318 (1342)
.. ....+++++.....++..++......+++++.+++.++++++.+.|.+.|+++..+. ...+++++
T Consensus 225 ~~~~~~~~~~~~~~~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 304 (384)
T 3zrp_A 225 NWLPVMRGAEEGKAAYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALGLEIVARRPESYSNTVTGV 304 (384)
T ss_dssp HHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSCSSGGGBCSSEEEE
T ss_pred HHHHHHHhhcccCCCcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCeEccCcccccCccEEEE
Confidence 00 111123555556666555555444445788899999999999999999887765422 13567788
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.++. ....++...+.+ +||.+.++..+.. +++|+++...++.
T Consensus 305 ~~~~-~~~~~~~~~l~~-~gi~v~~g~~~~~-------~~iRi~~~~~~~~ 346 (384)
T 3zrp_A 305 ILKV-ADPQKVLAGTVN-EGVEFAPGVHPAF-------KYFRIGHMGWVTP 346 (384)
T ss_dssp ECSS-SCHHHHHHHHHT-TTCCCEECCCTTC-------CEEEEECCSSCCH
T ss_pred ECCC-CCHHHHHHHHHH-CCEEEecCCCCCc-------CEEEEeccccCCH
Confidence 8876 334455555555 5999987642111 4699998876553
No 48
>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}
Probab=99.87 E-value=3.7e-21 Score=232.99 Aligned_cols=320 Identities=14% Similarity=0.111 Sum_probs=225.1
Q ss_pred ccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHH
Q psy13354 26 QNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQ 100 (1342)
Q Consensus 26 ~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~ 100 (1342)
.++.|.+..+.+. .+|.+.+++.+.+.. ...+|+ . ...++++++++++++.+|. + +.+++++||++
T Consensus 60 g~~~i~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~------~--~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~e 130 (421)
T 3l8a_A 60 NPELLQMWVADMDFLPVPEIKEAIINYGRE-HIFGYN------Y--FNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVP 130 (421)
T ss_dssp CTTCEECCSSCCCSCCCHHHHHHHHHHHHH-CCSSCB------C--CCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCeeecccCCCCCCCCHHHHHHHHHHHhc-CCcCCC------C--CCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHH
Confidence 3466888777643 346699998888753 111221 1 1257888899999999883 3 55677769999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEec-CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG-LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~-~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
|+..++.+++.+||+|++....+++ ....+...|..+..+++. .+.++.+|++++++++++.+++++++++++++
T Consensus 131 a~~~a~~~~~~~gd~Vi~~~~~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~vil~~p~npt 207 (421)
T 3l8a_A 131 AISIALQAFSEKGDAVLINSPVYYP---FARTIRLNDHRLVENSLQIINGRFEIDFEQLEKDIIDNNVKIYLLCSPHNPG 207 (421)
T ss_dssp HHHHHHHHHSCTEEEEEEEESCCHH---HHHHHHHTTEEEEEEECEEETTEEECCHHHHHHHHHHTTEEEEEEESSBTTT
T ss_pred HHHHHHHHhcCCCCEEEECCCCcHH---HHHHHHHCCCEEEeccccccCCCeeeCHHHHHHHhhccCCeEEEECCCCCCC
Confidence 9999999999999999987755544 444555667755555443 23456789999999998556677777766666
Q ss_pred c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEEe-ch
Q psy13354 179 Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILMK-KK 244 (1342)
Q Consensus 179 ~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~~-~~ 244 (1342)
+ . .++++|+++|++||++||+||+|+.+...+..+..... ..++++.|+||++ |+.| |+++++ ++
T Consensus 208 G~~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~~~G~~~~~~~~ 286 (421)
T 3l8a_A 208 GRVWDNDDLIKIAELCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTF-NIAGTKNSFAIIQNES 286 (421)
T ss_dssp TBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHH-TCGGGCCEEEECCSHH
T ss_pred CCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhc-cCchhheEeEEcCCHH
Confidence 2 2 37999999999999999999999765443322221111 1348899999999 5445 999988 78
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK 323 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~ 323 (1342)
+++.+......+.+++++...++++.+++.. ..+++++..+++.++++++.+.|++. ++.+.. +.++++.|++++..
T Consensus 287 l~~~~~~~~~~~~~~~~n~~~~~a~~aal~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~i~~~~-~~~~~~~~v~~~~~ 364 (421)
T 3l8a_A 287 LRRKFQYRQLANNQHEVPTVGMIATQAAFQY-GKPWLEELKTVIEGNIKLVIKELEAKTKIKVME-PEGTYLVWLDFSAY 364 (421)
T ss_dssp HHHHHHHHHHHTTCSCCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSCEEEC-CSBSSEEEEECGGG
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHHHHHHHHHhCCCceEeC-CCeeEEEEEecccc
Confidence 8887766443334444555666666555554 34467888899999999999999884 787754 56678888998763
Q ss_pred -CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 324 -KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 324 -~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
....++...+++++||.+.++..++.. ..+.+|++++
T Consensus 365 ~~~~~~l~~~l~~~~gi~v~~g~~f~~~----~~~~iRi~~~ 402 (421)
T 3l8a_A 365 AIAQPQLSEKLQNEAKVVLNDGAHFGKE----GKYFARLNVA 402 (421)
T ss_dssp TCCTTHHHHHHHHTTCEECEEGGGGCGG----GTTEEEEECC
T ss_pred CCCHHHHHHHHHHhCCEEEECchhhCCC----CCCEEEEEec
Confidence 234577777777789999987554422 1467999987
No 49
>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}
Probab=99.87 E-value=3.9e-21 Score=231.25 Aligned_cols=319 Identities=9% Similarity=0.004 Sum_probs=217.3
Q ss_pred ceeeeecC-C--CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHHH
Q psy13354 29 NIELIASE-N--YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQA 101 (1342)
Q Consensus 29 ~i~l~a~~-n--~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~A 101 (1342)
.|.+..++ + ..++.+++++.+.+......+ |+...+..++.+++++++++++|.+ +.+++++||++|
T Consensus 41 ~id~~~g~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a 114 (407)
T 3nra_A 41 PVDFSHGDVDAHEPTPGAFDLFSAGVQSGGVQA------YTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGA 114 (407)
T ss_dssp CEETTSCCTTTSCCCTTHHHHHHHHHHHTHHHH------SCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHH
T ss_pred eeeecCcCCCCCCCcHHHHHHHHHHHhcCCCCC------cCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHH
Confidence 46665533 3 234459999888875322112 2223344578888888999999973 456666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC----CCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL----NKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~----~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+..++.+++.+||+|++..+.|. +....+...|..+..+++.. ++++.+|++++++.+++ ++++++++++++
T Consensus 115 ~~~~~~~l~~~gd~vl~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~n 190 (407)
T 3nra_A 115 LFLAVAATVARGDKVAIVQPDYF---ANRKLVEFFEGEMVPVQLDYVSADETRAGLDLTGLEEAFKA-GARVFLFSNPNN 190 (407)
T ss_dssp HHHHHHTTCCTTCEEEEEESCCT---HHHHHHHHTTCEEEEEEBCCCSSCCSSCCBCHHHHHHHHHT-TCCEEEEESSCT
T ss_pred HHHHHHHhCCCCCEEEEcCCccc---chHHHHHHcCCEEEEeecccccccCcCCCcCHHHHHHHHhh-CCcEEEEcCCCC
Confidence 99999999999999998775544 44555667777544444321 36788999999999987 445554445555
Q ss_pred C--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C----CCCcEEEecCCccCCCCCe---eEEEEec
Q psy13354 178 S--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V----PFADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 178 ~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l----~~~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
| ...+ +++|+++|++||++||+|++|+.+.+.+..+... + ...+++++|+||++ |+.| ||+++++
T Consensus 191 ptG~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~ 269 (407)
T 3nra_A 191 PAGVVYSAEEIGQIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTE-SLSGYRLGVAFGSR 269 (407)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTT-CCGGGCCEEEEECH
T ss_pred CCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCccccc-CCCeeeEEEEEcCH
Confidence 5 3335 9999999999999999999998765543222211 1 12358899999999 6555 9999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~ 322 (1342)
++++.+......+.+++ +...+.++..++ +....++++..+++.++++++.+.|.+. ++.+.. +.+++++|+.++.
T Consensus 270 ~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~~~~~ 346 (407)
T 3nra_A 270 AIIARMEKLQAIVSLRA-AGYSQAVLRGWF-DEAPGWMEDRIARHQAIRDELLHVLRGCEGVFART-PQAGSYLFPRLPK 346 (407)
T ss_dssp HHHHHHHHHHHHHTSSS-CHHHHGGGGGTT-CCCTTHHHHHHHHHHHHHHHHHHHHHTSTTCBCCC-CSBSSEECCBCCC
T ss_pred HHHHHHHHHHhhhccCC-ChHHHHHHHHHH-hccchHHHHHHHHHHHHHHHHHHHHhcCCCceecc-CCeeEEEEEeCCC
Confidence 99888876544444433 233333333222 2222467788889999999999999987 776643 4556888988876
Q ss_pred CC-CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 323 KK-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 323 ~~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.. ...++...+++++||.+.++..+.... .+++|++++.
T Consensus 347 ~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~iRis~~~ 386 (407)
T 3nra_A 347 LAVAPAEFVKILRLQAGVVVTPGTEFSPHT----ADSVRLNFSQ 386 (407)
T ss_dssp BSSCHHHHHHHHHHHHCEECEEGGGTCTTC----TTBEEEECCS
T ss_pred CCCCHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEeCC
Confidence 33 344666666676799999876554322 4679999874
No 50
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Probab=99.87 E-value=4.2e-21 Score=229.76 Aligned_cols=311 Identities=13% Similarity=0.110 Sum_probs=211.8
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN 111 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~ 111 (1342)
.++....++.+++++.+.+.+ .+ ..........+++++++++|.+ +.+++++||++|+..++.++++
T Consensus 14 ~~~~~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~~~ 81 (392)
T 2z9v_A 14 TAGPVNAYPEVLRGLGRTVLY----------DY--DPAFQLLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASLIS 81 (392)
T ss_dssp SSSCCCCCHHHHHHTTSCCCC----------TT--SHHHHHHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHHCC
T ss_pred cCCCcCCCHHHHHHHhccccc----------cc--cHHHHHHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHhcC
Confidence 345566777888887655421 01 1122344555777999999986 5667777999999999999999
Q ss_pred CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-cCCeEEEEcCCCCC--cccCHHHHHH
Q psy13354 112 PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-NKPKLIIAGASAYS--QYIDFERFYH 188 (1342)
Q Consensus 112 pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-~~~~liv~~~s~~~--~~~~l~~I~~ 188 (1342)
+||+|+++...+++.. ........|.. ++.++.++++.+|++++++.+++ .+++++++++++++ ...++++|.+
T Consensus 82 ~gd~Vl~~~~~~~~~~-~~~~~~~~g~~--~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~~~~l~~i~~ 158 (392)
T 2z9v_A 82 PDDVVLNLASGVYGKG-FGYWAKRYSPH--LLEIEVPYNEAIDPQAVADMLKAHPEITVVSVCHHDTPSGTINPIDAIGA 158 (392)
T ss_dssp TTCCEEEEESSHHHHH-HHHHHHHHCSC--EEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEEGGGTEECCHHHHHH
T ss_pred CCCEEEEecCCcccHH-HHHHHHHcCCc--eEEeeCCCCCCCCHHHHHHHHhcCCCCcEEEEeccCCCCceeccHHHHHH
Confidence 9999998876554432 22333445664 44556666678999999999964 35667777665555 4458999999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-------------
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV------------- 253 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~------------- 253 (1342)
+|++||++||+|++|+.|.... .... .+|++++|+||++.|+.| |++++++++++.++...
T Consensus 159 l~~~~~~~li~D~a~~~g~~~~----~~~~~~~d~~~~s~sK~~~~~~g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~ 234 (392)
T 2z9v_A 159 LVSAHGAYLIVDAVSSFGGMKT----HPEDCKADIYVTGPNKCLGAPPGLTMMGVSERAWAKMKANPLAPRASMLSIVDW 234 (392)
T ss_dssp HHHHTTCEEEEECTTTBTTBSC----CGGGGTCSEEEECSSSTTCCCSCCEEEEECHHHHHHHHTCTTSCCSSTTCSGGG
T ss_pred HHHHcCCeEEEEcccccCCccc----ccccccceEEEecCcccccCCCceeEEEECHHHHHHhhhccCCCCceeccHHHH
Confidence 9999999999999998654311 1111 268999999999878888 99999999888775421
Q ss_pred ------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC---CCeEEEEEccCCC
Q psy13354 254 ------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT---KSHIILVDLRNKK 324 (1342)
Q Consensus 254 ------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~---~~~~v~i~~~~~~ 324 (1342)
.....++++...+.++..++......++++..+++.++++++.+.|.+.|+++..++. ..+++++.++...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 314 (392)
T 2z9v_A 235 ENAWSRDKPFPFTPSVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAMGLSVWAASDSIASPTTTAVRTPDGV 314 (392)
T ss_dssp TTTTSTTSCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCTTEEEEECCTTC
T ss_pred HhhhcccCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCeeccCCccccCCceEEEECCCCC
Confidence 1122344445555555555544433237778899999999999999888877643121 3577888886433
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc-ccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA-ITT 368 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~-~~t 368 (1342)
...++...+.+++||.+.++..+. ..+.+|+++.. .++
T Consensus 315 ~~~~l~~~L~~~~gi~v~~g~~~~------~~~~lRi~~~~~~~~ 353 (392)
T 2z9v_A 315 DEKALRQAARARYGVVFSSGRGET------LGKLTRIGHMGPTAQ 353 (392)
T ss_dssp CHHHHHHHHHHHHCEECEECCGGG------TTTEEEEECCGGGCS
T ss_pred CHHHHHHHHHhcCCEEEecCCCCC------CCCeEEEeCcccccC
Confidence 344566666655599998765322 13579999543 443
No 51
>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}
Probab=99.87 E-value=4.9e-21 Score=231.12 Aligned_cols=343 Identities=10% Similarity=0.056 Sum_probs=229.0
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
+++++.+++..+..+..... ....+.+..+.+. .++.+.+++.+.+.+. . ..|....+..++++++++++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~------~~y~~~~g~~~l~~~la~~~ 75 (411)
T 2o0r_A 4 VSRLRPYATTVFAEMSALAT-RIGAVNLGQGFPDEDGPPKMLQAAQDAIAGG-V------NQYPPGPGSAPLRRAIAAQR 75 (411)
T ss_dssp CGGGGGGSSCHHHHHHHHHH-TTTCEESSCSSCSSCCCHHHHHHHHHHHHTT-C------CSCCCTTCCHHHHHHHHHHH
T ss_pred hhHhHhcCccHHHHHHHHhh-cCCeeeccCcCCCCCCCHHHHHHHHHHHhcC-C------CCCCCCCCCHHHHHHHHHHH
Confidence 34555566555555544332 3356777777644 4466899988887531 1 12333344568889888888
Q ss_pred HHHhCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC---CCCCCH
Q psy13354 83 KKIFNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK---KEKIDY 155 (1342)
Q Consensus 83 a~~~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~---~~~id~ 155 (1342)
.+.+|.+ + .+++++||++|+..++.+++++||+|++..+.|+++ ...+...|..+ +.++.+. ++.+|+
T Consensus 76 ~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~~~~gd~Vl~~~~~y~~~---~~~~~~~g~~~--~~v~~~~~~~~~~~d~ 150 (411)
T 2o0r_A 76 RRHFGVDYDPETEVLVTVGATEAIAAAVLGLVEPGSEVLLIEPFYDSY---SPVVAMAGAHR--VTVPLVPDGRGFALDA 150 (411)
T ss_dssp HHHHCCCCCTTTSEEEEEHHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEE--EEEECEEETTEEECCH
T ss_pred HHHcCCCCCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEeCCCcHhH---HHHHHHcCCEE--EEeeccccccCCCCCH
Confidence 8877743 3 566665889999999999999999999888666554 34455667644 4445443 467899
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCcEEEe
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFADFITS 225 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~Divv~ 225 (1342)
+++++.+++ ++++++++++++| +. .++++|+++|++||++||+|++|+.+.+.+....+. + ...|++++
T Consensus 151 ~~l~~~l~~-~~~~v~l~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~ 229 (411)
T 2o0r_A 151 DALRRAVTP-RTRALIINSPHNPTGAVLSATELAAIAEIAVAANLVVITDEVYEHLVFDHARHLPLAGFDGMAERTITIS 229 (411)
T ss_dssp HHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTTGGGEEEEE
T ss_pred HHHHHhhcc-CceEEEEeCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcChhhccCCCCCEEEEe
Confidence 999998865 4566666665555 22 247999999999999999999998765432222221 1 13589999
Q ss_pred cCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 226 TTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 226 S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
|+||++ |+.| ||+++++++++.+........++ .+.+.+.++..++... .+++++.++++.++++++.+.|.+.
T Consensus 230 s~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 306 (411)
T 2o0r_A 230 SAAKMF-NCTGWKIGWACGPAELIAGVRAAKQYLSYV-GGAPFQPAVALALDTE-DAWVAALRNSLRARRDRLAAGLTEI 306 (411)
T ss_dssp EHHHHT-TCTTTCEEEEECCHHHHHHHHHHHHHHTSC-CCTTHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred echhhc-CCccceEEEEeeCHHHHHHHHHHHhhccCC-CChHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 999999 5555 99999998888776533222222 2234455554444332 4467788899999999999999988
Q ss_pred CcEEeeCCCCCeEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCC-------Cccccccccccccc
Q psy13354 303 GIRIVSGGTKSHIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPE-------KPYFTSGIRLGSSA 365 (1342)
Q Consensus 303 g~~~~~~~~~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~-------~~~~~~~lRi~~~~ 365 (1342)
|+.+.. +..++++|+.++.. ..+.++...+++++||.+.++..+.... .....+++|++++.
T Consensus 307 g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~~~~~~~~~~~~~~iRis~~~ 377 (411)
T 2o0r_A 307 GFAVHD-SYGTYFLCADPRPLGYDDSTEFCAALPEKVGVAAIPMSAFCDPAAGQASQQADVWNHLVRFTFCK 377 (411)
T ss_dssp TCEECC-CCBSSEEEEECGGGTCCCHHHHHHHHHHHHSEECEEGGGGSCCC--------CCGGGCEEEECCS
T ss_pred CCEecC-CCeeEEEEEecCCCCCCCHHHHHHHHHHhCCEEEcChhhhCCCccccccccccCCCCeEEEEecC
Confidence 888754 45567899998752 2345677777766799998865431110 00014679999864
No 52
>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.87 E-value=6e-21 Score=224.66 Aligned_cols=308 Identities=15% Similarity=0.067 Sum_probs=212.9
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~a 108 (1342)
+.+.+++..+++.+++++.+.+.. . .+ .........+++++++++|.+ +.+++++||++|+..++.+
T Consensus 3 ~l~~~~p~~~~~~v~~a~~~~~~~-----~---~~----~~~~~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~ 70 (352)
T 1iug_A 3 WLLTPGPVRLHPKALEALARPQLH-----H---RT----EAAREVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKN 70 (352)
T ss_dssp EECSSSSCCCCHHHHHHHHSCCCC-----T---TS----HHHHHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHH
T ss_pred ccccCCCCCCCHHHHHHhccCCCC-----c---cC----HHHHHHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHh
Confidence 456778888899899997765521 0 11 122344555777999999987 4566666999999999999
Q ss_pred ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 109 VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 109 l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
++.|||+|+++...++++. ........|. +++.++.++++.+|++++++ .+++++++++++++ ...++++|
T Consensus 71 ~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~----~~~~~v~~~~~~nptG~~~~l~~i 143 (352)
T 1iug_A 71 LFAPGERVLVPVYGKFSER-FYEIALEAGL--VVERLDYPYGDTPRPEDVAK----EGYAGLLLVHSETSTGALADLPAL 143 (352)
T ss_dssp HCCTTCEEEEEECSHHHHH-HHHHHHHTTC--EEEEEECCTTCCCCTTTSCC----SSCSEEEEESEETTTTEECCHHHH
T ss_pred ccCCCCeEEEEeCCchhHH-HHHHHHHcCC--ceEEEeCCCCCCCCHHHHhc----cCCcEEEEEEecCCcceecCHHHH
Confidence 9999999998886665543 3333455676 44555666667789888876 34566666666555 44589999
Q ss_pred HHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHH---------Hh---
Q psy13354 187 YHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKI---------IN--- 250 (1342)
Q Consensus 187 ~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~---------l~--- 250 (1342)
.++|++| |++||+|++|+.|.... .... .+|++++|+||++.|+.| |++++++++++. +.
T Consensus 144 ~~l~~~~~~~~~li~D~a~~~~~~~~----~~~~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (352)
T 1iug_A 144 ARAFKEKNPEGLVGADMVTSLLVGEV----ALEAMGVDAAASGSQKGLMCPPGLGFVALSPRALERLKPRGYYLDLAREL 219 (352)
T ss_dssp HHHHHHHCTTCEEEEECTTTBTTBCC----CSGGGTCSEEEEESSSTTCCCSCEEEEEECHHHHHTCCCCSSTTCHHHHH
T ss_pred HHHHHhhCCCCEEEEECCccccCcce----eccccCeeEEEecCcccccCCCceeEEEECHHHHHHhhCCCceeeHHHHH
Confidence 9999999 99999999998654311 1111 368999999998878888 999999876644 11
Q ss_pred -hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 251 -SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 251 -~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
........++++.+.+.++..++..... ++++..+++.++++++.+.|++.|+++..+....+++|+.++......++
T Consensus 220 ~~~~~~~~~~~~~~~~~~a~~~al~~~~~-~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (352)
T 1iug_A 220 KAQKEGESAWTPAINLVLAVAAVLEEVLP-RLEEHLALKAWQNALLYGVGEEGGLRPVPKRFSPAVAAFYLPEGVPYARV 298 (352)
T ss_dssp HHHTTTCCSSCCCHHHHHHHHHHHHHHGG-GHHHHHHHHHHHHHHHHHHHHHTTCEESCSSBCTTCEEEECCTTCCHHHH
T ss_pred hhcccCCCCCCCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCcccccccCCeEEEEEcCCCCCHHHH
Confidence 1111223345555556665555555443 47788899999999999999988888754221467888888643334455
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...+. ++||.+.++..+. ..+++|++++..++
T Consensus 299 ~~~l~-~~gi~v~~~~~~~------~~~~iRi~~~~~~~ 330 (352)
T 1iug_A 299 KEAFA-QRGAVIAGGQGPL------KGKVFRLSLMGAYD 330 (352)
T ss_dssp HHHHH-TTTEECEECCGGG------TTTEEEECCCSSCC
T ss_pred HHHHH-HCCEEEEeCCCcc------CCCEEEEEccccCC
Confidence 55555 5599998765221 23579999987655
No 53
>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*
Probab=99.87 E-value=4.1e-21 Score=229.62 Aligned_cols=315 Identities=16% Similarity=0.131 Sum_probs=219.0
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~a 105 (1342)
..+.+.+++..+++.+.+++.+.+.. . ......+...++++++++++|.+. .+++++||++|+..+
T Consensus 23 ~~~~~~p~p~~~~~~v~~a~~~~~~~-----~-------~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~ 90 (393)
T 3kgw_A 23 TRLLLGPGPSNLAPRVLAAGSLRMIG-----H-------MQKEMLQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETA 90 (393)
T ss_dssp CCEECSSSCCCCCHHHHHHTTCCCCC-----T-------TSHHHHHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHH
T ss_pred cceeccCCCCCCCHHHHHHhcccccC-----c-------ccHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHH
Confidence 44667778888888888886653211 0 112234566667889999999863 366777999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.+++.+||+|++....+.+. .........|. +++.++.++++.+|++++++.+++.+++++++++++++ ...++
T Consensus 91 ~~~~~~~gd~vl~~~~~~~~~-~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~~l 167 (393)
T 3kgw_A 91 LFNLLEPGDSFLTGTNGIWGM-RAAEIADRIGA--RVHQMIKKPGEHYTLQEVEEGLAQHKPVLLFLVHGESSTGVVQPL 167 (393)
T ss_dssp HHHHCCTTCEEEEEESSHHHH-HHHHHHHHTTC--EEEEEECCTTCCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCC
T ss_pred HHhcCCCCCEEEEEeCCchhH-HHHHHHHHcCC--ceEEEeCCCCCCCCHHHHHHHHhhCCCcEEEEeccCCcchhhccH
Confidence 999999999999875332111 12344556676 45555666677899999999998756677676666655 44489
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCC-------
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFP------- 255 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~------- 255 (1342)
++|.++|++||++||+|++|+.|...... ....+|++++|+||+++|+.| |++++++++++.+......
T Consensus 168 ~~i~~l~~~~~~~li~De~~~~g~~~~~~---~~~~~d~~~~s~sK~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (393)
T 3kgw_A 168 DGFGELCHRYQCLLLVDSVASLGGVPIYM---DQQGIDIMYSSSQKVLNAPPGISLISFNDKAKYKVYSRKTKPVSFYTD 244 (393)
T ss_dssp TTHHHHHHHTTCEEEEECTTTTTTSCCCT---TTTTCCEEEEESSSTTCCCSSCEEEEECHHHHHHHHTCSSCCSCSTTC
T ss_pred HHHHHHHHHcCCEEEEECCccccCcccch---hhcCCCEEEecCcccccCCCceeEEEECHHHHHHHhccCCCCCceeec
Confidence 99999999999999999999865431110 011368999999999977887 9999999998888653221
Q ss_pred ---------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC---CCCeEEE
Q psy13354 256 ---------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG---TKSHIIL 317 (1342)
Q Consensus 256 ---------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~---~~~~~v~ 317 (1342)
+..++++....+++..++......+++++.+++.++++++.+.|++.|+++..+. ...++++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~ 324 (393)
T 3kgw_A 245 ITYLAKLWGCEGETRVIHHTTPVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMGLKFFVKDPEIRLPTITT 324 (393)
T ss_dssp HHHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSSSSGGGBCSSEEE
T ss_pred HHHHHHhhhhccccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCeeccCChhhcCCeEEE
Confidence 1123444555555555555444445788899999999999999999888765321 1245677
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.++......++...+++++||.+.++..+. ..+++|+++...
T Consensus 325 ~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~------~~~~iRi~~~~~ 367 (393)
T 3kgw_A 325 VTVPAGYNWRDIVSYVLDHFSIEISGGLGPT------EERVLRIGLLGY 367 (393)
T ss_dssp EECCTTBCHHHHHHHHHHHHCEECBCCCGGG------TTTEEEEECCGG
T ss_pred EeCCCCCCHHHHHHHHHHhCCEEEeCCcccC------CCCEEEEEeccc
Confidence 8776544455677777776699998754322 245799998443
No 54
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf structural genomics, center for structural genomics of INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus anthracis str} PDB: 3t32_A*
Probab=99.87 E-value=5.9e-21 Score=227.66 Aligned_cols=317 Identities=13% Similarity=0.102 Sum_probs=218.8
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sGs~A 101 (1342)
++.|.+..+++.+ ++.+.+++.+.+... ..+|+.. ..++++++++++++.+| .+ +.+++++||++|
T Consensus 24 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~~~--------~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a 94 (383)
T 3kax_A 24 EELIHAWIADMDFEVPQPIQTALKKRIEHP-IFGYTLP--------PENIGDIICNWTKKQYNWDIQKEWIVFSAGIVPA 94 (383)
T ss_dssp SCCEECCCSSCSSCCCHHHHHHHHHHHHSC-CCCCCCC--------CTTHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred CCeeecccccCCCCCCHHHHHHHHHHHhcC-CCCCCCC--------CHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHH
Confidence 3568887777554 556999988887531 1122211 24677888889999988 33 556666699999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC---CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN---KKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~---~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
+..++.+++++||+|++..+. +......+...|. +++.++.+ .++.+|++++++.+.+ ++++++++++++|
T Consensus 95 ~~~~~~~l~~~gd~vl~~~~~---~~~~~~~~~~~g~--~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~np 168 (383)
T 3kax_A 95 LSTSIQAFTKENESVLVQPPI---YPPFFEMVTTNNR--QLCVSPLQKQNDTYAIDFEHLEKQFQQ-GVKLMLLCSPHNP 168 (383)
T ss_dssp HHHHHHHHCCTTCEEEECSSC---CHHHHHHHHHTTC--EEEECCCEEETTEEECCHHHHHHHHTT-TCCEEEEESSBTT
T ss_pred HHHHHHHhCCCCCEEEEcCCC---cHHHHHHHHHcCC--EEEeccceecCCcEEEcHHHHHHHhCc-CCeEEEEeCCCCC
Confidence 999999999999999976644 4444555566777 45555554 2456899999999954 5566665666665
Q ss_pred -c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEE-ec
Q psy13354 179 -Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILM-KK 243 (1342)
Q Consensus 179 -~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~-~~ 243 (1342)
+ . .++++|+++|++||++||+||+|+.+.+.+....+... ..+++++|+||++ |+.| ||+++ ++
T Consensus 169 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~ 247 (383)
T 3kax_A 169 IGRVWKKEELTKLGSLCTKYNVIVVADEIHSDIIYADHTHTPFASLSEELAARTITCMAPSKTF-NIAGLQASIIIIPNE 247 (383)
T ss_dssp TTBCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHH-TCGGGCCEEEECCCH
T ss_pred CCcCcCHHHHHHHHHHHHHCCCEEEEEccccccccCCCCceeHhhcCccccCcEEEEEEChhhc-cCcchhheEEEeCCH
Confidence 2 2 25778888899999999999999765543322222221 1248899999999 6555 99988 57
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEcc
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~ 321 (1342)
++++.+......+..++++.+.+.++..++.. ..++.++..+++.++++++.+.|++. |+.+.. +.++++.|+.++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 325 (383)
T 3kax_A 248 KLRQAFTSIQYRQGFHGLNIFAYTAMQSAYTE-CNDWLNEIRFYIEDNAKFACEYIKDHIPTLSVMK-PEGSFLLWIDCS 325 (383)
T ss_dssp HHHHHHHHHHHHTTCCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHHHHHHHHHCTTCEECC-CSBSSEEEEECG
T ss_pred HHHHHHHHHHhhcccCCCCHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec-CCceEEEEEEcc
Confidence 78887776544444445555566655555443 23457788899999999999999884 787754 456778889987
Q ss_pred CCC-CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 322 NKK-ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 322 ~~~-~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+ ...++...+++++||.+.++..++... .+++|++++.
T Consensus 326 ~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~iRi~~~~ 366 (383)
T 3kax_A 326 ALNLSQDERTKLLEEKGKIIVEPGEKYGLGG----EEHIGINIGC 366 (383)
T ss_dssp GGCCCHHHHHHHHHHTSCEECEESGGGCTTC----TTEEEEECSS
T ss_pred ccCCCHHHHHHHHHhhCCEEeECchhhcCCC----CCeEEEEEcC
Confidence 643 344666666667899999875544332 3679999873
No 55
>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1
Probab=99.87 E-value=1.1e-20 Score=226.15 Aligned_cols=315 Identities=11% Similarity=0.085 Sum_probs=217.3
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
++.+.+..+.+. .++.+.+++.+.+... . ..|+...+..++++++++++.+.+|.+ +.+++++||++|
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~------~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a 102 (388)
T 1j32_A 30 IDVCSFSAGEPDFNTPKHIVEAAKAALEQG-K------TRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQS 102 (388)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHHTT-C------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred CCEEECCCCCCCCCCCHHHHHHHHHHHhcC-C------CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHH
Confidence 456888777654 3566888888777431 1 123334455688998888888877752 456666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++.+||+|++....|++ ....+...|.. ++.++.+. ++.+|++++++.+++ ++++++++++++|
T Consensus 103 ~~~~~~~~~~~gd~vl~~~~~~~~---~~~~~~~~g~~--~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~npt 176 (388)
T 1j32_A 103 IFNLMLAMIEPGDEVIIPAPFWVS---YPEMVKLAEGT--PVILPTTVETQFKVSPEQIRQAITP-KTKLLVFNTPSNPT 176 (388)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTH---HHHHHHHTTCE--EEEECCCGGGTTCCCHHHHHHHCCT-TEEEEEEESSCTTT
T ss_pred HHHHHHHhcCCCCEEEEcCCCChh---HHHHHHHcCCE--EEEecCCcccCCCCCHHHHHHhcCc-CceEEEEeCCCCCC
Confidence 999999999999999987765544 34445666764 45555553 577899999998875 4566665555555
Q ss_pred cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 ~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+. .++++|+++|++||++||+|++|+.+.+.+..+.+... ..+++++|+||++ |+.| ||+++++++
T Consensus 177 G~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~sK~~-~~~G~r~G~~~~~~~~ 255 (388)
T 1j32_A 177 GMVYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTY-AMTGWRVGFLAGPVPL 255 (388)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTT-TCTTTCCEEEECCHHH
T ss_pred CcCCCHHHHHHHHHHHHHcCCEEEEEccchhcccCCCCCCCHHHccccccCCEEEEeechhcc-CCcccceEEEEeCHHH
Confidence 22 35999999999999999999999875543322222111 2579999999999 6555 999999988
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccC-C
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRN-K 323 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~-~ 323 (1342)
++.+......+.++. +...+.++..++ +...+++++.++++.++++++.+.|.+. |+++.. +.+++++|+.++. .
T Consensus 256 ~~~l~~~~~~~~~~~-~~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~~~~ 332 (388)
T 1j32_A 256 VKAATKIQGHSTSNV-CTFAQYGAIAAY-ENSQDCVQEMLAAFAERRRYMLDALNAMPGLECPK-PDGAFYMFPSIAKTG 332 (388)
T ss_dssp HHHHHHHHHTTTCSC-CHHHHHHHHHHH-HSCSHHHHHHHHHHHHHHHHHHHHHHTCTTCBCCC-CCBTTEECCBCGGGT
T ss_pred HHHHHHHHhhcccCC-CHHHHHHHHHHH-hCCcHHHHHHHHHHHHHHHHHHHHHhhCCCCcccC-CCeeEEEEEecCCCC
Confidence 888766433333333 233444433333 3334467788899999999999999986 777643 4556778887764 2
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
....++...+++++||.+.++..++. .+++|++++
T Consensus 333 ~~~~~~~~~l~~~~gi~v~~g~~~~~------~~~iRis~~ 367 (388)
T 1j32_A 333 RSSLDFCSELLDQHQVATVPGAAFGA------DDCIRLSYA 367 (388)
T ss_dssp CCHHHHHHHHHHHHCEECEEGGGGTC------TTBEEEECC
T ss_pred CCHHHHHHHHHHhCCEEEeChhhhCC------CCcEEEEec
Confidence 23456677777657999998754432 246999986
No 56
>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*
Probab=99.87 E-value=7.6e-21 Score=230.09 Aligned_cols=348 Identities=13% Similarity=0.105 Sum_probs=235.2
Q ss_pred cccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHH
Q psy13354 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82 (1342)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~l 82 (1342)
+++++..++..+..+.... ...+.|.+..+.+. .++.+.+++.+.+.... ....|+...+..++++++++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~-~~~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~-----~~~~y~~~~g~~~lr~~la~~~ 80 (422)
T 3fvs_A 7 ARRLDGIDYNPWVEFVKLA-SEHDVVNLGQGFPDFPPPDFAVEAFQHAVSGDF-----MLNQYTKTFGYPPLTKILASFF 80 (422)
T ss_dssp CGGGTTCCCCHHHHHHHHH-HTSCCEECCCSSCSSCCCHHHHHHHHHHHHSCG-----GGGSCCCTTCCHHHHHHHHHHH
T ss_pred HHHhhccCccHHHHHHHHh-hcCCceEeCCCCCCCCCCHHHHHHHHHHHhCCC-----ccCCCCCCCCCHHHHHHHHHHH
Confidence 3455555554444444332 23466888877754 45569999888875321 0012333334568888888888
Q ss_pred HHHhCCC----CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC----------C
Q psy13354 83 KKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL----------N 148 (1342)
Q Consensus 83 a~~~g~~----~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~----------~ 148 (1342)
.+.+|.+ +.+++++||++|+..++.+++.+||+|++..+.|++ ....+...|..+..+++.. +
T Consensus 81 ~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~~~~gd~vl~~~p~~~~---~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~ 157 (422)
T 3fvs_A 81 GELLGQEIDPLRNVLVTVGGYGALFTAFQALVDEGDEVIIIEPFFDC---YEPMTMMAGGRPVFVSLKPGPIQNGELGSS 157 (422)
T ss_dssp HHHHTCCCCHHHHEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTT---HHHHHHHTTCEEEEEECBCCCCCSSSCCBG
T ss_pred HHhhCCCCCCCCcEEEECChHHHHHHHHHHHcCCCCEEEEcCCCchh---hHHHHHHcCCEEEEEecccccccccccccc
Confidence 8888764 356667688999999999999999999987766554 3445566677555554432 1
Q ss_pred CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----
Q psy13354 149 KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----- 218 (1342)
Q Consensus 149 ~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----- 218 (1342)
.++.+|++++++.+++ ++++++++++++| +. . ++++|+++|++||++||+||+|+.+.+.+..+.+...
T Consensus 158 ~~~~~d~~~l~~~~~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 236 (422)
T 3fvs_A 158 SNWQLDPMELAGKFTS-RTKALVLNTPNNPLGKVFSREELELVASLCQQHDVVCITDEVYQWMVYDGHQHISIASLPGMW 236 (422)
T ss_dssp GGSBCCHHHHHTTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTTG
T ss_pred cCCCCCHHHHHhhcCC-CceEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCCCCCCChhhccccc
Confidence 2567899999998875 4566666666665 22 2 5999999999999999999999865543322222111
Q ss_pred CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH------hccchHHHHHHHHH
Q psy13354 219 FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE------VLKPDFKIYQKQVV 289 (1342)
Q Consensus 219 ~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~------~l~~~~~~~~~~l~ 289 (1342)
..+++++|+||++ |+.| ||+++++++++.+........++ ++.+.+.++..++.. ....+++..++++.
T Consensus 237 ~~~i~~~S~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~ 314 (422)
T 3fvs_A 237 ERTLTIGSAGKTF-SATGWKVGWVLGPDHIMKHLRTVHQNSVFH-CPTQSQAAVAESFEREQLLFRQPSSYFVQFPQAMQ 314 (422)
T ss_dssp GGEEEEEEHHHHH-TCGGGCCEEEECCHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHHHHHHTTTCTTCHHHHHHHHHH
T ss_pred CcEEEEecchhcc-CCccceEEEEEeCHHHHHHHHHHHhhccCC-CCcHHHHHHHHHHhhccccccchHHHHHHHHHHHH
Confidence 1348899999999 6566 99999999888876543333333 345556665555543 13457888899999
Q ss_pred HHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC---C----------CHHHHHHHHHHCCceeeeccCCCCCC-Cccc
Q psy13354 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK---I----------TGKIAESILESANIICNKNSIPNDPE-KPYF 355 (1342)
Q Consensus 290 ~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~---~----------~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~~ 355 (1342)
++++++.+.|.+.|+.+.. +..++++|++++... . +.+++..+++++||.+.++..+..+. .+..
T Consensus 315 ~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~ 393 (422)
T 3fvs_A 315 RCRDHMIRSLQSVGLKPII-PQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKNKGLVAIPVSIFYSVPHQKHF 393 (422)
T ss_dssp HHHHHHHHHHHTTTCEEEB-CSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHHHCEECEEGGGGSCHHHHTTS
T ss_pred HHHHHHHHHHHHcCCeecC-CCeeeEEEEechhhcccccccccccccccHHHHHHHHHHhcCEEEeCcHHhcCCcCCCCC
Confidence 9999999999999988654 567889999875411 0 34778888888899999865443210 0112
Q ss_pred cccccccccc
Q psy13354 356 TSGIRLGSSA 365 (1342)
Q Consensus 356 ~~~lRi~~~~ 365 (1342)
.+++|++++.
T Consensus 394 ~~~iRis~~~ 403 (422)
T 3fvs_A 394 DHYIRFCFVK 403 (422)
T ss_dssp CSEEEEECCC
T ss_pred CCeEEEEecC
Confidence 4679999776
No 57
>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}
Probab=99.87 E-value=4.1e-21 Score=234.55 Aligned_cols=325 Identities=14% Similarity=0.115 Sum_probs=221.9
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|++..+.+. .++.+.+++.+++..... ..|+...+..++++++.+++.+.+|.+ +.+++++||++|
T Consensus 57 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~~~~------~~Y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~a 130 (447)
T 3b46_A 57 RELINLGQGFFSYSPPQFAIKEAQKALDIPMV------NQYSPTRGRPSLINSLIKLYSPIYNTELKAENVTVTTGANEG 130 (447)
T ss_dssp SCCEECCCCSCSSCCCHHHHHHHHHHTTSGGG------GSCCCTTCCHHHHHHHHHHHTTTTTSCCCGGGEEEESHHHHH
T ss_pred CCeEEccCCCCCCCCCHHHHHHHHHHHhCcCC------CCCCCCCCCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHH
Confidence 456788777533 345588888877742111 123333445688887777877777753 356666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC----------CCCCCHHHHHHHHHhcCCeEEE
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK----------KEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~----------~~~id~e~Le~~i~~~~~~liv 171 (1342)
+..++.+++.|||+|++..+.|+++ ...+...|..+..+++..+. ++.+|++++++.+++ ++++++
T Consensus 131 l~~~~~~l~~~gd~Vlv~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~ 206 (447)
T 3b46_A 131 ILSCLMGLLNAGDEVIVFEPFFDQY---IPNIELCGGKVVYVPINPPKELDQRNTRGEEWTIDFEQFEKAITS-KTKAVI 206 (447)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEEEEEEEECCGGGGTSCBCSTTSEECHHHHHTTCCT-TEEEEE
T ss_pred HHHHHHHHcCCCCEEEEeCCCchhH---HHHHHHcCCEEEEEeCCCccccccccccccCcccCHHHHHHhhcc-CCeEEE
Confidence 9999999999999999888666543 44456677755555443222 467899999998864 456666
Q ss_pred EcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C----CCCcEEEecCCccCCCCCe---e
Q psy13354 172 AGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V----PFADFITSTTHKSLRGPRG---G 237 (1342)
Q Consensus 172 ~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l----~~~Divv~S~sK~l~gp~G---G 237 (1342)
++++++| +. .++++|+++|++||++||+||+|+.+.+.+ .+.+. + ...+++++|+||++ |+.| |
T Consensus 207 l~~p~nptG~~~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~~i~i~S~sK~~-~~~G~riG 284 (447)
T 3b46_A 207 INTPHNPIGKVFTREELTTLGNICVKHNVVIISDEVYEHLYFTD-SFTRIATLSPEIGQLTLTVGSAGKSF-AATGWRIG 284 (447)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCHHHHTTEEEEEEHHHHT-TCTTSCCE
T ss_pred EeCCCCCCCcccCHHHHHHHHHHHHHcCcEEEEeccchhcccCC-CCcCHHHcCCCCCCcEEEEecCchhc-CCcchhhE
Confidence 6666665 22 369999999999999999999998654432 22221 1 12589999999999 6556 9
Q ss_pred EEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeE
Q psy13354 238 FILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHI 315 (1342)
Q Consensus 238 ~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~ 315 (1342)
|+++ ++++++.+........+ +++.+.+.++..++.... ..++++.++++.++++++.+.|.+.|+++.. +.++++
T Consensus 285 ~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~a~~~aL~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~ 362 (447)
T 3b46_A 285 WVLSLNAELLSYAAKAHTRICF-ASPSPLQEACANSINDALKIGYFEKMRQEYINKFKIFTSIFDELGLPYTA-PEGTYF 362 (447)
T ss_dssp EEECSCHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTCCEEC-CSBSSE
T ss_pred EEEeCCHHHHHHHHHHHhhccC-CCChHHHHHHHHHHhCCcchHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCeeEE
Confidence 9999 88888887653222222 334556666555554431 3467788899999999999999998887653 566889
Q ss_pred EEEEccCC---------------CCCHHHHHHHHHHCCceeeeccCCCCCCC-ccccccccccccc
Q psy13354 316 ILVDLRNK---------------KITGKIAESILESANIICNKNSIPNDPEK-PYFTSGIRLGSSA 365 (1342)
Q Consensus 316 v~i~~~~~---------------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~~~~~lRi~~~~ 365 (1342)
+|++++.. ..+.+++..+++++||.+.++..+..... ....+++|++++.
T Consensus 363 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~~~~~~~~iRls~~~ 428 (447)
T 3b46_A 363 VLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLINELGVVAIPPTEFYIKEHEKAAENLLRFAVCK 428 (447)
T ss_dssp EEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHHHTCEECBCGGGGSCGGGGGGGTTEEEEECCS
T ss_pred EEEecccccCccccccccccccCCCHHHHHHHHHHhCCEEEECchHhCCCCccCCCCCEEEEEEeC
Confidence 99998752 12346777777778999988654432110 0114579999874
No 58
>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}
Probab=99.87 E-value=2.6e-20 Score=226.54 Aligned_cols=321 Identities=14% Similarity=0.108 Sum_probs=218.2
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|.+..+.+.+ ++.+++++.+.+......+|+ ...+..++++++++++...+|.+ +.+++++||++|
T Consensus 44 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~~~g~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~a 117 (437)
T 3g0t_A 44 TKFCRMEMGVPGLPAPQIGIETEIQKLREGVASIYP------NLDGLPELKQEASRFAKLFVNIDIPARACVPTVGSMQG 117 (437)
T ss_dssp CCCEECCCCSCCSCCCHHHHHHHHHHHHHTGGGSCC------CTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHH
T ss_pred CCEEeccCcCCCCCCCHHHHHHHHHHHhCCcCcCCC------CCCChHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHH
Confidence 4668888877654 455999988887532212232 22334578887777777766643 456666688999
Q ss_pred HHHHHHHcc--CCCC--EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 102 NQAVFFSVL--NPGD--TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 102 ~~~al~al~--~pGD--~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
+..++.+++ ++|| +|++....+ ......+...|..+..+++. ++++.+|++++++++...++++++++.+++
T Consensus 118 l~~~~~~l~~~~~gd~~~Vl~~~p~~---~~~~~~~~~~g~~~~~v~~~-~~~~~~d~~~l~~~l~~~~~~~v~l~~p~n 193 (437)
T 3g0t_A 118 CFVSFLVANRTHKNREYGTLFIDPGF---NLNKLQCRILGQKFESFDLF-EYRGEKLREKLESYLQTGQFCSIIYSNPNN 193 (437)
T ss_dssp HHHHHHHHTTSCTTCSCCEEEEESCC---HHHHHHHHHHTCCCEEEEGG-GGCTTHHHHHHHHHHTTTCCCEEEEESSCT
T ss_pred HHHHHHHHhcCCCCCccEEEEeCCCc---HhHHHHHHHcCCEEEEEeec-CCCCccCHHHHHHHHhcCCceEEEEeCCCC
Confidence 999999998 9999 999876544 44445556667755555443 345678999999999444566665555555
Q ss_pred C-c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-------CCC---CCCcEEEecCCccCCCCCe---eEE
Q psy13354 178 S-Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-------NPV---PFADFITSTTHKSLRGPRG---GFI 239 (1342)
Q Consensus 178 ~-~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-------~~l---~~~Divv~S~sK~l~gp~G---G~i 239 (1342)
| + .. ++++|+++|++||++||+|++|+.+.+...... ..+ ...+++++|+||++ |+.| ||+
T Consensus 194 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~ 272 (437)
T 3g0t_A 194 PTWQCMTDEELRIIGELATKHDVIVIEDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAF-SYAGQRIGVL 272 (437)
T ss_dssp TTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTT-SCGGGCCEEE
T ss_pred CCCCcCCHHHHHHHHHHHHHCCcEEEEEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCC-CCccceeEEE
Confidence 5 2 22 488899999999999999999986555422111 111 12458899999999 6555 999
Q ss_pred EEechhHH-H-----------------HhhccCCccccCCcHHHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHH
Q psy13354 240 LMKKKYKK-I-----------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPD---FKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 240 v~~~~l~~-~-----------------l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~---~~~~~~~l~~~a~~l~~~ 298 (1342)
++++++++ . +...... ...+++...+.++..++... ..+ +++.++++.++++++.+.
T Consensus 273 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~~~~l~~~ 350 (437)
T 3g0t_A 273 MISGKLYEREYPDLEESFGRLRFGEALSSSALYA-LSSGATHSAQWGMAAMLKAC-NDGEYNFRDSVIEYGRKARIMKKM 350 (437)
T ss_dssp EECHHHHHCBCGGGHHHHSCSBHHHHHHTTHHHH-HHSSSCHHHHHHHHHHHHHH-HTTSCCHHHHHHHHHHHHHHHHHH
T ss_pred EECHHHhhhhhhcccccccccchhHHHHHHHHhh-hcCCCCHHHHHHHHHHHhCc-HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998877 5 5432221 12334455555555554443 223 788899999999999999
Q ss_pred HHhCCcEEe------eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 299 LDQRGIRIV------SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 299 L~~~g~~~~------~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
|.+.|+++. .++..++++|+.++ .....++...+++ +||.+.++..++... .+.+|++++..
T Consensus 351 L~~~g~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~-~gi~v~~~~~~~~~~----~~~iRis~~~~ 418 (437)
T 3g0t_A 351 FLDNGFNIVYDKDGNEPLADGFYFTVGYK-GMDSSKLIEKFVR-YGMCAITLKTTGSKR----NEAMRICTSLL 418 (437)
T ss_dssp HHTTTEEESSCEETTEECCSSSEEEEEET-TCCHHHHHHHHHH-TTEECEESTTTTCCC----TTCEEEECSSS
T ss_pred HHHcCCEEeccccCCCCCceeEEEEEecC-CCCHHHHHHHHHH-cCeEEeeccccCCCC----CCEEEEEEecC
Confidence 999998876 23357789999987 2334455666555 599999876655432 25699998854
No 59
>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}
Probab=99.86 E-value=8.7e-21 Score=229.00 Aligned_cols=319 Identities=15% Similarity=0.101 Sum_probs=213.3
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C--CceEecCCHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E--AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~--~~vi~~~sGs~ 100 (1342)
++.+.+..+.+. .++.+.+++.+.+.... ...|+...+..++++.+++++.+.+|. + +.+++++||++
T Consensus 37 ~~~idl~~g~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~ 110 (412)
T 2x5d_A 37 EDIIDLSMGNPDGPTPPHIVEKLCTVAQRED------THGYSTSRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKE 110 (412)
T ss_dssp CCCEECSSCCCCSCCCHHHHHHHHHTC---------------CTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHH
T ss_pred CCEEecCCCCCCCCCCHHHHHHHHHHHhCCC------CCCCCCCCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHH
Confidence 456888777654 34568888777664211 112333344568888777777776685 2 35666669999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
|+..++.+++++||+|++..+.|++ ....+...|.. ++.++.++ ++.+|++++++.+++ ++++++++.+++|
T Consensus 111 a~~~~~~~~~~~gd~Vl~~~p~~~~---~~~~~~~~g~~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~l~~p~np 184 (412)
T 2x5d_A 111 GLAHLMLATLDHGDTILVPNPSYPI---HIYGAVIAGAQ--VRSVPLVPGIDFFNELERAIRESIP-KPRMMILGFPSNP 184 (412)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHH---HHHHHHHHTCE--EEEEECSTTSCHHHHHHHHHHTEES-CCSEEEEESSCTT
T ss_pred HHHHHHHHhCCCCCEEEEcCCCchh---HHHHHHHcCCE--EEEeecCCccCCCCCHHHHHHhccc-CceEEEECCCCCC
Confidence 9999999999999999988755544 34444556664 44445553 345788999988764 4566666555665
Q ss_pred -cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+. .++++|+++|++||++||+|++|+.+.+.+....+. + ...+++++|+||++ |+.| ||+++++++
T Consensus 185 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~ 263 (412)
T 2x5d_A 185 TAQCVELDFFERVVALAKQYDVMVVHDLAYADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSY-NMAGWRIGFMVGNPEL 263 (412)
T ss_dssp TCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CC-SCTTSCCEEEEECHHH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCCChhhccCccCcEEEEecCcccc-CCcccceEEEEcCHHH
Confidence 22 257999999999999999999998765432222211 1 12578999999999 5455 999999998
Q ss_pred HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCC-
Q psy13354 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKK- 324 (1342)
Q Consensus 246 ~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~- 324 (1342)
++.+........ .+++.+.+.++..+ .+...++++..++++.++++++.+.|.+.|+.+.. +.+++++|+.++...
T Consensus 264 ~~~l~~~~~~~~-~~~~~~~~~a~~~~-l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~ 340 (412)
T 2x5d_A 264 VSALARIKSYHD-YGTFTPLQVAAIAA-LEGDQQCVRDIARQYQQRRDVLVKGLREAGWMVEN-PKASMYVWAKIPEPYA 340 (412)
T ss_dssp HHHHHHHHHHHC-CCCCHHHHHHHHHH-HHSCSHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC-CSBSSEEEEECCTTTG
T ss_pred HHHHHHHHhhhc-cCCCHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHHHHHHHHCCCEecC-CCeeeEEEEEcCCccC
Confidence 888765332222 23345555554444 34334467888899999999999999988877643 445678999886432
Q ss_pred --CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 --ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 --~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
...++...+++++||.+.++..+... ..+++|++++.
T Consensus 341 ~~~~~~~~~~l~~~~gi~v~~g~~f~~~----~~~~iRis~~~ 379 (412)
T 2x5d_A 341 HLGSLEFAKKLLQDAKVSVSPGIGFGDY----GDDHVRFALIE 379 (412)
T ss_dssp GGCHHHHHHHHHHHHCEECEEGGGGCGG----GTTEEEEECCS
T ss_pred CCCHHHHHHHHHHHCCEEEeCchhhCCC----CCCeEEEEecC
Confidence 34567777777679999987554321 14579999886
No 60
>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}
Probab=99.86 E-value=7.6e-21 Score=226.43 Aligned_cols=316 Identities=12% Similarity=0.029 Sum_probs=217.4
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---C-ceEecCCHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---A-ANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~-~vi~~~sGs~ 100 (1342)
++.+.+..+++.+ +|.+.+++.+.+.... ...|+...+..++++++++++.+.+|.+ + .+++++||++
T Consensus 25 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~ 98 (376)
T 2dou_A 25 VGLIDLSIGSTDLPPPEAPLKALAEALNDPT------TYGYCLKSCTLPFLEEAARWYEGRYGVGLDPRREALALIGSQE 98 (376)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHTTCGG------GSSCCCHHHHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHHHHHHhCCC------cCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHH
Confidence 4568888777553 4668888887764211 1123334467788887777777777875 3 6677769999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
|+..++.+++++||+|++..+.++ .....+...|.. ++.++.++++.+|++++++.+++ ++++++++++++| +
T Consensus 99 a~~~~~~~l~~~gd~vl~~~p~y~---~~~~~~~~~g~~--~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG 172 (376)
T 2dou_A 99 GLAHLLLALTEPEDLLLLPEVAYP---SYFGAARVASLR--TFLIPLREDGLADLKAVPEGVWR-EAKVLLLNYPNNPTG 172 (376)
T ss_dssp HHHHHHHHHCCTTCEEEEESSCCH---HHHHHHHHTTCE--EEEECBCTTSSBCGGGSCHHHHH-HEEEEEECSSCTTTC
T ss_pred HHHHHHHHhcCCCCEEEECCCCcH---hHHHHHHHcCCE--EEEeeCCCCCCCCHHHHHHhhcc-CceEEEECCCCCCcC
Confidence 999999999999999997765444 344445566764 44445555567899999988864 4567777666665 2
Q ss_pred c-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 180 Y-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 180 ~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
. . ++++|+++|++||++||+||+|+.+.+.+ ...+.+. ..+++++|+||++ |+.| ||+++++++++
T Consensus 173 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~ 250 (376)
T 2dou_A 173 AVADWGYFEEALGLARKHGLWLIHDNPYVDQVYEG-EAPSPLALPGAKERVVELFSLSKSY-NLAGFRLGFALGSEEALA 250 (376)
T ss_dssp CCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSS-CCCCGGGSTTGGGTEEEEEEHHHHH-TCGGGCCEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCcEEEEecchhhc-CChhheeEEEecCHHHHH
Confidence 2 2 48899999999999999999998765432 2222221 2468899999999 5455 99999999988
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+......+.++ ++.+.+.++..++. ....+++..++++.++++++.+.|.+. +.+.. +..++++|+.++......
T Consensus 251 ~l~~~~~~~~~~-~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~-~~~~~~~~~~~~~~~~~~ 326 (376)
T 2dou_A 251 RLERVKGVIDFN-QYAGVLRMGVEALK-TPKEVVRGYARVYRERALGMAEALKGV-LSLLP-PRATMYLWGRLPEGVDDL 326 (376)
T ss_dssp HHHHHHHHHCCC-SCHHHHHHHHHHHT-SCHHHHHHHHHHHHHHHHHHHHHHTTT-SEECC-CCBSSEEEEECCTTCCHH
T ss_pred HHHHHHHhcccC-CCHHHHHHHHHHHh-CcHHHHHHHHHHHHHHHHHHHHHHHHh-cCccC-CCeeEEEEEECCCCCCHH
Confidence 887643333333 33455555444443 323467778889999999999999887 76643 445778999987543345
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++...++++ ||.+.++..++.. ..+++|++++.
T Consensus 327 ~~~~~l~~~-gi~v~~g~~f~~~----~~~~~Ris~~~ 359 (376)
T 2dou_A 327 EFGLRLVER-GVALAPGRGFGPG----GKGFVRIALVR 359 (376)
T ss_dssp HHHHHHHHT-TEECEEGGGGCGG----GTTEEEEECCS
T ss_pred HHHHHHHHC-CEEEcCchhhCCC----CCCeEEEEecC
Confidence 667777666 9999987544321 14579999875
No 61
>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*
Probab=99.86 E-value=1.1e-20 Score=227.71 Aligned_cols=326 Identities=13% Similarity=0.052 Sum_probs=223.8
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~ 100 (1342)
.+.|.|..+.+. .++.+.+++.+.+......+ |+...+..++++++++++.+.+|.+ +.+++++||++
T Consensus 23 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~ 96 (410)
T 3e2y_A 23 PSVVNLGQGFPDISPPSYVKEELSKAAFIDNMNQ------YTRGFGHPALVKALSCLYGKIYQRQIDPNEEILVAVGAYG 96 (410)
T ss_dssp TTSEECSSCCCCSCCCHHHHHHHHHHHTCGGGGS------CCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHH
T ss_pred CCeEEecCCCCCCCCCHHHHHHHHHHHhCccccC------CCCCCChHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHH
Confidence 456888777654 45669999888875322212 2223344688887888888776643 45666658889
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC---------CCCCCCCHHHHHHHHHhcCCeEEE
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL---------NKKEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~---------~~~~~id~e~Le~~i~~~~~~liv 171 (1342)
|+..++.+++.+||+|++....|++ ....+...|..+..+++.. +.++.+|++++++.+++ ++++++
T Consensus 97 a~~~~~~~~~~~gd~vl~~~p~~~~---~~~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~~~d~~~l~~~~~~-~~~~v~ 172 (410)
T 3e2y_A 97 SLFNSIQGLVDPGDEVIIMVPFYDC---YEPMVRMAGAVPVFIPLRSKPTDGMKWTSSDWTFDPRELESKFSS-KTKAII 172 (410)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCTT---HHHHHHHTTCEEEEEECEECCCCSSCCBGGGEECCHHHHHTTCCT-TEEEEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCchh---hHHHHHHcCCEEEEEeccccccccccccccCCcCCHHHHHhhcCC-CceEEE
Confidence 9999999999999999987755543 3445566677555554431 14567899999998865 456666
Q ss_pred EcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eE
Q psy13354 172 AGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 172 ~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~ 238 (1342)
++++++| +. .++++|+++|++||++||+|++|+.+.+.+..+.+... ..+++++|+||++ |+.| ||
T Consensus 173 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~ 251 (410)
T 3e2y_A 173 LNTPHNPLGKVYTRQELQVIADLCVKHDTLCISDEVYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTF-SVTGWKLGW 251 (410)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHS-SCGGGCCEE
T ss_pred EeCCCCCCCcCcCHHHHHHHHHHHHHcCcEEEEEhhhhhcccCCCCCCCHHHcCCccCeEEEEecchhhc-CCCCceEEE
Confidence 6666665 22 37999999999999999999999865543322222111 1248899999999 6556 99
Q ss_pred EEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH------hccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC
Q psy13354 239 ILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE------VLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK 312 (1342)
Q Consensus 239 iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~------~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~ 312 (1342)
+++++++++.+........++ ++.+.+.++..++.. ....++++..+++.++++++.+.|.+.|+.+.. +..
T Consensus 252 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~ 329 (410)
T 3e2y_A 252 SIGPAHLIKHLQTVQQNSFYT-CATPLQAALAEAFWIDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSVGLKPIV-PDG 329 (410)
T ss_dssp EECCHHHHHHHHHHHHTTTCC-CCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTTTCEEEB-CSB
T ss_pred EEECHHHHHHHHHHHHhhccC-CChHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHHHHHCCCeecC-CCc
Confidence 999999888877643333333 345556655555543 124478888899999999999999999988654 567
Q ss_pred CeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCC-Cccccccccccccc
Q psy13354 313 SHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPE-KPYFTSGIRLGSSA 365 (1342)
Q Consensus 313 ~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~~~~~lRi~~~~ 365 (1342)
++++|+++..... +.+++..+++++||.+.++..+.... .+...+++|++++.
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~~ 394 (410)
T 3e2y_A 330 GYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHKKLTAIPVSAFCDSKSKPHFEKLVRFCFIK 394 (410)
T ss_dssp SSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHHSEECEEGGGGSCTTTHHHHTTEEEEECCC
T ss_pred cEEEEEEchhhhcccccccccccCHHHHHHHHHHHcCEEEeCchhhCCCCCCCCCCCEEEEEEcC
Confidence 8899998865221 13777778888899999875443321 01124679999765
No 62
>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}
Probab=99.86 E-value=1.9e-20 Score=225.58 Aligned_cols=317 Identities=13% Similarity=0.070 Sum_probs=219.1
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----CceEecCCHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~vi~~~sGs~A 101 (1342)
+.|.+..+.+.+ ++.+.+++.+.+......+| +...+..++++++++++.+.+|.+ +.+++++||++|
T Consensus 48 ~~idl~~g~~~~~~~~~v~~a~~~~~~~~~~~~y------~~~~g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~a 121 (404)
T 2o1b_A 48 PLINMAVGIPDGPTPQGIIDHFQKALTIPENQKY------GAFHGKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNG 121 (404)
T ss_dssp CCEECCCCSCSSCCCHHHHHHHHHHTTCHHHHSC------CCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHH
T ss_pred CEEecCCcCCCCCCCHHHHHHHHHHHhCCCCCCC------CCCCCCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHH
Confidence 457887777553 45688888777632111122 222345688887777777777864 466777699999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+..++.+++++||+|++..+.++++ ...+...|.. ++.++.++ ++.+|++++++.+++ ++++++++++++| +
T Consensus 122 l~~~~~~l~~~gd~Vl~~~p~y~~~---~~~~~~~g~~--~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~l~~p~nptG 195 (404)
T 2o1b_A 122 LVAVPTCVINPGDYVLLPDPGYTDY---LAGVLLADGK--PVPLNLEPPHYLPDWSKVDSQIID-KTKLIYLTYPNNPTG 195 (404)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCSSH---HHHHHHTTCE--EEEEECCTTTCCCCGGGSCHHHHH-HEEEEEECSSCTTTC
T ss_pred HHHHHHHhcCCCCEEEEcCCCchhH---HHHHHHCCCE--EEEeccCcccCcCCHHHHHHhhcc-CceEEEEcCCCCCCC
Confidence 9999999999999999887665544 3444566764 44445543 456899999998864 4567776666665 2
Q ss_pred c-c---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHH
Q psy13354 180 Y-I---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKK 247 (1342)
Q Consensus 180 ~-~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~ 247 (1342)
. . ++++|+++|++||++||+||+|+.+.+.+ ...+... ..+++++|+||++ |+.| ||+++++++++
T Consensus 196 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~ 273 (404)
T 2o1b_A 196 STATKEVFDEAIAKFKGTDTKIVHDFAYGAFGFDA-KNPSILASENGKDVAIEIYSLSKGY-NMSGFRVGFAVGNKDMIQ 273 (404)
T ss_dssp CCCCHHHHHHHHHHHTTSSCEEEEECTTTTCBSSS-CCCCGGGSTTHHHHEEEEEESTTTT-TCGGGCCEEEEECHHHHH
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEccchhcccCC-CCCChhhcCCCCCCEEEEEecchhc-cCchhheEeEecCHHHHH
Confidence 2 2 58899999999999999999998754422 2222222 1368899999999 5455 99999999888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+......+.+ +++.+.+.++..++... ..++++.++++.++++++.+.|.+.|+.+.. +..++++|+.++....+.
T Consensus 274 ~l~~~~~~~~~-~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~ 350 (404)
T 2o1b_A 274 ALKKYQTHTNA-GMFGALQDAAIYALNHY-DDFLEEQSNVFKTRRDRFEAMLAKADLPFVH-AKGGIYVWLETPPGYDSE 350 (404)
T ss_dssp HHHHHHHHHCC-CCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHTTCCEEC-CCBSSEEEEECCTTCCHH
T ss_pred HHHHHHhhccC-CCCHHHHHHHHHHHhcC-HHHHHHHHHHHHHHHHHHHHHHHhcCCeecC-CCcceEEEEeCCCCCCHH
Confidence 87654332222 34455555555554432 3467788889999999999999988887644 445678999987543345
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++...+++++||.+.++..++.. ..+++|++++.
T Consensus 351 ~l~~~l~~~~gi~v~~g~~f~~~----~~~~iRis~~~ 384 (404)
T 2o1b_A 351 QFEQFLVQEKSILVAPGKPFGEN----GNRYVRISLAL 384 (404)
T ss_dssp HHHHHHHHHHCEECEESGGGCGG----GTTEEEEECCS
T ss_pred HHHHHHHHHCCEEEeCchhhCcC----CCCeEEEEEcC
Confidence 67777776679999986544321 14579999986
No 63
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*
Probab=99.86 E-value=2.6e-20 Score=223.16 Aligned_cols=311 Identities=14% Similarity=0.084 Sum_probs=213.6
Q ss_pred eeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC--ceEecCCHHHHHHHHHH
Q psy13354 30 IELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA--ANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 30 i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~--~vi~~~sGs~A~~~al~ 107 (1342)
+.+.++...+++.+.+++.+.+.. . + ..........+++.+++++|.+. .+++++||++|+..++.
T Consensus 20 ~~~~~~p~~~~~~v~~a~~~~~~~---------~-~--~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~ 87 (396)
T 2ch1_A 20 IMMGPGPSNCSKRVLTAMTNTVLS---------N-F--HAELFRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLS 87 (396)
T ss_dssp BCCSSSSCCCCHHHHHHTTSCCCC---------T-T--CHHHHHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHH
T ss_pred eeecCCCCCCCHHHHHHhcccccc---------C-C--ChhHHHHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHH
Confidence 445555666777788886554311 1 1 12223445567779999999874 46677799999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
+++.+||+|+++...++++. ........|.. ++.++.++++.+|++++++.+++.++++|++++++++ ...++++
T Consensus 88 ~~~~~gd~vl~~~~~~~~~~-~~~~~~~~g~~--~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~~~~~~ 164 (396)
T 2ch1_A 88 NLLEEGDRVLIAVNGIWAER-AVEMSERYGAD--VRTIEGPPDRPFSLETLARAIELHQPKCLFLTHGDSSSGLLQPLEG 164 (396)
T ss_dssp HHCCTTCEEEEEESSHHHHH-HHHHHHHTTCE--EEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESEETTTTEECCCTT
T ss_pred HhcCCCCeEEEEcCCcccHH-HHHHHHHcCCc--eEEecCCCCCCCCHHHHHHHHHhCCCCEEEEECCCCCCceecCHHH
Confidence 99999999998886665431 12345666774 4555666678899999999998734566666665555 4448999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---------- 253 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---------- 253 (1342)
|.++|++||++||+|++|+.|... ..... .+|++++|+||+++++.| |++++++++++.+....
T Consensus 165 i~~l~~~~~~~li~Dea~~~g~~~----~~~~~~~~d~~~~s~~K~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (396)
T 2ch1_A 165 VGQICHQHDCLLIVDAVASLCGVP----FYMDKWEIDAVYTGAQKVLGAPPGITPISISPKALDVIRNRRTKSKVFYWDL 240 (396)
T ss_dssp HHHHHHHTTCEEEEECTTTBTTBC----CCTTTTTCCEEECCCC-CCCCCSSCEEEEECHHHHHHHHTCSSCCSCGGGCH
T ss_pred HHHHHHHcCCEEEEEccccccCCc----cchhhcCcCEEEEcCCccccCCCCeEEEEECHHHHHhhhhccCcccceEech
Confidence 999999999999999999865331 11111 258999999999977878 99999998887765321
Q ss_pred ------------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC---CCeEEEE
Q psy13354 254 ------------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT---KSHIILV 318 (1342)
Q Consensus 254 ------------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~---~~~~v~i 318 (1342)
..+..++++.+.+.++..++......++++..+++.++++++.+.|.+.|+++..+.. ...++++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~ 320 (396)
T 2ch1_A 241 LLLGNYWGCYDEPKRYHHTVASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDIFVKDPRHRLPTVTGI 320 (396)
T ss_dssp HHHHHHTTCSSSCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCBSSCSGGGBCTTEEEE
T ss_pred HHHHHhhhhhcccCCCCCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCCeeccCCccccCCceEEE
Confidence 0122344556666666666655444467888999999999999999988887654221 1237888
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++......++...+++++||.+.++..+. ..+++|++++.
T Consensus 321 ~~~~~~~~~~~~~~L~~~~gi~v~~g~~~~------~~~~iRi~~~~ 361 (396)
T 2ch1_A 321 MIPKGVDWWKVSQYAMNNFSLEVQGGLGPT------FGKAWRVGIMG 361 (396)
T ss_dssp ECCTTCCHHHHHHHHHHHHCBCCBCCCGGG------TTTEEEEECCG
T ss_pred EcCCCCCHHHHHHHHHHhCCEEEecCcccc------CCCEEEEECCC
Confidence 876433345667777766699998653221 24579999854
No 64
>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*
Probab=99.86 E-value=1.5e-20 Score=224.21 Aligned_cols=330 Identities=14% Similarity=0.101 Sum_probs=221.7
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la 83 (1342)
++++...+.....+..... ....+.+..+.+.+ ++.+.+++.+.+.. ... |+...+..++++ .++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~------y~~~~~~~~l~~----~la 71 (381)
T 1v2d_A 5 PRTEAAKESIFPRMSGLAQ-RLGAVNLGQGFPSNPPPPFLLEAVRRALGR--QDQ------YAPPAGLPALRE----ALA 71 (381)
T ss_dssp GGGGGC---CHHHHHHHHH-HHTCEECCCCSCSSCCCHHHHHHHHHHTTT--SCS------CCCTTCCHHHHH----HHH
T ss_pred hhhhhcCccHHHHHHHHHh-cCCeEEecCCCCCCCCCHHHHHHHHHHHHH--hcC------CCCCCCCHHHHH----HHH
Confidence 4455555444444443332 24568887776543 45688888877642 111 222233445555 777
Q ss_pred HHhCCC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC---CCCCCCHHHHH
Q psy13354 84 KIFNAE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN---KKEKIDYKKVE 159 (1342)
Q Consensus 84 ~~~g~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~---~~~~id~e~Le 159 (1342)
++++.+ +.+++++||++|+..++.+++.+||+|++....|+++ ...+...|..+. .++.+ +++.+|+++++
T Consensus 72 ~~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~~--~v~~~~~~~~~~~d~~~l~ 146 (381)
T 1v2d_A 72 EEFAVEPESVVVTSGATEALYVLLQSLVGPGDEVVVLEPFFDVY---LPDAFLAGAKAR--LVRLDLTPEGFRLDLSALE 146 (381)
T ss_dssp HHHTSCGGGEEEESSHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEEE--EEECEEETTEEECCHHHHH
T ss_pred HhcCCChhhEEEcCChHHHHHHHHHHhCCCCCEEEEcCCCchhH---HHHHHHcCCEEE--EEeCCCCCccCCcCHHHHH
Confidence 888876 4566666999999999999999999999888666554 344566677444 44544 45778999999
Q ss_pred HHHHhcCCeEEEEcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccC
Q psy13354 160 YLAKKNKPKLIIAGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSL 231 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l 231 (1342)
+.+++ ++++++++++++| +. .++++|+++|++||++||+|++|+.+.+ +....+.. ...|++++|+||++
T Consensus 147 ~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~ 224 (381)
T 1v2d_A 147 KALTP-RTRALLLNTPMNPTGLVFGERELEAIARLARAHDLFLISDEVYDELYY-GERPRRLREFAPERTFTVGSAGKRL 224 (381)
T ss_dssp TTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHT
T ss_pred HhcCc-CCEEEEECCCCCCCCCccCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHhcCCCEEEEeechhhc
Confidence 88864 4566666666555 22 2489999999999999999999986544 21111111 23689999999999
Q ss_pred CCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 232 RGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-KPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 232 ~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
|+.| ||+++++++++.+........ .+++.+.+.++..++.... .+++++.++++.++++++.+.|.+.|+++.
T Consensus 225 -~~~G~r~G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 302 (381)
T 1v2d_A 225 -EATGYRVGWIVGPKEFMPRLAGMRQWTS-FSAPTPLQAGVAEALKLARREGFYEALREGYRRRRDLLAGGLRAMGLRVY 302 (381)
T ss_dssp -TCGGGCCEEEECCTTTHHHHHHHHHHHT-SSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred -CCcccceEEEEeCHHHHHHHHHHHhhcc-cCCCcHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHHHCCCEec
Confidence 5555 999999988888765322112 2334555555555554331 447888899999999999999999888875
Q ss_pred eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. +..++++|+.++.. + +..+++++||.+.++..+.... ...+++|++++.
T Consensus 303 ~-~~~~~~~~~~~~~~--~---~~~~l~~~gi~v~~g~~~~~~~--~~~~~iRi~~~~ 352 (381)
T 1v2d_A 303 V-PEGTYFLMAELPGW--D---AFRLVEEARVALIPASAFYLED--PPKDLFRFAFCK 352 (381)
T ss_dssp C-CSBSSEEEEECTTC--C---HHHHHHHTCEECEEGGGGCSSS--CCTTEEEEECCS
T ss_pred C-CCcceEEEEecChH--h---HHHHHHhCCEEEecchHhCCCC--CCCCEEEEEeCC
Confidence 4 44567889988754 2 6667777899999875544311 114579999876
No 65
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Probab=99.86 E-value=1.6e-20 Score=223.57 Aligned_cols=315 Identities=14% Similarity=0.108 Sum_probs=217.4
Q ss_pred ccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHH
Q psy13354 26 QNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQ 100 (1342)
Q Consensus 26 ~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~ 100 (1342)
.++.|.+..+++. .+|.+.+++.+.+... ..+|+ . .+ .++++++++++.+.+|.+ +.+++++||++
T Consensus 22 g~~~idl~~~~~~~~~~~~v~~a~~~~~~~~-~~~y~------~-~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~ 92 (377)
T 3fdb_A 22 GQGVLPLWVAESDFSTCPAVLQAITDAVQRE-AFGYQ------P-DG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVR 92 (377)
T ss_dssp CTTSEECCSSCCCSCCCHHHHHHHHHHHHTT-CCSSC------C-SS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHH
T ss_pred CCCeeeecccCCCCCCCHHHHHHHHHHHHcC-CCCCC------C-CC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHH
Confidence 3567888888764 3556999988887531 11222 2 22 467787777777776633 45666669999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
|+..++.+++++||+|++..+.+++ ....+...|.. ++.++.+++ +|++++++.+++++. +++++++++| +
T Consensus 93 a~~~~~~~~~~~gd~vl~~~~~~~~---~~~~~~~~g~~--~~~~~~~~~--~d~~~l~~~l~~~~~-~v~i~~p~nptG 164 (377)
T 3fdb_A 93 GLYIAIDHFTPAQSKVIVPTPAYPP---FFHLLSATQRE--GIFIDATGG--INLHDVEKGFQAGAR-SILLCNPYNPLG 164 (377)
T ss_dssp HHHHHHHHHSCTTCCEEEEESCCTH---HHHHHHHHTCC--EEEEECTTS--CCHHHHHHHHHTTCC-EEEEESSBTTTT
T ss_pred HHHHHHHHhcCCCCEEEEcCCCcHh---HHHHHHHcCCE--EEEccCCCC--CCHHHHHHHhccCCC-EEEEeCCCCCCC
Confidence 9999999999999999987755544 44445566764 444555544 899999999987644 4444454555 2
Q ss_pred c----cCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCCC----CCcEEEecCCccCCCCCe---eEEEE-echhH
Q psy13354 180 Y----IDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPVP----FADFITSTTHKSLRGPRG---GFILM-KKKYK 246 (1342)
Q Consensus 180 ~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l~----~~Divv~S~sK~l~gp~G---G~iv~-~~~l~ 246 (1342)
. .++++|+++|++||++||+|++|+.+.+.+ ....+... ..+++++|+||++ |+.| ||+++ +++++
T Consensus 165 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~ 243 (377)
T 3fdb_A 165 MVFAPEWLNELCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAW-NIAGLKCAQIIFSNPSDA 243 (377)
T ss_dssp BCCCHHHHHHHHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTT-TCGGGCCEEEECCSHHHH
T ss_pred CCCCHHHHHHHHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhc-cCcchhheEEEeCCHHHH
Confidence 2 258888999999999999999998755433 12222111 1248899999999 6555 98776 67888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEccCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~~~~ 324 (1342)
+.+.... .+...+++.+.+.++..++... .+++++..+++.++++++.+.|++. |+.+.. +.+++++|+.++...
T Consensus 244 ~~~~~~~-~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~ 320 (377)
T 3fdb_A 244 EHWQQLS-PVIKDGASTLGLIAAEAAYRYG-TDFLNQEVAYLKNNHDFLLHEIPKRIPGAKITP-MQATYLMWIDFRDTT 320 (377)
T ss_dssp HHHHHSC-HHHHCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHSTTCEECC-CSBCSEEEEECTTSC
T ss_pred HHHHHHH-HhhcCCCCHHHHHHHHHHHhcc-HHHHHHHHHHHHHHHHHHHHHHHhhCCCceEec-CCeeEEEEEECcccC
Confidence 8887642 2223344455555555555443 3467888899999999999999985 788754 456678899988754
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.+++..+++++||.+.++..++... .+++|++++.
T Consensus 321 ~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~~Ris~~~ 357 (377)
T 3fdb_A 321 IEGSPSEFFIEKAKVAMNDGAWFGEDG----TGFCRLNFAT 357 (377)
T ss_dssp CCSCHHHHHHHHHCEECEEGGGGCGGG----TTEEEEECCS
T ss_pred CCHHHHHHHHHhCCEEecCChhccCCC----CCEEEEEeCC
Confidence 456788888888899999876544321 4679999884
No 66
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}
Probab=99.86 E-value=1.8e-20 Score=222.94 Aligned_cols=313 Identities=13% Similarity=0.075 Sum_probs=210.8
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~ 104 (1342)
....+.+++..+++.+++++.+.+.. ++ .....++.+++++++++++|.+ +.+++++||++|+..
T Consensus 19 ~~~~~~pgp~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~ 86 (376)
T 3f0h_A 19 GMLNFTVGPVMSSEEVRAIGAEQVPY----------FR--TTEFSSTMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEA 86 (376)
T ss_dssp SCEECSSSSCCCCHHHHHHHTSCCCC----------CS--SHHHHHHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHH
T ss_pred CceeecCCCCCCcHHHHHHhcCCCCC----------CC--CHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHH
Confidence 34667788888899999887654421 01 1233466677888999999987 344557789999999
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID 182 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~ 182 (1342)
++.++++|||+|++....+.++. ........|..+ +.++.+.++.+|++++++.+.+ +++++++++++++ ...+
T Consensus 87 ~~~~~~~~gd~vi~~~~~~~~~~-~~~~~~~~g~~~--~~v~~~~~~~~d~~~l~~~~~~-~~~~v~~~~~~nptG~~~~ 162 (376)
T 3f0h_A 87 VVMNCFTKKDKVLVIDGGSFGHR-FVQLCEIHEIPY--VALKLEHGKKLTKEKLYEYDNQ-NFTGLLVNVDETSTAVLYD 162 (376)
T ss_dssp HHHHHCCTTCCEEEEESSHHHHH-HHHHHHHTTCCE--EEEECCTTCCCCHHHHHTTTTS-CCCEEEEESEETTTTEECC
T ss_pred HHHhccCCCCeEEEEeCChhhHH-HHHHHHHcCCce--EEEeCCCCCCCCHHHHHHhhcc-CceEEEEecccCCcceecC
Confidence 99999999999998764332221 123345556644 4445566788999999987654 4566666554444 4558
Q ss_pred HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCc---
Q psy13354 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPG--- 256 (1342)
Q Consensus 183 l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~--- 256 (1342)
+++|+++|++||++||+|++|+.+... . ... .+|++++|+||+++|+.| |++++++++++.+.......
T Consensus 163 l~~i~~l~~~~~~~li~D~~~~~~~~~----~-~~~~~~~d~~~~s~~K~l~~~~G~g~~~~~~~~~~~~~~~~~~~~~~ 237 (376)
T 3f0h_A 163 TMMIGEFCKKNNMFFVCDCVSAFLADP----F-NMNECGADVMITGSQKVLACPPGISVIVLAPRGVERVEKSKVRTMYF 237 (376)
T ss_dssp HHHHHHHHHHTTCEEEEECTTTTTTSC----C-CHHHHTCSEEEEETTTTTCCCSSCEEEEECHHHHHHHHTCCCCCSTT
T ss_pred HHHHHHHHHHcCCEEEEEcCccccCcc----c-cccccCccEEEecCcccccCCCceEEEEECHHHHHHhhcCCCCceee
Confidence 999999999999999999998876441 1 111 268999999999966778 99999999888876532111
Q ss_pred -------------cccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 257 -------------IQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 257 -------------~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
...++.....+++..++...... +++...+++.++++++.+.|.+.|+++..+.....++.+. +.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~-~~ 316 (376)
T 3f0h_A 238 DLKDALKNQERGQTPFTPAVGILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDLPFELVSESPANGVTSVH-PT 316 (376)
T ss_dssp CHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTSSEEECCSSBBTTEEEEE-ES
T ss_pred cHHHHHhhcccCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcCCccCccccCceEEEEe-CC
Confidence 11233333334444444444333 4778889999999999999999888765432223333333 22
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.....++...+++++||.+.++..+ ...+.+|++++..++
T Consensus 317 ~~~~~~l~~~l~~~~gi~v~~g~~~------~~~~~lRis~~~~~t 356 (376)
T 3f0h_A 317 TANAYDIFLKLKDEYGIWICPNGGE------MKDTIFRVGHIGALT 356 (376)
T ss_dssp SSCHHHHHHHHHHHSSEECEECCGG------GTTTCEEEECCSSCC
T ss_pred CCCHHHHHHHHHHhCCEEEecCccc------cCCCEEEEecCCCCC
Confidence 2334566667766669999876221 124579999887655
No 67
>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}
Probab=99.86 E-value=2e-20 Score=224.27 Aligned_cols=318 Identities=13% Similarity=0.052 Sum_probs=217.0
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC----CC-ceEecCCHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA----EA-ANVQPHSGS 99 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~----~~-~vi~~~sGs 99 (1342)
++.|.+..+++.+ ++.+.+++.+.+... .+|+ ...+..++++++++++.+.+|. .+ .+++++||+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~--~~y~------~~~g~~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~ 101 (396)
T 3jtx_A 30 MEAVPLHIGEPKHPTPKVITDALTASLHEL--EKYP------LTAGLPELRQACANWLKRRYDGLTVDADNEILPVLGSR 101 (396)
T ss_dssp CCCEECSCCSCCSCCCHHHHHHHHHTGGGG--GSCC------CTTCCHHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHH
T ss_pred CCeEEeCCcCCCCCCCHHHHHHHHHHhhhc--cCCC------CCCCcHHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcH
Confidence 3568888877544 455888887766321 1222 2333458888888888888774 24 566676999
Q ss_pred HHHHHHHHHccCCC-----CEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 100 QANQAVFFSVLNPG-----DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 100 ~A~~~al~al~~pG-----D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
+|+..++.+++.+| |+|++..+.|+ .....+...|..+..+ +.+ +++.+|++++++.+++ ++++++++
T Consensus 102 ~al~~~~~~~~~~g~~~~~d~vl~~~p~~~---~~~~~~~~~g~~~~~v--~~~~~g~~~d~~~l~~~~~~-~~~~v~l~ 175 (396)
T 3jtx_A 102 EALFSFVQTVLNPVSDGIKPAIVSPNPFYQ---IYEGATLLGGGEIHFA--NCPAPSFNPDWRSISEEVWK-RTKLVFVC 175 (396)
T ss_dssp HHHHHHHHHHCCC---CCCCEEEEEESCCH---HHHHHHHHTTCEEEEE--ECCTTTCCCCGGGSCHHHHH-TEEEEEEE
T ss_pred HHHHHHHHHHhCCCCccCCCEEEEcCCCcH---hHHHHHHHcCCEEEEe--ecCCCCCccCHHHHHHhhcc-CcEEEEEE
Confidence 99999999999997 79998775544 3444556677754444 544 4557899999998887 45666665
Q ss_pred CCCCC--ccc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---------CCCcEEEecCCccCCCCCe---
Q psy13354 174 ASAYS--QYI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---------PFADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 174 ~s~~~--~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---------~~~Divv~S~sK~l~gp~G--- 236 (1342)
++++| ... ++++|+++|++||++||+||+|+.+.+......+.. ...+++++|+||++ ++.|
T Consensus 176 ~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~ 254 (396)
T 3jtx_A 176 SPNNPSGSVLDLDGWKEVFDLQDKYGFIIASDECYSEIYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRS-NVPGLRS 254 (396)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEECTTTTCCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTS-SCGGGCC
T ss_pred CCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCchHHhhhhhcccccCcEEEEecccccc-CCcccce
Confidence 66666 222 466799999999999999999986544331222211 23468899999988 5555
Q ss_pred eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 237 GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 237 G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
||+++++++++.+......+. .+++.+.+.++..++. . .+++++.++++.++++++.+.|.+. +.+. .+.+++++
T Consensus 255 G~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~a~~~~l~-~-~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~-~~~~~~~~ 329 (396)
T 3jtx_A 255 GFVAGDAELLKNFLLYRTYHG-SAMSIPVQRASIAAWD-D-EQHVIDNRRLYQEKFERVIPILQQV-FDVK-LPDASFYI 329 (396)
T ss_dssp EEEEECHHHHHHHHHHHHHHT-CCCCHHHHHHHHHHHH-C-CHHHHHHHHHHHHHHHHHHHHHTTT-SCCC-CCSSSSEE
T ss_pred EEEEeCHHHHHHHHHHHhhcc-cCCCHHHHHHHHHHhC-C-HHHHHHHHHHHHHHHHHHHHHHHhc-CCcc-CCCeeEEE
Confidence 999999998888876433222 2344555555554443 2 3477888899999999999999875 3332 34567899
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccCCCCC--CCccccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSIPNDP--EKPYFTSGIRLGSSA 365 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~--~~~~~~~~lRi~~~~ 365 (1342)
|+.++. ..+.++...+++++||.+.++..++.. ......+++|++++.
T Consensus 330 ~~~~~~-~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~~~~~~~iRis~~~ 379 (396)
T 3jtx_A 330 WLKVPD-GDDLAFARNLWQKAAIQVLPGRFLARDTEQGNPGEGYVRIALVA 379 (396)
T ss_dssp EEECTT-SCHHHHHHHHHHHHCEECEEGGGGCCCCTTCCTTTTEEEEECCS
T ss_pred EEECCC-CCHHHHHHHHHHHCCEEEeCChHhCCcccccCCCCCeEEEEEcC
Confidence 999876 335677777878789999987665542 001124679999875
No 68
>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}
Probab=99.86 E-value=5.4e-20 Score=217.00 Aligned_cols=301 Identities=13% Similarity=0.100 Sum_probs=209.9
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.+.+..+++.+ ++.+++++.+.+.. ..+|+ ..+..+ +++.+++++|.+ +.+++++||++|+.
T Consensus 16 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~-------~~~~~~----l~~~la~~~~~~~~~i~~~~g~~~a~~ 82 (354)
T 3ly1_A 16 DNPIRINFNENPLGMSPKAQAAARDAVVK--ANRYA-------KNEILM----LGNKLAAHHQVEAPSILLTAGSSEGIR 82 (354)
T ss_dssp SSCEECSSCCCSSCCCHHHHHHHHHTGGG--TTSCC-------HHHHHH----HHHHHHHHTTSCGGGEEEESHHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHhh--CcCCC-------CCchHH----HHHHHHHHhCCChHHEEEeCChHHHHH
Confidence 3568888887664 45588888877642 11221 223334 555899999975 55666658899999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-cCCeEEEEcCCCCC--cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-NKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-~~~~liv~~~s~~~--~~ 180 (1342)
.++.+++++||+|++..+.++ .....+...|. +++.++.++++.+|++++++.+++ .++++++++++++| ..
T Consensus 83 ~~~~~l~~~gd~vl~~~~~~~---~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~v~l~~p~nptG~~ 157 (354)
T 3ly1_A 83 AAIEAYASLEAQLVIPELTYG---DGEHFAKIAGM--KVTKVKMLDNWAFDIEGLKAAVAAYSGPSIVYLVNPNNPTGTI 157 (354)
T ss_dssp HHHHHHCCTTCEEEEESSSCT---HHHHHHHHTTC--EEEEECCCTTSCCCHHHHHHHHHTCSSCEEEEEESSCTTTCCC
T ss_pred HHHHHHhCCCCeEEECCCCch---HHHHHHHHcCC--EEEEecCCCCCCCCHHHHHHHhccCCCCCEEEEeCCCCCcCCC
Confidence 999999999999997775544 44455566676 556667776788999999999984 45677776666666 44
Q ss_pred cCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCCccCCCCCe---eEEEEechhHHHH
Q psy13354 181 IDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTHKSLRGPRG---GFILMKKKYKKII 249 (1342)
Q Consensus 181 ~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l 249 (1342)
.+.++|.++|+. ||++||+|++|+.+... +....... ..+++++|+||++ |+.| ||+++++++++.+
T Consensus 158 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~ 235 (354)
T 3ly1_A 158 TPADVIEPWIASKPANTMFIVDEAYAEFVND-PRFRSISPMITQGAENIILLKTFSKIH-AMAGMRVGYAVAHPTVIALM 235 (354)
T ss_dssp CCHHHHHHHHHTCCTTEEEEEECTTGGGCCC-TTCCCSHHHHHTTCSSEEEEEESSSTT-CCGGGCCEEEECCHHHHHHH
T ss_pred cCHHHHHHHHHhCCCCeEEEEeccHHHhccc-cccCCHHHHhhhcCCCEEEEeeChhhc-cChhhhheeeecCHHHHHHH
Confidence 477777777776 99999999999855432 22222211 2358899999999 6555 9999999999998
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
...... .+++.+.+.++..++.. . .++++.++++.++++++.+.|.+.|+.+. +..++++|+.++. ...++
T Consensus 236 ~~~~~~---~~~~~~~~~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~--~~~~~ 306 (354)
T 3ly1_A 236 GRYVAG---EKINFSGVDAALASMND-S-AFITYSKKSNDVSRQILLKALEDLKLPYL--PSEGNFVFHQLVV--PLKDY 306 (354)
T ss_dssp GGGTTC---SCCCHHHHHHHHHHTTC-H-HHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCCSSEEEEECSS--CHHHH
T ss_pred HHhcCC---CCCCHHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHHHHHHHCCCeEC--CCCceEEEEECCC--CHHHH
Confidence 875444 23445555555444432 2 46778889999999999999998887764 3456778998875 23455
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
...+. ++||.+. ..+++. .+++|++++
T Consensus 307 ~~~l~-~~gi~v~-g~~~~~------~~~iRis~~ 333 (354)
T 3ly1_A 307 QTHMA-DAGVLIG-RAFPPA------DNWCRISLG 333 (354)
T ss_dssp HHHHH-HTTEECC-CCCTTC------TTEEEEECC
T ss_pred HHHHH-HCCEEEe-ecCCCC------CCEEEEEcC
Confidence 55555 5699988 444331 457999976
No 69
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Probab=99.86 E-value=1.9e-20 Score=225.02 Aligned_cols=307 Identities=20% Similarity=0.221 Sum_probs=205.5
Q ss_pred cHHHHHHHhHHHHhccccCCCC-CCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--CCCCEE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPG-KRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL--NPGDTI 116 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~-~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~--~pGD~V 116 (1342)
+|.+.+++.+.+.. +..+... ...|+......++++ .+++++|.++.++++ +|+.++..++.++. .|||+|
T Consensus 62 ~p~v~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~----~la~~~~~~~~i~~~-sG~~a~~~~~~~l~~~~~gd~V 135 (401)
T 2bwn_A 62 HPVVLAAMHEALEA-VGAGSGGTRNISGTTAYHRRLEA----EIAGLHQKEAALVFS-SAYNANDATLSTLRVLFPGLII 135 (401)
T ss_dssp CHHHHHHHHHHHHH-HCSCCCSBTTTBCCBHHHHHHHH----HHHHHTTCSEEEEES-CHHHHHHHHHHHHHHHSTTCEE
T ss_pred CHHHHHHHHHHHHH-cCCCCCCcCcccCChHHHHHHHH----HHHHHhCCCcEEEEC-CcHHHHHHHHHHHhcCCCCCEE
Confidence 45699998888753 3222111 112333444555555 888899988777776 88888888877763 599999
Q ss_pred EEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC--cccCHHHHHHHHH
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK---NKPKLIIAGASAYS--QYIDFERFYHIAK 191 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~---~~~~liv~~~s~~~--~~~~l~~I~~la~ 191 (1342)
++....|+ +....+...|. +++.++.+ |++++++.+.. .+++++++++++++ ...++++|+++|+
T Consensus 136 l~~~~~~~---~~~~~~~~~g~--~~~~v~~~-----d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~l~~i~~l~~ 205 (401)
T 2bwn_A 136 YSDSLNHA---SMIEGIKRNAG--PKRIFRHN-----DVAHLRELIAADDPAAPKLIAFESVYSMDGDFGPIKEICDIAE 205 (401)
T ss_dssp EEETTCCH---HHHHHHHHSCC--CEEEECTT-----CHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCCHHHHHHHHH
T ss_pred EECchhhH---HHHHHHHHcCC--eEEEEcCC-----CHHHHHHHHHhhccCCceEEEEecCcCCCCCcCCHHHHHHHHH
Confidence 97775544 44444556676 44445554 78999998874 34677777666655 4559999999999
Q ss_pred HcCCEEEEEcccchhhhhc-CCC----CCCCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCcccc-CCcHHH
Q psy13354 192 NINSYFMVDMAHYAGLIAA-GEY----PNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQG-GPLMHV 265 (1342)
Q Consensus 192 ~~gi~LIvDea~~~g~~~~-~~~----~~~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~-~~~~~~ 265 (1342)
+||++||+|++|+.|.++. +.. ....+..|++++|+||++ |+.|||+++++++++.+.....++.++ +.+...
T Consensus 206 ~~~~~li~Dea~~~g~~~~~g~~~~~~~~~~~~~~i~~~s~sK~~-~~~GG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 284 (401)
T 2bwn_A 206 EFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY-GVFGGYIAASARMVDAVRSYAPGFIFSTSLPPAI 284 (401)
T ss_dssp HHTCEEEEECTTTTTTSSTTSCCHHHHHTCGGGCSEEEEESSSTT-CSCCEEEEECHHHHHHHHHHCHHHHTSBCCCHHH
T ss_pred HcCCEEEEeccccccccCCCCceeeeccCccccCcEEEeechhhc-cCCCCEEecCHHHHHHHHHhCcCceecCCCCHHH
Confidence 9999999999999776532 110 011122589999999999 667899999998888776432222221 222344
Q ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeecc
Q psy13354 266 IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 266 ~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
++++..++......++++.++++.++++++.+.|.+.|+++.. +.++++|+.++......++...+++++||.+.+..
T Consensus 285 ~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~~~~gi~v~~~~ 362 (401)
T 2bwn_A 285 AAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPIID--HGSHIVPVVIGDPVHTKAVSDMLLSDYGVYVQPIN 362 (401)
T ss_dssp HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCBCC--CSSSCEEEECCCHHHHHHHHHHHHHHHCEECCEEC
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCCCcccC--CCCCeEEEEeCChHHHHHHHHHHHhcCCEEEeecC
Confidence 4444444443333235778899999999999999988877643 23457888876422234566667656699999877
Q ss_pred CCCCCCCcccccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.|+.+.+ .+++|++++..++
T Consensus 363 ~~~~~~~---~~~iRis~~~~~t 382 (401)
T 2bwn_A 363 FPTVPRG---TERLRFTPSPVHD 382 (401)
T ss_dssp TTTSCTT---CCEEEECCCTTSC
T ss_pred CCCCCCC---CceEEEEeeCCCC
Confidence 6655422 3579999987655
No 70
>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0
Probab=99.86 E-value=7.2e-20 Score=217.19 Aligned_cols=305 Identities=13% Similarity=0.116 Sum_probs=209.5
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQAN 102 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~ 102 (1342)
++.|.|..+++.+ ++.+.+++.+.+......+|+. ....++++ .+++++|. + +.+++++||++|+
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~~-------~~~~~l~~----~la~~~g~~~~~~i~~~~g~t~a~ 98 (367)
T 3euc_A 30 HGLVKLDAMENPYRLPPALRSELAARLGEVALNRYPV-------PSSEALRA----KLKEVMQVPAGMEVLLGNGSDEII 98 (367)
T ss_dssp TTCEECCSSCCCCCCCHHHHHHHHHHHHHHHTTCSCC-------CCHHHHHH----HHHHHHTCCTTCEEEEEEHHHHHH
T ss_pred CCeeEccCCCCCCCCCHHHHHHHHHHhhhhhhhcCCC-------CcHHHHHH----HHHHHhCCCCcceEEEcCCHHHHH
Confidence 3558888888764 5569999888875322222221 23445555 88888898 3 4556665889999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY- 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~- 180 (1342)
..++.+++++||+|++....++++. ..+...|. +++.++.++++.+|++++++.+++.++++++++++++| +.
T Consensus 99 ~~~~~~~~~~gd~Vl~~~~~~~~~~---~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~nptG~~ 173 (367)
T 3euc_A 99 SMLALAAARPGAKVMAPVPGFVMYA---MSAQFAGL--EFVGVPLRADFTLDRGAMLAAMAEHQPAIVYLAYPNNPTGNL 173 (367)
T ss_dssp HHHHHHTCCTTCEEEEEESCSCCSC---HHHHTTTC--EEEEEECCTTSCCCHHHHHHHHHHHCCSEEEEESSCTTTCCC
T ss_pred HHHHHHHcCCCCEEEEcCCCHHHHH---HHHHHcCC--eEEEecCCCCCCCCHHHHHHHhhccCCCEEEEcCCCCCCCCC
Confidence 9999999999999998876665543 33455666 55566767788899999999998755666666566665 22
Q ss_pred ---cCHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCC-CCCeeEEEEechhHHHHhhc
Q psy13354 181 ---IDFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLR-GPRGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 181 ---~~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~-gp~GG~iv~~~~l~~~l~~~ 252 (1342)
.++++|+++|++| |+++|+|++|+.... ........ ..+++++|+||+.. |...||+++++++++.+...
T Consensus 174 ~~~~~l~~i~~~~~~~~~~~~li~De~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~~~G~r~G~~~~~~~~~~~~~~~ 251 (367)
T 3euc_A 174 FDAADMEAIVRAAQGSVCRSLVVVDEAYQPFAQ--ESWMSRLTDFGNLLVMRTVSKLGLAGIRLGYVAGDPQWLEQLDKV 251 (367)
T ss_dssp CCHHHHHHHHHHTBTTSCBCEEEEECTTCCSSS--CCSGGGGGTCTTEEEEEECCCTTSCSCCEEEEEECHHHHHHHGGG
T ss_pred CCHHHHHHHHHhhhhcCCCcEEEEeCcchhhcc--cchHHHHhhCCCEEEEecchhhcccccCceeeeeCHHHHHHHHHh
Confidence 3688999999999 999999999875321 11111111 23588999999931 12229999999999888775
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
...+ +++...+.++..++.. .+++++..+++.++++++.+.|.+. |+.+. +..++++|+.++ ...++..
T Consensus 252 ~~~~---~~~~~~~~a~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~--~~~~~~~~~~~~---~~~~l~~ 321 (367)
T 3euc_A 252 RPPY---NVNVLTEATALFALEH--VAVLDEQAAQLRAERSRVAEGMAAHGGVTVF--PSAANFLLARVP---DAAQTFD 321 (367)
T ss_dssp CCSS---CCCHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHTSTTCEEC--CCSSSEEEEECS---CHHHHHH
T ss_pred CCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCcEEC--CCCCeEEEEECC---CHHHHHH
Confidence 4433 2334455554444433 3467888899999999999999987 88753 356778888886 2334444
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
. +.++||.+.++..+.. ...+++|++++
T Consensus 322 ~-l~~~gi~v~~~~~~~~----~~~~~iRis~~ 349 (367)
T 3euc_A 322 R-LLARKVLIKNVSKMHP----LLANCLRVTVS 349 (367)
T ss_dssp H-HHTTTEECEECGGGCG----GGTTEEEEECC
T ss_pred H-HHHCCeEEEECCccCC----CCCCEEEEecC
Confidence 4 5667999997654321 12467999976
No 71
>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0
Probab=99.86 E-value=1.1e-19 Score=215.24 Aligned_cols=300 Identities=13% Similarity=0.080 Sum_probs=209.9
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.|.+..+++++ ++.+.+++.+.+.. + .+|+ .....++ ++.+++++|.+ +.+++++||++|+.
T Consensus 32 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~-~~y~-------~~~~~~l----r~~la~~~~~~~~~v~~~~g~t~a~~ 98 (363)
T 3ffh_A 32 TKITKLSSNENPLGTSKKVAAIQANSSVE-T-EIYP-------DGWASSL----RKEVADFYQLEEEELIFTAGVDELIE 98 (363)
T ss_dssp SCCEECSSCSCTTCCCHHHHHHHHTCBSC-C-CBC-----------CHHH----HHHHHHHHTCCGGGEEEESSHHHHHH
T ss_pred CceEEccCCCCCCCCCHHHHHHHHHHHHH-h-hcCC-------CcchHHH----HHHHHHHhCCChhhEEEeCCHHHHHH
Confidence 3568888887765 45588887765421 1 1121 1222344 44888888875 55666669999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|++....++ .....+...|. +++.++.++++.+|++++++.+++ +++++++++++++ ...
T Consensus 99 ~~~~~~~~~gd~vl~~~~~~~---~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~ 172 (363)
T 3ffh_A 99 LLTRVLLDTTTNTVMATPTFV---QYRQNALIEGA--EVREIPLLQDGEHDLEGMLNAIDE-KTTIVWICNPNNPTGNYI 172 (363)
T ss_dssp HHHHHHCSTTCEEEEEESSCH---HHHHHHHHHTC--EEEEEECCTTSCCCHHHHHHHCCT-TEEEEEEESSCTTTCCCC
T ss_pred HHHHHHccCCCEEEEcCCChH---HHHHHHHHcCC--EEEEecCCCCCCcCHHHHHHhccc-CCCEEEEeCCCCCcCCCc
Confidence 999999999999998775444 44445566676 455556666788999999999875 4566666666665 445
Q ss_pred CHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHHHHhh
Q psy13354 182 DFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKKIINS 251 (1342)
Q Consensus 182 ~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~ 251 (1342)
+.++|.++|+.+ |+++|+|++|+.+.. +....... ..+++++|+||++ |+.| ||+++++++++.+..
T Consensus 173 ~~~~l~~l~~~~~~~~~li~De~~~~~~~--~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~l~~ 249 (363)
T 3ffh_A 173 ELADIQAFLDRVPSDVLVVLDEAYIEYVT--PQPEKHEKLVRTYKNLIITRTFSKIY-GLASARVGYGIADKEIIRQLNI 249 (363)
T ss_dssp CHHHHHHHHTTSCTTSEEEEECTTGGGCS--SCCCCCGGGGGTCTTEEEEEESSSTT-CCSSCCCEEEEECHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCcEEEEeCchHhhcC--ccccCHHHHhhcCCCEEEEeechhhh-cCchhceeeeecCHHHHHHHHH
Confidence 888998888887 999999999986544 22222221 1347889999999 6555 999999999998887
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-CCcEEeeCCCCCeEEEEEccCCCCCHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-RGIRIVSGGTKSHIILVDLRNKKITGKIA 330 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~g~~~~~~~~~~~~v~i~~~~~~~~~~~~ 330 (1342)
...++ +++...+.++..++. .. +++++.++++.++++++.+.|.+ .|+.+.. ..++++|+.++. ...++.
T Consensus 250 ~~~~~---~~~~~~~~~~~~~l~-~~-~~~~~~~~~~~~~~~~l~~~l~~~~g~~~~~--~~~~~~~~~~~~--~~~~~~ 320 (363)
T 3ffh_A 250 VRPPF---NTTSIGQKLAIEAIK-DQ-AFIGECRTSNANGIKQYEAFAKRFEKVKLYP--ANGNFVLIDLGI--EAGTIF 320 (363)
T ss_dssp TCCSC---CCBHHHHHHHHHHHH-CH-HHHHHHHHHHHHHHHHHHHHHHHCTTCEECC--CCSSEEEEECSS--CHHHHH
T ss_pred hCCCC---CCCHHHHHHHHHHhc-CH-HHHHHHHHHHHHHHHHHHHHHhhCCCceECC--CCCeEEEEECCC--CHHHHH
Confidence 54432 334445555554443 22 46788889999999999999999 7888743 456788998875 344555
Q ss_pred HHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 331 ~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
..+. ++||.+.++..++. .+++|++++
T Consensus 321 ~~l~-~~gi~v~~g~~~~~------~~~iRis~~ 347 (363)
T 3ffh_A 321 SYLE-KNGYITRSGAALGF------PTAVRITIG 347 (363)
T ss_dssp HHHH-HTTEECEETTTTTC------TTEEEEECC
T ss_pred HHHH-HCCeEEEeCccCCC------CCeEEEECC
Confidence 5555 56999998766543 347999977
No 72
>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}
Probab=99.86 E-value=2.4e-20 Score=227.75 Aligned_cols=317 Identities=15% Similarity=0.052 Sum_probs=207.9
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh--CCC-CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF--NAE-AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~--g~~-~~vi~~~sGs~A 101 (1342)
.+.|.|..+++. .+|.+.+++.+.+.. +.. ......|+...+..++++++++++. . +.+ +.+++++|++++
T Consensus 69 ~~~i~l~~g~~~~~~~~~v~~a~~~~~~~-~~~-~~~~~~y~~~~g~~~lr~~ia~~~~--~g~~~~~~~i~~t~G~~~a 144 (449)
T 3qgu_A 69 AKIISLGIGDTTEPLPKYIADAMAKAAAG-LAT-REGYSGYGAEQGQGALREAVASTFY--GHAGRAADEIFISDGSKCD 144 (449)
T ss_dssp CCCEECSSCCCCCCCCHHHHHHHHHHHHG-GGG-SCCCCCSTTTTCCHHHHHHHHHHHH--TTTTCCGGGEEEESCHHHH
T ss_pred CCEEEeeCCCCCCCCCHHHHHHHHHHHHh-hcc-ccCCCCCCCCCCcHHHHHHHHHHHH--cCCCCCHHHEEEccCHHHH
Confidence 356888777643 556699998888853 221 1112234444556678885555544 2 333 566677688889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCce--------eEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEE
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW--------FNSICYGLNK--KEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~--------~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv 171 (1342)
+..+ .+++++||+|++..+.|+++. ..+...|.. .+++.+++++ .+..|++.+ .++++++
T Consensus 145 l~~~-~~l~~~gd~Vl~~~p~~~~~~---~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~v~ 214 (449)
T 3qgu_A 145 IARI-QMMFGSKPTVAVQDPSYPVYV---DTSVMMGMTGDHNGTGFDGIEYMVCNPDNHFFPDLSKA------KRTDIIF 214 (449)
T ss_dssp HHHH-HHHHCSSSCEEEEESCCTHHH---HHHHHHTCSCCBCSSSBTTEEEEECCGGGTTCCCGGGC------CCCSEEE
T ss_pred HHHH-HHHhCCCCEEEEcCCCChhHH---HHHHHcCCcccccccccceeEEEecccccCCcCChhHc------CCCCEEE
Confidence 9888 888999999998876665543 334444543 1144445543 444454322 3456666
Q ss_pred EcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCccCCCCCe---eE
Q psy13354 172 AGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHKSLRGPRG---GF 238 (1342)
Q Consensus 172 ~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK~l~gp~G---G~ 238 (1342)
+++++|| +. .++++|+++|++||++||+||+|+.+.+.+....... ...+++++|+||++ |+.| ||
T Consensus 215 l~~p~NPtG~~~~~~~l~~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~ 293 (449)
T 3qgu_A 215 FCSPNNPTGAAATRAQLTELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYA-GFTGVRLGW 293 (449)
T ss_dssp EESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGG-TCTTCCCEE
T ss_pred EeCCCCCCCCcCCHHHHHHHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhc-CCccceeEE
Confidence 6666666 22 2589999999999999999999987554332221111 12468899999999 6555 99
Q ss_pred EEEechhHH--------HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC
Q psy13354 239 ILMKKKYKK--------IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG 310 (1342)
Q Consensus 239 iv~~~~l~~--------~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~ 310 (1342)
+++++++++ .+... ....+++++.+.+.++..++.....++.++.++++.++++++.+.|.+.|+.+.. +
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~ 371 (449)
T 3qgu_A 294 TVVPKALKYANGEPVHADWNRV-MTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEMGFSVYG-G 371 (449)
T ss_dssp EECCTTCBCTTSCBHHHHHHHH-HHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-S
T ss_pred EecCHHHHhhhhhhHHHHHHHH-hhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHCCCeeeC-C
Confidence 999987654 22221 1223334456666666555544222467788999999999999999999988754 4
Q ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 311 TKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 311 ~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+++++|+.++ ...+.+++..+++++||.+.++..++.. +.+++|+++..
T Consensus 372 ~~~~~~~~~~~-~~~~~~~~~~l~~~~gI~v~pg~~f~~~----~~~~iRis~~~ 421 (449)
T 3qgu_A 372 DDAPYIWVGFP-GKPSWDVFAEILERCNIVTTPGSGYGPA----GEGFVRASAFG 421 (449)
T ss_dssp SSSSEEEEECT-TSCHHHHHHHHHHHHCEECEEGGGGCGG----GTTEEEEECCS
T ss_pred CCeeEEEEECC-CCCHHHHHHHHHHHCCEEEecchHhCCC----CCCeEEEEecC
Confidence 56889999998 3345677888888789999987655432 24679998644
No 73
>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*
Probab=99.86 E-value=5.9e-20 Score=222.86 Aligned_cols=348 Identities=12% Similarity=0.041 Sum_probs=230.9
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la 83 (1342)
+++...++..+..+..... ....|.+..+.+. .++.+.+++.+.+.. ... ....|+...+..++++++++++.
T Consensus 17 ~~~~~~~~~~~~~~~~~~~-~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~---~~~~y~~~~g~~~l~~~la~~l~ 91 (429)
T 1yiz_A 17 KRYQGSTKSVWVEYIQLAA-QYKPLNLGQGFPDYHAPKYALNALAAAANS-PDP---LANQYTRGFGHPRLVQALSKLYS 91 (429)
T ss_dssp SSCCCCTTCHHHHHHHHHH-HHCCEECCSSSCSSCCCHHHHHHHHHHHTC-SCG---GGGSCCCSSCCHHHHHHHHHHHH
T ss_pred HHhhhCCchHHHHHHHHhc-cCCEEEecCCCCCCCCCHHHHHHHHHHHhc-ccc---CccCCCCCCCcHHHHHHHHHHHH
Confidence 4555555555555544322 3456777777543 446688998887742 100 11123333445688888888888
Q ss_pred HHhCCC---C-ceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--------CC
Q psy13354 84 KIFNAE---A-ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--------KE 151 (1342)
Q Consensus 84 ~~~g~~---~-~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--------~~ 151 (1342)
+.+|.+ + .+++++||++|+..++.+++.+||+|++....++++ ...+...|..+..++++.+. ++
T Consensus 92 ~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~~~~gd~Vl~~~p~y~~~---~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 168 (429)
T 1yiz_A 92 QLVDRTINPMTEVLVTVGAYEALYATIQGHVDEGDEVIIIEPFFDCY---EPMVKAAGGIPRFIPLKPNKTGGTISSADW 168 (429)
T ss_dssp HHHTSCCCTTTSEEEESHHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEEEEEECBCCCSSSSEEGGGC
T ss_pred HHhCCCCCCcCCEEEecChHHHHHHHHHHhcCCCCEEEEcCCCchhH---HHHHHHcCCEEEEEeCCcccccccccccCc
Confidence 777742 4 667776889999999999999999999887655543 34445667644444433221 56
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC-ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCc
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS-QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFAD 221 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~-~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~D 221 (1342)
.+|++.+++.+++ ++++++++++++| +.. ++++|+++|++||++||+||+|+.+.+.+..+.+. + ...|
T Consensus 169 ~~d~~~l~~~l~~-~~~~v~~~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~ 247 (429)
T 1yiz_A 169 VLDNNELEALFNE-KTKMIIINTPHNPLGKVMDRAELEVVANLCKKWNVLCVSDEVYEHMVFEPFEHIRICTLPGMWERT 247 (429)
T ss_dssp BCCHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBCTTSCCCCGGGSTTTGGGE
T ss_pred ccCHHHHHHHhcc-CceEEEECCCCCCCCccCCHHHHHHHHHHHHHcCcEEEEeccccccccCCCCCcChhhccCCcCce
Confidence 7899999998864 4566666566655 222 59999999999999999999998654432222211 1 1258
Q ss_pred EEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh----c--cchHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV----L--KPDFKIYQKQVVKNA 292 (1342)
Q Consensus 222 ivv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~----l--~~~~~~~~~~l~~~a 292 (1342)
++++|+||++ |+.| ||+++++++++.+........+ +.+.+.+.++..++... . ..++++.++++.+++
T Consensus 248 ~~~~s~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (429)
T 1yiz_A 248 ITIGSAGKTF-SLTGWKIGWAYGPEALLKNLQMVHQNCVY-TCATPIQEAIAVGFETELKRLKSPECYFNSISGELMAKR 325 (429)
T ss_dssp EEEEEHHHHH-TCGGGCCEEEESCHHHHHHHHHHHHTTTC-CCCHHHHHHHHHHHHHHHTTTTSTTSHHHHHHHHHHHHH
T ss_pred EEEecchhcc-CCCCcceEEEEeCHHHHHHHHHHHhhccc-CCChHHHHHHHHHHhcccccccchHHHHHHHHHHHHHHH
Confidence 9999999999 6566 9999999988887654322222 23455555555555441 2 446888889999999
Q ss_pred HHHHHHHHhCCcEEeeCCCCCeEEEEEccCC------------CCCHHHHHHHHHHCCceeeeccCCCCCCC-ccccccc
Q psy13354 293 KILSKILDQRGIRIVSGGTKSHIILVDLRNK------------KITGKIAESILESANIICNKNSIPNDPEK-PYFTSGI 359 (1342)
Q Consensus 293 ~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~------------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~~~~~l 359 (1342)
+++.+.|.+.|+.+.. +..++++|++++.. ..+.+++..+++++||.+.++..+..... ....+++
T Consensus 326 ~~l~~~L~~~g~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gv~v~~g~~f~~~~~~~~~~~~i 404 (429)
T 1yiz_A 326 DYMASFLAEVGMNPTV-PQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKSVGLQGIPPSAFYSEPNKHLGEDFV 404 (429)
T ss_dssp HHHHHHHHHHTCEEEE-CSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHHHHHTSEECBCGGGGSCGGGGGGTTTEE
T ss_pred HHHHHHHHhCCCcccC-CCcceEEEEEcccccccccccccccCCCHHHHHHHHHHhCCEEEeCchHhCCCcccCCCCCeE
Confidence 9999999988888754 45678999998753 12345667777678999987643332110 0013579
Q ss_pred cccccc
Q psy13354 360 RLGSSA 365 (1342)
Q Consensus 360 Ri~~~~ 365 (1342)
|++++.
T Consensus 405 Ris~~~ 410 (429)
T 1yiz_A 405 RYCFFK 410 (429)
T ss_dssp EEECCS
T ss_pred EEEecC
Confidence 999873
No 74
>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*
Probab=99.86 E-value=3.8e-20 Score=225.84 Aligned_cols=323 Identities=12% Similarity=0.048 Sum_probs=215.3
Q ss_pred cCceeeeecCC---CCcH-HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--CCceEecCCHHH
Q psy13354 27 NNNIELIASEN---YTSL-AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--EAANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n---~l~~-~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~~~vi~~~sGs~ 100 (1342)
.+.|.|..+.. ..++ .+.+++.+.+...... ...|+...+..++++++++++.+.+|. .+.+++++||++
T Consensus 76 ~~~i~l~~g~p~~~~~p~~~v~~a~~~~l~~~~~~----~~~Y~~~~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~ 151 (448)
T 3aow_A 76 SDIISLAGGLPNPKTFPKEIIRDILVEIMEKYADK----ALQYGTTKGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQ 151 (448)
T ss_dssp SSSEECCCCCCCGGGSCHHHHHHHHHHHHHHSHHH----HHSCCCTTCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHH
T ss_pred CCcEeCCCCCCCchhCCHHHHHHHHHHHHHhhhHH----HhCCCCCCCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHH
Confidence 45677766542 2233 4888877776431100 011333344568888777777666687 355666669999
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHH----h-cCCeEEE-EcC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAK----K-NKPKLII-AGA 174 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~----~-~~~~liv-~~~ 174 (1342)
|+..++.+++++||+|++..+.|++ ....+...|.. ++.++.++++ +|++++++.++ + .++++++ +++
T Consensus 152 al~~~~~~l~~~Gd~Vlv~~p~y~~---~~~~~~~~g~~--~~~v~~~~~g-~d~~~L~~~l~~~~~~~~~~k~v~~~~~ 225 (448)
T 3aow_A 152 ALDLIGRVFLNPGDIVVVEAPTYLA---ALQAFNFYEPQ--YIQIPLDDEG-MKVEILEEKLKELKSQGKKVKVVYTVPT 225 (448)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCCHH---HHHHHHTTCCE--EEEEEEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHHHHHHHcCCCCEEEEeCCChHH---HHHHHHHcCCE--EEEeccCCCC-CCHHHHHHHHhhhhccCCCCeEEEECCC
Confidence 9999999999999999987755543 44445566764 4445555444 89999999987 4 2567764 455
Q ss_pred CCCC-c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC----CCcEEEecCCccCCCCCe---eEEEEe
Q psy13354 175 SAYS-Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP----FADFITSTTHKSLRGPRG---GFILMK 242 (1342)
Q Consensus 175 s~~~-~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~----~~Divv~S~sK~l~gp~G---G~iv~~ 242 (1342)
++|| + .. ++++|+++|++||++||+||+|+.+.+.+....+... ..+++++||||++ + .| ||++++
T Consensus 226 ~~NPtG~~~~~~~l~~i~~la~~~~~~lI~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~-~-~GlriG~v~~~ 303 (448)
T 3aow_A 226 FQNPAGVTMNEDRRKYLLELASEYDFIVVEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKIL-A-PGFRIGWMVGD 303 (448)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTT-C-GGGCCEEEEEC
T ss_pred CCCCcCCCCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhc-c-ccccEEEEEeC
Confidence 5555 2 22 4789999999999999999999876553322222211 2468899999999 5 55 999999
Q ss_pred chhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC---CcEEeeCCCCCeEEEE
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR---GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~---g~~~~~~~~~~~~v~i 318 (1342)
+++++.+......+.++ ++...+.++..++... ...+++..++.+.++++++.+.|.+. |+.+.. +.+++++|+
T Consensus 304 ~~l~~~l~~~~~~~~~~-~~~~~q~a~~~~L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-p~~g~~~~v 381 (448)
T 3aow_A 304 PGIIRKMEIAKQSTDLC-TNVFGQVVAWRYVDGGYLEKHIPEIRKFYKPRRDAMLEALEEFMPEGVKWTK-PEGGMFIWV 381 (448)
T ss_dssp HHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCEECC-CSBSSEEEE
T ss_pred HHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeEEeC-CCccEEEEE
Confidence 99988887643333333 3445555554444332 13367777888889999999999874 677643 456789999
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
.++....+.+++..++++ ||.+.++..+..... ..+++|++++..
T Consensus 382 ~~~~~~~~~~l~~~l~~~-gV~v~pg~~f~~~~~--~~~~iRls~~~~ 426 (448)
T 3aow_A 382 TLPDGIDSKKMLERAIKK-GVAYVPGEAFYAHRD--VKNTMRLNFTYV 426 (448)
T ss_dssp ECSTTCCHHHHHHHHHHT-TEECEEGGGGSTTCC--CCSEEEEECSSS
T ss_pred EcCCCCCHHHHHHHHHHC-CcEEEcchhhcCCCC--CCCEEEEEeCCC
Confidence 997644455677777766 999998754432210 145799998763
No 75
>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3
Probab=99.86 E-value=1e-19 Score=219.68 Aligned_cols=329 Identities=16% Similarity=0.158 Sum_probs=214.8
Q ss_pred ceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHHHHH
Q psy13354 29 NIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~~~a 105 (1342)
.+.|..+. +..++.+.+++.+.+.+.. +.+....+............+++.+++++|. + +.+++++||++|+..+
T Consensus 29 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~y~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~ 106 (420)
T 1t3i_A 29 LVYLDNAATSQKPRAVLEKLMHYYENDN--ANVHRGAHQLSVRATDAYEAVRNKVAKFINARSPREIVYTRNATEAINLV 106 (420)
T ss_dssp CEECBTTTCCCCCHHHHHHHHHHHHHTC--CCC--CCSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhcc--CCCCcccchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHH
Confidence 46666554 4566779999888875322 1221111111111123344566799999998 3 5566666999999999
Q ss_pred HHHc----cCCCCEEEEeeccCCccchh-hHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 106 FFSV----LNPGDTIMGMSLQEGGHLTH-GMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 106 l~al----~~pGD~Vlv~~~~~~~~~s~-~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+.++ +.+||+|+++...|++.... .......|. +++.++.++++.+|++++++++++ ++++|++++++++
T Consensus 107 ~~~~~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG 183 (420)
T 1t3i_A 107 AYSWGMNNLKAGDEIITTVMEHHSNLVPWQMVAAKTGA--VLKFVQLDEQESFDLEHFKTLLSE-KTKLVTVVHISNTLG 183 (420)
T ss_dssp HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHCC--EEEEECBCTTSSBCHHHHHHHCCT-TEEEEEEESBCTTTC
T ss_pred HHHhhhcccCCCCEEEECcchhHHHHHHHHHHHHhcCc--EEEEeccCCCCCcCHHHHHHhhCC-CceEEEEeCCccccc
Confidence 9999 89999999888776654322 233345566 455556667788999999998875 4566666666555
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCc
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~ 256 (1342)
...++++|.++|++||++||+|++|+.|... ..... ..|++++|+||.+ |+.| |++++++++++.+......+
T Consensus 184 ~~~~l~~i~~l~~~~~~~li~D~a~~~~~~~----~~~~~~~~di~~~s~sK~~-~~~g~G~~~~~~~~~~~~~~~~~~~ 258 (420)
T 1t3i_A 184 CVNPAEEIAQLAHQAGAKVLVDACQSAPHYP----LDVQLIDCDWLVASGHKMC-APTGIGFLYGKEEILEAMPPFFGGG 258 (420)
T ss_dssp BBCCHHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHSCCCSCST
T ss_pred CcCCHHHHHHHHHHcCCEEEEEhhhccCCcc----CchhhcCCCEEEEehhhhc-CCCceEEEEEchHHHhhcCceecCC
Confidence 4558999999999999999999999876441 01000 2699999999977 7776 99999999888876543321
Q ss_pred --------------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC----C
Q psy13354 257 --------------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG----T 311 (1342)
Q Consensus 257 --------------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~----~ 311 (1342)
..+++.....+++..++......+++.+.+++.++++++.+.|.+. |+++..+. .
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~ 338 (420)
T 1t3i_A 259 EMIAEVFFDHFTTGELPHKFEAGTPAIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQIPQLRLYGPNPKHGD 338 (420)
T ss_dssp TSEEEECSSCEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTCTTEEEESCCGGGSC
T ss_pred CccccccccccCCCCchhhccCCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCCeEEeCCCccccc
Confidence 1233333333333333333322356778899999999999999986 88876532 1
Q ss_pred CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCC-Cccc-cccccccccccccc
Q psy13354 312 KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPE-KPYF-TSGIRLGSSAITTR 369 (1342)
Q Consensus 312 ~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~-~~~~-~~~lRi~~~~~~t~ 369 (1342)
.++++++.++. .+.+.+...+.++||.+.++..+..+. ..++ .+.+|++++..++.
T Consensus 339 ~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~ 396 (420)
T 1t3i_A 339 RAALASFNVAG--LHASDVATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTK 396 (420)
T ss_dssp BCSEEEEEETT--BCHHHHHHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCH
T ss_pred cCCEEEEEECC--CCHHHHHHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCH
Confidence 25566667653 233444466667799998764332110 0011 35799999876553
No 76
>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}
Probab=99.86 E-value=3.9e-20 Score=219.27 Aligned_cols=301 Identities=15% Similarity=0.121 Sum_probs=211.0
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
.+.|.+..+++++ ++.+++++.+.+.. ..+|+. ... .++++ .+++++|.+ +.+++++||++|+.
T Consensus 30 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~------~~~-~~lr~----~la~~~~~~~~~v~~~~g~~~a~~ 96 (365)
T 3get_A 30 KEVIKLASNENPFGTPPKAIECLRQNANK--AHLYPD------DSM-IELKS----TLAQKYKVQNENIIIGAGSDQVIE 96 (365)
T ss_dssp SCCEECSSCCCTTCSCHHHHHHHHHHGGG--TTSCCC------TTC-HHHHH----HHHHHHTCCGGGEEEESSHHHHHH
T ss_pred CceEEecCCCCCCCCCHHHHHHHHHHHHh--hccCCC------CCh-HHHHH----HHHHHhCCCcceEEECCCHHHHHH
Confidence 4668888887765 45699998887742 122322 111 35555 888888876 55666669999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC-CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~ 180 (1342)
.++.+++++||+|++..+.+ ......+...|. +++.++. ++++ +|++++++.+++ ++++++++++++| ..
T Consensus 97 ~~~~~l~~~gd~vl~~~~~~---~~~~~~~~~~g~--~~~~v~~~~~~~-~d~~~l~~~l~~-~~~~v~~~~p~nptG~~ 169 (365)
T 3get_A 97 FAIHSKLNSKNAFLQAGVTF---AMYEIYAKQCGA--KCYKTQSITHNL-DEFKKLYETHKD-EIKLIFLCLPNNPLGEC 169 (365)
T ss_dssp HHHHHHCCTTCEEEECSSCC---THHHHHHHHHTC--EEEECSSSSCCH-HHHHHHHHHTTT-TEEEEEEESSCTTTCCC
T ss_pred HHHHHHhCCCCEEEEeCCCh---HHHHHHHHHcCC--EEEEEecCCCCC-CCHHHHHHHhCC-CCCEEEEcCCCCCCCCC
Confidence 99999999999999766444 444555566676 5555565 5678 999999999874 5667666666665 44
Q ss_pred cCHHHHHHHHH--HcCCEEEEEcccchhhh--hcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEechhHHH
Q psy13354 181 IDFERFYHIAK--NINSYFMVDMAHYAGLI--AAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMKKKYKKI 248 (1342)
Q Consensus 181 ~~l~~I~~la~--~~gi~LIvDea~~~g~~--~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~ 248 (1342)
.+.++|.++++ ++|++||+|++|+.+.+ ......+... ..+++++|+||++ |+.| ||+++++++++.
T Consensus 170 ~~~~~l~~l~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~ 248 (365)
T 3get_A 170 LDASEATEFIKGVNEDCLVVIDAAYNEFASFKDSKKHLEPCELIKEFDNVLYLGTFSKLY-GLGGLRIGYGIANANIISA 248 (365)
T ss_dssp CCHHHHHHHHHTSCTTSEEEEECTTHHHHHHHCGGGCCCHHHHHHHCTTEEEEEESSSTT-SCTTTCCEEEEECHHHHHH
T ss_pred cCHHHHHHHHHhCCCCcEEEEeCccHHHhcccCCcccccHhHHhccCCCEEEEeecchHh-cCcchheEEEEcCHHHHHH
Confidence 47777777777 67999999999986653 2222222211 2358899999999 5445 999999999988
Q ss_pred HhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHH
Q psy13354 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 249 l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~ 328 (1342)
+......+ +++.+.+.++..++.. . +++++.++++.++++++.+.|.+.|+++.. ..++++|+.++.. ...+
T Consensus 249 ~~~~~~~~---~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~l~~~g~~~~~--~~~~~~~~~~~~~-~~~~ 320 (365)
T 3get_A 249 FYKLRAPF---NVSNLALKAAVAAMDD-D-EFTEKTLENNFSQMELYKEFAKKHNIKIID--SYTNFITYFFDEK-NSTD 320 (365)
T ss_dssp HHHHSCTT---CSCHHHHHHHHHHHTC-H-HHHHHHHHHHHHHHHHHHHHHHHTTCEECC--CSSSEEEEECSSS-CHHH
T ss_pred HHHhcCCC---CcCHHHHHHHHHHhCC-H-HHHHHHHHHHHHHHHHHHHHHHhCCCEECC--CCCeEEEEECCCC-CHHH
Confidence 87754443 2445555555545442 2 467888999999999999999999888743 4566789998765 3445
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+...+. ++||.+.++..++ .+++|++++
T Consensus 321 ~~~~l~-~~gi~v~~g~~~~-------~~~iRis~~ 348 (365)
T 3get_A 321 LSEKLL-KKGIIIRNLKSYG-------LNAIRITIG 348 (365)
T ss_dssp HHHHHH-TTTEECEECGGGT-------CSEEEEECC
T ss_pred HHHHHH-HCCEEEEECccCC-------CCEEEEEcC
Confidence 555554 5699999876554 246999987
No 77
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*
Probab=99.85 E-value=3.2e-20 Score=222.87 Aligned_cols=333 Identities=15% Similarity=0.137 Sum_probs=223.9
Q ss_pred cchHHHHHHHHHHHhc---cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH
Q psy13354 11 IDPKIWEIILKEKQRQ---NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI 85 (1342)
Q Consensus 11 ~~~~~~~~~~~~~~~~---~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~ 85 (1342)
.+..++....+ ... ++.+.+..+.+. .++.+.+++.+.+.. ...+ |... ..++++++++++.+.
T Consensus 14 ~g~~~~d~~g~--~~g~~~~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~------y~~~--~~~l~~~la~~l~~~ 82 (399)
T 1c7n_A 14 LGSLKWDLMYS--QNPEVGNEVVPLSVADMEFKNPPELIEGLKKYLDE-TVLG------YTGP--TEEYKKTVKKWMKDR 82 (399)
T ss_dssp TTBHHHHHHHH--HCTTCCTTCCCCCSSSCSSCCCHHHHHHHHHHHHH-CCCS------SBCC--CHHHHHHHHHHHHHH
T ss_pred CCccccccchh--hccccCCCceeeeecCCCCCCCHHHHHHHHHHHhc-CCCC------CCCC--cHHHHHHHHHHHHHH
Confidence 44566665432 111 355777777653 345699998888743 1112 2221 568888888888877
Q ss_pred hC--CC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-C--CCCCCHHHHH
Q psy13354 86 FN--AE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-K--KEKIDYKKVE 159 (1342)
Q Consensus 86 ~g--~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~--~~~id~e~Le 159 (1342)
+| .+ +.+++++||++|+..++.+++++||+|++..+.++ .....+...|. +++.++.+ + ++.+|+++++
T Consensus 83 ~g~~~~~~~v~~t~g~~~a~~~~~~~l~~~gd~vl~~~p~~~---~~~~~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~ 157 (399)
T 1c7n_A 83 HQWDIQTDWIINTAGVVPAVFNAVREFTKPGDGVIIITPVYY---PFFMAIKNQER--KIIECELLEKDGYYTIDFQKLE 157 (399)
T ss_dssp HCCCCCGGGEEEESSHHHHHHHHHHHHCCTTCEEEECSSCCT---HHHHHHHTTTC--EEEECCCEEETTEEECCHHHHH
T ss_pred hCCCCChhhEEEcCCHHHHHHHHHHHhcCCCCEEEEcCCCcH---hHHHHHHHcCC--EEEecccccCCCCEEEcHHHHH
Confidence 77 33 45666669999999999999999999997665444 44444556666 45555553 2 3568999999
Q ss_pred HHHHhcCCeEEEEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC------CCcEEEecCC
Q psy13354 160 YLAKKNKPKLIIAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP------FADFITSTTH 228 (1342)
Q Consensus 160 ~~i~~~~~~liv~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~------~~Divv~S~s 228 (1342)
+.+++.++++++++++++| ...+ +++|+++|++||++||+||+|+.+.+.+..+.+... ..+++++|+|
T Consensus 158 ~~l~~~~~~~v~~~~~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~s 237 (399)
T 1c7n_A 158 KLSKDKNNKALLFCSPHNPVGRVWKKDELQKIKDIVLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPS 237 (399)
T ss_dssp HHHTCTTEEEEEEESSBTTTTBCCCHHHHHHHHHHHHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSH
T ss_pred HHhccCCCcEEEEcCCCCCCCcCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCcccHHHcCccccCcEEEEEeCh
Confidence 9997445677776666666 2334 999999999999999999999875543322222211 2358899999
Q ss_pred ccCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-C-
Q psy13354 229 KSLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-R- 302 (1342)
Q Consensus 229 K~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~- 302 (1342)
|++ |+.| ||++++ +++++.+......+.+++++.+.+.++..++... .++++..++++.++++++.+.|.+ .
T Consensus 238 K~~-~~~G~r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~ 315 (399)
T 1c7n_A 238 KTF-NIAGMGMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKEC-GKWLDGCIKVIDKNQRIVKDFFEVNHP 315 (399)
T ss_dssp HHH-TCGGGCCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hhc-cccchheEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHHHHHHHhhCC
Confidence 999 5555 999987 4688887664444434344555555555555432 346778888999999999999988 5
Q ss_pred CcEEeeCCCCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 303 GIRIVSGGTKSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 303 g~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
|+.+.. +.+++++|+.++.. ....++...+++++||.+.++..+... ..+++|++++..
T Consensus 316 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~----~~~~iRis~~~~ 375 (399)
T 1c7n_A 316 EIKAPL-IEGTYLQWIDFRALKMDHKAMEEFMIHKAQIFFDEGYIFGDG----GIGFERINLAAP 375 (399)
T ss_dssp TSBCCC-CSBSSEEEEECGGGCCCHHHHHHHHHHTTCCCCEEGGGGCGG----GTTEEEEECCSC
T ss_pred CCeEec-CCceEEEEEEcccCCCCHHHHHHHHHHhCCEEEeCccccCCC----CCCeEEEEeccC
Confidence 776543 45567788998753 234456666666779999987544311 145799998863
No 78
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3
Probab=99.85 E-value=4.3e-20 Score=218.35 Aligned_cols=310 Identities=16% Similarity=0.139 Sum_probs=208.3
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCC-c-chHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG-C-KFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~-~-~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~ 103 (1342)
.+.+.+++...++.+++++.+.+ ++ .+.. . ....+ +++++++++|.+ +.+++++||++|+.
T Consensus 5 ~~~~~~gp~~~~~~v~~a~~~~~------~~----~~~~~~~~~~~~----l~~~la~~~g~~~~~~~v~~~~g~t~a~~ 70 (366)
T 1m32_A 5 YLLLTPGPLTTSRTVKEAMLFDS------CT----WDDDYNIGVVEQ----IRQQLTALATASEGYTSVLLQGSGSYAVE 70 (366)
T ss_dssp CEECSSSSCCCCHHHHHTTCCCC------CT----TSHHHHTTTHHH----HHHHHHHHHCSSSSEEEEEEESCHHHHHH
T ss_pred cccccCCCcCCCHHHHHHHhhhh------cC----CCHHHHHHHHHH----HHHHHHHHhCCCCcCcEEEEecChHHHHH
Confidence 46677777677888888876532 11 1110 1 33334 555888888843 24666669999999
Q ss_pred HHHHHccCCCCEEEEee-ccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-CCeEEEEcCCCCC--c
Q psy13354 104 AVFFSVLNPGDTIMGMS-LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-KPKLIIAGASAYS--Q 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~-~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-~~~liv~~~s~~~--~ 179 (1342)
.++.+++.+||+|++.+ ..|+.. ........|.. ++.++.++++.+|++++++.+++. ++++++++++++| .
T Consensus 71 ~~~~~~~~~gd~vi~~~~~~~~~~--~~~~~~~~g~~--~~~v~~~~~~~~d~~~l~~~l~~~~~~~~v~~~~~~nptG~ 146 (366)
T 1m32_A 71 AVLGSALGPQDKVLIVSNGAYGAR--MVEMAGLMGIA--HHAYDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGM 146 (366)
T ss_dssp HHHHHSCCTTCCEEEEESSHHHHH--HHHHHHHHTCC--EEEEECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTE
T ss_pred HHHHHhcCCCCeEEEEeCCCccHH--HHHHHHHhCCc--eEEEeCCCCCCCCHHHHHHHHhcCCCeEEEEEecccCCcce
Confidence 99999999999988654 333321 22334555664 444456667889999999999875 4566666555554 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCcc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPGI 257 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~~ 257 (1342)
..++++|.++|++||++||+|++|+.+.... +... .+|++++|+||+++|+.| |++++++++++.+......+.
T Consensus 147 ~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~----~~~~~~~di~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~~~~~ 222 (366)
T 1m32_A 147 LNPIDEVGALAHRYGKTYIVDAMSSFGGIPM----DIAALHIDYLISSANKCIQGVPGFAFVIAREQKLAACKGHSRSLS 222 (366)
T ss_dssp ECCHHHHHHHHHHHTCEEEEECTTTTTTSCC----CTTTTTCSEEEEESSSTTCCCSSEEEEEEEHHHHTTCTTCCSCST
T ss_pred ecCHHHHHHHHHHcCCEEEEECCccccCcCc----cccccCccEEEecCcccccCCCceEEEEECHHHHHhhcCCCCCcc
Confidence 5589999999999999999999998664421 1111 369999999999878888 999999988766654211110
Q ss_pred -----------------ccCCcHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhCCcEEeeC--CCCCeEEE
Q psy13354 258 -----------------QGGPLMHVIAAKAVAFKEVLKPD-FKIYQKQVVKNAKILSKILDQRGIRIVSG--GTKSHIIL 317 (1342)
Q Consensus 258 -----------------~~~~~~~~~~Aaa~al~~~l~~~-~~~~~~~l~~~a~~l~~~L~~~g~~~~~~--~~~~~~v~ 317 (1342)
.++++...++++..++......+ +++..+++.++++++.+.|.+.|+++..+ +..++++|
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~ 302 (366)
T 1m32_A 223 LDLYAQWRCMEDNHGKWRFTSPTHTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNTLLDDELHSPIITA 302 (366)
T ss_dssp TCHHHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCBSSCGGGBCSSEEE
T ss_pred ccHHHHHhhhcccCCCCCCCCCHHHHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHCCCeeccCchhcCceEEE
Confidence 12344455555555554443322 67788999999999999999888766432 12345888
Q ss_pred EEccC--CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 318 VDLRN--KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 318 i~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.++. .....++...+.+ +||.+.++..+ ..+++|++++..++
T Consensus 303 ~~~~~~~~~~~~~~~~~l~~-~gi~v~~~~~~-------~~~~iRi~~~~~~~ 347 (366)
T 1m32_A 303 FYSPEDPQYRFSEFYRRLKE-QGFVIYPGKVS-------QSDCFRIGNIGEVY 347 (366)
T ss_dssp EECCCCTTCCHHHHHHHHHH-TTEECEECCCS-------SSCEEEEECCSSCC
T ss_pred EEcCccCCCCHHHHHHHHHH-CCEEEECCcCC-------CCCEEEEecCCCCC
Confidence 88874 2233455555555 59999876433 14579999988655
No 79
>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.85 E-value=4.2e-20 Score=221.26 Aligned_cols=310 Identities=17% Similarity=0.131 Sum_probs=213.8
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
+..+.+..+.+. .++.+.+++.+.+.. .. ..|+...+..++++++++++.+.+|.+ +.+++++||++|
T Consensus 41 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~------~~y~~~~g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~a 113 (389)
T 1o4s_A 41 EDVINLTAGEPDFPTPEPVVEEAVRFLQK-GE------VKYTDPRGIYELREGIAKRIGERYKKDISPDQVVVTNGAKQA 113 (389)
T ss_dssp CCCEECCCSSCSSCCCHHHHHHHHHHHTT-CC------CCCCCTTCCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHhc-CC------CCCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHH
Confidence 456788777654 346688888877742 11 123333455688888888887777752 456666588999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++.+||+|++..+.|+++ ...+...|..+ +.++.+ +++.+|++++++.+++ ++++++++++++|
T Consensus 114 l~~~~~~l~~~gd~Vl~~~~~~~~~---~~~~~~~g~~~--~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~npt 187 (389)
T 1o4s_A 114 LFNAFMALLDPGDEVIVFSPVWVSY---IPQIILAGGTV--NVVETFMSKNFQPSLEEVEGLLVG-KTKAVLINSPNNPT 187 (389)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTTH---HHHHHHTTCEE--EEEECCGGGTTCCCHHHHHHTCCT-TEEEEEEESSCTTT
T ss_pred HHHHHHHhCCCCCEEEEcCCCchhH---HHHHHHcCCEE--EEEecCCccCCCCCHHHHHHhccc-CceEEEEcCCCCCC
Confidence 9999999999999999888666544 44456667744 444554 3577899999998865 4566666665555
Q ss_pred -cc---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C---CCCcEEEecCCccCCCCCe---eEEEEechhH
Q psy13354 179 -QY---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V---PFADFITSTTHKSLRGPRG---GFILMKKKYK 246 (1342)
Q Consensus 179 -~~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l---~~~Divv~S~sK~l~gp~G---G~iv~~~~l~ 246 (1342)
.. .++++|+++|++||++||+|++|+.+.+.+ ...+. + ...|++++|+||++ |+.| ||++++++++
T Consensus 188 G~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~l~~~~~~~ 265 (389)
T 1o4s_A 188 GVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTD-EFTSILDVSEGFDRIVYINGFSKSH-SMTGWRVGYLISSEKVA 265 (389)
T ss_dssp CCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBCSS-CCCCHHHHCSSSTTEEEEEESTTTT-TCGGGCCEEEECCHHHH
T ss_pred CCCCCHHHHHHHHHHHHHcCCEEEEEccccccccCC-CCCCHhhcCCCCCcEEEEeechhhc-CCcccceEEEEeCHHHH
Confidence 22 249999999999999999999998765422 21111 1 23589999999999 6555 9999999888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCC
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
+.+......+.++. +...+.++..++ ....++..+++.++++++.+.|.+.|+++.. +.+++++|+.++ ...
T Consensus 266 ~~l~~~~~~~~~~~-~~~~~~a~~~~l----~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~--~~~ 337 (389)
T 1o4s_A 266 TAVSKIQSHTTSCI-NTVAQYAALKAL----EVDNSYMVQTFKERKNFVVERLKKMGVKFVE-PEGAFYLFFKVR--GDD 337 (389)
T ss_dssp HHHHHHHHHHTCSC-CHHHHHHHHHHT----TCCCHHHHHHHHHHHHHHHHHHHHTTCCCCC-CSBSSEEEEECS--SCH
T ss_pred HHHHHHhhhcccCC-CHHHHHHHHHHH----hccHHHHHHHHHHHHHHHHHHHHhcCCeeec-CCcceEEEEeCC--CCH
Confidence 88766433333333 233344333332 2235677889999999999999988877643 455778888886 234
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.++...+++++||.+.++..++. .+++|++++.
T Consensus 338 ~~l~~~l~~~~gi~v~~g~~f~~------~~~~Ris~~~ 370 (389)
T 1o4s_A 338 VKFCERLLEEKKVALVPGSAFLK------PGFVRLSFAT 370 (389)
T ss_dssp HHHHHHHHHHHCEECEEGGGGTC------TTEEEEECCS
T ss_pred HHHHHHHHHHCCEEEeCchhcCC------CCeEEEEEeC
Confidence 56777777566999998754432 2469999884
No 80
>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*
Probab=99.85 E-value=2.2e-20 Score=222.08 Aligned_cols=318 Identities=14% Similarity=0.130 Sum_probs=214.1
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-- 110 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-- 110 (1342)
++..+.++.+.+++.+.+.+.+ +++.. .+.......++.+++++++++++|.+ +.+++++||++|+..++.++.
T Consensus 7 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~ 83 (382)
T 4hvk_A 7 TSAKPVDERILEAMLPYMTESF--GNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMR 83 (382)
T ss_dssp TTCCCCCHHHHHHHHHHHHTSC--CCTTC-SSHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcCCCCHHHHHHHHHHHHhhc--CCCcc-cchHHHHHHHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhh
Confidence 3445677889999998886433 33332 23333445667777888999999987 346666699999999999997
Q ss_pred --CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 111 --NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 111 --~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
+|||+|+++...++++......+...|. +++.++.++++.+|++++++.+++ +++++++++++++ ...++++|
T Consensus 84 ~~~~gd~vi~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i 160 (382)
T 4hvk_A 84 NARKGKHILVSAVEHMSVINPAKFLQKQGF--EVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEEI 160 (382)
T ss_dssp HGGGCCEEEEETTCCHHHHHHHHHHHHTTC--EEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHH
T ss_pred hcCCCCEEEECCCCcHHHHHHHHHHHhcCC--EEEEeccCCCCCcCHHHHHHHhcc-CceEEEEECCCCCceeeCCHHHH
Confidence 9999999888777766555545555676 555567777888999999999875 4567777666655 45599999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Ccc
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGI 257 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~ 257 (1342)
.++|++||+ ||+|++|+.+.... ... .+|++++|+||++ |+.| |+++++++. .+..... ...
T Consensus 161 ~~l~~~~~~-li~D~a~~~~~~~~-----~~~~~~~d~~~~s~~K~~-g~~g~g~~~~~~~~--~~~~~~~~~~~~~~~~ 231 (382)
T 4hvk_A 161 SEVLAGKAA-LHIDATASVGQIEV-----DVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGGGQENGLR 231 (382)
T ss_dssp HHHHSSSSE-EEEECTTTBTTBCC-----CHHHHTCSEEEEESGGGT-SCTTCEEEEEETTC--CCCCSSCSSCTGGGTS
T ss_pred HHHHHHcCE-EEEEhHHhcCCCCC-----CchhcCCCEEEEeHHHhc-CCCceEEEEEcCcc--CcCcccccCCCcCccc
Confidence 999999999 99999998764411 111 3689999999987 7777 888888764 2222111 011
Q ss_pred ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC--CeEEEEEccCCCCCHHHHHHHH
Q psy13354 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK--SHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 258 ~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~--~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
.++++.+...++..++... .+++++..+++.++++++.+.|.+. |+.+..++.. .+++++.++.. +.+.+...+
T Consensus 232 ~~~~~~~~~~~~~~al~~~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l 308 (382)
T 4hvk_A 232 SGSENVPSIVGFGKAAEIT-AMEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSYI--EGESIVLSL 308 (382)
T ss_dssp CSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETTC--CHHHHHHHH
T ss_pred cCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCccccCCCEEEEEECCC--CHHHHHHHH
Confidence 2344455555555554433 3477888999999999999999986 7776542211 24666666532 334444555
Q ss_pred HHCCceeeeccCCCCCCC-------cc------ccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEK-------PY------FTSGIRLGSSAITTR 369 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~-------~~------~~~~lRi~~~~~~t~ 369 (1342)
.++||.+.++..+..... .+ ..+++|++++..++.
T Consensus 309 ~~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~ 356 (382)
T 4hvk_A 309 DMAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTD 356 (382)
T ss_dssp HHTTCBCBCC--------CCCHHHHHTTCCHHHHHTEEEEECCTTCCH
T ss_pred HHCCEEEeeCCccCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCH
Confidence 667999987643332210 00 036799999876553
No 81
>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1
Probab=99.85 E-value=1.6e-20 Score=226.13 Aligned_cols=318 Identities=15% Similarity=0.085 Sum_probs=215.5
Q ss_pred ccCceeeeecCC-----CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCC
Q psy13354 26 QNNNIELIASEN-----YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHS 97 (1342)
Q Consensus 26 ~~~~i~l~a~~n-----~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~s 97 (1342)
.++.+.+..+.+ ..++.+.+++.+.+.... ..|+...+..++++++++++.+.+|.. +.+++++|
T Consensus 37 g~~~i~l~~~~~~~~~~~~~~~v~~a~~~~~~~~~-------~~y~~~~g~~~l~~~la~~l~~~~g~~~~~~~v~~t~g 109 (406)
T 1xi9_A 37 GIKVIRLNIGDPVKFDFQPPEHMKEAYCKAIKEGH-------NYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAA 109 (406)
T ss_dssp TCCCEECCCCCGGGTTCCCCHHHHHHHHHHHHTTC-------CSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESH
T ss_pred CCCEEEecCCCCCcCCCCCCHHHHHHHHHHHhcCC-------CCCCCCCCcHHHHHHHHHHHHHhcCCCCCHHHEEEcCC
Confidence 345677777765 345668888888774311 123333445688888888887776643 45666658
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCC
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~ 177 (1342)
|++|+..++.+++++||+|++..+.|++ ....+...|..+..++++.++++.+|++++++.+++ ++++++++++++
T Consensus 110 ~~~al~~~~~~l~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~-~~~~v~i~~p~n 185 (406)
T 1xi9_A 110 VTEALQLIFGALLDPGDEILVPGPSYPP---YTGLVKFYGGKPVEYRTIEEEDWQPDIDDIRKKITD-RTKAIAVINPNN 185 (406)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEEESCCHH---HHHHHHHTTCEEEEEEEEGGGTSEECHHHHHHHCCT-TEEEEEEESSCT
T ss_pred hHHHHHHHHHHhCCCCCEEEEcCCCCcc---HHHHHHHcCCEEEEeecCCCcCCcCCHHHHHHhhCc-CceEEEEECCCC
Confidence 8999999999999999999988765543 444556677755555443223567899999998876 456666655555
Q ss_pred C-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--C-CCC-cEEEecCCccCCCCCe---eEEE--Eec
Q psy13354 178 S-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--V-PFA-DFITSTTHKSLRGPRG---GFIL--MKK 243 (1342)
Q Consensus 178 ~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l-~~~-Divv~S~sK~l~gp~G---G~iv--~~~ 243 (1342)
| +. .++++|+++|++||++||+|++|+.+.+ .+..... + ... +++++|+||++ |+.| ||++ +++
T Consensus 186 ptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~ 263 (406)
T 1xi9_A 186 PTGALYDKKTLEEILNIAGEYEIPVISDEIYDLMTY-EGEHISPGSLTKDVPVIVMNGLSKVY-FATGWRLGYMYFVDPE 263 (406)
T ss_dssp TTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBS-SSCCCCHHHHCSSSCEEEEEESTTTT-CCGGGCCEEEEEECTT
T ss_pred CCCCCcCHHHHHHHHHHHHHcCCEEEEEcCcccccc-CCCCCCHHHcCCCceEEEEecccccc-CCCccEEEEEEEecCc
Confidence 5 32 2599999999999999999999987654 2222111 1 224 78899999999 5555 9998 888
Q ss_pred ----hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEE
Q psy13354 244 ----KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILV 318 (1342)
Q Consensus 244 ----~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i 318 (1342)
++++.+....... .+++.+.+.++..++. ...+++++.++++.++++++.+.|.+. |+.+.. +.+++++|+
T Consensus 264 ~~~~~l~~~l~~~~~~~--~~~~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~-~~~~~~~~~ 339 (406)
T 1xi9_A 264 NKLSEVREAIDRLARIR--LCPNTPAQFAAIAGLT-GPMDYLKEYMKKLKERRDYIYKRLNEIPGISTTK-PQGAFYIFP 339 (406)
T ss_dssp CTTHHHHHHHHHHHHHT--CCSCSHHHHHHHHHHH-SCCHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBSSEECC
T ss_pred hhHHHHHHHHHHHHHhh--cCCCHHHHHHHHHHHh-CCcHHHHHHHHHHHHHHHHHHHHHHhCCCCeeec-CCeeEEEEE
Confidence 8888776533222 2333444555444443 233357788899999999999999987 776643 445677887
Q ss_pred EccC--CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 319 DLRN--KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 319 ~~~~--~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.++. .....++...+++++||.+.++..++.. ..+++|++++
T Consensus 340 ~~~~~~~~~~~~l~~~l~~~~gi~v~~g~~f~~~----~~~~lRis~~ 383 (406)
T 1xi9_A 340 KIEVGPWKNDKEFVLDVLHNAHVLFVHGSGFGEY----GAGHFRAVFL 383 (406)
T ss_dssp EECSCSCSSHHHHHHHHHHHHCEECEEGGGGCGG----GTTBEEEECC
T ss_pred ecCccCCCCHHHHHHHHHHhCCEEEeCchhcCCC----CCCEEEEEec
Confidence 7764 2234566777775679999987544321 1357999987
No 82
>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*
Probab=99.85 E-value=1e-19 Score=218.52 Aligned_cols=328 Identities=15% Similarity=0.102 Sum_probs=215.3
Q ss_pred ceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC-C-CceEecCCHHHHHHHH
Q psy13354 29 NIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA-E-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~-~-~~vi~~~sGs~A~~~a 105 (1342)
.+.+..+. +..++.+.+++.+.+...+ +.+....+............+++.+++++|. + +.+++++||++|+..+
T Consensus 24 ~i~l~~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~ 101 (406)
T 1kmj_A 24 LAYLDSAASAQKPSQVIDAEAEFYRHGY--AAVHRGIHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLV 101 (406)
T ss_dssp CEECCTTTCCCCCHHHHHHHHHHHHHTC--CCCSSCSSHHHHHHHHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHH
T ss_pred eEEecCCccCCCCHHHHHHHHHHHHhhc--CCCCCCcchHHHHHHHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHH
Confidence 45555443 4567779999888875422 1221111111111234455577799999998 3 6667776999999999
Q ss_pred HHHc----cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 106 FFSV----LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 106 l~al----~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+.++ +++||+|+++...|++..... ......|. +++.++.++++.+|++++++.+++ ++++|++++++++
T Consensus 102 ~~~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG 178 (406)
T 1kmj_A 102 ANSWGNSNVRAGDNIIISQMEHHANIVPWQMLCARVGA--ELRVIPLNPDGTLQLETLPTLFDE-KTRLLAITHVSNVLG 178 (406)
T ss_dssp HHHTHHHHCCTTCEEEEETTCCGGGTHHHHHHHHHHTC--EEEEECBCTTSCBCGGGHHHHCCT-TEEEEEEESBCTTTC
T ss_pred HHHhhhhcCCCCCEEEEecccchHHHHHHHHHHHhCCC--EEEEEecCCCCCcCHHHHHHHhcc-CCeEEEEeCCCcccc
Confidence 9999 899999998887776654332 23445566 455556666788999999998875 4566666665554
Q ss_pred cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccCCc
Q psy13354 179 QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 179 ~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~~~ 256 (1342)
...++++|+++|++||++||+|++|+.|... ..... ..|++++|+||++ |+.| |++++++++++.+.....++
T Consensus 179 ~~~~l~~i~~l~~~~~~~li~D~~~~~g~~~----~~~~~~~~d~~~~s~~K~~-g~~G~G~~~~~~~~~~~~~~~~~~~ 253 (406)
T 1kmj_A 179 TENPLAEMITLAHQHGAKVLVDGAQAVMHHP----VDVQALDCDFYVFSGHKLY-GPTGIGILYVKEALLQEMPPWEGGG 253 (406)
T ss_dssp CBCCHHHHHHHHHHTTCEEEEECTTTTTTSC----CCHHHHTCSEEEEEGGGTT-SCTTCEEEEECHHHHHHCCCSSCST
T ss_pred CcCCHHHHHHHHHHcCCEEEEEchhhcCCCC----CcccccCCCEEEEEchhcc-CCCCcEEEEEeHHHHhhcCCcccCC
Confidence 4558999999999999999999999875431 11001 3689999999999 8888 99999999888876533211
Q ss_pred ---------------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCe
Q psy13354 257 ---------------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSH 314 (1342)
Q Consensus 257 ---------------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~ 314 (1342)
..+++.....+++..++......+++...+++.++++++.+.|.+. |+++..+...+.
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~ 333 (406)
T 1kmj_A 254 SMIATVSLSEGTTWTKAPWRFEAGTPNTGGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLG 333 (406)
T ss_dssp TSEEEEETTTEEEECCTTGGGCCSSCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCS
T ss_pred CceeecccccccccCCCchhccCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCCeEEecCCCcCC
Confidence 1233333333333334433332367778889999999999999986 787754321345
Q ss_pred EEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCC-ccc-ccccccccccccc
Q psy13354 315 IILVDLRNKKITGKIAESILESANIICNKNSIPNDPEK-PYF-TSGIRLGSSAITT 368 (1342)
Q Consensus 315 ~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~-~~~-~~~lRi~~~~~~t 368 (1342)
++++.+++ ....++. ..+.++||.+.++..+..+.. .++ .+.+|++++..++
T Consensus 334 ~~~~~~~~-~~~~~~~-~~l~~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t 387 (406)
T 1kmj_A 334 VIAFNLGK-HHAYDVG-SFLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNT 387 (406)
T ss_dssp EEEEEETT-CCHHHHH-HHHHHTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCC
T ss_pred EEEEEECC-CCHHHHH-HHHhhCCcEEEeccccchHHHHhcCCCCeEEEEeecCCC
Confidence 56666653 2233444 555667999987643211000 000 3579999987655
No 83
>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*
Probab=99.85 E-value=4.4e-20 Score=219.86 Aligned_cols=319 Identities=17% Similarity=0.173 Sum_probs=209.5
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc----C
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL----N 111 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~----~ 111 (1342)
...++.+++++.+.+.+.|. .+... +............+++++++++|.+ +.+++++||++|+..++.++. .
T Consensus 11 ~~~~~~v~~a~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~ 87 (384)
T 1eg5_A 11 TRVDDRVLEEMIVFYREKYG--NPNSA-HGMGIEANLHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETFEK 87 (384)
T ss_dssp CCCCHHHHHHHHHHHHTCCC--CTTCS-SHHHHHHHHHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHhcCC--CCccc-cHHHHHHHHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhccC
Confidence 46777899999988864332 22211 1111222344555677999999987 556666699999999999997 7
Q ss_pred CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHH
Q psy13354 112 PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHI 189 (1342)
Q Consensus 112 pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~l 189 (1342)
+||+|+++...|+++......+...|. +++.++.++++.+|++++++.+++ +++++++++++++ ...++++|.++
T Consensus 88 ~gd~vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~l 164 (384)
T 1eg5_A 88 RKRTIITTPIEHKAVLETMKYLSMKGF--KVKYVPVDSRGVVKLEELEKLVDE-DTFLVSIMAANNEVGTIQPVEDVTRI 164 (384)
T ss_dssp TCCEEEECTTSCHHHHHHHHHHHHTTC--EEEECCBCTTSCBCHHHHHHHCCT-TEEEEEEESBCTTTCBBCCHHHHHHH
T ss_pred CCCEEEECCCCchHHHHHHHHHHhcCC--EEEEEccCCCCccCHHHHHHHhCC-CCeEEEEECCCCCcccccCHHHHHHH
Confidence 999999877666554444433455666 556667777788999999998875 4566666666655 45589999999
Q ss_pred HHHcC--CEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechh--HHHHhhcc--CCccccCC
Q psy13354 190 AKNIN--SYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKY--KKIINSAV--FPGIQGGP 261 (1342)
Q Consensus 190 a~~~g--i~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l--~~~l~~~~--~~~~~~~~ 261 (1342)
|++|| ++||+|++|++|... .+... ..|++++|+||++ |+.| |++++++++ ...+.... .....+++
T Consensus 165 ~~~~~~~~~li~Dea~~~~~~~----~~~~~~~~di~~~s~sK~~-g~~G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (384)
T 1eg5_A 165 VKKKNKETLVHVDAVQTIGKIP----FSLEKLEVDYASFSAHKFH-GPKGVGITYIRKGVPIRPLIHGGGQERGLRSGTQ 239 (384)
T ss_dssp HHHHCTTCEEEEECTTTTTTSC----CCCTTTCCSEEEEEGGGGT-SCTTCEEEEECTTSCCCCSBCSSCTTTTTBCSCC
T ss_pred HHhcCCceEEEEEhhhhcCCcc----cCchhcCCCEEEecHHHhc-CCCceEEEEEcCCCccccccccCcccccccCCCC
Confidence 99999 999999999855331 11111 3699999999998 8887 999999875 21111100 01123445
Q ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC--CCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 262 LMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT--KSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 262 ~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
+.+.+.++..++.... +++++..+++.++++++.+.|.+.|+++..++. ...++++.+++. ...++.. .|.++||
T Consensus 240 ~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~l~~~gi 316 (384)
T 1eg5_A 240 NVPGIVGAARAMEIAV-EELSEAAKHMEKLRSKLVSGLMNLGAHIITPLEISLPNTLSVSFPNI-RGSTLQN-LLSGYGI 316 (384)
T ss_dssp CHHHHHHHHHHHHHHH-HTHHHHHHHHHHHHHHHHHHHHTTTCEECSCTTSBCTTEEEEECTTC-CHHHHHH-HHHHTTE
T ss_pred ChHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCCCeEEeCCcccCCCCEEEEEeCCC-CHHHHHH-HHhhCCe
Confidence 5666666555554433 367888999999999999999988888754322 134666766532 2334554 4556799
Q ss_pred eeeeccCCCCCC----------C---ccccccccccccccccc
Q psy13354 340 ICNKNSIPNDPE----------K---PYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 340 ~v~~~~~p~~~~----------~---~~~~~~lRi~~~~~~t~ 369 (1342)
.+.++..+.... + ....+++|++++..++.
T Consensus 317 ~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~ 359 (384)
T 1eg5_A 317 YVSTSSACTSKDERLRHVLDAMGVDRRIAQGAIRISLCKYNTE 359 (384)
T ss_dssp ECBC------------CHHHHTTCCHHHHHHEEEEECCTTCCH
T ss_pred EEeccccccCCCCcchHHHHHcCCChhhcCCeEEEECCCCCCH
Confidence 998754222110 0 00135799998875553
No 84
>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*
Probab=99.85 E-value=5.5e-20 Score=218.99 Aligned_cols=316 Identities=14% Similarity=0.109 Sum_probs=210.3
Q ss_pred cCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc---
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL--- 110 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~--- 110 (1342)
+....++.+++++.+.+.+.+ +++.+ .|.......+....+++++++++|.+ +.+++++||++|+..++.++.
T Consensus 8 ~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~ 84 (382)
T 4eb5_A 8 SAKPVDERILEAMLPYMTESF--GNPSS-VHSYGFKAREAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN 84 (382)
T ss_dssp TCCCCCHHHHHHHHHHHHTSC--CCTTC-SSHHHHHHHHHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHhcc--CCCCC-CcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhc
Confidence 345778889999998885422 33332 12222233456666788999999987 456666699999999999997
Q ss_pred -CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHH
Q psy13354 111 -NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFY 187 (1342)
Q Consensus 111 -~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~ 187 (1342)
++||+|+++...|+++......+...|. +++.++.++++.+|++++++.+++ ++++++++++++| ...++++|.
T Consensus 85 ~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~ 161 (382)
T 4eb5_A 85 ARKGKHILVSAVEHMSVINPAKFLQKQGF--EVEYIPVGKYGEVDVSFIDQKLRD-DTILVSVQHANNEIGTIQPVEEIS 161 (382)
T ss_dssp GGGCCEEEEETTCCHHHHHHHHHHTTTTC--EEEEECBCTTSCBCHHHHHHHCCT-TEEEEECCSBCTTTCBBCCHHHHH
T ss_pred cCCCCEEEECCCcchHHHHHHHHHHhCCc--EEEEeccCCCCccCHHHHHHHhcC-CCeEEEEeccCCCccccCCHHHHH
Confidence 8999999887666555444433334566 556667777788999999998875 4567777666655 455999999
Q ss_pred HHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC------Cccc
Q psy13354 188 HIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------PGIQ 258 (1342)
Q Consensus 188 ~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------~~~~ 258 (1342)
++|++||++ |+|++|+.|... . .+. ..|++++|+||++ |+.| |+++++++. .+..... ....
T Consensus 162 ~l~~~~~~~-i~D~a~~~g~~~----~-~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~--~l~~~~~~~~~~~~~~~ 232 (382)
T 4eb5_A 162 EVLAGKAAL-HIDATASVGQIE----V-DVEKIGADMLTISSNDIY-GPKGVGALWIRKEA--KLQPVILGGGQENGLRS 232 (382)
T ss_dssp HHHTTSSEE-EEECTTTBTTBC----C-CHHHHTCSEEEEETGGGT-CCSSCEEEEEETTC--CCCCSSCSSCTGGGTSC
T ss_pred HHHHHCCCE-EEEcchhcCCcc----c-CccccCCCEEEeehHHhc-CCCceEEEEEcccc--ccCceecCCCccccccC
Confidence 999999999 999999865331 1 111 3689999999997 7877 999988863 1221111 1223
Q ss_pred cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC--CCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 259 GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT--KSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 259 ~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~--~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
++++.+.+.++..++.... +++++..+++.++++++.+.|.+. |+++..+.. ..+++++.+++ ....++...+.
T Consensus 233 ~~~~~~~~~~~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~- 309 (382)
T 4eb5_A 233 GSENVPSIVGFGKAAEITA-MEWREEAERLRRLRDRIIDNVLKIEESYLNGHPEKRLPNNVNVRFSY-IEGESIVLSLD- 309 (382)
T ss_dssp SCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEECSCSSSBCTTEEEEEETT-SCHHHHHHHHH-
T ss_pred CCccHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCcccCCCCEEEEEeCC-cCHHHHHHHHH-
Confidence 4444555555554544333 367788899999999999999986 777644211 14577777763 22345555554
Q ss_pred HCCceeeeccCCCCCC----------C---cccccccccccccccc
Q psy13354 336 SANIICNKNSIPNDPE----------K---PYFTSGIRLGSSAITT 368 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~----------~---~~~~~~lRi~~~~~~t 368 (1342)
++||.+.++..+.... + ....+.+|++++..++
T Consensus 310 ~~gi~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~ 355 (382)
T 4eb5_A 310 MAGIQASTGSACSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNT 355 (382)
T ss_dssp HHTCBCBCCCGGGTSSCCCCHHHHHTTCCHHHHTTEEEEECCTTCC
T ss_pred HCCEEEeccccccCCCCcccHHHHHcCCChhccCCeEEEECCCCCC
Confidence 5699998754211100 0 0013579999887655
No 85
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.85 E-value=6.5e-20 Score=219.54 Aligned_cols=318 Identities=11% Similarity=0.050 Sum_probs=213.1
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHH-HHHHHHHHHHHHhC--CC-CceEecCCHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDL-IEKIAINRLKKIFN--AE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~-Le~~~~~~la~~~g--~~-~~vi~~~sGs~A 101 (1342)
+.+.+..+.+. .++.+.+++.+.+.. ...+|+ .. ..+ +++++++++.+.+| .+ +.+++++||++|
T Consensus 29 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~------~~--~~~~lr~~la~~l~~~~g~~~~~~~v~~t~g~~~a 99 (390)
T 1d2f_A 29 DLLPFTISDMDFATAPCIIEALNQRLMH-GVFGYS------RW--KNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYM 99 (390)
T ss_dssp -CEECCSSSCSSCCCHHHHHHHHHHHTT-CCCCCC------CS--CCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHH
T ss_pred CeeEeeecCCCCCCCHHHHHHHHHHHhC-CCCCCC------CC--ChHHHHHHHHHHHHHhcCCCCCHHHEEEcCCHHHH
Confidence 45777666643 345699998887742 111222 11 346 88878888887777 33 456666699999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+..++.+++++||+|++..+.+++ ....+...|..+..++++.+ .++.+|++++++.+++.++++++++++++| +
T Consensus 100 l~~~~~~l~~~gd~vl~~~p~y~~---~~~~~~~~g~~~~~v~~~~~~~~~~~d~~~l~~~l~~~~~~~v~l~~p~nptG 176 (390)
T 1d2f_A 100 VSELIRQWSETGEGVVIHTPAYDA---FYKAIEGNQRTVMPVALEKQADGWFCDMGKLEAVLAKPECKIMLLCSPQNPTG 176 (390)
T ss_dssp HHHHHHHSSCTTCEEEEEESCCHH---HHHHHHHTTCEEEEEECEECSSSEECCHHHHHHHHTSTTEEEEEEESSCTTTC
T ss_pred HHHHHHHhcCCCCEEEEcCCCcHH---HHHHHHHCCCEEEEeecccCCCccccCHHHHHHHhccCCCeEEEEeCCCCCCC
Confidence 999999999999999987755443 44445666774444443322 245689999999997645677776666665 2
Q ss_pred -c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC-C-CcEEEecCCccCCCCCe---eEEEEe-chhHH
Q psy13354 180 -Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP-F-ADFITSTTHKSLRGPRG---GFILMK-KKYKK 247 (1342)
Q Consensus 180 -~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~-~-~Divv~S~sK~l~gp~G---G~iv~~-~~l~~ 247 (1342)
. .++++|+++|++||++||+||+|+.+.+.+..+.+. +. . .|. ++|+||++ |+.| ||++++ +++++
T Consensus 177 ~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~-~~s~sK~~-~~~G~r~G~~~~~~~~~~~ 254 (390)
T 1d2f_A 177 KVWTCDELEIMADLCERHGVRVISDEIHMDMVWGEQPHIPWSNVARGDWAL-LTSGSKSF-NIPALTGAYGIIENSSSRD 254 (390)
T ss_dssp CCCCTTHHHHHHHHHHHTTCEEEEECTTTTCBCSSSCCCCGGGTCCSSEEE-EECSHHHH-TCGGGCCEEEEECSHHHHH
T ss_pred cCcCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCcCHHHcchhhHhh-ccCccHhh-cccChhheEEEECCHHHHH
Confidence 2 248999999999999999999998755432222221 11 1 267 99999999 5555 999986 67777
Q ss_pred HHhhccC-CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-C-CcEEeeCCCCCeEEEEEccCC-
Q psy13354 248 IINSAVF-PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-R-GIRIVSGGTKSHIILVDLRNK- 323 (1342)
Q Consensus 248 ~l~~~~~-~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~-g~~~~~~~~~~~~v~i~~~~~- 323 (1342)
.+..... .+.+++++.+.+.++..++.. ..+++++.++++.++++++.+.|.+ . |+.+.. +.+++++|+.++..
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~~~~~~ 332 (390)
T 1d2f_A 255 AYLSALKGRDGLSSPSVLALTAHIAAYQQ-GAPWLDALRIYLKDNLTYIADKMNAAFPELNWQI-PQSTYLAWLDLRPLN 332 (390)
T ss_dssp HHHHHHHTTSCCCSCCHHHHHHHHHHHHH-CHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCCCC-CSBCSEEEEECGGGC
T ss_pred HHHHHHhhhcccCCCCHHHHHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHhhCCCCEEec-CCccEEEEEEccccC
Confidence 7765433 233334445555555555543 2346778888999999999999988 4 676533 44567788998753
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+.++...+++++||.+.++..+... ..+++|++++.
T Consensus 333 ~~~~~l~~~l~~~~gi~v~~g~~f~~~----~~~~~Ris~~~ 370 (390)
T 1d2f_A 333 IDDNALQKALIEQEKVAIMPGYTYGEE----GRGFVRLNAGC 370 (390)
T ss_dssp CCHHHHHHHHHHTTCEECEEGGGGCGG----GTTEEEEECCS
T ss_pred CCHHHHHHHHHHHcCEEeeCccccCCC----CCCeEEEEecC
Confidence 234456666665679999987544321 13579999886
No 86
>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*
Probab=99.85 E-value=6.9e-20 Score=222.27 Aligned_cols=313 Identities=15% Similarity=0.114 Sum_probs=212.8
Q ss_pred CceeeeecCC------CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-----CC-CceEec
Q psy13354 28 NNIELIASEN------YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-----AE-AANVQP 95 (1342)
Q Consensus 28 ~~i~l~a~~n------~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-----~~-~~vi~~ 95 (1342)
+.|.|..+.. +.++.+.+++.+.+......+ |....+..++++ .++++++ .+ +.++++
T Consensus 55 ~~i~l~~g~~~~~g~~~~~~~v~~a~~~~~~~~~~~~------y~~~~g~~~lr~----~la~~~~~~~~~~~~~~v~~t 124 (427)
T 3dyd_A 55 TMISLSIGDPTVFGNLPTDPEVTQAMKDALDSGKYNG------YAPSIGFLSSRE----EIASYYHCPEAPLEAKDVILT 124 (427)
T ss_dssp CCEECCCSCTTTTSSSCCCHHHHHHHHHHHHHCCSSS------CCCTTCCHHHHH----HHHHHHCBTTBCCCGGGEEEE
T ss_pred CEEeCCCcCCCccCCCCCCHHHHHHHHHHHhcCcCCC------CCCCCCcHHHHH----HHHHHHhhcCCCCChHHEEEe
Confidence 3477776652 456669999888875422112 333344456666 6666666 33 555666
Q ss_pred CCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCC
Q psy13354 96 HSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGAS 175 (1342)
Q Consensus 96 ~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s 175 (1342)
+||++|+..++.+++.|||+|+++.+.++ .+...+...|..+..+++..+.++.+|++.+++.+++. +++++++++
T Consensus 125 ~g~t~al~~~~~~l~~~gd~vl~~~p~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~-~~~v~i~~p 200 (427)
T 3dyd_A 125 SGCSQAIDLCLAVLANPGQNILVPRPGFS---LYKTLAESMGIEVKLYNLLPEKSWEIDLKQLEYLIDEK-TACLIVNNP 200 (427)
T ss_dssp SSHHHHHHHHHHHHCCTTCEEEEEESCCT---HHHHHHHHTTCEEEEEEEEGGGTTEECHHHHHSSCCTT-EEEEEEESS
T ss_pred cCcHHHHHHHHHHhcCCCCEEEEcCCCch---hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHhccC-CCEEEEECC
Confidence 69999999999999999999998775554 44455567787666665544456788999999988764 444455455
Q ss_pred CCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC---C-CcEEEecCCccCCCCCe---eEEEEec
Q psy13354 176 AYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP---F-ADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 176 ~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~---~-~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
++| ...+ +++|+++|++||+++|+|++|..+.+....+..... . ..++++|+||.| ++.| ||+++++
T Consensus 201 ~nptG~~~~~~~l~~i~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~-~~~G~riG~~~~~~ 279 (427)
T 3dyd_A 201 SNPCGSVFSKRHLQKILAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRW-LVPGWRLGWILIHD 279 (427)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTS-SCGGGCCEEEEEEC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccC-CCcCcceEEEEecC
Confidence 555 3335 999999999999999999999865443322222111 1 136788999998 5666 9999884
Q ss_pred -------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeE
Q psy13354 244 -------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHI 315 (1342)
Q Consensus 244 -------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~ 315 (1342)
++.+.+...... ..+++...+.++..++.....+++++..+++.++++++.+.|++. |+.+.. +.++++
T Consensus 280 ~~~~~~~~i~~~l~~~~~~--~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-p~~g~~ 356 (427)
T 3dyd_A 280 RRDIFGNEIRDGLVKLSQR--ILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAAIPGLRPVR-PSGAMY 356 (427)
T ss_dssp STTSSHHHHHHHHHHHHHH--HCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEEC-CSBTTE
T ss_pred cchhhHHHHHHHHHHHHhc--cCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhcCCCceecC-CCeeEE
Confidence 566666543211 234445566666655554334567888899999999999999987 777643 566788
Q ss_pred EEEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 316 ILVDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 316 v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+|+.++.. ..+.+++..+++++||.+.++..+.. .+++|++++
T Consensus 357 ~~~~l~~~~~~~~~~~~~~~~~l~~~~gV~v~~g~~~~~------~~~iRis~~ 404 (427)
T 3dyd_A 357 LMVGIEMEHFPEFENDVEFTERLVAEQSVHCLPATCFEY------PNFIRVVIT 404 (427)
T ss_dssp EEEEECGGGCTTCSSHHHHHHHHHHHHCEECEEGGGGTC------TTEEEEESC
T ss_pred EEEecCHhhcCCCCCHHHHHHHHHHHCCEEEECCcccCC------CCeEEEEEC
Confidence 88877622 23457788888777999998765543 346999976
No 87
>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}
Probab=99.85 E-value=5.2e-20 Score=218.71 Aligned_cols=308 Identities=13% Similarity=0.100 Sum_probs=212.9
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
++.+.+..+.+. .++.+.+++.+.+... . ..|+...+..++++++.+++...+|.+ +.+++++||++|
T Consensus 29 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~-~------~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a 101 (370)
T 2z61_A 29 KKVIHLEIGEPDFNTPKPIVDEGIKSLKEG-K------THYTDSRGILELREKISELYKDKYKADIIPDNIIITGGSSLG 101 (370)
T ss_dssp CCCEECCCCSCSSCCCHHHHHHHHHHHHTT-C------CSCCCTTCCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHH
T ss_pred CCEEEccCCCCCCCCCHHHHHHHHHHHHcC-c------cCCCCCCCCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHH
Confidence 456777777654 3566888888877531 1 123333445688887777777766532 456666699999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
+..++.+++++||+|++..+.|++ ....+...|. +++.++ +|++++++.+++ ++++++++++++| .
T Consensus 102 ~~~~~~~~~~~gd~vl~~~p~~~~---~~~~~~~~g~--~~~~v~------~d~~~l~~~l~~-~~~~v~~~~p~nptG~ 169 (370)
T 2z61_A 102 LFFALSSIIDDGDEVLIQNPCYPC---YKNFIRFLGA--KPVFCD------FTVESLEEALSD-KTKAIIINSPSNPLGE 169 (370)
T ss_dssp HHHHHHHHCCTTCEEEEESSCCTH---HHHHHHHTTC--EEEEEC------SSHHHHHHHCCS-SEEEEEEESSCTTTCC
T ss_pred HHHHHHHhcCCCCEEEEeCCCchh---HHHHHHHcCC--EEEEeC------CCHHHHHHhccc-CceEEEEcCCCCCcCc
Confidence 999999999999999987765544 3444556676 444444 589999998865 4566666666655 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC-----CCCcEEEecCCccCCCCCe---eEEEEechhHHHHhh
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV-----PFADFITSTTHKSLRGPRG---GFILMKKKYKKIINS 251 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l-----~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~ 251 (1342)
..+.+ |.++|++||++||+||+|+.+.+.+ ...+.. ...|++++|+||++ |+.| ||+++++++++.+..
T Consensus 170 ~~~~~-l~~~~~~~~~~li~De~~~~~~~~g-~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~~~ 246 (370)
T 2z61_A 170 VIDRE-IYEFAYENIPYIISDEIYNGLVYEG-KCYSAIEFDENLEKTILINGFSKLY-AMTGWRIGYVISNDEIIEAILK 246 (370)
T ss_dssp CCCHH-HHHHHHHHCSEEEEECTTTTCBSSS-CCCCGGGTCTTCSSEEEEEESTTTT-TCGGGCCEEEECCHHHHHHHHH
T ss_pred ccCHH-HHHHHHHcCCEEEEEcchhhcccCC-CCcCHHHccCCCCcEEEEecChhcc-CCccceEEEEEECHHHHHHHHH
Confidence 45888 9999999999999999998765432 222211 13589999999999 6555 999999998888766
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
....+.+ +++.+.+.++..++......++++.++++.++++++.+.|.+.|+++.. +.+++++|+.++. ...++..
T Consensus 247 ~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~~~~~--~~~~~~~ 322 (370)
T 2z61_A 247 LQQNLFI-SAPTISQYAALKAFEKETEREINSMIKEFDRRRRLVLKYVKDFGWEVNN-PIGAYYVFPNIGE--DGREFAY 322 (370)
T ss_dssp HHHHHTS-SSCHHHHHHHGGGGSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCCC-CCBTTEECCBCSS--CHHHHHH
T ss_pred HHhhccc-CCCHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHcCCeecC-CCcceEEEEecCC--CHHHHHH
Confidence 4333322 3344555554444432123467778889999999999999988877643 4556788888765 3456777
Q ss_pred HHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 332 SILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+++++||.+.++..++.. ..+++|++++
T Consensus 323 ~l~~~~gi~v~~g~~f~~~----~~~~~Ri~~~ 351 (370)
T 2z61_A 323 KLLKEKFVALTPGIGFGSK----GKNYIRISYA 351 (370)
T ss_dssp HHHHHHCEECEEGGGGCGG----GSSBEEEECC
T ss_pred HHHHhCCEEEeCchhhCCC----CCCEEEEEEe
Confidence 7775679999987544321 1457999988
No 88
>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}
Probab=99.85 E-value=7.3e-20 Score=216.15 Aligned_cols=313 Identities=11% Similarity=0.048 Sum_probs=214.4
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~a 105 (1342)
+.+.+.+++..+++.+++++.+++.+.. .++. ...+...++.+.+++++++++|.+ +.+++++||++|+..+
T Consensus 4 ~~~~~~p~p~~~~~~v~~~~~~~~~~~~-~~~~-----~~~~~~~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~ 77 (362)
T 3ffr_A 4 NKIYFTPGPSELYPTVRQHMITALDEKI-GVIS-----HRSKKFEEVYKTASDNLKTLLELPSNYEVLFLASATEIWERI 77 (362)
T ss_dssp CCEEECSSSCCCCTTHHHHHHHHHHTTT-TTSC-----TTSHHHHHHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHH
T ss_pred cceeccCCCcCCCHHHHHHHHHHhcCCc-cCcC-----CCCHHHHHHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHH
Confidence 4577888888899999999888875322 0111 122334466777888999999874 4566666999999999
Q ss_pred HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCH
Q psy13354 106 FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDF 183 (1342)
Q Consensus 106 l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l 183 (1342)
+.++..| .+++....+.++ .........|. +++.++.++++.+|+++++ ++ .+++++++++++++ ...++
T Consensus 78 ~~~l~~~--~~i~~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~--~~-~~~~~v~~~~~~nptG~~~~l 149 (362)
T 3ffr_A 78 IQNCVEK--KSFHCVNGSFSK-RFYEFAGELGR--EAYKEEAAFGKGFYPADIT--VP-ADAEIICLTHNETSSGVSMPV 149 (362)
T ss_dssp HHHHCSS--EEEEEECSHHHH-HHHHHHHHTTC--EEEEEECCTTCCCCGGGCC--CC-TTCCEEEEESEETTTTEECCH
T ss_pred HHhccCC--cEEEEcCcHHHH-HHHHHHHHhCC--CeEEEecCCCCCCCHHHHh--cc-CCccEEEEEcCCCCcceeCCH
Confidence 9999988 444433222121 11224455676 4445566667889999988 33 35566666665555 45599
Q ss_pred HHHHHHHHHc-CCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC-------
Q psy13354 184 ERFYHIAKNI-NSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF------- 254 (1342)
Q Consensus 184 ~~I~~la~~~-gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~------- 254 (1342)
++|+++|++| |++||+|++|+.+.... ....+|++++|+||+++|+.| |++++++++++.+.....
T Consensus 150 ~~i~~la~~~p~~~li~D~a~~~~~~~~-----~~~~~d~~~~s~~K~~~~~~G~g~~~~~~~~~~~~~~~~~gg~~~~~ 224 (362)
T 3ffr_A 150 EDINTFRDKNKDALIFVDAVSSLPYPKF-----DWTKIDSVFFSVQKCFGLPAGLGVWILNDRVIEKSKALLAKRKSIGT 224 (362)
T ss_dssp HHHTTSGGGSTTSEEEEECTTTTTSSCC-----CTTSCSEEEEETTSTTCCCSCCEEEEEEHHHHHHHHHHHHTTCCCCS
T ss_pred HHHHHHHHhCCCCEEEEecccccCCccc-----ChhHCcEEEEecccccCCCCceEEEEECHHHHHHhhhccccCCCCcc
Confidence 9999999999 99999999998764311 122279999999999966888 999999988777654321
Q ss_pred -------------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC---CCCeEEE
Q psy13354 255 -------------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG---TKSHIIL 317 (1342)
Q Consensus 255 -------------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~---~~~~~v~ 317 (1342)
....++++...+.++..++......+++++.+++.++++++.+.|.+. |+++..+. ....++|
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~ 304 (362)
T 3ffr_A 225 YHTIPSMLEKARVNQTPETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESSKVFSFGVEDAKLRSMTTIV 304 (362)
T ss_dssp TTSHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCSSEEESSSCGGGBCSSEEE
T ss_pred cccHHHHHHHhhcCCCCCCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHccCceeccCChhhcCCceEE
Confidence 111345555666666666554443357888999999999999999997 88875421 2356788
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+++ ...++...+.++ ||.+.++..+. ..+++|++++..++
T Consensus 305 ~~~~~--~~~~~~~~l~~~-gi~~~~g~~~~------~~~~iRis~~~~~~ 346 (362)
T 3ffr_A 305 ANTTM--LPGEINKILEPF-DMAVGAGYGSK------KETQIRIANFPAHS 346 (362)
T ss_dssp EEESS--CHHHHHHHHGGG-TEEEEECSGGG------TTTEEEEECCTTSC
T ss_pred EecCC--CHHHHHHHHHHC-CeEEecCcccc------CCCEEEEECCCCCC
Confidence 88776 345566666555 99998753221 23579999988654
No 89
>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*
Probab=99.85 E-value=4.2e-20 Score=224.44 Aligned_cols=320 Identities=11% Similarity=0.042 Sum_probs=209.0
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.|+.++.. .++.+++++.+.+.. +..+.. ...|+...+..++++++++++.+.++.+ +.+++++|+++++..
T Consensus 57 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~~~-~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~ 134 (432)
T 3ei9_A 57 QVISLGIGDTTEPIPEVITSAMAKKAHE-LSTIEG-YSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISR 134 (432)
T ss_dssp CCEECSSCCCCSCCCHHHHHHHHHHHHH-TTSTTT-CCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHH
T ss_pred CeEEccCCCCCCCCCHHHHHHHHHHHhc-ccccCC-ccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHH
Confidence 45778777543 456699999888753 221111 1234444556788886666665444555 566777688888876
Q ss_pred HHHHccCCCCEEEEeeccCCccchhhHHhhhCC---------ceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCC
Q psy13354 105 VFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSG---------KWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGAS 175 (1342)
Q Consensus 105 al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g---------~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s 175 (1342)
+.++++|||+|++..+.|+++..........+ ..+..++++.+.++..|++. ..++++++++++
T Consensus 135 -l~~l~~~gd~Vl~~~p~y~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~------~~~~~~v~l~~p 207 (432)
T 3ei9_A 135 -LQVMFGSNVTIAVQDPSYPAYVDSSVIMGQTGQFNTDVQKYGNIEYMRCTPENGFFPDLST------VGRTDIIFFCSP 207 (432)
T ss_dssp -HHHHHCTTCCEEEEESCCTHHHHHHHHHTCSCCEETTTTEETTCEEEECCGGGTTSCCGGG------CCCCSEEEEESS
T ss_pred -HHHHcCCCCEEEEeCCCCHHHHHHHHHcCCcccccccccccCceEEeccCcccCCcCChhh------CCCCCEEEEeCC
Confidence 57788999999988877766544443333222 22334433222234445432 234566666666
Q ss_pred CCC-c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEEEe
Q psy13354 176 AYS-Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFILMK 242 (1342)
Q Consensus 176 ~~~-~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv~~ 242 (1342)
+|| + . .++++|+++|++||++||+||+|+.+.++. ...+... ..+++++|+||+| |+.| ||++++
T Consensus 208 ~NPtG~~~~~~~l~~l~~la~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~r~G~~~~~ 285 (432)
T 3ei9_A 208 NNPTGAAATREQLTQLVEFAKKNGSIIVYDSAYAMYMSDD-NPRSIFEIPGAEEVAMETASFSNYA-GFTGVRLGWTVIP 285 (432)
T ss_dssp CTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSS-CCSSGGGSTTGGGTEEEEEESHHHH-CTTTTCCEEEECC
T ss_pred CCCCCCCCCHHHHHHHHHHHHHcCcEEEEccchHhhccCC-CCCChhhcCCCCCeEEEEecchhcc-CCcccceEEEEEC
Confidence 666 2 2 258888999999999999999998654432 1111111 2358899999999 6666 999999
Q ss_pred chh--------HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCe
Q psy13354 243 KKY--------KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSH 314 (1342)
Q Consensus 243 ~~l--------~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~ 314 (1342)
+++ .+.+..... ..+++++.+.+.++..++.+...+++++.++++.++++++.+.|.+.|+.+.. +..++
T Consensus 286 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~ 363 (432)
T 3ei9_A 286 KKLLYSDGFPVAKDFNRIIC-TCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSLGYDVYG-GKNAP 363 (432)
T ss_dssp TTCBCTTSCBHHHHHHHHHH-HSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEE-CSSSS
T ss_pred hHHhhcchHHHHHHHHHHhc-cccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHCCceecC-CCcce
Confidence 887 566654321 22334445566655555433222467788899999999999999999988754 35678
Q ss_pred EEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 315 IILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 315 ~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++|+.++. ..+.+++..+++++||.+.++..++.. +.+++|+++..
T Consensus 364 ~~~~~~~~-~~~~~~~~~ll~~~gv~v~~g~~f~~~----~~~~iRis~~~ 409 (432)
T 3ei9_A 364 YVWVHFPN-QSSWDVFAEILEKTHVVTTPGSGFGPG----GEGFVRVSAFG 409 (432)
T ss_dssp EEEEECTT-SCHHHHHHHHHHHHCEECEEGGGGCGG----GTTEEEEECCS
T ss_pred EEEEECCC-CCHHHHHHHHHHHCCEEEeCchHhCCC----CCCEEEEEecC
Confidence 89999983 335678888888889999987665522 24679999743
No 90
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*
Probab=99.85 E-value=5.3e-20 Score=223.83 Aligned_cols=323 Identities=13% Similarity=0.085 Sum_probs=208.4
Q ss_pred ceeeeecCCCCcHH-HHHHHhHHHHhcccc---CCCCC---CccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecC
Q psy13354 29 NIELIASENYTSLA-VMEAQGTLLTNKYAE---GYPGK---RYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPH 96 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-v~eal~~~l~~~~~~---g~~~~---~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~ 96 (1342)
.|.+..++|.++.+ +.+++.+... .... |...+ ..|+...+..++++++++++.+..+ .+ +.+++++
T Consensus 40 ~i~lg~~~~~~~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~~y~~~~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~ 118 (435)
T 3piu_A 40 IIQMGLAENQLCFDLLESWLAKNPE-AAAFKKNGESIFAELALFQDYHGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTA 118 (435)
T ss_dssp BEECSSCCCCSSHHHHHHHHHHCTT-GGGTEETTEECHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEE
T ss_pred eEEeccccccccHHHHHHHHHhCcc-ccccccccccccccccccCCCCCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcC
Confidence 46777788887765 4444433221 1100 00000 1244445556888877776665544 22 4555555
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhh-hCCceeEEEEecCC--CCCCCCHHHHHHHHHh-----cCCe
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLN-MSGKWFNSICYGLN--KKEKIDYKKVEYLAKK-----NKPK 168 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~-~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~-----~~~~ 168 (1342)
||++|+..++.+++++||.|++..+.|+++ ...+. ..|. ++++++.+ .++.+|++++++++++ .+++
T Consensus 119 gg~~a~~~~~~~l~~~gd~vl~~~p~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~ 193 (435)
T 3piu_A 119 GATSANETFIFCLADPGEAVLIPTPYYPGF---DRDLKWRTGV--EIVPIHCTSSNGFQITETALEEAYQEAEKRNLRVK 193 (435)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCTTH---HHHTTTTTCC--EEEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEE
T ss_pred ChHHHHHHHHHHhcCCCCeEEECCCccccH---HHHHHHhcCC--EEEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeE
Confidence 999999999999999999999877665543 33334 4566 44555554 3567899999999876 2556
Q ss_pred EEEEcCCCCC--cc---cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--------------CCCcEEEecCCc
Q psy13354 169 LIIAGASAYS--QY---IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--------------PFADFITSTTHK 229 (1342)
Q Consensus 169 liv~~~s~~~--~~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--------------~~~Divv~S~sK 229 (1342)
+|+++++++| .. .++++|+++|++||++||+||+|+.+.+....+.... ....++++|+||
T Consensus 194 ~v~i~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK 273 (435)
T 3piu_A 194 GVLVTNPSNPLGTTMTRNELYLLLSFVEDKGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSK 273 (435)
T ss_dssp EEEEESSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSS
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeec
Confidence 6666666665 22 2578999999999999999999987655433222111 112388999999
Q ss_pred cCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHH--hccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 230 SLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE--VLKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~--~l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
++ |+.| ||++++ +.+.+.+......+ +.+.+.+.+++..+.. ....+.++.++++.++++++.+.|.+.|
T Consensus 274 ~~-g~~G~r~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g 349 (435)
T 3piu_A 274 DL-GLPGFRVGAIYSNDDMVVAAATKMSSFG---LVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKSG 349 (435)
T ss_dssp SS-CCGGGCEEEEEESCHHHHHHHHHHGGGS---CCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cc-CCCceeEEEEEeCCHHHHHHHHHHhhcC---CCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99 6555 999995 56666665532222 2223334433333321 1123456778889999999999999989
Q ss_pred cEEeeCCCCCeEEEEEccCCC------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 304 IRIVSGGTKSHIILVDLRNKK------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 304 ~~~~~~~~~~~~v~i~~~~~~------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+++.. +.+++++|+.++... ...++...+++++||.+.++..+.... ++++|++++..
T Consensus 350 ~~~~~-~~~g~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~~~~~~----~~~iRi~~~~~ 413 (435)
T 3piu_A 350 ISCLN-GNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYEVHLNISPGSSCHCTE----PGWFRVCFANL 413 (435)
T ss_dssp CEECC-CCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS----TTEEEEECSSS
T ss_pred CcccC-CCeeEEEEEEcccccccCCchhHHHHHHHHHHHCCEEEeCCcccCCCC----CCEEEEEeeCC
Confidence 88754 455689999987632 234677777777799999876544322 46799998654
No 91
>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}
Probab=99.85 E-value=2.3e-19 Score=221.98 Aligned_cols=314 Identities=11% Similarity=0.026 Sum_probs=211.0
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHcc-CCCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVL-NPGD 114 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~-~pGD 114 (1342)
+|+.+++++.+.+.. .. ......|....+..++++++++++.+..|.+ +.+++++||++|+..++.+++ .+||
T Consensus 107 ~p~~~~~~a~~~l~~-~~--~~~~~~Y~~~~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~~~~gd 183 (500)
T 3tcm_A 107 FSADSISRAKQILAM-IP--GRATGAYSHSQGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLIRNEKD 183 (500)
T ss_dssp SCHHHHHHHHHHHTT-ST--TSCSSSCCCTTCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHCCSTTE
T ss_pred CCHHHHHHHHHHHHc-CC--CCcCCCcCCCcChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHcCCCCC
Confidence 455566665555532 10 1123345566667789998888888777743 455666599999999999998 8999
Q ss_pred EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC-c----ccCHH
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS-Q----YIDFE 184 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~-~----~~~l~ 184 (1342)
+|+++.+.|+ .+...+...|..+..++++.+.+|.+|++++++.+++. +++++++++++|| + ..+++
T Consensus 184 ~Vlv~~p~y~---~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~s~~~l~ 260 (500)
T 3tcm_A 184 GILVPIPQYP---LYSASIALHGGALVPYYLNESTGWGLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVLAEENQY 260 (500)
T ss_dssp EEEEEESCCT---HHHHHHHHTTCEEEEEECBTTTTSBCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCCCHHHHH
T ss_pred EEEEeCCCcH---hHHHHHHHcCCEEEEEecccccCCCCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccCCHHHHH
Confidence 9998875554 44455566777555554443345789999999999863 4556665566666 2 23588
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcC-CCCCC----------CCCC-cEEEecCCccCCCCCe---eEEEE---echhH
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNP----------VPFA-DFITSTTHKSLRGPRG---GFILM---KKKYK 246 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~----------l~~~-Divv~S~sK~l~gp~G---G~iv~---~~~l~ 246 (1342)
+|+++|++||++||+|++|..+.+..+ .+.+. .+.. .++++|+||+|.|+.| ||+++ +++++
T Consensus 261 ~i~~la~~~~~~li~Deay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~R~G~~~~~~~~~~~~ 340 (500)
T 3tcm_A 261 DIVKFCKNEGLVLLADEVYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGKRGGYFEITGFSAPVR 340 (500)
T ss_dssp HHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGGCCEEEEEESCCTTHH
T ss_pred HHHHHHHHcCCEEEEecCccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCccceEEEEEeCCCHHHH
Confidence 889999999999999999987665432 22211 1111 3678899999844444 99998 88888
Q ss_pred HHHhhccCCccccCCcHHHHHHHHHHHHH---------hccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEE
Q psy13354 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKE---------VLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHII 316 (1342)
Q Consensus 247 ~~l~~~~~~~~~~~~~~~~~~Aaa~al~~---------~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v 316 (1342)
+.+..... ...+++.+.+.++..++.. ....+.+.+++++.++++++.+.|.+. |+.+.. +.+++++
T Consensus 341 ~~l~~~~~--~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~-~~g~~~~ 417 (500)
T 3tcm_A 341 EQIYKIAS--VNLCSNITGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKLEGITCNE-AEGAMYV 417 (500)
T ss_dssp HHHHHHHH--TTCCCCHHHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-CCBTTEE
T ss_pred HHHHHHHh--cccCCCHHHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcEEec-CCeEEEE
Confidence 88766432 2334455566655544421 111255677888999999999999987 887643 5667788
Q ss_pred EEEccCCC------------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 317 LVDLRNKK------------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 317 ~i~~~~~~------------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
|+.+.-+. .+..++..+++++||.+.++..|+...+ .+++|++++
T Consensus 418 ~~~~~lp~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g---~~~iRis~~ 474 (500)
T 3tcm_A 418 FPQICLPQKAIEAAKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPG---TWHFRCTIL 474 (500)
T ss_dssp CCEECCCHHHHHHHHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTT---CCBEEEESC
T ss_pred eeeecCchhhHHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCC---CCEEEEEEC
Confidence 86553211 1223356788888999999887765332 467999998
No 92
>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A
Probab=99.84 E-value=8.6e-19 Score=208.22 Aligned_cols=305 Identities=12% Similarity=0.080 Sum_probs=210.2
Q ss_pred ceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHHHHH
Q psy13354 29 NIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~A~~ 103 (1342)
.+.+..+++. .++.+.+++.+.+.... .. ...|+.... .++++++++++.+.+|. + +.+++++||++|+.
T Consensus 32 ~idl~~~~~~~~~~~~v~~a~~~~~~~~~-~~---~~~y~~~~~-~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~ 106 (369)
T 3cq5_A 32 DIRLNTNENPYPPSEALVADLVATVDKIA-TE---LNRYPERDA-VELRDELAAYITKQTGVAVTRDNLWAANGSNEILQ 106 (369)
T ss_dssp SEECSSCCCCSCCCHHHHHHHHHHHHHHG-GG---TTSCCCTTC-HHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHH
T ss_pred ceeccCCCCCCCCCHHHHHHHHHHHHhcc-cc---cccCCCccH-HHHHHHHHHhhhhcccCCCChHhEEECCChHHHHH
Confidence 3777777764 34569999888875321 00 111222223 47888777777776553 3 56677757788999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
.++.+++++||+|++....|+++ ...+...|. +++.++.++++.+|++++++.+++.++++++++++++| ...
T Consensus 107 ~~~~~l~~~gd~Vl~~~~~y~~~---~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~nptG~~~ 181 (369)
T 3cq5_A 107 QLLQAFGGPGRTALGFQPSYSMH---PILAKGTHT--EFIAVSRGADFRIDMDVALEEIRAKQPDIVFVTTPNNPTGDVT 181 (369)
T ss_dssp HHHHHHCSTTCEEEEEESSCTHH---HHHHHHTTC--EEEEEECCTTSSCCHHHHHHHHHHHCCSEEEEESSCTTTCCCC
T ss_pred HHHHHhcCCCCEEEEcCCChHHH---HHHHHHcCC--EEEEecCCcCCCCCHHHHHHHhhccCCCEEEEeCCCCCCCCCC
Confidence 99999999999999888665543 444556676 44555666677899999999998645666666666665 445
Q ss_pred CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--C-CcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--F-ADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~-~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
+.+++.++|+.++++||+||+|+.+... .......+ . .+++++|+||++ |+.| ||+++++++++.+......
T Consensus 182 ~~~~l~~l~~~~~~~li~De~~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~l~~~~~~ 259 (369)
T 3cq5_A 182 SLDDVERIINVAPGIVIVDEAYAEFSPS-PSATTLLEKYPTKLVVSRTMSKAF-DFAGGRLGYFVANPAFIDAVMLVRLP 259 (369)
T ss_dssp CHHHHHHHHHHCSSEEEEECTTGGGCCS-CCGGGGTTTCTTTEEEEEESSSTT-SCGGGCCEEEEECTHHHHHHHTTSCT
T ss_pred CHHHHHHHHHhCCCEEEEECCchhhcCC-cchHHHHhhCCCCEEEEEechHhc-CCcccceEEEEeCHHHHHHHHHcCCC
Confidence 9999999999999999999999866532 11011111 1 358899999999 5556 9999999998888765443
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+ +++...+.++..++.. . +++++.++++.++++++.+.|.+.|+.+.. ..++++|+.++ ....++...+ .
T Consensus 260 ~---~~~~~~~~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~--~~~~~l~~~l-~ 329 (369)
T 3cq5_A 260 Y---HLSALSQAAAIVALRH-S-ADTLGTVEKLSVERVRVAARLEELGYAVVP--SESNFVFFGDF--SDQHAAWQAF-L 329 (369)
T ss_dssp T---CSCHHHHHHHHHHHHT-H-HHHHTHHHHHHHHHHHHHHHHHHHTCEEEC--CSSSEEEEECC--SSHHHHHHHH-H
T ss_pred C---CCCHHHHHHHHHHhcC-H-HHHHHHHHHHHHHHHHHHHHHHhCCCEECC--CCCeEEEEECC--CCHHHHHHHH-H
Confidence 3 2334445544444433 2 366778889999999999999988888753 45678888876 2234555555 5
Q ss_pred HCCceeeeccCCCCCCCcccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++||.+.++ + . .+++|++++
T Consensus 330 ~~gi~v~~~---~---~---~~~iRis~~ 349 (369)
T 3cq5_A 330 DRGVLIRDV---G---I---AGHLRTTIG 349 (369)
T ss_dssp HTTEECBCC---S---C---TTEEEEECC
T ss_pred HCCEEEEEC---C---C---CCeEEEEeC
Confidence 679999865 1 1 356999987
No 93
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Probab=99.84 E-value=1.2e-20 Score=224.01 Aligned_cols=308 Identities=12% Similarity=0.069 Sum_probs=200.2
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCC--CCCccCCcchHHHHHHHHHHH-HHHHhCCCCceEecCCHHHHHHHHHHHccCC
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYP--GKRYYGGCKFIDLIEKIAINR-LKKIFNAEAANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~--~~~~~~~~~~~~~Le~~~~~~-la~~~g~~~~vi~~~sGs~A~~~al~al~~p 112 (1342)
....++.+.+++.+.+......++. ....+.......++++ + +++++|.+ .+++++||++|+..++.+++++
T Consensus 18 ~~~~~~~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~la~~~~~~-~v~~~~g~t~a~~~~~~~~~~~ 92 (371)
T 2e7j_A 18 GGKLTEEARQALLEWGDGYSVCDFCTTGRLDEIKTPPIHDFIH----NQLPKFLGCD-VARVTNGAREAKFAVMHSLAKK 92 (371)
T ss_dssp TCCCCHHHHHHHHHC--------------------CCHHHHHH----THHHHHTTSS-EEEEESSHHHHHHHHHHHHCCT
T ss_pred CCCCCHHHHHHHHHHHhhcccCCccccccchhhHHHHHHHHHH----HHHHHHcCCC-EEEEeCChHHHHHHHHHHHhCC
Confidence 5667888999988776432110111 1111223344445555 8 99999988 7777768899999999999999
Q ss_pred CCEEEEeeccCCccchhhHHhhhCCceeEEEEec--CCCCCCCCHHHHHHHHHh----cCCeEEEEcCCCCC--cccCHH
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG--LNKKEKIDYKKVEYLAKK----NKPKLIIAGASAYS--QYIDFE 184 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~--~~~~~~id~e~Le~~i~~----~~~~liv~~~s~~~--~~~~l~ 184 (1342)
||+|+++...|+ +....+...|. +++.++ .++++.+|++++++.+++ .+++++++++++++ ...+++
T Consensus 93 gd~vl~~~~~~~---~~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~~~ 167 (371)
T 2e7j_A 93 DAWVVMDENCHY---SSYVAAERAGL--NIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVK 167 (371)
T ss_dssp TCEEEEETTCCH---HHHHHHHHTTC--EEEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCCHH
T ss_pred CCEEEEccCcch---HHHHHHHHcCC--eEEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCCHH
Confidence 999997775554 44444566777 445555 677788999999999974 35677777666555 445899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHH-HhhccCCcc----
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKI-INSAVFPGI---- 257 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~-l~~~~~~~~---- 257 (1342)
+|.++|++||++||+|++|+.|... ..... ..|++++|+||+++++.+ |++++++++++. +......+.
T Consensus 168 ~i~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~~di~~~s~sK~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (371)
T 2e7j_A 168 KIAKVCSEYDVPLLVNGAYAIGRMP----VSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVE 243 (371)
T ss_dssp HHHHHHHTTTCCEEEECTTTBTTBC----CCHHHHTCSEEEEEHHHHSSCCSSCEEEEECTTTTTTTTCBCSSCTTSBGG
T ss_pred HHHHHHHHcCCeEEEECccccCCCC----CChhhcCCCEEEecCCcCCCCCCCcEEEEEechhhhhhccccccCcccccc
Confidence 9999999999999999999876541 11111 268999999999966656 999999988776 655333222
Q ss_pred --ccCCcHHHHHHHHHHHHHhccchHHHHHHHH--HHHHHHHHHHHHhCCcEEeeCCC-CCeEEEEEccCCCCCHHHHHH
Q psy13354 258 --QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV--VKNAKILSKILDQRGIRIVSGGT-KSHIILVDLRNKKITGKIAES 332 (1342)
Q Consensus 258 --~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l--~~~a~~l~~~L~~~g~~~~~~~~-~~~~v~i~~~~~~~~~~~~~~ 332 (1342)
.++++....+++..++. ... . .+.+++ .++++++.+.|.+.|+++..+.. .++++|+.++ ...++...
T Consensus 244 ~~~~~~~~~~~~a~~~~l~-~~~-~--~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ 316 (371)
T 2e7j_A 244 LLGCTARGATIITLMASFP-HVR-E--RIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLMFFHAE---VLYEISKK 316 (371)
T ss_dssp GTTCCCCSHHHHHHHHHHH-HHH-H--HGGGHHHHHHHHHHHHHHHHHTTCEEESSSSCCSSEEEEECH---HHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHH-HHH-H--HHHHHHHHHHHHHHHHHHHHHcCcEEecCCCccCceEEEECC---CHHHHHHH
Confidence 23333333444333333 322 1 456777 88999999999988888764321 3678899886 23445555
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccc-cccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIR-LGSSAI 366 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lR-i~~~~~ 366 (1342)
+. ++||.+.+ ..+.........+.+| ++++..
T Consensus 317 l~-~~gi~~~~-~~~~~~~~g~~~~~iRii~~~~~ 349 (371)
T 2e7j_A 317 AK-GGRFFLYR-ELKSRKIHGIKPGLTRYFKLSTY 349 (371)
T ss_dssp SS-SGGGHHHH-HHHHTTEECSCTTCCSEEEEECT
T ss_pred HH-HCCEEEEe-ccccccccCCCCCceEEEEeecc
Confidence 55 66999986 3221100000135699 998875
No 94
>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*
Probab=99.84 E-value=4.7e-20 Score=220.27 Aligned_cols=321 Identities=14% Similarity=0.113 Sum_probs=212.1
Q ss_pred CceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCC-CccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGK-RYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~-~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.+.+..+. ...++.+++++.+.+..... ..+.+ ..|.. .......+++.+++++|.+ +.+++++||++|+..
T Consensus 16 ~~i~l~~~~~~~~~~~v~~a~~~~~~~~~~-~~~~~~~~y~~---~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~ 91 (390)
T 1elu_A 16 NKTYFNFGGQGILPTVALEAITAMYGYLQE-NGPFSIAANQH---IQQLIAQLRQALAETFNVDPNTITITDNVTTGCDI 91 (390)
T ss_dssp TSEECCTTTCCCCCHHHHHHHHHHHHHHHH-HCSSSHHHHHH---HHHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHH
T ss_pred CeEEecCCccCCCCHHHHHHHHHHHHHHhc-cCCcchhhHHH---HHHHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHH
Confidence 345555444 34556699998888753221 11110 01111 1134455666999999987 456666699999999
Q ss_pred HHHHc-cCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 105 VFFSV-LNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 105 al~al-~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
++.++ +.+||+|+++...|+++...+ ......|. +++.++.+ +++.+|++++++.+++ +++++++++++++
T Consensus 92 ~~~~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG 168 (390)
T 1elu_A 92 VLWGLDWHQGDEILLTDCEHPGIIAIVQAIAARFGI--TYRFFPVAATLNQGDAAAVLANHLGP-KTRLVILSHLLWNTG 168 (390)
T ss_dssp HHHHSCCCTTCEEEEETTCCHHHHHHHHHHHHHHCC--EEEEECCGGGSSSSCHHHHHHTTCCT-TEEEEEEESBCTTTC
T ss_pred HHhCCCCCCCCEEEEecCcccHHHHHHHHHHHHhCc--EEEEEcCCCCCCccchHHHHHHhcCC-CceEEEEeccccCCc
Confidence 99999 899999998876665543322 22344566 44445554 5678999999988865 4566677666655
Q ss_pred cccCHHHHHHHHH----HcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc
Q psy13354 179 QYIDFERFYHIAK----NINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV 253 (1342)
Q Consensus 179 ~~~~l~~I~~la~----~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~ 253 (1342)
...++++|.++|+ +||++||+|++|+.|...... . ....|++++|+||++.|+.| |++++++++++.+....
T Consensus 169 ~~~~~~~i~~l~~~~~~~~~~~li~Dea~~~g~~~~~~--~-~~~~d~~~~s~~K~~~~~~g~G~~~~~~~~~~~~~~~~ 245 (390)
T 1elu_A 169 QVLPLAEIMAVCRRHQGNYPVRVLVDGAQSAGSLPLDF--S-RLEVDYYAFTGHKWFAGPAGVGGLYIHGDCLGEINPTY 245 (390)
T ss_dssp CBCCHHHHHHHHHHCCSSSCCEEEEECTTTBTTBCCCT--T-TSCCSEEEEESSSTTCCCTTCEEEEECTTTGGGCCCCS
T ss_pred eecCHHHHHHHHhhhhhhcCcEEEEEcccccCCcCCCh--h-hcCCCEEEccccccccCCCceEEEEECHHhHhhcCCcc
Confidence 4458999999999 999999999999876431110 0 11368999999997778888 99999998877665421
Q ss_pred C---------------------CccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-
Q psy13354 254 F---------------------PGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIRIVSG- 309 (1342)
Q Consensus 254 ~---------------------~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~- 309 (1342)
. .+..++++...+.++..++...... ++++..+++.++++++.+.|.+. |+++..+
T Consensus 246 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 325 (390)
T 1elu_A 246 VGWRSITYGAKGEPTGWAEGGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHVHCLATS 325 (390)
T ss_dssp CCTTTEEECTTSCEEEECSGGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTEEESCSS
T ss_pred ccCCcccccccCcccccccchHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhcCCcEEecCc
Confidence 1 1122344444455554444433222 47888999999999999999986 8887542
Q ss_pred CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 310 GTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 310 ~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+..++++++.++......++...+ .++||.+.++. ..+++|++++..++
T Consensus 326 ~~~~~~~~~~~~~~~~~~~~~~~l-~~~gi~v~~~~---------~~~~iRis~~~~~~ 374 (390)
T 1elu_A 326 APQAGLVSFTVDSPLGHRAIVQKL-EEQRIYLRTIA---------DPDCIRACCHYITD 374 (390)
T ss_dssp CCSSSEEEEEECSSSCHHHHHHHH-HHTTEECEEET---------TTTEEEEECCTTCC
T ss_pred cccccEEEEEcCCCCCHHHHHHHH-HHCCEEEEecC---------CCCeEEEecccCCC
Confidence 234566777775333334555555 56699998764 13569999866554
No 95
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}
Probab=99.84 E-value=2.5e-19 Score=214.06 Aligned_cols=308 Identities=19% Similarity=0.133 Sum_probs=204.3
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC-ceEecCCHHHHHHHHHHHccCC
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA-ANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~-~vi~~~sGs~A~~~al~al~~p 112 (1342)
......+|.+.+++.+.+...+ +.+ ...+...++++++++++++++|.+. .+++++||++|+..++.++..+
T Consensus 37 ~~~~~~~~~v~~a~~~~~~~~~--~~~-----~~~~~~~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~ 109 (397)
T 3f9t_A 37 SMCSNVLPITRKIVDIFLETNL--GDP-----GLFKGTKLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNI 109 (397)
T ss_dssp CSCCCCCTHHHHHHHHHTTCCT--TSG-----GGBHHHHHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHH
T ss_pred EecCCCcHHHHHHHHHHHhhcC--CCc-----ccChhHHHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHH
Confidence 3445566778888887764222 111 1123456788889999999999873 4456669999999999998765
Q ss_pred -------------CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 113 -------------GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 113 -------------GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
||+|++....|+ +....+...|. +++.++.++++.+|++++++.+++.+++++++++++++
T Consensus 110 ~~~~~~~~~~~~~gd~vl~~~~~~~---~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~npt 184 (397)
T 3f9t_A 110 WREKRRKGLSKNEHPKIIVPITAHF---SFEKGREMMDL--EYIYAPIKEDYTIDEKFVKDAVEDYDVDGIIGIAGTTEL 184 (397)
T ss_dssp HHHHHHTTCCCCSSCEEEEETTCCT---HHHHHHHHHTC--EEEEECBCTTSSBCHHHHHHHHHHSCCCEEEEEBSCTTT
T ss_pred HHhhhhhcccCCCCeEEEECCcchh---HHHHHHHHcCc--eeEEEeeCCCCcCCHHHHHHHHhhcCCeEEEEECCCCCC
Confidence 999997775554 44445555676 55666777788999999999998834444444444444
Q ss_pred -cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC-------CCCCC---CCcEEEecCCccCCCCCe-eEEEEech-h
Q psy13354 179 -QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY-------PNPVP---FADFITSTTHKSLRGPRG-GFILMKKK-Y 245 (1342)
Q Consensus 179 -~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~-------~~~l~---~~Divv~S~sK~l~gp~G-G~iv~~~~-l 245 (1342)
...++++|.++|++||++||+|++|+.+.+..... ..+++ .+|++++|+||+++++.+ |+++++++ +
T Consensus 185 G~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~~~~g~~~~~~~~~ 264 (397)
T 3f9t_A 185 GTIDNIEELSKIAKENNIYIHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGY 264 (397)
T ss_dssp CCBCCHHHHHHHHHHHTCEEEEECTTGGGTGGGCCGGGCCTTCCCCCSGGGTCSEEECCTTTTTCCCSSCEEEEESSGGG
T ss_pred CCCCCHHHHHHHHHHhCCeEEEEccccchhhhhcccccccccccccccccccCCeEEEccccccCCCCCceEEEEeCHHH
Confidence 44599999999999999999999998665432110 00111 468999999999955544 77777654 4
Q ss_pred HHHHhhccCCccc--------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 246 KKIINSAVFPGIQ--------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 246 ~~~l~~~~~~~~~--------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
.+.+... .++.. ++.......+..+++......++++..+++.++++++.+.|.+.|+++.. ++..++++
T Consensus 265 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~ 342 (397)
T 3f9t_A 265 KRYLDVD-APYLTETRQATILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVI-EPILNIVA 342 (397)
T ss_dssp GGGTCEE-CTTSSSSEECSSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBSS-CCSSSEEE
T ss_pred HHhhccC-CccccCCCccccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEc-CCCccEEE
Confidence 4443221 22211 11111122233333332333467778889999999999999998887544 34567788
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+..+. ..++...+++ +||.+.++.. ++++|++++..++
T Consensus 343 ~~~~~---~~~~~~~l~~-~gi~v~~~~~---------~~~~Ri~~~~~~~ 380 (397)
T 3f9t_A 343 IEDED---YKEVCKKLRD-RGIYVSVCNC---------VKALRIVVMPHIK 380 (397)
T ss_dssp EECTT---HHHHHHHHHH-TTCBCEECSS---------SSEEEEECCTTCC
T ss_pred EEeCC---HHHHHHHHHh-CCeEEeccCC---------CCEEEEEEcCCCC
Confidence 87654 3455555555 5999987532 2469999986655
No 96
>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*
Probab=99.84 E-value=1.7e-19 Score=214.65 Aligned_cols=282 Identities=13% Similarity=0.150 Sum_probs=195.5
Q ss_pred cCCcchHHHHHHHHHHHHHHHhC-CC-CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEE
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFN-AE-AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNS 142 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g-~~-~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~ 142 (1342)
|+...+..++++ .++++++ .+ +.+++++||++|+..++.++++|||+|++..+.|++ ....+...|..+..
T Consensus 59 y~~~~g~~~l~~----~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l~~~gd~Vl~~~~~~~~---~~~~~~~~g~~~~~ 131 (375)
T 3op7_A 59 YGWIEGSPAFKK----SVSQLYTGVKPEQILQTNGATGANLLVLYSLIEPGDHVISLYPTYQQ---LYDIPKSLGAEVDL 131 (375)
T ss_dssp SCCTTCCHHHHH----HHHTTSSSCCGGGEEEESHHHHHHHHHHHHHCCTTCEEEEEESSCTH---HHHHHHHTTCEEEE
T ss_pred CCCCCChHHHHH----HHHHHhccCChhhEEEcCChHHHHHHHHHHhcCCCCEEEEeCCCchh---HHHHHHHcCCEEEE
Confidence 333444556777 6777663 33 455555589999999999999999999987755544 44455667775555
Q ss_pred EEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC
Q psy13354 143 ICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV 217 (1342)
Q Consensus 143 v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l 217 (1342)
++++.+.++.+|++++++++++ ++++++++++++| ...+ +++|+++|++||++||+|++|+.+... ......
T Consensus 132 v~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~~~~~~~l~~i~~la~~~~~~li~De~~~~~~~~--~~~~~~ 208 (375)
T 3op7_A 132 WQIEEENGWLPDLEKLRQLIRP-TTKMICINNANNPTGAVMDRTYLEELVEIASEVGAYILSDEVYRSFSEL--DVPSII 208 (375)
T ss_dssp EEEEGGGTTEECHHHHHHHCCT-TCCEEEEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECCSCCCSSS--CCCCHH
T ss_pred EeccccCCCCCCHHHHHHhhcc-CCeEEEEcCCCCCCCCCCCHHHHHHHHHHHHHcCCEEEEEccccccccc--CCCchh
Confidence 5554345667899999999875 4556666566555 3336 999999999999999999998765432 111111
Q ss_pred --CCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q psy13354 218 --PFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNA 292 (1342)
Q Consensus 218 --~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a 292 (1342)
...+++++|+||++ |+.| ||+++++++++.+......+.+++ +...+.++..++ +....+.++.++++.+++
T Consensus 209 ~~~~~~i~~~s~sK~~-~~~G~r~G~v~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~~ 285 (375)
T 3op7_A 209 EVYDKGIAVNSLSKTY-SLPGIRIGWVAANHQVTDILRDYRDYTMICA-GVFDDLVAQLAL-AHYQEILERNRHILEENL 285 (375)
T ss_dssp HHCTTEEEEEESSSSS-SCGGGCCEEEECCHHHHHHHTTTGGGTTSCC-CHHHHHHHHHHH-HTHHHHHHHHHHHHHHHH
T ss_pred hhcCCEEEEeEChhhc-CCcccceEEEEeCHHHHHHHHHHHhhhccCC-CcHHHHHHHHHH-hccHHHHHHHHHHHHHHH
Confidence 12358899999999 5445 999999999998876544443333 333444444343 333346677788889999
Q ss_pred HHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 293 KILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 293 ~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+++.+.|.+. ++.+.. +.+++++|+.++......+++..+++++||.+.++..+.. .+++|++++..
T Consensus 286 ~~l~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~~~gi~v~~g~~~~~------~~~iRi~~~~~ 353 (375)
T 3op7_A 286 AILDQWIEEEPLVSYIR-PAVVSTSFVKIAVDMPMEDFCLQLLQEHGVLLVPGNRFER------DGYVRLGFACE 353 (375)
T ss_dssp HHHHHHHHHCTTEEECC-CSSSSCEEEEECCSSCHHHHHHHHHHHHCEECEEGGGGTC------TTEEEECCCSC
T ss_pred HHHHHHHhhCCCceEec-CCCeEEEeEEcCCCCCHHHHHHHHHHhCCEEEeChhhhCC------CCeEEEEecCC
Confidence 9999999885 666543 4556677877775555567788887778999998765543 24699998764
No 97
>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}
Probab=99.84 E-value=2.1e-19 Score=216.25 Aligned_cols=323 Identities=11% Similarity=0.077 Sum_probs=214.1
Q ss_pred ceeeeec-CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 29 NIELIAS-ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~a~-~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
.+.+..+ ....++.+++++.+.+...+ +++.+ .|..+........++++++++++|.+ +.+++++||++++..++
T Consensus 27 ~~~ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~ 103 (406)
T 3cai_A 27 WVHFDAPAGMLIPDSVATTVSTAFRRSG--ASTVG-AHPSARRSAAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLA 103 (406)
T ss_dssp CEECBGGGCCCCCHHHHHHHHHHHHHCC--SSSCS-SSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHH
T ss_pred eEEEeCCCcCCCCHHHHHHHHHHHHhcC--CCCCC-ccHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHH
Confidence 3444444 34677789999988885322 22221 22222223455566777999999987 56777779999999999
Q ss_pred HHc---cCCCCEEEEeeccCCccchhhHHh-hhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 107 FSV---LNPGDTIMGMSLQEGGHLTHGMML-NMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 107 ~al---~~pGD~Vlv~~~~~~~~~s~~~~~-~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
.++ +++||+|+++...+++....+..+ ...|. +++.++.+ +++.+|++++++.+++ ++++|++++++++ .
T Consensus 104 ~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~~~nptG~ 180 (406)
T 3cai_A 104 EASSSRAGLGYEVIVSRLDDEANIAPWLRAAHRYGA--KVKWAEVDIETGELPTWQWESLISK-STRLVAVNSASGTLGG 180 (406)
T ss_dssp HHTGGGGBTTCEEEEETTSCGGGTHHHHHHHHHHBC--EEEEECCCTTTCCCCGGGHHHHCCT-TEEEEEEESBCTTTCB
T ss_pred HHHhhccCCCCEEEEcCCccHHHHHHHHHHHHhcCC--eEEEEecCcccCCcCHHHHHHHhCC-CceEEEEeCCcCCccc
Confidence 887 789999998887776654433322 22455 55556666 6788999999998865 4566666665555 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCee-EEEEechhHHHHhhccCC-
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRGG-FILMKKKYKKIINSAVFP- 255 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~GG-~iv~~~~l~~~l~~~~~~- 255 (1342)
..++++|.++|+++|++||+|++|+.|.... .+. ..|++++|+||++ ||.+| ++++++++++.+......
T Consensus 181 ~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~d~~~~s~~K~~-g~~~G~~~~~~~~~~~~l~~~~~~~ 254 (406)
T 3cai_A 181 VTDLRAMTKLVHDVGALVVVDHSAAAPYRLL-----DIRETDADVVTVNAHAWG-GPPIGAMVFRDPSVMNSFGSVSTNP 254 (406)
T ss_dssp BCCCHHHHHHHHHTTCEEEEECTTTTTTCCC-----CHHHHCCSEEEEEGGGGT-SCSCEEEEESCHHHHHTSCCCCSCT
T ss_pred cCCHHHHHHHHHHcCCEEEEEcccccCCCCC-----CchhcCCCEEEeehhhhc-CCCcCeEEEEehHHHhhcCCcccCC
Confidence 5589999999999999999999998654311 111 2689999999998 56567 999999887776543211
Q ss_pred -------ccccCCcHHHHHHHHHHHHHhccc--------------hHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC-CC
Q psy13354 256 -------GIQGGPLMHVIAAKAVAFKEVLKP--------------DFKIYQKQVVKNAKILSKILDQR-GIRIVSGG-TK 312 (1342)
Q Consensus 256 -------~~~~~~~~~~~~Aaa~al~~~l~~--------------~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~-~~ 312 (1342)
+..++++.+...++..++...... ++++..+++.++++++.+.|.+. |+++..+. ..
T Consensus 255 ~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~ 334 (406)
T 3cai_A 255 YATGPARLEIGVHQFGLLAGVVASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRSLPLVMLIGRPEAQ 334 (406)
T ss_dssp TCCGGGGGCCSCCCHHHHHHHHHHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEEECCCCSSB
T ss_pred CCCccccccCCCccHHHHHHHHHHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhcCCCeEEcCCcccc
Confidence 113444455554544444333221 36778889999999999999986 77765421 12
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHCCceeeeccC------CCCCCCcccccccccccccccc
Q psy13354 313 SHIILVDLRNKKITGKIAESILESANIICNKNSI------PNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 313 ~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~------p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+++++.+++ ....++...+ .++||.+.++.. ++.+. ..+.+|++++..++
T Consensus 335 ~~~~~~~~~~-~~~~~~~~~L-~~~gi~v~~g~~~~~~~~~g~~~---~~~~iRis~~~~~t 391 (406)
T 3cai_A 335 IPVVSFAVHK-VPADRVVQRL-ADNGILAIANTGSRVLDVLGVND---VGGAVTVGLAHYST 391 (406)
T ss_dssp CSEEEEEETT-BCHHHHHHHH-HHTTEECEECCSCHHHHHHTTTT---TTCCEEEECCTTCC
T ss_pred CCEEEEEECC-cCHHHHHHHH-HHCCcEEecCChHHHHHHcCCCC---CCCeEEEEeecCCC
Confidence 4467777763 2233455544 557999987651 11111 13579999987655
No 98
>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}
Probab=99.84 E-value=2.9e-19 Score=215.03 Aligned_cols=323 Identities=15% Similarity=0.093 Sum_probs=210.7
Q ss_pred CceeeeecCC-C---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHH
Q psy13354 28 NNIELIASEN-Y---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQ 100 (1342)
Q Consensus 28 ~~i~l~a~~n-~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~ 100 (1342)
+.|.+..+.. . .++.+.+++.+.+.... .... |+...+..++++++++++.+.+|. + +.+++++||++
T Consensus 35 ~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~----~~~~-y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~ 109 (407)
T 2zc0_A 35 KLISLAAGDPDPELIPRAVLGEIAKEVLEKEP----KSVM-YTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTG 109 (407)
T ss_dssp CCEECCSCCCCTTTSCHHHHHHHHHHHHHHCG----GGGS-CCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHH
T ss_pred ceEeCCCCCCCchhCCHHHHHHHHHHHHhhcc----cccc-CCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHH
Confidence 5677765542 2 33458888888775321 0111 333345568888777777776683 3 55666658899
Q ss_pred HHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHH----h-cCCeEE-EEcC
Q psy13354 101 ANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAK----K-NKPKLI-IAGA 174 (1342)
Q Consensus 101 A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~----~-~~~~li-v~~~ 174 (1342)
|+..++.+++.+||+|++....+ ......+...|..+..+ +.++++ +|++++++.++ + .+++++ ++++
T Consensus 110 a~~~~~~~~~~~gd~vl~~~p~~---~~~~~~~~~~g~~~~~v--~~~~~~-~d~~~l~~~l~~~~~~~~~~~~v~~~~~ 183 (407)
T 2zc0_A 110 ALDLLGRVLIDPGDVVITENPSY---INTLLAFEQLGAKIEGV--PVDNDG-MRVDLLEEKIKELKAKGQKVKLIYTIPT 183 (407)
T ss_dssp HHHHHHHHHCCTTCEEEEEESCC---HHHHHHHHTTTCEEEEE--EEETTE-ECHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred HHHHHHHHhcCCCCEEEEeCCCh---HHHHHHHHHcCCEEEEc--ccCCCC-CCHHHHHHHHHhhhcccCCceEEEECCC
Confidence 99999999999999999777544 44445556667754444 444444 89999999987 4 245665 4555
Q ss_pred CCCC--cccCH---HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CC--CCcEEEecCCccCCCC--CeeEEEEec
Q psy13354 175 SAYS--QYIDF---ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VP--FADFITSTTHKSLRGP--RGGFILMKK 243 (1342)
Q Consensus 175 s~~~--~~~~l---~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~--~~Divv~S~sK~l~gp--~GG~iv~~~ 243 (1342)
+++| ...+. ++|+++|++||++||+|++|+.+.+........ ++ ..+++++|+||++ ++ .+||+++++
T Consensus 184 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~G~r~G~~~~~~ 262 (407)
T 2zc0_A 184 GQNPMGVTMSMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVL-GTGFRIGWIIAEG 262 (407)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTT-CTTSCCEEEECCH
T ss_pred CCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEccccccc-CCCcceEEEecCH
Confidence 5554 33354 599999999999999999998765432211111 11 1357899999999 43 249999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-cc-chHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LK-PDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~-~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+......+.+++ +...+.++..++... .. .+++..++++.++++++.+.|.+. ++.+.. +..++++|+.
T Consensus 263 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~-~~~~~~~~~~ 340 (407)
T 2zc0_A 263 EILKKVLMQKQPIDFCA-PAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHLPNAEFTK-PIAGMFVMFF 340 (407)
T ss_dssp HHHHHHHHHHTTTTSSS-CHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHCTTSCBCC-CSBSSEEEEE
T ss_pred HHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhCCCCEEec-CCCcEEEEEE
Confidence 98888876544444433 344444444333321 12 355667788889999999999874 565533 4567789999
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++......++...+++++||.+.++..+..... ..+++|++++..
T Consensus 341 ~~~~~~~~~l~~~l~~~~gi~v~~g~~~~~~~~--~~~~iRis~~~~ 385 (407)
T 2zc0_A 341 LPEGADGISFANELMEREGVVVVPGKPFYTDES--GKNAIRLNFSRP 385 (407)
T ss_dssp CSTTCCHHHHHHHHHHHTCEECBCSGGGCSSSC--CTTEEEEECSSS
T ss_pred cCCCCCHHHHHHHHHHhCCeEEECchhccCCCC--CCCeEEEEeCCC
Confidence 875433456677776666999988654432210 135799998765
No 99
>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.84 E-value=7.7e-20 Score=221.68 Aligned_cols=321 Identities=12% Similarity=0.060 Sum_probs=213.7
Q ss_pred cCceeeeecC-CC---CcHHHHHHHhHHHHhcc--ccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CC-CceEecC
Q psy13354 27 NNNIELIASE-NY---TSLAVMEAQGTLLTNKY--AEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AE-AANVQPH 96 (1342)
Q Consensus 27 ~~~i~l~a~~-n~---l~~~v~eal~~~l~~~~--~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~-~~vi~~~ 96 (1342)
.+.|.+..+. ++ .++.+.+++.+.+.... ..+ |+...+..++++++++++.+.+| .+ +.+++++
T Consensus 43 ~~~idl~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~------y~~~~g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~ 116 (425)
T 1vp4_A 43 KDAISFGGGVPDPETFPRKELAEIAKEIIEKEYHYTLQ------YSTTEGDPVLKQQILKLLERMYGITGLDEDNLIFTV 116 (425)
T ss_dssp TTCEECCCCSCCGGGSCHHHHHHHHHHHHHHSHHHHTS------CCCTTCCHHHHHHHHHHHHHHHCCCSCCGGGEEEEE
T ss_pred CCceeCCCCCCCcccCCHHHHHHHHHHHHhhcchhhcC------CCCCCCCHHHHHHHHHHHHhccCCCCCCcccEEEec
Confidence 3557776654 22 33458888888775311 112 22233456888877777776668 43 4566665
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh-------cCCeE
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK-------NKPKL 169 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~-------~~~~l 169 (1342)
||++|+..++.+++++||+|++..+.++ .....+...|..+..+ +.++++ +|++++++.+++ .++++
T Consensus 117 G~~~al~~~~~~l~~~gd~Vl~~~p~y~---~~~~~~~~~g~~~~~v--~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~ 190 (425)
T 1vp4_A 117 GSQQALDLIGKLFLDDESYCVLDDPAYL---GAINAFRQYLANFVVV--PLEDDG-MDLNVLERKLSEFDKNGKIKQVKF 190 (425)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEEESCCH---HHHHHHHTTTCEEEEE--EEETTE-ECHHHHHHHHHHHHHTTCGGGEEE
T ss_pred cHHHHHHHHHHHhCCCCCEEEEeCCCcH---HHHHHHHHcCCEEEEe--ccCCCC-CCHHHHHHHHHhhhhcccCCCceE
Confidence 8888999999999999999998775544 4444556667744444 444444 899999998876 24566
Q ss_pred E-EEcCCCCC-c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC----CCCcEEEecCCccCCCCCe---
Q psy13354 170 I-IAGASAYS-Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV----PFADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 170 i-v~~~s~~~-~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l----~~~Divv~S~sK~l~gp~G--- 236 (1342)
| +++++++| + .. ++++|+++|++||++||+||+|+.+.+.+....... ...+++++|+||++ | .|
T Consensus 191 v~~~~~~~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~ 268 (425)
T 1vp4_A 191 IYVVSNFHNPAGVTTSLEKRKALVEIAEKYDLFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVL-A-PGLRI 268 (425)
T ss_dssp EEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTT-C-GGGCE
T ss_pred EEECCCCCCCCCCcCCHHHHHHHHHHHHHcCCEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEecccccc-c-cccce
Confidence 6 45565555 2 22 478999999999999999999986554222111111 12468899999999 5 55
Q ss_pred eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC-----CcEEeeCC
Q psy13354 237 GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR-----GIRIVSGG 310 (1342)
Q Consensus 237 G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~-----g~~~~~~~ 310 (1342)
||+++++++++.+......+.++ ++...+.++..++... ..++++..++++.++++++.+.|.+. |+.+.. +
T Consensus 269 G~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~-~ 346 (425)
T 1vp4_A 269 GMVAGSKEFIRKIVQAKQSADLC-SPAITHRLAARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVK-S 346 (425)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECC-C
T ss_pred EEEeeCHHHHHHHHHHhhhhcCC-CCHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEec-C
Confidence 99999998888876543333333 3345555555454432 12356677888899999999999875 677643 4
Q ss_pred CCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 311 TKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 311 ~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
..++++|+.++......+++..++++ ||.+.++..+.... ...+++|++++..
T Consensus 347 ~~g~~~~~~~~~~~~~~~l~~~l~~~-gi~v~~g~~f~~~~--~~~~~iRis~~~~ 399 (425)
T 1vp4_A 347 EGGLFIWLTLPEGFDTWEMFEYAKRK-KVFYVPGRVFKVYD--EPSPSMRLSFCLP 399 (425)
T ss_dssp SBSSEEEEECCTTCCTTTTHHHHHHH-TEECEEGGGGCTTC--CCCSEEEEECSSS
T ss_pred CccEEEEEEcCCCCCHHHHHHHHHHC-CCEEECchhhcCCC--CCCCeEEEEeCCC
Confidence 56789999987533445677777777 99999875443211 0135799998764
No 100
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*
Probab=99.84 E-value=2.2e-19 Score=217.82 Aligned_cols=324 Identities=15% Similarity=0.106 Sum_probs=207.9
Q ss_pred CceeeeecCCCCcHH-HHHHHhHHHHhccc----cCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CC-CceEecCC
Q psy13354 28 NNIELIASENYTSLA-VMEAQGTLLTNKYA----EGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AE-AANVQPHS 97 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~-v~eal~~~l~~~~~----~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~-~~vi~~~s 97 (1342)
..+.+.+++|.++++ +.+++.+....... ........|....+..++++++++++.+.+| .+ +.+++++|
T Consensus 37 ~~i~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~Y~~~~g~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G 116 (428)
T 1iay_A 37 GVIQMGLAENQLCLDLIEDWIKRNPKGSICSEGIKSFKAIANFQDYHGLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGG 116 (428)
T ss_dssp SBEECSSCCCCSSHHHHHHHHHHCTTSSTTC----CHHHHHHCCCTTCCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEH
T ss_pred ceeeeccccchhhHHHHHHHHHhccccccccccccccHhhcCCCCCCCcHHHHHHHHHHHHHhcCCCCCCChhhEEEccC
Confidence 457788888887766 56665532100000 0000001122223356888877777776655 32 45556647
Q ss_pred HHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHh-----cCCeEE
Q psy13354 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKK-----NKPKLI 170 (1342)
Q Consensus 98 Gs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~-----~~~~li 170 (1342)
|++++..++.++++|||+|+++.+.|+++... .....|. ++++++.+ +++.+|++++++.+++ .+++++
T Consensus 117 ~~~ai~~~~~~~~~~gd~Vl~~~p~y~~~~~~--~~~~~g~--~~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v 192 (428)
T 1iay_A 117 ATGANETIIFCLADPGDAFLVPSPYYPAFNRD--LRWRTGV--QLIPIHCESSNNFKITSKAVKEAYENAQKSNIKVKGL 192 (428)
T ss_dssp HHHHHHHHHHHHCCTTCEEEEESSCCTTHHHH--TTTTTCC--EEEEECCCTTTTTCCCHHHHHHHHHHHHHTTCCEEEE
T ss_pred hHHHHHHHHHHhCCCCCeEEEccCCCcchHHH--HHHhcCC--EEEEeecCCccCCcCCHHHHHHHHHHHHhcCCceEEE
Confidence 78899999999999999999887666543211 2234566 45555554 4567899999998875 245666
Q ss_pred EEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CC-------Cc--EEEecCCccCCC
Q psy13354 171 IAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PF-------AD--FITSTTHKSLRG 233 (1342)
Q Consensus 171 v~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~-------~D--ivv~S~sK~l~g 233 (1342)
+++++++| ...+ +++|+++|++||++||+||+|+.+.+....+.+.. .. .| +++.|+||++ |
T Consensus 193 ~l~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~-g 271 (428)
T 1iay_A 193 ILTNPSNPLGTTLDKDTLKSVLSFTNQHNIHLVCDEIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDM-G 271 (428)
T ss_dssp EEESSCTTTCCCCCHHHHHHHHHHHHTTTCEEEEECTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTS-S
T ss_pred EEcCCCCCCCCcCCHHHHHHHHHHHHHCCeEEEEeccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhc-C
Confidence 66666665 3335 99999999999999999999986544322221111 11 46 8899999999 6
Q ss_pred CCe---eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHh--ccchHHHHHHHHHHHHHHHHHHHHhCCcEEe
Q psy13354 234 PRG---GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV--LKPDFKIYQKQVVKNAKILSKILDQRGIRIV 307 (1342)
Q Consensus 234 p~G---G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~--l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~ 307 (1342)
+.| ||+++ ++++++.+......+ +.+.+.+.++..++... ...++++.++++.++++++.+.|.+.|+++.
T Consensus 272 ~~Glr~G~~~~~~~~~~~~~~~~~~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~ 348 (428)
T 1iay_A 272 LPGFRVGIIYSFNDDVVNCARKMSSFG---LVSTQTQYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVVGIKCL 348 (428)
T ss_dssp CGGGCEEEEEESCHHHHHHHHHHHTTS---CCCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBC
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHhcc---cCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence 555 99998 567877776543322 23344555444443221 1225667888899999999999998887754
Q ss_pred eCCCCCeEEEEEccCCC------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 308 SGGTKSHIILVDLRNKK------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 308 ~~~~~~~~v~i~~~~~~------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
. +..++++|++++... ...++...+++++||.+.++..+.... .+++|++++
T Consensus 349 ~-~~~g~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~gi~v~~~~~~~~~~----~~~iRis~~ 406 (428)
T 1iay_A 349 K-NNAGLFCWMDLRPLLRESTFDSEMSLWRVIINDVKLNVSPGSSFECQE----PGWFRVCFA 406 (428)
T ss_dssp C-CSSSSEEEEECGGGCSSSSHHHHHHHHHHHHHTSCEECEEGGGGTCSS----SSEEEEECS
T ss_pred C-CCeeEEEEEechhhcCCCchhHHHHHHHHHHHhCCEEEeCchhhCCCC----CCEEEEEEe
Confidence 3 346789999987532 123566666666699999875443321 357999997
No 101
>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0
Probab=99.84 E-value=1.1e-19 Score=216.29 Aligned_cols=308 Identities=12% Similarity=0.031 Sum_probs=210.4
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC--C-CceEecCCHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA--E-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~--~-~~vi~~~sGs~A~ 102 (1342)
+.|.+..+.+.+ ++.+.+++.+.+.. ..+ |+...+..++++++++++.+.+|. + +.+++++||++|+
T Consensus 24 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~--~~~------y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al 95 (376)
T 3ezs_A 24 RGLDLGIGEPQFETPKFIQDALKNHTHS--LNI------YPKSAFEESLRAAQRGFFKRRFKIELKENELISTLGSREVL 95 (376)
T ss_dssp CCCBCSSCCCCSCCCHHHHHHHHTTGGG--GGS------CCCTTCCHHHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHH
T ss_pred CEEEeCCCCCCCCCCHHHHHHHHHhhhh--cCC------CCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHH
Confidence 567787777554 45588887766521 112 223334468888888888888886 3 5666676999999
Q ss_pred HHHHHHccCC--CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 103 QAVFFSVLNP--GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 103 ~~al~al~~p--GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
..++.+++++ ||+|++..+.|+ .....+...|. +++.++.++++.+++ ++++.+.+ ++++++++++++| +
T Consensus 96 ~~~~~~~~~~~~gd~vl~~~p~~~---~~~~~~~~~g~--~~~~~~~~~~~~~~~-~l~~~~~~-~~~~v~~~~p~nptG 168 (376)
T 3ezs_A 96 FNFPSFVLFDYQNPTIAYPNPFYQ---IYEGAAKFIKA--KSLLMPLTKENDFTP-SLNEKELQ-EVDLVILNSPNNPTG 168 (376)
T ss_dssp HHHHHHHTTTCSSCEEEEEESCCT---HHHHHHHHTTC--EEEEEECCGGGTSCC-CCCHHHHH-HCSEEEECSSCTTTC
T ss_pred HHHHHHHcCCCCCCEEEEecCCcH---hHHHHHHHcCC--EEEEcccCCCCCcch-hHHhhhcc-CCCEEEEcCCCCCcC
Confidence 9999999999 999998775554 44445566677 445555554433444 66666665 3556666566665 2
Q ss_pred -cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC----------CCCCcEEEecCCccCCCCCe---eEEEEe
Q psy13354 180 -YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP----------VPFADFITSTTHKSLRGPRG---GFILMK 242 (1342)
Q Consensus 180 -~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~----------l~~~Divv~S~sK~l~gp~G---G~iv~~ 242 (1342)
.. ++++|+++|++||++||+||+|+.+.+.. ...+. ....+++++|+||++ |+.| ||++++
T Consensus 169 ~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~ 246 (376)
T 3ezs_A 169 RTLSLEELISWVKLALKHDFILINDECYSEIYENT-PPPSLLEACMLAGNEAFKNVLVIHSLSKRS-SAPGLRSGFIAGD 246 (376)
T ss_dssp CCCCHHHHHHHHHHHHHHTCEEEEECTTTTCBSSS-CCCCHHHHHHHTTCTTCTTEEEEEESTTTT-TCGGGCCEEEEEC
T ss_pred CCCCHHHHHHHHHHHHHcCcEEEEEccchhhccCC-CCCCHHHccccccccccCcEEEEecchhcc-CCccceeEEEeeC
Confidence 22 48888999999999999999998654432 22221 123468899999999 6556 999999
Q ss_pred chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC
Q psy13354 243 KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 243 ~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~ 322 (1342)
+++++.+........+ +++.+.+.++..++. . .+++++.++++.++++++.+.|. ++. .+..++++|+.++
T Consensus 247 ~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~-~-~~~~~~~~~~~~~~~~~l~~~l~--~~~---~~~~~~~~~~~~~- 317 (376)
T 3ezs_A 247 SRLLEKYKAFRAYLGY-TSANAIQKASEAAWL-D-DRHAEFFRNIYANNLKLARKIFK--NTL---IYPYSFYVYLPVQ- 317 (376)
T ss_dssp HHHHHHHHHHHTTTCC-CCCHHHHHHHHHHHH-C-SHHHHHHHHHHHHHHHHHHHHST--TCC---CCSBSSEEEEECS-
T ss_pred HHHHHHHHHHHhhhcC-CCChHHHHHHHHHHh-C-cHHHHHHHHHHHHHHHHHHHHhc--CCC---CCCcceEEEEECC-
Confidence 9998888765443333 334555555554443 3 34677888999999999999987 654 3466789999987
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
...++...+++++||.+.++..++... ...+++|++++.
T Consensus 318 --~~~~~~~~l~~~~gi~v~~g~~~~~~~--~~~~~iRis~~~ 356 (376)
T 3ezs_A 318 --NGENFAKTLYQNEGIITLPALYLGRNR--IGADYVRLALVY 356 (376)
T ss_dssp --CHHHHHHHHHHHHCCBCEEGGGGCSTT--TTTTEEEEECCS
T ss_pred --CHHHHHHHHHHhCCEEEeCcHHhCCCC--CCCCeEEEEEcC
Confidence 345677777775799999876655311 124679999874
No 102
>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1
Probab=99.84 E-value=5.5e-20 Score=221.80 Aligned_cols=316 Identities=13% Similarity=0.105 Sum_probs=211.2
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
++.+.+..+.+. .++.+.+++ +.+.. .. ..|+...+..++++++++++...+|.+ +.+++++||++|
T Consensus 43 ~~~i~l~~~~~~~~~~~~v~~a~-~~l~~-~~------~~y~~~~g~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a 114 (409)
T 2gb3_A 43 VRIHHLNIGQPDLKTPEVFFERI-YENKP-EV------VYYSHSAGIWELREAFASYYKRRQRVDVKPENVLVTNGGSEA 114 (409)
T ss_dssp CEEEECSSCCCCSCCCTHHHHHH-HHTCC-SS------CCCCCTTCCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHH
T ss_pred CCEEeccCCCCCCCCCHHHHHHH-HHHhc-CC------CCCCCCCCcHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHH
Confidence 455777776654 345688888 76632 11 123333445688887777777766532 455666589999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++++||+|++....|+++ ...+...|. +++.++.++ ++.+ ++++++.+++ ++++++++++++|
T Consensus 115 ~~~~~~~~~~~gd~Vl~~~~~~~~~---~~~~~~~g~--~~~~v~~~~~~~~~~-~~~l~~~l~~-~~~~v~~~~p~npt 187 (409)
T 2gb3_A 115 ILFSFAVIANPGDEILVLEPFYANY---NAFAKIAGV--KLIPVTRRMEEGFAI-PQNLESFINE-RTKGIVLSNPCNPT 187 (409)
T ss_dssp HHHHHHHHCCTTCEEEEEESCCTHH---HHHHHHHTC--EEEEEECCGGGTSCC-CTTGGGGCCT-TEEEEEEESSCTTT
T ss_pred HHHHHHHhCCCCCEEEEcCCCchhH---HHHHHHcCC--EEEEeccCCCCCCcc-HHHHHHhhCc-CCeEEEECCCCCCC
Confidence 9999999999999999888665543 344555676 444455553 4444 7888887765 4566666565555
Q ss_pred cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe---eEEEEec-hhHH
Q psy13354 179 QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG---GFILMKK-KYKK 247 (1342)
Q Consensus 179 ~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G---G~iv~~~-~l~~ 247 (1342)
+. .++++|+++|++||++||+|++|+.+.+.. .+.+.+ ...|++++|+||++ |+.| ||+++++ ++++
T Consensus 188 G~~~~~~~l~~i~~~~~~~~~~li~Dea~~~~~~~~-~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~l~~ 265 (409)
T 2gb3_A 188 GVVYGKDEMRYLVEIAERHGLFLIVDEVYSEIVFRG-EFASALSIESDKVVVIDSVSKKF-SACGARVGCLITRNEELIS 265 (409)
T ss_dssp CCCCCHHHHHHHHHHHHHTTCEEEEECTTTTCBCSS-CCCCGGGSCCTTEEEEEESTTTT-TCGGGCCEEEECSCHHHHH
T ss_pred CCCcCHHHHHHHHHHHHHcCCEEEEECcccccccCC-CCCCccccCCCCEEEEecchhcc-CCccceEEEEEECcHHHHH
Confidence 22 368999999999999999999998765432 222222 23589999999999 6555 9999999 8888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCH
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
.+......+. +++.+.+.++..++ +....++++..+++.++++++.+.|.+.|+.+...+..++++|+.++ .....
T Consensus 266 ~l~~~~~~~~--~~~~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~-~~~~~ 341 (409)
T 2gb3_A 266 HAMKLAQGRL--APPLLEQIGSVGLL-NLDDSFFDFVRETYRERVETVLKKLEEHGLKRFTKPSGAFYITAELP-VEDAE 341 (409)
T ss_dssp HHHHHHHHSC--CCCHHHHHHHHHHH-TCCHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCCCSBSSEEEEECS-SSCHH
T ss_pred HHHHHHhccC--CCCHHHHHHHHHHH-hccHHHHHHHHHHHHHHHHHHHHHHHHcCceeeeCCCeeEEEEEEeC-CCCHH
Confidence 8766433333 34445555544444 22234677788899999999999999888776223456778888886 22344
Q ss_pred HHHHHHHHH-----CCceeeeccCCCCCCCcccccccccccc
Q psy13354 328 KIAESILES-----ANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 328 ~~~~~ll~~-----~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++...++++ +||.+.++..+.... ....+++|++++
T Consensus 342 ~l~~~l~~~~~~~~~gi~v~~g~~f~~~~-~~~~~~iRis~~ 382 (409)
T 2gb3_A 342 EFARWMLTDFNMDGETTMVAPLRGFYLTP-GLGKKEIRIACV 382 (409)
T ss_dssp HHHHHHHHSCCBTTEEEECEEGGGGCSST-TTTSSEEEEECC
T ss_pred HHHHHHHhccccccCcEEEeCchHhCCCC-CCCCCEEEEEeC
Confidence 566666665 599999865443210 011457999987
No 103
>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*
Probab=99.84 E-value=2e-19 Score=218.06 Aligned_cols=288 Identities=12% Similarity=0.055 Sum_probs=199.1
Q ss_pred cchHHHHHHHHHHHHHHHhCCC----------CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCC
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAE----------AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSG 137 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~----------~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g 137 (1342)
..+..++++++++++++.+|.+ +.+++++|+++|+..++.++++|||+|++..+.| ......+...|
T Consensus 77 ~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l~~~gd~Vlv~~p~y---~~~~~~~~~~g 153 (425)
T 2r2n_A 77 SAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMIINPGDNVLLDEPAY---SGTLQSLHPLG 153 (425)
T ss_dssp TTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHHCCTTCEEEEESSCC---HHHHHHHGGGT
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHhCCCCCEEEEeCCCc---HHHHHHHHHcC
Confidence 3444588888888998888865 2567776889999999999999999999776544 44445556667
Q ss_pred ceeEEEEecCCCCCCCCHHHHHHHHHh-----------cCCeEEEE-cCCCCC--ccc---CHHHHHHHHHHcCCEEEEE
Q psy13354 138 KWFNSICYGLNKKEKIDYKKVEYLAKK-----------NKPKLIIA-GASAYS--QYI---DFERFYHIAKNINSYFMVD 200 (1342)
Q Consensus 138 ~~~~~v~~~~~~~~~id~e~Le~~i~~-----------~~~~liv~-~~s~~~--~~~---~l~~I~~la~~~gi~LIvD 200 (1342)
. +++.++.++++ +|++++++.++. .+++++++ +.++|| ... .+++|+++|++||++||+|
T Consensus 154 ~--~~~~v~~~~~~-~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~li~D 230 (425)
T 2r2n_A 154 C--NIINVASDESG-IVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSLTSERKKEIYELARKYDFLIIED 230 (425)
T ss_dssp C--EEEEECEETTE-ECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEE
T ss_pred C--EEEEeCcCCCC-CCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcCCHHHHHHHHHHHHHcCCEEEEE
Confidence 6 44445554444 899999999873 24567655 344555 223 4669999999999999999
Q ss_pred cccchhhhhcCCCCCCC--C--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHH
Q psy13354 201 MAHYAGLIAAGEYPNPV--P--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAF 273 (1342)
Q Consensus 201 ea~~~g~~~~~~~~~~l--~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al 273 (1342)
|+|+...+.+....+.. + ..+++++|+||++ + .| ||+++++++++.+........+ +++.+.+.++..++
T Consensus 231 e~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~-~-~GlRiG~~~~~~~l~~~l~~~~~~~~~-~~~~~~q~a~~~~l 307 (425)
T 2r2n_A 231 DPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKII-S-SGLRIGFLTGPKPLIERVILHIQVSTL-HPSTFNQLMISQLL 307 (425)
T ss_dssp CTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTT-C-STTCCEEEEEEHHHHHHHHHHHHTTTC-SSCHHHHHHHHHHH
T ss_pred CCcccccCCCCCCCCccccCCCCCEEEEccchhhc-c-CccceEEEecCHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 99986544332222221 1 1358899999999 5 56 9999999988888764333333 34455666655555
Q ss_pred HHh----ccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCC
Q psy13354 274 KEV----LKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIP 347 (1342)
Q Consensus 274 ~~~----l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p 347 (1342)
... ...++++.++++.++++++.+.|.+. |+.....+.+++++|+.++....+.+++...+.++||.+.++..+
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~p~~g~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~f 387 (425)
T 2r2n_A 308 HEWGEEGFMAHVDRVIDFYSNQKDAILAAADKWLTGLAEWHVPAAGMFLWIKVKGINDVKELIEEKAVKMGVLMLPGNAF 387 (425)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSEEECCCSBSSEEEEEETTCSCCHHHHHTHHHHTTEECEEGGGG
T ss_pred HhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEeCCCceEEEEEEeCCCCCHHHHHHHHHHHCCcEEechhhh
Confidence 432 12356777888999999999999884 663323456788999999865555565555666779999987655
Q ss_pred CCCCCccccccccccccc
Q psy13354 348 NDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 348 ~~~~~~~~~~~lRi~~~~ 365 (1342)
+.... ...+++|++++.
T Consensus 388 ~~~~~-~~~~~iRis~~~ 404 (425)
T 2r2n_A 388 YVDSS-APSPYLRASFSS 404 (425)
T ss_dssp SSSTT-SCCCEEEEECSS
T ss_pred cCCCC-CCCCEEEEEeCC
Confidence 43310 013579999874
No 104
>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.84 E-value=5.1e-19 Score=210.84 Aligned_cols=309 Identities=15% Similarity=0.111 Sum_probs=206.2
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-----CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-----AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-----~~vi~~~sGs~A~ 102 (1342)
+.+.+.+++..+++.+++++.+.... ++ .+........++++++++++.. +.+++++||++|+
T Consensus 5 ~~~~~~p~p~~~~~~v~~a~~~~~~~----------~~--~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al 72 (385)
T 2bkw_A 5 VDTLLIPGPIILSGAVQKALDVPSLG----------HT--SPEFVSIFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGW 72 (385)
T ss_dssp CCEECSSSSCCCCHHHHHTTSCCCCC----------TT--SHHHHHHHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHH
T ss_pred cceeecCCCcCchHHHHHHHhccccc----------cC--CHHHHHHHHHHHHHHHHHhCCCCCCCCceEEEcCchHHHH
Confidence 34667888888888888886544321 11 1111223344566777777753 4566666999999
Q ss_pred HHHHHHcc---CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC-CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 103 QAVFFSVL---NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 103 ~~al~al~---~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
..++.++. ++||+|+++...+.+. +....+...|. +++.++. ++++.+|++++++++++.++++|++++++++
T Consensus 73 ~~~~~~~~~~~~~gd~vlv~~~~~~~~-~~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~v~~~~~~np 149 (385)
T 2bkw_A 73 DIFASNFILSKAPNKNVLVVSTGTFSD-RFADCLRSYGA--QVDVVRPLKIGESVPLELITEKLSQNSYGAVTVTHVDTS 149 (385)
T ss_dssp HHHHHHHSCTTCSCCEEEEECSSHHHH-HHHHHHHHTTC--EEEEECCSSTTSCCCHHHHHHHHHHSCCSEEEEESEETT
T ss_pred HHHHHHHhccCCCCCeEEEEcCCcchH-HHHHHHHHcCC--ceEEEecCCCCCCCCHHHHHHHHhcCCCCEEEEEccCCC
Confidence 99999997 8999998764322111 11234456676 4555566 6778899999999998745666666665555
Q ss_pred --cccCHHHHHHHHHHc--CCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHH-HHhh
Q psy13354 179 --QYIDFERFYHIAKNI--NSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKK-IINS 251 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~--gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~-~l~~ 251 (1342)
...++++|+++|++| |++||+|++|+.|... ..... .+|++++|+||+++|+.| |++++++++++ .+..
T Consensus 150 tG~~~~l~~i~~~~~~~~~~~~li~D~a~~~~~~~----~~~~~~~~d~~~~s~~K~~~~~~G~G~~~~~~~~~~~~l~~ 225 (385)
T 2bkw_A 150 TAVLSDLKAISQAIKQTSPETFFVVDAVCSIGCEE----FEFDEWGVDFALTASQKAIGAPAGLSISLCSSRFMDYALND 225 (385)
T ss_dssp TTEECCHHHHHHHHHHHCTTSEEEEECTTTTTTSC----CCTTTTTCSEEEEESSSTTCCCSCEEEEEECHHHHHHHTCH
T ss_pred cCeEcCHHHHHHHHHhhCCCCEEEEECccccCCcc----ccccccCceEEEecCccccccCCcceEEEEcHHHHHHHHhh
Confidence 445899999999999 9999999999865431 11111 368999999999977888 99999987766 4421
Q ss_pred ----------------------ccC--CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH-HhCCcEE
Q psy13354 252 ----------------------AVF--PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL-DQRGIRI 306 (1342)
Q Consensus 252 ----------------------~~~--~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L-~~~g~~~ 306 (1342)
... ....++++...+.++..++......++++..+++.++++++.+.| ++.|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~ 305 (385)
T 2bkw_A 226 SKNGHVHGYFSSLRRWTPIMENYEAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLTS 305 (385)
T ss_dssp HHHCCCSCSTTCHHHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCEE
T ss_pred ccCCCCCceeecHHHHhhHHHhhhccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhcCcee
Confidence 000 111234445555555555544333346778899999999999999 8888887
Q ss_pred eeCC----CCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccc-cc
Q psy13354 307 VSGG----TKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG-SS 364 (1342)
Q Consensus 307 ~~~~----~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~-~~ 364 (1342)
..+. ...+++|+.+++ ..++...+. ++||.+.++..+.. ..+.+|++ ++
T Consensus 306 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~-~~gi~v~~g~~~~~-----~~~~iRis~~~ 359 (385)
T 2bkw_A 306 VSRYPSNMSAHGLTAVYVAD---PPDVIAFLK-SHGVVIAGGIHKDI-----GPKYIRIGHMG 359 (385)
T ss_dssp SSCSSSTTBCSSCEEEECSC---HHHHHHHHH-HTTEECBCCCCTTT-----GGGEEEECCCG
T ss_pred cccCcccccCCceEEEecCC---HHHHHHHHH-HCCeEEeCCCCccc-----CCCEEEEEccc
Confidence 5421 246788888764 345555554 56999987543221 24679999 55
No 105
>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*
Probab=99.83 E-value=1e-19 Score=218.36 Aligned_cols=316 Identities=12% Similarity=0.061 Sum_probs=206.0
Q ss_pred cCceeeeecC-CC---CcHHHHHHHhHHHHhcc--ccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHH
Q psy13354 27 NNNIELIASE-NY---TSLAVMEAQGTLLTNKY--AEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGS 99 (1342)
Q Consensus 27 ~~~i~l~a~~-n~---l~~~v~eal~~~l~~~~--~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs 99 (1342)
.+.+.+..+. ++ .++.+.+++.+.+.... ..+|+ ...+..++++ .+++++|.+ +.+++++||+
T Consensus 32 ~~~i~l~~g~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~------~~~~~~~l~~----~la~~~g~~~~~v~~~~g~~ 101 (397)
T 2zyj_A 32 PGILSFAGGLPAPELFPKEEAAEAAARILREKGEVALQYS------PTEGYAPLRA----FVAEWIGVRPEEVLITTGSQ 101 (397)
T ss_dssp TTCEEESSCCCCGGGCCHHHHHHHHHHHHHHHHHHHTSCC------CTTCCHHHHH----HHHHHHTSCGGGEEEESHHH
T ss_pred CCceecCCCCCCchhCCHHHHHHHHHHHHHhcchhhhCCC------CCCCCHHHHH----HHHHHhCCChhhEEEeccHH
Confidence 4557776553 22 23458888887764311 11222 2233446666 677777765 5666675888
Q ss_pred HHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEE-EEcCCCCC
Q psy13354 100 QANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI-IAGASAYS 178 (1342)
Q Consensus 100 ~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~li-v~~~s~~~ 178 (1342)
+|+..++.+++++||+|++..+.++ .....+...|..+..+ +.++++ +|++++++.+++.+++++ +++++++|
T Consensus 102 ~al~~~~~~~~~~gd~Vl~~~p~y~---~~~~~~~~~g~~~~~~--~~~~~~-~d~~~l~~~l~~~~~~~v~~~~~~~np 175 (397)
T 2zyj_A 102 QALDLVGKVFLDEGSPVLLEAPSYM---GAIQAFRLQGPRFLTV--PAGEEG-PDLDALEEVLKRERPRFLYLIPSFQNP 175 (397)
T ss_dssp HHHHHHHHHHCCTTCEEEEEESCCH---HHHHHHHTTCCEEEEE--EEETTE-ECHHHHHHHHHHCCCSCEEECCBSCTT
T ss_pred HHHHHHHHHhCCCCCEEEEeCCCcH---HHHHHHHHcCCEEEec--CcCCCC-CCHHHHHHHHhhcCCeEEEECCCCcCC
Confidence 8999999999999999998775544 3444455667644444 444444 899999999987455665 45555555
Q ss_pred --ccc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-------CCcEEEecCCccCCCCCe---eEEEEec
Q psy13354 179 --QYI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-------FADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 179 --~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-------~~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
... ++++|+++|++||++||+||+|+.+.+.+....+... ...++++|+||++ | .| ||+++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~-~G~r~G~~~~~~ 253 (397)
T 2zyj_A 176 TGGLTPLPARKRLLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVL-S-PGLRVAFAVAHP 253 (397)
T ss_dssp TCCBCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTT-C-GGGCCEEEECCH
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccc-c-ccceeEEEecCH
Confidence 222 4669999999999999999999875542221111111 1138899999999 5 45 9999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhC---CcEEeeCCCCCeEEEEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQR---GIRIVSGGTKSHIILVD 319 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~---g~~~~~~~~~~~~v~i~ 319 (1342)
++++.+......+.+++ +...+.++..++. ... +++++..+++.++++++.+.|.+. |+.+.. +..++++|+.
T Consensus 254 ~~~~~l~~~~~~~~~~~-~~~~~~a~~~~l~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~g~~~~~-~~~g~~~~~~ 330 (397)
T 2zyj_A 254 EALQKLVQAKQGADLHT-PMLNQMLVHELLK-EGFSERLERVRRVYREKAQAMLHALDREVPKEVRYTR-PKGGMFVWME 330 (397)
T ss_dssp HHHHHHHHHHHHHHSSC-CHHHHHHHHHHHT-TTHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSEECC-CSBSSEEEEE
T ss_pred HHHHHHHHHHHhhcCCC-CHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCeEEcc-CCccEEEEEE
Confidence 88888765433333333 3444444443333 221 356777888899999999999875 687643 4567899999
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
++......++...++++ ||.+.++..+.... ...+++|++++..
T Consensus 331 ~~~~~~~~~~~~~l~~~-gi~v~~g~~f~~~~--~~~~~iRis~~~~ 374 (397)
T 2zyj_A 331 LPKGLSAEGLFRRALEE-NVAFVPGGPFFANG--GGENTLRLSYATL 374 (397)
T ss_dssp CSTTCCHHHHHHHHHHT-TEEEEESGGGCTTS--CCTTEEEEECSSS
T ss_pred cCCCCCHHHHHHHHHHC-CCEEechHHhcCCC--CCCCeEEEEcCCC
Confidence 87543345666666665 99999865443211 0135799998874
No 106
>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}
Probab=99.83 E-value=1.6e-19 Score=216.65 Aligned_cols=313 Identities=10% Similarity=0.039 Sum_probs=205.1
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.|.+..+... .++.+.+++.+.+..... .....|+...+..++++++++++.+.+|.. +.+++++||++|
T Consensus 35 ~~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~---~~~~~y~~~~g~~~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~a 111 (398)
T 3ele_A 35 ENVYDFSIGNPSIPAPQIVNDTIKELVTDYDS---VALHGYTSAQGDVETRAAIAEFLNNTHGTHFNADNLYMTMGAAAS 111 (398)
T ss_dssp GGCEECCSCCCCSCCCHHHHHHHHHHHHHSCH---HHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHH
T ss_pred CCeEEeecCCCCCCCCHHHHHHHHHHHhcCCc---cccCCcCCCCCcHHHHHHHHHHHHHHhCCCCChHHEEEccCHHHH
Confidence 356777776543 345688998888753110 000112233444688888888888888742 566667699999
Q ss_pred HHHHHHHccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 102 NQAVFFSVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 102 ~~~al~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+..++.+++.+| |+|++..+.++ .....+...|. +++.++.+ +++.+|++++++.+++ +++++++++++||
T Consensus 112 l~~~~~~l~~~g~d~vl~~~p~~~---~~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~p~npt 185 (398)
T 3ele_A 112 LSICFRALTSDAYDEFITIAPYFP---EYKVFVNAAGA--RLVEVPADTEHFQIDFDALEERINA-HTRGVIINSPNNPS 185 (398)
T ss_dssp HHHHHHHHCCSTTCEEEEESSCCT---HHHHHHHHTTC--EEEEECCCTTTSSCCHHHHHHTCCT-TEEEEEECSSCTTT
T ss_pred HHHHHHHHcCCCCCEEEEeCCCch---hhHHHHHHcCC--EEEEEecCCcCCcCCHHHHHHHhCc-CCCEEEEcCCCCCC
Confidence 999999999999 99997775544 44455566677 45555655 3578999999998875 4667777666666
Q ss_pred -ccc---CHHHHHHHHHH------cCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEec
Q psy13354 179 -QYI---DFERFYHIAKN------INSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 179 -~~~---~l~~I~~la~~------~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
... ++++|+++|++ ||++||+||+|+.+.+.+...+.... ..+++++|+||++ |+.| ||+++++
T Consensus 186 G~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~ 264 (398)
T 3ele_A 186 GTVYSEETIKKLSDLLEKKSKEIGRPIFIIADEPYREIVYDGIKVPFVTKYYDNTLVCYSYSKSL-SLPGERIGYVLVPD 264 (398)
T ss_dssp CCCCCHHHHHHHHHHHHHHHHHHTSCCEEEEECTTTTCBCTTCCCCCGGGTCSSEEEEEESTTTS-SCTTTCCEEEECCT
T ss_pred CCCCCHHHHHHHHHHHHhhhhccCCCeEEEEeccccccccCCCCcCChHhhcCCeEEEEehhhcC-CCccceeEEEEEcc
Confidence 222 48888899999 99999999999865543222222111 2468899999999 5455 9999998
Q ss_pred hhH------HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEE
Q psy13354 244 KYK------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317 (1342)
Q Consensus 244 ~l~------~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~ 317 (1342)
+++ +.+..........+++...+.++...+ +... .++++.++++++.+.|.+.|+++.. +.+++++|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l-~~~~-----~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~ 337 (398)
T 3ele_A 265 EVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVKCQ-GATG-----DINAYKENRDLLYEGLTRIGYHCFK-PDGAFYMF 337 (398)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTTCT-TCCC-----CHHHHHHHHHHHHHHHHHHTCCEEC-CSBSSEEE
T ss_pred hhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHHHh-cCHH-----HHHHHHHHHHHHHHHHHHcCCeecC-CCeeEEEE
Confidence 743 222221111111223233333333222 2111 3577888899999999988887654 45677799
Q ss_pred EEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 318 i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+.++.. ...++.. .+.++||.+.++..++. .+++|++++
T Consensus 338 ~~~~~~-~~~~~~~-~l~~~gi~v~~g~~~~~------~~~iRis~~ 376 (398)
T 3ele_A 338 VKALED-DSNAFCE-KAKEEDVLIVAADGFGC------PGWVRISYC 376 (398)
T ss_dssp EECSSS-CHHHHHH-HHHTTTEECEESGGGTC------TTEEEEECC
T ss_pred EEcCCC-CHHHHHH-HHHHCCEEEeCccccCC------CCeEEEEec
Confidence 988753 2344554 55677999998765543 246999986
No 107
>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1
Probab=99.83 E-value=2.2e-19 Score=216.94 Aligned_cols=319 Identities=14% Similarity=0.106 Sum_probs=205.0
Q ss_pred CceeeeecC-----C-CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh------C--CC-Cce
Q psy13354 28 NNIELIASE-----N-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF------N--AE-AAN 92 (1342)
Q Consensus 28 ~~i~l~a~~-----n-~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~------g--~~-~~v 92 (1342)
+.+.+..+. + ..++.+.+++.+.+..... ..|+...+..++++++++++.+.+ | .+ +.+
T Consensus 34 ~~i~l~~g~p~~~~~~~~~~~v~~a~~~~~~~~~~------~~y~~~~~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v 107 (416)
T 1bw0_A 34 PIIKLSVGDPTLDKNLLTSAAQIKKLKEAIDSQEC------NGYFPTVGSPEAREAVATWWRNSFVHKEELKSTIVKDNV 107 (416)
T ss_dssp CCEECCCCCTTTTSCSCCCHHHHHHHHHHHHTTCS------SSCCCTTCCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGE
T ss_pred CeEEecCcCCCcccCCCCCHHHHHHHHHHhhCCcc------CCcCCCCCCHHHHHHHHHHHHhhhcccccCCCCCCcceE
Confidence 457776664 2 3455699998888753211 123333445678886666665321 1 22 455
Q ss_pred EecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEE
Q psy13354 93 VQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIA 172 (1342)
Q Consensus 93 i~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~ 172 (1342)
++++||++|+..++.+++++||+|++..+.|+++ ...+...|..+..++++.+.++.+|++++++.+++. ++++++
T Consensus 108 ~~~~g~~~al~~~~~~l~~~gd~vl~~~p~y~~~---~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~l~~~-~~~v~i 183 (416)
T 1bw0_A 108 VLCSGGSHGILMAITAICDAGDYALVPQPGFPHY---ETVCKAYGIGMHFYNCRPENDWEADLDEIRRLKDDK-TKLLIV 183 (416)
T ss_dssp EEESHHHHHHHHHHHHHCCTTCEEEEEESCCTHH---HHHHHHTTCEEEEEEEEGGGTTEECHHHHHHHCCTT-EEEEEE
T ss_pred EEeCChHHHHHHHHHHhCCCCCEEEEcCCCcHhH---HHHHHHcCcEEEEeecCcccCCCCCHHHHHHHhccC-CeEEEE
Confidence 6665889999999999999999999888665543 444566777555554432234678999999988754 445544
Q ss_pred cCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcC----CCCCCC--CC--CcEEEecCCccCCCCCe---
Q psy13354 173 GASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAG----EYPNPV--PF--ADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 173 ~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~----~~~~~l--~~--~Divv~S~sK~l~gp~G--- 236 (1342)
+++++| ...+ +++|+++|++||++||+|++|..+.+.+. .+.... .. .+++++|+||++ +..|
T Consensus 184 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~Glr~ 262 (416)
T 1bw0_A 184 TNPSNPCGSNFSRKHVEDIVRLAEELRLPLFSDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNL-VVPGWRL 262 (416)
T ss_dssp ESSCTTTCCCCCHHHHHHHHHHHHHHTCCEEEECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTT-SCGGGCC
T ss_pred eCCCCCCCcccCHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhC-CCCCceE
Confidence 445555 2335 99999999999999999999987543322 122211 11 247789999998 4444
Q ss_pred eEEEEech--hHHHHhhcc--CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC
Q psy13354 237 GFILMKKK--YKKIINSAV--FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT 311 (1342)
Q Consensus 237 G~iv~~~~--l~~~l~~~~--~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~ 311 (1342)
||++++++ +++.+.... ......+++...+.++..++......++++..+++.++++++.+.|.+. |+.+.. +.
T Consensus 263 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~ 341 (416)
T 1bw0_A 263 GWLLYVDPHGNGPSFLEGLKRVGMLVCGPCTVVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTM-PR 341 (416)
T ss_dssp EEEEEECTTCSCHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECC-CC
T ss_pred EEEEeeCchhhHHHHHHHHHHHhccccCCCcHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccC-CC
Confidence 99998873 444332110 0111223445555555555442223467788899999999999999986 777643 45
Q ss_pred CCeEEEEEccCC-----CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 312 KSHIILVDLRNK-----KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 312 ~~~~v~i~~~~~-----~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+++++|+.++.. ..+.++...+++++||.+.++..++. .+++|++++
T Consensus 342 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~------~~~iRis~~ 393 (416)
T 1bw0_A 342 GAMYLMSRIDLEKYRDIKTDVEFFEKLLEEENVQVLPGTIFHA------PGFTRLTTT 393 (416)
T ss_dssp BTTEEEEEECGGGBSSCCSHHHHHHHHHHHHCEECEEGGGGTC------TTEEEEECC
T ss_pred eeEEEEEeCCHHHcCCCCCHHHHHHHHHHHCCEEEecccccCC------CCeEEEEec
Confidence 578888887531 23456677777667999998765442 246999985
No 108
>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}
Probab=99.83 E-value=5.8e-19 Score=206.59 Aligned_cols=297 Identities=11% Similarity=0.062 Sum_probs=202.7
Q ss_pred hccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHH
Q psy13354 25 RQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQA 101 (1342)
Q Consensus 25 ~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A 101 (1342)
..++.|.|..++|++ +|.+.+++.+.... . .. |. ..+..++++ .+++++|.+ +.+++++|++++
T Consensus 14 ~~~~~i~l~~n~~~~~~~~~v~~a~~~~~~~-~-~~------y~-~~~~~~lr~----~la~~~~~~~~~i~~t~G~~~~ 80 (337)
T 3p1t_A 14 AAAQAVCLAFNENPEAVEPRVQAAIAAAAAR-I-NR------YP-FDAEPRVMR----KLAEHFSCPEDNLMLVRGIDEC 80 (337)
T ss_dssp CCCCCEECSSCCCCSCCCHHHHHHHHHHGGG-T-TS------CC-TTHHHHHHH----HHHHHHTSCGGGEEEESHHHHH
T ss_pred CCCCceEeeCCCCCCCCCHHHHHHHHHhhhh-h-cc------CC-CCchHHHHH----HHHHHhCcCHHHEEEeCCHHHH
Confidence 345668888888765 44588888776642 1 12 21 234445555 888888987 467777577779
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
+..++.++ +||+|++..+.+ ......+...|. +++.++.++++.+|++++++. .+++++++++++|| .
T Consensus 81 l~~~~~~~--~gd~vl~~~p~~---~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~---~~~~~v~i~~p~nptG~ 150 (337)
T 3p1t_A 81 FDRISAEF--SSMRFVTAWPGF---DGYRARIAVSGL--RHFEIGLTDDLLLDPNDLAQV---SRDDCVVLANPSNPTGQ 150 (337)
T ss_dssp HHHHHHHS--TTSEEEEESSSC---SHHHHHHTTSCC--EEEEECBCTTSSBCHHHHTTC---CTTEEEEEESSCTTTCC
T ss_pred HHHHHHhc--CCCeEEEeCCCc---HHHHHHHHHcCC--EEEEecCCCCCCCCHHHHHhh---cCCCEEEEeCCCCCCCC
Confidence 99998888 999999776444 444555566676 566667777788999999875 24567777666666 5
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCCc
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPG 256 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~ 256 (1342)
..++++|.++|+++++ +|+|++|..... ...........+++++|+||++ |+.| ||+++++++++.+......
T Consensus 151 ~~~~~~l~~l~~~~~~-~ivDea~~~~~~-~~~~~~~~~~~~i~~~S~sK~~-g~~G~r~G~~~~~~~~~~~l~~~~~~- 226 (337)
T 3p1t_A 151 ALSAGELDQLRQRAGK-LLIDETYVDYSS-FRARGLAYGENELVFRSFSKSY-GLAGLRLGALFGPSELIAAMKRKQWF- 226 (337)
T ss_dssp CCCHHHHHHHHHHCSE-EEEECTTGGGSS-CSSSCCCCBTTEEEEEESSSTT-CCTTTCCEEEECCHHHHHHHHTTSCT-
T ss_pred CCCHHHHHHHHHhCCc-EEEECCChhhcc-ccccccccCCCEEEEeeCchhc-cCcchheEEEEeCHHHHHHHHhhcCC-
Confidence 5599999999999997 566999874222 1111111223578999999999 5555 9999999999888764332
Q ss_pred cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHH
Q psy13354 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 257 ~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
.+++.+.+.++..++.. . .++.+..+++.++++++.+.|.+.|+.+.. +.+.++|+..++ . +.+..++.+
T Consensus 227 --~~~~~~~~~a~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~--~~~~~~~~~~~~---~-~~~~~~l~~ 296 (337)
T 3p1t_A 227 --CNVGTLDLHALEAALDN-D-RAREAHIAKTLAQRRRVADALRGLGYRVAS--SEANFVLVENAA---G-ERTLRFLRE 296 (337)
T ss_dssp --TCSCHHHHHHHHHHHTC-H-HHHHHHHHHHHHHHHHHHHHHHHTTCCBCC--CSSSEEEEECTT---T-HHHHHHHHH
T ss_pred --CCCCHHHHHHHHHHhCC-H-HHHHHHHHHHHHHHHHHHHHHHHCcCEECC--CCCeEEEEEcCC---H-HHHHHHHHH
Confidence 23334455554444332 2 245566778888899999999998887643 455677777653 2 344556667
Q ss_pred CCceeeeccCCCCCCCcccccccccccc
Q psy13354 337 ANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 337 ~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+||.+.++..++. .+++|++++
T Consensus 297 ~gi~v~~g~~~~~------~~~iRis~~ 318 (337)
T 3p1t_A 297 RGIQVKDAGQFGL------HHHIRISIG 318 (337)
T ss_dssp TTEECEEGGGGTC------CSEEEEECC
T ss_pred CCeEEEECccCCC------CCeEEEecC
Confidence 7999998766543 247999987
No 109
>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}
Probab=99.83 E-value=6.4e-19 Score=208.56 Aligned_cols=298 Identities=13% Similarity=0.115 Sum_probs=200.5
Q ss_pred CceeeeecCCCC--cHHHHHHHhHHHHhcc--ccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 28 NNIELIASENYT--SLAVMEAQGTLLTNKY--AEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l--~~~v~eal~~~l~~~~--~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
+.|.+..+++.+ ++.+++++.+.+.... ..+|+. ....++++ .+++++|.+ +.+++++||++|+
T Consensus 27 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~~~y~~-------~~~~~lr~----~la~~~g~~~~~i~~t~g~~~al 95 (360)
T 3hdo_A 27 SWIKLNTNENPYPPSPEVVKAILEELGPDGAALRIYPS-------ASSQKLRE----VAGELYGFDPSWIIMANGSDEVL 95 (360)
T ss_dssp TSEECSSCCCSSCCCHHHHHHHHHHHTTTCGGGGSCCC-------SSCHHHHH----HHHHHHTCCGGGEEEESSHHHHH
T ss_pred ceeeccCCCCCCCCCHHHHHHHHHHHhcccchhhcCCC-------CchHHHHH----HHHHHhCcCcceEEEcCCHHHHH
Confidence 458888887664 4559999888875320 112221 11235555 888888865 5566666999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~ 180 (1342)
..++.+++++||+|++..+.++ .....+...|. +++.++.++++.+ +++.+ ..++++++++++++| ..
T Consensus 96 ~~~~~~l~~~gd~Vl~~~p~~~---~~~~~~~~~g~--~~~~v~~~~~~~~--~~l~~---~~~~~~v~i~~p~nptG~~ 165 (360)
T 3hdo_A 96 NNLIRAFAAEGEEIGYVHPSYS---YYGTLAEVQGA--RVRTFGLTGDFRI--AGFPE---RYEGKVFFLTTPNAPLGPS 165 (360)
T ss_dssp HHHHHHHCCTTCEEEEESSSCT---HHHHHHHHHTC--EEEEECBCTTSSB--TTCCS---SBCSSEEEEESSCTTTCCC
T ss_pred HHHHHHHhCCCCEEEEcCCChH---HHHHHHHHCCC--EEEEeeCCCCCCH--HHHHh---hcCCCEEEEeCCCCCCCCC
Confidence 9999999999999997775554 44445566676 5555566666655 33332 234557776666665 55
Q ss_pred cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC--CCCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccCC
Q psy13354 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV--PFADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFP 255 (1342)
Q Consensus 181 ~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l--~~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~ 255 (1342)
.++++|.++|+++|++||+||+|+.. ......... ...+++++|+||++ |+.| ||+++++++++.+......
T Consensus 166 ~~~~~l~~l~~~~~~~li~De~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~~~~~~~~ 242 (360)
T 3hdo_A 166 FPLEYIDELARRCAGMLVLDETYAEF--AESNALELVRRHENVVVTRTLSKSY-SLAGMRIGLAIARPEVIAALDKIRDH 242 (360)
T ss_dssp CCHHHHHHHHHHBSSEEEEECTTGGG--SSCCCTHHHHHCSSEEEEEESTTTT-SCTTSCCEEEECCHHHHHHHHHHSCS
T ss_pred cCHHHHHHHHHHCCCEEEEECChHhh--CCcchhHHhccCCCEEEEecchHhh-cCCccceeeEeeCHHHHHHHHHhCCC
Confidence 59999999999999999999999753 111111000 12358899999999 5444 9999999999888775443
Q ss_pred ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHH
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
+ +++...+.++..++. . .+++++.++++.++++++.+.|.+.|+.+. +..++++|+.++.. ...++.. .+.
T Consensus 243 ~---~~~~~~~~a~~~~l~-~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~-~l~ 313 (360)
T 3hdo_A 243 Y---NLDRLAQAACVAALR-D-QAYLSECCRRIRETREWFTTELRSIGYDVI--PSQGNYLFATPPDR-DGKRVYD-GLY 313 (360)
T ss_dssp C---CSCHHHHHHHHHHHH-C-HHHHHHHHHHHHHHHHHHHHHHHHTTCEEC--CCSSSEEEEECTTC-CHHHHHH-HHH
T ss_pred C---CCCHHHHHHHHHHhc-C-HHHHHHHHHHHHHHHHHHHHHHHHCCCEEc--CCCccEEEEECCCC-CHHHHHH-HHH
Confidence 2 233445555444444 3 346788889999999999999999888774 34567888877632 2334444 455
Q ss_pred HCCceeeeccCCCCCCCcccccccccccc
Q psy13354 336 SANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 336 ~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++||.+.++..+.. .+++|++++
T Consensus 314 ~~gi~v~~~~~~~~------~~~iRis~~ 336 (360)
T 3hdo_A 314 ARKVLVRHFSDPLL------AHGMRISIG 336 (360)
T ss_dssp HTTEECBCCCSTTT------TTSEEEECC
T ss_pred HCCEEEEECCCCCC------CCEEEEEcC
Confidence 67999987544221 357999987
No 110
>3t18_A Aminotransferase class I and II; PSI-biology, MCSG, midwest center for structural genomics, P 5'-phosphate binding; HET: PLP; 2.86A {Anaerococcus prevotii} PDB: 4emy_A*
Probab=99.83 E-value=2.1e-19 Score=216.94 Aligned_cols=314 Identities=11% Similarity=0.100 Sum_probs=199.5
Q ss_pred CceeeeecC------CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCH
Q psy13354 28 NNIELIASE------NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~------n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sG 98 (1342)
+.+++..+. ++ .++.+.+++.+... ....+| ....+..++++++.+++....+.+ +.+++++||
T Consensus 38 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~-~~~~~Y------~~~~g~~~lr~~la~~~~~~~~~~~~~~i~~t~g~ 110 (413)
T 3t18_A 38 AVINAALGTLLDDKGKIIALPSVYDRLDEMDR-SHIASY------APIEGEKDYRKIVIDTLFGPYKPEGYISAIATPGG 110 (413)
T ss_dssp GCEECCSCCCBCTTSCBCCCHHHHHHHHHSCH-HHHHSC------CCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHH
T ss_pred ceEeccccCccCCCCCcCChHHHHHHHHhcCc-ccccCc------CCCCCCHHHHHHHHHHHhcccCccccCcEEEcCcc
Confidence 557777664 33 44457777554221 111122 223345578887777777666554 145555599
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC-CCCCCCCHHHHHHHHHhc---CCe-EEEEc
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-NKKEKIDYKKVEYLAKKN---KPK-LIIAG 173 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-~~~~~id~e~Le~~i~~~---~~~-liv~~ 173 (1342)
++|+..++.++++|||+|++..+.++ .+...+...|. +++.++. +++|.+|++++++.+++. +++ +++++
T Consensus 111 ~~al~~~~~~~~~~gd~Vl~~~p~~~---~~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 185 (413)
T 3t18_A 111 TGAIRSAIFSYLDEGDPLICHDYYWA---PYRKICEEFGR--NFKTFEFFTDDFAFNIDVYKEAIDEGIRDSDRIASLIN 185 (413)
T ss_dssp HHHHHHHHHHHCCSSCEEEEESSCCT---HHHHHHHHHTC--EEEEECCBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCcc---cHHHHHHHhCC--eEEEeeccCCCCCcCHHHHHHHHHHHhhcCCCEEEEEe
Confidence 99999999999999999998775544 44445566676 4555565 345789999999998762 344 67776
Q ss_pred CC-CCC--ccc---CHHHHHHHHH------HcCCEEEEEcccchhhhhcCCCCCCCC---C--Cc---EEEecCCccCCC
Q psy13354 174 AS-AYS--QYI---DFERFYHIAK------NINSYFMVDMAHYAGLIAAGEYPNPVP---F--AD---FITSTTHKSLRG 233 (1342)
Q Consensus 174 ~s-~~~--~~~---~l~~I~~la~------~~gi~LIvDea~~~g~~~~~~~~~~l~---~--~D---ivv~S~sK~l~g 233 (1342)
++ +|| ... .+++|+++|+ +||++||+||+|......+....+... . .+ ++++|+||++ |
T Consensus 186 ~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~ 264 (413)
T 3t18_A 186 SPGNNPTGYSLSDEEWDEVITFLKEKAEDKDKKITLIVDVAYLEFAGDGDQQRKFFEKFSNLPRNLFVVVAFSMSKSH-T 264 (413)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHTTSTTCEEEEEEECTTGGGSSSSSTTTGGGGGGTTCCTTEEEEEEEEHHHHT-T
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHHhhccCCcEEEEEecccccccCChhhHHHHHHHHhhcCCCeeEEEEEecCccC-C
Confidence 55 555 222 4666667777 899999999998644332211111111 1 12 7789999999 6
Q ss_pred CCe---eEEEE---echhHHHHhhccCCcc---ccCCcHHHHHHHHHHHHHh----ccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 234 PRG---GFILM---KKKYKKIINSAVFPGI---QGGPLMHVIAAKAVAFKEV----LKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 234 p~G---G~iv~---~~~l~~~l~~~~~~~~---~~~~~~~~~~Aaa~al~~~----l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
+.| ||+++ ++++++.+........ +++++...+.++..++.+. ..+..+.+++++.++++++.+.|.
T Consensus 265 ~~G~riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 344 (413)
T 3t18_A 265 AYGLRSGAAVGISSSKEIIEEFEASLAHSARCNWSNGTHAAQNILIELERAENKKIYEQELVDLRNMLKSRADVFVTAAK 344 (413)
T ss_dssp CGGGCCEEEEEEESCHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCcCcEEEEEecCCHHHHHHHHHHHHHhhhccccCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667 99998 7888887765321111 1223344444444333221 112445667888999999999999
Q ss_pred hCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 301 QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 301 ~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
+.|+++.. +.+++++|+++. .+.++.. .+.++||.+.++ .+++|++++..++..
T Consensus 345 ~~g~~~~~-~~~~~~~~~~~~---~~~~~~~-~l~~~gv~v~~g-----------~~~iRis~~~~~~~~ 398 (413)
T 3t18_A 345 ENKLTMIP-YFGGFFTFIPTD---KAFDIVK-DLEKENIFTIPS-----------AKGIRVAICGVGEEK 398 (413)
T ss_dssp HTTCCCBC-CCSSSCEEEECS---CHHHHHH-HHHHTTEECEEC-----------SSEEEECTTTSCGGG
T ss_pred HcCCCccC-CCceEEEEeCCC---CHHHHHH-HHHhCCEEEecC-----------CCceEEEEeeCCHHH
Confidence 98887654 456677888763 2345555 556779999874 246999988655533
No 111
>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}
Probab=99.83 E-value=2.1e-19 Score=221.98 Aligned_cols=311 Identities=12% Similarity=0.074 Sum_probs=205.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC-C---CCceEecCCHHHHHHHHHHHccCCCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN-A---EAANVQPHSGSQANQAVFFSVLNPGD 114 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g-~---~~~vi~~~sGs~A~~~al~al~~pGD 114 (1342)
+|..+.+++.+.+.... ......|+...+..++++++++++.+..| . .+.+++++|+++|+..++.+++.+||
T Consensus 102 ~P~~~~~~~~~~l~~~~---~~~~~~Y~~~~G~~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l~~~gd 178 (498)
T 3ihj_A 102 FPEDAKKRARRILQACG---GNSLGSYSASQGVNCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKILVSGGG 178 (498)
T ss_dssp SCHHHHHHHHHHHHHC-------------CCSCHHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHHCCCCG
T ss_pred CCHHHHHHHHHHHHhcc---CCCCCCCCCCCCHHHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHHcCCCC
Confidence 45556666666664221 11123355556667899988888888875 3 24555665999999999999999875
Q ss_pred ----EEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhc----CCeEEEEcCCCCC-----c
Q psy13354 115 ----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKN----KPKLIIAGASAYS-----Q 179 (1342)
Q Consensus 115 ----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~----~~~liv~~~s~~~-----~ 179 (1342)
+|+++.+.|+. +...+...|. .+++++++ .+|.+|++++++.+++. +++++++++++|| .
T Consensus 179 ~~~d~Vlv~~p~y~~---~~~~~~~~g~--~~v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~s 253 (498)
T 3ihj_A 179 KSRTGVMIPIPQYPL---YSAVISELDA--IQVNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQS 253 (498)
T ss_dssp GGSEEEEEEESCCTH---HHHHHHHTTC--EEEEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCCC
T ss_pred CCCCEEEEeCCCchh---HHHHHHHcCC--EEEEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcCC
Confidence 99988766554 4445566677 44444554 45789999999999874 3566666666666 2
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCCCC-----------CC-cEEEecCCccCC---CCCeeEEE---
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNPVP-----------FA-DFITSTTHKSLR---GPRGGFIL--- 240 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~l~-----------~~-Divv~S~sK~l~---gp~GG~iv--- 240 (1342)
..++++|+++|++||++||+||+|..+.+..+ .+.+... .. .++++|+||++. |..+||++
T Consensus 254 ~~~l~~i~~la~~~~~~li~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~R~G~~~~~~ 333 (498)
T 3ihj_A 254 RKCIEDVIHFAWEEKLFLLADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGYRGGYMEVIN 333 (498)
T ss_dssp HHHHHHHHHHHHHHTCEEEEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSSCCEEEEEES
T ss_pred HHHHHHHHHHHHHcCcEEEEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCcccceEEEEEec
Confidence 23688899999999999999999987666433 2222111 01 267889999994 44449998
Q ss_pred EechhHHHHhhccCCccccCCcHHHHHHHHHHHH----------HhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC
Q psy13354 241 MKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFK----------EVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG 309 (1342)
Q Consensus 241 ~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~----------~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~ 309 (1342)
.++++++.+..... ...+++.+.+.++..++. .+. .+...+++++.++++++.+.|.+. |+.+..
T Consensus 334 ~~~~l~~~l~~~~~--~~~~~~~~~q~a~~~~l~~~~~g~~~~~~~~-~~~~~~~~~l~~~~~~l~~~L~~~~g~~~~~- 409 (498)
T 3ihj_A 334 LHPEIKGQLVKLLS--VRLCPPVSGQAAMDIVVNPPVAGEESFEQFS-REKESVLGNLAKKAKLTEDLFNQVPGIHCNP- 409 (498)
T ss_dssp CCHHHHHHHHHHHH--HSCCCCHHHHHHHHHHTCCCCTTSTTHHHHH-HHHHHHHHHHHHHHHHHHHHHHTSTTEECCC-
T ss_pred CCHHHHHHHHHHHh--ccCCCCHHHHHHHHHHhcCCccCcccHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCcEecC-
Confidence 57788887765432 233444556655544432 111 134566788999999999999986 777643
Q ss_pred CCCCeEEEEEccCC----------CCC-HHH-HHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 310 GTKSHIILVDLRNK----------KIT-GKI-AESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 310 ~~~~~~v~i~~~~~----------~~~-~~~-~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
+.+++++|+++..+ +.+ .++ +..+++++||.+.++..|+.+.+ .+++|+++.
T Consensus 410 p~gg~~~~~~l~~p~~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~---~~~~Ris~~ 473 (498)
T 3ihj_A 410 LQGAMYAFPRIFIPAKAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREG---TYHFRMTIL 473 (498)
T ss_dssp CCBSSEECCEECCCHHHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTT---CCBEEEECC
T ss_pred CCeEEEEEEeccCchhhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCC---CCEEEEEeC
Confidence 56677888766421 122 233 67788888999999877765332 468999995
No 112
>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0
Probab=99.82 E-value=8.9e-19 Score=207.07 Aligned_cols=298 Identities=15% Similarity=0.128 Sum_probs=202.3
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
++.|.+..+++++ ++.+.+++.+.+.. . ..|+. ....++++ .+++++|.+ +.+++++||++|+.
T Consensus 26 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~-~-~~y~~-------~~~~~l~~----~la~~~~~~~~~i~~~~g~t~al~ 92 (361)
T 3ftb_A 26 RELLDYSSNINPLGIPKSFLNNIDEGIKN-L-GVYPD-------VNYRRLNK----SIENYLKLKDIGIVLGNGASEIIE 92 (361)
T ss_dssp --CEETTCCCCTTCSCHHHHTTHHHHHHG-G-GSCCC-------TTCHHHHH----HHHHHHTCCSCEEEEESSHHHHHH
T ss_pred CCEEEecCCCCCCCCCHHHHHHHHHHHHH-h-cCCCC-------ccHHHHHH----HHHHHhCCCcceEEEcCCHHHHHH
Confidence 4568888887665 45688888887753 2 23321 22235555 888888865 56666669999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c-cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q-YI 181 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~-~~ 181 (1342)
.++.++ |+|++....+. .....+...|. +++.++.++++.++++++++.+++ +++++++++++| + ..
T Consensus 93 ~~~~~~----d~vi~~~~~~~---~~~~~~~~~g~--~~~~~~~~~~~~~~~~~l~~~l~~--~~~v~i~~p~nptG~~~ 161 (361)
T 3ftb_A 93 LSISLF----EKILIIVPSYA---EYEINAKKHGV--SVVFSYLDENMCIDYEDIISKIDD--VDSVIIGNPNNPNGGLI 161 (361)
T ss_dssp HHHTTC----SEEEEEESCCT---HHHHHHHHTTC--EEEEEECCTTSCCCHHHHHHHTTT--CSEEEEETTBTTTTBCC
T ss_pred HHHHHc----CcEEEecCChH---HHHHHHHHcCC--eEEEeecCcccCCCHHHHHHhccC--CCEEEEeCCCCCCCCCC
Confidence 999988 99998775544 44445566677 455556665666789999999887 556666565655 2 22
Q ss_pred ---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-----CCcEEEecCCccCCCCCe---eEEE-EechhHHHH
Q psy13354 182 ---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-----FADFITSTTHKSLRGPRG---GFIL-MKKKYKKII 249 (1342)
Q Consensus 182 ---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-----~~Divv~S~sK~l~gp~G---G~iv-~~~~l~~~l 249 (1342)
++++|+++|++||+++|+|++|+.+... ....... ...++++|+||++ |+.| ||++ .++++++.+
T Consensus 162 ~~~~l~~i~~~~~~~~~~li~De~~~~~~~~--~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~g~~~~~~~~~~~~~ 238 (361)
T 3ftb_A 162 NKEKFIHVLKLAEEKKKTIIIDEAFIEFTGD--PSSSFVGEIKNYSCLFIIRAMTKFF-AMPGIRFGYGITNNKEIAAKI 238 (361)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECSSGGGTCC--TTSSSGGGTTTCSSEEEEEESSSTT-SCGGGCCEEEEESCHHHHHHH
T ss_pred CHHHHHHHHHHhhhcCCEEEEECcchhhcCC--cccchhHhcccCCCEEEEeeChhhc-CCCCcceeEEEeCCHHHHHHH
Confidence 5888999999999999999999765543 1111111 1347789999999 6555 9988 788898888
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcE-EeeCCCCCeEEEEEccCCCCCH
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIR-IVSGGTKSHIILVDLRNKKITG 327 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~-~~~~~~~~~~v~i~~~~~~~~~ 327 (1342)
......+ +++.+.+.++..++.+ .+++++.++++.++++++.+.|.+. ++. +.. +.++++|+.++. ....
T Consensus 239 ~~~~~~~---~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~--~~~~~~~~~~~~-~~~~ 310 (361)
T 3ftb_A 239 KAKQNPW---NINCFAEMAAINCLKD--TNYIEESLLWIKKERKRFIEELNKIGFIKRVFS--PHANFVLCRLEN-ISGE 310 (361)
T ss_dssp HTTSCTT---CSCHHHHHHHHHTSSC--HHHHHHHHHHHHHHHHHHHHHHHHSSSEEEEEC--CSSSEEEEEESS-SCHH
T ss_pred HhhCCCC---CCCHHHHHHHHHHhcC--HHHHHHHHHHHHHHHHHHHHHHHhCCCCceecC--CCCeEEEEEcCC-CCHH
Confidence 7754433 3444455554444432 2467788899999999999999987 676 433 456678888876 2344
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++...+++ +||.+.++..++... .+++|++++
T Consensus 311 ~l~~~l~~-~gi~v~~g~~~~~~~----~~~iRis~~ 342 (361)
T 3ftb_A 311 KLYDSLLK-EDIVIRRCCNFIGLD----DSFVRFAIK 342 (361)
T ss_dssp HHHHHHHT-TTEECEECTTSTTCC----TTEEEEECC
T ss_pred HHHHHHHH-CCeEEeeCccCCCCC----CCEEEEEcC
Confidence 55555555 499999875443221 457999987
No 113
>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*
Probab=99.82 E-value=1.9e-19 Score=217.72 Aligned_cols=327 Identities=16% Similarity=0.171 Sum_probs=214.5
Q ss_pred cCceeee-ecCCCCcHHHHHHHhHHHH--hccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 27 NNNIELI-ASENYTSLAVMEAQGTLLT--NKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 27 ~~~i~l~-a~~n~l~~~v~eal~~~l~--~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.+.+-+. ++....++.+++++.+.+. +.+ +++....+.......+..+.+++++++++|.+ +.+++++||++|+
T Consensus 21 ~~~iyld~~~~~~~~~~v~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~ 98 (423)
T 3lvm_A 21 KLPIYLDYSATTPVDPRVAEKMMQFMTMDGTF--GNPASRSHRFGWQAEEAVDIARNQIADLVGADPREIVFTSGATESD 98 (423)
T ss_dssp CSSEECBTTTCCCCCHHHHHHHTTSSSTTSCC--SCTTCTTSHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESSHHHHH
T ss_pred CCCEeecCCCcCCCCHHHHHHHHHHHhhcccc--cCCCccccchhHHHHHHHHHHHHHHHHHcCCCCCeEEEeCChHHHH
Confidence 3444444 3345677789999888775 333 33332122223344566677888999999987 4556666999999
Q ss_pred HHHHHHccC----CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 103 QAVFFSVLN----PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 103 ~~al~al~~----pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
..++.++.. +||+|+++...++++......+...|. +++.++.++++.+|++++++.+++ +++++++++++++
T Consensus 99 ~~a~~~l~~~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~np 175 (423)
T 3lvm_A 99 NLAIKGAANFYQKKGKHIITSKTEHKAVLDTCRQLEREGF--EVTYLAPQRNGIIDLKELEAAMRD-DTILVSIMHVNNE 175 (423)
T ss_dssp HHHHHHHHHHHTTTCCEEEEETTSCHHHHHHHHHHHHTTC--EEEEECCCTTSCCCHHHHHHHCCT-TEEEEECCSBCTT
T ss_pred HHHHHHHHHhhccCCCEEEECCccchHHHHHHHHHHHcCC--EEEEeccCCCCccCHHHHHHhcCC-CcEEEEEeCCCCC
Confidence 999998874 899999888777665444444455566 556667777888999999999875 4577777666555
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~ 254 (1342)
...++++|+++|++||++||+|++|+.+.... .... .+|++++|+||++ |+.| |+++++++..+.+.....
T Consensus 176 tG~~~~l~~i~~l~~~~~~~li~Dea~~~~~~~~----~~~~~~~di~~~s~sK~~-g~~g~G~~~~~~~~~~~~~~~~~ 250 (423)
T 3lvm_A 176 IGVVQDIAAIGEMCRARGIIYHVDATQSVGKLPI----DLSQLKVDLMSFSGHKIY-GPKGIGALYVRRKPRVRIEAQMH 250 (423)
T ss_dssp TCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCC----CTTTSCCSEEEEESTTTT-SCSSCEEEEECBTTBCCCCCSSC
T ss_pred CccccCHHHHHHHHHHcCCEEEEEhhhhcCCCCc----ChhhcCCCEEEechHHhc-CCCCeEEEEEeccccCCCCcccc
Confidence 45589999999999999999999998754411 1111 3689999999987 7777 999999876555543222
Q ss_pred ------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC--CeEEEEEccCCCC
Q psy13354 255 ------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK--SHIILVDLRNKKI 325 (1342)
Q Consensus 255 ------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~--~~~v~i~~~~~~~ 325 (1342)
....++++.....++..++.... .+++++.+++.++++++.+.|.+. |+.+..++.. .+++++.+.. .
T Consensus 251 ~~~~~~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~--~ 327 (423)
T 3lvm_A 251 GGGHERGMRSGTLPVHQIVGMGEAYRIAK-EEMATEMERLRGLRNRLWNGIKDIEEVYLNGDLEHGAPNILNVSFNY--V 327 (423)
T ss_dssp SSCTTTTTCCSCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHTTSTTEEEESCSTTBCTTEEEEEETT--S
T ss_pred CCcccccccCCCCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCccccCCCeEEEEeCC--C
Confidence 12234444555555555544433 357788899999999999999887 7877553221 2455555532 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCC-------------Ccccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPE-------------KPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~-------------~~~~~~~lRi~~~~~~t 368 (1342)
+.+.+...+.+ |.+.++..+.... .....+.+|++++..++
T Consensus 328 ~~~~l~~~l~~--i~v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t 381 (423)
T 3lvm_A 328 EGESLIMALKD--LAVSSGSACTSASLEPSYVLRALGLNDELAHSSIRFSLGRFTT 381 (423)
T ss_dssp CHHHHHHHTTT--EECBCCCC-----CCCCHHHHHHTCCHHHHHTEEEEECCTTCC
T ss_pred CHHHHHHHHhh--heeccCccccCCCccccHHHHHhCCCccccCceEEEECCCCCC
Confidence 34444555544 7766543211100 00013579999886554
No 114
>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}
Probab=99.82 E-value=2.6e-19 Score=216.46 Aligned_cols=309 Identities=14% Similarity=0.148 Sum_probs=196.0
Q ss_pred CceeeeecC------CC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCH
Q psy13354 28 NNIELIASE------NY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~------n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sG 98 (1342)
+.+++..++ ++ .++.+.+++.+.... ...+ |+...+..++++++.+++....+.+ ..+++++||
T Consensus 39 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~~~~------y~~~~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~g~ 111 (418)
T 3rq1_A 39 NVVNGTLGAIHDEEGNLVFLKTVKEEYLSLSDS-EHVG------YAPIAGIPDFLCAAEKECFGNFRPEGHIRSIATAGG 111 (418)
T ss_dssp GCEECCSSCCBCTTSCBCCCHHHHHHHHTCCHH-HHHS------CCCTTCCHHHHHHHHHHHHGGGCCSSEEEEEEESHH
T ss_pred CeEECCCCcccCCCCCccccHHHHHHHHHhccc-ccCC------CCCCCChHHHHHHHHHHHhcccCccccccEEECCch
Confidence 557887774 33 444477775543221 1112 2333345688887777777666655 144555499
Q ss_pred HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHh----cCCeEEEEc
Q psy13354 99 SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKK----NKPKLIIAG 173 (1342)
Q Consensus 99 s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~----~~~~liv~~ 173 (1342)
++|+..++.++++|||+|+++.+.++ .+...+...|. +++.++.+ +++.+|++.+++.+++ .++.+++++
T Consensus 112 ~~al~~~~~~l~~~gd~Vl~~~p~~~---~~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~~~~~~~~~~vi~~ 186 (418)
T 3rq1_A 112 TGGIHHLIHNYTEPGDEVLTADWYWG---AYRVICSDTGR--TLVTYSLFDEHNNFNHEAFQNRVNELAAKQTNVVVIFN 186 (418)
T ss_dssp HHHHHHHHHHHSCTTCEEEEESSCCT---HHHHHHHHTTC--EEEEECSBCTTSSBCHHHHHHHHHHHHHHCSEEEEEEE
T ss_pred HHHHHHHHHHhcCCCCEEEECCCCch---hHHHHHHHcCC--EEEEEeeeCCCCCcCHHHHHHHHHHhhccCCCEEEEEe
Confidence 99999999999999999998775544 44455566777 45555653 4578999999999876 344467776
Q ss_pred CC-CCC--ccc---CHHHHHHHHH------HcCCEEEEEcccchhhhhcC---CCCCCCCC--Cc---EEEecCCccCCC
Q psy13354 174 AS-AYS--QYI---DFERFYHIAK------NINSYFMVDMAHYAGLIAAG---EYPNPVPF--AD---FITSTTHKSLRG 233 (1342)
Q Consensus 174 ~s-~~~--~~~---~l~~I~~la~------~~gi~LIvDea~~~g~~~~~---~~~~~l~~--~D---ivv~S~sK~l~g 233 (1342)
++ +|| ... .+++|+++|+ +||++||+||+|........ ........ .+ ++++|+||++ |
T Consensus 187 ~p~~NPtG~~~~~~~l~~l~~~~~~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~ 265 (418)
T 3rq1_A 187 TPGNNPTGYSIEDKDWDSILNFLKDLVAIGRNNVIIGIDVAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGF-T 265 (418)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHHHTSSCEEEEEEECTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTT-T
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCC-c
Confidence 55 565 222 4666777777 89999999999854332111 00011111 12 7789999999 6
Q ss_pred CCe---eEEEE---echhHHHHhhccCCc---cccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHH
Q psy13354 234 PRG---GFILM---KKKYKKIINSAVFPG---IQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 234 p~G---G~iv~---~~~l~~~l~~~~~~~---~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
+.| ||+++ ++++++.+....... .+++++...+.++..++.+. .....+.+++++.++++++.+.|
T Consensus 266 ~~G~r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L 345 (418)
T 3rq1_A 266 MYGQRVGAMIGISDDEEIADEFFEVNKSTSRATWSNICRPAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEA 345 (418)
T ss_dssp CCSSCCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcCCcceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCchHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556 99998 788888776532111 11223344444444333221 11133456778889999999999
Q ss_pred HhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 300 ~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.|+++.. +.+++++|+.+. .+.++.. ++.++||.+.++ .+++|++++.
T Consensus 346 ~~~g~~~~~-~~~~~~~~~~~~---~~~~~~~-~l~~~gi~v~~g-----------~~~iRis~~~ 395 (418)
T 3rq1_A 346 AQVGLPMLP-YRGGFFITIPTD---SANAICE-ELKKEHIYVIAL-----------ANGIRIAACG 395 (418)
T ss_dssp HHHTCCCCC-CCSSSEEEEECT---THHHHHH-HHHHTTEECEEC-----------SSEEEEEGGG
T ss_pred HhcCCCCCC-CCceEEEEcCCC---CHHHHHH-HHHhCCEEEecC-----------CCCeEEEEec
Confidence 988887643 456778888764 2345554 566779999874 2469999763
No 115
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Probab=99.82 E-value=9.6e-20 Score=214.25 Aligned_cols=308 Identities=19% Similarity=0.194 Sum_probs=190.9
Q ss_pred ceeeeecCCCCc-HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH
Q psy13354 29 NIELIASENYTS-LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 29 ~i~l~a~~n~l~-~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~ 107 (1342)
.|.+.++.+..+ +.+++++..... + ...|+..+...++++ .+++++|.+.+++++ ||++|+..++.
T Consensus 5 ~i~~~~~~~~~p~~~~~~a~~~~~~-----~---~~~y~~~~~~~~l~~----~la~~~g~~~~~~~~-~gt~a~~~~~~ 71 (347)
T 1jg8_A 5 MIDLRSDTVTKPTEEMRKAMAQAEV-----G---DDVYGEDPTINELER----LAAETFGKEAALFVP-SGTMGNQVSIM 71 (347)
T ss_dssp CEECSCGGGCCCCHHHHHHHHTCCC-----C---CGGGTCCHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHH
T ss_pred EEEeccccCCCCCHHHHHHHhcCCC-----C---CcccCCChHHHHHHH----HHHHHhCCceEEEec-CcHHHHHHHHH
Confidence 356666665544 447777643321 1 112444455555555 889999988776666 99999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cc
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QY 180 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~ 180 (1342)
++++|||+|+++.+.|+..+.........|. +++++ .++++.+|++++++++++. ++++|+++++++| +.
T Consensus 72 ~~~~~gd~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v-~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~ 148 (347)
T 1jg8_A 72 AHTQRGDEVILEADSHIFWYEVGAMAVLSGV--MPHPV-PGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGR 148 (347)
T ss_dssp HHCCTTCEEEEETTCHHHHSSTTHHHHHTCC--EEEEE-CEETTEECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSB
T ss_pred HhcCCCCEEEEcCcchhhhccccchhhccCe--EEEEe-cCCCCccCHHHHHHHhccccccccCceEEEEeccccccCCc
Confidence 9999999999877555432221223455666 44545 3456778999999988752 4577777666554 22
Q ss_pred ----cCHHHHHHHHHHcCCEEEEEcccchhhhh-cCCCCCCC-CCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccC
Q psy13354 181 ----IDFERFYHIAKNINSYFMVDMAHYAGLIA-AGEYPNPV-PFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 181 ----~~l~~I~~la~~~gi~LIvDea~~~g~~~-~~~~~~~l-~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~ 254 (1342)
.++++|+++|++||++||+|++|..+... .+.....+ ..+|.+++|+||+++++.||++++++++++.+.....
T Consensus 149 ~~~~~~l~~i~~~a~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~~~G~~~~~~~~~~~~~~~~~~ 228 (347)
T 1jg8_A 149 VVPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARK 228 (347)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHCCCEEEeehhhhhcchhhcCCChHHhcccccEEEEecccccCCCceEEEEcCHHHHHHHHHHHH
Confidence 24689999999999999999998654321 12111111 1357888899999966766778888888776644222
Q ss_pred CccccCCcHHHHHHH-HHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC-CCCHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAK-AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK-KITGKIAES 332 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aa-a~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~ 332 (1342)
.+..+.......+++ ..++..... .+ ++..++++++.+.|.+.|+.+...+..++++|+.++.. ....++...
T Consensus 229 ~~~~~~~~~~~~~~~~~~~l~~~~~-~~----~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (347)
T 1jg8_A 229 MLGGGMRQAGVLAAAGIIALTKMVD-RL----KEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEA 303 (347)
T ss_dssp HHTCCCSSTHHHHHHHHHHHHHSST-TH----HHHHHHHHHHHHHHHHHTCBCCGGGCCSSEEEEECTTSSSCHHHHHHH
T ss_pred HcCCchhHHHHHHHHHHHHHHHHHH-HH----HHHHHHHHHHHHHHHhcCceeccCCCcceEEEEEcccccCCHHHHHHH
Confidence 221111112222222 233333222 32 23345778888888877776432234567899988642 234466666
Q ss_pred HHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 333 ILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 333 ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+ +||.+.+.. .+++|++++..++
T Consensus 304 l~~-~gi~v~~~~----------~~~iRl~~~~~~~ 328 (347)
T 1jg8_A 304 LRN-SGVLANAVS----------DTEIRLVTHKDVS 328 (347)
T ss_dssp HHH-HTEECEEEE----------TTEEEEECCTTSC
T ss_pred HHH-CCCEEecCC----------CCeEEEEeCCCCC
Confidence 654 599998641 2469998866544
No 116
>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*
Probab=99.82 E-value=8.1e-19 Score=207.48 Aligned_cols=293 Identities=14% Similarity=0.140 Sum_probs=196.3
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~ 104 (1342)
+.|.|..++|+++++ + + +. .... |... ...++++ .+++++|.+ +.+++++||++++..
T Consensus 30 ~~i~l~~~~~~~~~~~~v--a----~~--~~~~------Y~~~-~~~~lr~----~la~~~~~~~~~v~~~~G~~~ai~~ 90 (356)
T 1fg7_A 30 GDVWLNANEYPTAVEFQL--T----QQ--TLNR------YPEC-QPKAVIE----NYAQYAGVKPEQVLVSRGADEGIEL 90 (356)
T ss_dssp CSEECSSCCCSSCCCCCC--C----CC--CTTS------CCCS-SCHHHHH----HHHHHHTSCGGGEEEESHHHHHHHH
T ss_pred ceEEeeCCCCCCCCCHhH--h----hh--hhcc------CCCc-cHHHHHH----HHHHHhCCChHHEEEcCCHHHHHHH
Confidence 458888988876654 3 1 10 1111 2221 1335555 788888877 566677577889999
Q ss_pred HHHHccCCC-CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--ccc
Q psy13354 105 VFFSVLNPG-DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYI 181 (1342)
Q Consensus 105 al~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~ 181 (1342)
++.+++++| |+|+++.+.+++ ....+...|. +++.++.++++.+|++++++.++ +++++++++++|| ...
T Consensus 91 ~~~~~~~~g~d~Vl~~~p~~~~---~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~--~~~~v~l~~p~nptG~~~ 163 (356)
T 1fg7_A 91 LIRAFCEPGKDAILYCPPTYGM---YSVSAETIGV--ECRTVPTLDNWQLDLQGISDKLD--GVKVVYVCSPNNPTGQLI 163 (356)
T ss_dssp HHHHHCCTTTCEEEECSSSCTH---HHHHHHHHTC--EEEECCCCTTSCCCHHHHHTSCT--TEEEEEEESSCTTTCCCC
T ss_pred HHHHHhCCCCCEEEEeCCChHH---HHHHHHHcCC--EEEEeeCCCCCCCCHHHHHHHhc--CCCEEEEeCCCCCCCCCC
Confidence 999999999 999977655544 3444455566 55666766677899999998776 4567777677766 233
Q ss_pred C---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhcc
Q psy13354 182 D---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAV 253 (1342)
Q Consensus 182 ~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~ 253 (1342)
+ +++|+++|+ +|++||+||+|..+.. ........+ ..+++++|+||++ |+.| ||+++++++++.+....
T Consensus 164 ~~~~l~~l~~~~~-~~~~li~De~~~~~~~-~~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~l~~~~ 240 (356)
T 1fg7_A 164 NPQDFRTLLELTR-GKAIVVADEAYIEFCP-QASLAGWLAEYPHLAILRTLSKAF-ALAGLRCGFTLANEEVINLLMKVI 240 (356)
T ss_dssp CHHHHHHHHHHHT-TTCEEEEECTTGGGSG-GGCSGGGTTTCTTEEEEEESSSTT-CCGGGCCEEEEECHHHHHHHHHHS
T ss_pred CHHHHHHHHHhCC-CCCEEEEEccchhhcC-CCcHHHHHhhCCCEEEEecchHhh-cCchhhhEEEEeCHHHHHHHHHhc
Confidence 4 566667777 9999999999985431 111111111 2468899999999 6666 99999999988887754
Q ss_pred CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeCCCCCeEEEEEccCCCCCHHHHH
Q psy13354 254 FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSGGTKSHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 254 ~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~~~~~~~v~i~~~~~~~~~~~~~ 331 (1342)
.++ +.+.+.+.++..++.+...+++++.++++.++++++.+.|.+.+ +.+ .+..++++|+.++ ...++..
T Consensus 241 ~~~---~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~---~~~~l~~ 312 (356)
T 1fg7_A 241 APY---PLSTPVADIAAQALSPQGIVAMRERVAQIIAEREYLIAALKEIPCVEQV--FDSETNYILARFK---ASSAVFK 312 (356)
T ss_dssp CSS---CSCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEEE--CCCSSSEEEEEET---THHHHHH
T ss_pred CCC---CCCHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhCCCceEE--CCCCCeEEEEECC---CHHHHHH
Confidence 444 23344555544444332111367788889999999999999876 333 2456778899886 2345566
Q ss_pred HHHHHCCceeee-ccCCCCCCCcccccccccccc
Q psy13354 332 SILESANIICNK-NSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 332 ~ll~~~GI~v~~-~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
.+ .++||.+.+ +..++. .+++|++++
T Consensus 313 ~L-~~~gI~v~~~g~~~~~------~~~iRis~~ 339 (356)
T 1fg7_A 313 SL-WDQGIILRDQNKQPSL------SGCLRITVG 339 (356)
T ss_dssp HH-HHTTEECEECTTSTTC------TTEEEEECC
T ss_pred HH-HHCCEEEEECCCCCCC------CCeEEEEeC
Confidence 55 567999998 544442 246999986
No 117
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}
Probab=99.82 E-value=2.3e-19 Score=215.66 Aligned_cols=303 Identities=21% Similarity=0.179 Sum_probs=198.6
Q ss_pred cchHHH---HHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHh
Q psy13354 11 IDPKIW---EIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 11 ~~~~~~---~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~ 86 (1342)
+++.+. +.+..+.+++...+...+..|. +.|++++.+........+. ...|.+ ..+...++ +.+++++
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~n~--~~Vl~a~~~~~~~~~~~~~--~~gy~Y~~~g~~~Le----~~lA~l~ 87 (427)
T 3hvy_A 16 INERVLELYERALNDVEKEFKYYDEIREYNQ--LKVLKAFQEERISESHFTN--SSGYGYNDIGRDSLD----RVYANIF 87 (427)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCC--CCTTCTTCHHHHHHH----HHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHhccc--CcCCCCCchhHHHHH----HHHHHHh
Confidence 345555 5555555555555666666665 6688888776432221111 222222 22344455 4899999
Q ss_pred CCCCceEe--cCCHHHHHHHHHHHccCCCCEEEEee-ccCCccchhh--------HHhhhCCceeEEEEecCCCCCCCCH
Q psy13354 87 NAEAANVQ--PHSGSQANQAVFFSVLNPGDTIMGMS-LQEGGHLTHG--------MMLNMSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 87 g~~~~vi~--~~sGs~A~~~al~al~~pGD~Vlv~~-~~~~~~~s~~--------~~~~~~g~~~~~v~~~~~~~~~id~ 155 (1342)
|.+.++++ ++||++|+..++.++++|||+|++.. ..++++.... ..+...|. +++.++. +++.+|+
T Consensus 88 g~e~alv~p~~~sGt~A~~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~-~~~~~d~ 164 (427)
T 3hvy_A 88 NTESAFVRPHFVNGTHAIGAALFGNLRPNDTMMSICGMPYDTLHDIIGMDDSKKVGSLREYGV--KYKMVDL-KDGKVDI 164 (427)
T ss_dssp TCSEEEEETTCCSHHHHHHHHHHHTCCTTCEEEECSSSCCGGGHHHHTCCTTCCSCCTGGGTC--EEEECCC-BTTBCCH
T ss_pred CCCceEEeCCCCcHHHHHHHHHHHhcCCCCEEEEeCCCCchhHHHHhccccchhhhHHHHcCC--EEEEecC-CCCCcCH
Confidence 99988773 34999999999999999999999876 5555443221 22334455 5555566 6788999
Q ss_pred HHHHHHHHh-cCCeEEEEcC----CCCC--cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEe
Q psy13354 156 KKVEYLAKK-NKPKLIIAGA----SAYS--QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITS 225 (1342)
Q Consensus 156 e~Le~~i~~-~~~~liv~~~----s~~~--~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~ 225 (1342)
+++++++++ .++++|++++ ++++ ...++++|+++|++ +|++|++|++|+.+.+. ..+.. .+|++++
T Consensus 165 e~l~~~i~~~~~tklV~i~~s~gyp~nptg~v~dl~~i~~ia~~~~~g~~livD~a~~~~~~~----~~p~~~gaDiv~~ 240 (427)
T 3hvy_A 165 NTVKEELKKDDSIKLIHIQRSTGYGWRKSLRIAEIAEIIKSIREVNENVIVFVDNCYGEFVEE----KEPTDVGADIIAG 240 (427)
T ss_dssp HHHHHHHHHCTTEEEEEEESSCCSSSSCCCCHHHHHHHHHHHHHHCSSSEEEEECTTCTTTSS----SCGGGGTCSEEEE
T ss_pred HHHHHHhhCCCCCEEEEEECCCCCCCCccccHHHHHHHHHHHHHhCCCCEEEEECCccccccC----CCCcccCCeEEEE
Confidence 999999984 4677888776 5555 44589999999999 89999999999766531 12222 3799999
Q ss_pred cCCccCCC---CCeeEEEEechhHHHHhhccCCcccc--CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHH
Q psy13354 226 TTHKSLRG---PRGGFILMKKKYKKIINSAVFPGIQG--GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300 (1342)
Q Consensus 226 S~sK~l~g---p~GG~iv~~~~l~~~l~~~~~~~~~~--~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~ 300 (1342)
|+||+++| +.||++++++++++.++........+ ...++..+.+ + .+.+. ....++++..+++.++.+.|+
T Consensus 241 S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~--~-~~gl~-~~~~r~~~~~~~a~~la~~L~ 316 (427)
T 3hvy_A 241 SLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMRS--L-YEGLF-MAPHVTIEAVKGAVFCARIME 316 (427)
T ss_dssp ETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHH--H-HHHHH-HHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHHH--H-HHhHh-HHHHHHHHHHHHHHHHHHHHH
Confidence 99999966 67899999999999887632221111 1111111111 1 11111 234567889999999999999
Q ss_pred hCCcEEeeCCCCCe-----EEEEEccCCCCCHHHHHHHH
Q psy13354 301 QRGIRIVSGGTKSH-----IILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 301 ~~g~~~~~~~~~~~-----~v~i~~~~~~~~~~~~~~ll 334 (1342)
+.|+++.+. .++ ++.+.+.+......+++.+.
T Consensus 317 ~~g~~V~p~--~~~~~~~li~~~~l~~~~~~~~f~~~l~ 353 (427)
T 3hvy_A 317 LAGFDVLPK--YNDKRTDIIQAIKFNDEKKLIDFIKGIQ 353 (427)
T ss_dssp HTTCEEESC--TTSCCSSSEEEEECSSHHHHHHHHHHHH
T ss_pred hCCCeecCC--CCCCCceEEEEEeCCCHHHHHHHHHHhc
Confidence 999988432 344 77888764322233444443
No 118
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Probab=99.81 E-value=2e-19 Score=216.06 Aligned_cols=304 Identities=20% Similarity=0.182 Sum_probs=198.0
Q ss_pred HHHHHHHHHHHhccCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccC-CcchHHHHHHHHHHHHHHHhCCCCce
Q psy13354 14 KIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG-GCKFIDLIEKIAINRLKKIFNAEAAN 92 (1342)
Q Consensus 14 ~~~~~~~~~~~~~~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~-~~~~~~~Le~~~~~~la~~~g~~~~v 92 (1342)
.+++.+.++..++...+...+..|. +.|++++.+........+. +..|. +..+..++++ .+++++|.+.++
T Consensus 21 ~~~~~~~~~~~~~~~~~~~~a~~n~--~~Vl~A~~~~~~~~~~~~~--~~gy~y~~~~~~~Le~----~lA~l~g~e~al 92 (427)
T 3i16_A 21 KLYETAMNDIQNQFKILDDIREFNQ--LKVLNAFQEERISEAHFTN--SSGYGYGDIGRDSLDA----VYARVFNTESAL 92 (427)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHH--HHHHHHHHHTTCCGGGSCC--CCTTCTTCHHHHHHHH----HHHHHHTCSEEE
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCH--HHHHHHHHHhchhHHhcCC--CCCCCCCHHHHHHHHH----HHHHHhCCcceE
Confidence 4445554544444455555555554 5588887664321111111 22232 2333445554 899999999887
Q ss_pred Ee--cCCHHHHHHHHHHHccCCCCEEEEee-ccCCccchhh--------HHhhhCCceeEEEEecCCCCCCCCHHHHHHH
Q psy13354 93 VQ--PHSGSQANQAVFFSVLNPGDTIMGMS-LQEGGHLTHG--------MMLNMSGKWFNSICYGLNKKEKIDYKKVEYL 161 (1342)
Q Consensus 93 i~--~~sGs~A~~~al~al~~pGD~Vlv~~-~~~~~~~s~~--------~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~ 161 (1342)
++ ++||++|+..++.++++|||+|++.. ..++++.... ..+...|. +++.++.+++|.+|+++++++
T Consensus 93 v~p~~~sGt~Ai~~al~all~pGD~Vl~~~~~~y~~~~~~~g~~~~~~~~~l~~~G~--~~~~v~~~~~g~~D~e~l~~~ 170 (427)
T 3i16_A 93 VRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMGSLKEFGI--NYKQVDLKEDGKPNLEEIEKV 170 (427)
T ss_dssp EETTCCSHHHHHHHHHHHHCCTTCEEEESSSSCCGGGHHHHTCSCCCSSCCTGGGTC--EEEECCCCTTSSCCHHHHHHH
T ss_pred EeCCCccHHHHHHHHHHHHhCCCCEEEEeCCCccHHHHHHHhccccchHHHHHHcCC--EEEEecCccCCCcCHHHHHHH
Confidence 73 34999999999999999999999876 5565543222 23344455 666667777888999999999
Q ss_pred HHh-cCCeEEEEcC----CCCC--cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 162 AKK-NKPKLIIAGA----SAYS--QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 162 i~~-~~~~liv~~~----s~~~--~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
+++ .++++|++++ ++++ ...++++|+++|++ +|+++++|++|+.+.+. ..+.. .+|++++|+||++
T Consensus 171 l~~~~~tklV~i~~s~~~p~nptg~i~dl~~i~~la~~~~~g~~livD~a~~~~~~~----~~p~~~gaDiv~~S~sK~l 246 (427)
T 3i16_A 171 LKEDESITLVHIQRSTGYGWRRALLIEDIKSIVDCVKNIRKDIICFVDNCYGEFMDT----KEPTDVGADLIAGSLIKNI 246 (427)
T ss_dssp HHTCTTEEEEEEECSCCSSSSCCCCHHHHHHHHHHHHHHCTTSEEEEECTTTTTSSS----SCGGGGTCSEEEEETTSGG
T ss_pred hhCCCCCEEEEEEcCCCCCCCCcccHHHHHHHHHHHHHhCCCCEEEEECCCcccccc----CCccccCCeEEEecCcccC
Confidence 984 3567777766 5555 44589999999999 99999999999766531 11222 3799999999999
Q ss_pred CC---CCeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee
Q psy13354 232 RG---PRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS 308 (1342)
Q Consensus 232 ~g---p~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~ 308 (1342)
+| +.||++++++++++.++........+....+...++.++ .+.+. ....++++..+++.++.+.|++.|+++.+
T Consensus 247 gg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~~~-l~gl~-~~~~r~~~~~~~a~~la~~L~~~g~~V~p 324 (427)
T 3i16_A 247 GGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTFGVVRSM-YQGLF-LAPHISMEALKGAILCSRIMELAGFEVMP 324 (427)
T ss_dssp GTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCEEES
T ss_pred CCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccHHHHHHH-HHHHH-HHHHHHHHHHHHHHHHHHHHHhCCCeecC
Confidence 66 677999999999998876322222221111101111112 22221 34467889999999999999999998743
Q ss_pred CCCCCe-----EEEEEccCCCCCHHHHHHHHH
Q psy13354 309 GGTKSH-----IILVDLRNKKITGKIAESILE 335 (1342)
Q Consensus 309 ~~~~~~-----~v~i~~~~~~~~~~~~~~ll~ 335 (1342)
..++ ++.+.+.+......+++.+..
T Consensus 325 --~~~~~~~~~i~~i~l~~~~~~~~f~~~l~~ 354 (427)
T 3i16_A 325 --KYDEKRSDIIQSIKFNDKDKLIEFCKGIQT 354 (427)
T ss_dssp --CTTSCCSSSCEEEECSSHHHHHHHHHHHHH
T ss_pred --CCCCCCccEEEEEEECCHHHHHHHHHHHhh
Confidence 2444 778887643323344444443
No 119
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Probab=99.81 E-value=1.8e-18 Score=206.45 Aligned_cols=290 Identities=16% Similarity=0.141 Sum_probs=194.4
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC
Q psy13354 69 KFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN 148 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~ 148 (1342)
....++.+++++.+++++|.++.+++++|||+|+++++.. +.+||+|+++...+.++ .........|...+++.++.+
T Consensus 31 ~~~~~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~-~~~gd~vi~~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~ 108 (379)
T 3ke3_A 31 KAFQEVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQ-LTIDEDCLIIRNGWFSY-RWTQILEKGKFAKSSTVLTAE 108 (379)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHH-HCTTCEEEEEECSHHHH-HHHHHHHHHCCSSEEEEEECE
T ss_pred HHHHHHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHh-CCCCCeEEEEeCCchhH-HHHHHHHHhCCCCceEEEecc
Confidence 4445777778999999999987788888999999998855 47999999877544332 122233444543344444432
Q ss_pred C--------C-CCCCHHHHHHHHHhcCCeEEEEcC-CCCC-cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC
Q psy13354 149 K--------K-EKIDYKKVEYLAKKNKPKLIIAGA-SAYS-QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP 214 (1342)
Q Consensus 149 ~--------~-~~id~e~Le~~i~~~~~~liv~~~-s~~~-~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~ 214 (1342)
. . +.+|++++++.+.+.+++++++.. .+.. ...| +++|+++|++||+++|+|++|+ |.. ..
T Consensus 109 ~~g~~~~~~~~~~~d~~~l~~~i~~~~~~~v~~~~~~~~~G~~~~~~~l~~i~~~~~~~~~~li~D~~~~-g~~----~~ 183 (379)
T 3ke3_A 109 RTEDTEAPKPFAPVDIETAVAKIKEDKSAIVYAPHVETSSGIILSEEYIKALSEAVHSVGGLLVIDCIAS-GCV----WL 183 (379)
T ss_dssp ESSCCSSCCCEECCCHHHHHHHHHHHTCSEEEEESEETTTTEECCHHHHHHHHHHHHHTTCEEEEECTTC-TTC----CC
T ss_pred ccccccccCCCCCCCHHHHHHHHhhcCCcEEEEEeecCCCceeCCHHHHHHHHHHHHHcCCEEEEEeccc-CCc----cc
Confidence 1 1 258999999999654555555433 3333 4447 9999999999999999999987 532 11
Q ss_pred CCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-CCcc--------------------ccCCcHHHHHHHHH
Q psy13354 215 NPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV-FPGI--------------------QGGPLMHVIAAKAV 271 (1342)
Q Consensus 215 ~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~-~~~~--------------------~~~~~~~~~~Aaa~ 271 (1342)
.... .+|++++|+||+++||.| |++++++++++.+.... .++. .++++.+.++++.+
T Consensus 184 ~~~~~~~d~~~~s~~K~l~~~~g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~~~~~a~~a 263 (379)
T 3ke3_A 184 DMKELGIDVLISAPQKGWSSTPCAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPTDSLRQFRD 263 (379)
T ss_dssp CHHHHTCSEEEECTTTTTCSCCCEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCHHHHHHHHH
T ss_pred cccccCCCEEEecchhhcCCCCceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCHHHHHHHHH
Confidence 1111 379999999999988877 99999999888876421 1111 12556666666666
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC-CCe-EEEEEccCCCCCHHH-HHHHHHHCCceeeeccCCC
Q psy13354 272 AFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT-KSH-IILVDLRNKKITGKI-AESILESANIICNKNSIPN 348 (1342)
Q Consensus 272 al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~-~~~-~v~i~~~~~~~~~~~-~~~ll~~~GI~v~~~~~p~ 348 (1342)
++......+++++.+++.++++++++.|.+.|+++..++. ..+ +..+..++ .+. ....|.++||.+.++..+.
T Consensus 264 al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~~~~~~~~~~~~i~~~~~~~----~~~~~~~~L~~~Gi~v~~g~~~~ 339 (379)
T 3ke3_A 264 AILEAKEIGFDILRDAQWELGNRVRKVLTDKGIESVAAEGFEAPGVVVSYTER----DDMHKGSAFAEAGLQIAAGVPLK 339 (379)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCBSBCTTCBCSSEEEEECSC----HHHHSSHHHHHTTCCCEECCCCS
T ss_pred HHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCEecCCccccCceEEEEccCC----cchHHHHHHHHCCeEEeCCcccc
Confidence 6655554457888999999999999999999988755321 133 33333322 122 1445566799999876544
Q ss_pred CCCCcccccccccccccccccc
Q psy13354 349 DPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 349 ~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
... +...+.+|++++..++.+
T Consensus 340 ~~~-~~~~~~lRis~~~~~t~~ 360 (379)
T 3ke3_A 340 VGE-PDNFKTFRLGLFGLDKLT 360 (379)
T ss_dssp SCC-CTTCCEEEEECCSHHHHT
T ss_pred ccc-cCcCCEEEEeCCcCCCHH
Confidence 311 112467999998877643
No 120
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.81 E-value=1.9e-19 Score=222.77 Aligned_cols=231 Identities=17% Similarity=0.269 Sum_probs=181.2
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcC----------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKK----------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGI 442 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~----------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~ 442 (1342)
..|++||+|.+|++++|++.+++.|.+++... ..++++||+||+|+|||++|+++++.+++
T Consensus 27 ~lW~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~--- 103 (516)
T 1sxj_A 27 KLWTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGY--- 103 (516)
T ss_dssp CCHHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTC---
T ss_pred CCcccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCC---
Confidence 46999999999999999999999999998751 14578999999999999999999999863
Q ss_pred CCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhh--------------cCccCCceEEEeccC
Q psy13354 443 DGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY--------------APINARYKIYVIDEV 508 (1342)
Q Consensus 443 ~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~--------------~p~~~~~rvviIDE~ 508 (1342)
.+++++++.......+...+..... .+..+.+.||+|||+
T Consensus 104 --------------------------~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEi 157 (516)
T 1sxj_A 104 --------------------------DILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEV 157 (516)
T ss_dssp --------------------------EEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSG
T ss_pred --------------------------CEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECC
Confidence 4667777655544433333322110 012256789999999
Q ss_pred ccCCHH---HHHHHHHhhcCCCCcEEEEEEeCCCC-CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHH
Q psy13354 509 HMLTHH---AFNAMLKTLEEPPKYIKFILATTEPQ-KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALN 584 (1342)
Q Consensus 509 ~~L~~~---~~~~Ll~~Le~p~~~~vlIl~t~~~~-kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~ 584 (1342)
|.+... ..+.|++++++.... +|++++... ...+++.+||..+.|.+++.+++.+++..++.++++.+++++++
T Consensus 158 d~l~~~~~~~l~~L~~~l~~~~~~--iIli~~~~~~~~l~~l~~r~~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~ 235 (516)
T 1sxj_A 158 DGMSGGDRGGVGQLAQFCRKTSTP--LILICNERNLPKMRPFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVID 235 (516)
T ss_dssp GGCCTTSTTHHHHHHHHHHHCSSC--EEEEESCTTSSTTGGGTTTSEEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHH
T ss_pred CccchhhHHHHHHHHHHHHhcCCC--EEEEEcCCCCccchhhHhceEEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 998653 347888888875444 455555433 34467899999999999999999999999999999999999999
Q ss_pred HHHHhcCCcHHHHHHHHHHHHhhcCCCCCHHHHHHHhc---cCcHHHHHHHHHHHHccCh
Q psy13354 585 LIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLS---IIDQKYLIQILDALAEQDG 641 (1342)
Q Consensus 585 ~La~~~~g~lr~a~~~L~kl~~~~~~~It~e~V~~~v~---~~~~~~if~l~dal~~~~~ 641 (1342)
.|++.++||+|.+++.|+.+.. ....|+.++|.+++. ......+|++++.+..++.
T Consensus 236 ~la~~s~GdiR~~i~~L~~~~~-~~~~It~~~v~~~~~~~~~~~~~~~f~~~~~il~~~~ 294 (516)
T 1sxj_A 236 RLIQTTRGDIRQVINLLSTIST-TTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQI 294 (516)
T ss_dssp HHHHHTTTCHHHHHHHHTHHHH-HSSCCCTTHHHHHHHHHHTTTTSHHHHHHHHHTBGGG
T ss_pred HHHHHcCCcHHHHHHHHHHHHh-cCCCCchHHHHHHHHhhccCCCCCHHHHHHHHhcCCc
Confidence 9999999999999999987653 556799999998886 3334588999999987653
No 121
>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Probab=99.81 E-value=2e-19 Score=212.49 Aligned_cols=316 Identities=12% Similarity=0.094 Sum_probs=197.6
Q ss_pred hccCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 25 RQNNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 25 ~~~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+....+.+.+++|++ +|.+.+++.+.+. ...|+..+...++++ ++++++|.+..++++ ||++|+
T Consensus 11 ~~~~~~~~~~~~~~~g~~p~v~~ai~~~~~---------~~~~~~~~~~~~l~~----~la~~~~~~~~i~~~-~g~~a~ 76 (359)
T 3pj0_A 11 QKTPYKLGGNGPRNVGVLTEALQNIDDNLE---------SDIYGNGAVIEDFET----KIAKILGKQSAVFFP-SGTMAQ 76 (359)
T ss_dssp HTCSEESSSSSCCBHHHHHHHTTTSCTTCB---------CCBTTBSHHHHHHHH----HHHHHHTCSEEEEES-CHHHHH
T ss_pred HhcchhhcCCCccccCCCHHHHHHHHhhcc---------cCcccCCHHHHHHHH----HHHHHhCCCcEEEeC-CHHHHH
Confidence 444556677788887 4447777555221 122334444455555 899999998776665 999999
Q ss_pred HHHHHHccCCCCE--EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 103 QAVFFSVLNPGDT--IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~--Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
..++.+++.+||. |++.+..+.............|. ++++++. +++.+|+++++++ ..+++++++++++++
T Consensus 77 ~~a~~~~~~~g~~~vvi~~~~~~~~~~~~~~~~~~~g~--~~~~v~~-~~~~~d~~~l~~~--~~~~~~v~~~~p~n~~~ 151 (359)
T 3pj0_A 77 QIALRIWADRKENRRVAYHPLSHLEIHEQDGLKELQQI--TPLLLGT-ANQLLTIDDIKSL--REPVSSVLIELPQREIG 151 (359)
T ss_dssp HHHHHHHHHHHTCCEEEECTTCHHHHSSTTHHHHHHCC--EEEECSC-TTSCCCHHHHHTC--SSCCSEEEEESSBGGGT
T ss_pred HHHHHHHHhcCCCcEEEEeccceeeehhcchHHHhcCc--eEEecCC-cCCCcCHHHHHhc--cCCceEEEEEecccCCC
Confidence 9999999888887 44333222211111111133455 5666665 4678999999988 446777777766544
Q ss_pred -cccC---HHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhc
Q psy13354 179 -QYID---FERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 179 -~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~ 252 (1342)
...+ +++|+++|++||++||+|++|..+.... +.... .....|+++.|+||+++++.||++++++++++.+...
T Consensus 152 G~~~~~~~l~~l~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~l~~~~~~~ 231 (359)
T 3pj0_A 152 GQLPAFEELEKISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGIAGAILAGNDDFVQEAKIW 231 (359)
T ss_dssp SBCCCHHHHHHHHHHHHHHTCEEEEEETTCGGGHHHHTCCHHHHHTTCSEEEEESSSTTCCSSCEEEEECHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHHHcCCEEEEECcchhcchhhhCCCHHHhhccCCEEEEeccccCCCcceEEEECCHHHHHHHHHH
Confidence 2234 5666999999999999999987554211 11110 1123588999999999777778999999998887642
Q ss_pred cCCcccc-CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-CCHHH
Q psy13354 253 VFPGIQG-GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK-ITGKI 329 (1342)
Q Consensus 253 ~~~~~~~-~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~-~~~~~ 329 (1342)
...+..+ .......+++..++.+.. +..+++.++++++.+.|.+. |+++...+..++++|++++... .+.+.
T Consensus 232 ~~~~~~~~~~~~~~~~a~~~~l~~~~-----~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 306 (359)
T 3pj0_A 232 KRRYGGDLISLYPYILSADYYFEKRI-----GKMAEYFEAAKGLAERFNSCSGVKTVPEVPVSNMFHVYFENSADEIGAI 306 (359)
T ss_dssp HHHTTCCCSCCHHHHHHHHHHHHHHG-----GGHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEESSCHHHHHHH
T ss_pred HHHhCCCcchhHHHHHHHHHHHHHHH-----HHhHHHHHHHHHHHHHHhhCCCceeeccCCcceEEEEEecCccchhHHH
Confidence 2111111 111233333333443332 23455778889999999986 8887534567788888886532 12344
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+.+.++||.+.++..+..++ .+++|+++.....
T Consensus 307 l~~~l~~~GV~v~~g~~~~~~~----~~~~r~~i~~~~~ 341 (359)
T 3pj0_A 307 LTKIQDETGVGISGYLQEKSAD----VCAFEVSVGDAFA 341 (359)
T ss_dssp HHHHHHHHCEECCSCCEEEETT----EEEEEEECCTTGG
T ss_pred HHHHHHhcCcEecCCccccCCC----ceEEEEEecCccc
Confidence 4455555699999875544332 3568887765433
No 122
>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}
Probab=99.81 E-value=2.3e-19 Score=215.28 Aligned_cols=296 Identities=14% Similarity=0.107 Sum_probs=201.9
Q ss_pred ecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--
Q psy13354 34 ASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-- 110 (1342)
Q Consensus 34 a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-- 110 (1342)
++....++.+++++.+.+...+ +++.+ .+.......+..+++++++++++|.+ +.+++++||++|+..++.+++
T Consensus 27 ~~~~~~~~~v~~a~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~ 103 (400)
T 3vax_A 27 AATTRVDQRVADIVLHWMTAEF--GNAGS-RHEYGIRAKRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPY 103 (400)
T ss_dssp CCCSSSCHHHHHHHHHHHHHHH--SCSSC-HHHHHHHHHHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhcc--CCCcc-cchhHHHHHHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHh
Confidence 3345677889999998886443 23322 22223334566677888999999987 556667699999999999998
Q ss_pred --CCCC-EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHH
Q psy13354 111 --NPGD-TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFER 185 (1342)
Q Consensus 111 --~pGD-~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~ 185 (1342)
++|| +|+++...++++......+...|. +++.++.++++.+|++++++++++ +++++++++++++ ...++++
T Consensus 104 ~~~~gd~~Vl~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~ 180 (400)
T 3vax_A 104 GERTGRRHIITSAIEHKAVLEPLEHLAGRGF--EVDFLTPGPSGRISVEGVMERLRP-DTLLVSLMHVNNETGVIQPVAE 180 (400)
T ss_dssp HHHHTCCEEEEETTSCHHHHHHHHHHHTTTC--EEEEECCCTTCCCCHHHHHTTCCT-TEEEEECCSBCTTTCBBCCHHH
T ss_pred hccCCCCEEEECccccHhHHHHHHHHHhcCC--eEEEEccCCCCCcCHHHHHHhcCC-CceEEEEECCCCCceeeCcHHH
Confidence 8999 999888777766555544444566 566667777888999999998875 4577777666665 4558999
Q ss_pred HHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEE-Eech-hH---HHHhhccC-----
Q psy13354 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFIL-MKKK-YK---KIINSAVF----- 254 (1342)
Q Consensus 186 I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv-~~~~-l~---~~l~~~~~----- 254 (1342)
|.++|++||++||+|++|+.+...... ... +|++++|+||++ |+.| |+++ ++++ +. ..+.....
T Consensus 181 i~~la~~~~~~li~D~a~~~~~~~~~~--~~~--~d~~~~s~~K~~-g~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (400)
T 3vax_A 181 LAQQLRATPTYLHVDAAQGYGKVPGDL--TTP--IDMISISGHKIG-APKGVGALVTRRREEMDDERVPLEPIMFGGGQE 255 (400)
T ss_dssp HHHHHTTSSCEEEEECTTTTTTSGGGG--GSC--CSEEEEETGGGT-SCSSCEEEEECBCSSSTTCBCCCCCSSCSSCTG
T ss_pred HHHHHHhcCCEEEEEhhhhcCCCCcCh--hhc--CcEEEEeHHHhC-CCCceEEEEEecchhccccccccCceecCCCce
Confidence 999999999999999999876542211 011 689999999976 7777 8888 7761 11 11211111
Q ss_pred -CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC--CeEEEEEccCCCCCHHHHH
Q psy13354 255 -PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK--SHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 255 -~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~--~~~v~i~~~~~~~~~~~~~ 331 (1342)
....++++.....++..++.... +++++..+++.++++++.+.|...|+.+..+... .+++++.++. ....++..
T Consensus 256 ~~~~~~~~~~~~~~a~~~al~~~~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~ 333 (400)
T 3vax_A 256 RKLRPGTLPVPLIMGLAEAAKIFE-AEHAQWQVAAQDLRSRLLAGLASTSFQVNGDQDHVVPHILNLSFED-VDAEAFLV 333 (400)
T ss_dssp GGTSCSCCCHHHHHHHHHHHHHHH-HSHHHHHHHHHHHHHHHHHHHTTTTCEECSCTTSBCTTEEEEECTT-CCHHHHHH
T ss_pred eeeecCCCCHHHHHHHHHHHHHHH-hhHHHHHHHHHHHHHHHHHhhCCCCEEEeCCcccCCCCEEEEEeCC-CCHHHHHH
Confidence 11234444555555555544333 3678889999999999999998557777543221 3567777664 22344555
Q ss_pred HHHHHCCceeeec
Q psy13354 332 SILESANIICNKN 344 (1342)
Q Consensus 332 ~ll~~~GI~v~~~ 344 (1342)
.+. +||.+.++
T Consensus 334 ~L~--~gi~v~~g 344 (400)
T 3vax_A 334 TLK--DLVAVATG 344 (400)
T ss_dssp HHH--HHHHHTTT
T ss_pred HHh--cCcEEEec
Confidence 555 69988764
No 123
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing protein, flavoprotein, PS protein structure initiative; HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8 e.74.1.1
Probab=99.81 E-value=5.1e-22 Score=238.00 Aligned_cols=252 Identities=14% Similarity=0.117 Sum_probs=173.2
Q ss_pred hHHHHHHHHHHHHHcccCeeEEec-ccceEEEe----CCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCC
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQE-EVDDLIIK----TNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR 879 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~----~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~ 879 (1342)
++..+.+.+.+.+++ .+++|+.+ +|+++..+ ++. ..|.+.+| ++.||.||+||| |.+++..|+
T Consensus 107 ~~~~l~~~L~~~~~~-~Gv~i~~~~~v~~i~~~~~g~~~~-~~v~~~~g-~i~ad~VVlAtG---------~~s~p~~g~ 174 (401)
T 2gqf_A 107 GAEQIVEMLKSECDK-YGAKILLRSEVSQVERIQNDEKVR-FVLQVNST-QWQCKNLIVATG---------GLSMPGLGA 174 (401)
T ss_dssp CTHHHHHHHHHHHHH-HTCEEECSCCEEEEEECCSCSSCC-EEEEETTE-EEEESEEEECCC---------CSSCGGGTC
T ss_pred CHHHHHHHHHHHHHH-CCCEEEeCCEEEEEEcccCcCCCe-EEEEECCC-EEECCEEEECCC---------CccCCCCCC
Confidence 444455556666654 68999766 79999876 555 46888777 799999999999 888887777
Q ss_pred CCCcchHHHHHHHHH-cCCCccccccCCCcc-----------cccCcccccccee-----ecCCCCCCCcccccCCCCCC
Q psy13354 880 FGDFSTTSLAKRLKE-LQLSHGRLKTGTPPR-----------IDKRTIDFSKMEE-----QIGDFDPVPVFSVLGNINLH 942 (1342)
Q Consensus 880 ~g~~~s~~l~~~l~~-~g~~~~~~~~~~~~r-----------~~~~si~~~~~~~-----~~~d~~~~~~f~~~~~~~~~ 942 (1342)
+|+ +..+++ +|+++.+..++..|. +.+.++. ..+.. ..|| +.|||++++||.++
T Consensus 175 ~G~------g~~la~~~G~~i~~~~p~l~~~~~~~~~~~~~~l~g~~~~-~~~~i~G~~~~~g~-~l~t~~g~sG~~~l- 245 (401)
T 2gqf_A 175 TPF------GYQIAEQFGIPVIPPRASLVPFTYRETDKFLTALSGISLP-VTITALCGKSFYNQ-LLFTHRGISGPAVL- 245 (401)
T ss_dssp CSH------HHHHHHHTTCCEEEEEEESCCEECCGGGGGGGGGTTCEEE-EEEEETTSCEEEEE-EEECSSEEESHHHH-
T ss_pred ChH------HHHHHHHCCCCcccCcceeeceecCCchhhcccCCCeeee-eEEEEcCCceEEeC-EEEECCCccHHHHH-
Confidence 665 455544 788876665554322 2233321 11111 3478 99999999999877
Q ss_pred CCccccchhhcchhHHHHHHhhcccCCCCcc-ccc-ccc-CCCCCCcccccccCCCCCccceeEeecccccceeecCccc
Q psy13354 943 PKQLSCFITHTNEKTHNIIRSEFKNSPIFSG-KIE-SIG-PRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGIS 1019 (1342)
Q Consensus 943 ~~~~~c~~~~~~~~~~~~i~~~~~~~p~~~~-~~~-~~g-~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g~~ 1019 (1342)
++|+++... ....+|+.|.++. ++. ..- ++ .+|-++...+...+-.+.+..++...+. +...
T Consensus 246 --~~s~~~~~~-------~~~~i~~~p~~~~~~~~~~~~~~~-----~~~~~~~~l~~~lp~~~~~~~~~~~~~~-~~~~ 310 (401)
T 2gqf_A 246 --QISNYWQPT-------ESVEIDLLPNHNVEEEINQAKQSS-----PKQMLKTILVRLLPKKLVELWIEQGIVQ-DEVI 310 (401)
T ss_dssp --HHTTTCCTT-------CCEEEESCSSSCHHHHHHHHHHHC-----TTSBHHHHHTTTSCHHHHHHHHHTTSSC-CCBG
T ss_pred --HHHHHHhcC-------CEEEEECCCCCCHHHHHHHHhhhc-----ccccHHHHhhhhcCHHHHHHHHHHcCCC-CCch
Confidence 788887641 3455688888872 220 000 00 0111111111111222333334433343 4566
Q ss_pred cCCCHHHHHHHHHhcccc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHH-----
Q psy13354 1020 TSLPFEAQIELVQSIDGM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYE----- 1084 (1342)
Q Consensus 1020 ~~l~~~~q~~~~~~i~gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~----- 1084 (1342)
.++++++..++.+.|+.+ ++|+||.+|+++++ |||+ |||||.+||||||||++|++|++
T Consensus 311 ~~~~~~~~~~l~~~l~~~~~~~~g~~~~~~a~vt~GGv~~~~--~~~~----tmes~~~~gly~~GE~ldv~g~~GGynl 384 (401)
T 2gqf_A 311 ANISKVRVKNLVDFIHHWEFTPNGTEGYRTAEVTMGGVDTKV--ISSK----TMESNQVSGLYFIGEVLDVTGWLGGYNF 384 (401)
T ss_dssp GGCCHHHHHHHHHHHHCEEECCSEECCTTTCSEEEEEECGGG--BCTT----TCBBSSSTTEEECGGGBSCEECTTTHHH
T ss_pred hhCCHHHHHHHHHHHhcCEEEecccCCcceeEEeCCcccccc--CChh----hccccCCCCEEEEEEeEEeccCCCCHHH
Confidence 889999999999988655 99999999999999 9999 99999999999999999999988
Q ss_pred -HHHHHHHHHHHHHH
Q psy13354 1085 -EAASQGLLAGLNAA 1098 (1342)
Q Consensus 1085 -eA~~~G~~Ag~na~ 1098 (1342)
.||++|++||.+||
T Consensus 385 q~a~~sg~~ag~~~~ 399 (401)
T 2gqf_A 385 QWAWSSAYACALSIS 399 (401)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHh
Confidence 49999999999986
No 124
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}
Probab=99.81 E-value=2.2e-19 Score=212.17 Aligned_cols=309 Identities=12% Similarity=0.086 Sum_probs=194.6
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCC
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNP 112 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~p 112 (1342)
..+.++..+.+++++.+. +. +..+...|+..+...++++ ++++++|.+..++++ ||++|+..++.+++.+
T Consensus 16 ~~~~~p~~~~~~~~~~~~----~~-~~~~~~~y~~~~~~~~l~~----~la~~~~~~~~i~~~-~G~~a~~~al~~~~~~ 85 (357)
T 3lws_A 16 ISGHGKRNVGVLKTAFAA----VA-DEMASDQYGTGAIIEPFEQ----KFADVLGMDDAVFFP-SGTMAQQVALRIWSDE 85 (357)
T ss_dssp SSBSSCCBHHHHHHHHTT----SC-TTCBCEETTEETTHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHHHHH
T ss_pred ccCCCCCCHHHHHHHHHH----hh-cccCcccccCChHHHHHHH----HHHHHhCCCcEEEec-CcHHHHHHHHHHHhhc
Confidence 345555555544443332 21 1122344555666667776 888899988776665 9999999999999988
Q ss_pred CC--EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc-c---CHH
Q psy13354 113 GD--TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY-I---DFE 184 (1342)
Q Consensus 113 GD--~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~-~---~l~ 184 (1342)
|| .|++.+..+.............|. ++++++. +++.+|+++++++. . +++++++++++| +. . +++
T Consensus 86 gd~~~vi~~~~~~~~~~~~~~~~~~~g~--~~~~v~~-~~~~~d~~~l~~~~--~-~~~v~~~~p~np~~G~~~~~~~l~ 159 (357)
T 3lws_A 86 TDNRTVAYHPLCHLEIHEQDGLKELHPI--ETILVGA-ADRLMTLDEIKALP--D-IACLLLELPQREIGGVAPAFSELE 159 (357)
T ss_dssp HTCCEEEECTTCHHHHSSTTHHHHHSSC--EEEECSC-TTSCCCHHHHHTCC--S-CSEEEEESSBGGGTSBCCCHHHHH
T ss_pred CCCcEEEecccceeeeeccchhhhccCc--EEEEecC-CCCCcCHHHHhcCc--C-cceEEEEcccccCCceeCCHHHHH
Confidence 88 666554333322222222334455 5666664 45679999999872 2 667777776654 22 2 599
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhc-CCCCC-CCCCCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccC-C
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAA-GEYPN-PVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGG-P 261 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~-~l~~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~-~ 261 (1342)
+|+++|++||++||+|++|..+.... +.... .....|++++|+||+++||.||++++++++++.+......+..+. .
T Consensus 160 ~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (357)
T 3lws_A 160 TISRYCRERGIRLHLDGARLFEMLPYYEKTAAEIAGLFDSIYISFYKGLGGIAGAILAGPAAFCQTARIWKRRYGGDLIS 239 (357)
T ss_dssp HHHHHHHHTTCEEEEEETTHHHHHHHHTCCHHHHHTTSSEEEEESSSTTCCSSCEEEEECHHHHHHHHHHHHHTTCCCSC
T ss_pred HHHHHHHHcCCEEEEECchhhhhhhhcCCChHHHHhcCCEEEEeccccCCCCceEEEEcCHHHHHHHHHHHHHhcCCccc
Confidence 99999999999999999987332211 11110 112358889999999988888999999988888764321111111 1
Q ss_pred cHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-CCHHHHHHHHHHCCc
Q psy13354 262 LMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK-ITGKIAESILESANI 339 (1342)
Q Consensus 262 ~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~-~~~~~~~~ll~~~GI 339 (1342)
..+..+++..++.+... ..+++.++++++.+.|.+. |+++...++.++++|++++... .+.+.+...+.++||
T Consensus 240 ~~~~~~~~~~~l~~~~~-----~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Gi 314 (357)
T 3lws_A 240 LYPYIVSADYYYELRKD-----RMGQYYEQAKQLAEQFNALPGVHTTPEVPVSNMFHLHFDGQAADISPKLEQVQEETGL 314 (357)
T ss_dssp CHHHHHHHHHHHHHHTT-----CHHHHHHHHHHHHHHHHTSTTEEEESSSCSSSEEEEEEESCHHHHHHHHHHHHHHHCE
T ss_pred chHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHhCCCCeeccCCCcceEEEEEecCChHHHHHHHHHHHHhcCe
Confidence 12333333334433222 2344677888999999986 7887444567889999987642 112334455556699
Q ss_pred eeeeccCCCCCCCccccccccccccccc
Q psy13354 340 ICNKNSIPNDPEKPYFTSGIRLGSSAIT 367 (1342)
Q Consensus 340 ~v~~~~~p~~~~~~~~~~~lRi~~~~~~ 367 (1342)
.+.++..+. ++ ..++|+++...+
T Consensus 315 ~v~~g~~~~-~~----~~~~r~~i~~~~ 337 (357)
T 3lws_A 315 GFVGYLVDK-DG----YCSTEISVGDAY 337 (357)
T ss_dssp ESCSCCEEC-SS----EEEEEEEBCTTG
T ss_pred EEecccccC-CC----ceEEEEEecchh
Confidence 999875443 22 357898877644
No 125
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.80 E-value=1.5e-18 Score=206.10 Aligned_cols=239 Identities=20% Similarity=0.292 Sum_probs=172.8
Q ss_pred HHHhhccCCCC-ccccccchhhHHH---HHHHHHcCCCC-cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 379 VVLARKYRPSN-FNTLIGQNHISKS---LINALDKKRLH-HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 379 ~~l~~k~~p~~-f~~lvGq~~~~~~---L~~~l~~~~~~-~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
+.+..+++|.. |++++||+.+++. +.+.+..+..+ +++||+||||+|||++|+.+++.+.+..+. ....|
T Consensus 31 l~l~~~~~p~~~~~~ivG~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~-----~~~~~ 105 (368)
T 3uk6_A 31 LGLDDALEPRQASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPF-----TAIAG 105 (368)
T ss_dssp CCBCTTSCBCSEETTEESCHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCE-----EEEEG
T ss_pred cCcccccCcCcchhhccChHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCc-----ccccc
Confidence 34668899998 9999999999765 56677777654 789999999999999999999999753211 11112
Q ss_pred CCCcchh------------------------------hhc--cCCCccEEEE-ccCCCcCHHHHHHHHHHHhhc-CccCC
Q psy13354 454 GKCSVCV------------------------------KID--NGCFMDYIEM-DAASTRGINEMAQLLEQTIYA-PINAR 499 (1342)
Q Consensus 454 ~~~~~~~------------------------------~~~--~~~~~d~~~i-~~~~~~~~~~i~~ii~~~~~~-p~~~~ 499 (1342)
..+..+. .++ .....++..+ ..........+++.+..+... ...+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~ 185 (368)
T 3uk6_A 106 SEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGK 185 (368)
T ss_dssp GGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC
T ss_pred hhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhcc
Confidence 1110000 000 0000000000 000111134566666554432 11222
Q ss_pred ----ceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC------------CCCCChHHHhccEEEEEEcCCCHHHH
Q psy13354 500 ----YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT------------EPQKIPITVLSRCIQFNLKKMLHHDI 563 (1342)
Q Consensus 500 ----~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~------------~~~kl~~~L~sR~~~i~~~~l~~~el 563 (1342)
+.||+|||++.++.+.++.|++.+++++..++ +++++ .+..++++|.+||..+.|++++.+++
T Consensus 186 ~~~~~~vl~IDEi~~l~~~~~~~L~~~le~~~~~~~-ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~i~~~~~~~~e~ 264 (368)
T 3uk6_A 186 AEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPVL-IMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDT 264 (368)
T ss_dssp ---CBCEEEEESGGGSBHHHHHHHHHHTTCTTCCEE-EEEESCSEEECBTSSCEEETTCCHHHHTTEEEEEECCCCHHHH
T ss_pred ccccCceEEEhhccccChHHHHHHHHHhhCcCCCee-eeecccceeeeeccCCCCcccCCHHHHhhccEEEecCCCHHHH
Confidence 35999999999999999999999999877764 44444 25678899999999999999999999
Q ss_pred HHHHHHHHHhcCCCcchhHHHHHHHhcC-CcHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 564 VNNLCYILNKENIKFETSALNLIATGAQ-GSMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 564 ~~~l~~~~~~~g~~i~~~al~~La~~~~-g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
..++..++...+..+++++++.+++.+. ||+|.+.++++++..++ ...||.++|++++..
T Consensus 265 ~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 265 KQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp HHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 9999999999999999999999999998 99999999999987765 346999999998865
No 126
>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*
Probab=99.80 E-value=1.9e-18 Score=206.89 Aligned_cols=295 Identities=16% Similarity=0.135 Sum_probs=190.6
Q ss_pred cCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccC-CcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHH
Q psy13354 27 NNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG-GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAV 105 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~-~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~a 105 (1342)
.+.+.+..+.+.+++.+.+++.+.+.... |. ..+...++++ .+++++|.+++++++ ||++|+..+
T Consensus 22 ~~~~~l~~~~p~~~~~~~~a~~~~~~~~~---------~~~~~~~~~~l~~----~la~~~~~~~~i~~~-~gt~al~~~ 87 (391)
T 3dr4_A 22 SDLPRISVAAPRLDGNERDYVLECMDTTW---------ISSVGRFIVEFEK----AFADYCGVKHAIACN-NGTTALHLA 87 (391)
T ss_dssp ------CCCCCCCCSSHHHHHHHHHHHTC---------CSSCSHHHHHHHH----HHHHHHTCSEEEEES-SHHHHHHHH
T ss_pred CCCceeccCCCCCCHHHHHHHHHHHHcCC---------ccCCChHHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHH
Confidence 34456666777788889999888775321 22 3444455555 888899988666655 999999999
Q ss_pred HHHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCH
Q psy13354 106 FFSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183 (1342)
Q Consensus 106 l~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l 183 (1342)
+.++ +.+||+|+++...+++ ....+...|. +++.++.+ +++.+|++++++.+++ +++++++++ ..+...++
T Consensus 88 l~~~~~~~gd~vl~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~~~n-~tG~~~~~ 160 (391)
T 3dr4_A 88 LVAMGIGPGDEVIVPSLTYIA---SANSVTYCGA--TPVLVDNDPRTFNLDAAKLEALITP-RTKAIMPVH-LYGQICDM 160 (391)
T ss_dssp HHHHTCCTTCEEEEESSSCTH---HHHHHHHTTC--EEEEECBCTTTCSBCGGGSGGGCCT-TEEEECCBC-GGGCCCCH
T ss_pred HHHcCCCCcCEEEECCCchHH---HHHHHHHCCC--EEEEEecCccccCcCHHHHHHhcCC-CceEEEEEC-CCCChhhH
Confidence 9999 9999999987765554 4445566676 55555666 5688999999988865 445555422 22255699
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEec-hhHHHHhhccCCcc---
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMKK-KYKKIINSAVFPGI--- 257 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~~-~l~~~l~~~~~~~~--- 257 (1342)
++|+++|++||++||+|++|+.|....+.....+ .|++++||+ |+++++.||++++++ ++.+.+......+.
T Consensus 161 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~~~--~di~~~S~s~~K~l~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~ 238 (391)
T 3dr4_A 161 DPILEVARRHNLLVIEDAAEAVGATYRGKKSGSL--GDCATFSFFGNAIITTGEGGMITTNDDDLAAKMRLLRGQGMDPN 238 (391)
T ss_dssp HHHHHHHHHTTCEEEEECTTCTTCEETTEETTSS--SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHHBTTCCTT
T ss_pred HHHHHHHHHcCCEEEEECcccccceECCeeeccc--CCEEEEECCCCCcCCcCCeEEEEECCHHHHHHHHHHHhcCCCCC
Confidence 9999999999999999999998766443322222 367777755 999766678888876 46555543221110
Q ss_pred ---------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeC--C----CCCeEEEEEccC
Q psy13354 258 ---------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSG--G----TKSHIILVDLRN 322 (1342)
Q Consensus 258 ---------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~--~----~~~~~v~i~~~~ 322 (1342)
.+....+..+++..... ..+++..++..++++++.+.|.+.|+.+... + ...+++++.+++
T Consensus 239 ~~~~~~~~g~~~~~~~l~aa~~~~~~----~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~i~~~~ 314 (391)
T 3dr4_A 239 RRYWFPIVGFNYRMTNIQAAIGLAQL----ERVDEHLAARERVVGWYEQKLARLGNRVTKPHVALTGRHVFWMYTVRLGE 314 (391)
T ss_dssp STTCCSSCCCBCBCCHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHHGGGTTSEECCCCCTTSCCCCSSEEEEECS
T ss_pred CcccccccccccCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhhcCCccccCcCCCCCCcceeEEEEEEECC
Confidence 01222333333333222 2556677888899999999999888776543 1 122345666654
Q ss_pred C-CCCHHHHHHHHHHCCceeeeccCCC
Q psy13354 323 K-KITGKIAESILESANIICNKNSIPN 348 (1342)
Q Consensus 323 ~-~~~~~~~~~ll~~~GI~v~~~~~p~ 348 (1342)
. +.+.+.+...|.++||.+.++..|.
T Consensus 315 ~~~~~~~~l~~~L~~~GI~v~~~~~p~ 341 (391)
T 3dr4_A 315 GLSTTRDQVIKDLDALGIESRPVFHPM 341 (391)
T ss_dssp SCSSCHHHHHHHHHHTTCCCEECCCCG
T ss_pred ccchhHHHHHHHHHHCCCceeecCCcc
Confidence 1 2234444444555699999876543
No 127
>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*
Probab=99.80 E-value=2.4e-18 Score=206.77 Aligned_cols=309 Identities=12% Similarity=0.073 Sum_probs=195.6
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHH--hC-CC-CceEecCCHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKI--FN-AE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~--~g-~~-~~vi~~~sGs~A 101 (1342)
+.+.+..+.+. .+|.+.+++.+.+.. .... .....|+...+..++++ .++++ .| .+ +.+++++|++++
T Consensus 34 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~-~~~~~y~~~~g~~~lr~----~la~~l~~g~~~~~~v~~~~G~~~a 107 (400)
T 3asa_A 34 TVINLSIGDTTQPLNASVAEAFASSIAR-LSSP-TTCRGYGPDFGLPALRQ----KLSEDFYRGFVDAKEIFISDGAKVD 107 (400)
T ss_dssp CCEECSSCCCCCCCCHHHHHHHHHHHHH-HTSS-SCCCCCCCTTCCHHHHH----HHHHTTSTTSSCGGGEEEESCHHHH
T ss_pred ceEeccCCCCCCCCCHHHHHHHHHHHhc-cccc-ccccCCCCCCCCHHHHH----HHHHHHHcCCCCHHHEEEccChHHH
Confidence 55777777643 456689998887753 2111 11122333344556666 66666 46 43 556666688889
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCce-eEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW-FNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~-~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
+..++ .++.+||+|++..+.+++ ....+...|.. +..+ +.++ .+..|++. . .+++++++++++||
T Consensus 108 l~~~~-~~~~~gd~Vl~~~p~y~~---~~~~~~~~g~~~~~~~--~~~~~~~~~~~l~~---~---~~~~~v~l~~p~np 175 (400)
T 3asa_A 108 LFRLL-SFFGPNQTVAIQDPSYPA---YLDIARLTGAKEIIAL--PCLQENAFFPEFPE---D---THIDILCLCSPNNP 175 (400)
T ss_dssp HHHHH-HHHCSSCEEEEEESCCHH---HHHHHHHTTCSEEEEE--ECCGGGTTCCCCCT---T---CCCSEEEEESSCTT
T ss_pred HHHHH-HHcCCCCEEEECCCCcHH---HHHHHHHcCCcceEec--ccchhcCcccChhh---c---cCccEEEEeCCCCC
Confidence 98865 456899999987755544 34445566764 4444 4443 23334322 1 34667666666666
Q ss_pred -c-cc---CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC--CCC---CcEEEecCCccCCCCCe---eEEEEechh
Q psy13354 179 -Q-YI---DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--VPF---ADFITSTTHKSLRGPRG---GFILMKKKY 245 (1342)
Q Consensus 179 -~-~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~--l~~---~Divv~S~sK~l~gp~G---G~iv~~~~l 245 (1342)
+ .. ++++|+++|+++|++||+||+|......+...... ++. .+++++|+||++ |+.| ||+++++++
T Consensus 176 tG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-g~~GlriG~~~~~~~~ 254 (400)
T 3asa_A 176 TGTVLNKDQLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPL-GFAGIRLGWTVIPQEL 254 (400)
T ss_dssp TCCCCCHHHHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGG-TTTTCCCEEEECCTTC
T ss_pred CCCcCCHHHHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhc-CCcchheeEEeeChhh
Confidence 2 22 47889999999999999999998433322111111 111 248899999999 6556 999999887
Q ss_pred -------HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEE
Q psy13354 246 -------KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILV 318 (1342)
Q Consensus 246 -------~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i 318 (1342)
++.+........+++++.+.+.++..++... +.++.++++.++++++.+.|.+.|+++.. +..++++|+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~---~~~~~~~~~~~~~~~l~~~L~~~g~~~~~-~~~~~~~~~ 330 (400)
T 3asa_A 255 TYADGHFVIQDWERFLSTTFNGASIPAQEAGVAGLSIL---PQLEAIHYYRENSDLLRKALLATGFEVFG-GEHAPYLWV 330 (400)
T ss_dssp BCTTSCBHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHT---TTCHHHHHHHHHHHHHHHHHHHTTCEEEE-CSSSSEEEE
T ss_pred ccchhhhHHHHHHHHhccCccCCChHHHHHHHHHhCcH---HHHHHHHHHHHHHHHHHHHHHHCCCeeeC-CCCceEEEE
Confidence 5555432222223345566666655555442 45567888999999999999998888754 345788999
Q ss_pred E-ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccc
Q psy13354 319 D-LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363 (1342)
Q Consensus 319 ~-~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~ 363 (1342)
. ++....+.+++..+++++||.+.++..+... ..+++|+++
T Consensus 331 ~~~~~~~~~~~~~~~l~~~~gv~v~~g~~f~~~----~~~~iRis~ 372 (400)
T 3asa_A 331 KPTQANISDRDLFDFFLREYHIAITPGIGFGRS----GSGFVRFSS 372 (400)
T ss_dssp ECCCTTCCTTTHHHHHHHHHSEECEEGGGGCGG----GTTCEEEEC
T ss_pred eccCCCCCHHHHHHHHHHhCCEEEeChhHhCCC----CCCEEEEEe
Confidence 9 7643334467788887779999987544321 135799984
No 128
>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*
Probab=99.80 E-value=5e-18 Score=210.22 Aligned_cols=293 Identities=17% Similarity=0.116 Sum_probs=195.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccC--------------CCCEEEEeeccCCccc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLN--------------PGDTIMGMSLQEGGHL 127 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~--------------pGD~Vlv~~~~~~~~~ 127 (1342)
|...+...++|+++.+++++++|.+ ...++++|||+|+..++.++.. +++.|+++.. .|.
T Consensus 127 ~~~~p~~~~le~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~---~H~ 203 (511)
T 3vp6_A 127 YEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQ---SHY 203 (511)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETT---SCT
T ss_pred cccCchHHHHHHHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCC---chH
Confidence 4567788899999999999999987 3556666999999999887754 5678886664 455
Q ss_pred hhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHhcC-----CeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEE
Q psy13354 128 THGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKKNK-----PKLIIAGASAYS--QYIDFERFYHIAKNINSYFMV 199 (1342)
Q Consensus 128 s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~~~-----~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIv 199 (1342)
+....+...|.+. +++.++.++++.+|+++|++++.+.. +++++++.++++ ...|+++|+++|++||+|+++
T Consensus 204 s~~~~~~~~g~g~~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~l~~I~~ia~~~~~~lhv 283 (511)
T 3vp6_A 204 SIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHV 283 (511)
T ss_dssp HHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHcCCCCCcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCcccccHHHHHHHHHHcCCEEEE
Confidence 5666667777633 45555777789999999999997642 566666554444 556999999999999999999
Q ss_pred EcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhccCCccccC--------------
Q psy13354 200 DMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSAVFPGIQGG-------------- 260 (1342)
Q Consensus 200 Dea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~~~~~~~~~-------------- 260 (1342)
|++|+.+.+....+...+ ..+|++++++|||+++|.| |+++.++ .+..........+....
T Consensus 284 D~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~ 363 (511)
T 3vp6_A 284 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKA 363 (511)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGGS
T ss_pred EccchhhHhhChhhhhhccCCccCCEEEECcccccCCCcCeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCCC
Confidence 999998776443222222 2469999999999988877 7777765 45554432222222110
Q ss_pred ---CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-CCCCeEEEEEccCCCC----------
Q psy13354 261 ---PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-GTKSHIILVDLRNKKI---------- 325 (1342)
Q Consensus 261 ---~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-~~~~~~v~i~~~~~~~---------- 325 (1342)
+......++..++..+..++++++.++..++++++.+.|++. |+++..+ ++...++.+.+.+...
T Consensus 364 ~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~~~~~~ 443 (511)
T 3vp6_A 364 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRR 443 (511)
T ss_dssp SCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHH
T ss_pred CCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhHH
Confidence 000123344445555555688889999999999999999986 8988762 2334444444432211
Q ss_pred ------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 326 ------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 326 ------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.++...++++ |+.+... .|. ..+ .+++|++++..
T Consensus 444 ~~l~~~~~~l~~~L~~~-G~~~~~~-~~~-~~~---~~~lRi~~~~~ 484 (511)
T 3vp6_A 444 EKLHKVAPKIKALMMES-GTTMVGY-QPQ-GDK---ANFFRMVISNP 484 (511)
T ss_dssp HHHHHHHHHHHHHHHHH-TSCEEEE-EEE-TTE---EEEEEECCCCT
T ss_pred HHHHHHHHHHHHHHHhc-CCEEEEE-EEe-CCc---eEEEEEEecCC
Confidence 12456666666 6544331 111 111 24699999433
No 129
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*
Probab=99.80 E-value=7.4e-18 Score=202.14 Aligned_cols=288 Identities=12% Similarity=0.061 Sum_probs=185.4
Q ss_pred CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCC
Q psy13354 36 ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGD 114 (1342)
Q Consensus 36 ~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD 114 (1342)
...+++.+++++.+.+.+.| .. ..++...+ +++.+++++|.+.+++++ ||++|+..++.++ +.+||
T Consensus 7 ~p~~~~~v~~a~~~~~~~~~----~~----~~g~~~~~----l~~~la~~~~~~~v~~~~-ggt~al~~~~~~l~~~~gd 73 (394)
T 1o69_A 7 PPHMGGNELKYIEEVFKSNY----IA----PLGEFVNR----FEQSVKDYSKSENALALN-SATAALHLALRVAGVKQDD 73 (394)
T ss_dssp -----CCHHHHHHHHHHHTT----TS----CTTHHHHH----HHHHHHHHHCCSEEEEES-CHHHHHHHHHHHTTCCTTC
T ss_pred CCCCCHHHHHHHHHHHHcCC----cc----CCChHHHH----HHHHHHHHhCCCcEEEeC-CHHHHHHHHHHHcCCCCCC
Confidence 34566678888888875322 11 01222344 445888889986655555 9999999999999 99999
Q ss_pred EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCCcccCHHHHHHHHHH
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYSQYIDFERFYHIAKN 192 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~~~~~l~~I~~la~~ 192 (1342)
+|+++.+.++++. ..+...|. +++.++.+++|.+|++++++.+++. ++++|++++ ..+...++++|.++|++
T Consensus 74 ~Vl~~~~~~~~~~---~~~~~~g~--~~~~v~~~~~~~~d~~~l~~~i~~~~~~~~~v~~~~-~~G~~~~l~~i~~l~~~ 147 (394)
T 1o69_A 74 IVLASSFTFIASV---APICYLKA--KPVFIDCDETYNIDVDLLKLAIKECEKKPKALILTH-LYGNAAKMDEIVEICKE 147 (394)
T ss_dssp EEEEESSSCGGGT---HHHHHTTC--EEEEECBCTTSSBCHHHHHHHHHHCSSCCCEEEEEC-GGGCCCCHHHHHHHHHH
T ss_pred EEEECCCccHHHH---HHHHHcCC--EEEEEEeCCCCCcCHHHHHHHHhcccCCceEEEEEC-CCCChhhHHHHHHHHHH
Confidence 9998886666554 34455666 5555566677889999999999863 456666654 33466799999999999
Q ss_pred cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCeeEEEEe-chhHHHHhhccCCccccCC----------
Q psy13354 193 INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKYKKIINSAVFPGIQGGP---------- 261 (1342)
Q Consensus 193 ~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~GG~iv~~-~~l~~~l~~~~~~~~~~~~---------- 261 (1342)
+|++||+|++|+.|....+.....+..+|+.++|.+|+++++.+|+++++ +++++.+......+....+
T Consensus 148 ~~~~li~Dea~~~g~~~~~~~~~~~~~~~~~s~s~~K~l~~~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~ 227 (394)
T 1o69_A 148 NDIVLIEDAAEALGSFYKNKALGTFGEFGVYSYNGNKIITTSGGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYN 227 (394)
T ss_dssp TTCEEEEECTTCTTCEETTEETTSSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCB
T ss_pred cCCEEEEECcCcccceeCCcccccccCcEEEEEeCCccCCCCCceEEEECCHHHHHHHHHHHHhccccCccccccccCcc
Confidence 99999999999876543332222223357777788999955555999995 6877777653222211100
Q ss_pred --cHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCC----CCeEEEEEccCC------------
Q psy13354 262 --LMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGT----KSHIILVDLRNK------------ 323 (1342)
Q Consensus 262 --~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~----~~~~v~i~~~~~------------ 323 (1342)
..+..++++.+ . + +.+++..+++.++++++.+.|.+. +++..... ..+++++.++..
T Consensus 228 ~~~~~~~aa~~l~--~-l-~~l~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 302 (394)
T 1o69_A 228 YRLSNVLGAIGVA--Q-M-EVLEQRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDIN 302 (394)
T ss_dssp CBCCHHHHHHHHH--H-H-TTHHHHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEE
T ss_pred cCcCHHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhcccccccccc
Confidence 12223332222 2 2 256667889999999999999887 65533211 122567776532
Q ss_pred --------CCCHHHHHHHHHHCCceeeeccCC
Q psy13354 324 --------KITGKIAESILESANIICNKNSIP 347 (1342)
Q Consensus 324 --------~~~~~~~~~ll~~~GI~v~~~~~p 347 (1342)
+.+.+.+...|.++||.+++++.|
T Consensus 303 ~~~~~~~~~~~~~~l~~~L~~~gI~v~~~~~~ 334 (394)
T 1o69_A 303 ISQKNITLHPKISKLIEDLKNKQIETRPLWKA 334 (394)
T ss_dssp CCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCC
T ss_pred ccccccccccCHHHHHHHHHHcCCcccccCCc
Confidence 112344444555679999877544
No 130
>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*
Probab=99.80 E-value=3.5e-18 Score=204.54 Aligned_cols=288 Identities=14% Similarity=0.149 Sum_probs=192.6
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a 108 (1342)
.|++.. ..+++.+++++.+.+.+.. +...+...++++ .+++++|.+++++++ ||++|+..++.+
T Consensus 10 ~i~~~~--p~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~----~la~~~~~~~~~~~~-~gt~al~~~~~~ 73 (393)
T 1mdo_A 10 FLPFSR--PAMGAEELAAVKTVLDSGW---------ITTGPKNQELEA----AFCRLTGNQYAVAVS-SATAGMHIALMA 73 (393)
T ss_dssp CBCSCC--CCCCHHHHHHHHHHHHHTC---------CSSSHHHHHHHH----HHHHHHCCSEEEEES-CHHHHHHHHHHH
T ss_pred ccccCC--CCCCHHHHHHHHHHHhcCC---------cCCChHHHHHHH----HHHHHhCCCcEEEec-ChHHHHHHHHHH
Confidence 455544 4477888899888775321 122344445555 888899988665555 999999999999
Q ss_pred c-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHH
Q psy13354 109 V-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186 (1342)
Q Consensus 109 l-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I 186 (1342)
+ +.+||+|+++...+++ ....+...|. +++.++.++ ++.+|++++++.+++ +++++++++ ..+...++++|
T Consensus 74 ~~~~~gd~Vl~~~~~~~~---~~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~l~~-~~~~v~~~~-~~G~~~~~~~i 146 (393)
T 1mdo_A 74 LGIGEGDEVITPSMTWVS---TLNMIVLLGA--NPVMVDVDRDTLMVTPEHIEAAITP-QTKAIIPVH-YAGAPADLDAI 146 (393)
T ss_dssp TTCCTTCEEEEESSSCHH---HHHHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHHHH
T ss_pred cCCCCCCEEEeCCCccHh---HHHHHHHCCC--EEEEEeccCCcCCCCHHHHHHhcCC-CceEEEEeC-CCCCcCCHHHH
Confidence 9 9999999987755544 4445566777 455556554 477999999998875 456666643 23355689999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEe-chhHHHHhhccCCc-------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMK-KKYKKIINSAVFPG------- 256 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~-~~l~~~l~~~~~~~------- 256 (1342)
.++|+++|++||+|++|+.|....+..... .|++++|+| |+++++.||+++++ +++++.+.......
T Consensus 147 ~~l~~~~~~~li~D~a~~~g~~~~~~~~~~---~d~~~~S~~k~K~l~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~ 223 (393)
T 1mdo_A 147 YALGERYGIPVIEDAAHATGTSYKGRHIGA---RGTAIFSFHAIKNITCAEGGIVVTDNPQFADKLRSLKFHGLGVDAWD 223 (393)
T ss_dssp HHHHHHHTCCBCEECTTCTTCEETTEETTS---SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTEECC---
T ss_pred HHHHHHcCCeEEEECccccCCeECCeecCC---CCeEEEeCCCCCccccccceEEEeCCHHHHHHHHHHHhcCCcccchh
Confidence 999999999999999998765433221111 699999999 99976677999997 67777765432211
Q ss_pred --------cc-----c--CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCC-----CCCeEE
Q psy13354 257 --------IQ-----G--GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG-----TKSHII 316 (1342)
Q Consensus 257 --------~~-----~--~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~-----~~~~~v 316 (1342)
.+ + ....+..++++....+ .+++..++..++++++.+.|.+.++++...+ ...+++
T Consensus 224 ~~~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~ 299 (393)
T 1mdo_A 224 RQSGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQ----KLDALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLF 299 (393)
T ss_dssp --------CCEESSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCE
T ss_pred hhcccccccccccccCccCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCcccccCCCCCCCceeEEE
Confidence 10 1 1123333333333222 4556677788899999999998877664222 344678
Q ss_pred EEEccC---CCCCHHHHHHHHHHCCceeeeccCC
Q psy13354 317 LVDLRN---KKITGKIAESILESANIICNKNSIP 347 (1342)
Q Consensus 317 ~i~~~~---~~~~~~~~~~ll~~~GI~v~~~~~p 347 (1342)
|+.++. .....++...+. ++||.+.++..|
T Consensus 300 ~v~~~~~~~~~~~~~l~~~l~-~~gi~v~~~~~~ 332 (393)
T 1mdo_A 300 IIRVDEARCGITRDALMASLK-TKGIGTGLHFRA 332 (393)
T ss_dssp EEECCHHHHSSCHHHHHHHHH-HTTBCCBCCCCC
T ss_pred EEEecccccccCHHHHHHHHH-hCCCCcccccCc
Confidence 888863 222334555554 569999876544
No 131
>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}
Probab=99.79 E-value=9e-18 Score=207.57 Aligned_cols=318 Identities=12% Similarity=0.085 Sum_probs=212.1
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC----Cce--EecCCHHHHHHHHHHHcc
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE----AAN--VQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~----~~v--i~~~sGs~A~~~al~al~ 110 (1342)
.+.+|.+.+++.+.+...+ . .+...+...++++.+++++++++|.+ ... ++++||++|+..++.++.
T Consensus 66 ~~~~~~v~~~l~~~~~~~~----~---~~~~~p~~~~le~~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~ 138 (502)
T 3hbx_A 66 TWMEPECDKLIMSSINKNY----V---DMDEYPVTTELQNRCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFK 138 (502)
T ss_dssp CCCCHHHHHHHHHTTTCBT----T---CTTTCHHHHHHHHHHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhccCC----C---ChhcChhHHHHHHHHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHH
Confidence 4567778888777664221 1 12334557799999999999999987 222 235599999999988886
Q ss_pred CC--------CC-----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC-CCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 111 NP--------GD-----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 111 ~p--------GD-----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~-~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
.+ |+ +|+++. +.|.+....+...|+.+..+ +.+++ +.+|++++++++.+. +++|+++.++
T Consensus 139 ~~~~~~~~~~G~~~~~~~vi~~~---~~h~s~~~~~~~~G~~~~~v--~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~ 212 (502)
T 3hbx_A 139 RKWQNKRKAEGKPVDKPNIVTGA---NVQVCWEKFARYFEVELKEV--KLSEGYYVMDPQQAVDMVDEN-TICVAAILGS 212 (502)
T ss_dssp HHHHHHHHHTTCCCSCCEEEEET---TCCHHHHHHHHHTTCEEEEE--CCBTTBCSCCHHHHHHHCCTT-EEEEEEEBSC
T ss_pred HHHhHHHHhcCCCCCCcEEEEcC---CchHHHHHHHHHcCceeEEE--ecCCCcCcCCHHHHHHHHhhC-CEEEEEecCC
Confidence 55 76 888665 45566666677788855554 55544 899999999998764 4555554444
Q ss_pred CC--cccCHHHHHHHHHHc------CCEEEEEcccchhhh--hcCCCCCC--CCCCcEEEecCCccCCCCCe-eEEEEec
Q psy13354 177 YS--QYIDFERFYHIAKNI------NSYFMVDMAHYAGLI--AAGEYPNP--VPFADFITSTTHKSLRGPRG-GFILMKK 243 (1342)
Q Consensus 177 ~~--~~~~l~~I~~la~~~------gi~LIvDea~~~g~~--~~~~~~~~--l~~~Divv~S~sK~l~gp~G-G~iv~~~ 243 (1342)
++ ...|+++|.++|+++ |+||++|+||+.+.. ........ ...+|++++++||++.+|.| |+++.++
T Consensus 213 n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~g~G~~~~~~ 292 (502)
T 3hbx_A 213 TLNGEFEDVKLLNDLLVEKNKETGWDTPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYAGIGWVIWRN 292 (502)
T ss_dssp TTTCCBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESS
T ss_pred CCCCcccCHHHHHHHHHHhhhccCCCCeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCCCeEEEEEeC
Confidence 44 555999999999999 999999999985542 11111111 23579999999999978877 8777764
Q ss_pred -hhHHHHhhccCCccc---------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCCCC
Q psy13354 244 -KYKKIINSAVFPGIQ---------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGGTK 312 (1342)
Q Consensus 244 -~l~~~l~~~~~~~~~---------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~~~ 312 (1342)
+...........+.. ++.......++.+++.....+++..+.++..++++++.+.|.+.+ +++..+.+.
T Consensus 293 ~~~l~~~~~~~~~yl~~~~~~~~~~~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 372 (502)
T 3hbx_A 293 KEDLPEELIFHINYLGADQPTFTLNFSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTERFNIVSKDEG 372 (502)
T ss_dssp GGGSCGGGCEEECSSSSCEEECCSCCSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCEEECSCSSS
T ss_pred HHHhhHHhccCcccccCCCCCccccCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCEEEEeCCCC
Confidence 332111111111111 111122344455555544445778889999999999999999986 888653246
Q ss_pred CeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 313 SHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 313 ~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.+++.+.+++. ..+...+...|.++||.+.....|....+ ...+|++++..++.+
T Consensus 373 ~~~v~f~~~~~~~~~~~~l~~~L~~~Gi~v~~~~~p~~~~~---~~~lRisv~~~~t~e 428 (502)
T 3hbx_A 373 VPLVAFSLKDSSCHTEFEISDMLRRYGWIVPAYTMPPNAQH---ITVLRVVIREDFSRT 428 (502)
T ss_dssp SSEEEEEESSCSSCCHHHHHHHHHTTTCBCCEEECCTTCTT---CEEEEEECCTTCCHH
T ss_pred ceEEEEEecCCCcCCHHHHHHHHHhCCcEEeeccCCcccCC---ceEEEEEeCCCCCHH
Confidence 77888888653 23443444455566999977665554332 457999999877653
No 132
>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*
Probab=99.79 E-value=6.4e-18 Score=207.67 Aligned_cols=287 Identities=12% Similarity=0.107 Sum_probs=193.3
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc----cCCCC-----EEEEeeccCCccchhhHHhhhCCc
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV----LNPGD-----TIMGMSLQEGGHLTHGMMLNMSGK 138 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al----~~pGD-----~Vlv~~~~~~~~~s~~~~~~~~g~ 138 (1342)
..+..++++++++++++++|.+..++++++|++|+..++.++ ..+|| +|+++...|+. ....+...|.
T Consensus 102 ~~g~~~l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~~~~Gd~~~r~~Vlv~~~~h~~---~~~~~~~~G~ 178 (474)
T 1wyu_B 102 AQGALRLMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYHEDRGEGRTRRVVLVPDSAHGS---NPATASMAGY 178 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHHHHTTCTTTCCEEEEETTSCTH---HHHHHHHTTC
T ss_pred ChHHHHHHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHHHhcCCccCCCEEEEeCCcChh---hHHHHHHCCC
Confidence 566778889999999999999877767779999999876665 35887 99987755544 3444566677
Q ss_pred eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCc-c-cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCC
Q psy13354 139 WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQ-Y-IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP 216 (1342)
Q Consensus 139 ~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~-~-~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~ 216 (1342)
+++.++.+++|.+|+++++++++++ +++|+++++|+.+ . .++++|+++|++||++||+|++|+.+..+. ..+
T Consensus 179 --~vv~v~~~~~~~~d~~~L~~~i~~~-t~~v~~~~pn~~G~~~~~l~~i~~l~~~~g~~li~Dea~~~~~~g~---~~~ 252 (474)
T 1wyu_B 179 --QVREIPSGPEGEVDLEALKRELGPH-VAALMLTNPNTLGLFERRILEISRLCKEAGVQLYYDGANLNAIMGW---ARP 252 (474)
T ss_dssp --EEEEECBCTTSSBCHHHHHHHCSTT-EEEEEECSSCTTSCCCTTHHHHHHHHHHHTCEEEEEGGGGGGTTTT---CCH
T ss_pred --EEEEecCCCCCCcCHHHHHHhhCCC-ceEEEEECCCCCcccCCCHHHHHHHHHHcCCEEEEeCchhhhhccC---CCc
Confidence 5555677778999999999998754 5666666666554 4 489999999999999999999997665421 111
Q ss_pred CC-CCcEEEecCCccCCCCC-----e-eEEEEechhHHHHhhcc------------------CCccccCCcHHHHHHHHH
Q psy13354 217 VP-FADFITSTTHKSLRGPR-----G-GFILMKKKYKKIINSAV------------------FPGIQGGPLMHVIAAKAV 271 (1342)
Q Consensus 217 l~-~~Divv~S~sK~l~gp~-----G-G~iv~~~~l~~~l~~~~------------------~~~~~~~~~~~~~~Aaa~ 271 (1342)
.. .+|++++|+||+|++|. | |++++++++++.+.... .....++.+...+.++..
T Consensus 253 ~~~g~di~~~s~~K~~~~p~g~gG~~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~ 332 (474)
T 1wyu_B 253 GDMGFDVVHLNLHKTFTVPHGGGGPGSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGNFLALVRAWA 332 (474)
T ss_dssp HHHTCSEEECCTTTTTCCCCTTSCCCCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSCHHHHHHHHH
T ss_pred ccCCCcEEEEeCccccccCCCCCCCCeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccCcCcHHHHHHHHH
Confidence 11 36999999999996653 3 99999998876654100 000111223333333333
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCC
Q psy13354 272 AFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPE 351 (1342)
Q Consensus 272 al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~ 351 (1342)
.+.....+++++..+++.++++++.+.|.+.|+++..++...+.+++.++......++...++++ ||.+....+|..
T Consensus 333 ~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-Gi~~~~~~~~~~-- 409 (474)
T 1wyu_B 333 YIRTLGLEGLKKAAALAVLNARYLKELLKEKGYRVPYDGPSMHEFVAQPPEGFRALDLAKGLLEL-GFHPPTVYFPLI-- 409 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCBCSSCSSCCSCEEEBCSTTCCHHHHHHHHHHT-TCCCCEESCSTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcEecCCCCcceEEEEEcCCCCCHHHHHHHHHHC-Cccccccccccc--
Confidence 33333344677778999999999999999888776332222222556663222344566666655 998644333321
Q ss_pred Cccccccccccccccccc
Q psy13354 352 KPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 352 ~~~~~~~lRi~~~~~~t~ 369 (1342)
..+.+|++++..++.
T Consensus 410 ---~~~~lRis~~~~~t~ 424 (474)
T 1wyu_B 410 ---VKEALMVEPTETEAK 424 (474)
T ss_dssp ---STTCEEECCCTTSCH
T ss_pred ---cCCEEEEEeecCCCH
Confidence 135699999876553
No 133
>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*
Probab=99.79 E-value=1.9e-18 Score=205.31 Aligned_cols=304 Identities=16% Similarity=0.138 Sum_probs=194.7
Q ss_pred cCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc---cC
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV---LN 111 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al---~~ 111 (1342)
+...+++.+++++.+.+...+ +...+... .+++.+++++|.+++ ++++||++|+..++.++ ++
T Consensus 7 ~~~~~~~~v~~a~~~~~~~~~---------~~~~~~~~----~l~~~la~~~~~~~v-~~~~ggt~al~~~~~~~~~~~~ 72 (375)
T 2fnu_A 7 SEPCLDKEDKKAVLEVLNSKQ---------LTQGKRSL----LFEEALCEFLGVKHA-LVFNSATSALLTLYRNFSEFSA 72 (375)
T ss_dssp CCCCCCHHHHHHHHHHHTSSC---------CSSSHHHH----HHHHHHHHHHTCSEE-EEESCHHHHHHHHHHHSSCCCT
T ss_pred CCCCCCHHHHHHHHHHHHcCc---------ccCChHHH----HHHHHHHHHhCCCeE-EEeCCHHHHHHHHHHHhcccCC
Confidence 457788999999888874211 11123333 455589999998855 44559999999999999 89
Q ss_pred CCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHH
Q psy13354 112 PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAK 191 (1342)
Q Consensus 112 pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~ 191 (1342)
+||+|+++...|++ ....+...|. +++.++.++++.+|++++++.+++ ++++++++++ .+...++++|.++|+
T Consensus 73 ~gd~Vl~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~~-tG~~~~l~~i~~l~~ 145 (375)
T 2fnu_A 73 DRNEIITTPISFVA---TANMLLESGY--TPVFAGIKNDGNIDELALEKLINE-RTKAIVSVDY-AGKSVEVESVQKLCK 145 (375)
T ss_dssp TSCEEEECSSSCTH---HHHHHHHTTC--EEEECCBCTTSSBCGGGSGGGCCT-TEEEEEEECG-GGCCCCHHHHHHHHH
T ss_pred CCCEEEECCCccHh---HHHHHHHCCC--EEEEeccCCCCCCCHHHHHhhcCc-CceEEEEeCC-cCCccCHHHHHHHHH
Confidence 99999977755544 3444455666 556667766668899999988865 4455555444 556669999999999
Q ss_pred HcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCe-eEEEE-e-chhHHHHhhccCCcc---------
Q psy13354 192 NINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRG-GFILM-K-KKYKKIINSAVFPGI--------- 257 (1342)
Q Consensus 192 ~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~G-G~iv~-~-~~l~~~l~~~~~~~~--------- 257 (1342)
+||++||+|++|+.|....+...... .|+++.|+| |++ ++ | |++++ + +++++.+........
T Consensus 146 ~~~~~li~D~a~~~~~~~~~~~~~~~--~~i~~~s~s~~K~~-~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (375)
T 2fnu_A 146 KHSLSFLSDSSHALGSEYQNKKVGGF--ALASVFSFHAIKPI-TT-AEGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGE 221 (375)
T ss_dssp HHTCEEEEECTTCTTCEETTEETTSS--SSEEEEECCTTSSS-CC-SSCEEEEESCHHHHHHHHHHTBTTEEESSSSCEE
T ss_pred HcCCEEEEECccccCCeECCeecccc--CCeEEEeCCCCCCc-cc-cCceEEEeCCHHHHHHHHHHHhcCCccccccccc
Confidence 99999999999987755322111111 367777776 999 66 5 66665 4 567776654322111
Q ss_pred ---cc--CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC----CCCeEEEEEccCCC--C
Q psy13354 258 ---QG--GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG----TKSHIILVDLRNKK--I 325 (1342)
Q Consensus 258 ---~~--~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~----~~~~~v~i~~~~~~--~ 325 (1342)
.+ ....+..+++... . . +++++..+++.++++++.+.|.+. |+.+..++ ...+++++.++... .
T Consensus 222 ~~~~~~~~~~~~~~~a~~~~--~-~-~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (375)
T 2fnu_A 222 VKSIGHNFRLNEIQSALGLS--Q-L-KKAPFLMQKREEAALTYDRIFKDNPYFTPLHPLLKDKSSNHLYPILMHQKFFTC 297 (375)
T ss_dssp ESSCCCBCCCCHHHHHHHHH--H-H-TTHHHHHHHHHHHHHHHHHHHTTCSSEEESGGGCSSCCCCSCEEEEECGGGGGG
T ss_pred cccccccCCCCHHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHhhcCCCccccCCCCCCCcceEEEEEEeCccccch
Confidence 11 1123333333222 2 2 366778889999999999999986 77765431 12345577765432 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcc---------------cccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPY---------------FTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~---------------~~~~lRi~~~~~~t 368 (1342)
..++...+ .++||.+...+.|......+ ..+.+|++++..++
T Consensus 298 ~~~l~~~L-~~~gi~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t 354 (375)
T 2fnu_A 298 KKLILESL-HKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLN 354 (375)
T ss_dssp HHHHHHHH-HHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCC
T ss_pred HHHHHHHH-HHCCCCccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCC
Confidence 33455555 56699998543333210011 12568998887655
No 134
>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*
Probab=99.79 E-value=1.6e-18 Score=209.85 Aligned_cols=323 Identities=13% Similarity=0.068 Sum_probs=201.2
Q ss_pred ccccccccchH-HHHHHHHHHHh-ccCceeeeecC----CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHH
Q psy13354 4 KNENLSKIDPK-IWEIILKEKQR-QNNNIELIASE----NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLI 74 (1342)
Q Consensus 4 ~~~~~~~~~~~-~~~~~~~~~~~-~~~~i~l~a~~----n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~L 74 (1342)
..+++...++. +.......... ..+.|++..+. +. .++.+.+++.+.+..... ..|....+..++
T Consensus 24 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~G~y~d~~~~~~~~~~v~~a~~~~~~~~~~------~~Y~~~~g~~~l 97 (420)
T 4f4e_A 24 LFSAVELAPRDPILGLNEAFNADTRPTKVNLGVGVYTNEDGKIPLLRAVRDAEKARVEAGLP------RGYLPIDGIAAY 97 (420)
T ss_dssp TTTTCCCCCCCHHHHHHHHHHHCCCSSCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTCCC------CCCCCTTCCHHH
T ss_pred HhhcCCcCCCChHHHHHHHHHhcCCCCcEEeeeeeeECCCCCccCcHHHHHHHHHHhccCCC------CCCCCCCCcHHH
Confidence 34455655543 34443332222 23568888772 22 225699998887753111 223344455688
Q ss_pred HHHHHHHHHHHhC---CCC--ceEecCCHHHHHHHH--HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC
Q psy13354 75 EKIAINRLKKIFN---AEA--ANVQPHSGSQANQAV--FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL 147 (1342)
Q Consensus 75 e~~~~~~la~~~g---~~~--~vi~~~sGs~A~~~a--l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~ 147 (1342)
++++++++....+ .++ .+++++||++|+..+ +.+++.|||+|+++.+.+ ..+...+...|..+..+++..
T Consensus 98 r~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~~~~gd~Vlv~~p~~---~~~~~~~~~~g~~~~~v~~~~ 174 (420)
T 4f4e_A 98 DASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRTLNPKAKVAISDPSW---ENHRALFDMAGFEVVAYPYYD 174 (420)
T ss_dssp HHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHCTTCCEEEEESCC---HHHHHHHHHTTCCEEEEECEE
T ss_pred HHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHHhCCCCEEEEeCCCc---HhHHHHHHHcCCeEEEeeeec
Confidence 8877777655444 233 566665899999999 456689999999877544 444555566777555554322
Q ss_pred CCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC-CCCC---
Q psy13354 148 NKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-YPNP--- 216 (1342)
Q Consensus 148 ~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-~~~~--- 216 (1342)
++++.+|++.+++.+++. +.+++++++++|| + ..++++|+++|++||+++|+|++|..+.+.... ..+.
T Consensus 175 ~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 254 (420)
T 4f4e_A 175 AKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDLNDAQWAQVVEVVKARRLVPFLDIAYQGFGESIEADAAAVRLF 254 (420)
T ss_dssp TTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCTTGGGHHHHHH
T ss_pred cccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCcEEEEccccccccCCcchhhHHHHHH
Confidence 456889999999999743 3467777666666 2 235889999999999999999998654432100 0000
Q ss_pred --CCCCcEEEecCCccCCCCCe---eEEEE---echhHHH----HhhccCCccccCCcHHHHHHHHHHHHHh-----ccc
Q psy13354 217 --VPFADFITSTTHKSLRGPRG---GFILM---KKKYKKI----INSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKP 279 (1342)
Q Consensus 217 --l~~~Divv~S~sK~l~gp~G---G~iv~---~~~l~~~----l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~ 279 (1342)
....+++++|+||++ |+.| ||+++ ++++++. +...... .+++++...+.+++.++... ..+
T Consensus 255 ~~~~~~~i~~~S~SK~~-~~~G~RiG~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~ 332 (420)
T 4f4e_A 255 AAANLNVFVSSSFSKSF-SLYGERVGALSIITDSKDEAARVLSQLKRVIRT-NYSNPPTHGGAIVAAVLASPELRASWVQ 332 (420)
T ss_dssp HHTTCCEEEEEECTTTT-TCGGGCEEEEEEECSSHHHHHHHHHHHHHHHHT-TTSSCCSHHHHHHHHHHHCHHHHHHHHH
T ss_pred HhcCCCEEEEEeCCccC-cCcCCCcEEEEEEcCCHHHHHHHHHHHHHHHhc-ccCCCCHHHHHHHHHHhcCHHHHHHHHH
Confidence 112368899999999 7777 99864 3444433 2221111 22223333444443333221 123
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 280 DFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 280 ~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+++++++++.++++++.+.|.+. |+.+.. +..++++|+.+ +.+.+..+++++||.+.+
T Consensus 333 ~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~-~~~g~~~~~~~-----~~~~~~~~l~~~gI~v~~ 394 (420)
T 4f4e_A 333 ELGEMRDRIRAMRNGLVERLKAAGIERDFSFIN-AQRGMFSYSGL-----TSAQVDRLREEFGIYAVS 394 (420)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCSSCCTHHH-HSCSSEEECCC-----CHHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCceeEC-CCccEEEEeCC-----CHHHHHHHHHhCCEEecC
Confidence 56788899999999999999986 555433 35567788655 346677788778999974
No 135
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=99.79 E-value=7.2e-19 Score=208.78 Aligned_cols=284 Identities=18% Similarity=0.140 Sum_probs=185.9
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-c
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-L 110 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~ 110 (1342)
+..+.+.+++.+.+++.+.+... .+...+...++++ .+++++|.+++++++ |||+|+..++.++ +
T Consensus 7 ~~~~~~~~~~~v~~a~~~~~~~~---------~~~~~~~~~~l~~----~la~~~~~~~~~~~~-sGt~al~~al~~~~~ 72 (367)
T 3nyt_A 7 LKNQQARIKDKIDAGIQRVLRHG---------QYILGPEVTELED----RLADFVGAKYCISCA-NGTDALQIVQMALGV 72 (367)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHC---------CCSSCHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHTTC
T ss_pred ccccccccCHHHHHHHHHHHhcC---------CccCChHHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHHhCC
Confidence 33334455666777777766421 1233444455555 889999988665555 9999999999999 8
Q ss_pred CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHH
Q psy13354 111 NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHI 189 (1342)
Q Consensus 111 ~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~l 189 (1342)
++||+|+++...+++ ....+...|. +++.++.++ ++.+|++++++++++ ++++|+.+ +.++...++++|.++
T Consensus 73 ~~gd~Vi~~~~~~~~---~~~~~~~~G~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~-~~~G~~~~~~~i~~l 145 (367)
T 3nyt_A 73 GPGDEVITPGFTYVA---TAETVALLGA--KPVYVDIDPRTYNLDPQLLEAAITP-RTKAIIPV-SLYGQCADFDAINAI 145 (367)
T ss_dssp CTTCEEEEESSSCTH---HHHHHHHTTC--EEEEECBCTTTCSBCGGGTGGGCCT-TEEEECCB-CGGGCCCCHHHHHHH
T ss_pred CCcCEEEECCCccHH---HHHHHHHcCC--EEEEEecCCccCCcCHHHHHHhcCc-CCcEEEee-CCccChhhHHHHHHH
Confidence 999999987765544 4445566676 555566664 488999999998864 45555532 222356699999999
Q ss_pred HHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecC--CccCCC-CCeeEEEEe-chhHHHHhhccCCc---------
Q psy13354 190 AKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTT--HKSLRG-PRGGFILMK-KKYKKIINSAVFPG--------- 256 (1342)
Q Consensus 190 a~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~--sK~l~g-p~GG~iv~~-~~l~~~l~~~~~~~--------- 256 (1342)
|++||++||+|++|+.|....+.....+. |++++|| +|++++ +.||+++++ +++.+.++......
T Consensus 146 a~~~~~~li~D~a~~~g~~~~~~~~~~~~--di~~~Sf~~~K~l~~~g~gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~ 223 (367)
T 3nyt_A 146 ASKYGIPVIEDAAQSFGASYKGKRSCNLS--TVACTSFFPSAPLGCYGDGGAIFTNDDELATAIRQIARHGQDRRYHHIR 223 (367)
T ss_dssp HHHTTCCBEEECTTTTTCEETTEETTSSS--SEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTEECS
T ss_pred HHHcCCEEEEECccccCCeECCeeccCCC--CEEEEECCCCCcCCCcCceeEEEeCCHHHHHHHHHHHhcCCCcCceeec
Confidence 99999999999999887664443333333 8999997 899954 346998885 56766665532221
Q ss_pred -cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC----CeEEEEEccCCCCCHHHHH
Q psy13354 257 -IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK----SHIILVDLRNKKITGKIAE 331 (1342)
Q Consensus 257 -~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~----~~~v~i~~~~~~~~~~~~~ 331 (1342)
.++...++..+++..+..+ .++...++..++++++.+.|.+.++.+...+.. .+.+++.++ +.+.+.
T Consensus 224 ~g~~~~~~~~~aa~~~~~l~----~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~ 295 (367)
T 3nyt_A 224 VGVNSRLDTLQAAILLPKLE----IFEEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD----NRESVQ 295 (367)
T ss_dssp CCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS----SHHHHH
T ss_pred cCcCCCccHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC----CHHHHH
Confidence 1123334455554444433 345567778888999999999887654322211 123444443 344455
Q ss_pred HHHHHCCceeeeccC
Q psy13354 332 SILESANIICNKNSI 346 (1342)
Q Consensus 332 ~ll~~~GI~v~~~~~ 346 (1342)
..|+++||.+.+.+.
T Consensus 296 ~~L~~~GI~~~~~~~ 310 (367)
T 3nyt_A 296 ASLKAAGVPTAVHYP 310 (367)
T ss_dssp HHHHHHTCCCBCSCS
T ss_pred HHHHHCCCceeccCC
Confidence 555556999987653
No 136
>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}
Probab=99.79 E-value=1.6e-18 Score=210.25 Aligned_cols=315 Identities=10% Similarity=0.056 Sum_probs=204.8
Q ss_pred cCceeeeecCC-CCc--HHH--HHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-CCC-Cc---eEecC
Q psy13354 27 NNNIELIASEN-YTS--LAV--MEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-NAE-AA---NVQPH 96 (1342)
Q Consensus 27 ~~~i~l~a~~n-~l~--~~v--~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g~~-~~---vi~~~ 96 (1342)
.+.+.+..+.+ .++ |.+ .+++.+.+.... ...|+...+..++++++++++.+.. +.+ +. +++++
T Consensus 47 ~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~------~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~ 120 (430)
T 2x5f_A 47 STTYNATIGMATNKDGKMFASSLDAMFNDLTPDE------IFPYAPPQGIEELRDLWQQKMLRDNPELSIDNMSRPIVTN 120 (430)
T ss_dssp TCSEECCCSSCEETTEECCCHHHHTTBSSCCGGG------TSSCCCTTCCHHHHHHHHHHHHHHCTTCCGGGBCCCEEES
T ss_pred CCcEEeeeeeccCCCCchhhHHHHHHHHhcCccc------ccccCCCCCCHHHHHHHHHHHhccCcccCCCccceEEEcC
Confidence 45677877766 332 324 666555442101 1123333345677775555554432 544 34 66665
Q ss_pred CHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhh-CCceeEEEEecCCC-CCCCCHHHHHHHHHhc--CCeEEEE
Q psy13354 97 SGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNM-SGKWFNSICYGLNK-KEKIDYKKVEYLAKKN--KPKLIIA 172 (1342)
Q Consensus 97 sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~-~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~--~~~liv~ 172 (1342)
||++|+..++.++++|||+|++..+.+++ ....+.. .|. +++.++.++ ++.+|++++++.+++. +++++++
T Consensus 121 g~~~al~~~~~~l~~~gd~Vl~~~p~y~~---~~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i 195 (430)
T 2x5f_A 121 ALTHGLSLVGDLFVNQDDTILLPEHNWGN---YKLVFNTRNGA--NLQTYPIFDKDGHYTTDSLVEALQSYNKDKVIMIL 195 (430)
T ss_dssp HHHHHHHHHHHHHCCTTCEEEEESSCCTH---HHHHHTTTTCC--EEEEECCBCTTSCBCSHHHHHHHHHCCSSEEEEEE
T ss_pred CchHHHHHHHHHHhCCCCEEEEcCCcCcc---HHHHHHHhcCC--eEEEEeccCccCCcCHHHHHHHHHhcCCCCEEEEE
Confidence 88999999999999999999987755544 4444555 666 455555543 4678999999999863 4566666
Q ss_pred cCCCCC--cccC---HHHHHHHHHH-----cCCEEEEEcccchhhhhcCCCCCCC------CCC---cEEEecCCccCCC
Q psy13354 173 GASAYS--QYID---FERFYHIAKN-----INSYFMVDMAHYAGLIAAGEYPNPV------PFA---DFITSTTHKSLRG 233 (1342)
Q Consensus 173 ~~s~~~--~~~~---l~~I~~la~~-----~gi~LIvDea~~~g~~~~~~~~~~l------~~~---Divv~S~sK~l~g 233 (1342)
+.++|| ...+ +++|+++|++ ||++||+|++|+.+.+....+.+.. ... +++++|+||++ |
T Consensus 196 ~~p~nptG~~~~~~~l~~i~~~~~~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~ 274 (430)
T 2x5f_A 196 NYPNNPTGYTPTHKEVTTIVEAIKALANKGTKVIAVVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEF-F 274 (430)
T ss_dssp CSSCTTTCCCCCHHHHHHHHHHHHHHHHTTCEEEEEEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHT-T
T ss_pred cCCCCCCCCcCCHHHHHHHHHHHHhhhhccCCEEEEEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCC-C
Confidence 666666 2234 8999999999 9999999999986544322122211 123 57799999999 6
Q ss_pred CCe---eEEEE---echhHHHHhhccCC---ccccCCcHHHHHHHHHHHH-Hh-ccchHHHHHHHHHHHHHHHHHHHH--
Q psy13354 234 PRG---GFILM---KKKYKKIINSAVFP---GIQGGPLMHVIAAKAVAFK-EV-LKPDFKIYQKQVVKNAKILSKILD-- 300 (1342)
Q Consensus 234 p~G---G~iv~---~~~l~~~l~~~~~~---~~~~~~~~~~~~Aaa~al~-~~-l~~~~~~~~~~l~~~a~~l~~~L~-- 300 (1342)
+.| ||+++ ++++++.+...... ....+++.+.+.++..++. .. ..+.++..++++.++++++.+.|.
T Consensus 275 ~~G~riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 354 (430)
T 2x5f_A 275 AWGFRVGFMTFGTSDQTTKEVLEAKVKGLIRSNISSGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYAD 354 (430)
T ss_dssp CGGGCCEEEEEBCCCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCG
T ss_pred CCCCCeEEEEEecCCHHHHHHHHHHHhhhhhcccCCCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 556 99999 88888877653222 0122344555555554444 21 111344478889999999999998
Q ss_pred --hCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 301 --QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 301 --~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+.|+.+.. +.+++++|+.++ ...+.++...+++++||.+.++ . .+++|++++.
T Consensus 355 ~~~~g~~~~~-~~~g~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g-------~---~~~iRis~~~ 409 (430)
T 2x5f_A 355 QYHSHWQAYD-FNSGYFMAIKVH-DVDPEALRKHLIDKYSIGVIAL-------N---ATDIRIAFSC 409 (430)
T ss_dssp GGTTTEEECC-CCBSSEEEEEES-SSCHHHHHHHHHHHHCEECEEC-------S---SSEEEEEGGG
T ss_pred CCCCCceeeC-CCceEEEEeCCC-CCCHHHHHHHHHHhCCEEEecC-------C---CCeEEEEEec
Confidence 66777643 455678999987 3334567777776469999875 1 3569999985
No 137
>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*
Probab=99.79 E-value=1.2e-17 Score=197.94 Aligned_cols=302 Identities=11% Similarity=0.040 Sum_probs=196.0
Q ss_pred cCceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
++.+.+..+.+. .++.+.+++.+.+.. ..+|+. .+..++++ .+++++|.+ +.+++++||++|+.
T Consensus 24 ~~~idl~~~~~~~~~~~~v~~a~~~~~~~--~~~y~~-------~~~~~l~~----~la~~~~~~~~~v~~~~g~~~al~ 90 (364)
T 1lc5_A 24 DQLLDFSANINPLGMPVSVKRALIDNLDC--IERYPD-------ADYFHLHQ----ALARHHQVPASWILAGNGETESIF 90 (364)
T ss_dssp GGSEECSSCCCTTCCCHHHHHHHHHTGGG--GGSCCC-------TTCHHHHH----HHHHHHTSCGGGEEEESSHHHHHH
T ss_pred cceEEeccccCCCCCCHHHHHHHHHHHHH--hhcCCC-------CCHHHHHH----HHHHHHCcCHHHEEECCCHHHHHH
Confidence 356788777654 456688888777642 112221 12345555 788888876 56677769999999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK--KEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~--~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
.++.++ +||+|++..+.+++ ....+...|.. ++.++.+. ++.+ ++++.+.+.+ ++++++++.+++| .
T Consensus 91 ~~~~~~--~gd~vl~~~p~y~~---~~~~~~~~g~~--~~~v~~~~~~~~~~-l~~~~~~~~~-~~~~v~i~~p~nptG~ 161 (364)
T 1lc5_A 91 TVASGL--KPRRAMIVTPGFAE---YGRALAQSGCE--IRRWSLREADGWQL-TDAILEALTP-DLDCLFLCTPNNPTGL 161 (364)
T ss_dssp HHHHHH--CCSEEEEEESCCTH---HHHHHHHTTCE--EEEEECCGGGTTCC-CTTHHHHCCT-TCCEEEEESSCTTTCC
T ss_pred HHHHHc--CCCeEEEeCCCcHH---HHHHHHHcCCe--EEEEeCCcccccch-hHHHHHhccC-CCCEEEEeCCCCCCCC
Confidence 999988 78999987755544 44445566764 44445543 3332 4545544433 4566665555555 3
Q ss_pred ccC---HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEE-EechhHHHHh
Q psy13354 180 YID---FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFIL-MKKKYKKIIN 250 (1342)
Q Consensus 180 ~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv-~~~~l~~~l~ 250 (1342)
..+ +++|+++|++||++||+||+|+.+.+.........+ ..+++++|+||++ |+.| ||++ +++++++.+.
T Consensus 162 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~~~~~l~ 240 (364)
T 1lc5_A 162 LPERPLLQAIADRCKSLNINLILDEAFIDFIPHETGFIPALKDNPHIWVLRSLTKFY-AIPGLRLGYLVNSDDAAMARMR 240 (364)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTGGGSTTCCCSGGGCTTCTTEEEEEESTTTT-TCTTTCCEEEECCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHhhhcCcEEEEECcChhhccCccchhhHhccCCCEEEEEECchhh-cCCccceEEEEECCHHHHHHHH
Confidence 334 999999999999999999999865442111111111 2478899999999 5445 9999 8999988887
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
.....+ +++...+.++..++. . ..++++.++++.++++++.+.|.+. |+.+. +..++++|+.++.. ..++
T Consensus 241 ~~~~~~---~~~~~~~~~~~~~l~-~-~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~--~~~g~~~~~~~~~~--~~~l 311 (364)
T 1lc5_A 241 RQQMPW---SVNALAALAGEVALQ-D-SAWQQATWHWLREEGARFYQALCQLPLLTVY--PGRANYLLLRCERE--DIDL 311 (364)
T ss_dssp HHSCTT---CSCHHHHHHHHHGGG-C-HHHHHHHHHHHHHHHHHHHHHHHTSTTEEEC--CCSSSEEEEEESCT--TCCH
T ss_pred HhCCCC---CCCHHHHHHHHHHHh-C-cHHHHHHHHHHHHHHHHHHHHHhcCCCCEEC--CCCCeEEEEECCCc--HHHH
Confidence 654332 233444444443332 2 2367778888999999999999886 77764 34567788887642 3356
Q ss_pred HHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
...+++ +||.+.++..+... ..+++|++++.
T Consensus 312 ~~~l~~-~gi~v~~g~~~~~~----~~~~iRis~~~ 342 (364)
T 1lc5_A 312 QRRLLT-QRILIRSCANYPGL----DSRYYRVAIRS 342 (364)
T ss_dssp HHHHHT-TTEECEECTTSTTC----CTTEEEEECCC
T ss_pred HHHHHH-CCcEEeeCcccCCC----CCCEEEEEeCC
Confidence 666664 59999987544321 13579999763
No 138
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.79 E-value=3.2e-18 Score=200.83 Aligned_cols=209 Identities=26% Similarity=0.305 Sum_probs=171.0
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHc----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDK----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..|..+|+|.+|++++|++.+++.+...+.. +...+.+||+||+|||||++|+.+++.+.+
T Consensus 17 ~~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~--------------- 81 (338)
T 3pfi_A 17 ETYETSLRPSNFDGYIGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSA--------------- 81 (338)
T ss_dssp ------CCCCSGGGCCSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTC---------------
T ss_pred hhhhhccCCCCHHHhCChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCC---------------
Confidence 3688999999999999999999999888864 445556899999999999999999998863
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-------
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP------- 527 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~------- 527 (1342)
.++.++++.......+...+.. .+...+++|||++.++.+.++.|++.+++..
T Consensus 82 --------------~~~~~~~~~~~~~~~~~~~~~~------~~~~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~~~ 141 (338)
T 3pfi_A 82 --------------NIKTTAAPMIEKSGDLAAILTN------LSEGDILFIDEIHRLSPAIEEVLYPAMEDYRLDIIIGS 141 (338)
T ss_dssp --------------CEEEEEGGGCCSHHHHHHHHHT------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCC------
T ss_pred --------------CeEEecchhccchhHHHHHHHh------ccCCCEEEEechhhcCHHHHHHHHHHHHhccchhhccc
Confidence 3566666554555556555543 2456799999999999999999999998642
Q ss_pred -----------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHH
Q psy13354 528 -----------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMR 595 (1342)
Q Consensus 528 -----------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr 595 (1342)
+.+++|++||....+.++|.+|+ ..+.|.+++.+++..++...+...+..+++++++.+++.++|++|
T Consensus 142 ~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~~r 221 (338)
T 3pfi_A 142 GPAAQTIKIDLPKFTLIGATTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRSTPR 221 (338)
T ss_dssp ---CCCCCCCCCCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTCHH
T ss_pred CccccceecCCCCeEEEEeCCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHH
Confidence 13788999999989999999999 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 596 DALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 596 ~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.+.++.+..++ ...|+.+++..++.
T Consensus 222 ~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 252 (338)
T 3pfi_A 222 IALRLLKRVRDFADVNDEEIITEKRANEALN 252 (338)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhcCCccCHHHHHHHHH
Confidence 9999999976554 34488888876653
No 139
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1
Probab=99.79 E-value=4.1e-18 Score=200.71 Aligned_cols=306 Identities=15% Similarity=0.145 Sum_probs=196.7
Q ss_pred CceeeeecCC-CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 28 NNIELIASEN-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 28 ~~i~l~a~~n-~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
..|.+.++.. ..+|.+++++.+... ++ ...|+.. .+.+++++++++++|.+..+++++||++|+..++
T Consensus 8 ~~id~~~~~~~~~~~~v~~a~~~~~~-----~~--~~~~~~~----~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al 76 (356)
T 1v72_A 8 PALGFSSDNIAGASPEVAQALVKHSS-----GQ--AGPYGTD----ELTAQVKRKFCEIFERDVEVFLVPTGTAANALCL 76 (356)
T ss_dssp CCCBCSCGGGCCCCHHHHHHHHHTTS-----SC--CCSTTCS----HHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHH
T ss_pred ceEeeccCCccCCCHHHHHHHHhhcc-----Cc--ccccccc----hHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHH
Confidence 3455555433 345668888776642 11 1123222 3455566699999995444566669999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhC--CceeEEEEecCCCCCCCCHHHHHH-HHHhc------CCeEEEEcCCCC
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMS--GKWFNSICYGLNKKEKIDYKKVEY-LAKKN------KPKLIIAGASAY 177 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~--g~~~~~v~~~~~~~~~id~e~Le~-~i~~~------~~~liv~~~s~~ 177 (1342)
.+++.|||+|++....|+...... .+... |. +++.++.+ ++.+|++++++ ++++. ++++|+++++++
T Consensus 77 ~~~~~~gd~vi~~~~~~~~~~~~~-~~~~~~~g~--~~~~v~~~-~~~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~~ 152 (356)
T 1v72_A 77 SAMTPPWGNIYCHPASHINNDECG-APEFFSNGA--KLMTVDGP-AAKLDIVRLRERTREKVGDVHTTQPACVSITQATE 152 (356)
T ss_dssp HTSCCTTEEEEECTTSHHHHSSTT-HHHHHTTSC--EEEECCCG-GGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCT
T ss_pred HHhcCCCCEEEEcCccchhhhhch-HHHHHhCCc--EEEEecCC-CCeEcHHHHHHHhhhcchhhccCCceEEEEEcCCC
Confidence 999999999997664443322110 13333 65 55555654 57899999999 88752 456777766554
Q ss_pred Cc----ccCHHHHHHHHHHcCCEEEEEcccchhhh-hcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEechhHHH
Q psy13354 178 SQ----YIDFERFYHIAKNINSYFMVDMAHYAGLI-AAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKKKYKKI 248 (1342)
Q Consensus 178 ~~----~~~l~~I~~la~~~gi~LIvDea~~~g~~-~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~ 248 (1342)
++ ..++++|+++|++||++||+|++|..+.. ..+.....+ ..+|+++.|+||+ ++|.| |++++++++++.
T Consensus 153 tG~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~-g~~~G~g~~~~~~~~~~~ 231 (356)
T 1v72_A 153 VGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKN-GVLAAEAIVLFNTSLATE 231 (356)
T ss_dssp TSCCCCHHHHHHHHHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGG-TCSSCEEEEESSGGGHHH
T ss_pred CCccCCHHHHHHHHHHHHHcCCeEEEEchhhHhHhccCCCCHHHhhhhhcCCEEEEecccC-CCcCccEEEEECHHHHhh
Confidence 42 34799999999999999999999975432 122222222 2468899999999 47888 799889888877
Q ss_pred HhhccC-CccccCCcHHHHHHHHHHHHHhcc-chHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCC
Q psy13354 249 INSAVF-PGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKI 325 (1342)
Q Consensus 249 l~~~~~-~~~~~~~~~~~~~Aaa~al~~~l~-~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~ 325 (1342)
+..... ....... ...++.. ..+.+. ..+.+..+++.++++++.+.|.+. |+++.. +..++++|+.++
T Consensus 232 ~~~~~~~~~~~~~~---~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~-~~~~~~~~~~~~---- 302 (356)
T 1v72_A 232 MSYRRKRAGHLSSK---MRFLSAQ-IDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLG-GTEANILFCRLD---- 302 (356)
T ss_dssp HHHHHHHTTCCCSS---THHHHHH-HHHHTSTTHHHHHHHHHHHHHHHHHHHHTTCTTEEEES-CCCSSEEEEEEC----
T ss_pred HHHHhhccCchhhh---HHHHHHH-HHHHHHhhhHHHHHHHHHHHHHHHHHHHhhCCCcEEcc-CCCccEEEEEcC----
Confidence 654211 1111111 1122221 222222 235556778889999999999884 887754 456788888875
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.++...+. ++||.+.++.+. .+.+|++++..++
T Consensus 303 -~~~~~~l~-~~gi~v~~g~~~--------~~~iRi~~~~~~~ 335 (356)
T 1v72_A 303 -SAMIDALL-KAGFGFYHDRWG--------PNVVRFVTSFATT 335 (356)
T ss_dssp -HHHHHHHH-HTTCBCBCSSSS--------TTEEEEECCTTCC
T ss_pred -HHHHHHHH-hcCeEEeccccC--------CCeEEEEecCCCC
Confidence 25666665 559999865421 3569999776544
No 140
>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*
Probab=99.79 E-value=1.5e-17 Score=203.26 Aligned_cols=314 Identities=11% Similarity=0.044 Sum_probs=207.8
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCC------ceEecCCHHHHHHHHHHHcc
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEA------ANVQPHSGSQANQAVFFSVL 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~------~vi~~~sGs~A~~~al~al~ 110 (1342)
.+.++.+.+++.+++.. .. ..+...+...++++++++++++++|.+. .+++++|||+|+..++.++.
T Consensus 52 ~~~~~~v~e~~~~a~~~-~~------~~~~~~~~~~~l~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~ 124 (452)
T 2dgk_A 52 TWDDENVHKLMDLSINK-NW------IDKEEYPQSAAIDLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMK 124 (452)
T ss_dssp CCCCHHHHHHHHHTTTC-BT------TCTTTCHHHHHHHHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-CC------CChhhChhHHHHHHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHH
Confidence 35666788887766531 11 1123346777899999999999999873 25666699999999998875
Q ss_pred C--------CC-----CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 111 N--------PG-----DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 111 ~--------pG-----D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
. +| ++|+++. .|.+....+...|+ +++.++.++ +|.+|++++++++++. +++|+++.++
T Consensus 125 ~~~~~~~~~~G~~~~~~~vi~~~----~h~~~~~~~~~~G~--~v~~v~~~~~~~~~d~~~l~~~i~~~-t~~v~~~~~~ 197 (452)
T 2dgk_A 125 WRWRKRMEAAGKPTDKPNLVCGP----VQICWHKFARYWDV--ELREIPMRPGQLFMDPKRMIEACDEN-TIGVVPTFGV 197 (452)
T ss_dssp HHHHHHHHHTTCCCSCCEEEESS----CCHHHHHHHHHTTC--EEEECCCBTTBCSCCHHHHHHHCCTT-EEEEECBBSC
T ss_pred HHHHHHHHhcCCCCCCcEEEECC----CcHHHHHHHHHcCc--eEEEEecCCCCCeECHHHHHHHHhhC-CEEEEEEcCC
Confidence 3 55 5888655 45555666677787 555556665 7999999999998764 5666665555
Q ss_pred CC--cccCHHHHHHHHHHc------CCEEEEEcccchhhh--hcCCCCCC--CCCCcEEEecCCccCCCCCe-eEEEEec
Q psy13354 177 YS--QYIDFERFYHIAKNI------NSYFMVDMAHYAGLI--AAGEYPNP--VPFADFITSTTHKSLRGPRG-GFILMKK 243 (1342)
Q Consensus 177 ~~--~~~~l~~I~~la~~~------gi~LIvDea~~~g~~--~~~~~~~~--l~~~Divv~S~sK~l~gp~G-G~iv~~~ 243 (1342)
++ ...|+++|+++|++| |+|+++|++|+.+.. ........ ...+|++++++||++.+|.| |++++++
T Consensus 198 n~tG~~~~l~~I~~ia~~~~~~~~~~~~l~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~~~G~~~~~~ 277 (452)
T 2dgk_A 198 TYTGNYEFPQPLHDALDKFQADTGIDIDMHIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPLGCGWVIWRD 277 (452)
T ss_dssp TTTCBBCCHHHHHHHHHHHHHHHCCCCCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCSSCEEEEESS
T ss_pred cCCcccCCHHHHHHHHHHHhhccCCCCcEEEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCCCeEEEEEcC
Confidence 44 555999999999996 999999999987643 11211111 33579999999999867766 9999975
Q ss_pred h-hH-HHHhhccCCcc---------ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEEeeCC-
Q psy13354 244 K-YK-KIINSAVFPGI---------QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRIVSGG- 310 (1342)
Q Consensus 244 ~-l~-~~l~~~~~~~~---------~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~~~~~- 310 (1342)
. +. +.+.. ...+. .++.......++.+++.....+++++..++..++++++.+.|.+.+ +++..+.
T Consensus 278 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~ 356 (452)
T 2dgk_A 278 EEALPQELVF-NVDYLGGQIGTFAINFSRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKLGPYEFICTGR 356 (452)
T ss_dssp GGGSCGGGCE-EECCTTCCEEECCSCCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEEEEEECC
T ss_pred HHHHHHHhcc-CccccCCCCCCcccCCCChhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCeEEecCCC
Confidence 3 32 33321 11111 1111121333334444444445778889999999999999999974 8876532
Q ss_pred --CCCeEEEEEccCCC---CC-HHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 311 --TKSHIILVDLRNKK---IT-GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 311 --~~~~~v~i~~~~~~---~~-~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
...+++.+.+++.. .+ .++...|. +.||.+.....|....+ ...+|++++..+|.
T Consensus 357 ~~~~~~~v~f~~~~~~~~~~~~~~l~~~L~-~~Gi~v~~~~~~~~~~~---~~~lRis~~~~~t~ 417 (452)
T 2dgk_A 357 PDEGIPAVCFKLKDGEDPGYTLYDLSERLR-LRGWQVPAFTLGGEATD---IVVMRIMCRRGFEM 417 (452)
T ss_dssp TTTBSSEEEEEECTTCCCSCCHHHHHHHHH-HTTCBCCEEECSTTCTT---CEEEEEECCTTCCH
T ss_pred CCCCeEEEEEEecCcccccCCHHHHHHHHH-hcCCeeeeeeCCcccCC---eEEEEEEecCCCCH
Confidence 34567777776431 23 45555555 45998765444433221 35799999987763
No 141
>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}
Probab=99.79 E-value=4.3e-19 Score=220.95 Aligned_cols=317 Identities=13% Similarity=0.052 Sum_probs=206.2
Q ss_pred eeeeecCCC-CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC------CCceEecCCHHHHH
Q psy13354 30 IELIASENY-TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA------EAANVQPHSGSQAN 102 (1342)
Q Consensus 30 i~l~a~~n~-l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~------~~~vi~~~sGs~A~ 102 (1342)
+.+..+... .++.+++++.+.+.. . .++....+..++++++++.+.+..+. ++.+++++||++|+
T Consensus 106 i~l~~g~~~~~~~~~v~a~~~~~~~---~-----~y~~~~~g~~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al 177 (533)
T 3f6t_A 106 VNYCHTELGLNRDKVVAEWVNGAVA---N-----NYPVPDRCLVNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAI 177 (533)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHT---C-----SCCSSSSCCHHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHH
T ss_pred eeccCCCCCcCCcHHHHHHHHHHHh---C-----CCCCCcccHHHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHH
Confidence 445555433 345577776666642 1 22223445568888888888766333 23455555889999
Q ss_pred HHHHHH-----ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--CCCCCCCHHHHHHHHHhcCCeEEEEcCC
Q psy13354 103 QAVFFS-----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--NKKEKIDYKKVEYLAKKNKPKLIIAGAS 175 (1342)
Q Consensus 103 ~~al~a-----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~~~~~id~e~Le~~i~~~~~~liv~~~s 175 (1342)
..++.+ ++++||+|++..+.|++ ........|..+..++++. ++++.+|++++++++.+ ++++++++.+
T Consensus 178 ~~~~~~l~~~~l~~~gd~Viv~~p~~~~---~~~~~~~~g~~~~~v~~~~~~~~~~~~d~~~l~~~l~~-~~k~v~l~~p 253 (533)
T 3f6t_A 178 VYAFHSLAENHLLKKGDKIAINEPIFTP---YLRIPELKDYELVEVDLHSYEKNDWEIEPNEIEKLKDP-SIKALIVVNP 253 (533)
T ss_dssp HHHHHHHHHTTSSCTTCEEEEESSCCHH---HHTSGGGGGSEEEEECCCEETTTTSEECHHHHHHHSCT-TEEEEEEESS
T ss_pred HHHHHHhhhhhccCCcCEEEEcCCCcHH---HHHHHHHcCCeEEEEEecCCcccCCCCCHHHHHHHhCC-CCeEEEEeCC
Confidence 999998 78999999987755543 3444455666555555443 45688999999998865 4566665555
Q ss_pred CCC-c-cc---CHHHHHHHHH-HcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe---eEEEEech--
Q psy13354 176 AYS-Q-YI---DFERFYHIAK-NINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG---GFILMKKK-- 244 (1342)
Q Consensus 176 ~~~-~-~~---~l~~I~~la~-~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~~~~-- 244 (1342)
+|| + .. ++++|+++|+ +||++||+|++|+................+++++|+||.+ |+.| ||++++++
T Consensus 254 ~NPtG~~~~~~~l~~l~~la~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~~~~~~ 332 (533)
T 3f6t_A 254 TNPTSKEFDTNALNAIKQAVEKNPKLMIISDEVYGAFVPNFKSIYSVVPYNTMLVYSYSKLF-GCTGWRLGVIALNEKNV 332 (533)
T ss_dssp CTTTCBCCCHHHHHHHHHHHHHCTTCEEEEECTTGGGSTTCCCHHHHSGGGEEEEEESHHHH-TCGGGCEEEEEEESSCH
T ss_pred CCCCccccCHHHHHHHHHHHHhCCCCEEEEcCCccccccCccCHhhcCCCCEEEEecCcccC-CCcccceEEEEECcHHH
Confidence 555 2 22 4668899999 6899999999997433211000000112358999999999 7777 99999886
Q ss_pred ---hHHHHh-------------------------------hccCCccccCCcHHHHHHHH----HHHH-----HhccchH
Q psy13354 245 ---YKKIIN-------------------------------SAVFPGIQGGPLMHVIAAKA----VAFK-----EVLKPDF 281 (1342)
Q Consensus 245 ---l~~~l~-------------------------------~~~~~~~~~~~~~~~~~Aaa----~al~-----~~l~~~~ 281 (1342)
+++.+. .....+...+++.+.+.+++ .++. .....+.
T Consensus 333 ~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~ 412 (533)
T 3f6t_A 333 FDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFIDRLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYI 412 (533)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHHHHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHH
T ss_pred HHHHHHhcchhhHHHHHhhhhccccCcchhhhHHHHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHH
Confidence 433220 11233344455566666643 2222 1233467
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCC----------------CCCHHHHHHHHHHCCceeeecc
Q psy13354 282 KIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNK----------------KITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 282 ~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~----------------~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
++.++++.++++++.+.|. .++.+. .+.+++++|++++.. ..+.+++..+++++||.+.++.
T Consensus 413 ~~~~~~~~~r~~~l~~~L~-~~~~~~-~~~~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~ 490 (533)
T 3f6t_A 413 DIARKLVSERYDQLHDAMQ-APKDET-DTNTHYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGV 490 (533)
T ss_dssp HHHHHHHHHHHHHHHHHHT-CCCCCS-TTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTE
T ss_pred HHHHHHHHHHHHHHHHhcC-CCcccc-CCCceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCc
Confidence 7888999999999999997 776542 356678899988631 2345788888888899999876
Q ss_pred CCCCCCCcccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
.+..+ .+++|++++..
T Consensus 491 ~f~~~-----~~~iRls~a~~ 506 (533)
T 3f6t_A 491 GFGAK-----PGELRVSQANL 506 (533)
T ss_dssp EECSS-----TTEEEEESSSS
T ss_pred ccCCC-----CCEEEEEEeeC
Confidence 65543 35799998653
No 142
>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}
Probab=99.78 E-value=9.6e-19 Score=208.09 Aligned_cols=278 Identities=15% Similarity=0.095 Sum_probs=179.0
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCE
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDT 115 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~ 115 (1342)
..+++.+++++.+.+.... |...+...++++ .+++++|.+++++++ |||+|+..++.++ +++||+
T Consensus 13 ~~~~~~~~~a~~~~~~~~~---------~~~~~~~~~l~~----~la~~~~~~~~i~~~-sgt~al~~~l~~l~~~~gd~ 78 (373)
T 3frk_A 13 DEIEYEIKFKFEEIYKRNW---------FILGDEDKKFEQ----EFADYCNVNYCIGCG-NGLDALHLILKGYDIGFGDE 78 (373)
T ss_dssp HHHHHHHHHHHHHHHHHTC---------CSSSHHHHHHHH----HHHHHHTSSEEEEES-CHHHHHHHHHHHTTCCTTCE
T ss_pred CCCCHHHHHHHHHHHHCCC---------ccCCchHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHcCCCCcCE
Confidence 3445557777777664311 233444455555 889999988665555 9999999999999 999999
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHHHcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNIN 194 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~~~g 194 (1342)
|+++...+++ ....+...|. +++.++.+ +++.+|++++++++++ ++++++.++ ..+...++++|.++|++||
T Consensus 79 Vi~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~l~~-~~~~v~~~n-~~G~~~~l~~i~~l~~~~~ 151 (373)
T 3frk_A 79 VIVPSNTFIA---TALAVSYTGA--KPIFVEPDIRTYNIDPSLIESAITE-KTKAIIAVH-LYGQPADMDEIKRIAKKYN 151 (373)
T ss_dssp EEEETTSCTH---HHHHHHHHSC--EEEEECEETTTTEECGGGTGGGCCT-TEEEEEEEC-CTTCCCCHHHHHHHHHHHT
T ss_pred EEECCCCcHH---HHHHHHHcCC--EEEEEeccccccCcCHHHHHHhcCC-CCeEEEEEC-CCcCcccHHHHHHHHHHcC
Confidence 9987765554 4444566676 44555555 5688999999998876 455555422 2335669999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCC-CCeeEEEEec-hhHHHHhhccCCcc----------ccC
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRG-PRGGFILMKK-KYKKIINSAVFPGI----------QGG 260 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~g-p~GG~iv~~~-~l~~~l~~~~~~~~----------~~~ 260 (1342)
++||+|++|+.|....+..... ..|++++||+ |++++ +.||++++++ ++.+.+......+. ++.
T Consensus 152 ~~li~D~a~~~g~~~~~~~~~~--~~d~~~~S~~~~K~l~~~g~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~ 229 (373)
T 3frk_A 152 LKLIEDAAQAHGSLYKGMKVGS--LGDAAGFSFYPAKNLGSLGDGGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNS 229 (373)
T ss_dssp CEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCCSSSCEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBC
T ss_pred CEEEEECCcccCCEECCEeccc--cccEEEEeCcCCCccCccceeEEEEeCCHHHHHHHHHHHhcCcccCCccccccccC
Confidence 9999999999876533332222 2589999966 99955 4569988875 46555543221111 112
Q ss_pred CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCC----eEEEEEccCCCCCHHHHHHHHHH
Q psy13354 261 PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKS----HIILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 261 ~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~----~~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
...+..+++..+.. +.++...++..++++++.+.|.+.++.+...+... +.+.+... +.+.+...|.+
T Consensus 230 ~~~~~~aa~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~ 301 (373)
T 3frk_A 230 RLDELQAGFLRVKL----KYLDKWNEERRKIAQKYIAGINNPNVIIPVEADYAKHVWYTFVIRSE----KRDELQKYLNN 301 (373)
T ss_dssp CCCHHHHHHHHHHH----HTHHHHHHHHHHHHHHHHHHCCCTTEECCCCCTTEECCCSSEEEEES----SHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhccCceEeccCCCCCceeeEEEEEEeC----CHHHHHHHHHH
Confidence 22344444433322 24556778888899999999988774432211111 12223322 34445555556
Q ss_pred CCceeeecc
Q psy13354 337 ANIICNKNS 345 (1342)
Q Consensus 337 ~GI~v~~~~ 345 (1342)
+||.+++.+
T Consensus 302 ~gI~v~~~~ 310 (373)
T 3frk_A 302 NGIGTLIHY 310 (373)
T ss_dssp TTBCCBCSC
T ss_pred CCCCcccCc
Confidence 699998765
No 143
>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*
Probab=99.78 E-value=1.9e-18 Score=204.66 Aligned_cols=312 Identities=12% Similarity=0.060 Sum_probs=201.3
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCC--ccCCcchHHHHHHHHHHHHHHHhCCCC--c-eEecCCHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR--YYGGCKFIDLIEKIAINRLKKIFNAEA--A-NVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~--~~~~~~~~~~Le~~~~~~la~~~g~~~--~-vi~~~sGs~A~~ 103 (1342)
.+.+.+++..+|+.+++++.+.+.+ +. +.+.+. .....+...++.+++++++++++|.+. . +++++||++|+.
T Consensus 5 ~~l~~~~~~~~~~~v~~a~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~ 82 (362)
T 2c0r_A 5 AYNFNAGPAALPLEVLERAQAEFVD-YQ-HTGMSIMEMSHRGAVYEAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFA 82 (362)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSS-ST-TSSSCGGGSCTTSHHHHHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHH
T ss_pred eeeccCCCCCCCHHHHHHHHHHHhh-hh-hcCccccccCCCcHHHHHHHHHHHHHHHHHhCCCCCcEEEEECCCchHHHH
Confidence 3567788888999999998887742 21 111110 011123345677789999999999873 3 466668899999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
.++.++++|||+|+++...+..+. ........| .+..++++.+ ....+|.++++ +++ +++++++++++++ +.
T Consensus 83 ~~~~~l~~~gd~vl~~~~~~~~~~-~~~~~~~~g-~~~~v~~~~~~~~~~~~~~~~~~--i~~-~t~~v~~~~~~n~tG~ 157 (362)
T 2c0r_A 83 MIPMNFLKEGQTANYVMTGSWASK-ALKEAKLIG-DTHVAASSEASNYMTLPKLQEIQ--LQD-NAAYLHLTSNETIEGA 157 (362)
T ss_dssp HHHHHHCCTTCEEEEEECSHHHHH-HHHHHHHHS-CEEEEEECGGGTTCSCCCGGGCC--CCT-TEEEEEEESEETTTTE
T ss_pred HHHHhcCCCCCeEEEEecCcHhHH-HHHHHHHhC-CeEEEecccccccccCCCHHHcc--cCC-CcCEEEEeCCcCccce
Confidence 999999999999987653321111 123345557 6666665421 12234665543 433 4566666554544 33
Q ss_pred --cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----
Q psy13354 181 --IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV---- 253 (1342)
Q Consensus 181 --~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~---- 253 (1342)
.++++| +|+++|+|++|+.|... . .+...|++++|+||++ ||.| ||+++++++++.+....
T Consensus 158 ~~~~l~~i------~~~~vivD~a~~~~~~~----~-~~~~~d~~~~s~~K~~-g~~G~G~l~~~~~~~~~l~~~~~~~~ 225 (362)
T 2c0r_A 158 QFKAFPDT------GSVPLIGDMSSDILSRP----F-DLNQFGLVYAGAQKNL-GPSGVTVVIVREDLVAESPKHLPTML 225 (362)
T ss_dssp ECSSCCCC------TTSCEEEECTTTTTSSC----C-CGGGCSEEEEETTTTT-CCSSCEEEEEEGGGSSSCCTTSCGGG
T ss_pred eccccccc------CCCEEEEEChhhccCCc----c-chhHCcEEEEeccccc-cCcCcEEEEEcHHHHhhccccCchHH
Confidence 366666 89999999999876431 1 1222489999999999 7889 99999998765554311
Q ss_pred -------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-c-EEeeCC--CCCeEEEEEcc
Q psy13354 254 -------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-I-RIVSGG--TKSHIILVDLR 321 (1342)
Q Consensus 254 -------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~-~~~~~~--~~~~~v~i~~~ 321 (1342)
.....++++.+.+.++..++...... +++.+.+++.++++++.+.|.+.| + ++..++ ....++++.++
T Consensus 226 ~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (362)
T 2c0r_A 226 RYDTYVKNNSLYNTPPSFGIYMVNEVLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLA 305 (362)
T ss_dssp CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECS
T ss_pred hHHHHhhccCcCCCchHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccccCCChHHcCCcEEEEEcC
Confidence 11223456667777777666554433 578889999999999999999987 6 764321 13456777776
Q ss_pred CCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 322 NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 322 ~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
....+.+++.. |.++||.+.++..+ .+++|++++..++
T Consensus 306 ~~~~~~~~~~~-L~~~gi~~~~g~~~--------~~~iRis~~~~~~ 343 (362)
T 2c0r_A 306 SEELEKEFVKA-SEQEGFVGLKGHRS--------VGGLRASIYNAVP 343 (362)
T ss_dssp CHHHHHHHHHH-HHHTTEESCBCCTT--------TCSEEEECCTTSC
T ss_pred CcchHHHHHHH-HHHCCCeeccCCCC--------CCEEEEECCCCCC
Confidence 42223445554 55669987643211 2469999987665
No 144
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*
Probab=99.78 E-value=1.2e-17 Score=198.80 Aligned_cols=311 Identities=18% Similarity=0.104 Sum_probs=190.2
Q ss_pred HHHHHHHHHHhcc--Cceeeeec--CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-
Q psy13354 15 IWEIILKEKQRQN--NNIELIAS--ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE- 89 (1342)
Q Consensus 15 ~~~~~~~~~~~~~--~~i~l~a~--~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~- 89 (1342)
.+..++....... +.+++..+ ...+++.+++++. .+ .+ ...+++.+++.+++++|.+
T Consensus 14 ~~~~~~~~i~~~g~~~v~~~~~~~~~~~~~~~v~~a~~-----~~----------~~---~~~~~~~~~~~~a~~~g~~~ 75 (374)
T 2aeu_A 14 ARKIILEILNEKGRDALYDLSGLSGGFLIDEKDKALLN-----TY----------IG---SSYFAEKVNEYGLKHLGGDE 75 (374)
T ss_dssp HHHHHHHHHHHTCGGGCEECSSCCCCCCCCHHHHHHHT-----ST----------TH---HHHHHHHHHHHHHHHHTCCT
T ss_pred HHHHHHHHHhccCccceeeecccCCCCCCCHHHHHHHH-----Hh----------cC---chHHHHHHHHHHHHHhCCCC
Confidence 4444444433322 34544443 3567777888865 11 00 1245566777888899982
Q ss_pred -CceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCe
Q psy13354 90 -AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPK 168 (1342)
Q Consensus 90 -~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~ 168 (1342)
+.+++++||++|+..++.++ |||+|+++.+.|+++++........|.. ++.+ .|++++++. + .+++
T Consensus 76 ~~~~~~~~ggt~a~~~~~~~~--~gd~Vl~~~~~y~~~~~~~~~~~~~g~~--~~~v-------~d~~~l~~~-~-~~~~ 142 (374)
T 2aeu_A 76 NDKCVGFNRTSSAILATILAL--KPKKVIHYLPELPGHPSIERSCKIVNAK--YFES-------DKVGEILNK-I-DKDT 142 (374)
T ss_dssp TEEEEEESSHHHHHHHHHHHH--CCSEEEEECSSSSCCTHHHHHHHHTTCE--EEEE-------SCHHHHHTT-C-CTTE
T ss_pred cceEEEEcChHHHHHHHHHhC--CCCEEEEecCCCCccHHHHHHHHHcCcE--EEEe-------CCHHHHHhc-C-CCcc
Confidence 33444559999999999988 9999999888887777655455666764 4433 288999887 4 4567
Q ss_pred E-EEEcCCCCC-c--ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCCCeeEEEEec
Q psy13354 169 L-IIAGASAYS-Q--YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGPRGGFILMKK 243 (1342)
Q Consensus 169 l-iv~~~s~~~-~--~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~GG~iv~~~ 243 (1342)
+ +++++++++ + ..++++|.++|++||++||+|++|+.+.........+.. ..|++++|+||+++|+.+||+++++
T Consensus 143 ~~v~~~~p~nptG~~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~di~~~S~sK~l~g~~~G~~~~~~ 222 (374)
T 2aeu_A 143 LVIITGSTMDLKVIELENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLLAGKK 222 (374)
T ss_dssp EEEEECBCTTSCBCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHTTCCCHHHHTCSEEEEETTSSSSSCSCEEEEEEH
T ss_pred EEEEEccCCCCCCCCcccHHHHHHHHHHcCCEEEEECCcccccccccccCCccccCCcEEEecCcccccCcceEEEEECH
Confidence 7 777666666 3 458999999999999999999998776421111110111 3589999999999777779999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH--------HHHHHHh----CCcEEeeCCC
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKI--------LSKILDQ----RGIRIVSGGT 311 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~--------l~~~L~~----~g~~~~~~~~ 311 (1342)
++++.+......+.. +++...+.++..++.. .. . +..+++.++++. +.+.|.. .|+.+...+.
T Consensus 223 ~~~~~l~~~~~~~~~-~~~~~~~~a~~~al~~-~~--~-~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~ 297 (374)
T 2aeu_A 223 ELVDKIYIEGTKFGL-EAQPPLLAGIYRALKN-FN--L-ERIRKAFERAKNFDLSKIEKLNKELKAIDDNINIVYERTPT 297 (374)
T ss_dssp HHHHHHHHHHHTTTC-BCCHHHHHHHHHHHHH-CC--H-HHHHHHHHHHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSS
T ss_pred HHHHHHHHhhccccC-CCCHHHHHHHHHHHHH-Hh--H-HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccCcceeeCCc
Confidence 998888764332222 2334444444444433 22 1 123334444433 4444443 2455433333
Q ss_pred CCeEEEEEccCCC---CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 312 KSHIILVDLRNKK---ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 312 ~~~~v~i~~~~~~---~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+.++.|.+..... .+.+++..+++++||.+.++..+ +.. .+++|++++..
T Consensus 298 g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~--~~~---~~~lRi~~~~~ 350 (374)
T 2aeu_A 298 GFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGM--PGA---SKSLRIDLTSR 350 (374)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSS--CSS---CCSEEEETTSG
T ss_pred eEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCC--CCC---CCeEEEEcCCc
Confidence 3334444332110 01125667777789999876432 111 35799998753
No 145
>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*
Probab=99.78 E-value=1.1e-17 Score=199.92 Aligned_cols=284 Identities=13% Similarity=0.115 Sum_probs=188.3
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCCCCEE
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNPGDTI 116 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~pGD~V 116 (1342)
.+++.+++++.+.+.... + .+.......++++ .+++++|.++.++++ +|++|+..++.++ +++||+|
T Consensus 14 ~~~~~~~~a~~~~l~~~~---~----~~~~~~~~~~l~~----~la~~~~~~~~i~~~-sGt~al~~~l~~l~~~~gd~V 81 (388)
T 1b9h_A 14 QYDDAERNGLVRALEQGQ---W----WRMGGDEVNSFER----EFAAHHGAAHALAVT-NGTHALELALQVMGVGPGTEV 81 (388)
T ss_dssp CCCHHHHHHHHHHHHTSC---C----BTTTCSHHHHHHH----HHHHHTTCSEEEEES-CHHHHHHHHHHHTTCCTTCEE
T ss_pred CCCHHHHHHHHHHHHcCC---e----eecCCHHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHHHcCCCCcCEE
Confidence 455789999888885310 1 1233444555555 888999988777777 8899999999999 8999999
Q ss_pred EEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcC
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNIN 194 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~g 194 (1342)
+++...|++. ...+...|. +++.+++++ ++.+|++++++++++ ++++|+ +.|.. ...++++|.++|++||
T Consensus 82 i~~~~~~~~~---~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~--~~n~tG~~~~l~~i~~la~~~~ 153 (388)
T 1b9h_A 82 IVPAFTFISS---SQAAQRLGA--VTVPVDVDAATYNLDPEAVAAAVTP-RTKVIM--PVHMAGLMADMDALAKISADTG 153 (388)
T ss_dssp EEESSSCTHH---HHHHHHTTC--EEEEECBCTTTCCBCHHHHHHHCCT-TEEEEC--CBCGGGCCCCHHHHHHHHHHHT
T ss_pred EECCCccHHH---HHHHHHcCC--EEEEEecCCCcCCCCHHHHHHhcCc-CceEEE--EeCCccCcCCHHHHHHHHHHcC
Confidence 9877665544 445566677 455556664 478999999998864 445555 33333 5569999999999999
Q ss_pred CEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEech-h--HHHHhhccCC--------c---cc
Q psy13354 195 SYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMKKK-Y--KKIINSAVFP--------G---IQ 258 (1342)
Q Consensus 195 i~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~~~-l--~~~l~~~~~~--------~---~~ 258 (1342)
++||+|++|+.|....+.....+. |+.++||| |+++|+.||+++++++ + .+.+...... + ..
T Consensus 154 ~~li~D~a~~~g~~~~~~~~~~~~--~i~~~S~s~~K~l~g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (388)
T 1b9h_A 154 VPLLQDAAHAHGARWQGKRVGELD--SIATFSFQNGKLMTAGEGGAVVFPDGETEKYETAFLRHSCGRPRDDRRYFHKIA 231 (388)
T ss_dssp CCBCEECTTCTTCEETTEEGGGSS--SCEEEECCTTSSSCSSSCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSCCCCSC
T ss_pred CEEEEecchhcCCccCCeeccccc--ceEEEEccCCCcccCCCeEEEEECCHHHHHHHHHHHHHhCCCCccCccceeecc
Confidence 999999999877654322222222 55566655 8887777799999885 5 5555322110 0 01
Q ss_pred cC--CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC-----CCCCeEEEEEccCCC--CCHH
Q psy13354 259 GG--PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-----GTKSHIILVDLRNKK--ITGK 328 (1342)
Q Consensus 259 ~~--~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-----~~~~~~v~i~~~~~~--~~~~ 328 (1342)
++ ..++..+++... .+ +.+++..+++.++++++.+.|.+. |+.+... +..++++|+.+++.. ...+
T Consensus 232 g~~~~~~~~~~a~~~~---~~-~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (388)
T 1b9h_A 232 GSNMRLNEFSASVLRA---QL-ARLDEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLTEERRNA 307 (388)
T ss_dssp CCBCBCBHHHHHHHHH---HH-TTHHHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCCHHHHHH
T ss_pred cccCCcCHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCcCCCccceEEEEEEeCCcCcccHHH
Confidence 11 123333333222 22 256667888899999999999986 7776542 234678999987531 2334
Q ss_pred HHHHHHHHCCceeeeccCCC
Q psy13354 329 IAESILESANIICNKNSIPN 348 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~ 348 (1342)
+...+. ++||.+.+++.|.
T Consensus 308 l~~~L~-~~gI~v~~~~~~~ 326 (388)
T 1b9h_A 308 LVDRLV-EAGLPAFAAFRAI 326 (388)
T ss_dssp HHHHHH-HTTCCEEECCCCG
T ss_pred HHHHHH-HCCCCcccccCcc
Confidence 555555 5699998865543
No 146
>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}
Probab=99.78 E-value=6.7e-18 Score=205.76 Aligned_cols=332 Identities=11% Similarity=-0.023 Sum_probs=203.0
Q ss_pred cCce-eeeecCCCCcHHHHHHHhHHHHhcccc---CC--CC----CCccCCcchHHHHHHHHHHHHHHHhCCC---CceE
Q psy13354 27 NNNI-ELIASENYTSLAVMEAQGTLLTNKYAE---GY--PG----KRYYGGCKFIDLIEKIAINRLKKIFNAE---AANV 93 (1342)
Q Consensus 27 ~~~i-~l~a~~n~l~~~v~eal~~~l~~~~~~---g~--~~----~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi 93 (1342)
.+.+ .|..+.+..+|.+.+++.+++.+.+.. +. +. ...|....+..++++++++++.+.+|.. +.++
T Consensus 31 ~~~i~~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~l~~~~g~~~~~~~i~ 110 (444)
T 3if2_A 31 DQPVNMLGGGNPAKIDAVNELFLETYKALGNDNDTGKANSSAIISMANYSNPQGDSAFIDALVGFFNRHYDWNLTSENIA 110 (444)
T ss_dssp SSCCEECSCCCCCCCHHHHHHHHHHHHHHHSCSCTTCCCCHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEE
T ss_pred chhhhccCCCCCCcccchHHHHHHHHHHHHhccccccccchhhhhhhccCCCCCCHHHHHHHHHHHHhhcCCCCCHHHEE
Confidence 4667 787887777777667666665433221 00 10 1224445556788998888887776643 5566
Q ss_pred ecCCHHHHHHHHHHHccCCCC--------------EEEEe-eccCCccchhhH---HhhhCCceeEEEEecCCC-----C
Q psy13354 94 QPHSGSQANQAVFFSVLNPGD--------------TIMGM-SLQEGGHLTHGM---MLNMSGKWFNSICYGLNK-----K 150 (1342)
Q Consensus 94 ~~~sGs~A~~~al~al~~pGD--------------~Vlv~-~~~~~~~~s~~~---~~~~~g~~~~~v~~~~~~-----~ 150 (1342)
+++||++|+..++.+++.+|| +|+++ .+.++++..... .+...|. .+++++.++ +
T Consensus 111 ~t~G~t~al~~~~~~l~~~gd~~~~~~~~~~g~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~~~ 188 (444)
T 3if2_A 111 LTNGSQNAFFYLFNLFGGAFVNEHSQDKESKSVDKSILLPLTPEYIGYSDVHVEGQHFAAVLP--HIDEVTHDGEEGFFK 188 (444)
T ss_dssp EESSHHHHHHHHHHHSSEEEECC-------CEEEEEEEESSSSCCGGGTTCCSSSCCEEECCC--EEEEEEETTEEEEEE
T ss_pred EecCcHHHHHHHHHHHhCCCccccccccccccccceEEEeCCCCccchhhcccccchhhccCc--eEEecccccccCccc
Confidence 666999999999999999998 78764 555554433211 1222333 555556553 2
Q ss_pred CCCCHHHHHHHHH--hcCCeEEEEcCCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCCCCCCCc
Q psy13354 151 EKIDYKKVEYLAK--KNKPKLIIAGASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPNPVPFAD 221 (1342)
Q Consensus 151 ~~id~e~Le~~i~--~~~~~liv~~~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~~l~~~D 221 (1342)
+.+|++++++++. ..+++++++++++|| ...+ +++|+++|++||++||+|++|+.+..... .........+
T Consensus 189 ~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~~~~~l~~i~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~ 268 (444)
T 3if2_A 189 YRVDFEALENLPALKEGRIGAICCSRPTNPTGNVLTDEEMAHLAEIAKRYDIPLIIDNAYGMPFPNIIYSDAHLNWDNNT 268 (444)
T ss_dssp EECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTE
T ss_pred cCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcCCHHHHHHHHHHHHHCCCEEEEECCCCCcccccccccccccCCCCE
Confidence 4789999998742 234566666555555 3335 89999999999999999999975321110 0000112357
Q ss_pred EEEecCCccCCCCCe---eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhcc--chHHH-HHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGPRG---GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK--PDFKI-YQKQVVKNAKIL 295 (1342)
Q Consensus 222 ivv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~--~~~~~-~~~~l~~~a~~l 295 (1342)
++++|+||+. +.| ||+++++++++.+......+.++.+ ...+.++...+ .... ....+ ..+.+.++++.+
T Consensus 269 i~~~S~sK~~--~~G~r~G~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~a~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~ 344 (444)
T 3if2_A 269 ILCFSLSKIG--LPGMRTGIIVADAKVIEAVSAMNAVVNLAPT-RFGAAIATPLV-ANDRIKQLSDNEIKPFYQKQATLA 344 (444)
T ss_dssp EEEEESTTTT--CGGGCCEEEECCHHHHHHHHHHHHHHHSSCC-CHHHHHHHHHH-HTSHHHHHHHHTHHHHHHHHHHHH
T ss_pred EEEechhhcc--CCCCceEEEEECHHHHHHHHHHHHhccCCCC-hHHHHHHHHHH-HcCchhHHHHHHHHHHHHHHHHHH
Confidence 8899999964 334 9999999988888764433333332 23333333222 2211 11222 455677777777
Q ss_pred HHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCC----ccccccccccccc
Q psy13354 296 SKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEK----PYFTSGIRLGSSA 365 (1342)
Q Consensus 296 ~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~----~~~~~~lRi~~~~ 365 (1342)
.+.|.+. ++.+. .+..++++|+.++....+.+.+...+.++||.+.++..+..... ....+++|++++.
T Consensus 345 ~~~l~~~l~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~ 421 (444)
T 3if2_A 345 VKLLKQALGDYPLMIH-KPEGAIFLWLWFKDLPISTLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA 421 (444)
T ss_dssp HHHHHHHSSSSSEEEE-CCCBSSEEEEEETTCSSCHHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS
T ss_pred HHHHHHhcccCCceEe-cCCccEEEEEEcCCCCCCHHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC
Confidence 7777652 55554 34667899999886333444444445667999998765432210 1123579999986
No 147
>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}
Probab=99.78 E-value=1.5e-17 Score=197.98 Aligned_cols=278 Identities=13% Similarity=0.095 Sum_probs=181.5
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccC-CcchHHHHHHHHHHHH-HHHhC-CCCceEecCCHHHHHHHHHHHc-cCCCCEE
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYG-GCKFIDLIEKIAINRL-KKIFN-AEAANVQPHSGSQANQAVFFSV-LNPGDTI 116 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~-~~~~~~~Le~~~~~~l-a~~~g-~~~~vi~~~sGs~A~~~al~al-~~pGD~V 116 (1342)
+.+++++.+.+.+.+ +. .++...++++ .+ ++++| .+++++++ ||++|+..++.++ ++|||+|
T Consensus 16 ~~i~~a~~~~~~~~~---------~~~~~~~~~~l~~----~~~a~~~g~~~~~v~~~-sgt~al~~al~~l~~~~Gd~V 81 (377)
T 3ju7_A 16 IEYLDELKEIDASHI---------YTNYGPINQRFEQ----TIMSGFFQNRGAVTTVA-NATLGLMAAIQLKKRKKGKYA 81 (377)
T ss_dssp GGGHHHHHHHHHHTC---------CSSSCHHHHHHHH----HHHHHTSTTCSEEEEES-CHHHHHHHHHHHHSCTTCCEE
T ss_pred HHHHHHHHHHHHcCC---------cccCCHHHHHHHH----HHHHHHhCCCCeEEEeC-CHHHHHHHHHHHcCCCCcCEE
Confidence 347888888875321 22 2344555555 88 99999 56666666 9999999999998 8999999
Q ss_pred EEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcC--CeEEEEcCCCCCcccCHHHHHHHHHHc
Q psy13354 117 MGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNK--PKLIIAGASAYSQYIDFERFYHIAKNI 193 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~--~~liv~~~s~~~~~~~l~~I~~la~~~ 193 (1342)
+++.+.|++ ....+...|. +++.++.+ ++|.+|++++++++...+ +++|+.++ .++...++++|.++|+ |
T Consensus 82 i~~~~~~~~---~~~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~~-~~G~~~~~~~i~~la~-~ 154 (377)
T 3ju7_A 82 LMPSFTFPA---TPLAAIWCGL--EPYFIDISIDDWYMDKTVLWDKIEELKEEVAIVVPYA-TFGSWMNLEEYEELEK-K 154 (377)
T ss_dssp EEESSSCTH---HHHHHHHTTC--EEEEECBCTTTCSBCHHHHHHHHHHHGGGEEEECCBC-GGGBCCCCHHHHHHHH-T
T ss_pred EECCCCcHH---HHHHHHHcCC--EEEEEecCCccCCcCHHHHHHHHhcCCCCceEEEEEC-CCCCccCHHHHHHHHh-c
Confidence 988866654 4445566677 55555666 578999999999883323 55555322 2345669999999999 9
Q ss_pred CCEEEEEcccchhhhhcCCCC-CCCCCCcEEEec--CCccCCCCCeeEEEEec-hhHHHHhhccCCc----------ccc
Q psy13354 194 NSYFMVDMAHYAGLIAAGEYP-NPVPFADFITST--THKSLRGPRGGFILMKK-KYKKIINSAVFPG----------IQG 259 (1342)
Q Consensus 194 gi~LIvDea~~~g~~~~~~~~-~~l~~~Divv~S--~sK~l~gp~GG~iv~~~-~l~~~l~~~~~~~----------~~~ 259 (1342)
|++||+|++|++|....+... ..+ .|+.++| .+|+++++.||++++++ ++.+.++.....+ .++
T Consensus 155 ~~~vi~D~a~a~g~~~~~~~~g~~~--~d~~~~S~~~~K~l~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~ 232 (377)
T 3ju7_A 155 GVPVVVDAAPGFGLMNGGMHYGQDF--SGMIIYSFHATKPFGIGEGGLIYSKNEEDIQRIKRMGNFGFDTNRECTMMGFN 232 (377)
T ss_dssp TCCBEEECTTCTTCEETTEETTTTC--SSEEEEECBTTSSSCCBSCEEEEESCHHHHHHHHHHTBTTBCTTSCBCSSCCB
T ss_pred CCEEEEECCCccCCeECCEeccCCC--CcEEEEECCCCCcCCCCCcEEEEECCHHHHHHHHHHHhcCCCCCCceeecccc
Confidence 999999999998865443322 122 3565555 56999666668888765 5666665433211 122
Q ss_pred CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC---cEEeeCCC--CC-eEEEEEccCCCCCHHHHHHH
Q psy13354 260 GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG---IRIVSGGT--KS-HIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 260 ~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g---~~~~~~~~--~~-~~v~i~~~~~~~~~~~~~~l 333 (1342)
....+..+++..+..+ .++...++..++++++.+.|.+.+ +.+..... .. .++.+.+++. .+.+.+...
T Consensus 233 ~~~~~~~aa~~~~~l~----~l~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~ 307 (377)
T 3ju7_A 233 CKMSEYAAAIGIATMK----KWDDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEE-VRNKQVIED 307 (377)
T ss_dssp CCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTT-SCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCCh-hhHHHHHHH
Confidence 2334444444434332 455677888899999999998864 22222111 11 2334554432 245666777
Q ss_pred HHHCCceeeeccC
Q psy13354 334 LESANIICNKNSI 346 (1342)
Q Consensus 334 l~~~GI~v~~~~~ 346 (1342)
|+++||.++..+.
T Consensus 308 L~~~gI~~~~~~~ 320 (377)
T 3ju7_A 308 LKKQKIEARLYFS 320 (377)
T ss_dssp HHTTTBCCBCTTS
T ss_pred HHHCCCceecccC
Confidence 7777999987654
No 148
>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*
Probab=99.78 E-value=4.1e-17 Score=202.77 Aligned_cols=285 Identities=11% Similarity=0.045 Sum_probs=195.7
Q ss_pred CCcchHHHHHHHHHHHHHHHhCCC---Cce--EecCCHHHHHHHHHHHccCCC--------CEEEEeeccCCccchhhHH
Q psy13354 66 GGCKFIDLIEKIAINRLKKIFNAE---AAN--VQPHSGSQANQAVFFSVLNPG--------DTIMGMSLQEGGHLTHGMM 132 (1342)
Q Consensus 66 ~~~~~~~~Le~~~~~~la~~~g~~---~~v--i~~~sGs~A~~~al~al~~pG--------D~Vlv~~~~~~~~~s~~~~ 132 (1342)
...+...++++++++++++++|.+ +.+ ++++||++|+..++.++..+| |+|++....| .+....
T Consensus 132 ~~~p~~~~le~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g~~~d~Vi~~~~~~---~~~~~~ 208 (514)
T 3mad_A 132 DLWPSTAKFEAEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKGITAPEAVVPVSAH---AAFDKA 208 (514)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHCCSSCEEEEETTSC---THHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcCCCCCeEEEeCccc---hHHHHH
Confidence 345567789999999999999987 454 666699999999999998776 9999776544 445555
Q ss_pred hhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhh-
Q psy13354 133 LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIA- 209 (1342)
Q Consensus 133 ~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~- 209 (1342)
+...|. .++.++.++++.+|++++++++++ ++++|++++++++ ...++++|+++|++||++||+|++|+.+...
T Consensus 209 ~~~~G~--~v~~v~~~~~~~~d~~~Le~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~~i~livDea~~~~~~~~ 285 (514)
T 3mad_A 209 AQYFGI--KLVRTPLDADYRADVAAMREAITP-NTVVVAGSAPGYPHGVVDPIPEIAALAAEHGIGCHVDACLGGFILPW 285 (514)
T ss_dssp HHHHTC--EEEEECBCTTSCBCHHHHHHHCCT-TEEEEEEETTCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTTTTHHH
T ss_pred HHHcCC--eeEEeeeCCCCCCCHHHHHHHhcc-CCEEEEEeCCCCCCccccCHHHHHHHHHHhCCeEEEecccccccchh
Confidence 566677 455557777899999999999876 4566666666665 4558999999999999999999999865431
Q ss_pred ---cCC----CCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc----------CCccccCCcHHHHHHHHH
Q psy13354 210 ---AGE----YPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV----------FPGIQGGPLMHVIAAKAV 271 (1342)
Q Consensus 210 ---~~~----~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~----------~~~~~~~~~~~~~~Aaa~ 271 (1342)
.+. +......+|++++|+||++.++.| |+++++++......... .....++.......++.+
T Consensus 286 ~~~~g~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~~~~~~a~~a 365 (514)
T 3mad_A 286 AERLGYPVPPFDFRLEGVTSVSADTHKYGYGAKGTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRPGALSATAWA 365 (514)
T ss_dssp HHHTTCCCCCCSTTSTTCCEEEECTTTTTCCCSSCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCCHHHHHHHHH
T ss_pred HHhcCCCCCcccccCCCCcEEEECchhccCCCCCeEEEEEeCHHHhccccccccccCCCcccCCccCCCCchHHHHHHHH
Confidence 111 111122469999999999767766 99988886544322110 011123333333445555
Q ss_pred HHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCC
Q psy13354 272 AFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDP 350 (1342)
Q Consensus 272 al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~ 350 (1342)
++......++++..+++.++++++.+.|.+. |+++..++ ..++++.... ....++...++ ++||.+....+
T Consensus 366 al~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~--~~~~~~~~~~-~~~~~l~~~L~-~~Gi~v~g~~~---- 437 (514)
T 3mad_A 366 AMLSLGEEGYLDATRRILQAADRLKAGVRAIPSLKILGDP--LWVIAVASDE-LNIYQVMEEMA-GRGWRLNGLHR---- 437 (514)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCEESSCC--SSEEEEECSS-SCHHHHHHHHH-TTTCBCEEETT----
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHhhCCCeEEeCCC--eEEEEEeCCC-CCHHHHHHHHH-hcCCEeccCCC----
Confidence 5544444567888999999999999999986 78875533 4466776532 22345555555 45998843321
Q ss_pred CCccccccccccccccccc
Q psy13354 351 EKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 351 ~~~~~~~~lRi~~~~~~t~ 369 (1342)
+..+|++++..++.
T Consensus 438 -----~~~~Ri~~~~~~~~ 451 (514)
T 3mad_A 438 -----PPAFHVALTLRHTE 451 (514)
T ss_dssp -----TTEEEEECCGGGGS
T ss_pred -----CCeEEEEEecCCCC
Confidence 23589988866553
No 149
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Probab=99.78 E-value=5e-17 Score=194.49 Aligned_cols=287 Identities=15% Similarity=0.128 Sum_probs=186.4
Q ss_pred eeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc--
Q psy13354 32 LIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-- 109 (1342)
Q Consensus 32 l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-- 109 (1342)
+..+...+++.+++++.+.+... ++...+...++++ .+++++|.+++++++ +||+|+..++.++
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~~~~---------~~~~~~~~~~l~~----~la~~~~~~~~i~~~-sGt~a~~~al~~~~~ 71 (390)
T 3b8x_A 6 YPLASSTWDDLEYKAIQSVLDSK---------MFTMGEYVKQYET----QFAKTFGSKYAVMVS-SGSTANLLMIAALFF 71 (390)
T ss_dssp BCSCCCCCCHHHHHHHHHHHHHT---------CCSSCHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHTTS
T ss_pred ccCCCCCCCHHHHHHHHHHHHcC---------CCCCChHHHHHHH----HHHHHHCCCcEEEEC-CHHHHHHHHHHHHHh
Confidence 33467788999999988887531 1223344445555 888899988665555 9999999999998
Q ss_pred -----cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCH
Q psy13354 110 -----LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183 (1342)
Q Consensus 110 -----~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l 183 (1342)
+.+||+|+++...|++. ...+...|. +++.++.++ ++.+|++++++.+++ +++++++++ .++.+.++
T Consensus 72 ~~~~~~~~g~~Vi~~~~~~~~~---~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~g~~~~~ 144 (390)
T 3b8x_A 72 TKKPRLKKGDEIIVPAVSWSTT---YYPLQQYGL--RVKFVDIDINTLNIDIESLKEAVTD-STKAILTVN-LLGNPNNF 144 (390)
T ss_dssp SSSCSCCTTCEEEEESSSCHHH---HHHHHHTTC--EEEEECBCTTTCSBCHHHHHHHCCT-TEEEEEEEC-GGGCCCCH
T ss_pred hhhcCCCCcCEEEECCCCcHHH---HHHHHHcCC--EEEEEecCccccCcCHHHHHHHhCc-CCeEEEEEC-CccChhhH
Confidence 78999999887665544 444455676 555556664 488999999998875 455555542 23345799
Q ss_pred HHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEec--CCccCCCCCeeEEEEec-hhHHHHhhccCCc----
Q psy13354 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITST--THKSLRGPRGGFILMKK-KYKKIINSAVFPG---- 256 (1342)
Q Consensus 184 ~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S--~sK~l~gp~GG~iv~~~-~l~~~l~~~~~~~---- 256 (1342)
++|.++|++||++||+|++|+.|....+...+. ..|+.++| .+|.+.++.||++++++ ++.+.++......
T Consensus 145 ~~i~~l~~~~~~~li~D~a~~~g~~~~~~~~g~--~~~~~~~s~~~~k~~~~g~gG~~~~~~~~l~~~~~~~~~~g~~~~ 222 (390)
T 3b8x_A 145 DEINKIIGGRDIILLEDNCESMGATFNNKCAGT--FGLMGTFSSFYSNHIATMEGGCIVTDDEEIYHILLCIRAHGWTRN 222 (390)
T ss_dssp HHHHHHHTTSCCEEEEECTTCTTCEETTEETTS--SSSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHTBTTBSTT
T ss_pred HHHHHHHHHcCCEEEEECcCcccCEECCccccc--ccceEEEEccCCCCCccCCceEEEeCCHHHHHHHHHHHhcCCCcc
Confidence 999999999999999999999876543221221 13555544 35667566779999987 5655544321110
Q ss_pred -------------------------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCC
Q psy13354 257 -------------------------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGG 310 (1342)
Q Consensus 257 -------------------------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~ 310 (1342)
.++....+..++++.+.. +.+++..++..++++++.+.|.+. |+.+...+
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l----~~l~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~ 298 (390)
T 3b8x_A 223 LPKKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQL----KKLPRFISVRRKNAEYFLDKFKDHPYLDVQQET 298 (390)
T ss_dssp SCSEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTTCSSEEECCCC
T ss_pred ccccccccccccccccccccceeccccccCcCHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCCCcccCCCC
Confidence 011112333343333322 255677888899999999999886 67764322
Q ss_pred --CCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeecc
Q psy13354 311 --TKSHIILVDLRNK-KITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 311 --~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
...+.+++.++.. +.+.+.+...|.++||.+++.+
T Consensus 299 ~~~~~~~~~i~~~~~~~~~~~~l~~~L~~~gI~v~~~~ 336 (390)
T 3b8x_A 299 GESSWFGFSFIIKKDSGVIRKQLVENLNSAGIECRPIV 336 (390)
T ss_dssp SBCCCCEEEEEECTTSCCCHHHHHHHHHHTTBCCBCST
T ss_pred CCcccEEEEEEecCcCcccHHHHHHHHHHCCCCeeeec
Confidence 1223456666532 2244555555566799998654
No 150
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}
Probab=99.78 E-value=7e-18 Score=207.62 Aligned_cols=291 Identities=11% Similarity=0.059 Sum_probs=196.3
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCCc-----------eEecCCHHHHHHHHHHHccC-------------------CCC
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEAA-----------NVQPHSGSQANQAVFFSVLN-------------------PGD 114 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~~-----------vi~~~sGs~A~~~al~al~~-------------------pGD 114 (1342)
|...+...++|+++.+++++++|.+.. .++++|||+|+..++.+... +++
T Consensus 110 ~~~~p~~~~lE~~v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~ 189 (481)
T 4e1o_A 110 WASSPACTELEMNVMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARL 189 (481)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTE
T ss_pred cCCCcHHHHHHHHHHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCe
Confidence 456778889999999999999998743 35566999999998887632 567
Q ss_pred EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-----CeEEEEcCCCCC--cccCHHHHH
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-----PKLIIAGASAYS--QYIDFERFY 187 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-----~~liv~~~s~~~--~~~~l~~I~ 187 (1342)
.|+++. .+|.+....+...|. +++.++.++++.+|+++|++++++.+ +.+++.+.++++ ...|+++|+
T Consensus 190 ~v~~s~---~~H~s~~~~~~~~g~--~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~l~~I~ 264 (481)
T 4e1o_A 190 VAYASD---QAHSSVEKAGLISLV--KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDCLSELG 264 (481)
T ss_dssp EEEEET---TSCHHHHHHHHHHTC--EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHH
T ss_pred EEEEcC---cchHHHHHHHHhCCC--ceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCCHHHHH
Confidence 888666 455555655566666 55556777889999999999997642 454554443333 556999999
Q ss_pred HHHHHcCCEEEEEcccchhhhhcCCCCCC---CCCCcEEEecCCccCCCCCe-eEEEEech-hHHHHhhccCCcccc---
Q psy13354 188 HIAKNINSYFMVDMAHYAGLIAAGEYPNP---VPFADFITSTTHKSLRGPRG-GFILMKKK-YKKIINSAVFPGIQG--- 259 (1342)
Q Consensus 188 ~la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~~Divv~S~sK~l~gp~G-G~iv~~~~-l~~~l~~~~~~~~~~--- 259 (1342)
++|++||+|+++|+||+.+.+....+... ++.+|++++++|||+++|.| |+++.++. ...........+...
T Consensus 265 ~la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~~~~yl~~~~~ 344 (481)
T 4e1o_A 265 PICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHFDCTGFWVKDKYKLQQTFSVNPIYLRHANS 344 (481)
T ss_dssp HHHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESBHHHHHTTTCCCCGGGCCTTT
T ss_pred HHHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCCceEEEEEeCHHHHHHHhcCCchhccCccc
Confidence 99999999999999998775433222111 22469999999999988888 77777653 222111111111110
Q ss_pred ------------CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-C
Q psy13354 260 ------------GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK-I 325 (1342)
Q Consensus 260 ------------~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~-~ 325 (1342)
++......++.+++.....++++++.++..++++++.+.|.+. |+++.. ++..+++++.+++.. .
T Consensus 345 ~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~-~~~~~~v~f~~~~~~~~ 423 (481)
T 4e1o_A 345 GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRNDPSFEIPA-KRHLGLVVFRLKGPNSL 423 (481)
T ss_dssp TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTEECCS-CCCSSEEEEEESSCHHH
T ss_pred CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEec-CCceeEEEEEeCCchHH
Confidence 1101123334444444444578888999999999999999986 888754 345678888886432 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.++...+.++..+++.+.... + ...+|++++..++
T Consensus 424 ~~~l~~~L~~~g~~~~~~~~~~----g---~~~lR~~~~~~~t 459 (481)
T 4e1o_A 424 TENVLKEIAKAGRLFLIPATIQ----D---KLIIRFTVTSQFT 459 (481)
T ss_dssp HHHHHHHHHHHCSSBCEEEEET----T---EEEEEEECCCTTC
T ss_pred HHHHHHHHHhCCeEEEEeeEEC----C---EEEEEEEeCCCCC
Confidence 4567777777744565543221 1 3579999876654
No 151
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.78 E-value=7.6e-18 Score=205.36 Aligned_cols=123 Identities=23% Similarity=0.344 Sum_probs=112.3
Q ss_pred eEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe---------CC----CCCChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT---------TE----PQKIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 501 rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t---------~~----~~kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
+|++|||+|.|+.+++++|++.+|+|+.+ +||+++ ++ +.+++++|+|||..+.|.+++.+++.+||
T Consensus 297 ~VliIDEa~~l~~~a~~aLlk~lEe~~~~-~~il~tn~~~~~i~~~~~~~~~~~l~~~i~sR~~~~~~~~~~~~e~~~iL 375 (456)
T 2c9o_A 297 GVLFVDEVHMLDIECFTYLHRALESSIAP-IVIFASNRGNCVIRGTEDITSPHGIPLDLLDRVMIIRTMLYTPQEMKQII 375 (456)
T ss_dssp CEEEEESGGGCBHHHHHHHHHHTTSTTCC-EEEEEECCSEEECBTTSSCEEETTCCHHHHTTEEEEECCCCCHHHHHHHH
T ss_pred eEEEEechhhcCHHHHHHHHHHhhccCCC-EEEEecCCccccccccccccccccCChhHHhhcceeeCCCCCHHHHHHHH
Confidence 69999999999999999999999999988 688888 55 77899999999999999999999999999
Q ss_pred HHHHHhcCCCcchhHHHHHHHhc-CCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 568 CYILNKENIKFETSALNLIATGA-QGSMRDALSLTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 568 ~~~~~~~g~~i~~~al~~La~~~-~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
+.+++.+++.++++++.++++.+ .|++|.++++++++..++ ...||.++|++++...
T Consensus 376 ~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~ 437 (456)
T 2c9o_A 376 KIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELF 437 (456)
T ss_dssp HHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHh
Confidence 99999999999999999999999 999999999999986554 3469999999988654
No 152
>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*
Probab=99.78 E-value=3.7e-18 Score=209.43 Aligned_cols=277 Identities=13% Similarity=0.177 Sum_probs=191.1
Q ss_pred HHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccCCCCE---EEEeeccCCccchhh-HHhhhCCceeE---EEEe
Q psy13354 74 IEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLNPGDT---IMGMSLQEGGHLTHG-MMLNMSGKWFN---SICY 145 (1342)
Q Consensus 74 Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~pGD~---Vlv~~~~~~~~~s~~-~~~~~~g~~~~---~v~~ 145 (1342)
+.+.+++++++++|++ +.+++++|+++++..++.+++.|||. |++....|++....+ ..+...|..+. +...
T Consensus 112 ~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~~~~~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~~~~~v~~~ 191 (465)
T 3e9k_A 112 GDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFFKPTPKRYKILLEAKAFPSDHYAIESQLQLHGLNIEESMRMIK 191 (465)
T ss_dssp TTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHCCCCSSSCEEEEETTCCHHHHHHHHHHHHHTTCCHHHHEEEEC
T ss_pred hHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhccccCCCCEEEEcCCcCCchHHHHHHHHHHcCCcceeeeEEEe
Confidence 3445667999999987 56677779999999999999876655 998876665533322 24556676432 2223
Q ss_pred cCCCCCCCCHHHHHHHHHhc--CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--C
Q psy13354 146 GLNKKEKIDYKKVEYLAKKN--KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--F 219 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i~~~--~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~ 219 (1342)
+.++++.+|++++++++.++ ++++|++++++|+ ...++++|.++|++||++||+|++|+.|.... .+. .
T Consensus 192 ~~~~~~~~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~l~~i~~la~~~g~~vi~D~a~~~g~~~~-----~~~~~~ 266 (465)
T 3e9k_A 192 PREGEETLRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFNIPAITKAGQAKGCYVGFDLAHAVGNVEL-----YLHDWG 266 (465)
T ss_dssp CCTTCSSCCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCCHHHHHHHHHHTTCEEEEECTTTTTTSCC-----CHHHHT
T ss_pred cCCCCCccCHHHHHHHHHhcCCCeEEEEEeCcccCcceeecHHHHHHHHHHcCCEEEEEhhhhcCCcCC-----chhhcC
Confidence 55667889999999999742 4567777665555 55599999999999999999999998776511 111 3
Q ss_pred CcEEEecCCccCC-CCCe-eEEEEechhHHHHhhccCCc------------------------cccCCcHHHHHHHHHHH
Q psy13354 220 ADFITSTTHKSLR-GPRG-GFILMKKKYKKIINSAVFPG------------------------IQGGPLMHVIAAKAVAF 273 (1342)
Q Consensus 220 ~Divv~S~sK~l~-gp~G-G~iv~~~~l~~~l~~~~~~~------------------------~~~~~~~~~~~Aaa~al 273 (1342)
+|++++|+||+++ ||.| |++++++++.+.+......| ..++++....+++.+++
T Consensus 267 ~D~~~~s~~K~l~~gp~~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~a~~aal 346 (465)
T 3e9k_A 267 VDFACWCSYKYLNAGAGGIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGFRISNPPILLVCSLHASL 346 (465)
T ss_dssp CCEEEECSSSTTCCCTTCCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGGCCSCCCHHHHHHHHHHH
T ss_pred CCEEEECcccccccCCCceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHhccCCccHHHHHHHHHHH
Confidence 6999999999995 6777 99999988766554322211 11255555566655555
Q ss_pred HHhccchHHHHHHHHHHHHHHHHHHHHh-----------CCcEEeeCCC---CCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 274 KEVLKPDFKIYQKQVVKNAKILSKILDQ-----------RGIRIVSGGT---KSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 274 ~~~l~~~~~~~~~~l~~~a~~l~~~L~~-----------~g~~~~~~~~---~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
......++++++++..++++++.+.|.+ .|+++..+.. .+.++++.++. ...++...+.+ +||
T Consensus 347 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~--~~~~l~~~L~~-~Gi 423 (465)
T 3e9k_A 347 EIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV--PNKDVFQELEK-RGV 423 (465)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC--TTCCHHHHHHT-TTE
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC--CHHHHHHHHHH-CCE
Confidence 5443335788899999999999999988 5788765321 25677777762 23355666654 599
Q ss_pred eeeeccCCCCCCCccccccccccc-ccccc
Q psy13354 340 ICNKNSIPNDPEKPYFTSGIRLGS-SAITT 368 (1342)
Q Consensus 340 ~v~~~~~p~~~~~~~~~~~lRi~~-~~~~t 368 (1342)
.+... .++.+|+++ +..++
T Consensus 424 ~v~~~----------~~~~iRis~~~~~~t 443 (465)
T 3e9k_A 424 VCDKR----------NPNGIRVAPVPLYNS 443 (465)
T ss_dssp ECEEE----------TTTEEEEBCCTTTCC
T ss_pred EEecC----------CCCEEEEeCcccCCC
Confidence 98721 135799998 55554
No 153
>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}
Probab=99.77 E-value=1.9e-17 Score=195.07 Aligned_cols=296 Identities=11% Similarity=0.084 Sum_probs=192.1
Q ss_pred cCceeeeecCCCC--cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHH
Q psy13354 27 NNNIELIASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQ 103 (1342)
Q Consensus 27 ~~~i~l~a~~n~l--~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~ 103 (1342)
+..|.+..+++++ ++.+.+++.+.+. .. .+|+. ..+ .++++ ++++++|.+ +.+++++||++|+.
T Consensus 15 ~~~id~~~~~~~~~~~~~v~~a~~~~~~-~~-~~y~~------~~~-~~lr~----~la~~~~~~~~~i~~t~g~~~al~ 81 (350)
T 3fkd_A 15 SEIVNFSTTVWTDGDKDHLEKHLVENLN-CI-RHYPE------PDA-GTLRQ----MLAKRNSVDNNAILVTNGPTAAFY 81 (350)
T ss_dssp -CCEECSCCSCCCSCCHHHHHHHHHTGG-GG-GSCCC------TTC-HHHHH----HHHHHTTCCGGGEEEESHHHHHHH
T ss_pred ccEEEccCCCCCCCCCHHHHHHHHHhHh-HH-hcCCC------CcH-HHHHH----HHHHHhCcCHHHEEEcCCHHHHHH
Confidence 4668888887665 4558888877662 22 23332 111 34444 888899976 55666658888999
Q ss_pred HHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC-CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cc
Q psy13354 104 AVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QY 180 (1342)
Q Consensus 104 ~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~ 180 (1342)
.++.++. ||+|++..+.+ ......+...|. +++.++. +++..+++ .+++++++++++|| ..
T Consensus 82 ~~~~~l~--gd~Vi~~~p~~---~~~~~~~~~~g~--~~~~v~~~~~~~~~~~---------~~~~~v~i~~p~nptG~~ 145 (350)
T 3fkd_A 82 QIAQAFR--GSRSLIAIPSF---AEYEDACRMYEH--EVCFYPSNEDIGEADF---------SNMDFCWLCNPNNPDGRL 145 (350)
T ss_dssp HHHHHTT--TCEEEEEESCC---HHHHHHHHHTTC--EEEEEETTSCGGGSCC---------TTCSEEEEESSCTTTCCC
T ss_pred HHHHHHC--CCEEEEeCCCc---HHHHHHHHHcCC--eEEEEecCCccccCcc---------CCCCEEEEeCCCCCcCCC
Confidence 9999988 99999777444 444555666777 4555565 43333444 34566666666665 44
Q ss_pred cCHHHHHHHHHHcC-CEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 181 IDFERFYHIAKNIN-SYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 181 ~~l~~I~~la~~~g-i~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
.+.++|.++++.++ .+||+|++|..............+ ..+++++|+||++ |+.| ||+++++++++.+.....
T Consensus 146 ~~~~~l~~l~~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~r~G~~~~~~~~~~~~~~~~~ 224 (350)
T 3fkd_A 146 LQRTEILRLLNDHPDTTFVLDQSYVSFTTEEVIRPADIKGRKNLVMVYSFSHAY-GIPGLRIGYIVANKDFMKRVAAFST 224 (350)
T ss_dssp CCHHHHHHHHHHCTTSEEEEECTTTTSCSSCCCCGGGGTTCSSEEEEEESHHHH-SCGGGCCEEEECCHHHHHHHHTTCC
T ss_pred CCHHHHHHHHHhCCCCEEEEECchhhhccCcchhhHHhhcCCCEEEEecCchhc-cCcchheEeEEeCHHHHHHHHHhCC
Confidence 58888888888876 799999999754332211111111 2358899999999 5455 999999999999887544
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
.+ +++...+.++..++. ....+.+.. +++.++++++.+.|.+. |+.+. +..++++|+.++.. ...++...+
T Consensus 225 ~~---~~~~~~~~~~~~~l~-~~~~~~~~~-~~~~~~~~~l~~~L~~~~~~~~~--~~~~~~~~~~~~~~-~~~~l~~~L 296 (350)
T 3fkd_A 225 PW---AVNALAIEAAKFILI-HPAQFTLPI-RKWQRNTVDFITALNRLDGVEVH--PSGTTFFLLRLKKG-TAAELKKYM 296 (350)
T ss_dssp TT---CSCHHHHHHHHHHHH-CTTTTCCCH-HHHHHHHHHHHHHHHHSTTEEEC--CCSSSEEEEEESSS-CHHHHHHHH
T ss_pred CC---CCCHHHHHHHHHHHh-CHHHHHHHH-HHHHHHHHHHHHHHhcCCCcEEC--CCCCcEEEEECCCC-CHHHHHHHH
Confidence 33 333444444444443 322122333 33348899999999887 78763 35567788888765 455667777
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
++++||.+.++..++... .+++|++++
T Consensus 297 ~~~~gi~v~~g~~f~~~~----~~~iRis~~ 323 (350)
T 3fkd_A 297 LEEYNMLIRDASNFRGLD----ESYVRITTQ 323 (350)
T ss_dssp HHTTCEECEECTTSTTCC----TTEEEEECC
T ss_pred HHHCCEEEEeCccCCCCC----CCEEEEEcC
Confidence 664799999876554221 467999977
No 154
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*
Probab=99.77 E-value=3.4e-18 Score=204.75 Aligned_cols=276 Identities=19% Similarity=0.157 Sum_probs=181.0
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEe--cCCHHHHHHHHHHHccCCCCEEEE
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQ--PHSGSQANQAVFFSVLNPGDTIMG 118 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~--~~sGs~A~~~al~al~~pGD~Vlv 118 (1342)
..+++++.+........+. .+.+..+......+++ .+++++|.+.++++ ++||++|+..++.++++|||+|++
T Consensus 32 ~~vl~a~~~~~~~~~~~~~-~~~~~y~~~~~~~Le~----~lA~l~g~e~alv~p~~~sGt~Ai~~al~all~~GD~Vl~ 106 (409)
T 3jzl_A 32 AKVLDAFQENKVSDFHFHP-STGYGYDDEGRDTLER----VYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLY 106 (409)
T ss_dssp HHHHHHHHHTTCCGGGGCC-CCTTCTTCHHHHHHHH----HHHHHHTCSEEEEETTSCSHHHHHHHHHHHHCCTTCEEEE
T ss_pred HHHHHHHHHhhhhhhccCC-CcCCCCChhHHHHHHH----HHHHHhCCCcEEEECCCccHHHHHHHHHHHhcCCCCEEEE
Confidence 4577777765422211121 1122122333444554 89999999988873 449999999999999999999998
Q ss_pred ee-ccCCccchhh-------HHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcC----CCCC--cccCHH
Q psy13354 119 MS-LQEGGHLTHG-------MMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA----SAYS--QYIDFE 184 (1342)
Q Consensus 119 ~~-~~~~~~~s~~-------~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~----s~~~--~~~~l~ 184 (1342)
.. ..+++..... ..+...|. ++..++.+++|.+|++++++++++ ++++|++++ ++++ ...+++
T Consensus 107 ~~~~~y~~~~~~~~~~g~~~~~l~~~G~--~~~~v~~~~~g~~d~e~l~~ai~~-~tklV~i~~s~g~p~nptg~v~~l~ 183 (409)
T 3jzl_A 107 ITGQPYDTLEEIVGIRKQGQGSLKDFHI--GYSSVPLLENGDVDFPRIAKKMTP-KTKMIGIQRSRGYADRPSFTIEKIK 183 (409)
T ss_dssp CSSSCCTTHHHHHTSSSSSSSCTGGGTC--EEEECCCCTTSCCCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHH
T ss_pred eCCCCcHhHHHHHhcccchhhHHHHcCC--EEEEeCCCCCCCcCHHHHHHhccC-CCeEEEEECCCCCCCCCcCccccHH
Confidence 76 5555443222 23344455 566667777889999999999875 457777665 5555 444899
Q ss_pred HHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCC---CCeeEEEEechhHHHHhhccCC-cc
Q psy13354 185 RFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRG---PRGGFILMKKKYKKIINSAVFP-GI 257 (1342)
Q Consensus 185 ~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~g---p~GG~iv~~~~l~~~l~~~~~~-~~ 257 (1342)
+|+++|++ ||+++++|++|+.+... ..+.. .+|++++|+||+++| +.||++++++++++.+...... +.
T Consensus 184 ~I~~la~~~~~~~~livD~a~~~~~~~----~~p~~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~ 259 (409)
T 3jzl_A 184 EMIVFVKNINPEVIVFVDNCYGEFVEY----QEPPEVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGI 259 (409)
T ss_dssp HHHHHHHHHCTTCEEEEECTTCTTTSS----CCSGGGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTT
T ss_pred HHHHHHHhhCCCCEEEEeCCccccccc----CCccccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccc
Confidence 99999999 99999999998765431 11222 379999999999955 4579999999999988763221 11
Q ss_pred -c-cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCe-----EEEEEccCCCCCHHHH
Q psy13354 258 -Q-GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSH-----IILVDLRNKKITGKIA 330 (1342)
Q Consensus 258 -~-~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~-----~v~i~~~~~~~~~~~~ 330 (1342)
. .++......++ .+.+. ....++++..+++.++.+.|++.|+++.+. .++ ++.+.+++......++
T Consensus 260 g~~~g~~~~~~~~~----l~gl~-~~~~r~~~~~~~a~~la~~L~~~g~~v~p~--~~~~~~~~i~~i~l~~~~~~~~~~ 332 (409)
T 3jzl_A 260 GREAGASLYSLLEM----YQGFF-LAPHVTAQAIKGARFTAAMLAEFGVEADPV--WDAPRTDLIQSVSFHNKEKMVAFA 332 (409)
T ss_dssp GGGCCCCTTCHHHH----HHHHH-HHHHHHHHHHHHHHHHHHHHHHTTCEEESC--TTSCCSSSCCEEECSCHHHHHHHH
T ss_pred cccccccHHHHHHH----HHHHh-hHHHHHHHHHHHHHHHHHHHHhCCCcccCC--CCCCCccEEEEEEeCCHHHHHHHH
Confidence 1 11111111221 12121 344567888999999999999999988432 333 6777776433233455
Q ss_pred HHHHH
Q psy13354 331 ESILE 335 (1342)
Q Consensus 331 ~~ll~ 335 (1342)
+.+..
T Consensus 333 ~~L~~ 337 (409)
T 3jzl_A 333 QAIQA 337 (409)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55544
No 155
>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*
Probab=99.77 E-value=4.5e-18 Score=204.34 Aligned_cols=289 Identities=14% Similarity=0.084 Sum_probs=186.5
Q ss_pred cCceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHH
Q psy13354 27 NNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVF 106 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al 106 (1342)
...+.+.++++.+++.+++++.+.+... .|.......++++ .+++++|.+++++++ +|++|+..++
T Consensus 30 ~~~id~~~~~~~~~~~v~~a~~~~~~~~---------~y~~~~~~~~l~~----~la~~~~~~~~v~~~-~Gt~a~~~~l 95 (399)
T 2oga_A 30 VPFLDLKAAYEELRAETDAAIARVLDSG---------RYLLGPELEGFEA----EFAAYCETDHAVGVN-SGMDALQLAL 95 (399)
T ss_dssp BCSCCHHHHHHHTHHHHHHHHHHHHHHT---------CCSSSHHHHHHHH----HHHHHTTSSEEEEES-CHHHHHHHHH
T ss_pred CcccccCcCCCCCCHHHHHHHHHHHhcC---------CCCCchhHHHHHH----HHHHHHCCCeEEEec-CHHHHHHHHH
Confidence 4567777777777788999988877431 1222344444544 888999988665555 9999999999
Q ss_pred HHc-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHH
Q psy13354 107 FSV-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184 (1342)
Q Consensus 107 ~al-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~ 184 (1342)
.++ +.+||+|+++...+++ ....+...|. +++.++.++ ++.+|++++++.+++ ++++|++++ ..+...+++
T Consensus 96 ~~~~~~~gd~vl~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~n-~tG~~~~l~ 168 (399)
T 2oga_A 96 RGLGIGPGDEVIVPSHTYIA---SWLAVSATGA--TPVPVEPHEDHPTLDPLLVEKAITP-RTRALLPVH-LYGHPADMD 168 (399)
T ss_dssp HHTTCCTTCEEEEESSSCTH---HHHHHHHTTC--EEEEECBCSSSSSBCHHHHHHHCCT-TEEEECCBC-GGGCCCCHH
T ss_pred HHhCCCCcCEEEECCCccHH---HHHHHHHCCC--EEEEEecCCCCCCcCHHHHHHhcCC-CCeEEEEeC-CcCCccCHH
Confidence 999 8999999987765544 4455566677 445555554 578999999998875 456665432 223556899
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecC--CccCCCC-CeeEEEEe-chhHHHHhhccCCc----
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTT--HKSLRGP-RGGFILMK-KKYKKIINSAVFPG---- 256 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~--sK~l~gp-~GG~iv~~-~~l~~~l~~~~~~~---- 256 (1342)
+|.++|+++|++||+|++|+.|....+.... ...|++++|+ +|+++++ .||+++++ +++++.+.......
T Consensus 169 ~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~--~~~di~~~S~~~sK~~~~~G~~g~~~~~~~~~~~~l~~~~~~g~~~~ 246 (399)
T 2oga_A 169 ALRELADRHGLHIVEDAAQAHGARYRGRRIG--AGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQK 246 (399)
T ss_dssp HHHHHHHHHTCEECEECTTCTTCEETTEETT--CTTCEEEEECCTTSSSCCSSCCEEEEESCHHHHHHHHHHHBTTCSST
T ss_pred HHHHHHHHcCCEEEEECcccccCccCCeecc--cccCEEEEeCCCCccCCcCCceEEEEeCCHHHHHHHHHHHhcCcccc
Confidence 9999999999999999999877433222111 1258999999 6999432 45898886 67777665422211
Q ss_pred ------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEE--EEccCCCCCH
Q psy13354 257 ------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIIL--VDLRNKKITG 327 (1342)
Q Consensus 257 ------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~--i~~~~~~~~~ 327 (1342)
.++...++..++++.+..+ .++...++..++++++.+.|.+. |+.+...+.....+| +.+.. ....
T Consensus 247 ~~~~~~g~~~~~~~~~~a~~~~~l~----~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~~-~~~~ 321 (399)
T 2oga_A 247 YSHETKGTNSRLDEMQAAVLRIRLA----HLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRT-ERRD 321 (399)
T ss_dssp TCCCSCCCBCCCCHHHHHHHHHHHH----THHHHHHHHHHHHHHHHHHTTTCTTCBCCCCCTTEECCCSSEEEEC-SSHH
T ss_pred ccccccccCCCcCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCcceeEEEEEEC-CCHH
Confidence 1111223344444333333 33445677778888999999875 666533233333333 22221 1233
Q ss_pred HHHHHHHHHCCceeeec
Q psy13354 328 KIAESILESANIICNKN 344 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~ 344 (1342)
++...+ .++||.+.+.
T Consensus 322 ~l~~~L-~~~gI~v~~~ 337 (399)
T 2oga_A 322 ELRSHL-DARGIDTLTH 337 (399)
T ss_dssp HHHHHH-HHTTBCCBCS
T ss_pred HHHHHH-HHCCCceecC
Confidence 445554 5569999864
No 156
>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*
Probab=99.77 E-value=2.6e-17 Score=192.76 Aligned_cols=288 Identities=13% Similarity=0.124 Sum_probs=193.9
Q ss_pred CceeeeecCCC--CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CC-CceEecCCHHHH
Q psy13354 28 NNIELIASENY--TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~~n~--l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~-~~vi~~~sGs~A 101 (1342)
+.+.+..+.+. .++.+.+++.+.+......+|+ . ....++++ .++++++ .+ +.+++++||++|
T Consensus 20 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~~~~~~y~------~-~~~~~lr~----~la~~~~~~~~~~~~v~~~~G~~~a 88 (335)
T 1uu1_A 20 DKTYLALNENPFPFPEDLVDEVFRRLNSDALRIYY------D-SPDEELIE----KILSYLDTDFLSKNNVSVGNGADEI 88 (335)
T ss_dssp CSEEESSCCCSSCCCHHHHHHHHHTCCGGGGGSCC------C-SSCHHHHH----HHHHHHTCSSCCGGGEEEESSHHHH
T ss_pred cceECCCCCCCCCCCHHHHHHHHHHhhhhhhhcCC------C-CchHHHHH----HHHHHcCCCCCCHHHEEEcCChHHH
Confidence 45778777764 4566888887766211111222 1 12345555 7777887 54 566666689999
Q ss_pred HHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 102 NQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 102 ~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
+..++.++ ||+|++. +.++ .....+...|. +++.++.++++.+|++++ .++++++++.++|| .
T Consensus 89 l~~~~~~~---gd~Vl~~-p~y~---~~~~~~~~~g~--~~~~v~~~~~~~~d~~~l------~~~~~v~l~~p~nptG~ 153 (335)
T 1uu1_A 89 IYVMMLMF---DRSVFFP-PTYS---CYRIFAKAVGA--KFLEVPLTKDLRIPEVNV------GEGDVVFIPNPNNPTGH 153 (335)
T ss_dssp HHHHHHHS---SEEEECS-SSCH---HHHHHHHHHTC--EEEECCCCTTSCCCCCCC------CTTEEEEEESSCTTTCC
T ss_pred HHHHHHHh---CCcEEEC-CCcH---HHHHHHHHcCC--eEEEeccCCCCCCCHHHc------CCCCEEEEeCCCCCCCC
Confidence 99999998 8999955 4443 34444555666 556667766677888776 34677775565666 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe---eEEEEechhHHHHhhccC
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG---GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G---G~iv~~~~l~~~l~~~~~ 254 (1342)
..+.++|.++++..| ++|+||+|+.+.. ......++ ..+++++|+||++ |+.| ||+++++++++.+.....
T Consensus 154 ~~~~~~l~~l~~~~~-~li~De~~~~~~~--~~~~~~~~~~~~~i~~~s~sK~~-g~~G~r~G~~~~~~~~~~~l~~~~~ 229 (335)
T 1uu1_A 154 VFEREEIERILKTGA-FVALDEAYYEFHG--ESYVDFLKKYENLAVIRTFSKAF-SLAAQRVGYVVASEKFIDAYNRVRL 229 (335)
T ss_dssp CCCHHHHHHHHHTTC-EEEEECTTHHHHC--CCCGGGGGTCSSEEEEEESTTTT-TCGGGCCEEEEECHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHhCC-EEEEECcchhhcc--hhHHHHhhhCCCEEEEecchhhc-CCcccCeEEEEeCHHHHHHHHHhcC
Confidence 458999999999889 9999999975332 11111111 2468899999999 6566 999999999888876543
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
.+ +++.+.+.++..++.. . ++.++..+++.++++++.+.|.+.|+.+. +..++++|+.++. ....++...++
T Consensus 230 ~~---~~~~~~~~~~~~~l~~-~-~~~~~~~~~~~~~~~~l~~~L~~~g~~~~--~~~~~~~~~~~~~-~~~~~~~~~l~ 301 (335)
T 1uu1_A 230 PF---NVSYVSQMFAKVALDH-R-EIFEERTKFIVEERERMKSALREMGYRIT--DSRGNFVFVFMEK-EEKERLLEHLR 301 (335)
T ss_dssp TT---CSCHHHHHHHHHHHHT-H-HHHHHHHHHHHHHHHHHHHHHHHHTCCBC--CCCSSEEEEECCT-HHHHHHHHHHH
T ss_pred CC---CcCHHHHHHHHHHhCC-H-HHHHHHHHHHHHHHHHHHHHHHHCCcEEc--CCCCeEEEEECCC-CCHHHHHHHHH
Confidence 33 3445555555544433 2 36777888999999999999988777653 3456788988865 22345666666
Q ss_pred HHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+ +||.+.+. .+++|++++.
T Consensus 302 ~-~gi~v~~~-----------~~~iRis~~~ 320 (335)
T 1uu1_A 302 T-KNVAVRSF-----------REGVRITIGK 320 (335)
T ss_dssp H-HTEEEEEE-----------TTEEEEECCC
T ss_pred H-CCEEEEEC-----------CCeEEEEeCC
Confidence 5 59999871 3469999853
No 157
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6
Probab=99.77 E-value=1.4e-17 Score=204.52 Aligned_cols=289 Identities=11% Similarity=0.034 Sum_probs=193.8
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCC----------ceEecCCHHHHHHHHHHHcc-------------------CCCCE
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEA----------ANVQPHSGSQANQAVFFSVL-------------------NPGDT 115 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~----------~vi~~~sGs~A~~~al~al~-------------------~pGD~ 115 (1342)
|...+...++|+++.+++++++|.+. ..++++|||+|+..++.+.. .|++.
T Consensus 105 ~~~~p~~~~lE~~v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~ 184 (475)
T 3k40_A 105 WIASPACTELEVVMMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLV 184 (475)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEE
T ss_pred ccCCcHHHHHHHHHHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeE
Confidence 55678888999999999999999883 34566699999998888762 13467
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcC-----CeEEEEcC-CCCC-cccCHHHHHH
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNK-----PKLIIAGA-SAYS-QYIDFERFYH 188 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~-----~~liv~~~-s~~~-~~~~l~~I~~ 188 (1342)
|+++. ..|.+....+...|. +++.+++++++ +|+++|++++.+.+ +.+++++. ++.. ...|+++|++
T Consensus 185 vi~s~---~~H~s~~~~~~~~g~--~~~~v~~d~~~-~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~l~~I~~ 258 (475)
T 3k40_A 185 GYCSD---QAHSSVERAGLLGGV--KLRSVQSENHR-MRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDYLDECGP 258 (475)
T ss_dssp EEEET---TSCHHHHHHHHHHTC--EEEEECCBTTB-CCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred EEECC---CchHHHHHHHHHcCC--ceEEEECCCCC-cCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCCHHHHHH
Confidence 88666 445555666666677 55556777788 99999999997642 44444443 3333 5569999999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCCC---CCCCcEEEecCCccCCCCCe-eEEEEech-hH-HHHhhccCCccc----
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPNP---VPFADFITSTTHKSLRGPRG-GFILMKKK-YK-KIINSAVFPGIQ---- 258 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~~---l~~~Divv~S~sK~l~gp~G-G~iv~~~~-l~-~~l~~~~~~~~~---- 258 (1342)
+|++||+|+++|+||+.+.+....+... +..+|++++++|||+++|.| |+++.++. .. +.+.. ...+..
T Consensus 259 la~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~g~g~l~~~~~~~l~~~~~~-~~~yl~~~~~ 337 (475)
T 3k40_A 259 VGNKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNFDCSAMWLKDPSWVVNAFNV-DPLYLKHDMQ 337 (475)
T ss_dssp HHHHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESSGGGC-----------------
T ss_pred HHHHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCCceEEEEEeCHHHHHHHhcC-CccccCCCcC
Confidence 9999999999999998765533222111 22469999999999988888 77777653 22 22211 011110
Q ss_pred -----------cCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCC-C
Q psy13354 259 -----------GGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKK-I 325 (1342)
Q Consensus 259 -----------~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~-~ 325 (1342)
.++......++..++.....++++++.++..++++++.+.|.+. |+++..+ +..+++++.+++.. .
T Consensus 338 ~~~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~g~~l~~~-~~~~iv~f~~~~~~~~ 416 (475)
T 3k40_A 338 GSAPDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVADSRFELAAE-INMGLVCFRLKGSNER 416 (475)
T ss_dssp -----------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTEEESSC-CBTTEEEEEESSCHHH
T ss_pred CCCCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CceEEEEEEeCCchHH
Confidence 11111123344445554455578888999999999999999996 8888653 45678888876432 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.++...+.++.++++.+..+. +...+|++++..++
T Consensus 417 ~~~l~~~L~~~g~~~~~~~~~~-------g~~~lR~~~~~~~t 452 (475)
T 3k40_A 417 NEALLKRINGRGHIHLVPAKIK-------DVYFLRMAICSRFT 452 (475)
T ss_dssp HHHHHHHHHHHTSCBCEEEEET-------TEEEEEEECCCTTC
T ss_pred HHHHHHHHHhCCcEEEEeeEEC-------CEEEEEEEeCCCCC
Confidence 4567777777755565543222 14579999876544
No 158
>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}
Probab=99.77 E-value=9.1e-18 Score=202.59 Aligned_cols=331 Identities=12% Similarity=-0.005 Sum_probs=194.4
Q ss_pred cCceeeeecCCCCcHHHHHHHhHHHHhccccCC--CCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHH
Q psy13354 27 NNNIELIASENYTSLAVMEAQGTLLTNKYAEGY--PGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQA 101 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~--~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A 101 (1342)
.+.+.|..+.+...+.+.+++.+++......+. .....|+...+..++++++++++.+.+|.. +.+++++||++|
T Consensus 31 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~a 110 (417)
T 3g7q_A 31 PGAIMLGGGNPAHIPAMQDYFQTLLTDMVESGKAADALCNYDGPQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSA 110 (417)
T ss_dssp -CCEECSCCCCCCCHHHHHHHHHHHHHHHHHTHHHHHHHSTTCTTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHH
T ss_pred CCceEecCcCCCCCChHHHHHHHHHHHHhhCCcccceeeccCCCCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHH
Confidence 456888887766655544444443322111000 000124455667789998888887776643 556666699999
Q ss_pred HHHHHHHccCCCC-----EEEEe-eccCCccchhhHHh-hhCCceeEEEEecCC-CCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 102 NQAVFFSVLNPGD-----TIMGM-SLQEGGHLTHGMML-NMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 102 ~~~al~al~~pGD-----~Vlv~-~~~~~~~~s~~~~~-~~~g~~~~~v~~~~~-~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
+..++.+++.+|| +|+++ .+.++++....... ...+....+..++.+ .++.+|++.++ +.+ ++++++++
T Consensus 111 l~~~~~~l~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~--~~~-~~~~v~~~ 187 (417)
T 3g7q_A 111 FFYLFNLFAGRRADGSTKKVLFPLAPEYIGYADSGLEDDLFVSARPNIELLPEGQFKYHVDFEHLH--IGE-ETGMICVS 187 (417)
T ss_dssp HHHHHHHHSBC----CCBEEEESSCCCHHHHHC-----CCEEECCCEEEEEGGGEEEEECCGGGCC--CCT-TEEEEEEE
T ss_pred HHHHHHHHcCCCccCCcceEEEeCCCccccchhhccchhhhccccCcccccCCcccccccCHHHhc--ccc-CceEEEEC
Confidence 9999999999987 88875 55554432222111 112233345544543 24567888887 333 45666666
Q ss_pred CCCCC--cccC---HHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCCCCCCCcEEEecCCccCCCCCe---eEEEEec
Q psy13354 174 ASAYS--QYID---FERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPNPVPFADFITSTTHKSLRGPRG---GFILMKK 243 (1342)
Q Consensus 174 ~s~~~--~~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~~~ 243 (1342)
+++|| ...+ +++|+++|++||++||+|++|+....... .........+++++|+||+ ++.| ||+++++
T Consensus 188 ~p~NptG~~~~~~~~~~l~~~a~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~--~~~G~r~G~~~~~~ 265 (417)
T 3g7q_A 188 RPTNPTGNVITDEELMKLDRLANQHNIPLVIDNAYGVPFPGIIFSEARPLWNPNIILCMSLSKL--GLPGSRCGIIIAND 265 (417)
T ss_dssp SSCTTTCCCCCHHHHHHHHHHHHHTTCCEEEECTTCTTTTCCBCSCCCCCCCTTEEEEEESGGG--TCTTSCCEEEECCH
T ss_pred CCCCCCCCccCHHHHHHHHHHHHHcCCEEEEeCCCccccccccccccccCCCCCEEEEEechhc--cCCCcceEEEEeCH
Confidence 66665 2224 99999999999999999999975321100 0001112357889999994 3444 9999999
Q ss_pred hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhcc--chHHH-HHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEE
Q psy13354 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK--PDFKI-YQKQVVKNAKILSKILDQR----GIRIVSGGTKSHII 316 (1342)
Q Consensus 244 ~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~--~~~~~-~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v 316 (1342)
++++.+......+.++++ ...+.++... .+... ....+ ..+++.++++.+.+.|.+. ++.+.. +..++++
T Consensus 266 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~-~~~g~~~ 342 (417)
T 3g7q_A 266 KTITAIANMNGIISLAPG-GMGPAMMCEM-IKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEERCLIHK-PEGAIFL 342 (417)
T ss_dssp HHHHHHHHHHHHHCCCCC-SHHHHHHHHH-HHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTTTCEEEC-CCBSSEE
T ss_pred HHHHHHHHhhcceeeCCC-cHHHHHHHHH-HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCceeeC-CCcceEE
Confidence 998888764433333322 2333333333 33221 11222 4566777888888887762 566643 5678899
Q ss_pred EEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCc-c--ccccccccccc
Q psy13354 317 LVDLRNKKITGKIAESILESANIICNKNSIPNDPEKP-Y--FTSGIRLGSSA 365 (1342)
Q Consensus 317 ~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~-~--~~~~lRi~~~~ 365 (1342)
|+.++....+.+.+...+.++||.+.++..+...... + ..+++|++++.
T Consensus 343 ~~~~~~~~~~~~~l~~~l~~~gi~v~~g~~f~~~~~~~~~~~~~~iRis~~~ 394 (417)
T 3g7q_A 343 WLWFKDLPITTELLYQRLKARGVLMVPGHYFFPGLDKPWPHTHQCMRMNYVP 394 (417)
T ss_dssp EEECTTCSSCHHHHHHHHHHTTEECEEGGGGCTTBSSCCGGGGGEEEEESCS
T ss_pred EEEcCCCCCCHHHHHHHHHHCCEEEECchhhCCCCccccccCCCeEEEEecC
Confidence 9999864334444444446679999987544332110 0 13579999875
No 159
>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*
Probab=99.77 E-value=4e-17 Score=197.28 Aligned_cols=292 Identities=15% Similarity=0.128 Sum_probs=187.3
Q ss_pred cCCCCcHHHHHHHhHHHHhccccC-CCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-cCC
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEG-YPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV-LNP 112 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g-~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al-~~p 112 (1342)
..+.+++.+++++.+.+... ..+ ++ ...+. .++.+++++.+++++|.+++++++ ||++|+..++.++ +++
T Consensus 10 ~~~~~~~~~~~a~~~~~~~~-~~~~~~--~~~g~----~~l~~~l~~~la~~~g~~~~i~~~-~gt~al~~~~~~~~~~~ 81 (418)
T 2c81_A 10 EWPQHSDRTRRKIEEVFQSN-RWAISG--YWTGE----ESMERKFAKAFADFNGVPYCVPTT-SGSTALMLALEALGIGE 81 (418)
T ss_dssp CSSCCCHHHHHHHHHHHHHT-CCSTTS--BCCSS----CCHHHHHHHHHHHHHTCSEEEEES-CHHHHHHHHHHHTTCCT
T ss_pred CCCCCCHHHHHHHHHHHhcC-CccccC--cccCC----HHHHHHHHHHHHHHhCCCcEEEeC-CHHHHHHHHHHHcCCCC
Confidence 44567888999998888542 111 11 11122 234455666999999998665555 8999999999999 899
Q ss_pred CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHHHHHHH
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAK 191 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I~~la~ 191 (1342)
||+|+++...|++ ....+...|. +++.++.++ ++.+|++++++.+++ ++++|++++ ..+...++++|.++|+
T Consensus 82 gd~Vl~~~~~~~~---~~~~~~~~g~--~~~~~~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~G~~~~~~~i~~~~~ 154 (418)
T 2c81_A 82 GDEVIVPSLTWIA---TATAVLNVNA--LPVFVDVEADTYCIDPQLIKSAITD-KTKAIIPVH-LFGSMANMDEINEIAQ 154 (418)
T ss_dssp TCEEEEESSSCTH---HHHHHHHTTC--EEEEECBCTTTCSBCHHHHGGGCCT-TEEEECCBC-CTTCCCCHHHHHHHHH
T ss_pred cCEEEECCCccHh---HHHHHHHcCC--EEEEEecCCCCCCcCHHHHHHhhCC-CCeEEEEeC-CcCCcccHHHHHHHHH
Confidence 9999987755544 4445566677 455556664 788999999998865 456666543 2335569999999999
Q ss_pred HcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecC--CccCCCCCeeEEEEe-chhHHHHhhccCCcc-----------
Q psy13354 192 NINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTT--HKSLRGPRGGFILMK-KKYKKIINSAVFPGI----------- 257 (1342)
Q Consensus 192 ~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~--sK~l~gp~GG~iv~~-~~l~~~l~~~~~~~~----------- 257 (1342)
+||++||+|++|+.+....+.....+ .|+++.|| ||+++++.||+++++ +++++.+........
T Consensus 155 ~~~~~li~D~a~~~~~~~~~~~~~~~--~~~~~~s~s~~K~~~~g~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 232 (418)
T 2c81_A 155 EHNLFVIEDCAQSHGSVWNNQRAGTI--GDIGAFSCQQGKVLTAGEGGIIVTKNPRLFELIQQLRADSRVYCDDSSELMH 232 (418)
T ss_dssp HTTCEEEEECTTCTTCEETTEETTSS--SSEEEEECCTTSSSCSSSCEEEEESCHHHHHHHHHHHBTTEEECSCGGGCCT
T ss_pred HCCCEEEEECcccccCccCCEecccc--cceEEEeccCCcccCCCCeEEEEECCHHHHHHHHHHHHhCcccccccccccc
Confidence 99999999999988753222212222 36777777 999944355999985 677666653221110
Q ss_pred -cc------------CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC----C-eEEEE
Q psy13354 258 -QG------------GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK----S-HIILV 318 (1342)
Q Consensus 258 -~~------------~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~----~-~~v~i 318 (1342)
+. ....+..+++... .+ +++++..++..++++++.+.|.+. |+++...+.+ . +++.+
T Consensus 233 ~~~~~~~~~~~~g~~~~~~~~~aa~~~~---~l-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~~ 308 (418)
T 2c81_A 233 GDMQLVKKGDIQGSNYCLSEFQSAILLD---QL-QELDDKNAIREKNAMFLNDALSKIDGIKVMKRPPQVSRQTYYGYVF 308 (418)
T ss_dssp TCBSEEECCSSCCCBCCCCHHHHHHHHH---HH-TTHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCTTEEECCCSEEEE
T ss_pred chhhccccccccCcCCCcCHHHHHHHHH---HH-HHHHHHHHHHHHHHHHHHHHhccCCCcccCCCCCCCcccccEEEEE
Confidence 10 0012222222211 12 256677888888999999999886 7877533332 2 24446
Q ss_pred EccC----CCCCHHHHHHHHHHCCce---eeeccCC
Q psy13354 319 DLRN----KKITGKIAESILESANII---CNKNSIP 347 (1342)
Q Consensus 319 ~~~~----~~~~~~~~~~ll~~~GI~---v~~~~~p 347 (1342)
.+++ .....++...+.+++||. +.+++.|
T Consensus 309 ~~~~~~~~~~~~~~l~~~L~~~~gI~~~~v~~~~~p 344 (418)
T 2c81_A 309 RFDPVKFGGLNADQFCEILREKLNMGTFYLHPPYLP 344 (418)
T ss_dssp EECGGGTTTCCHHHHHHHHHHHHTCCTTTEECCCCC
T ss_pred EEccccccccCHHHHHHHHHHcCCCCcccccccccc
Confidence 6653 222344555555444999 8876544
No 160
>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}
Probab=99.77 E-value=1.3e-17 Score=201.81 Aligned_cols=340 Identities=15% Similarity=0.094 Sum_probs=208.0
Q ss_pred ccccccchHHHHHHHHHHHhccCceeeeecCCC-----CcHHHHHHHh--HHHHhccccCCCCCCcc-CCcchHHHHHHH
Q psy13354 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENY-----TSLAVMEAQG--TLLTNKYAEGYPGKRYY-GGCKFIDLIEKI 77 (1342)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~-----l~~~v~eal~--~~l~~~~~~g~~~~~~~-~~~~~~~~Le~~ 77 (1342)
+++....+.++..+.....+ ...++|..+... .++.+.+++. +.+. . +. ....| +...+..++++
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~-~~~i~l~~g~p~~~~~~~~~~v~~a~~~~~~~~-~---~~-~~~~Yp~~~~g~~~lr~- 77 (423)
T 3ez1_A 5 EASRPALDLARQAYEAFKAR-GLNLNMQRGQPADADFDLSNGLLTVLGAEDVRM-D---GL-DLRNYPGGVAGLPSARA- 77 (423)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-TCCEESCCCCCCHHHHHTTGGGGGSCCGGGCEE-T---TE-ETTSSCSCTTCCHHHHH-
T ss_pred HHHHHHHHHHHHHHHHhhcC-CceEecCCCCCChHhCCCcHHHHHHHhhhHHhh-c---ch-hhhCCCCCCCChHHHHH-
Confidence 35555666666666554333 355777776544 2334666654 2221 1 10 01223 34444556666
Q ss_pred HHHHHHHHhCCC-CceEecCCHHHHHH--HHHHHccC--C---------CCEEEEeeccCCccchhhHHhhhCCceeEEE
Q psy13354 78 AINRLKKIFNAE-AANVQPHSGSQANQ--AVFFSVLN--P---------GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSI 143 (1342)
Q Consensus 78 ~~~~la~~~g~~-~~vi~~~sGs~A~~--~al~al~~--p---------GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v 143 (1342)
.++++++.+ +.+++++||++++. .++.+++. | ||+|++..+.+ ......+...|..+ +
T Consensus 78 ---~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~gd~Vlv~~p~y---~~~~~~~~~~g~~~--~ 149 (423)
T 3ez1_A 78 ---LFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQTPKMIVTVPGY---DRHFLLLQTLGFEL--L 149 (423)
T ss_dssp ---HHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGCCEEEEEESCC---HHHHHHHHHHTCEE--E
T ss_pred ---HHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCCCEEEEcCCCc---HHHHHHHHHcCCEE--E
Confidence 788888876 56667768888997 88888877 8 59999777544 44444556667744 4
Q ss_pred EecCCCCCCCCHHHHHHHHH-hcCCeEEEEc-CCCCC--ccc---CHHHHHHHH-HHcCCEEEEEcccchhhhhc-CC--
Q psy13354 144 CYGLNKKEKIDYKKVEYLAK-KNKPKLIIAG-ASAYS--QYI---DFERFYHIA-KNINSYFMVDMAHYAGLIAA-GE-- 212 (1342)
Q Consensus 144 ~~~~~~~~~id~e~Le~~i~-~~~~~liv~~-~s~~~--~~~---~l~~I~~la-~~~gi~LIvDea~~~g~~~~-~~-- 212 (1342)
+++.++++ +|+++++++++ ..++++|++. .++|| ... ++++|+++| ++||++||+||+|....+.. +.
T Consensus 150 ~v~~~~~g-~d~~~l~~~l~~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~a~~~~~~~li~De~y~~~~~~~~~~~~ 228 (423)
T 3ez1_A 150 TVDMQSDG-PDVDAVERLAGTDPSVKGILFVPTYSNPGGETISLEKARRLAGLQAAAPDFTIFADDAYRVHHLVEEDRAE 228 (423)
T ss_dssp EEEEETTE-ECHHHHHHHHHSCTTEEEEEECSSSCTTTCCCCCHHHHHHHHTCCCSSTTCEEEEECTTSSCBCCSSSCCC
T ss_pred eccCCCCC-CCHHHHHHHHhhCCCceEEEECCCCCCCCCcCCCHHHHHHHHHHHHhccCCEEEEECCcchhhcCCCCCCC
Confidence 44554444 89999999996 3456666543 34555 222 455999999 99999999999998544433 11
Q ss_pred CCCC--------CCCCcEEEecCCccCC-CCCeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH---hccch
Q psy13354 213 YPNP--------VPFADFITSTTHKSLR-GPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE---VLKPD 280 (1342)
Q Consensus 213 ~~~~--------l~~~Divv~S~sK~l~-gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~---~l~~~ 280 (1342)
..+. ....+++++|+||++. |...||+++++++++.+........+ +++...+.++..++.. ....+
T Consensus 229 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~r~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~a~~~~l~~~~~~~~~~ 307 (423)
T 3ez1_A 229 PVNFVVLARDAGYPDRAFVFASTSKITFAGAGLGFVASSEDNIRWLSKYLGAQSI-GPNKVEQARHVKFLTEYPGGLEGL 307 (423)
T ss_dssp CCCHHHHHHHHTCTTSEEEEEESTTTSCSSSSCEEEEECHHHHHHHHHHHHHSCS-CCCHHHHHHHHHHHHHSTTHHHHH
T ss_pred CcchhhhhhccCCCCeEEEEeCchhhccCCcceEEEEeCHHHHHHHHHHHhhhcc-CCCHHHHHHHHHHHHhccchHHHH
Confidence 1111 1124688999999752 22339999999988888764333323 2334455555444444 11234
Q ss_pred HHHHHHHHHHHHHHHHHHHHh----CC--cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee-ccCCCCCCCc
Q psy13354 281 FKIYQKQVVKNAKILSKILDQ----RG--IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK-NSIPNDPEKP 353 (1342)
Q Consensus 281 ~~~~~~~l~~~a~~l~~~L~~----~g--~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~-~~~p~~~~~~ 353 (1342)
+++..+.+.++++.+.+.|.+ .| +.+. .+..++++|+.++.. +.+.+..++.++||.+.+ +..+.... .
T Consensus 308 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~-~p~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~~g~~~~~~~-~ 383 (423)
T 3ez1_A 308 MRDHAAIIAPKFRAVDEVLRAELGEGGEYATWT-LPKGGYFISLDTAEP--VADRVVKLAEAAGVSLTPAGATYPAGQ-D 383 (423)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEEC-CCSBSSCEEEEESSS--CHHHHHHHHHHTTEECCCTTTTSSTTC-C
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEe-CCCccEEEEEECCCC--cHHHHHHHHHHCCcEEecCcccccCCC-C
Confidence 555566666666666666654 44 5543 356788999998764 355666667778999998 43333211 1
Q ss_pred ccccccccccccc
Q psy13354 354 YFTSGIRLGSSAI 366 (1342)
Q Consensus 354 ~~~~~lRi~~~~~ 366 (1342)
...+++|++++..
T Consensus 384 ~~~~~iRis~~~~ 396 (423)
T 3ez1_A 384 PHNRNLRLAPTRP 396 (423)
T ss_dssp SSSCEEEECCSSS
T ss_pred CCCCeEEEEcCCC
Confidence 1246799999754
No 161
>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}
Probab=99.76 E-value=8.6e-18 Score=199.68 Aligned_cols=284 Identities=15% Similarity=0.126 Sum_probs=185.1
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS 108 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a 108 (1342)
.+.+..+.+.+++ +.+++.+.+... .|...+...++++ .+++++|.+++++++ ||++|+..++.+
T Consensus 8 ~~~l~~~~~~~~~-~~~~~~~~~~~~---------~~~~~~~~~~l~~----~la~~~~~~~~~~~~-~gt~a~~~~~~~ 72 (374)
T 3uwc_A 8 YSYLERQFADIEP-YLNDLREFIKTA---------DFTLGAELEKFEK----RFAALHNAPHAIGVG-TGTDALAMSFKM 72 (374)
T ss_dssp SCCHHHHTSSCHH-HHHHHHHHHHHT---------CCSSCHHHHHHHH----HHHHHTTCSEEEEES-CHHHHHHHHHHH
T ss_pred eeccccCCCCchH-HHHHHHHHHHcC---------CcccChhHHHHHH----HHHHHhCCCcEEEeC-CHHHHHHHHHHH
Confidence 4556667777777 888887776421 1333444455555 889999988665555 999999999999
Q ss_pred c-cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHH
Q psy13354 109 V-LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERF 186 (1342)
Q Consensus 109 l-~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I 186 (1342)
+ +.+||+|+++...|+ +....+...|. +++.++.++++.+|++++++.+++ ++++++ +.|+. ...++++|
T Consensus 73 ~~~~~gd~v~~~~~~~~---~~~~~~~~~g~--~~~~~~~~~~~~~d~~~l~~~~~~-~~~~v~--~~n~~G~~~~~~~i 144 (374)
T 3uwc_A 73 LNIGAGDEVITCANTFI---ASVGAIVQAGA--TPVLVDSENGYVIDPEKIEAAITD-KTKAIM--PVHYTGNIADMPAL 144 (374)
T ss_dssp TTCCTTCEEEEESSSCH---HHHHHHHHTTC--EEEEECBCTTSSBCGGGTGGGCCT-TEEEEC--CBCGGGCCCCHHHH
T ss_pred cCCCCCCEEEECCCccH---HHHHHHHHcCC--EEEEEecCCCCCcCHHHHHHhCCC-CceEEE--EeCCcCCcCCHHHH
Confidence 9 999999998775554 44455566777 455556667788999999988865 455555 33333 45699999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCC-CCeeEEEEec-hhHHHHhhccCCc------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRG-PRGGFILMKK-KYKKIINSAVFPG------ 256 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~g-p~GG~iv~~~-~l~~~l~~~~~~~------ 256 (1342)
.++|++||++||+|++|+.|.......... ..|++++|+| |++++ +.||++++++ ++.+.+.......
T Consensus 145 ~~~~~~~~~~li~D~~~~~g~~~~~~~~~~--~~d~~~~s~~~~K~l~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (374)
T 3uwc_A 145 AKIAKKHNLHIVEDACQTILGRINDKFVGS--WGQFACFSLHPLKNLNVWSDAGVIITHSDEYAEKLRLYRNHGLINRDV 222 (374)
T ss_dssp HHHHHHTTCEEEEECTTCTTCEETTEETTS--SSSEEEEECSSSSSSCCSSCCEEEEESCHHHHHHHHHHTBTTEEETTE
T ss_pred HHHHHHcCCEEEEeCCCccCceeCCeeccc--cccEEEEeCCCCCcCCccceeEEEEeCCHHHHHHHHHHHhcCccccCc
Confidence 999999999999999998775433222222 2599999977 99955 3468888776 5655555432111
Q ss_pred ----cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--cEEeeCCCCC----eEEEEEccCCCCC
Q psy13354 257 ----IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--IRIVSGGTKS----HIILVDLRNKKIT 326 (1342)
Q Consensus 257 ----~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~~~~~~~~~~----~~v~i~~~~~~~~ 326 (1342)
..+....+..+++.... . +.+++..++..++++++.+.|.+.+ +.+...+... +.+++... +
T Consensus 223 ~~~~~~~~~~~~~~aa~~~~~---~-~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~ 294 (374)
T 3uwc_A 223 CVEYGINCRMDTIQAVIANRL---M-NQLETITEKRRGIAHLYDQSFVDLSEFIDVPVRREGVYHVFHIYVLRVK----Y 294 (374)
T ss_dssp ESSCCCBCBCCHHHHHHHHHH---G-GGHHHHHHHHHHHHHHHHHHTGGGTTTEECCCCCTTEECCCSSEEEEET----T
T ss_pred cccccccCCCCHHHHHHHHHH---H-HHHHHHHHHHHHHHHHHHHHhccCCCeEEeccCCCCCceeeEEEEEEcC----C
Confidence 11111223333332221 2 3566778888999999999998875 6553222211 12223322 3
Q ss_pred HHHHHHHHHHCCceeeecc
Q psy13354 327 GKIAESILESANIICNKNS 345 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~ 345 (1342)
.+.+...|.++||.+.+.+
T Consensus 295 ~~~l~~~L~~~gi~v~~~~ 313 (374)
T 3uwc_A 295 RDQLFQYLKDNGIEVKIHY 313 (374)
T ss_dssp HHHHHHHHHHTTBCCBCSC
T ss_pred HHHHHHHHHHCCCccccCC
Confidence 3444455555699998765
No 162
>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}
Probab=99.76 E-value=2.1e-17 Score=200.43 Aligned_cols=288 Identities=15% Similarity=0.028 Sum_probs=184.9
Q ss_pred ccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH--HHHHHHccC--C----------CCEEEEeeccCCccch
Q psy13354 64 YYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN--QAVFFSVLN--P----------GDTIMGMSLQEGGHLT 128 (1342)
Q Consensus 64 ~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~--~~al~al~~--p----------GD~Vlv~~~~~~~~~s 128 (1342)
.|+...+..++++ .++++++.+ +.+++++|+++++ ..++.+++. | ||+|++..+.+ ..
T Consensus 73 ~Y~~~~g~~~lr~----~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~gd~V~v~~p~y---~~ 145 (427)
T 3ppl_A 73 NYGGLDGIVDIRQ----IWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEETVKWICPVPGY---DR 145 (427)
T ss_dssp SSCCSSCCHHHHH----HHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCC---HH
T ss_pred CCCCCCCcHHHHH----HHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCCCEEEEcCCCc---HH
Confidence 3444555667777 677777876 5666676888899 478888876 6 89999777544 44
Q ss_pred hhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEc-CCCCC--cccC---HHHHHHHH-HHcCCEEEEEc
Q psy13354 129 HGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAG-ASAYS--QYID---FERFYHIA-KNINSYFMVDM 201 (1342)
Q Consensus 129 ~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~-~s~~~--~~~~---l~~I~~la-~~~gi~LIvDe 201 (1342)
+...+...|..+ ++++.++++ +|++.++++++..+++++++. .++|| ...+ +++|+++| ++||++||+|+
T Consensus 146 ~~~~~~~~g~~~--~~v~~~~~g-~d~~~l~~~l~~~~~~~v~~~p~~~NPtG~~~~~~~~~~l~~~a~~~~~~~ii~De 222 (427)
T 3ppl_A 146 HFSITERFGFEM--ISVPMNEDG-PDMDAVEELVKNPQVKGMWVVPVFSNPTGFTVTEDVAKRLSAMETAAPDFRVVWDN 222 (427)
T ss_dssp HHHHHHHTTCEE--EEEEEETTE-ECHHHHHHHTTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEEC
T ss_pred HHHHHHHcCCEE--EEeCCCCCC-CCHHHHHHHHhcCCCeEEEECCCCCCCCCccCCHHHHHHHHHHHhhcCCCEEEEEC
Confidence 455566777744 444555555 899999999864566777755 34555 2224 55999999 99999999999
Q ss_pred ccchhhhhcCCCC--CC--------CCCCcEEEecCCccCCCC-CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHH
Q psy13354 202 AHYAGLIAAGEYP--NP--------VPFADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKA 270 (1342)
Q Consensus 202 a~~~g~~~~~~~~--~~--------l~~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa 270 (1342)
+|+...+...... +. ....+++++||||++.++ ..||+++++++++.+........++ ++...+.++.
T Consensus 223 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~r~G~~~~~~~l~~~~~~~~~~~~~~-~~~~~q~~~~ 301 (427)
T 3ppl_A 223 AYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGAGVSFFLTSAENRKWYTGHAGIRGIG-PNKVNQLAHA 301 (427)
T ss_dssp TTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTSSCEEEECCHHHHHHHHHHHHHHCSC-CCHHHHHHHH
T ss_pred CCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCccEEEEEcCHHHHHHHHHHhhcccCC-CCHHHHHHHH
Confidence 9976544332111 11 112468899999985222 2299999999888876643322222 3344444444
Q ss_pred HHHHH--hccchHHHHHHHHHHHHHHHHHHHHh----C-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 271 VAFKE--VLKPDFKIYQKQVVKNAKILSKILDQ----R-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 271 ~al~~--~l~~~~~~~~~~l~~~a~~l~~~L~~----~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
.++.. ....++++.++.+.++++.+.+.|.+ . ++.+. .+.+++++|+.++.. +.+.+..++.++||.+.+
T Consensus 302 ~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~-~p~~g~~~~~~~~~~--~~~~~~~~l~~~gv~v~~ 378 (427)
T 3ppl_A 302 RYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWT-VPAGGYFISLDVVPG--TASRVAELAKEAGIALTG 378 (427)
T ss_dssp HHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEEC-CCSBSSCEEEECSTT--CHHHHHHHHHHTTEECCC
T ss_pred HHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEe-CCCccEEEEEECCcc--hHHHHHHHHHHCCCEEec
Confidence 44332 12235666677777788877777755 2 35543 356788999999764 234445566677999988
Q ss_pred -ccCCCCCCCcccccccccccccc
Q psy13354 344 -NSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 344 -~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+..+.... ....+++|++++..
T Consensus 379 ~g~~~~~~~-~~~~~~~Ris~~~~ 401 (427)
T 3ppl_A 379 AGSSYPLRQ-DPENKNLRLAPSLP 401 (427)
T ss_dssp TTTTSGGGC-CTTSCEEEECCSSS
T ss_pred CcCcCCCCC-CCCCCeEEEECCCC
Confidence 33332110 01146799999654
No 163
>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*
Probab=99.76 E-value=1.5e-17 Score=199.73 Aligned_cols=311 Identities=12% Similarity=0.079 Sum_probs=193.7
Q ss_pred CceeeeecC--CCCc-----HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC----CCCceE-ec
Q psy13354 28 NNIELIASE--NYTS-----LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN----AEAANV-QP 95 (1342)
Q Consensus 28 ~~i~l~a~~--n~l~-----~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g----~~~~vi-~~ 95 (1342)
+.|++..+. |+.+ +.+.+++.....+.. ...|....+..++++++++++...+| .+++++ .+
T Consensus 29 ~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~------~~~Y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t 102 (401)
T 7aat_A 29 KKMNLGVGAYRDDNGKPYVLNCVRKAEAMIAAKKM------DKEYLPIAGLADFTRASAELALGENSEAFKSGRYVTVQG 102 (401)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHTTC------CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CceeeeeeeEECCCCCEechHHHHHHHHHhccccc------ccCCCCCCCCHHHHHHHHHHhcCCCccccccCceEEEec
Confidence 357777765 3322 236666655543111 12233344456788877777665545 234433 15
Q ss_pred CCHHHHHHHHHHHcc---CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHh--cCCeEE
Q psy13354 96 HSGSQANQAVFFSVL---NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK--NKPKLI 170 (1342)
Q Consensus 96 ~sGs~A~~~al~al~---~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~--~~~~li 170 (1342)
+||++|+..++.++. +|||+|+++.+.++.+ ...+...|..+..+++..++++.+|++.+++.+.+ .+++++
T Consensus 103 ~G~~~al~~~~~~l~~~~~~gd~Vlv~~p~~~~~---~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 179 (401)
T 7aat_A 103 ISGTGSLRVGANFLQRFFKFSRDVYLPKPSWGNH---TPIFRDAGLQLQAYRYYDPKTCSLDFTGAMEDISKIPEKSIIL 179 (401)
T ss_dssp EHHHHHHHHHHHHHHHHCTTCCEEEEEESCCTTH---HHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTSCTTCEEE
T ss_pred CcchHHHHHHHHHHHHhccCCCEEEEcCCCchhH---HHHHHHcCCeeEeeeeeccccCccCHHHHHHHHHhCCCCcEEE
Confidence 489999998887664 8999999887555544 44556667744444432234688999988887764 245777
Q ss_pred EEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCC-----CCCCCcEEEecCCccCCCCCe--
Q psy13354 171 IAGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPN-----PVPFADFITSTTHKSLRGPRG-- 236 (1342)
Q Consensus 171 v~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~-----~l~~~Divv~S~sK~l~gp~G-- 236 (1342)
++++++|| + ..++++|+++|++||+++|+||+|....+... ...+ ......++++|+||++ |+.|
T Consensus 180 ~i~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~-~~~G~R 258 (401)
T 7aat_A 180 LHACAHNPTGVDPRQEQWKELASVVKKRNLLAYFDMAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNM-GLYGER 258 (401)
T ss_dssp EESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTS-CCGGGC
T ss_pred EeCCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEccccccccCCCccccHHHHHHHHhcCCcEEEEecCCccc-ccccCc
Confidence 88777777 2 23689999999999999999999875443210 0000 0112358899999999 7777
Q ss_pred -eEEEE---ech----hHHHHhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhCC
Q psy13354 237 -GFILM---KKK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQRG 303 (1342)
Q Consensus 237 -G~iv~---~~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~g 303 (1342)
||+++ +++ +...+......+.. ++....+.+++.++.+. ..+++++.++++.++++++.+.|.+.|
T Consensus 259 iG~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~ 337 (401)
T 7aat_A 259 AGAFTVICRDAEEAKRVESQLKILIRPMYS-NPPMNGARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG 337 (401)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEEeCCHHHHHHHHHHHHHHHHhccC-CCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 99887 344 33444332222222 23333333333233111 023566778899999999999999876
Q ss_pred ----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 304 ----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 304 ----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+. .+..+++.|+.+ +.+.+..+++++||.+.+ .+|++++..++.
T Consensus 338 ~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~ll~~~gi~v~~--------------~~Ris~~~~~~~ 387 (401)
T 7aat_A 338 SSHNWQHI-TDQIGMFCFTGL-----KPEQVERLTKEFSIYMTK--------------DGRISVAGVASS 387 (401)
T ss_dssp CCSCCHHH-HHCCSSEEECCC-----CHHHHHHHHHHHCEECCT--------------TCEEEGGGCCTT
T ss_pred CCCCCcee-cCCcceEEecCC-----CHHHHHHHHHhCCEeccC--------------CCeEEeccCChh
Confidence 3332 245567777654 357778888888999862 268988876554
No 164
>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Probab=99.76 E-value=6.1e-18 Score=199.39 Aligned_cols=307 Identities=15% Similarity=0.098 Sum_probs=199.7
Q ss_pred ceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 29 NIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 29 ~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
.+.+..+. ...++.+.+++.+.+. .|..+ .+..++.+++++++++++|.+ +.+++++||++|+..++
T Consensus 15 ~i~l~~~~~~~~~~~v~~a~~~~~~-~~~~~----------~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~ 83 (359)
T 1svv_A 15 PYSFVNDYSVGMHPKILDLMARDNM-TQHAG----------YGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIAC 83 (359)
T ss_dssp CEECSCSCSSCCCHHHHHHHHHHTT-CCCCS----------TTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHH
T ss_pred eEEecCCCcCCCCHHHHHHHHHHHh-hcccc----------ccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHH
Confidence 45554443 3456669999888764 22111 112366777888999999976 34666669999999999
Q ss_pred HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc------CCeEEEEcCCCCC-c
Q psy13354 107 FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN------KPKLIIAGASAYS-Q 179 (1342)
Q Consensus 107 ~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~------~~~liv~~~s~~~-~ 179 (1342)
.+++.+||+|++....|+++... ..+...|. +++.++.+ ++.+|++++++.+++. +++++++++++++ .
T Consensus 84 ~~~~~~gd~vl~~~~~~~~~~~~-~~~~~~g~--~~~~v~~~-~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~~ptG~ 159 (359)
T 1svv_A 84 SLALRPWEAVIATQLGHISTHET-GAIEATGH--KVVTAPCP-DGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGT 159 (359)
T ss_dssp HHHCCTTEEEEEETTSHHHHSST-THHHHTTC--CEEEECCT-TSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSC
T ss_pred HHHhCCCCEEEEcccchHHHHHH-HHHhcCCC--eeEEEeCC-CCeecHHHHHHHHHHHHhccCCCceEEEEEcCCCCce
Confidence 99999999999877666554332 12455666 44555554 6889999999999875 2667766666433 3
Q ss_pred ccC---HHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEechhHHHHhh
Q psy13354 180 YID---FERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKKKYKKIINS 251 (1342)
Q Consensus 180 ~~~---l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~ 251 (1342)
..+ +++|+++|++||++||+|++|....++. +.....+ ..+|++++|++|+. ++.| |++++++++++.+..
T Consensus 160 ~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~g-~~~~~g~l~~~~~~~~~~~~ 238 (359)
T 1svv_A 160 QYTKQELEDISASCKEHGLYLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKAG-GMFGEALIILNDALKPNARH 238 (359)
T ss_dssp CCCHHHHHHHHHHHHHHTCEEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTTT-CSSCEEEEECSGGGCTTHHH
T ss_pred ecCHHHHHHHHHHHHHhCCEEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccCC-CCCceEEEEEcccHHHHHHH
Confidence 335 9999999999999999999983221111 1111110 13689999999985 7878 999999887665554
Q ss_pred cc--CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHH
Q psy13354 252 AV--FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKI 329 (1342)
Q Consensus 252 ~~--~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~ 329 (1342)
.. ..+.++.. .+...++. ++ ....++++..+++.++++++.+.|+..|+++.. +.+.+++|+.++ .++
T Consensus 239 ~~~~~~~~~~~~-~~~~~~~~-~~--l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~-~~~~~~~~~~~~-----~~~ 308 (359)
T 1svv_A 239 LIKQRGALMAKG-WLLGIQFE-VL--MKDNLFFELGAHSNKMAAILKAGLEACGIRLAW-PSASNQLFPILE-----NTM 308 (359)
T ss_dssp HHHHTTCCCTTT-HHHHHHHH-HH--TSTTHHHHHHHHHHHHHHHHHHHHHHTTCCBSS-CCSSSEECBEEE-----HHH
T ss_pred HHhcCCcccccc-hhhHHHHH-HH--HhhhhHHHHHHHHHHHHHHHHHHhccCCeEEcc-CCccceEEEEcC-----HHH
Confidence 21 22222211 22222222 22 112356778889999999999999556777643 456778887764 366
Q ss_pred HHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 330 AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 330 ~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
...+++++||.+.+.. +. ..+++|++++..++
T Consensus 309 ~~~l~~~~gi~v~~~~----~~---~~~~iRi~~~~~~~ 340 (359)
T 1svv_A 309 IAELNNDFDMYTVEPL----KD---GTCIMRLCTSWATE 340 (359)
T ss_dssp HHHHTTTEECEEEEEE----TT---TEEEEEEECCTTCC
T ss_pred HHHHHHhcCEEEEecc----cC---CCceEEEEccCcCC
Confidence 6666665599983211 11 14579998776544
No 165
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*
Probab=99.63 E-value=3.6e-20 Score=222.02 Aligned_cols=317 Identities=13% Similarity=0.089 Sum_probs=208.3
Q ss_pred CceeeeecCCCCc--HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CC-CceEecCCHHHHH
Q psy13354 28 NNIELIASENYTS--LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AE-AANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~--~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~-~~vi~~~sGs~A~ 102 (1342)
+.+.+..+++.++ +.+.+++.+.+.. ...+|+ .. ..++++++++++.+.+| .+ +.+++++||++|+
T Consensus 32 ~~i~l~~~~~~~~~~~~v~~a~~~~~~~-~~~~y~------~~--~~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~ 102 (392)
T 3b1d_A 32 QLLPAWIADMDFEVMPEVKQAIHDYAEQ-LVYGYT------YA--SDELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAI 102 (392)
Confidence 4566766664333 3488887777632 111221 11 55788877778777767 32 4555665889999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-C--CCCCCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-K--KEKIDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~--~~~id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
..++.+++.+||+|++..+.++++. ..+...|. +++.++.+ + ++.+|++.+++.+++.++++++++++++|
T Consensus 103 ~~~~~~~~~~gd~vl~~~p~~~~~~---~~~~~~g~--~~~~~~~~~~~g~~~~d~~~l~~~l~~~~~~~v~~~~~~npt 177 (392)
T 3b1d_A 103 SIAIQAFTKEGEAVLINSPVYPPFA---RSVRLNNR--KLVSNSLKEENGLFQIDFEQLENDIVENDVKLYLLCNPHNPG 177 (392)
Confidence 9999999999999997765555443 33344555 44444543 2 35689999999887445666666666655
Q ss_pred ----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC------CCCcEEEecCCccCCCCCe---eEEEEec-h
Q psy13354 179 ----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV------PFADFITSTTHKSLRGPRG---GFILMKK-K 244 (1342)
Q Consensus 179 ----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l------~~~Divv~S~sK~l~gp~G---G~iv~~~-~ 244 (1342)
...++++|+++|++||++||+||+|+.+.+.+..+.... ...+++++|+||++ |..| ||+++++ +
T Consensus 178 G~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~r~G~~~~~~~~ 256 (392)
T 3b1d_A 178 GRVWEREVLEQIGHLCQKHHVILVSDEIHQDLTLFGHEHVSFNTVSPDFKDFALVLSSATKTF-NIAGTKNSYAIIENPT 256 (392)
Confidence 223699999999999999999999986554332211111 12357889999999 5455 9999875 5
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh-C-CcEEeeCCCCCeEEEEEccC
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ-R-GIRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~-~-g~~~~~~~~~~~~v~i~~~~ 322 (1342)
+++.+......+.+++++...+.++..++.. ..+++++.++++.++++++.+.|.+ . ++.+.. +.+++++|++++.
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~-~~~~~~~~i~~~~ 334 (392)
T 3b1d_A 257 LCAQFKHQQLVNNHHEVSSLGYIATETAYRY-GKPWLVALKAVLEENIQFAVEYFAQEAPRLKVMK-PQGTYLIWLDFSD 334 (392)
Confidence 8888876544443333334444444444443 2346777888899999999999987 3 666543 4556677888865
Q ss_pred C-CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 323 K-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 323 ~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
. ....++...+++++||.+.++..++.. ..+++|++++.
T Consensus 335 ~~~~~~~l~~~l~~~~gi~v~~g~~f~~~----~~~~iRi~~~~ 374 (392)
T 3b1d_A 335 YGLTDDALFTLLHDQAKVILNRGSDYGSE----GELHARLNIAA 374 (392)
Confidence 3 234466777766679999987655421 14579999775
No 166
>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}
Probab=99.76 E-value=7e-17 Score=199.82 Aligned_cols=303 Identities=15% Similarity=0.154 Sum_probs=203.1
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccC-----C
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLN-----P 112 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~-----p 112 (1342)
+.+.+++.+++. .+.... ...+...++..++++++.+++++++|.+ ..+++++||++|+..++.++.. +
T Consensus 78 ~~~~~~~~~~~~-~~~~~~--~~~~~~~~~~~~l~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~ 154 (497)
T 3mc6_A 78 DDLIHLQTIAYE-KYCVAN--QLHPDVFPAVRKMESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHR 154 (497)
T ss_dssp HHHHHHHHHHHH-HTSSCB--TTCTTTCHHHHHHHHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHH-HHhhcC--CCCcccChHHHHHHHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 457777777764 332111 1223445677899999999999999987 4666777999999999998864 5
Q ss_pred C---CEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHH
Q psy13354 113 G---DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERF 186 (1342)
Q Consensus 113 G---D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I 186 (1342)
| |+|+++. ++|.+....+...|.. ++.++.++ ++.+|++++++++.+ ++++|++++++++ ...++++|
T Consensus 155 g~~~~~Vi~~~---~~h~~~~~~~~~~G~~--~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~p~nptG~~~~l~~i 228 (497)
T 3mc6_A 155 GITEPEIIAPV---TAHAGFDKAAYYFGMK--LRHVELDPTTYQVDLGKVKKFINK-NTVLLVGSAPNFPHGIADDIEGL 228 (497)
T ss_dssp CCSSCEEEEET---TSCHHHHHHHHHSCCE--EEEECBCTTTCSBCTTTTGGGCCS-SEEEEEEETTCTTTCCCCSCTTT
T ss_pred CCCCceEEEeC---CccHHHHHHHHHcCCe--EEEEecCcccCcCCHHHHHHHHhh-CCEEEEEECCCCCCCcCCCHHHH
Confidence 6 8999766 4555556666777874 45556665 788999999998875 4567777666655 55589999
Q ss_pred HHHHHHcCCEEEEEcccchhhhh----c--CCC--C-CCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC-C
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIA----A--GEY--P-NPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF-P 255 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~----~--~~~--~-~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~-~ 255 (1342)
+++|++||++||+|++|+.+... . +.. . .....+|++++|+||++.++.| |+++++++.......... .
T Consensus 229 ~~la~~~g~~livD~a~~~~~~~f~~~~~~~~~~~~~~~~~g~d~~~~s~~K~l~~~~~~g~~~~~~~~~~~~~~~~~~~ 308 (497)
T 3mc6_A 229 GKIAQKYKLPLHVDSCLGSFIVSFMEKAGYKNLPLLDFRVPGVTSISCDTHKYGFAPKGSSVIMYRNSDLRMHQYYVNPA 308 (497)
T ss_dssp TTHHHHTTCCEEEETTTTHHHHGGGTTTTCCSCCCCSTTSTTCCEEEEETTTTTCCCSSCEEEECSSHHHHTTTSCCBTT
T ss_pred HHHHHHhCCEEEEECcchhhhhhhhhhhcccCCccccccCCCCcEEEECchhhcCCCCCceeEEecCHHHHhhhhccccc
Confidence 99999999999999999855432 0 111 1 1122479999999999867777 999988765544321111 1
Q ss_pred c---------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEeeCCCCCeEEEEEccCCC
Q psy13354 256 G---------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVSGGTKSHIILVDLRNKK 324 (1342)
Q Consensus 256 ~---------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~~~~~~~~v~i~~~~~~ 324 (1342)
+ ..++......+++.+++......+++++.++..++++++.+.|.+. |+++..+ +...++++.... .
T Consensus 309 ~~~~~~~~~~~~g~~~~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~g~~~~~~-~~~~~v~~~~~~-~ 386 (497)
T 3mc6_A 309 WTGGLYGSPTLAGSRPGAIVVGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQENIPDLDIMGN-PRYSVISFSSKT-L 386 (497)
T ss_dssp CTTSCBCCSSSCSSCBHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTTCEECSC-CCSSEEEEECTT-T
T ss_pred ccCCCcCCcCcccCCcchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecC-CCeeEEEEeCCC-C
Confidence 1 1112222234445555554444567888899999999999999995 8888654 344555555442 1
Q ss_pred CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 325 ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 325 ~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
...++...+ .++||.+.....| ..+|++++
T Consensus 387 ~~~~l~~~L-~~~Gi~v~~~~~~---------~~~ri~~~ 416 (497)
T 3mc6_A 387 NIHELSDRL-SKKGWHFNALQKP---------VALHMAFT 416 (497)
T ss_dssp THHHHHHHH-HTTTCBCEECCSS---------CCEEEECC
T ss_pred CHHHHHHHH-HhCCEEEecCCCC---------CeEEEEEe
Confidence 233455555 4559988754322 24788877
No 167
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Probab=99.76 E-value=4.6e-17 Score=201.74 Aligned_cols=294 Identities=17% Similarity=0.131 Sum_probs=191.2
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC---CceEecCCHHHHHHHHHHHccC--------CC-----C-EEEEeeccCCccc
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE---AANVQPHSGSQANQAVFFSVLN--------PG-----D-TIMGMSLQEGGHL 127 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~---~~vi~~~sGs~A~~~al~al~~--------pG-----D-~Vlv~~~~~~~~~ 127 (1342)
|...+...++|+++++++++++|.+ ..+++++|||+|+..++.++.. +| + .|+++.. .|.
T Consensus 124 ~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~---~h~ 200 (504)
T 2okj_A 124 YEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQ---SHY 200 (504)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETT---SCT
T ss_pred hhhChHHHHHHHHHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCc---chH
Confidence 3444667789999999999999986 3456666999999999988742 56 6 6775553 445
Q ss_pred hhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEE
Q psy13354 128 THGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMV 199 (1342)
Q Consensus 128 s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIv 199 (1342)
+....+...|.+. +++.++.+++|.+|+++|++++.+. .+++|+++.++++ ...|+++|+++|++||+|+++
T Consensus 201 s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~l~~I~~la~~~g~~lhv 280 (504)
T 2okj_A 201 SIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEKYNLWLHV 280 (504)
T ss_dssp HHHHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCCHHHHHHHHHHHTCEEEE
T ss_pred HHHHHHHHcCCCcccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCCHHHHHHHHHHcCCEEEE
Confidence 5555555566533 4555677778999999999998763 4667777665554 456999999999999999999
Q ss_pred EcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEec-hhHHHHhhccCCccccCCc------------
Q psy13354 200 DMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKK-KYKKIINSAVFPGIQGGPL------------ 262 (1342)
Q Consensus 200 Dea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~-~l~~~l~~~~~~~~~~~~~------------ 262 (1342)
|++|+.+.+....+...+ ..+|++++++|||+++|.| |++++++ ++.+.......++..+...
T Consensus 281 D~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 360 (504)
T 2okj_A 281 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKA 360 (504)
T ss_dssp EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGS
T ss_pred ehhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCcceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCC
Confidence 999987766432221122 2479999999999977877 9999887 4655433222222211100
Q ss_pred -----HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEee--CCCCCeEEEEEccCC--C--------
Q psy13354 263 -----MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVS--GGTKSHIILVDLRNK--K-------- 324 (1342)
Q Consensus 263 -----~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~--~~~~~~~v~i~~~~~--~-------- 324 (1342)
.....++.+++..+..++++++.++..++++++.+.|.+. |+++.. .+..+.+++...+.. .
T Consensus 361 ~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~~~~~ 440 (504)
T 2okj_A 361 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNREEFEMVFNGEPEHTNVCFWYIPQSLRGVPDSPQRR 440 (504)
T ss_dssp SCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTEEESSSSCCSSSCEEEEECCGGGSSCCCCHHHH
T ss_pred CCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecCCCCeEEEEEEEeCccccccccchhhH
Confidence 0001122222222233477888899999999999999985 888865 244445544433321 0
Q ss_pred -----CCHHHHHHHHHHCCc-eeeeccCCCCCCCcccccccccccc-cccc
Q psy13354 325 -----ITGKIAESILESANI-ICNKNSIPNDPEKPYFTSGIRLGSS-AITT 368 (1342)
Q Consensus 325 -----~~~~~~~~ll~~~GI-~v~~~~~p~~~~~~~~~~~lRi~~~-~~~t 368 (1342)
.+.++...++++ |+ ++.+.... +. .+.+|++++ ..++
T Consensus 441 ~~~~~~~~~l~~~L~~~-G~~~~~~~~~~---~~---~~~lRis~~~~~~t 484 (504)
T 2okj_A 441 EKLHKVAPKIKALMMES-GTTMVGYQPQG---DK---ANFFRMVISNPAAT 484 (504)
T ss_dssp HHHTTHHHHHHHHHHHH-TSCEEEEEEET---TE---EEEEEECCCCTTCC
T ss_pred HHHHHHHHHHHHHHHhC-CcEEEEeeEEC---Cc---eEEEEEEeCCCCCC
Confidence 023456666666 64 44432211 11 247999997 4444
No 168
>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}
Probab=99.76 E-value=6.1e-17 Score=196.11 Aligned_cols=287 Identities=12% Similarity=0.154 Sum_probs=186.7
Q ss_pred eeeecCCCCcH--HHHHHHhHHHHhccccCCCCCCccCC-cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHH
Q psy13354 31 ELIASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGG-CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFF 107 (1342)
Q Consensus 31 ~l~a~~n~l~~--~v~eal~~~l~~~~~~g~~~~~~~~~-~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~ 107 (1342)
.+..+++.+++ .+.+++.+.+... .|+. .....++++ .+++++|.+++++++ ||++|+..++.
T Consensus 20 ~l~~~~p~~~~p~~~~~a~~~~~~~~---------~y~~~~~~~~~l~~----~la~~~~~~~v~~~~-ggt~al~~~l~ 85 (424)
T 2po3_A 20 PLLVGRPNRIDRARLYERLDRALDSQ---------WLSNGGPLVREFEE----RVAGLAGVRHAVATC-NATAGLQLLAH 85 (424)
T ss_dssp CEETTCCCCCCHHHHHHHHHHHHHHT---------CCSSSCHHHHHHHH----HHHHHHTSSEEEEES-CHHHHHHHHHH
T ss_pred cccccCCCCCChHHHHHHHHHHHhcC---------CcccCCHHHHHHHH----HHHHHhCCCeEEEeC-CHHHHHHHHHH
Confidence 35556655544 5888887777421 1333 344555555 888888887655555 99999999999
Q ss_pred HccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHHHH
Q psy13354 108 SVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186 (1342)
Q Consensus 108 al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~~I 186 (1342)
++. +||+|+++...|+++ ...+...|. +++.++.++ ++.+|++++++.+++ ++++|++++ ..+...++++|
T Consensus 86 ~l~-~gd~Vlv~~~~~~~~---~~~~~~~G~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~tG~~~~l~~i 157 (424)
T 2po3_A 86 AAG-LTGEVIMPSMTFAAT---PHALRWIGL--TPVFADIDPDTGNLDPDQVAAAVTP-RTSAVVGVH-LWGRPCAADQL 157 (424)
T ss_dssp HHT-CCSEEEEESSSCTHH---HHHHHHTTC--EEEEECBCTTTSSBCHHHHGGGCCT-TEEEEEEEC-GGGCCCCHHHH
T ss_pred HcC-CCCEEEECCCccHHH---HHHHHHcCC--EEEEEecCCCcCCcCHHHHHHhhCc-CCcEEEEEC-CCCCcCCHHHH
Confidence 985 789999877665544 445566677 455556653 678999999988865 456666543 23355699999
Q ss_pred HHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEe-chhHHHHhhccCCcc------
Q psy13354 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMK-KKYKKIINSAVFPGI------ 257 (1342)
Q Consensus 187 ~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~-~~l~~~l~~~~~~~~------ 257 (1342)
+++|+++|++||+|++|+.|....+.... ...|++++||| |+++++.||+++++ +++++.+........
T Consensus 158 ~~la~~~~~~li~Dea~~~g~~~~~~~~~--~~~di~~~S~sk~K~l~~~~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~ 235 (424)
T 2po3_A 158 RKVADEHGLRLYFDAAHALGCAVDGRPAG--SLGDAEVFSFHATKAVNAFEGGAVVTDDADLAARIRALHNFGFDLPGGS 235 (424)
T ss_dssp HHHHHHTTCEEEEECTTCTTCEETTEETT--SSSSEEEEECCTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTTTCTTCC
T ss_pred HHHHHHcCCEEEEECccccCCeECCeecc--cccCEEEEeCCCCCCccCCCCeEEEeCCHHHHHHHHHHHhcCccccccc
Confidence 99999999999999999876543332211 12489999998 88866666999998 677777654322111
Q ss_pred ----ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCC----CeEEEEEccCC--CCC
Q psy13354 258 ----QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTK----SHIILVDLRNK--KIT 326 (1342)
Q Consensus 258 ----~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~----~~~v~i~~~~~--~~~ 326 (1342)
.+....+..++++.. . . ++++.+.++..++++++.+.|.+. |+.+...+.+ .+++++.+++. +.+
T Consensus 236 ~~~g~~~~~~~~~aa~~l~--~-~-~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 311 (424)
T 2po3_A 236 PAGGTNAKMSEAAAAMGLT--S-L-DAFPEVIDRNRRNHAAYREHLADLPGVLVADHDRHGLNNHQYVIVEIDEATTGIH 311 (424)
T ss_dssp TTCCCBCCCCHHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHTCSCTTEEECCGGGGSCCCCCCEEEEECHHHHSSC
T ss_pred cccCcCCCcCHHHHHHHHH--H-H-HHHHHHHHHHHHHHHHHHHHhccCCCccccCCCCCCccccEEEEEEECCccchhh
Confidence 011112333333322 1 1 245667788888999999999886 7777542221 14455666531 223
Q ss_pred HHHHHHHHHHCCceeeecc
Q psy13354 327 GKIAESILESANIICNKNS 345 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~ 345 (1342)
.+.+...+.++||.+.+.+
T Consensus 312 ~~~l~~~L~~~gI~v~~~~ 330 (424)
T 2po3_A 312 RDLVMEVLKAEGVHTRAYF 330 (424)
T ss_dssp HHHHHHHHHHTTEECBCTT
T ss_pred HHHHHHHHHHCCCceeccc
Confidence 4444556666799998743
No 169
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; HET: FAD; 1.84A {Bacillus cereus} SCOP: c.3.1.8 e.74.1.1
Probab=99.75 E-value=2.7e-20 Score=227.00 Aligned_cols=264 Identities=18% Similarity=0.188 Sum_probs=178.7
Q ss_pred HHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcchH
Q psy13354 808 LYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTT 886 (1342)
Q Consensus 808 ~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~ 886 (1342)
.+.+.+.+.+++ .+++|+.+ +|++|..++++|.||.+.+|..+.|+.||+||| |.+++..|++|+
T Consensus 135 ~l~~~L~~~~~~-~GV~i~~~~~V~~i~~~~~~v~~V~~~~G~~i~Ad~VVlAtG---------g~s~~~~g~tG~---- 200 (447)
T 2i0z_A 135 SVVDALLTRLKD-LGVKIRTNTPVETIEYENGQTKAVILQTGEVLETNHVVIAVG---------GKSVPQTGSTGD---- 200 (447)
T ss_dssp HHHHHHHHHHHH-TTCEEECSCCEEEEEEETTEEEEEEETTCCEEECSCEEECCC---------CSSSGGGSCSSH----
T ss_pred HHHHHHHHHHHH-CCCEEEeCcEEEEEEecCCcEEEEEECCCCEEECCEEEECCC---------CCcCCCCCCCcH----
Confidence 344445555554 68999765 799999999999999999998899999999999 777777776665
Q ss_pred HHHHHHH-HcCCCccccccCCCcc-----------cccCcccc----------ccceeecCCCCCCCcccccCCCCCCCC
Q psy13354 887 SLAKRLK-ELQLSHGRLKTGTPPR-----------IDKRTIDF----------SKMEEQIGDFDPVPVFSVLGNINLHPK 944 (1342)
Q Consensus 887 ~l~~~l~-~~g~~~~~~~~~~~~r-----------~~~~si~~----------~~~~~~~~d~~~~~~f~~~~~~~~~~~ 944 (1342)
+..++ ++|+.+.++.+...|. +.+.++.. .++..+.|| +.|+||+.+||.++
T Consensus 201 --g~~la~~~G~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~g~r~~~~~ge-~~~t~~~~~g~~~l--- 274 (447)
T 2i0z_A 201 --GYAWAEKAGHTITELFPTEVPILSNEPFIRDRSLQGLALRDINLSVLNPKGKAIISHKMD-MLFTHFGLSGPAAL--- 274 (447)
T ss_dssp --HHHHHHHTTCCEEEEEECSCCEECCCHHHHTTTTTTCEEEEEEEEECC----CEEEEEEE-EEECSSEEESHHHH---
T ss_pred --HHHHHHHCCCCcccCcceeeeeecCCcccccccccCcccCCeEEEEEecCCceEecccCC-eEEECCcccHHHHH---
Confidence 45554 4788776544332211 22222100 112233467 88999999999877
Q ss_pred ccccchhhcchhH-HHHHHhhcccCCCCc-cccccc-----cCCCCCCcccccccCCCCCccceeEeecccccceeecCc
Q psy13354 945 QLSCFITHTNEKT-HNIIRSEFKNSPIFS-GKIESI-----GPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNG 1017 (1342)
Q Consensus 945 ~~~c~~~~~~~~~-~~~i~~~~~~~p~~~-~~~~~~-----g~r~~~s~~~k~~~~~~~~~~~~~l~p~~~~~~~~~~~g 1017 (1342)
++|.++....... .+.....+|+.|.++ .++... +.+--.++++.+ +...+..+.++.++...+.+++
T Consensus 275 ~~s~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~l~~~~~~~~~~~l~~~l-----~~~~~~~~~~~l~~~~~i~~~~ 349 (447)
T 2i0z_A 275 RCSQFVVKALKKFKTNTIQMSIDALPEENSEQLFQRMLKQMKEDPKKGIKNVL-----KGYVPERYFLFLLEKNEIDGSE 349 (447)
T ss_dssp HHHHHHHHHHHHHCCSCEEEEEESCTTSCHHHHHHHHHHHHTTSTTSBHHHHT-----TTSSCHHHHHHHHHHTTCCTTS
T ss_pred HHHHHHHHHHhcccCCceEEEEECCCCCCHHHHHHHHHHHHHhChhhhHHHhc-----cccChHHHHHHHHHHcCCCcCC
Confidence 6777665321000 000124567778776 222111 111111122111 1112222444455555677777
Q ss_pred cccCCCHHHHHHHHHhcccc----------cceEEecceeEEEeeeeCccCccccccccCcCCeeecccccCchhHH---
Q psy13354 1018 ISTSLPFEAQIELVQSIDGM----------KNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYE--- 1084 (1342)
Q Consensus 1018 ~~~~l~~~~q~~~~~~i~gl----------e~a~i~~~g~~v~~~~i~p~~l~~tlesk~~~gL~~aGqi~g~~gy~--- 1084 (1342)
...+++++...++.+.++.+ +.|.+|.||+.+.+ |||+ |||+|.|||||||||+.|++||+
T Consensus 350 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~T~GGv~~~~--i~~~----t~~~~~i~GLy~aGEv~~v~g~~GG~ 423 (447)
T 2i0z_A 350 QAGQVSHEKIRALVKDFKEFTVNVNGTQSIEKAFVTGGGVSVKE--INPK----EMSSKFTNGLYFCGEVLDIHGYTGGY 423 (447)
T ss_dssp BGGGSCHHHHHHHHHHHHHEEEEECEECCGGGCSSEEEEECGGG--EETT----TTEESSSBTEEECGGGBSCBCCTTTH
T ss_pred chhhCCHHHHHHHHHHhhCCEEEecCCCCccEEEEeCCceeeec--cccc----ccccCcCCCEEEEEeeccCccCCCcH
Confidence 88899999988888876654 57999999999999 9999 99999999999999999999987
Q ss_pred ---HHHHHHHHHHHHHHHHhC
Q psy13354 1085 ---EAASQGLLAGLNAALFSQ 1102 (1342)
Q Consensus 1085 ---eA~~~G~~Ag~na~~~~~ 1102 (1342)
.|+++|++||.+||..++
T Consensus 424 ~l~~a~~~G~~Ag~~aa~~~~ 444 (447)
T 2i0z_A 424 NITSALVTGRIAGTTAGENAK 444 (447)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 599999999999998764
No 170
>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1
Probab=99.75 E-value=1.5e-17 Score=200.57 Aligned_cols=306 Identities=12% Similarity=0.066 Sum_probs=195.2
Q ss_pred cCceeeeecCC-------CCcHHHHHHHhH-HHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC---CCceEe-
Q psy13354 27 NNNIELIASEN-------YTSLAVMEAQGT-LLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA---EAANVQ- 94 (1342)
Q Consensus 27 ~~~i~l~a~~n-------~l~~~v~eal~~-~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~---~~~vi~- 94 (1342)
.+.+.+..+.. +.++.+.+++.+ .+... ....|+...+..++++++++++....|. ++.+++
T Consensus 29 ~~~i~l~~g~~~d~~~~~~~~~~v~~a~~~~~~~~~------~~~~y~~~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~ 102 (412)
T 1yaa_A 29 ATKVDLGIGAYRDDNGKPWVLPSVKAAEKLIHNDSS------YNHEYLGITGLPSLTSNAAKIIFGTQSDALQEDRVISV 102 (412)
T ss_dssp SSCEECSSCCCBCTTSCBCCCHHHHHHHHHHHTCTT------CCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEE
T ss_pred CCeEEEeeeeeeCCCCCCCCcHHHHHHHHhhhcCcc------cccCCCCCCCcHHHHHHHHHHHhcCCCCCCCcceEEEE
Confidence 34577766652 455678888877 65311 1112333445567888666666443331 234555
Q ss_pred -cCCHHHHHHHHH--HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC-C-CCCCCCHHHHHHHHHhcC--C
Q psy13354 95 -PHSGSQANQAVF--FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-N-KKEKIDYKKVEYLAKKNK--P 167 (1342)
Q Consensus 95 -~~sGs~A~~~al--~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-~-~~~~id~e~Le~~i~~~~--~ 167 (1342)
++||++|+..++ ..++.|||+|++..+.+++ ....+...|..+..+ +. + +++.+|++++++.+++.+ .
T Consensus 103 ~t~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~~~~---~~~~~~~~g~~~~~v--~~~~~~~~~~d~~~l~~~l~~~~~~~ 177 (412)
T 1yaa_A 103 QSLSGTGALHISAKFFSKFFPDKLVYLSKPTWAN---HMAIFENQGLKTATY--PYWANETKSLDLNGFLNAIQKAPEGS 177 (412)
T ss_dssp EEEHHHHHHHHHHHHHHHHCTTCCEEEEESCCTT---HHHHHHTTTCCEEEE--ECEETTTTEECHHHHHHHHHHSCTTC
T ss_pred eccchHhHHHHHHHHHHHhCCCCEEEEeCCCCcc---HHHHHHHcCceEEEE--eeecCCCCccCHHHHHHHHHhCCCCC
Confidence 558899999883 4456799999988765554 344455667654444 44 2 367799999999998653 3
Q ss_pred eEEEEcCCCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhc--CCCCC--C---CCC---CcEEEecCCccCC
Q psy13354 168 KLIIAGASAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAA--GEYPN--P---VPF---ADFITSTTHKSLR 232 (1342)
Q Consensus 168 ~liv~~~s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~--~~~~~--~---l~~---~Divv~S~sK~l~ 232 (1342)
.++++++++|| +. .++++|+++|++||++||+|++|....++. ....+ . ... .+++++|+||++
T Consensus 178 ~~~~~~~p~nPtG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~- 256 (412)
T 1yaa_A 178 IFVLHSCAHNPTGLDPTSEQWVQIVDAIASKNHIALFDTAYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNA- 256 (412)
T ss_dssp EEEEECSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTS-
T ss_pred EEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCC-
Confidence 45554676666 22 257889999999999999999986433221 00000 0 011 357899999999
Q ss_pred CCCe---eEEE--E-----ech----hHHHHhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHH
Q psy13354 233 GPRG---GFIL--M-----KKK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAK 293 (1342)
Q Consensus 233 gp~G---G~iv--~-----~~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~ 293 (1342)
|+.| ||++ + +++ +++.+...... .+++++.+.+.++..++... ...+.++.++++.++++
T Consensus 257 ~~~GlriG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 335 (412)
T 1yaa_A 257 GMYGERVGCFHLALTKQAQNKTIKPAVTSQLAKIIRS-EVSNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRH 335 (412)
T ss_dssp CCGGGCEEEEEEECCSCTTHHHHHHHHHHHHHHHHHT-TTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcCCcceEEEEEecCCCCCHHHHHHHHHHHHHHHhh-ccCCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 9998 7 555 77766652222 23333455555555444332 12367788899999999
Q ss_pred HHHHHHHhCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 294 ILSKILDQRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 294 ~l~~~L~~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++.+.|.+.+ +++.. +..++++|+.+ +.+.+..+++++||.+.+ ++|++++.
T Consensus 336 ~l~~~L~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~~--------------~~Ris~~~ 391 (412)
T 1yaa_A 336 ALRDHLVKLGTPGNWDHIV-NQCGMFSFTGL-----TPQMVKRLEETHAVYLVA--------------SGRASIAG 391 (412)
T ss_dssp HHHHHHHHHTCSSCCTHHH-HCCSSEEECCC-----CHHHHHHHHHHHCEECCT--------------TSEEEGGG
T ss_pred HHHHHHHhhCCCCCeeeec-cCceEEEeeCC-----CHHHHHHHHHhCCEEecc--------------CcEEEEcc
Confidence 9999998865 65533 34566777643 235567788777999874 37998874
No 171
>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*
Probab=99.75 E-value=9.2e-18 Score=201.14 Aligned_cols=300 Identities=10% Similarity=0.031 Sum_probs=188.9
Q ss_pred CceeeeecC----CC---CcHHHHHHHhH-HHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CCC--ceEe
Q psy13354 28 NNIELIASE----NY---TSLAVMEAQGT-LLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AEA--ANVQ 94 (1342)
Q Consensus 28 ~~i~l~a~~----n~---l~~~v~eal~~-~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~~--~vi~ 94 (1342)
+.+++..+. +. .++.+++++.+ .+..... ..|....+..++++++++++....+ .++ .+++
T Consensus 27 ~~i~l~~g~y~d~~~~~~~~~~v~~a~~~~~~~~~~~------~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~ 100 (397)
T 3fsl_A 27 DKVNLSIGLYYNEDGIIPQLQAVAEAEARLNAQPHGA------SLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQ 100 (397)
T ss_dssp CCEECSSCCCCCTTSCCCCCHHHHHHHHHHHHSCCCC------CCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CeEEEeeeEEECCCCCccCcHHHHHHHHhhccCcccc------ccCCCCCchHHHHHHHHHHHhcCCcccccccceEEEE
Confidence 457777772 22 22569999887 7642111 1233334456777766666654433 234 5666
Q ss_pred cCCHHHHHHHHH--HHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEE
Q psy13354 95 PHSGSQANQAVF--FSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLI 170 (1342)
Q Consensus 95 ~~sGs~A~~~al--~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~li 170 (1342)
++||++|+..++ .+++.+||+|++..+. +......+...|..+..+++..++++.+|++++++.+++. +.+++
T Consensus 101 t~g~~~a~~~~~~~~~~~~~gd~vl~~~p~---~~~~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v 177 (397)
T 3fsl_A 101 TLGGSGALKVGADFLKRYFPESGVWVSDPT---WENHVAIFAGAGFEVSTYPWYDEATNGVRFNDLLATLKTLQAGSIVL 177 (397)
T ss_dssp ESHHHHHHHHHHHHHHHHCTTCCEEEESSC---CHHHHHHHHHTTCCEEEECCEETTTTEECHHHHHHHHTTCCTTCEEE
T ss_pred cCCcHHHHHHHHHHHHhcCCCCeEEEeCCC---chhHHHHHHHcCCceEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEE
Confidence 668899999994 5568999999977644 4444555666777544443322456889999999999853 34667
Q ss_pred EEcCCCCC-c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhcC-CCCCC-----CCCCcEEEecCCccCCCCCe---
Q psy13354 171 IAGASAYS-Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAAG-EYPNP-----VPFADFITSTTHKSLRGPRG--- 236 (1342)
Q Consensus 171 v~~~s~~~-~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~~-~~~~~-----l~~~Divv~S~sK~l~gp~G--- 236 (1342)
++++++|| + . .++++|+++|++||++||+||+|+.+.+... ...+. .....++++|+||++ |+.|
T Consensus 178 ~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-~~~G~ri 256 (397)
T 3fsl_A 178 LHPCCHNPTGADLTNDQWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIF-SLYGERV 256 (397)
T ss_dssp ECSSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTT-TCGGGCC
T ss_pred EeCCCCCCCCcCCCHHHHHHHHHHHHhCCEEEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccc-cCcCCCe
Confidence 76666666 2 2 3677999999999999999999876544210 00000 112358889999999 7667
Q ss_pred eEEEEe---chhHHHHhhccC---CccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhC---
Q psy13354 237 GFILMK---KKYKKIINSAVF---PGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQR--- 302 (1342)
Q Consensus 237 G~iv~~---~~l~~~l~~~~~---~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~--- 302 (1342)
||++++ +++++.+..... ...+++++...+.+++.++... ..++.++.++++.++++++.+.|.+.
T Consensus 257 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 336 (397)
T 3fsl_A 257 GGLSVMCEDAEAAGRVLGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPE 336 (397)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred eEEEEecCCHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 998753 344443322110 0122222333444433333211 12356778899999999999999886
Q ss_pred -CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 303 -GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 303 -g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
|+.+.. +..++++|+.++ .+.+..+++++||.+.+
T Consensus 337 ~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~~~gi~v~~ 372 (397)
T 3fsl_A 337 RNFDYLL-NQRGMFSYTGLS-----AAQVDRLREEFGVYLIA 372 (397)
T ss_dssp SCCTHHH-HCCSSEEECCCC-----HHHHHHHHHTTCEECCT
T ss_pred CCceeec-CCceEEEecCCC-----HHHHHHHHHhCCEEECC
Confidence 565433 345677886653 46678888888999974
No 172
>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*
Probab=99.75 E-value=2.3e-17 Score=198.92 Aligned_cols=309 Identities=11% Similarity=0.017 Sum_probs=194.6
Q ss_pred cCceeeeecC--C-----CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC---CCCceEe--
Q psy13354 27 NNNIELIASE--N-----YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN---AEAANVQ-- 94 (1342)
Q Consensus 27 ~~~i~l~a~~--n-----~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g---~~~~vi~-- 94 (1342)
.+.+++..+. + +.++.+.+++.+.+.. . .....|+...+..++++++.+++....| ..+.+++
T Consensus 30 ~~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~-~----~~~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~ 104 (412)
T 1ajs_A 30 PRKVNLGVGAYRTDDCQPWVLPVVRKVEQRIANN-S----SLNHEYLPILGLAEFRTCASRLALGDDSPALQEKRVGGVQ 104 (412)
T ss_dssp TTCEECCSCCCCCTTSCCCCCHHHHHHHHHHHTC-T----TCCCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEE
T ss_pred CCceeeccceecCCCCCccccHHHHHHHHHhhhC-h----hhccCCCCCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEE
Confidence 3557777765 2 3446788887776521 1 0111233344456777755555433222 1234554
Q ss_pred cCCHHHHHHHHHH--HccCCC-----CEEEEeeccCCccchhhHHhhhCCce-eEEEEecCCCCCCCCHHHHHHHHHhc-
Q psy13354 95 PHSGSQANQAVFF--SVLNPG-----DTIMGMSLQEGGHLTHGMMLNMSGKW-FNSICYGLNKKEKIDYKKVEYLAKKN- 165 (1342)
Q Consensus 95 ~~sGs~A~~~al~--al~~pG-----D~Vlv~~~~~~~~~s~~~~~~~~g~~-~~~v~~~~~~~~~id~e~Le~~i~~~- 165 (1342)
++||++|+..++. +++.+| |+|++..+.|++ ....+...|.. +..+++..++++.+|++++++.+.+.
T Consensus 105 t~gg~~a~~~~~~~~~~~~~g~~~~~d~Vl~~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~ 181 (412)
T 1ajs_A 105 SLGGTGALRIGAEFLARWYNGTNNKDTPVYVSSPTWEN---HNGVFTTAGFKDIRSYRYWDTEKRGLDLQGFLSDLENAP 181 (412)
T ss_dssp EEHHHHHHHHHHHHHHHHSSSSSCCCSCEEEEESCCTH---HHHHHHHTTCSCEEEEECEETTTTEECHHHHHHHHHHSC
T ss_pred CCCcHHHHHHHHHHHHHhCcCcCCCCCeEEEcCCCcHH---HHHHHHHcCCceeEEEeeecCCCCccCHHHHHHHHHhCC
Confidence 5599999999954 456899 999988765554 34445666765 55554322356778999999998864
Q ss_pred -CCeEEEEcCCCCC-c-c---cCHHHHHHHHHHcCCEEEEEcccchhhhhc--CCCCCC--C---CCCcEEEecCCccCC
Q psy13354 166 -KPKLIIAGASAYS-Q-Y---IDFERFYHIAKNINSYFMVDMAHYAGLIAA--GEYPNP--V---PFADFITSTTHKSLR 232 (1342)
Q Consensus 166 -~~~liv~~~s~~~-~-~---~~l~~I~~la~~~gi~LIvDea~~~g~~~~--~~~~~~--l---~~~Divv~S~sK~l~ 232 (1342)
+..++++++++|| + . .++++|+++|++||++||+||+|......+ ..+... + ...+++++|+||++
T Consensus 182 ~~~~~v~~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~- 260 (412)
T 1ajs_A 182 EFSIFVLHACAHNPTGTDPTPEQWKQIASVMKRRFLFPFFDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNF- 260 (412)
T ss_dssp TTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-
T ss_pred CCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEcccccccCCcccccchHHHHHhccCCcEEEEEeccccc-
Confidence 3456666676666 2 2 357899999999999999999976433321 011000 1 11248899999999
Q ss_pred CCCe---eEEEE---ech----hHHHHhhccCCccccCCcHHHHHHHHHHHHHhc-----cchHHHHHHHHHHHHHHHHH
Q psy13354 233 GPRG---GFILM---KKK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL-----KPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 233 gp~G---G~iv~---~~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l-----~~~~~~~~~~l~~~a~~l~~ 297 (1342)
|+.| ||+++ +++ +++.+... ....+++++.+.+.++..++.... ..+.++.++++.++++++.+
T Consensus 261 ~~~G~riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 339 (412)
T 1ajs_A 261 GLYNERVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPPAQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRA 339 (412)
T ss_dssp CCGGGCEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCChHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7777 99999 776 44444431 112223333445555544443321 23667788999999999999
Q ss_pred HHHhCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 298 ILDQRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 298 ~L~~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.|.+.+ +.+.. +..+++.|+.++ .+.+..+++++||.+.+ ++|++++.
T Consensus 340 ~L~~~~~~~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~--------------~~Ris~~~ 391 (412)
T 1ajs_A 340 RLEALKTPGTWNHIT-DQIGMFSFTGLN-----PKQVEYLINQKHIYLLP--------------SGRINMCG 391 (412)
T ss_dssp HHHHTTCSSCCHHHH-HCCSSEEECCCC-----HHHHHHHHHTTCEECCT--------------TSEEEGGG
T ss_pred HHHhhCCCCCeeEEc-CCCceEEEeCCC-----HHHHHHHHHhCCEEecC--------------CcEEEeee
Confidence 999876 55433 345677776543 56788888888999974 26888874
No 173
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.75 E-value=3.7e-17 Score=190.52 Aligned_cols=207 Identities=24% Similarity=0.311 Sum_probs=167.8
Q ss_pred hhccCCCCccccccchhhHHHHHHHHHc----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINALDK----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l~~----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
..+|+|.+|++++|++.+++.+...+.. +..++.+||+||+|+|||++|+.+++.+++
T Consensus 3 ~~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~------------------ 64 (324)
T 1hqc_A 3 DLALRPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV------------------ 64 (324)
T ss_dssp --CCCCCSTTTCCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTC------------------
T ss_pred ccccCcccHHHhhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCC------------------
Confidence 4789999999999999999888887753 345567899999999999999999998863
Q ss_pred chhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC----------
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP---------- 527 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~---------- 527 (1342)
.+..++++......++...+.. ..++..+++|||++.++...++.|++.+++..
T Consensus 65 -----------~~~~~~~~~~~~~~~l~~~l~~-----~~~~~~~l~lDEi~~l~~~~~~~L~~~l~~~~~~~v~~~~~~ 128 (324)
T 1hqc_A 65 -----------NLRVTSGPAIEKPGDLAAILAN-----SLEEGDILFIDEIHRLSRQAEEHLYPAMEDFVMDIVIGQGPA 128 (324)
T ss_dssp -----------CEEEECTTTCCSHHHHHHHHTT-----TCCTTCEEEETTTTSCCHHHHHHHHHHHHHSEEEECCSSSSS
T ss_pred -----------CEEEEeccccCChHHHHHHHHH-----hccCCCEEEEECCcccccchHHHHHHHHHhhhhHHhcccccc
Confidence 2344444433333333333221 12456799999999999988999999887532
Q ss_pred --------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHH
Q psy13354 528 --------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDAL 598 (1342)
Q Consensus 528 --------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~ 598 (1342)
+++++|++++....+.+++.+|+ .++.+.+++.+++..++...+...+..+++++++.+++.++|++|.+.
T Consensus 129 ~~~~~~~~~~~~~i~~t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G~~r~l~ 208 (324)
T 1hqc_A 129 ARTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAK 208 (324)
T ss_dssp CCCEEEECCCCEEEEEESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCSCHHHHH
T ss_pred ccccccCCCCEEEEEeCCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccCCHHHHH
Confidence 35789999999999999999999 799999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhcC----CCCCHHHHHHHhc
Q psy13354 599 SLTDQAINYSS----EKITLNSMQEMLS 622 (1342)
Q Consensus 599 ~~L~kl~~~~~----~~It~e~V~~~v~ 622 (1342)
+.++.+..++. ..|+.+++..++.
T Consensus 209 ~~l~~~~~~a~~~~~~~i~~~~~~~~~~ 236 (324)
T 1hqc_A 209 RLFRRVRDFAQVAGEEVITRERALEALA 236 (324)
T ss_dssp HHHHHHTTTSTTTSCSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHH
Confidence 99999877662 4599998887663
No 174
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3
Probab=99.75 E-value=3.6e-17 Score=197.34 Aligned_cols=306 Identities=14% Similarity=0.186 Sum_probs=196.2
Q ss_pred eeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCC-ccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHH
Q psy13354 30 IELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKR-YYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVF 106 (1342)
Q Consensus 30 i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~-~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al 106 (1342)
+.+..+. .+.++.+.+++.+.+...+ +++... ++.. ...+...++++++++++|.+ +.+++++||++++..++
T Consensus 30 ~yld~~~~~~~~~~v~~a~~~~l~~~~--~~~~~~~~~~~--~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al 105 (416)
T 1qz9_A 30 IYLDGNSLGARPVAALARAQAVIAEEW--GNGLIRSWNSA--GWRDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVL 105 (416)
T ss_dssp EECCTTTSCCCBTTHHHHHHHHHHTCC--CCCGGGHHHHT--SGGGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHH
T ss_pred EeecCCCcCCCcHHHHHHHHHHHHHHH--hccCccccchh--hHHHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHH
Confidence 4444333 4556669999888875332 222111 1110 01133444666999999986 55666669999999888
Q ss_pred HHcc------CCCCEEEE-eeccCCccchhhHH-hhhC--CceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCC
Q psy13354 107 FSVL------NPGDTIMG-MSLQEGGHLTHGMM-LNMS--GKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASA 176 (1342)
Q Consensus 107 ~al~------~pGD~Vlv-~~~~~~~~~s~~~~-~~~~--g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~ 176 (1342)
.+++ .+||+|++ .+..|+++...... .... |. +++.++. ++++++.+++ +++++++++++
T Consensus 106 ~~~~~~~~~~~~gd~vii~~~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~-------~~~l~~~i~~-~~~~v~~~~~~ 175 (416)
T 1qz9_A 106 SAALRVQATRSPERRVIVTETSNFPTDLYIAEGLADMLQQGY--TLRLVDS-------PEELPQAIDQ-DTAVVMLTHVN 175 (416)
T ss_dssp HHHHHHHHHHSTTCCEEEEETTSCHHHHHHHHHHHHHHCSSC--EEEEESS-------GGGHHHHCST-TEEEEEEESBC
T ss_pred HhhcccccccCCCCcEEEEcCCCCCchHHHHHHHHHHhcCCc--eEEEeCc-------HHHHHHHhCC-CceEEEEeccc
Confidence 8876 89997554 44455443322221 2222 55 4444443 6678877765 45666666665
Q ss_pred CC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCC-CCCe-eEEEEechhHHHHh
Q psy13354 177 YS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLR-GPRG-GFILMKKKYKKIIN 250 (1342)
Q Consensus 177 ~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~-gp~G-G~iv~~~~l~~~l~ 250 (1342)
++ ...++++|.++|++||++||+|++|+.|.... .+. .+|++++|+||+++ |+.+ |++++++++++.+.
T Consensus 176 nptG~~~~l~~i~~l~~~~~~~li~D~a~~~g~~~~-----~~~~~~~d~~~~s~~K~l~~g~~~~g~l~~~~~~~~~l~ 250 (416)
T 1qz9_A 176 YKTGYMHDMQALTALSHECGALAIWDLAHSAGAVPV-----DLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVP 250 (416)
T ss_dssp TTTCBBCCHHHHHHHHHHHTCEEEEECTTTTTTSCC-----CHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSC
T ss_pred cCcccccCHHHHHHHHHHcCCEEEEEccccccCcCC-----ChhhcCCCEEEecCcccCCCCCCCeEEEEECHHHHhccC
Confidence 55 45589999999999999999999998654311 111 26899999999984 5566 99999998776655
Q ss_pred hccCC----------------------ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----Cc
Q psy13354 251 SAVFP----------------------GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GI 304 (1342)
Q Consensus 251 ~~~~~----------------------~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~ 304 (1342)
..... +..++++.+.++++..++.....+++++..+++.++++++.+.|.+. |+
T Consensus 251 ~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~ 330 (416)
T 1qz9_A 251 QPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL 330 (416)
T ss_dssp CSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred CCccccCccccccCCCCccCCCcchHHhcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCe
Confidence 42111 12234555555555556555544578888999999999999999886 88
Q ss_pred EEeeCCC---CCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc-ccc
Q psy13354 305 RIVSGGT---KSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA-ITT 368 (1342)
Q Consensus 305 ~~~~~~~---~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~-~~t 368 (1342)
++..+.. ..+++++.+++ ..++...+. ++||.+... ..+.+|++++. .++
T Consensus 331 ~~~~~~~~~~~~~~~~~~~~~---~~~l~~~l~-~~gi~~~~~----------~~~~lRis~~~~~~t 384 (416)
T 1qz9_A 331 TLVTPREHAKRGSHVSFEHPE---GYAVIQALI-DRGVIGDYR----------EPRIMRFGFTPLYTT 384 (416)
T ss_dssp EECSCSSGGGBCSEEEEECTT---HHHHHHHHH-TTTEECEEE----------TTTEEEEECCTTTCC
T ss_pred EEeCCCCHHHcCCEEEEecCC---HHHHHHHHH-hCCcEeccC----------CCCeEEEeCcccCCC
Confidence 8755321 25678888763 345555555 569987531 13569999874 444
No 175
>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}
Probab=99.75 E-value=4.2e-17 Score=198.98 Aligned_cols=276 Identities=14% Similarity=0.088 Sum_probs=177.1
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC------CceEe--cCCHHHHHHH--HHHHccCCCCEEEEeeccCCccchhhHHhh
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE------AANVQ--PHSGSQANQA--VFFSVLNPGDTIMGMSLQEGGHLTHGMMLN 134 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~------~~vi~--~~sGs~A~~~--al~al~~pGD~Vlv~~~~~~~~~s~~~~~~ 134 (1342)
|....+..++++++++++ +|.+ +.+++ ++||++|+.. .+.+++.|||+|+++.+.++.+ ...+.
T Consensus 90 Y~~~~G~~~lr~~ia~~l---~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~~~~gd~Vlv~~p~~~~~---~~~~~ 163 (448)
T 3meb_A 90 YPPVAGFPLFLEAAQFLM---FGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHLWMPKAEFYMPSTTWPNH---YGIYD 163 (448)
T ss_dssp CCCTTCCHHHHHHHHHHH---HCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHHHCTTCCEEEESSCCTHH---HHHHH
T ss_pred CCCCcchHHHHHHHHHHh---cCCCccccCcCcEEEEECCcHHHHHHHHHHHHHHhCCCCEEEECCCCCHhH---HHHHH
Confidence 344445567777444444 2654 45555 6699999987 5567788999999887665544 44445
Q ss_pred ----hCCceeEEEEecC-CC--CCCCCHHHHHHHHHh--cCCeEEEEcCCCCC-c----ccCHHHHHHHHHHcCCEEEEE
Q psy13354 135 ----MSGKWFNSICYGL-NK--KEKIDYKKVEYLAKK--NKPKLIIAGASAYS-Q----YIDFERFYHIAKNINSYFMVD 200 (1342)
Q Consensus 135 ----~~g~~~~~v~~~~-~~--~~~id~e~Le~~i~~--~~~~liv~~~s~~~-~----~~~l~~I~~la~~~gi~LIvD 200 (1342)
..|..+. .+++ ++ ++.+|++.+++.+++ .+..+++++.++|| + ..++++|+++|++||+++|+|
T Consensus 164 ~~~~~~G~~v~--~~~~~~~~~~~~~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~~~~~l~~i~~l~~~~~~~li~D 241 (448)
T 3meb_A 164 KVFNKLKVPYK--EYTYLRKDGELEIDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDFTEAQWKELLPIMKEKKHIAFFD 241 (448)
T ss_dssp HHHCTTTSCCE--EECCBCTTSCSSBCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEE
T ss_pred hhHHhCCCeEE--EEeccccccCCCcCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 6676444 4454 43 488999999999986 34566676666666 2 225778999999999999999
Q ss_pred cccchhhhhcC--CCCCC-----CCCCcEEEecCCccCCCCCe---eEE--EE--------e-c----hhHHHHhhccCC
Q psy13354 201 MAHYAGLIAAG--EYPNP-----VPFADFITSTTHKSLRGPRG---GFI--LM--------K-K----KYKKIINSAVFP 255 (1342)
Q Consensus 201 ea~~~g~~~~~--~~~~~-----l~~~Divv~S~sK~l~gp~G---G~i--v~--------~-~----~l~~~l~~~~~~ 255 (1342)
++|....+... ..... .....++++|+||.| |+.| ||+ ++ + + .+++.+.....
T Consensus 242 eay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~-g~~G~RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~~~- 319 (448)
T 3meb_A 242 SAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNF-GLYGERIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQIR- 319 (448)
T ss_dssp ESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTS-CCGGGCCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHHHH-
T ss_pred cccccccCCCcccCchhHHHHhhcCCcEEEEecccccC-CCccccceeeeeeeccccccccCCHHHHHHHHHHHHHHHh-
Confidence 99875433210 00000 011247799999999 7777 997 66 4 4 55555554222
Q ss_pred ccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhCCcEE------e--eCCCCCeEEEEEccC
Q psy13354 256 GIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQRGIRI------V--SGGTKSHIILVDLRN 322 (1342)
Q Consensus 256 ~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~------~--~~~~~~~~v~i~~~~ 322 (1342)
..+.+++...+.+++.++... ..+.++..++++.++++++.+.|.+.|++. . ..+..+++.|+.+
T Consensus 320 ~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~~~~~~g~~~~~~~-- 397 (448)
T 3meb_A 320 KTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRKTPGPGSKGTWDHILTAIGMFTFTGL-- 397 (448)
T ss_dssp TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSTTTCCCTHHHHCCSSEEECCC--
T ss_pred cccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCcCcccccceeCCCceEEEecCC--
Confidence 223334455555544443221 112467788899999999999999874332 1 1245567777655
Q ss_pred CCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 323 ~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+.+++..+++++||.+.++. .|++++..++
T Consensus 398 ---~~~~~~~ll~~~gV~v~~G~-------------gRis~a~~~~ 427 (448)
T 3meb_A 398 ---TPEHVDYLKEKWSIYLVKAG-------------GRMSMCGLTE 427 (448)
T ss_dssp ---CHHHHHHHHHHHCEEECSGG-------------GEEEGGGCCT
T ss_pred ---CHHHHHHHHHhCCEEEeCCC-------------cEEEEecCCH
Confidence 35788888888899997531 3888865444
No 176
>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}
Probab=99.74 E-value=1.6e-17 Score=201.22 Aligned_cols=339 Identities=17% Similarity=0.067 Sum_probs=202.0
Q ss_pred cccccchHHHHHHHHHHHhccCceeeeecCCC---CcH--HHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHH
Q psy13354 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENY---TSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINR 81 (1342)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~i~l~a~~n~---l~~--~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~ 81 (1342)
.++.....+......... ....++|..+++. +++ .+.+++.+.+.... + .....|+...+..++++ .
T Consensus 13 ~l~~~~~~~~~~~~~l~~-~~~~i~l~~g~~~~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~Y~~~~G~~~lr~----~ 84 (422)
T 3d6k_A 13 RLAQVREEVTAKYAELKA-KNLSLDLTRGKPSAEQLDLSNDLLSLPGGDFRTKD--G-VDCRNYGGLLGIADIRE----L 84 (422)
T ss_dssp -----CHHHHHHHHHHHH-TTCCEECCCCSCCHHHHHTTGGGGGCSTTCCBCTT--C-CBTTSSCCSSCCHHHHH----H
T ss_pred HHHhhHHHHHHHHHHHhc-cCCeEeCCCCCCChhhCCCcHHHHHHHHHHHhhcc--c-hhhhCCCCCCCCHHHHH----H
Confidence 444445556666544433 2346888887763 222 35554433210000 0 01122444444556776 6
Q ss_pred HHHHhCCC-CceEecCCHHHHH--HHHHHHccCC------------CCEEEEeeccCCccchhhHHhhhCCceeEEEEec
Q psy13354 82 LKKIFNAE-AANVQPHSGSQAN--QAVFFSVLNP------------GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYG 146 (1342)
Q Consensus 82 la~~~g~~-~~vi~~~sGs~A~--~~al~al~~p------------GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~ 146 (1342)
++++++.+ +.+++++|+++++ ..++.++..+ +|+|++..+.|++ ....+...|..+ +.++
T Consensus 85 ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~~~g~~~~~~~d~~~Vl~~~p~y~~---~~~~~~~~g~~~--~~v~ 159 (422)
T 3d6k_A 85 WAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGNNDSSRPWSAEEKVKWLCPVPGYDR---HFTITEHFGFEM--INVP 159 (422)
T ss_dssp HHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSCCEEEEEESCCHH---HHHHHHHHTCEE--EEEE
T ss_pred HHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcccccccccccCCCCEEEEeCCccHH---HHHHHHHcCCEE--EecC
Confidence 77777876 5666665777787 5666777655 3479977755544 444555667744 4445
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEE-EcCCCCC--cccC---HHHHHHHHH-HcCCEEEEEcccchhhhh-cCC-CCCC-
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLII-AGASAYS--QYID---FERFYHIAK-NINSYFMVDMAHYAGLIA-AGE-YPNP- 216 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv-~~~s~~~--~~~~---l~~I~~la~-~~gi~LIvDea~~~g~~~-~~~-~~~~- 216 (1342)
.++++ +|++++++.+++.++++++ ++.++|| ...+ +++|+++|+ +||++||+||+|..+.+. .+. +.+.
T Consensus 160 ~~~~g-~d~~~l~~~l~~~~~~~v~~~~~~~NPtG~~~~~~~l~~l~~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~ 238 (422)
T 3d6k_A 160 MTDEG-PDMGVVRELVKDPQVKGMWTVPVFGNPTGVTFSEQTCRELAEMSTAAPDFRIVWDNAYALHTLSDEFPIVHNVI 238 (422)
T ss_dssp EETTE-ECHHHHHHHHTSTTEEEEEECCSSCTTTCCCCCHHHHHHHHHCCCSSTTCEEEEECTTTTCBSSSCCCCCCCHH
T ss_pred CCCCC-CCHHHHHHHHhcCCCeEEEEcCCCCCCCCCCCCHHHHHHHHHHHhhccCCEEEEECCccccccCCCCCCCcChh
Confidence 54445 8999999999765567766 5556665 2234 558888888 999999999999752232 221 1121
Q ss_pred -------CCCCcEEEecCCccCCCC--CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHH--hccchHHHHH
Q psy13354 217 -------VPFADFITSTTHKSLRGP--RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKE--VLKPDFKIYQ 285 (1342)
Q Consensus 217 -------l~~~Divv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~--~l~~~~~~~~ 285 (1342)
....+++++||||+. ++ ..||+++++++++.+......+.+ +++.+.+.++..++.. ....++++.+
T Consensus 239 ~~~~~~~~~~~~i~~~S~SK~~-~~GlriG~~~~~~~l~~~l~~~~~~~~~-~~~~~~q~a~~~~l~~~~~~~~~~~~~~ 316 (422)
T 3d6k_A 239 EFAQAAGNPNRFWFMSSTSKIT-HAGSGVSFFASSKENIEWYASHANVRGI-GPNKLNQLAHAQFFGDVAGLKAHMLKHA 316 (422)
T ss_dssp HHHHHTTCTTCEEEEEESTTTS-CTTSSCEEEECCHHHHHHHHHHHHHHCS-CCCHHHHHHHHHHHCSHHHHHHHHHHHH
T ss_pred hHhhccCCCCcEEEEcChhhhc-CcccceEEEEeCHHHHHHHHHHHHhhcC-CCCHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 112468899999984 43 239999999988887764333333 3345555555544432 1123566677
Q ss_pred HHHHHHHHHHHHHHHh----CC-cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeec-cCCCCCCCccccccc
Q psy13354 286 KQVVKNAKILSKILDQ----RG-IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKN-SIPNDPEKPYFTSGI 359 (1342)
Q Consensus 286 ~~l~~~a~~l~~~L~~----~g-~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~-~~p~~~~~~~~~~~l 359 (1342)
+.+.++++++.+.|.+ .| +.+. .+.+++++|+.++.. +.+.+..++.++||.+.+. ..+..... -..+++
T Consensus 317 ~~~~~~~~~l~~~L~~~l~~~~~~~~~-~p~~g~~~~~~~~~~--~~~~~~~~l~~~gV~v~~~g~~f~~~~~-~~~~~i 392 (422)
T 3d6k_A 317 ASLAPKFERVLEILDSRLSEYGVAKWT-SPTGGYFISVDVVPG--TASRVVELAKEAGIALTGAGSSFPLHND-PNNENI 392 (422)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGTCEEEC-CCSBSSCEEEEESTT--CHHHHHHHHHHTTEECCCTTTTSGGGCC-TTSCEE
T ss_pred HHHHHHHHHHHHHHHHhcCcCCceEEe-CCCcceEEEEECCCC--CHHHHHHHHHHCCeEEEcCccccCCCCC-CCCCeE
Confidence 7778888888887765 34 4543 356788999998754 3455566777789999983 32221000 013579
Q ss_pred cccccc
Q psy13354 360 RLGSSA 365 (1342)
Q Consensus 360 Ri~~~~ 365 (1342)
|++++.
T Consensus 393 Ris~~~ 398 (422)
T 3d6k_A 393 RLAPSL 398 (422)
T ss_dssp EECCSS
T ss_pred EEecCC
Confidence 999986
No 177
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Probab=99.74 E-value=7.6e-18 Score=203.48 Aligned_cols=248 Identities=17% Similarity=0.144 Sum_probs=167.1
Q ss_pred HHHHHHHHHHHhCCCCceE---ecCCHHHHHHHHHHHccCCCCEEEEee-ccCCccchhh-------HHhhhCCceeEEE
Q psy13354 75 EKIAINRLKKIFNAEAANV---QPHSGSQANQAVFFSVLNPGDTIMGMS-LQEGGHLTHG-------MMLNMSGKWFNSI 143 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi---~~~sGs~A~~~al~al~~pGD~Vlv~~-~~~~~~~s~~-------~~~~~~g~~~~~v 143 (1342)
.+++++++++++|.+.+.+ ++ ||++|+..++.++++|||+|++.. ..++.+.... ..+...|. +++
T Consensus 67 ~~~l~~~la~~~g~~~~~~~i~~~-sGt~Ai~~al~al~~~Gd~Vl~~~~~~y~~~~~~~~l~g~~~~~~~~~G~--~~~ 143 (431)
T 3ht4_A 67 RDTLEKVYADVFGAEAGLVRPQII-SGTHAISTALFGILRPGDELLYITGKPYDTLEEIVGVRGKGVGSFKEYNI--GYN 143 (431)
T ss_dssp HHHHHHHHHHHTTCSEECCBTTSC-SHHHHHHHHHHTTCCTTCEEEECSSSCCTTHHHHTTSSSCSSSCSGGGTC--EEE
T ss_pred HHHHHHHHHHHhCCCcccccceee-CHHHHHHHHHHHhCCCCCEEEEeCCCCchhHHHHHhhcccccchHHHcCC--EEE
Confidence 4556669999999985554 66 999999999999999999999876 5555433222 12233455 666
Q ss_pred EecCCCCCCCCHHHHHHHHHhcCCeEEEEcC-CCCC-----cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCC
Q psy13354 144 CYGLNKKEKIDYKKVEYLAKKNKPKLIIAGA-SAYS-----QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPN 215 (1342)
Q Consensus 144 ~~~~~~~~~id~e~Le~~i~~~~~~liv~~~-s~~~-----~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~ 215 (1342)
.++.+++|.+|++++++++++ ++++|++++ ++|+ ...++++|+++|++ +|++||+|++|+.+.... .
T Consensus 144 ~v~~~~~~~~d~e~l~~~l~~-~tk~V~i~~sp~np~~~~~~~~~l~~i~~la~~~~~~~~livDea~~~~~~~~----~ 218 (431)
T 3ht4_A 144 AVPLTEGGLVDFEAVAAAIHS-NTKMIGIQRSKGYATRPSFTISQIKEMIAFVKEIKPDVVVFVDNCYGEFIEEQ----E 218 (431)
T ss_dssp ECCBCTTSSBCHHHHHHHCCT-TEEEEEEECSCTTSSSCCCCHHHHHHHHHHHHHHCTTCEEEEECTTCTTSSSC----C
T ss_pred EeCCCCCCCcCHHHHHhhcCC-CCeEEEEECCCCCCCCCcCCHHHHHHHHHHHHhhCCCCEEEEeCCChhhccCC----C
Confidence 677777789999999999875 456666653 4444 34489999999999 999999999998765421 1
Q ss_pred CCC-CCcEEEecCCccCCC---CCeeEEEEechhHHHHhhccCCcccc--CCcHHHHHHHHHHHHHhccchHHHHHHHHH
Q psy13354 216 PVP-FADFITSTTHKSLRG---PRGGFILMKKKYKKIINSAVFPGIQG--GPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289 (1342)
Q Consensus 216 ~l~-~~Divv~S~sK~l~g---p~GG~iv~~~~l~~~l~~~~~~~~~~--~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~ 289 (1342)
+.. .+|++++|+||+++| +.||++++++++++.+.........+ ...++..+.+...... ....+.++..
T Consensus 219 ~~~~g~Di~~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~~~l~----~~~~~~~~~~ 294 (431)
T 3ht4_A 219 PCHVGADLMAGSLIKNPGGGIVKTGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMYQGFF----LAPHVAGQAL 294 (431)
T ss_dssp GGGTTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHHHHHH----HHHHHHHHHH
T ss_pred ccccCCeEEEcCccccCCCCCCCceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHHhHhh----hHHHHHHHHH
Confidence 222 369999999999755 67899999999988887632222111 1111111111111111 2345678889
Q ss_pred HHHHHHHHHHHhCCcEEeeCCCCCe-----EEEEEccCCCCCHHHHHHHHHH
Q psy13354 290 KNAKILSKILDQRGIRIVSGGTKSH-----IILVDLRNKKITGKIAESILES 336 (1342)
Q Consensus 290 ~~a~~l~~~L~~~g~~~~~~~~~~~-----~v~i~~~~~~~~~~~~~~ll~~ 336 (1342)
+++.++.+.|++.|+++.+. .++ ++.+.+++.....++++.+.+.
T Consensus 295 ~~a~~l~~~L~~~g~~v~p~--~~~~~~~li~~i~l~~~~~~~~~~~~l~~~ 344 (431)
T 3ht4_A 295 KGAIFTAAFLEKLGMNTSPA--WNAPRTDLIQSVQFDDKDRMIAFCQAIQYA 344 (431)
T ss_dssp HHHHHHHHHHHHHTCCEESC--TTSCCSSSCCEEECCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcCEecCC--CCCCCccEEEEEEeCCHHHHHHHHHHHHhc
Confidence 99999999999999877432 233 6777776432233455555443
No 178
>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0
Probab=99.74 E-value=1.8e-17 Score=198.83 Aligned_cols=334 Identities=16% Similarity=0.104 Sum_probs=207.2
Q ss_pred CccccccccccchH-HHHHHHHHHHhc-cCceeeeecC----C---CCcHHHHHHHhHHH-HhccccCCCCCCccCCcch
Q psy13354 1 MIIKNENLSKIDPK-IWEIILKEKQRQ-NNNIELIASE----N---YTSLAVMEAQGTLL-TNKYAEGYPGKRYYGGCKF 70 (1342)
Q Consensus 1 m~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~l~a~~----n---~l~~~v~eal~~~l-~~~~~~g~~~~~~~~~~~~ 70 (1342)
|..+-+++...++. +........... .+.|+|..|. + +.++.+.+++. .+ .... ...|+...+
T Consensus 1 ~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~I~l~~G~~~d~~~~~~~~~~v~~a~~-~~~~~~~------~~~Y~~~~G 73 (405)
T 3k7y_A 1 MDKLLSSLENIEVDNILKTAREFKEDTCEEKINLSIGVCCNDDGDLHIFDSVLNADK-LVTENYK------EKPYLLGNG 73 (405)
T ss_dssp CCCGGGGCCCCCCCHHHHHHHHHTTSSCSSCEECSCSSCBCTTSSBCCCHHHHHHHH-HHHHHCC------CCCCCTTSS
T ss_pred CcchhhcCCCCCCChHHHHHHHHhcCCCcCcEEeeeeeeECCCCCCcccHHHHHHHH-HhcCCCC------CCCCCCCCC
Confidence 43344566666654 444443332222 3568887774 2 23455777755 32 1111 123555666
Q ss_pred HHHHHHHHHHHHHHHhCCC----C-ceEecCCHHHHHHHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEE
Q psy13354 71 IDLIEKIAINRLKKIFNAE----A-ANVQPHSGSQANQAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSI 143 (1342)
Q Consensus 71 ~~~Le~~~~~~la~~~g~~----~-~vi~~~sGs~A~~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v 143 (1342)
..++++++.+++....+.. . .++.+.+|++|+..++.+++. | |+|+++++.++ .+...+...|. +++
T Consensus 74 ~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~~~-d~Vlv~~P~y~---~~~~~~~~~g~--~~~ 147 (405)
T 3k7y_A 74 TEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKMLNV-ETLYVTNPPYI---NHVNMIESRGF--NLK 147 (405)
T ss_dssp CHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTTTC-CEEEEESSCCH---HHHHHHHTTTC--EEE
T ss_pred cHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhcCC-CEEEEeCCCCH---hHHHHHHHcCC--eEE
Confidence 7799998888876544432 2 234454888899999999877 8 99997775554 44555677777 455
Q ss_pred EecC--CCCCCCCHHHHHHHHHhc-CCeEEEEcCC-CCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC--
Q psy13354 144 CYGL--NKKEKIDYKKVEYLAKKN-KPKLIIAGAS-AYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE-- 212 (1342)
Q Consensus 144 ~~~~--~~~~~id~e~Le~~i~~~-~~~liv~~~s-~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~-- 212 (1342)
++++ ++++.+|++.+++.+++. ++++++++++ +|| +...+++|+++|++||++||+||+|....+....
T Consensus 148 ~v~~~~~~~~~~d~~~l~~~l~~~~~~~~i~l~~~~~NPTG~~~s~~~~~~l~~~~~~~~~~vi~De~Y~~l~~~~~~~~ 227 (405)
T 3k7y_A 148 YINFFDYNLIDINYDLFLNDLRNIPNGSSVILQISCYNPCSVNIEEKYFDEIIEIVLHKKHVIIFDIAYQGFGHTNLEED 227 (405)
T ss_dssp EECCEETTTTEECHHHHHHHHHHSCSSCEEEECCSSCTTTCCCCCHHHHHHHHHHHHHHCCEEEEEESCTTTSSSSTTGG
T ss_pred EEeccccccCCcCHHHHHHHHHhCCCCeEEEEeCCCCCCCCCCCCHHHHHHHHHHHHHCCeEEEEecCcccccCCCcccc
Confidence 5554 245889999999999763 3467777553 566 3336889999999999999999998754332100
Q ss_pred CCC-----CCCCCcEEEecCCccCCCCCe---eEEEE---echhHHHHhhc---cCCccccCCcHHHHHHHHHHHHHh--
Q psy13354 213 YPN-----PVPFADFITSTTHKSLRGPRG---GFILM---KKKYKKIINSA---VFPGIQGGPLMHVIAAKAVAFKEV-- 276 (1342)
Q Consensus 213 ~~~-----~l~~~Divv~S~sK~l~gp~G---G~iv~---~~~l~~~l~~~---~~~~~~~~~~~~~~~Aaa~al~~~-- 276 (1342)
... ......++++||||+| +++| ||+++ ++++++.+... .....+++++...+.+++.++.+.
T Consensus 228 ~~~~~~~~~~~~~~i~~~S~SK~~-~l~GlRiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~l 306 (405)
T 3k7y_A 228 VLLIRKFEEKNIAFSVCQSFSKNM-SLYGERAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTNRILCQLLNNQNL 306 (405)
T ss_dssp GHHHHHHHTTTCCEEEEEECTTTS-CCTTTTEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHCHHH
T ss_pred hHHHHHHHhcCCcEEEEeeCCccC-CCccccceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHHHHHHHHhCCHHH
Confidence 000 0111247889999999 7677 99865 44554443211 011122334444444444443321
Q ss_pred ---ccchHHHHHHHHHHHHHHHHHHHH----hCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeecc
Q psy13354 277 ---LKPDFKIYQKQVVKNAKILSKILD----QRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNS 345 (1342)
Q Consensus 277 ---l~~~~~~~~~~l~~~a~~l~~~L~----~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~ 345 (1342)
..++++.+++++.++++.+.+.|. +.| +.+. .+.+++++|+.++. +++..+ +++||.+.|.
T Consensus 307 ~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~~~~~~~~-~p~gg~f~~~~l~~-----~~~~~L-~~~gV~v~p~- 378 (405)
T 3k7y_A 307 KLNWIKELSQLSQRITNNRILFFNKLETYQKKYNLNYDWNVY-KKQRGLFSFVPLLA-----KIAEHL-KTHHIYIINN- 378 (405)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCGGGG-SSCCSSEEECGGGG-----GGTTTT-TTTTEECCTT-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCCccc-cCCceEEEecCCCH-----HHHHHH-HHCCEeecCC-
Confidence 122456677889999999999999 776 3432 45678899987653 445566 7889998752
Q ss_pred CCCCCCCccccccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
-|++++..+..
T Consensus 379 -------------~Ris~a~~~~~ 389 (405)
T 3k7y_A 379 -------------GRINVSGITKN 389 (405)
T ss_dssp -------------SEEEGGGCCTT
T ss_pred -------------CeEEEeccCHH
Confidence 28888765443
No 179
>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}
Probab=99.74 E-value=2.8e-17 Score=198.07 Aligned_cols=315 Identities=14% Similarity=0.075 Sum_probs=186.5
Q ss_pred ccccccchH-HHHHHHHHHHhc-cCceeeeecC--CCC-cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHH
Q psy13354 6 ENLSKIDPK-IWEIILKEKQRQ-NNNIELIASE--NYT-SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAIN 80 (1342)
Q Consensus 6 ~~~~~~~~~-~~~~~~~~~~~~-~~~i~l~a~~--n~l-~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~ 80 (1342)
+++...+|. +........... .+.|+|..+. ++. ++.+.+++.++.. .....|....+..++++++++
T Consensus 18 ~~~~~~~~~~i~~~~~~~~~~~~~~~i~l~~g~~~d~~~~~~v~~a~~~a~~-------~~~~~y~~~~g~~~lr~~ia~ 90 (409)
T 4eu1_A 18 GPGSMGKPDPILGLGQDFRMDPAKRKVNLSIGVYRDDADQPFVLECVKQATL-------GTNMDYAPVTGIASFVEEAQK 90 (409)
T ss_dssp ---------CHHHHHHHHHHCCCSSCEECCCSSCCCTTSCCCCCHHHHTCCC-------CSCCCCCCTTCCHHHHHHHHH
T ss_pred hcCCCCCCChHHHHHHHHhhCCCcCceeeeeeEEECCCCCEeecHHHHhcCc-------cccccCCCCCCcHHHHHHHHH
Confidence 455555554 444444333322 3457777665 332 2336666555411 111224444455677775555
Q ss_pred HHHHHhCCC------Cce--EecCCHHHHHHHH---HHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecC--
Q psy13354 81 RLKKIFNAE------AAN--VQPHSGSQANQAV---FFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL-- 147 (1342)
Q Consensus 81 ~la~~~g~~------~~v--i~~~sGs~A~~~a---l~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~-- 147 (1342)
++ .|.. +.+ ..+.+|+.|+..+ +.+++++||+|++..+.++ .+...+...|.. ++.++.
T Consensus 91 ~~---~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~~~~gd~Vlv~~p~y~---~~~~~~~~~g~~--~~~~~~~~ 162 (409)
T 4eu1_A 91 LC---FGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRFVANCNRIYGPDVGYP---NHESIFAKAGME--LTPYSYYD 162 (409)
T ss_dssp HH---HCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGTSSSCCEEEEESSCCT---HHHHHHHHTTCE--EEEECCEE
T ss_pred HH---cCCCchhhccCceeeeecccchHHHHHHHHHHHHhcCCCCEEEEeCCCcH---hHHHHHHHcCCe--EEEEEeec
Confidence 54 2433 222 2244778887765 4456789999997775544 445555667774 455554
Q ss_pred CCCCCCCHHHHHHHHHh--cCCeEEEEcCCCCC--ccc---CHHHHHHHHHHcCCEEEEEcccchhhhhcC--CCCC---
Q psy13354 148 NKKEKIDYKKVEYLAKK--NKPKLIIAGASAYS--QYI---DFERFYHIAKNINSYFMVDMAHYAGLIAAG--EYPN--- 215 (1342)
Q Consensus 148 ~~~~~id~e~Le~~i~~--~~~~liv~~~s~~~--~~~---~l~~I~~la~~~gi~LIvDea~~~g~~~~~--~~~~--- 215 (1342)
++++.+|++++++.+++ .+++++++++++|| ... ++++|+++|++||++||+||+|..+.+... ....
T Consensus 163 ~~~~~~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~~~~~l~~i~~~~~~~~~~li~De~y~~~~~~~~~~~~~~~~~ 242 (409)
T 4eu1_A 163 PATKGLNLAGMLECLDKAPEGSVILVHACAHNPTGVDPTHDDWRQVCDVIKRRNHIPFVDMAYQGFATGQLDYDAFVPRH 242 (409)
T ss_dssp TTTTEECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHTTCEEEEEESCTTTTTSCHHHHTHHHHH
T ss_pred CcCCcCcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCCCHHHHHHHHHHHHhCCcEEEEeccccccccCCcccchHHHHH
Confidence 45678999999999974 34566776777776 222 477799999999999999999875443210 0000
Q ss_pred --CCCCCcEEEecCCccCCCCCe---eEE--E-Eech----hHHHHhhccCCccccCCcHHHHHHHHHHHHHh-----cc
Q psy13354 216 --PVPFADFITSTTHKSLRGPRG---GFI--L-MKKK----YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LK 278 (1342)
Q Consensus 216 --~l~~~Divv~S~sK~l~gp~G---G~i--v-~~~~----l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~ 278 (1342)
......++++|+||++ |+.| ||+ + .+++ +++.+....... ..+++...+.++..++... ..
T Consensus 243 ~~~~~~~~i~~~S~SK~~-g~~G~riG~~~~v~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 320 (409)
T 4eu1_A 243 LVDMVPNLIVAQSFSKNF-GLYGHRCGALHISTASAEEAKRLVSQLALLIRPM-YNNPPLYGAWVVSSILKDPQLTALWK 320 (409)
T ss_dssp HHTTSSCCEEEEECTTTS-SCGGGCCEEEEEECSSHHHHHHHHHHHHHHHHHH-HSSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred HHhhCCcEEEEecCcccc-cCccCCceEEEEEeCCHHHHHHHHHHHHHHHhhh-cCCCChHHHHHHHHHhCCHHHHHHHH
Confidence 0111247889999999 7667 996 4 5556 555555432222 2233344555544444321 02
Q ss_pred chHHHHHHHHHHHHHHHHHHHHhCC----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 279 PDFKIYQKQVVKNAKILSKILDQRG----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 279 ~~~~~~~~~l~~~a~~l~~~L~~~g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+..++.++++.++++++.+.|.+.| +.+.. +.++++.|+.+ +.+++..+++++||.+.+
T Consensus 321 ~~~~~~~~~~~~~~~~l~~~L~~~g~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~ll~~~gv~v~p 383 (409)
T 4eu1_A 321 KELKQMSSRIAEVRKRLVSELKACGSVHDWSHIE-RQVGMMAYTGL-----TREQVELLRSEYHIYMTL 383 (409)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHH-HSCSSEEECCC-----CHHHHHHHHHHHCEECCT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCCCcceec-CCceEEEEeCC-----CHHHHHHHHHcCCEEEcC
Confidence 2466788899999999999999987 44432 45567777543 357788888888999874
No 180
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.74 E-value=1e-16 Score=187.43 Aligned_cols=211 Identities=22% Similarity=0.299 Sum_probs=164.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHc----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDK----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
..+|+++++|+.|++++||+.+++.+...+.. +..++.++|+||+|+||||+++++++.+++.
T Consensus 12 ~~~~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~------------- 78 (334)
T 1in4_A 12 YDSGVQFLRPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTN------------- 78 (334)
T ss_dssp -----CTTSCSSGGGCCSCHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCC-------------
T ss_pred HHHHHHHcCCccHHHccCcHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCC-------------
Confidence 44789999999999999999999998888764 3455669999999999999999999999742
Q ss_pred CCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP------ 527 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~------ 527 (1342)
+...++.......++..+... ...+.|++|||++.+.....+.|+..++...
T Consensus 79 ----------------~~~~sg~~~~~~~~l~~~~~~------~~~~~v~~iDE~~~l~~~~~e~L~~~~~~~~~~i~~~ 136 (334)
T 1in4_A 79 ----------------IHVTSGPVLVKQGDMAAILTS------LERGDVLFIDEIHRLNKAVEELLYSAIEDFQIDIMIG 136 (334)
T ss_dssp ----------------EEEEETTTCCSHHHHHHHHHH------CCTTCEEEEETGGGCCHHHHHHHHHHHHTSCCCC---
T ss_pred ----------------EEEEechHhcCHHHHHHHHHH------ccCCCEEEEcchhhcCHHHHHHHHHHHHhcccceeec
Confidence 112222222222344443322 2345799999999998877788877765431
Q ss_pred ------------CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcH
Q psy13354 528 ------------KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSM 594 (1342)
Q Consensus 528 ------------~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~l 594 (1342)
+.+.++.+++.+..+...+++|+ ..+.|.+++.+++.+++++.++..++.++++++..|++.++|++
T Consensus 137 ~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~~ 216 (334)
T 1in4_A 137 KGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTP 216 (334)
T ss_dssp ------------CCCEEEEEESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTCH
T ss_pred cCcccccccccCCCeEEEEecCCcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCCh
Confidence 23567778888889999999999 67899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 595 RDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 595 r~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
|.++++|+++..++ .+.||.++|++++..
T Consensus 217 R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~ 249 (334)
T 1in4_A 217 RIAIRLTKRVRDMLTVVKADRINTDIVLKTMEV 249 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 99999999887665 346999999988754
No 181
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Probab=99.74 E-value=8.3e-17 Score=198.55 Aligned_cols=287 Identities=12% Similarity=0.071 Sum_probs=186.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCC----------ceEecCCHHHHHHHHHHHccCC---------CC--------E--
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEA----------ANVQPHSGSQANQAVFFSVLNP---------GD--------T-- 115 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~----------~vi~~~sGs~A~~~al~al~~p---------GD--------~-- 115 (1342)
|...+...++|+++++++++++|.+. ..++++|||+|+..++.++..+ || .
T Consensus 105 ~~~~~~~~~le~~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~~~~~~~~~gd~~~~~~~~~~~ 184 (486)
T 1js3_A 105 WAASPACTELETVMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLV 184 (486)
T ss_dssp GGGCHHHHHHHHHHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEE
T ss_pred cccChhHHHHHHHHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhhhhccCccchhcccCCCEE
Confidence 45567788999999999999999874 2456669999999998776321 43 3
Q ss_pred EEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCC-----eEEEEcCCCCC--cccCHHHHHH
Q psy13354 116 IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKP-----KLIIAGASAYS--QYIDFERFYH 188 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~-----~liv~~~s~~~--~~~~l~~I~~ 188 (1342)
|+++. +.|.+....+...|.. ++.++.+++|.+|+++|++++++.+. .+++++.++++ ...|+++|++
T Consensus 185 v~~s~---~~h~s~~~~~~~~G~~--v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~l~~I~~ 259 (486)
T 1js3_A 185 AYASD---QAHSSVERAGLIGGVK--LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDNLLEVGP 259 (486)
T ss_dssp EEEET---TCCHHHHHHHHHHTCE--EEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHH
T ss_pred EEECC---CCcHHHHHHHHhCCCc--eEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCCHHHHHH
Confidence 55455 4455666666777874 55556677899999999999976542 35555554433 5569999999
Q ss_pred HHHHcCCEEEEEcccchhhhhcCCCCC---CCCCCcEEEecCCccCCCCCe-eEEEEechh--HHHHhhccCCcccc---
Q psy13354 189 IAKNINSYFMVDMAHYAGLIAAGEYPN---PVPFADFITSTTHKSLRGPRG-GFILMKKKY--KKIINSAVFPGIQG--- 259 (1342)
Q Consensus 189 la~~~gi~LIvDea~~~g~~~~~~~~~---~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l--~~~l~~~~~~~~~~--- 259 (1342)
+|++||+||++|+||+.+.+....+.. .+..+|++++++||++++|.| |++++++.. .+.+.. ...+..+
T Consensus 260 la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~~~G~l~~~~~~~l~~~~~~-~~~yl~~~~~ 338 (486)
T 1js3_A 260 ICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNFDCSAMWVKRRTDLTGAFKL-DPVYLKHSHQ 338 (486)
T ss_dssp HHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCSSCEEEEESCHHHHHGGGC------------
T ss_pred HHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCcceEEEEEeCHHHHHHHhcC-CchhhCCCcc
Confidence 999999999999999877653222211 123479999999999977767 999987642 232211 0011000
Q ss_pred --------------CCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCC-
Q psy13354 260 --------------GPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNK- 323 (1342)
Q Consensus 260 --------------~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~- 323 (1342)
.+......++.+++.....+++++..++..++++++.+.|.+. |+++..++ ..+++.+.+++.
T Consensus 339 ~~~~~~~~~~~~~~~~rr~~~~~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~~~~~-~~~~v~f~~~~~~ 417 (486)
T 1js3_A 339 GSGLITDYRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQDPRFEVCAEV-TLGLVCFRLKGSD 417 (486)
T ss_dssp -CCSCCCGGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTEEECSCC-CSSEEEEEESSCH
T ss_pred cccCCCCccccCCCCCCchhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCeEEeCCC-ceeEEEEEecChH
Confidence 0000112333444443444578888999999999999999986 78886533 345566666532
Q ss_pred CCCHHHHHHHHHHCCc-eeeeccCCCCCCCcccccccccccccc
Q psy13354 324 KITGKIAESILESANI-ICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI-~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
..+.++...+.++ |+ ++.+..+. +...+|++++..
T Consensus 418 ~~~~~l~~~L~~~-g~~~~~~~~~~-------~~~~lRi~~~~~ 453 (486)
T 1js3_A 418 GLNEALLERINSA-RKIHLVPCRLR-------GQFVLRFAICSR 453 (486)
T ss_dssp HHHHHHHHHHHHH-TSCBCEEEEET-------TEEEEEEECCCT
T ss_pred HHHHHHHHHHHhc-CCEEEEEEEEC-------CEEEEEEEeCCC
Confidence 1235666666666 64 44433211 145799997544
No 182
>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*
Probab=99.74 E-value=1.6e-17 Score=196.24 Aligned_cols=309 Identities=13% Similarity=0.082 Sum_probs=195.5
Q ss_pred ceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCC---cchHHHHHHHHHHHHHHHhCCC--CceEecCCH-HHHH
Q psy13354 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG---CKFIDLIEKIAINRLKKIFNAE--AANVQPHSG-SQAN 102 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~---~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sG-s~A~ 102 (1342)
.+.+.+++..+|+.+++++.+.+.+ + ..++...|.. .....++.+++++++++++|.+ +.+++++|+ ++|+
T Consensus 4 ~~~~~~g~~~~p~~v~~a~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al 80 (360)
T 1w23_A 4 VFNFNAGPSALPKPALERAQKELLN-F--NDTQMSVMELSHRSQSYEEVHEQAQNLLRELLQIPNDYQILFLQGGASLQF 80 (360)
T ss_dssp CEECCSSSCCCCHHHHHHHHHTSSS-S--TTSSSCGGGSCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred eEeecCCCcCCCHHHHHHHHHHhhh-h--ccccccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEECCcchHHH
Confidence 3566777888888899998887742 2 1122222211 3344556677888999999986 355555466 8999
Q ss_pred HHHHHHccCC---CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHH-HHHhcCCeEEEEcCCCC
Q psy13354 103 QAVFFSVLNP---GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEY-LAKKNKPKLIIAGASAY 177 (1342)
Q Consensus 103 ~~al~al~~p---GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~-~i~~~~~~liv~~~s~~ 177 (1342)
..++.+++.+ ||.|++..+ .+.+. ......| .+..+ +.++ ++.+|++++++ .+++ ++++++++++++
T Consensus 81 ~~~~~~l~~~~~~g~~vi~~~~---~~~~~-~~~~~~g-~~~~v--~~~~~~~~~d~~~l~~~~i~~-~~k~v~~~~~~n 152 (360)
T 1w23_A 81 TMLPMNLLTKGTIGNYVLTGSW---SEKAL-KEAKLLG-ETHIA--ASTKANSYQSIPDFSEFQLNE-NDAYLHITSNNT 152 (360)
T ss_dssp HHHHHHHCCTTCEEEEEECSHH---HHHHH-HHHHTTS-EEEEE--EECGGGTSCSCCCGGGCCCCT-TEEEEEEESEET
T ss_pred HHHHHHhcCCCCcccEEEecch---hHHHH-HHHHHhC-CeEEe--ecccccCcCCccchHhhccCC-CCCEEEEeCCCC
Confidence 9999999866 445553332 23221 2234456 54444 5443 55578888887 7644 456666655554
Q ss_pred C-ccc-CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-
Q psy13354 178 S-QYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV- 253 (1342)
Q Consensus 178 ~-~~~-~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~- 253 (1342)
+ +.. + +++++||++||+|++|+.+... . .+...|++++|+||++ |+.| |++++++++++.+....
T Consensus 153 ptG~~~~-----~i~~~~~~~li~D~a~~~~~~~----~-~~~~~di~~~s~sK~~-~~~G~G~~~~~~~~~~~~~~~~~ 221 (360)
T 1w23_A 153 IYGTQYQ-----NFPEINHAPLIADMSSDILSRP----L-KVNQFGMIYAGAQKNL-GPSGVTVVIVKKDLLNTKVEQVP 221 (360)
T ss_dssp TTTEECS-----SCCCCCSSCEEEECTTTTTSSC----C-CGGGCSEEEEETTTTT-SCTTCEEEEEEHHHHCSCCTTCC
T ss_pred Ccceecc-----cccccCCceEEEechhhcCCCC----c-CcccCCEEEEEccccc-CCCCcEEEEEcHHHHhhcccCCc
Confidence 4 332 4 3334899999999999876431 1 1222389999999999 6888 99999988776554422
Q ss_pred ----------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-c-EEeeCC--CCCeEEEE
Q psy13354 254 ----------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-I-RIVSGG--TKSHIILV 318 (1342)
Q Consensus 254 ----------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~-~~~~~~--~~~~~v~i 318 (1342)
..+..++++...+.++..++...... +++++.+++.++++++.+.|.+.+ + .....+ ..++++|+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~ 301 (360)
T 1w23_A 222 TMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIKDLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTF 301 (360)
T ss_dssp GGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEE
T ss_pred chhhhhhhhhccCCCCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHccCcccccCCchhccCcEEEE
Confidence 11223455555555555555443333 577888999999999999999876 4 543112 22458888
Q ss_pred EccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 319 DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 319 ~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+++.....++... +.++||.+.+...+ .+++|++++..++
T Consensus 302 ~~~~~~~~~~~~~~-l~~~gi~~~~~~~~--------~~~iRis~~~~~~ 342 (360)
T 1w23_A 302 NLRNEELNQQFLAK-AKEQGFVGLNGHRS--------VGGCRASIYNAVP 342 (360)
T ss_dssp ECSSHHHHHHHHHH-HHHTTEESCBCCTT--------TCSEEEECCTTSC
T ss_pred EcCCCccHHHHHHH-HHHCCeeeecCCCC--------CCeEEEEecCCCC
Confidence 88643222345555 45569998654221 3579999987655
No 183
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}
Probab=99.73 E-value=1.3e-16 Score=197.44 Aligned_cols=313 Identities=14% Similarity=0.108 Sum_probs=197.5
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc----c
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV----L 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al----~ 110 (1342)
...++.+++++.....+ .+...+...+...++|+.+++++++++|.+ ..+++++|||+|+..++.++ +
T Consensus 110 ~~~~~~v~~~~~~~~~n------~~~~~~~~~~~~~~le~~~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~ 183 (497)
T 2qma_A 110 PPLMPAVAAEAMIAALN------QSMDSWDQASSATYVEQKVVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIA 183 (497)
T ss_dssp CCBHHHHHHHHHHHHHC------CCTTCGGGCHHHHHHHHHHHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhhc------ccccchhhChHHHHHHHHHHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHH
Confidence 34455566666554432 112234455678899999999999999985 45666669999999998873 2
Q ss_pred ---------CC------CC-EEEEeeccCCccchhhHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHhc----C-Ce
Q psy13354 111 ---------NP------GD-TIMGMSLQEGGHLTHGMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKKN----K-PK 168 (1342)
Q Consensus 111 ---------~p------GD-~Vlv~~~~~~~~~s~~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~~----~-~~ 168 (1342)
.+ || .|+++.. .|.+....+...|.+. +++.++.++++.+|++++++.+.+. + +.
T Consensus 184 ~~~~~~~~~~~G~~~~~g~~~v~~s~~---~h~s~~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~ 260 (497)
T 2qma_A 184 DKLSGHSIQKLGLPDYADKLRIVCSKK---SHFTVQKSASWMGLGEKAVMTVDANADGTMDITKLDEVIAQAKAEGLIPF 260 (497)
T ss_dssp HHHHCCCHHHHCSCGGGGGEEEEEETT---SCTHHHHHHHHTTSCGGGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEE
T ss_pred HhhcccchhhcccccccCCeEEEECCC---chHHHHHHHHHcCCCcccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcce
Confidence 12 46 6775553 4445555556665533 3555577778999999999998764 2 33
Q ss_pred EEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC---CCCCCCcEEEecCCccCCCCCe-eEEEEe
Q psy13354 169 LIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP---NPVPFADFITSTTHKSLRGPRG-GFILMK 242 (1342)
Q Consensus 169 liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~---~~l~~~Divv~S~sK~l~gp~G-G~iv~~ 242 (1342)
+++++.++++ ...|+++|+++|++||+||++|++|+.+..... +. ..+..+|++++|+|||+++|.| |+++++
T Consensus 261 ~vv~~~~~~~tG~~~~l~~I~~l~~~~~~~l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~~~G~l~~~ 339 (497)
T 2qma_A 261 AIVGTAGTTDHGAIDDLDFIADMAVKHDMWMHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTISCGALLVN 339 (497)
T ss_dssp EEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCSSCEEEEES
T ss_pred EEEEcCCCCCCCCCCCHHHHHHHHHHcCCEEEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCcceEEEEEe
Confidence 5555444443 556999999999999999999999987765332 11 1123479999999999978877 888887
Q ss_pred ch-hHHHHhhccCCccccCC---cHHH-----------HHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEE
Q psy13354 243 KK-YKKIINSAVFPGIQGGP---LMHV-----------IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRI 306 (1342)
Q Consensus 243 ~~-l~~~l~~~~~~~~~~~~---~~~~-----------~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~ 306 (1342)
++ ..+.+.. ...+..+.. ..+. ..++..++..+..+++++..++..++++++.+.|.+. ++++
T Consensus 340 ~~~~~~~~~~-~~~yl~~~~~~~~~~~~~~~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~~~~~ 418 (497)
T 2qma_A 340 DKSNFKFLLH-HADYLNREHDELPNLVDKSIATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTNDQFEL 418 (497)
T ss_dssp CGGGGGGGCC---------------------CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred CHHHHHHhcC-CchhcCCccccCCCccccCCCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhCCCeEE
Confidence 54 3333321 111111110 0000 1223334444444577788899999999999999985 7887
Q ss_pred eeCCCCCeEEEEEccCCCCC-----HHHHHHHHHHCCceeeeccCCCCCCCccccccccccc-ccccc
Q psy13354 307 VSGGTKSHIILVDLRNKKIT-----GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS-SAITT 368 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~~~~-----~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~-~~~~t 368 (1342)
+.+ +..+++++.+.+.... .++...+.++ |+.+.+...+ .+ .+.+|+++ +..++
T Consensus 419 ~~~-~~~~~v~f~~~~~~~~~~~l~~~l~~~l~~~-G~~~~~~~~~---~g---~~~lRis~~~~~~t 478 (497)
T 2qma_A 419 LAE-PSLSTVLFRATHETADLDELNKALRLEALTR-GIAVLGETIV---DG---KTALKFTILNPCLT 478 (497)
T ss_dssp CSC-CSSSEEEEEECCSSSCHHHHHHHHHHHHHHH-TSCBCEEEEE---TT---EEEEEEECCCTTCC
T ss_pred EcC-CCceEEEEEEcCCccCHHHHHHHHHHHHHhC-CCEEEEeeEE---CC---EEEEEEEecCCCCC
Confidence 543 3456777777543211 2344555555 8877542211 11 35799998 55544
No 184
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}
Probab=99.73 E-value=2.5e-16 Score=195.63 Aligned_cols=250 Identities=13% Similarity=0.081 Sum_probs=168.0
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-------C-CCC------EEEEeeccCCccchh
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL-------N-PGD------TIMGMSLQEGGHLTH 129 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~-------~-pGD------~Vlv~~~~~~~~~s~ 129 (1342)
+...+...++++++++++++++|.+ ..+++++|||+|+..++.++. . +|| .|+++... |.+.
T Consensus 140 ~~~s~~~~~le~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~---h~s~ 216 (515)
T 2jis_A 140 YEIAPVFVLMEEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKEC---HYSI 216 (515)
T ss_dssp TTTCHHHHHHHHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTS---CTHH
T ss_pred hhhchHHHHHHHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCc---cHHH
Confidence 4445677789999999999999987 455666699999999888763 2 575 77766644 4445
Q ss_pred hHHhhhCCcee-EEEEecCCCCCCCCHHHHHHHHHhc-----CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEc
Q psy13354 130 GMMLNMSGKWF-NSICYGLNKKEKIDYKKVEYLAKKN-----KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDM 201 (1342)
Q Consensus 130 ~~~~~~~g~~~-~~v~~~~~~~~~id~e~Le~~i~~~-----~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDe 201 (1342)
...+...|.+. +++.++.++++.+|++++++++.+. ++++|+++.++++ ...|+++|+++|++||+|+++|+
T Consensus 217 ~~~~~~~g~g~~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~l~~I~~la~~~g~~l~vD~ 296 (515)
T 2jis_A 217 QKGAAFLGLGTDSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDPLEAIADVCQRHGLWLHVDA 296 (515)
T ss_dssp HHHHHHTTSCGGGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCCHHHHHHHHHHHTCEEEEEE
T ss_pred HHHHHHcCCCCCcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccCHHHHHHHHHHcCCeEEEeh
Confidence 55555666533 4555577778999999999999763 3566666555443 45699999999999999999999
Q ss_pred ccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe-eEEEEech--hHHHHhhccCCcccc------------CC--
Q psy13354 202 AHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG-GFILMKKK--YKKIINSAVFPGIQG------------GP-- 261 (1342)
Q Consensus 202 a~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G-G~iv~~~~--l~~~l~~~~~~~~~~------------~~-- 261 (1342)
+|+.+......+...+ ..+|++++|+|||+++|.| |+++++++ +.+.......++..+ +.
T Consensus 297 a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~~~ 376 (515)
T 2jis_A 297 AWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGLQCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDKVV 376 (515)
T ss_dssp TTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCSCCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGGCS
T ss_pred hhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCCCeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCCCC
Confidence 9988776433222112 2479999999999977887 99998876 655422111111100 00
Q ss_pred -c--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEE
Q psy13354 262 -L--MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIIL 317 (1342)
Q Consensus 262 -~--~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~ 317 (1342)
. .....++.+++..+..++++++.++..++++++.+.|.+. |+++..++....+.+
T Consensus 377 ~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~g~~~~~~~~~~~v~f 436 (515)
T 2jis_A 377 QCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKREGFELVMEPEFVNVCF 436 (515)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTEEESSCCSSSEEEE
T ss_pred CCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCeeEEEE
Confidence 0 0001122222333333467888899999999999999986 888866443344333
No 185
>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*
Probab=99.73 E-value=3.7e-17 Score=195.75 Aligned_cols=307 Identities=12% Similarity=0.065 Sum_probs=189.5
Q ss_pred CceeeeecC----C---CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEe--cCCH
Q psy13354 28 NNIELIASE----N---YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQ--PHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~----n---~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~--~~sG 98 (1342)
+.+++..+. + +.++.+.+++.+.+.... ...|+...+..++++++++++.......+.+++ ++||
T Consensus 27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~ 100 (394)
T 2ay1_A 27 GKIDLGVGVYKDATGHTPIMRAVHAAEQRMLETET------TKTYAGLSGEPEFQKAMGELILGDGLKSETTATLATVGG 100 (394)
T ss_dssp TCEECCCCSCCCTTSCCCCCHHHHHHHHHHHHHCC------CCCCCCSSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHH
T ss_pred cccccccceeeCCCCCccCcHHHHHHHHHhcCCcc------cCCCCCCCCcHHHHHHHHHHHhCCCCCcccEEEEecCCc
Confidence 457777765 1 234668888877664311 112333344557777555544221001244554 5589
Q ss_pred HHHHHHHHHHcc--CCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEEEcC
Q psy13354 99 SQANQAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLIIAGA 174 (1342)
Q Consensus 99 s~A~~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv~~~ 174 (1342)
++|+..++.++. .+||+|++..+.+++ ....+...|..+..+++..++++.+|++++++.+++. ...++++++
T Consensus 101 ~~a~~~~~~~~~~~~~gd~vl~~~p~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~ 177 (394)
T 2ay1_A 101 TGALRQALELARMANPDLRVFVSDPTWPN---HVSIMNFMGLPVQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGC 177 (394)
T ss_dssp HHHHHHHHHHHHHHCTTCCEEEEESCCHH---HHHHHHHHTCCEEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESS
T ss_pred hhHHHHHHHHHHhcCCCCEEEEcCCCChh---HHHHHHHcCCceEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCC
Confidence 999999998774 499999987755543 4444555676544444332256778999999999864 245666677
Q ss_pred CCCC-cc----cCHHHHHHHHHHcCCEEEEEcccchhhhhc---CCCCCCC---CCCcEEEecCCccCCCCCe---eEEE
Q psy13354 175 SAYS-QY----IDFERFYHIAKNINSYFMVDMAHYAGLIAA---GEYPNPV---PFADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 175 s~~~-~~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~---~~~~~~l---~~~Divv~S~sK~l~gp~G---G~iv 240 (1342)
++|| +. .++++|+++|++||++||+||+|+.+.... ......+ ....++++|+||++ |+.| ||++
T Consensus 178 ~~nptG~~~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG~~~ 256 (394)
T 2ay1_A 178 CHNPTGANLTLDQWAEIASILEKTGALPLIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNF-GIYRERTGCLL 256 (394)
T ss_dssp SCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTT-TCGGGCEEEEE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCC-cCcCCccceEE
Confidence 6666 22 257889999999999999999997543311 0000001 11247789999999 6666 9999
Q ss_pred E---echhHHH----HhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhCC----c
Q psy13354 241 M---KKKYKKI----INSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQRG----I 304 (1342)
Q Consensus 241 ~---~~~l~~~----l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~g----~ 304 (1342)
+ ++++++. +..... ..+++++...+.++..++... ..++.++..+++.++++++.+.|.+.+ +
T Consensus 257 ~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~ 335 (394)
T 2ay1_A 257 ALCADAATRELAQGAMAFLNR-QTYSFPPFHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSDRF 335 (394)
T ss_dssp EECSSHHHHHHHHHHHHHHHH-TTTSSCCCHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSTT
T ss_pred EEeCCHHHHHHHHHHHHHHHh-hhcCCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCe
Confidence 8 5554333 321111 122223344444444443321 123677788899999999999998764 5
Q ss_pred EEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
.+.. +..++++|+.++ .+.+..+++++||.+.+ ++|++++.
T Consensus 336 ~~~~-~~~g~~~~~~~~-----~~~~~~~l~~~gi~v~~--------------~~Ris~~~ 376 (394)
T 2ay1_A 336 GFVA-EHRGMFSRLGAT-----PEQVKRIKEEFGIYMVG--------------DSRINIAG 376 (394)
T ss_dssp THHH-HCCSSEEECCCC-----HHHHHHHHHHHCEECCT--------------TCEEEGGG
T ss_pred eEEc-CCceEEEeeCCC-----HHHHHHHHHhCCEEecC--------------CCeEEeec
Confidence 5433 345677887653 35567777777999874 26998873
No 186
>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...
Probab=99.73 E-value=3.6e-17 Score=195.95 Aligned_cols=308 Identities=11% Similarity=0.084 Sum_probs=192.4
Q ss_pred CceeeeecC----C---CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCC---CCceEe--c
Q psy13354 28 NNIELIASE----N---YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNA---EAANVQ--P 95 (1342)
Q Consensus 28 ~~i~l~a~~----n---~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~---~~~vi~--~ 95 (1342)
+.+++..+. + +.++.+.+++.+.+.... ...|+...+..++++++++++....+. ++.+++ +
T Consensus 27 ~~i~l~~g~~~~~~~~~~~~~~v~~a~~~~~~~~~------~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~ 100 (396)
T 2q7w_A 27 GKINLGIGVYKDETGKTPVLTSVKKAEQYLLENET------TKNYLGIDGIPEFGRCTQELLFGKGSALINDKRARTAQT 100 (396)
T ss_dssp -CEESSCCSCCCTTSCCCCCHHHHHHHHHHHHHCC------CCCCCCTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEE
T ss_pred CceecccccccCCCCCccCcHHHHHHHHhhcCccc------ccCCCCCCCCHHHHHHHHHHHhcCCCCccccccEEEEec
Confidence 457777775 1 344678898877664211 112333444567777555555332221 234444 6
Q ss_pred CCHHHHHHHHHHHc--cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhc--CCeEEE
Q psy13354 96 HSGSQANQAVFFSV--LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKN--KPKLII 171 (1342)
Q Consensus 96 ~sGs~A~~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~--~~~liv 171 (1342)
+||++|+..++.++ +.+||+|++..+.+++ ....+...|..+..+++...+++.+|++++++.+.+. +.++++
T Consensus 101 ~g~~~a~~~~~~~~~~~~~gd~Vl~~~p~y~~---~~~~~~~~g~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~ 177 (396)
T 2q7w_A 101 PGGTGALRVAADFLAKNTSVKRVWVSNPSWPN---HKSVFNSAGLEVREYAYYDAENHTLDFDALINSLNEAQAGDVVLF 177 (396)
T ss_dssp SHHHHHHHHHHHHHHHHSCCCEEEEEESCCTH---HHHHHHHTTCEEEEEECEETTTTEECHHHHHHHHTTCCTTCEEEE
T ss_pred ccchhhHHHHHHHHHHhCCCCEEEEcCCCchh---HHHHHHHcCCceEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEE
Confidence 58999999998766 4699999987755544 4445566676444443322256778999999999764 246677
Q ss_pred EcCCCCC-c----ccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCC--C---CCCcEEEecCCccCCCCCe---e
Q psy13354 172 AGASAYS-Q----YIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNP--V---PFADFITSTTHKSLRGPRG---G 237 (1342)
Q Consensus 172 ~~~s~~~-~----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~--l---~~~Divv~S~sK~l~gp~G---G 237 (1342)
+++++|| + ..++++|+++|++||++||+||+|..+.+.. ....+. + ...+++++|+||++ |+.| |
T Consensus 178 ~~~p~nptG~~~~~~~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~-~~~G~riG 256 (396)
T 2q7w_A 178 HGCCHNPTGIDPTLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNF-GLYNERVG 256 (396)
T ss_dssp ECSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTT-TCGGGCCE
T ss_pred eCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEeccccc-cccccccc
Confidence 6777766 2 2257899999999999999999987543321 000000 1 11358899999999 7667 9
Q ss_pred EEEE---ec----hhHHHHhhccCCccccCCcHHHHHHHHHHHHHh-----ccchHHHHHHHHHHHHHHHHHHHHhCC--
Q psy13354 238 FILM---KK----KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV-----LKPDFKIYQKQVVKNAKILSKILDQRG-- 303 (1342)
Q Consensus 238 ~iv~---~~----~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~-----l~~~~~~~~~~l~~~a~~l~~~L~~~g-- 303 (1342)
|+++ ++ ++++.+..... ..+++++...+.++..++... ..++.++..+++.++++++.+.|.+.+
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~ 335 (396)
T 2q7w_A 257 ACTLVAADSETVDRAFSQMKAAIR-ANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGAN 335 (396)
T ss_dssp EEEEECSSHHHHHHHHHHHHHHHH-TTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCC
T ss_pred eEEEEcCCHHHHHHHHHHHHHHHh-hccCCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 9987 44 34544443211 123333455555544443221 123566778889999999999999876
Q ss_pred --cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 304 --IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 304 --~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
+++.. +..++++|+.++ .+.+..+++++||.+.+ ++|++++..
T Consensus 336 ~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~~~gv~v~~--------------~~Ris~~~~ 380 (396)
T 2q7w_A 336 RDFSFII-KQNGMFSFSGLT-----KEQVLRLREEFGVYAVA--------------SGRVNVAGM 380 (396)
T ss_dssp SCCTHHH-HCCSSEEECCCC-----HHHHHHHHHHHCEECCT--------------TCEEEGGGC
T ss_pred CCcceec-CCCceEEEecCC-----HHHHHHHHHhcCeeecC--------------CceEEEeec
Confidence 55433 345677777543 35677777777999974 269988753
No 187
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Probab=99.72 E-value=2.9e-16 Score=191.93 Aligned_cols=287 Identities=17% Similarity=0.174 Sum_probs=176.9
Q ss_pred cCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEE
Q psy13354 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC 144 (1342)
Q Consensus 65 ~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~ 144 (1342)
|.......++++ .+++++|.+++++++ ||++|+..++.++++||| +++...| +.+....+...|. +++.
T Consensus 71 y~~~~~~~~l~~----~la~~~~~~~~~~~~-~gt~a~~~al~~l~~~gd--i~~~~~~--~~~~~~~~~~~G~--~~~~ 139 (456)
T 2ez2_A 71 YAGSENFYHLER----TVQELFGFKHIVPTH-QGRGAENLLSQLAIKPGQ--YVAGNMY--FTTTRYHQEKNGA--VFVD 139 (456)
T ss_dssp SSSCHHHHHHHH----HHHHHHCCSEEEEES-SHHHHHHHHHHHHCCTTC--EEEESSC--CHHHHHHHHHTTC--EEEE
T ss_pred cccChhHHHHHH----HHHHHhCCCcEEEeC-CcHHHHHHHHHHhCCCCC--Eeccccc--cchhHHHHHHcCC--EEEE
Confidence 444555556665 888888987666555 999999999999999999 5455433 1233445566677 4455
Q ss_pred ecCCC----------CCCCCHHHHHHHHHhcC---CeEEEEcCCCC-C-c-ccC---HHHHHHHHHHcCCEEEEEcccch
Q psy13354 145 YGLNK----------KEKIDYKKVEYLAKKNK---PKLIIAGASAY-S-Q-YID---FERFYHIAKNINSYFMVDMAHYA 205 (1342)
Q Consensus 145 ~~~~~----------~~~id~e~Le~~i~~~~---~~liv~~~s~~-~-~-~~~---l~~I~~la~~~gi~LIvDea~~~ 205 (1342)
++.++ ++.+|++++++++++.+ .++++++++++ + + ..+ +++|+++|++||++||+||+|+.
T Consensus 140 v~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~~~~~l~~i~~la~~~~i~li~De~~~~ 219 (456)
T 2ez2_A 140 IVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCV 219 (456)
T ss_dssp CBCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred ecccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccCCHHHHHHHHHHHHHcCCeEEEEccccc
Confidence 55442 26789999999998755 36677765555 4 2 234 99999999999999999999987
Q ss_pred h---------hhhcCCCCC-----CCCCCcEEEecCCccCCCCCeeEEEE-echhHHHHhhccC---Cc-cccCCcHHHH
Q psy13354 206 G---------LIAAGEYPN-----PVPFADFITSTTHKSLRGPRGGFILM-KKKYKKIINSAVF---PG-IQGGPLMHVI 266 (1342)
Q Consensus 206 g---------~~~~~~~~~-----~l~~~Divv~S~sK~l~gp~GG~iv~-~~~l~~~l~~~~~---~~-~~~~~~~~~~ 266 (1342)
| ....+.... .....|+++.|++|+++.+.||++++ ++++++.+..... .+ .+.+.+....
T Consensus 220 g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (456)
T 2ez2_A 220 ENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDM 299 (456)
T ss_dssp HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSSCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHHH
T ss_pred cccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCCceeEEEECCHHHHHHHHHHHhhccCcccccCcchhHH
Confidence 5 222222110 01235888888899874344799998 5677776543211 11 1112222222
Q ss_pred HHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC---CCCCHHH-----HHHHHHHCC
Q psy13354 267 AAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN---KKITGKI-----AESILESAN 338 (1342)
Q Consensus 267 ~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~---~~~~~~~-----~~~ll~~~G 338 (1342)
.+++.++.+... +.+.++..++.+++.+.|.+.|+++.. +..++++|+.+.. .....++ ...+++++|
T Consensus 300 ~a~a~~~~~~~~---~~~~~~~~~~~~~l~~~L~~~g~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g 375 (456)
T 2ez2_A 300 EAMAIGLREAMQ---YEYIEHRVKQVRYLGDKLKAAGVPIVE-PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYVETG 375 (456)
T ss_dssp HHHHHHHHHHTC---HHHHHHHHHHHHHHHHHHHHTTCCBCS-SCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhH---HHHHHHHHHHHHHHHHHHhcCCCcccc-CCCceEEEEEhHHhcCCCChhhccHHHHHHHHHHhcC
Confidence 332344443331 345667777888999999887876543 4567888988742 1122233 555546679
Q ss_pred ceeeec-c--CCCCC---CC-cccccccccccccc
Q psy13354 339 IICNKN-S--IPNDP---EK-PYFTSGIRLGSSAI 366 (1342)
Q Consensus 339 I~v~~~-~--~p~~~---~~-~~~~~~lRi~~~~~ 366 (1342)
|.+.+. . .+..+ .. .-..+++|++++..
T Consensus 376 v~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~ 410 (456)
T 2ez2_A 376 VRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRR 410 (456)
T ss_dssp EECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred eeeecccccccccCccccccccCCCCeEEEEeCCC
Confidence 986542 1 11110 00 00125799998863
No 188
>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*
Probab=99.72 E-value=1.5e-16 Score=192.98 Aligned_cols=283 Identities=16% Similarity=0.158 Sum_probs=175.9
Q ss_pred CceeeeecC-CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHH
Q psy13354 28 NNIELIASE-NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAV 105 (1342)
Q Consensus 28 ~~i~l~a~~-n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~a 105 (1342)
..+.|..+. ...++.+++++.+.+...+ +++... |.......+....+++++++++|.+ +.+++++||++|+..+
T Consensus 18 ~~~~Ld~~~~~~~~~~v~~a~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~ 94 (432)
T 3a9z_A 18 RKVYMDYNATTPLEPEVIQAVTEAMKEAW--GNPSSS-YVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLV 94 (432)
T ss_dssp CCEECBTTTCCCCCHHHHHHHHHHHHHCC--SCTTCS-SHHHHHHHHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHH
T ss_pred CcEEeeCCccCCCCHHHHHHHHHHHHHhc--CCCccC-cHHHHHHHHHHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHH
Confidence 334454443 4567789999998885422 444322 2223334455667888999999986 5667776999999999
Q ss_pred HHHcc--------CCCCEEEEeeccCCcc----------chh---hH-HhhhCCceeEEEEecCCC-CCCCCHHHHHHHH
Q psy13354 106 FFSVL--------NPGDTIMGMSLQEGGH----------LTH---GM-MLNMSGKWFNSICYGLNK-KEKIDYKKVEYLA 162 (1342)
Q Consensus 106 l~al~--------~pGD~Vlv~~~~~~~~----------~s~---~~-~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i 162 (1342)
+.+++ ++||+|++..+.++.+ .+. +. .....|. +++.++.++ ++.+|++++++.+
T Consensus 95 ~~~~~~~~~~~~~~~gd~vl~~~p~y~~~~~i~~~~~~h~s~~~~~~~~~~~~g~--~v~~v~~~~~~~~~d~~~l~~~i 172 (432)
T 3a9z_A 95 IHSTVRCFHEQQTLQGRTVDQISPEEGTRPHFITCTVEHDSIRLPLEHLVEDQVA--EVTFVPVSKVNGQVEVEDILAAV 172 (432)
T ss_dssp HHHHHHHHHHHHHHC------------CCCEEEEETTCCHHHHHHHHHHHHTTSC--EEEEECCCTTTSSCCHHHHHHTC
T ss_pred HHHHHhhhhhccccCCccccccccccccCCeEEEecCcchhHHHHHHHHHHhcCc--EEEEEecCcccCCcCHHHHHHhc
Confidence 99886 5898887755544332 111 11 1233466 455556654 6789999999988
Q ss_pred HhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcC----------CEEEEEcccchhhhhcCCCCCCC-CCCcEEEecCCc
Q psy13354 163 KKNKPKLIIAGASAYS--QYIDFERFYHIAKNIN----------SYFMVDMAHYAGLIAAGEYPNPV-PFADFITSTTHK 229 (1342)
Q Consensus 163 ~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~g----------i~LIvDea~~~g~~~~~~~~~~l-~~~Divv~S~sK 229 (1342)
++ +++++++++++++ ...++++|.++|+++| ++||+|++|+.|.. ..... ..+|++++|+||
T Consensus 173 ~~-~~~~v~~~~~~nptG~~~~~~~i~~l~~~~~~~~~~~~~~~~~livDea~~~~~~----~~~~~~~~~d~~~~s~~K 247 (432)
T 3a9z_A 173 RP-TTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKR----RVDVEDLGVDFLTIVGHK 247 (432)
T ss_dssp CT-TEEEEECCSBCTTTCBBCCHHHHHHHHHHHHHHHHHHTCCCCEEEEECTTTTTTS----CCCHHHHCCSEEEEEGGG
T ss_pred cC-CceEEEEECcccCcccccCHHHHHHHHHhcCcccccccCCceEEEEEchhhhCCc----ccChhhcCCCEEEEehhH
Confidence 65 4677777776665 4559999999999999 99999999976532 11110 136899999999
Q ss_pred cCCCCCeeEEEEechh-HHHHhhccC------CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 230 SLRGPRGGFILMKKKY-KKIINSAVF------PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 230 ~l~gp~GG~iv~~~~l-~~~l~~~~~------~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
++ |+..|+++++++. ...+..... .+..++++.+.+.++..++... .+++++..+++.++++++.+.|.+.
T Consensus 248 ~~-g~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~aal~~~-~~~~~~~~~~~~~~~~~l~~~L~~~ 325 (432)
T 3a9z_A 248 FY-GPRIGALYVRGVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLV-SENCETYEAHMRDIRDYLEERLEAE 325 (432)
T ss_dssp TT-CCSCEEEEETTBTTTBCCCCSCCSSCGGGGTSCSCCCHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hc-CCcceEEEEccccccCCcCceeecCCccccccCCCcCHHHHHHHHHHHHHH-HhhHHHHHHHHHHHHHHHHHHHHhc
Confidence 98 7777999999865 222221110 1112344455555555454433 3367888899999999999999883
Q ss_pred -CcEEee-CC-----CCCeEEEEEccC
Q psy13354 303 -GIRIVS-GG-----TKSHIILVDLRN 322 (1342)
Q Consensus 303 -g~~~~~-~~-----~~~~~v~i~~~~ 322 (1342)
|+.+.. .+ ....++++.+.+
T Consensus 326 ~g~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (432)
T 3a9z_A 326 FGKRIHLNSRFPGVERLPNTCNFSIQG 352 (432)
T ss_dssp HGGGEEESSCCTTCCBCTTEEEEEECS
T ss_pred cCCcEEEeCCCCcccCCCCEEEEEeCC
Confidence 655432 11 112356666665
No 189
>3bb8_A CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartate aminotransferase fold, oxidoreductase; HET: PLP; 2.35A {Yersinia pseudotuberculosis} PDB: 3bcx_A
Probab=99.72 E-value=6.8e-16 Score=187.71 Aligned_cols=285 Identities=16% Similarity=0.118 Sum_probs=177.6
Q ss_pred cCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHc-----
Q psy13354 35 SENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSV----- 109 (1342)
Q Consensus 35 ~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al----- 109 (1342)
+.+.+++.+++++.+.+.. . ++.......++++ .+++++|.+++++++ ||++|+..++.++
T Consensus 37 ~~~~~~~~~~~a~~~~~~~-~--------~~~~~~~~~~l~~----~la~~~g~~~~i~~~-sGt~a~~~al~~l~~~~~ 102 (437)
T 3bb8_A 37 SGKVIGTKELQLMVEASLD-G--------WLTTGRFNDAFEK----KLGEYLGVPYVLTTT-SGSSANLLALTALTSPKL 102 (437)
T ss_dssp CCCCCCHHHHHHHHHHHHH-C--------CCBSCHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHTTCGGG
T ss_pred CCCCCCHHHHHHHHHHHHc-C--------CcCCChHHHHHHH----HHHHHHCCCcEEEeC-CHHHHHHHHHHHhhhccc
Confidence 4556778888998888742 1 1222334444444 889999988665555 9999999999998
Q ss_pred ----cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-CCCCCHHHHHHHHHhcCCeEEEEcCCCCCcccCHH
Q psy13354 110 ----LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184 (1342)
Q Consensus 110 ----~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~~~id~e~Le~~i~~~~~~liv~~~s~~~~~~~l~ 184 (1342)
+.+||+|+++...|+++ ...+...|. +++.++.++ ++.+|++++++.+++ ++++|++++ +++.+.+++
T Consensus 103 ~~~~~~~gd~Vi~~~~~~~~~---~~~~~~~g~--~~~~v~~~~~~~~~d~~~l~~~i~~-~~~~v~~~~-~~g~~~~~~ 175 (437)
T 3bb8_A 103 GVRALKPGDEVITVAAGFPTT---VNPTIQNGL--IPVFVDVDIPTYNVNASLIEAAVSD-KTKAIMIAH-TLGNLFDLA 175 (437)
T ss_dssp GGGSCCTTCEEEECSSSCHHH---HHHHHHTTC--EEEECCEETTTTEECGGGHHHHCCT-TEEEEEEEC-GGGCCCCHH
T ss_pred ccccCCCcCEEEECCCCcHHH---HHHHHHcCC--EEEEEeccCccCCcCHHHHHHhcCC-CCeEEEEeC-CCCChhcHH
Confidence 78999999777555443 444455676 455555553 688999999998865 456666542 222447999
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCC--ccCCCCCeeEEEEechhHHH-Hhh---ccCC---
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTH--KSLRGPRGGFILMKKKYKKI-INS---AVFP--- 255 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~s--K~l~gp~GG~iv~~~~l~~~-l~~---~~~~--- 255 (1342)
+|.++|+++|++||+|++|+.|....+.... ...|+++.||+ |.++++.||+++++++.+.. +.. ....
T Consensus 176 ~i~~l~~~~~~~li~D~a~~~g~~~~~~~~~--~~~d~~~~s~~~~k~l~~g~gg~~~~~~~~~~~~~~~~~~~~~~~~~ 253 (437)
T 3bb8_A 176 EVRRVADKYNLWLIEDCCDALGSTYDGKMAG--TFGDIGTVSFYPAKHITMGEGGAVFTQSAELKSIIESFRDWGRDCYC 253 (437)
T ss_dssp HHHHHHHHHTCEEEEECTTCTTCEETTEETT--SSSSEEEEECSTTSSSCCSSCEEEEESCHHHHHHHHHHHBTTBCC--
T ss_pred HHHHHHHHcCCEEEEECccccCceECCeecc--cccCEEEEECcCCcCCCCCCeEEEEeCCHHHHHHHHHHHHhCccccc
Confidence 9999999999999999999877654222111 12588878764 55656667999998654333 221 1100
Q ss_pred ----------------------c---------cccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-C
Q psy13354 256 ----------------------G---------IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-G 303 (1342)
Q Consensus 256 ----------------------~---------~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g 303 (1342)
+ .++....+..++++.+..+. +.+..++..++++++.+.|.+. |
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~----~~~~~~~~~~~~~~l~~~L~~~~g 329 (437)
T 3bb8_A 254 APGCDNTCKKRFGQQLGSLPFGYDHKYTYSHLGYNLKITDMQAACGLAQLER----IEEFVEKRKANFKYLKDALQSCAD 329 (437)
T ss_dssp --------------CCSCCCTTCCGGGCBCSCCCBCCCBHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHGGGGTT
T ss_pred ccccccccccccccccccccccccccccccccCcccCCCHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhhccCC
Confidence 0 00111123344443333322 2345566688889999999886 6
Q ss_pred cEEeeCCC-----C-CeEE-EEEccCCCCCHHHHHHHHHHCCceeeeccCC
Q psy13354 304 IRIVSGGT-----K-SHII-LVDLRNKKITGKIAESILESANIICNKNSIP 347 (1342)
Q Consensus 304 ~~~~~~~~-----~-~~~v-~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p 347 (1342)
+.+..... . ..++ .+..+. +.+.+.+...|.++||.+++++.|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~GI~v~~~~~~ 379 (437)
T 3bb8_A 330 FIELPEATENSDPSWFGFPITLKEDS-GVSRIDLVKFLDEAKVGTRLLFAG 379 (437)
T ss_dssp TEECCCCCTTEECCCSSEEEEECGGG-SSCHHHHHHHHHHTTBCCBCCTTS
T ss_pred ccccCCCCCCCceeeEEEEEEECCcC-cCcHHHHHHHHHHCCCceeccCCc
Confidence 66543111 1 1122 243321 223444555555569999877654
No 190
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9
Probab=99.72 E-value=1e-16 Score=195.95 Aligned_cols=259 Identities=10% Similarity=0.087 Sum_probs=172.1
Q ss_pred hHHHHHHHHHHHHHHHhCCCCceEecCCHH-HHHHHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCceeEEEEe-
Q psy13354 70 FIDLIEKIAINRLKKIFNAEAANVQPHSGS-QANQAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICY- 145 (1342)
Q Consensus 70 ~~~~Le~~~~~~la~~~g~~~~vi~~~sGs-~A~~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~- 145 (1342)
...++++++++++++++|.+..+++++||| .++..++.++.. +|+.|+++...| .+....+...|..+..++.
T Consensus 130 ~~~~~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~~~~~~vi~~~~~h---~s~~~~~~~~G~~~~~v~~~ 206 (456)
T 2z67_A 130 IMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASH---KSPIKAVSFVGMNMRLVETV 206 (456)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHHHCCCEEEEECCCC---HHHHHHHHHTTCEEEEECCE
T ss_pred HHHHHHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHhcCCCEEEEECCCc---HHHHHHHHHcCCCceEEEEe
Confidence 366788889999999999984366666888 577766666533 678888666444 4456666777876555543
Q ss_pred cCCCCCCCCHHHHHHHH-Hh---cCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCCC
Q psy13354 146 GLNKKEKIDYKKVEYLA-KK---NKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPVP 218 (1342)
Q Consensus 146 ~~~~~~~id~e~Le~~i-~~---~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l~ 218 (1342)
+.+++|.+|++++++++ ++ .++.+++.+.++++ ...|+++|+++|+++|+++++|+||+....+. ......+.
T Consensus 207 ~~~~~~~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~l~~I~~la~~~g~~v~vD~A~~~~~~g~~~~~~~~~~ 286 (456)
T 2z67_A 207 LDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFK 286 (456)
T ss_dssp EETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHHHHT
T ss_pred ccCCCCCcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCCHHHHHHHHHHcCCcEEEECcchHHHHHhhHHHHHhhC
Confidence 22677899999999999 43 35566666666554 55699999999999999999999876433211 00000001
Q ss_pred -CCcEEEecCCccCCCCCe-eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHH
Q psy13354 219 -FADFITSTTHKSLRGPRG-GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKIL 295 (1342)
Q Consensus 219 -~~Divv~S~sK~l~gp~G-G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l 295 (1342)
.+|++++|+||++++|.| |++++ ++++++.+......+ .+.++ ..++.+++......+++++.++..++++++
T Consensus 287 ~~~D~~~~s~hK~~~~p~g~G~l~~~~~~~~~~l~~~~~g~---~~~~~-~~~~~aal~~l~~~~~~~~~~~~~~~~~~l 362 (456)
T 2z67_A 287 YRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISLSYPGR---ASATP-VVNTLVSLLSMGSKNYLELVKNQKNSKKLL 362 (456)
T ss_dssp SCCSEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHTTSCSC---BCSHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCcCCCCCeEEEEEcCHHHHhhcCcCCCCC---CCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999877877 99999 467777775432221 11122 333344444444457788899999999999
Q ss_pred HHHHHhC----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCc
Q psy13354 296 SKILDQR----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339 (1342)
Q Consensus 296 ~~~L~~~----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI 339 (1342)
.+.|.+. |+.+.. +. +++++.+.......++...|.++ ||
T Consensus 363 ~~~L~~~~~~~g~~v~~-~~--~~v~~~~~~~~~~~~l~~~L~~~-gi 406 (456)
T 2z67_A 363 DELLNDLSKKTGGKFLD-VE--SPIASCISVNSDPVEIAAKLYNL-RV 406 (456)
T ss_dssp HHHHHHHHHHSSCCBCC-CC--CSSEEEEECSSCHHHHHHHHHHT-TE
T ss_pred HHHHHhcccccCCEecC-CC--CeEEEEEecccHHHHHHHHHHHc-CC
Confidence 9999886 766543 23 55666662111124565555554 75
No 191
>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*
Probab=99.72 E-value=9.9e-17 Score=199.72 Aligned_cols=313 Identities=11% Similarity=0.063 Sum_probs=196.1
Q ss_pred ceeeeecCCCCcHH-HHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHH-HHHHHhCC------CCceEecCCHHH
Q psy13354 29 NIELIASENYTSLA-VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAIN-RLKKIFNA------EAANVQPHSGSQ 100 (1342)
Q Consensus 29 ~i~l~a~~n~l~~~-v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~-~la~~~g~------~~~vi~~~sGs~ 100 (1342)
.+.+..+++..+++ +.+++.+.+. ..+|+ ...+..++.+++.+ ++....+. ++.+++++|+++
T Consensus 106 ~i~l~~g~~~~~~~~~~~al~~~~~---~~~Y~------~~~g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~e 176 (546)
T 2zy4_A 106 SLSYVRDQLGLDPAAFLHEMVDGIL---GCNYP------VPPRMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTA 176 (546)
T ss_dssp HHHHHHHTSCCCHHHHHHHHHHHHH---TCSCC------SSSSCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHH
T ss_pred hhecccCCCCCCChHHHHHHHHhhh---cCCCC------CCcCCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHH
Confidence 35555566555544 6677666653 12333 22222356655443 34443322 244555657788
Q ss_pred HHHHHHHH-----ccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCCCCHHHHHHHHHhcCCeEEEEc
Q psy13354 101 ANQAVFFS-----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEKIDYKKVEYLAKKNKPKLIIAG 173 (1342)
Q Consensus 101 A~~~al~a-----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~id~e~Le~~i~~~~~~liv~~ 173 (1342)
|+..++.+ +++|||+|+++.+.|+++. ......+.+.++++++.+ .+|.+|++.+++.+. .++++++++
T Consensus 177 al~~~~~~l~~~~l~~~Gd~Vlv~~P~y~~~~---~~~~~~~~g~~~~~v~~~~~~~~~~d~~~l~~~~~-~~~k~v~l~ 252 (546)
T 2zy4_A 177 AMAYIFESLKLNGLLKAGDKVAIGMPVFTPYI---EIPELAQYALEEVAINADPSLNWQYPDSELDKLKD-PAIKIFFCV 252 (546)
T ss_dssp HHHHHHHHHHHTTSSCTTCEEEEEESCCHHHH---HHHHSTTSCCEEEEEECBGGGTTBCCHHHHGGGGS-TTEEEEEEE
T ss_pred HHHHHHHHhhhhhcCCCCCEEEEeCCCCccHH---HHHHHcCCCcEEEEEecCcccCCCCCHHHHHHhhC-CCCeEEEEE
Confidence 99999887 5789999998886665443 222333333466666655 346799999988764 356777766
Q ss_pred CCCCC-c----ccCHHHHHHHH--HHcCCEEEEEcccchhhhhcCCCCCCCC---CCcEEEecCCccCCCCCe---eEEE
Q psy13354 174 ASAYS-Q----YIDFERFYHIA--KNINSYFMVDMAHYAGLIAAGEYPNPVP---FADFITSTTHKSLRGPRG---GFIL 240 (1342)
Q Consensus 174 ~s~~~-~----~~~l~~I~~la--~~~gi~LIvDea~~~g~~~~~~~~~~l~---~~Divv~S~sK~l~gp~G---G~iv 240 (1342)
+++|| + ..++++|+++| +++|++||+||+|+..... ..+... ..+++++||||++ |.+| ||++
T Consensus 253 ~p~NPtG~~~~~~~l~~l~~~a~~~~~~~~ii~De~y~~~~~~---~~s~~~~~~~~~i~~~S~SK~~-g~~GlRiG~~~ 328 (546)
T 2zy4_A 253 NPSNPPSVKMDQRSLERVRNIVAEHRPDLMILTDDVYGTFADD---FQSLFAICPENTLLVYSFSKYF-GATGWRLGVVA 328 (546)
T ss_dssp SSCSSSCBCCCHHHHHHHHHHHHHTCTTCEEEEECTTGGGSTT---CCCHHHHCGGGEEEEEESTTTT-TCGGGCEEEEE
T ss_pred CCCCCCCccCCHHHHHHHHHHHHhccCCcEEEEeCcchhhccc---CcCHHHhCCCCEEEEEeCcccc-CCCCcceEEEE
Confidence 77776 2 22578889999 7899999999999854321 111111 2468899999999 6666 9999
Q ss_pred Eech-hHHHHhhcc-----------------------------------CCccccCCcHHHHHHHH----HHHHHhccch
Q psy13354 241 MKKK-YKKIINSAV-----------------------------------FPGIQGGPLMHVIAAKA----VAFKEVLKPD 280 (1342)
Q Consensus 241 ~~~~-l~~~l~~~~-----------------------------------~~~~~~~~~~~~~~Aaa----~al~~~l~~~ 280 (1342)
++++ +++.+.... ..+...+.+.+.+.+++ .++.+....+
T Consensus 329 ~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~ 408 (546)
T 2zy4_A 329 AHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSLKFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEY 408 (546)
T ss_dssp EESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGCCHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHH
T ss_pred ECCHHHHHHHHhhcchhhhHHHHHHhhhccccccchhhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHH
Confidence 9985 777663210 01222334455565542 2333222346
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccC----------------CCCCHHHHHHHHHHCCceeeec
Q psy13354 281 FKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN----------------KKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 281 ~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~----------------~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
.+..++.+.++++.+.+.|. .++.. .++.+++++|++++. ...+.+++..+++++||.+.|+
T Consensus 409 ~~~~r~~~~~r~~~l~~~L~-~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG 486 (546)
T 2zy4_A 409 KHTLKQLIRRRETTLYRELG-MPPLR-DENAVDYYTLIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPG 486 (546)
T ss_dssp HHHHHHHHHHHHHHHHGGGT-SSCCC-CTTBCCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEES
T ss_pred HHHHHHHHHHHHHHHHHhcC-CCccc-CCCCeeEEEEEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCc
Confidence 67778888888888888885 45432 234567888999752 0123456677777789999998
Q ss_pred cCCCCCCCccccccccccccc
Q psy13354 345 SIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 345 ~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..++.. .+++|++++.
T Consensus 487 ~~F~~~-----~~~iRis~~~ 502 (546)
T 2zy4_A 487 RGFGSN-----RPSGRASLAN 502 (546)
T ss_dssp SCTTCS-----SCEEEEESSS
T ss_pred cccCCC-----CCeEEEEecc
Confidence 777542 3579999975
No 192
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}
Probab=99.71 E-value=9.5e-17 Score=195.49 Aligned_cols=270 Identities=13% Similarity=0.079 Sum_probs=165.9
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCC----C
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK----E 151 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~----~ 151 (1342)
+++++++++ +|.++.+++++||++|+..++.+++++||+|++... +|.+....+...|..+..++...+++ +
T Consensus 60 ~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~~~~gd~Vlv~~~---~h~s~~~~~~~~G~~~~~v~~~~~~~~~~~~ 135 (446)
T 2x3l_A 60 LKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSFSQKKGDILMARN---VHKSVLHALDISQQEGHFIETHQSPLTNHYN 135 (446)
T ss_dssp HHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTTTTSSSCEEECTT---CCHHHHHHHHHHTCCEEECEEEECTTTSSEE
T ss_pred HHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHhcCCCCEEEEecC---ccHHHHHHHHHcCCeEEEEeCeeccccCcCC
Confidence 334559999 998877777867788999999999999999997664 45555555566676444443322544 5
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
.+|++.+ +.+ ++++++++++++. ...++++|+++|++||++||+|++|+......+....... .+|++++|+||
T Consensus 136 ~~d~~~l---~~~-~~~~v~~~~~n~~G~~~~l~~I~~l~~~~~~~livDea~~~~~~f~~~~~~~~~~g~Di~~~S~~K 211 (446)
T 2x3l_A 136 KVNLSRL---NND-GHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQGFPDSTLNYQADYVVQSFHK 211 (446)
T ss_dssp EEEC-----------CCEEEEESSCTTSCCCCHHHHHHHHHHTTCCEEEECTTCTTTTSTTSCCCGGGGTCSEEEECHHH
T ss_pred CCCHHHH---cCC-CceEEEEECCCCCeEecCHHHHHHHHHhcCCeEEEcchhhhhhccCCCCCChHHcCCCEEEECCcc
Confidence 6788877 333 3455555556555 4559999999999999999999999862211111112222 26999999999
Q ss_pred cCCCCCe-eEEEEechhHH--HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEE
Q psy13354 230 SLRGPRG-GFILMKKKYKK--IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306 (1342)
Q Consensus 230 ~l~gp~G-G~iv~~~~l~~--~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~ 306 (1342)
+++|+.| |++++++++++ .+......+..++++....+++..+.......+.+.+.++..++++++++. |+++
T Consensus 212 ~l~~~~g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g~~~~~~~~~~l~~~l~~~----g~~~ 287 (446)
T 2x3l_A 212 TLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYDSTLFFAKRAQLIECLENK----GFEM 287 (446)
T ss_dssp HSSSCTTCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH----TCEE
T ss_pred ccccccccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHc----CCEE
Confidence 8877766 99999887643 332211122234444444444443333222212233556666666666665 7877
Q ss_pred eeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccccc
Q psy13354 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRG 370 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~~ 370 (1342)
.... +...+|+.+++ ....++...+.+ +||.+... + .+.+|++++..++.+
T Consensus 288 ~~~~-~~~~l~i~~~~-~~~~~l~~~L~~-~GI~v~~~---g-------~~~iRi~~~~~~t~e 338 (446)
T 2x3l_A 288 LQVD-DPLKLLIKYEG-FTGHDIQNWFMN-AHIYLELA---D-------DYQALAILPLWHHDD 338 (446)
T ss_dssp EECS-STTEEEEECTT-SCHHHHHHHHHH-TTEEESEE---C-------SSCEEEECCCCCTTC
T ss_pred CcCC-CCeEEEEEeCC-cCHHHHHHHHHH-CCCEEEec---C-------CCEEEEEeecCCCHH
Confidence 6532 33468888762 223345555545 59998621 1 246999998766654
No 193
>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0
Probab=99.71 E-value=5.1e-16 Score=182.54 Aligned_cols=312 Identities=12% Similarity=0.054 Sum_probs=206.4
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCc--cCCcchHHHHHHHHHHHHHHHhCCC--CceEe-cCCHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY--YGGCKFIDLIEKIAINRLKKIFNAE--AANVQ-PHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~--~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~-~~sGs~A~ 102 (1342)
+.+.+.+++..+++.|++++.+.+.+.+ +++.+.+ ........++.+.+++.+++++|++ +.++| ++|||+++
T Consensus 5 ~~~~f~pgpt~~~~~V~~a~~~~~~~~~--~~~~s~~~~~hr~~~~~~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~ 82 (361)
T 3m5u_A 5 RKINFSAGPSTLPLEILEQAQKELCDYQ--GRGYSIMEISHRTKVFEEVHFGAQEKAKKLYELNDDYEVLFLQGGASLQF 82 (361)
T ss_dssp CCEECCSSSCCCCHHHHHHHHHTSSSGG--GSSSCGGGSCSSSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHH
T ss_pred ceEeecCCCCCCcHHHHHHHHHHHHhcc--cCCceeeccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHH
Confidence 5577899999999999999998875433 3333321 1113344566677999999999985 35666 87999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCC--CCHHHHHHHHHhcCCeEEEEcCCCCCcc
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEK--IDYKKVEYLAKKNKPKLIIAGASAYSQY 180 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~--id~e~Le~~i~~~~~~liv~~~s~~~~~ 180 (1342)
+.++..++ +||+++.......++. ........|..+..++++ +++. ++++. + +++++..+.+.++.+..+.
T Consensus 83 n~~~~~~~-~~~~~~~i~~~~~~~~-~~~~a~~~G~~v~~~~~~--~~g~~~~~~~~-~--l~~~t~lv~~~~~e~~tG~ 155 (361)
T 3m5u_A 83 AMIPMNLA-LNGVCEYANTGVWTKK-AIKEAQILGVNVKTVASS--EESNFDHIPRV-E--FSDNADYAYICSNNTIYGT 155 (361)
T ss_dssp HHHHHHHC-CSSCEEEEECSHHHHH-HHHHHHHTTCCEEEEEEC--TTTTSCSCCCC-C--CCTTSSEEEEESEETTTTE
T ss_pred HHHHHhcC-CCCeEEEEeCCHHHHH-HHHHHHHcCCceEEEecc--cCcCCCcCChh-h--cCCCCCEEEEeCCCCCcce
Confidence 99999998 8987643222111221 122345567766666554 3342 45555 3 5554333444433333333
Q ss_pred -cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc-c----
Q psy13354 181 -IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA-V---- 253 (1342)
Q Consensus 181 -~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~-~---- 253 (1342)
.+ . +++ +|+++++|++|++|...- .++..|++++|.|||+ ||.| |+++.++++.+.+.+. .
T Consensus 156 ~~~--~---i~~-~~~~~~vD~~q~~g~~~i-----d~~~~d~~~~s~~K~~-gp~G~g~l~~~~~~~~~~~~~~~p~~~ 223 (361)
T 3m5u_A 156 QYQ--N---YPK-TKTPLIVDASSDFFSRKV-----DFSNIALFYGGVQKNA-GISGLSCIFIRKDMLERSKNKQIPSML 223 (361)
T ss_dssp ECS--S---CCC-CSSCEEEECGGGTTSSCC-----CCTTEEEEEEETTTTS-SCTTCEEEEEEHHHHHHHHTCCCCGGG
T ss_pred eCC--c---ccc-cCCEEEEEcccccCCCCC-----CcccCCEEEEechhcc-CCCccEEEEEcHHHHhhhcCCCCCcee
Confidence 23 1 334 499999999999887621 1223699999999999 8999 9999999887666431 0
Q ss_pred -------CCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCC-c-EEeeCC--CCCeEEEEEcc
Q psy13354 254 -------FPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRG-I-RIVSGG--TKSHIILVDLR 321 (1342)
Q Consensus 254 -------~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g-~-~~~~~~--~~~~~v~i~~~ 321 (1342)
.....++++.+...++..++..+.+. +++.+.++..+.++++.+.|.+.+ + .....+ ....++.+.++
T Consensus 224 ~~~~~~~~~~~~~Tp~v~~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~ 303 (361)
T 3m5u_A 224 NYLTHAENQSLFNTPPTFAIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIA 303 (361)
T ss_dssp CHHHHHHTTTCSSCCCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEES
T ss_pred ehHHHhhcCCCCCCccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECC
Confidence 12234678888888888888777766 689999999999999999999987 5 543221 11346777777
Q ss_pred C-CCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 322 N-KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 322 ~-~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+ ...+.++. ..|+++||.+.++.. . .+.+|+|+..++|.
T Consensus 304 ~~~~~~~~~~-~~L~~~gI~~~~g~~----~----~g~iRiS~~~~~t~ 343 (361)
T 3m5u_A 304 KNKDLEPLFV-KEAEEAGMIGLKGHR----I----LGGIRASIYNALNL 343 (361)
T ss_dssp SCTTHHHHHH-HHHHHTTEECCBCCT----T----TCSEEEECCTTSCH
T ss_pred CchhhhHHHH-HHHHHCCCEEecCCC----c----cCeEEEEccCCCCH
Confidence 5 33333444 556677999865321 1 24599999887663
No 194
>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*
Probab=99.71 E-value=5.7e-16 Score=187.59 Aligned_cols=241 Identities=15% Similarity=0.167 Sum_probs=165.7
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+.+++++++++|.+++++++ +|++|+..++.+++++||+|+++...|++...... .+...|. +++.++.+
T Consensus 116 ~~~l~~~lA~l~g~~~~v~~~-sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~----- 187 (445)
T 1qgn_A 116 TVVLEEKISALEGAESTLLMA-SGMCASTVMLLALVPAGGHIVTTTDCYRKTRIFIETILPKMGI--TATVIDPA----- 187 (445)
T ss_dssp HHHHHHHHHHHHTCSEEEEES-CHHHHHHHHHHHHSCSSCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECSS-----
T ss_pred HHHHHHHHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC--EEEEeCCC-----
Confidence 344555899999988777777 99999999999999999999988866655433222 3455566 44555554
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|+++++++++++++++|++++++|+ ...|+++|+++|++||++||+|++|+.+... .++. .+|++++|+||+
T Consensus 188 d~~~l~~ai~~~tv~lV~le~p~NptG~v~dl~~I~~la~~~g~~livD~a~~~~~~~-----~~~~~g~Div~~S~sK~ 262 (445)
T 1qgn_A 188 DVGALELALNQKKVNLFFTESPTNPFLRCVDIELVSKLCHEKGALVCIDGTFATPLNQ-----KALALGADLVLHSATKF 262 (445)
T ss_dssp CHHHHHHHHHHSCEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTC-----CTTTTTCSEEEECTTTT
T ss_pred CHHHHHHHhccCCCCEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccC-----CccccCCEEEEECCccc
Confidence 8999999998765377777666666 4559999999999999999999999865431 2233 379999999999
Q ss_pred CCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-Cc-E
Q psy13354 231 LRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GI-R 305 (1342)
Q Consensus 231 l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~-~ 305 (1342)
+++.. +|++++++++++.+..... .+++...+..+.+.. ..++ .+....+++.+++.++.+.|.+. ++ .
T Consensus 263 ~gg~gd~~~G~l~~~~~l~~~l~~~~~--~~g~~~~~~~a~~~~---~~l~-~l~~r~~~~~~~a~~l~~~L~~~p~v~~ 336 (445)
T 1qgn_A 263 LGGHNDVLAGCISGPLKLVSEIRNLHH--ILGGALNPNAAYLII---RGMK-TLHLRVQQQNSTALRMAEILEAHPKVRH 336 (445)
T ss_dssp TTCSSSCCCEEEEECHHHHHHHHHHHH--HHCCCCCHHHHHHHH---HHGG-GHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred ccccccceEEEEEECHHHHHHHHHHHH--HhCCCCCHHHHHHHH---HhHH-HHHHHHHHHHHHHHHHHHHHhcCCCceE
Confidence 96554 6999999988887765322 223323333333222 2222 45556677888899999999886 35 3
Q ss_pred EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHC
Q psy13354 306 IVSGG---------------TKSHIILVDLRNKKITGKIAESILESA 337 (1342)
Q Consensus 306 ~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~ 337 (1342)
+..+. ..++++++.+++. .+....+++..
T Consensus 337 v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~---~~~~~~~l~~l 380 (445)
T 1qgn_A 337 VYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGD---LLTTAKFVDAL 380 (445)
T ss_dssp EECTTSSSSTTHHHHHHHCSCCCSEEEEEESSC---HHHHHHHHHHC
T ss_pred EECCCCCCCchHHHHHHhccCCCcEEEEEECCC---HHHHHHHHHhC
Confidence 33221 1356888888752 23345555543
No 195
>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}
Probab=99.71 E-value=1.9e-16 Score=186.69 Aligned_cols=310 Identities=12% Similarity=0.058 Sum_probs=205.5
Q ss_pred eecCCCCcHHHHHHHhHHHHhccccCCCCCCc--cCCcchHHHHHHHHHHHHHHHhCCC--CceEe-cCCHHHHHHHHHH
Q psy13354 33 IASENYTSLAVMEAQGTLLTNKYAEGYPGKRY--YGGCKFIDLIEKIAINRLKKIFNAE--AANVQ-PHSGSQANQAVFF 107 (1342)
Q Consensus 33 ~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~--~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~-~~sGs~A~~~al~ 107 (1342)
.+.....|+.|++++.+.+.+.+. ++.+.+ ........++.+.+++.+++++|++ +.++| ++|||+++++++.
T Consensus 18 ~at~~~~p~~Vl~a~~~~~~~~~~--n~~s~~~~~hr~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~ 95 (377)
T 3e77_A 18 LYFQSMLPHSVLLEIQKELLDYKG--VGISVLEMSHRSSDFAKIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPL 95 (377)
T ss_dssp EECSCCCCHHHHHHHHHTSSSGGG--SSSCTTTCCTTSHHHHHHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHHhccc--CCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHH
Confidence 455678899999999988865442 332211 1223445667777999999999987 34666 5689999999999
Q ss_pred HccCC--CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHH
Q psy13354 108 SVLNP--GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFE 184 (1342)
Q Consensus 108 al~~p--GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~ 184 (1342)
.++.+ ||+|++....+.++ .....++..|. .++.++.++++..+++.++..+++.+..+.++++.+.. ...|+
T Consensus 96 ~l~~~~~Gd~v~~~~~g~~~~-~~~~~a~~~G~--~~~~~~~~~~~~~~~~~~~~~i~~~t~lV~~~h~et~tG~~~pi- 171 (377)
T 3e77_A 96 NLIGLKAGRCADYVVTGAWSA-KAAEEAKKFGT--INIVHPKLGSYTKIPDPSTWNLNPDASYVYYCANETVHGVEFDF- 171 (377)
T ss_dssp HHGGGSTTCEEEECCCSHHHH-HHHHHHTTTSE--EEECSCCCSSSCSCCCGGGCCCCTTCSCEEEESEETTTTEECSS-
T ss_pred hccCCCCCCeEEEEECCHHHH-HHHHHHHHhCC--ceEEeccCCCcCCCCChHHhccCCCccEEEEeCccCchheEchh-
Confidence 99865 99988644332222 12233445565 44445665555567777665555544444444444333 44466
Q ss_pred HHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc---------
Q psy13354 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA--------- 252 (1342)
Q Consensus 185 ~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~--------- 252 (1342)
+|+++|+++++|.+|++|.. +++ ..+++++|.|||+ ||.| |+++.++++.+.+.+.
T Consensus 172 ----i~~~~~~~~~vD~~q~~g~~-------~id~~~~~~~~~s~~K~~-gp~G~g~l~~~~~~l~~~~~~~p~~~~~~~ 239 (377)
T 3e77_A 172 ----IPDVKGAVLVCDMSSNFLSK-------PVDVSKFGVIFAGAQKNV-GSAGVTVVIVRDDLLGFALRECPSVLEYKV 239 (377)
T ss_dssp ----CCCCTTCCEEEECTTTTTSS-------CCCGGGCSEEEEEGGGTT-SCTTCEEEEEETTSCSCCCTTSCGGGCHHH
T ss_pred ----hhccCCCEEEEEcccccCCC-------CCchhhcCEEEEeccccc-CCCccEEEEEcHHHHhhccCCCCchhhHHH
Confidence 47889999999999998876 333 2468899999999 8999 9999988653322110
Q ss_pred --cCCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC--C-CeEEEEEccCCCC
Q psy13354 253 --VFPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQR-GIRIVSGGT--K-SHIILVDLRNKKI 325 (1342)
Q Consensus 253 --~~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~--~-~~~v~i~~~~~~~ 325 (1342)
......++|+.+...++..++..+.+. +++.+.++..+.++++.+.|.+. |+.+..... . ..++.+.+++...
T Consensus 240 ~~~~~~~~~Tp~v~~i~~l~~al~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~ 319 (377)
T 3e77_A 240 QAGNSSLYNTPPCFSIYVMGLVLEWIKNNGGAAAMEKLSSIKSQTIYEIIDNSQGFYVCPVEPQNRSKMNIPFRIGNAKG 319 (377)
T ss_dssp HHTTTTCSSCCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSEECCSCGGGBCSSEEEEEESSTTC
T ss_pred HhhcCCCCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCceecCCCHHHcCCcEEEEEcCCCCC
Confidence 112235688888888888888777666 68999999999999999999997 777532111 1 2356777775321
Q ss_pred ----CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 326 ----TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 326 ----~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+..+...+. ++||.+.++. .. .+.+|+|+...+|.
T Consensus 320 ~~~~~~~~l~~l~-~~Gi~~~~g~----~~----~g~iRiS~~~~~t~ 358 (377)
T 3e77_A 320 DDALEKRFLDKAL-ELNMLSLKGH----RS----VGGIRASLYNAVTI 358 (377)
T ss_dssp CHHHHHHHHHHHH-HTTEESCBCC----TT----TCSEEEECCTTSCH
T ss_pred chhHHHHHHHHHH-HCCcEEeCCC----Cc----CCEEEEECCCCCCH
Confidence 123444444 5699987542 11 24699999887663
No 196
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Probab=99.70 E-value=7.8e-16 Score=188.70 Aligned_cols=307 Identities=18% Similarity=0.209 Sum_probs=183.9
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC----CCCE-
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN----PGDT- 115 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~----pGD~- 115 (1342)
+.+.+++.+.+.. + ...|+......++++ ++++++|.+++++++ ||++|+..++.+++. |||+
T Consensus 55 ~~v~~a~~~~~~~----~---~~~y~~~~~~~~l~~----~la~~~~~~~v~~t~-ggt~A~~~al~~~~~~~~~~Gd~~ 122 (467)
T 1ax4_A 55 NAMSDHQWAAMIT----G---DEAYAGSRNYYDLKD----KAKELFNYDYIIPAH-QGRGAENILFPVLLKYKQKEGKAK 122 (467)
T ss_dssp CCEEHHHHHHHHT----C---CCCSSSCHHHHHHHH----HHHHHHCCCEEEEES-SHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHhh----c---ccccccCccHHHHHH----HHHHHcCCCcEEEcC-CcHHHHHHHHHHHHHhhccCCCcc
Confidence 4566666665531 1 112444455556655 888888887655555 999999999999988 9998
Q ss_pred --EEEeeccCCccchhhHHhhhCCceeEEEEecC--C------CCCCCCHHHHHHHHHhc---CCeEEEEcCCCCCc---
Q psy13354 116 --IMGMSLQEGGHLTHGMMLNMSGKWFNSICYGL--N------KKEKIDYKKVEYLAKKN---KPKLIIAGASAYSQ--- 179 (1342)
Q Consensus 116 --Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~--~------~~~~id~e~Le~~i~~~---~~~liv~~~s~~~~--- 179 (1342)
|+++. .+ +......+...|..+..++.+. + .++.+|++++++++++. ++++|++++++++.
T Consensus 123 ~~viv~~-~~--~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~ 199 (467)
T 1ax4_A 123 NPVFISN-FH--FDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQ 199 (467)
T ss_dssp SCEEEES-SC--CHHHHHHHHHTTCEEEECBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSB
T ss_pred ceEEEec-cc--cchhhHHHhccCCceecccccccccccccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCcc
Confidence 88662 22 2222334455565333322210 1 14578999999999863 45677766655442
Q ss_pred ---ccCHHHHHHHHHHcCCEEEEEcccch-hhh-------h-cCCCCCCC-----CCCcEEEecCCccCCCCCeeEEEEe
Q psy13354 180 ---YIDFERFYHIAKNINSYFMVDMAHYA-GLI-------A-AGEYPNPV-----PFADFITSTTHKSLRGPRGGFILMK 242 (1342)
Q Consensus 180 ---~~~l~~I~~la~~~gi~LIvDea~~~-g~~-------~-~~~~~~~l-----~~~Divv~S~sK~l~gp~GG~iv~~ 242 (1342)
..++++|+++|++||++||+|++|.. +.+ . .+.....+ ..+|++++|+||+++.+.||+++++
T Consensus 200 ~~~~~~l~~i~~la~~~gi~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~~~ 279 (467)
T 1ax4_A 200 PVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIR 279 (467)
T ss_dssp CCCHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEES
T ss_pred CCChhHHHHHHHHHHHcCCEEEEEchhhhhcchhccccccccCCCchhhhhhhhccccceEEEeccccCCCCcceEEEeC
Confidence 23688999999999999999999765 222 1 11110001 2358889999999954458888888
Q ss_pred -c-hhHHHHhhccC----CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEE
Q psy13354 243 -K-KYKKIINSAVF----PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316 (1342)
Q Consensus 243 -~-~l~~~l~~~~~----~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v 316 (1342)
+ ++++.+..... ...+++.......+++.++..... ++..++..++++++.+.|.+.++++. .+..++++
T Consensus 280 d~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~ 355 (467)
T 1ax4_A 280 DNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTE---EEYLHYRIGQVKYLGDRLREAGIPIQ-YPTGGHAV 355 (467)
T ss_dssp SCHHHHHHHHHHHHHHTCSTTTTTCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCBC-SSCCSSEE
T ss_pred CHHHHHHHHHhhccccccccccCCccchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHHhCCCCcc-cCCCceEE
Confidence 6 77776543211 112222223233333334433322 12334445778889999988777764 35667889
Q ss_pred EEE-------ccCCC-CCHHHHHHHHHHCCceeee-ccC-CCC-C--C--Ccccccccccccccc
Q psy13354 317 LVD-------LRNKK-ITGKIAESILESANIICNK-NSI-PND-P--E--KPYFTSGIRLGSSAI 366 (1342)
Q Consensus 317 ~i~-------~~~~~-~~~~~~~~ll~~~GI~v~~-~~~-p~~-~--~--~~~~~~~lRi~~~~~ 366 (1342)
|+. ++... ...++...++.++||.+.+ +.. ++. + + .+...+.+|++++..
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~ 420 (467)
T 1ax4_A 356 FVDCKKLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 420 (467)
T ss_dssp EEESTTTCTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTT
T ss_pred EEehhhhccccccCCCCHHHHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccc
Confidence 988 33211 2345666664677999987 321 110 0 0 000135799998853
No 197
>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*
Probab=99.69 E-value=2.3e-15 Score=180.92 Aligned_cols=245 Identities=18% Similarity=0.148 Sum_probs=166.0
Q ss_pred HHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCCH
Q psy13354 77 IAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 77 ~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id~ 155 (1342)
.+++.+++++|.+++++++ +|++|+..++.+++++||+|+++...|+++...+. .+...|. +++.++.+ |+
T Consensus 66 ~l~~~ia~~~g~~~~i~~~-~g~~ai~~~~~~l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~-----d~ 137 (404)
T 1e5e_A 66 NLEGKIAFLEKTEACVATS-SGMGAIAATVLTILKAGDHLISDECLYGCTHALFEHALTKFGI--QVDFINTA-----IP 137 (404)
T ss_dssp HHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTC--EEEEECTT-----ST
T ss_pred HHHHHHHHHhCCCcEEEeC-ChHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCC--EEEEECCC-----CH
Confidence 3455888999988776666 99999999999999999999988877665443222 3556677 45555654 78
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHH-cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKN-INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~-~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
+++++.+++ +++++++++++|| ...++++|+++|++ +|++||+|++|+.+.+. .++. ..|++++|+||++
T Consensus 138 ~~l~~~i~~-~t~~v~l~~p~NptG~v~~l~~i~~la~~~~~~~li~De~~~~~~~~-----~~~~~~~di~~~S~sK~~ 211 (404)
T 1e5e_A 138 GEVKKHMKP-NTKIVYFETPANPTLKIIDMERVCKDAHSQEGVLVIADNTFCSPMIT-----NPVDFGVDVVVHSATKYI 211 (404)
T ss_dssp THHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTSTTCEEEEECTTTCTTTC-----CGGGGTCSEEEEETTTTT
T ss_pred HHHHHhcCC-CCcEEEEECCCCCCCcccCHHHHHHHHHhhcCCEEEEECCCchhhhC-----CccccCCEEEEEcCcccc
Confidence 889988865 4567777666666 44599999999999 99999999999876542 1222 3699999999999
Q ss_pred CCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cE-
Q psy13354 232 RGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IR- 305 (1342)
Q Consensus 232 ~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~- 305 (1342)
+++. ||++++++++++ .+......+..++.+...+.++..++. ......++..+++..+.+.+++.. +.
T Consensus 212 ~~~g~ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~-----~~~~~~~~~~~~~~~l~~~l~~~~~v~~ 286 (404)
T 1e5e_A 212 NGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLS-----TLNIRMKAESENAMKVAEYLKSHPAVEK 286 (404)
T ss_dssp TCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHT-----THHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred CCCCCCeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHh-----HHHHHHHHHHHHHHHHHHHHHhCCCeeE
Confidence 6654 499999998887 777654333022222333333332321 234456677888888888887753 22
Q ss_pred EeeCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 306 IVSGG---------------TKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 306 ~~~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
+..+. ..+.++.+.+++. .+.+..++++.||.+..
T Consensus 287 ~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~~l~~~~i~~~~ 336 (404)
T 1e5e_A 287 VYYPGFEDHEGHDIAKKQMRMYGSMITFILKSG---FEGAKKLLDNLKLITLA 336 (404)
T ss_dssp EECTTCSSSTTHHHHHHHCSSCCSEEEEEETTH---HHHHHHHHHTCSSSEES
T ss_pred EECCCCCCCccHHHHHhhCCCCceEEEEEeCCC---HHHHHHHHHhCCCceec
Confidence 11110 1144555577542 35567788888995544
No 198
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.69 E-value=6.6e-16 Score=184.78 Aligned_cols=292 Identities=13% Similarity=0.099 Sum_probs=182.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCC------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNP------ 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~p------ 112 (1342)
.+|.+.+++.+.+. .+.. .... ...+...+ +++++++++|.+.+++++ ||++|+..++.++..+
T Consensus 53 ~~p~v~~a~~~~~~-~~~~--~~~~--~~~~~~~~----l~~~la~~~g~~~v~~~~-~gt~a~~~al~~~~~~~~~~~~ 122 (392)
T 3ruy_A 53 RHPKIINALIDQAN-RVTL--TSRA--FHSDQLGP----WYEKVAKLTNKEMVLPMN-TGAEAVETAIKTARRWAYDVKK 122 (392)
T ss_dssp TCHHHHHHHHHHHT-TCSC--CCTT--SEETTHHH----HHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHH-hccc--cccc--cCCHHHHH----HHHHHHHhcCCCEEEEeC-cHHHHHHHHHHHHHHhhhhccC
Confidence 46789999888874 3321 1111 22333444 445889999966555554 9999999999987644
Q ss_pred ----CCEEEEeeccCCccchhhHHhhhC-Cc-------eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--
Q psy13354 113 ----GDTIMGMSLQEGGHLTHGMMLNMS-GK-------WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-- 178 (1342)
Q Consensus 113 ----GD~Vlv~~~~~~~~~s~~~~~~~~-g~-------~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-- 178 (1342)
+|+|++....+.+........... +. ......++.+ |++++++++++ ++++|++++++++
T Consensus 123 ~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~-~~~~v~~~~~~nptG 196 (392)
T 3ruy_A 123 VEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYG-----DLEALKAAITP-NTAAFILEPIQGEAG 196 (392)
T ss_dssp CCTTCCEEEEETTCCCCSSHHHHHTCSCTTTTTTCCSCCSSEEEECTT-----CHHHHHHHCCT-TEEEEEECSSBSTTT
T ss_pred CCCCCcEEEEEcCCcCCCCHhhhhccCChhhccccCCCCCCCeeeCcc-----cHHHHHHHhcc-CeEEEEEeCccCCCC
Confidence 679998777765544332221111 00 0113333433 89999998873 5677777676665
Q ss_pred cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC--CCeeEEEEechhHHHH
Q psy13354 179 QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG--PRGGFILMKKKYKKII 249 (1342)
Q Consensus 179 ~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g--p~GG~iv~~~~l~~~l 249 (1342)
...+ +++|+++|++||++||+||+|+. ....+.... ... ..|+++ +||+++| ..+|++++++++++.+
T Consensus 197 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~-~~~~g~~~~~~~~~~~~d~~~--~SK~l~gG~~~~G~~~~~~~~~~~~ 273 (392)
T 3ruy_A 197 INIPPAGFLKEALEVCKKENVLFVADEIQTG-LGRTGKVFACDWDNVTPDMYI--LGKALGGGVFPISCAAANRDILGVF 273 (392)
T ss_dssp SBCCCTTHHHHHHHHHHTTTCEEEEECTTTT-TTTTSSSSGGGGGTCCCSEEE--ECGGGGTTTSCCEEEEECHHHHTTC
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEeechhC-CCccccchhhhccCCCCCEEE--EchhhhCChhhhEEEEECHHHHhhh
Confidence 3334 99999999999999999999952 111121111 111 247764 5699966 4569999999888777
Q ss_pred hhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC---cEEeeCCCCCeEEEEEccCCCCC
Q psy13354 250 NSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG---IRIVSGGTKSHIILVDLRNKKIT 326 (1342)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g---~~~~~~~~~~~~v~i~~~~~~~~ 326 (1342)
........++ .+...++++..++. ... . ++..+++.++++++.+.|.+.+ +.... ..++++++.++. ..
T Consensus 274 ~~~~~~~~~~-~~~~~~~a~~~~l~-~~~-~-~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~--~~g~~~~~~~~~--~~ 345 (392)
T 3ruy_A 274 EPGSHGSTFG-GNPLACAVSIAALE-VLE-E-EKLTERSLQLGEKLVGQLKEIDNPMITEVR--GKGLFIGIELNE--PA 345 (392)
T ss_dssp CTTSSCCSST-TCHHHHHHHHHHHH-HHH-H-TTHHHHHHHHHHHHHHHHTTCCCTTEEEEE--EETTEEEEEESS--CS
T ss_pred ccCCcCCCCC-CCHHHHHHHHHHHH-HHH-h-hhHHHHHHHHHHHHHHHHHHhcCCCceEEE--eeeeEEEEEEcc--hH
Confidence 6544433333 33444444444443 332 1 4567888999999999998875 33222 235566777765 45
Q ss_pred HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 327 GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 327 ~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.++...++ ++||.+.+.. .+++|++++..++
T Consensus 346 ~~l~~~l~-~~gi~v~~~~----------~~~iRi~~~~~~~ 376 (392)
T 3ruy_A 346 RPYCEQLK-AAGLLCKETH----------ENVIRIAPPLVIS 376 (392)
T ss_dssp HHHHHHHH-TTTEECCCBT----------TTEEEECCCTTCC
T ss_pred HHHHHHHH-HCCcEEecCC----------CCEEEEECCCCCC
Confidence 56666666 5699998541 3569999776554
No 199
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.69 E-value=2.1e-16 Score=175.44 Aligned_cols=209 Identities=14% Similarity=0.181 Sum_probs=158.6
Q ss_pred HHHhhccCC-CCcccccc---chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 379 VVLARKYRP-SNFNTLIG---QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 379 ~~l~~k~~p-~~f~~lvG---q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
.++..+++| .+|++++| ++.+++.+...+..+ ..+.++|+||+|+|||++++.+++.+...+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~ll~G~~G~GKT~la~~l~~~~~~~~------------- 80 (242)
T 3bos_A 15 LSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGD-GVQAIYLWGPVKSGRTHLIHAACARANELE------------- 80 (242)
T ss_dssp CEEECCCCTTCSTTTSCC--CCHHHHHHHHHHHHTC-SCSEEEEECSTTSSHHHHHHHHHHHHHHTT-------------
T ss_pred cCCCCCCCCCCChhhccCCCCCHHHHHHHHHHHhCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHcC-------------
Confidence 467788888 78999997 357788888888765 346789999999999999999999987421
Q ss_pred CCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHH--HHHHHHhhcCCCC--cE
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA--FNAMLKTLEEPPK--YI 530 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~--~~~Ll~~Le~p~~--~~ 530 (1342)
..+..++..... ..+.+. .....++.+|+|||++.+.... .+.|+.+++.... ..
T Consensus 81 -------------~~~~~~~~~~~~--~~~~~~------~~~~~~~~vliiDe~~~~~~~~~~~~~l~~~l~~~~~~~~~ 139 (242)
T 3bos_A 81 -------------RRSFYIPLGIHA--SISTAL------LEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRG 139 (242)
T ss_dssp -------------CCEEEEEGGGGG--GSCGGG------GTTGGGSSEEEEETGGGGTTCHHHHHHHHHHHHHHHHHCSC
T ss_pred -------------CeEEEEEHHHHH--HHHHHH------HHhccCCCEEEEeccccccCCHHHHHHHHHHHHHHHHcCCC
Confidence 112233322110 000011 1122456799999999986544 6778887765322 22
Q ss_pred EEEEEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 531 KFILATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 531 vlIl~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
.+|++++... ...+.+.+|+ ..++|.+++.+++.+++..+++..++.+++++++.+++.++||+|.+.+.+++
T Consensus 140 ~ii~~~~~~~~~~~~~~~~l~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~r~l~~~l~~ 219 (242)
T 3bos_A 140 SLIVSASASPMEAGFVLPDLVSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMARDLRTLFDVLDR 219 (242)
T ss_dssp EEEEEESSCTTTTTCCCHHHHHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred eEEEEcCCCHHHHHHhhhhhhhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHHHHHHHHH
Confidence 4677776443 4558999999 99999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc---CCCCCHHHHHHHhc
Q psy13354 604 AINYS---SEKITLNSMQEMLS 622 (1342)
Q Consensus 604 l~~~~---~~~It~e~V~~~v~ 622 (1342)
+..++ +..||.++|++++.
T Consensus 220 ~~~~a~~~~~~It~~~v~~~l~ 241 (242)
T 3bos_A 220 LDKASMVHQRKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHTCCCCHHHHHHHHT
T ss_pred HHHHHHHhCCCCcHHHHHHHhh
Confidence 88776 45699999998874
No 200
>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*
Probab=99.69 E-value=7.8e-17 Score=191.19 Aligned_cols=314 Identities=11% Similarity=0.029 Sum_probs=195.6
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCc--cCCcchHHHHHHHHHHHHHHHhCCC--CceEe-cCCHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY--YGGCKFIDLIEKIAINRLKKIFNAE--AANVQ-PHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~--~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~-~~sGs~A~ 102 (1342)
+...+.+++..+++.|++++.+.+.+.+ +++.+.+ ........++.+.+++.+++++|++ +.++| ++|||+++
T Consensus 27 ~~yl~~agpt~~p~~V~~a~~~~~~~~~--~n~~s~~~~~h~~~~~~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~ 104 (386)
T 3qm2_A 27 QVFNFSSGPAMLPAEVLKLAQQELCDWH--GLGTSVMEISHRGKEFIQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQF 104 (386)
T ss_dssp CCEECCSSSCCCCHHHHHHHTCC-------------------------CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHH
T ss_pred cCccccCCCCCCCHHHHHHHHHHHHhcc--ccCccccccCCCCHHHHHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHH
Confidence 3455788899999999999988775433 2332211 1112223345566888999999986 34566 57999999
Q ss_pred HHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC--CCCC-CCHHHHHHHHHhcCCeEEEEcCCCCC-
Q psy13354 103 QAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN--KKEK-IDYKKVEYLAKKNKPKLIIAGASAYS- 178 (1342)
Q Consensus 103 ~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~--~~~~-id~e~Le~~i~~~~~~liv~~~s~~~- 178 (1342)
+.++..++.+||+|++....+.++. ........| .+..+ +.+ +.|. +++++++.++++.+..+.+.++.+.+
T Consensus 105 n~ai~~l~~~gd~v~~~~~~~~~~~-~~~~a~~~G-~v~~v--~~~~~~~G~~~~~~~~~~~l~~~t~lV~~~h~et~tG 180 (386)
T 3qm2_A 105 AGVPLNLLGDKTTADYVDAGYWAAS-AIKEAKKYC-APQII--DAKITVDGKRAVKPMREWQLSDNAAYLHYCPNETIDG 180 (386)
T ss_dssp HHHHHHHCTTCCEEEEEESSHHHHH-HHHHHTTTS-EEEEE--ECEEEETTEEEECCGGGCCCCTTCSCEEECSEETTTT
T ss_pred HHHHHhccCCCCeEEEEeCCHHHHH-HHHHHHHhC-CeEEE--ecCcccCCCCCCchHHHhhcCCCCcEEEEECCcCCcC
Confidence 9999999999999876543332221 122334556 55555 444 3443 67777777666544334333333333
Q ss_pred cc-cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC--CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhc--
Q psy13354 179 QY-IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP--FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSA-- 252 (1342)
Q Consensus 179 ~~-~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~--~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~-- 252 (1342)
.. .|+++|. +|+++++|++|++|.. +++ ..|++++|.|||+ ||.| |+++.++++.+.+.+.
T Consensus 181 ~~i~pi~~i~-----~g~~~~vDa~qs~g~~-------pidv~~~~~~~~s~hK~l-GP~G~g~l~v~~~~~~~~~~~~p 247 (386)
T 3qm2_A 181 IAIDETPDFG-----PEVVVTADFSSTILSA-------PLDVSRYGVIYAGAQKNI-GPAGLTLVIVREDLLGKAHESCP 247 (386)
T ss_dssp EECCCCCCCC-----TTCCEEEECTTTTTSS-------CCCGGGCSEEEEETTTTT-CCTTEEEEEEEGGGCSCCCTTSC
T ss_pred EecCchhhhc-----CCCEEEEEcccccCCC-------CCCccccCEEEEeccccc-CCCccEEEEECHHHHhhhcccCC
Confidence 32 4787775 7999999999998876 333 2468889999999 8999 9999998763322211
Q ss_pred ---------cCCccccCCcHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHHHHHhCCcEEee-CC--CCCeEEEEE
Q psy13354 253 ---------VFPGIQGGPLMHVIAAKAVAFKEVLKP-DFKIYQKQVVKNAKILSKILDQRGIRIVS-GG--TKSHIILVD 319 (1342)
Q Consensus 253 ---------~~~~~~~~~~~~~~~Aaa~al~~~l~~-~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~--~~~~~v~i~ 319 (1342)
.....+++++.+...++..++....+. +++.+.++..+.++++.+.|.+.|+.... .+ ....++.+.
T Consensus 248 ~~~~~~~~~~~~~~~gTp~v~~i~~l~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~~~~rs~~iv~f~ 327 (386)
T 3qm2_A 248 SILDYTVLNDNDSMFNTPPTFAWYLSGLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSDFYRNDVAQANRSRMNVPFQ 327 (386)
T ss_dssp GGGCHHHHHHC-------CCSHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCSSEECCBCGGGBCSSEEEEE
T ss_pred cHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCCCcccCCCHHHcCceEEEEE
Confidence 012223567777788888887766665 68888999999999999999988763221 11 112467777
Q ss_pred ccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 320 LRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 320 ~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+++...+..+... ++++||.+..+... .+++|+|+...+|.
T Consensus 328 ~~~~~~~~~~~~~-L~~~gI~~~~g~~~--------~~~iRiS~~~~~t~ 368 (386)
T 3qm2_A 328 LADNTLDKVFLEE-SFAAGLHALKGHRV--------VGGMRASIYNAMPI 368 (386)
T ss_dssp ESSGGGHHHHHHH-HHHTTEECCBCCTT--------TCSEEEECCTTSCH
T ss_pred CCCccccHHHHHH-HHHCCCEEeCCCCC--------cCeEEEEcCCCCCH
Confidence 7753334455555 56779998643111 14599998877663
No 201
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*
Probab=99.69 E-value=3.9e-15 Score=180.50 Aligned_cols=313 Identities=12% Similarity=-0.028 Sum_probs=187.0
Q ss_pred ceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.+.+.++. ++ .+|.+++++.+.+.. +. .++... |. . ....++++.++++++.+ +.+++++||++|+
T Consensus 45 ylD~~~~~~~~~lg~~~p~v~~a~~~~~~~-~~-~~~~~~-~~-~----~~~~~l~~~la~~~~~~~~~v~~~~ggtea~ 116 (429)
T 1s0a_A 45 LVDGMSSWWAAIHGYNHPQLNAAMKSQIDA-MS-HVMFGG-IT-H----APAIELCRKLVAMTPQPLECVFLADSGSVAV 116 (429)
T ss_dssp EEESSTTTTTCTTCBSCHHHHHHHHHHHHH-CS-CCCCSS-EE-C----HHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred EEEcCccHhhccCCCCCHHHHHHHHHHHHh-cc-cccccc-cC-C----HHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Confidence 35554544 23 467799999988853 21 111111 11 1 23344555888888744 4566666999999
Q ss_pred HHHHHHcc---C----CCCEEEEeeccCCccchhhHHhh---------h--CCceeEEEEecCC---CC-CCCCHHHHHH
Q psy13354 103 QAVFFSVL---N----PGDTIMGMSLQEGGHLTHGMMLN---------M--SGKWFNSICYGLN---KK-EKIDYKKVEY 160 (1342)
Q Consensus 103 ~~al~al~---~----pGD~Vlv~~~~~~~~~s~~~~~~---------~--~g~~~~~v~~~~~---~~-~~id~e~Le~ 160 (1342)
..++.++. + |||+|++....+.++........ . ...++..++++.. +. +.+|++++++
T Consensus 117 ~~ai~~~~~~~~~~g~~~~~vi~~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~ 196 (429)
T 1s0a_A 117 EVAMKMALQYWQAKGEARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFAR 196 (429)
T ss_dssp HHHHHHHHHHHHHHTCCCCEEEEETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHH
T ss_pred HHHHHHHHHHhcccCCCCCeEEEECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHH
Confidence 99998653 2 69999988765554322111100 0 0112355554431 12 2579999999
Q ss_pred HHHh--cCCeEEEEcCC-CCC-c-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 161 LAKK--NKPKLIIAGAS-AYS-Q-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 161 ~i~~--~~~~liv~~~s-~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
++++ .+++++++++. +++ + ..+ +++|+++|++||++||+||+|. +|..+......... ..|++ |+||
T Consensus 197 ~l~~~~~~~~~vi~~p~~~n~tG~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~--t~sK 274 (429)
T 1s0a_A 197 LMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDIL--CLGK 274 (429)
T ss_dssp HHHHHTTTEEEEEECSSEECTTTCEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECG
T ss_pred HHHhCCCCEEEEEEeecccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEE--Eecc
Confidence 9875 34566666555 443 3 334 9999999999999999999996 33211100001111 24766 5679
Q ss_pred cCCCC-Ce-eEEEEechhHHHHhhcc-----CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 230 SLRGP-RG-GFILMKKKYKKIINSAV-----FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 230 ~l~gp-~G-G~iv~~~~l~~~l~~~~-----~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
+++++ .+ |++++++++++.+.... ....+ +.+.+.++++.+++....+ ..+.+++.++++++.+.|.+.
T Consensus 275 ~l~~G~~~iG~~~~~~~~~~~l~~~~~~~~~~~~t~-~~n~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~l 350 (429)
T 1s0a_A 275 ALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTF-MGNPLACAAANASLAILES---GDWQQQVADIEVQLREQLAPA 350 (429)
T ss_dssp GGGTSSSCCEEEEECHHHHHHHHTSTTSSCSCCCTT-TTCHHHHHHHHHHHHHHHT---CHHHHHHHHHHHHHHHHHGGG
T ss_pred cccCCCccceEEEeCHHHHHHhhcCCCcccccCCCC-CCCHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHHH
Confidence 99654 34 99999999888886531 11122 2234445554444433322 235677888899999999874
Q ss_pred ----CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 303 ----GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 303 ----g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++.... ..+.++|+.++......++...++ ++||.+.+. .+++|++++..++.
T Consensus 351 ~~~~~~~~~~--~~g~~~~~~~~~~~~~~~l~~~l~-~~Gi~v~~~-----------~~~iRis~~~~~t~ 407 (429)
T 1s0a_A 351 RDAEMVADVR--VLGAIGVVETTHPVNMAALQKFFV-EQGVWIRPF-----------GKLIYLMPPYIILP 407 (429)
T ss_dssp GGCTTEEEEE--EETTEEEEEESSCBCHHHHHHHHH-HTTEECCCB-----------TTEEEECCCTTCCH
T ss_pred hcCCCEEEEE--EeeEEEEEEECCcccHHHHHHHHH-HCCCEEecc-----------CCEEEEECCCCCCH
Confidence 333222 234578888875333445666666 569999752 24699998766554
No 202
>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}
Probab=99.68 E-value=6e-16 Score=186.28 Aligned_cols=243 Identities=17% Similarity=0.189 Sum_probs=162.8
Q ss_pred HHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCC
Q psy13354 74 IEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEK 152 (1342)
Q Consensus 74 Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~ 152 (1342)
..+++++++++++|.+.+++++ ||++|+..++.++++|||+|+++...|++...... .....|. +++.++.+
T Consensus 82 ~~~~l~~~la~~~g~~~~~~~~-sG~~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~---- 154 (414)
T 3ndn_A 82 TVSVFEERLRLIEGAPAAFATA-SGMAAVFTSLGALLGAGDRLVAARSLFGSCFVVCSEILPRWGV--QTVFVDGD---- 154 (414)
T ss_dssp HHHHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHTTCCTTCEEEEESCCCHHHHHHHHTHHHHTTC--EEEEECTT----
T ss_pred HHHHHHHHHHHHHCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCccchHHHHHHHHHHHcCc--EEEEeCCC----
Confidence 3444555999999988776666 99999999999999999999988877665443332 2344666 45555655
Q ss_pred CCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 153 IDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 153 id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
|++++++++++ ++++|+++++++| ...++++|+++|++||++||+|++|+.+.... ++. .+|+++.|+||
T Consensus 155 -d~~~l~~ai~~-~t~~v~le~p~NptG~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-----~~~~g~div~~S~sK 227 (414)
T 3ndn_A 155 -DLSQWERALSV-PTQAVFFETPSNPMQSLVDIAAVTELAHAAGAKVVLDNVFATPLLQQ-----GFPLGVDVVVYSGTK 227 (414)
T ss_dssp -CHHHHHHHTSS-CCSEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-----CGGGTCSEEEEETTT
T ss_pred -CHHHHHHhcCC-CCeEEEEECCCCCCCccccHHHHHHHHHHcCCEEEEECCCcccccCC-----chhcCCCeEeccCCc
Confidence 89999999876 4566666666666 44599999999999999999999998765421 223 36999999999
Q ss_pred cCCCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-Cc
Q psy13354 230 SLRGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR-GI 304 (1342)
Q Consensus 230 ~l~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~ 304 (1342)
+++++. ||+++++++.+. .++.... ..+....+..+++.. ..+ +.+....++..+++.++.+.|.+. ++
T Consensus 228 ~l~~~G~~~~G~vv~~~~~~~~~l~~~~~--~~g~~~~~~~a~~~~---~~l-~~l~~r~~~~~~~a~~l~~~L~~~p~v 301 (414)
T 3ndn_A 228 HIDGQGRVLGGAILGDREYIDGPVQKLMR--HTGPAMSAFNAWVLL---KGL-ETLAIRVQHSNASAQRIAEFLNGHPSV 301 (414)
T ss_dssp TTTCSSCCCCEEEEECHHHHTTHHHHHHH--HHCCCCCHHHHHHHH---HHG-GGHHHHHHHHHHHHHHHHHHHHTCTTE
T ss_pred cccCCCCceEEEEEECHHHHHHHHHHHHH--HcCCCCCHHHHHHHH---HHH-HHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 995423 599999987665 4442211 112222333333222 222 256667788899999999999875 34
Q ss_pred EEeeCCC----------------CCeEEEEEccCCC-CCHHHHHHHHHH
Q psy13354 305 RIVSGGT----------------KSHIILVDLRNKK-ITGKIAESILES 336 (1342)
Q Consensus 305 ~~~~~~~----------------~~~~v~i~~~~~~-~~~~~~~~ll~~ 336 (1342)
..+..|. .+.++++.+++.. .+.+....+++.
T Consensus 302 ~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~ 350 (414)
T 3ndn_A 302 RWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDK 350 (414)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHH
T ss_pred eEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHh
Confidence 3322111 3568899886520 002344555544
No 203
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Probab=99.68 E-value=1.6e-15 Score=180.20 Aligned_cols=292 Identities=15% Similarity=0.084 Sum_probs=181.5
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH---cc---CC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS---VL---NP 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a---l~---~p 112 (1342)
.++.+.+++.+.+.. + +..... |. .....+ +++.+++++|.++.+++++||++|+..++.+ +. +|
T Consensus 45 ~~~~v~~a~~~~~~~-~--~~~~~~-y~-~~~~~~----l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~ 115 (375)
T 2eh6_A 45 AYPKLTEALKEQVEK-L--LHVSNL-YE-NPWQEE----LAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYWRDKGK 115 (375)
T ss_dssp SCHHHHHHHHHHHHH-C--SCCCTT-BC-CHHHHH----HHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCHHHHHHHHHHHHh-c--cccCcc-cC-CHHHHH----HHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHHhccCCC
Confidence 567799998888753 2 122222 32 233334 4558899999843445555999999999875 35 78
Q ss_pred C-CEEEEeeccCCccchhhHHhhh-----CCce---eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-ccc-
Q psy13354 113 G-DTIMGMSLQEGGHLTHGMMLNM-----SGKW---FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYI- 181 (1342)
Q Consensus 113 G-D~Vlv~~~~~~~~~s~~~~~~~-----~g~~---~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~- 181 (1342)
| |+|++....++++......... .+.. ..+..++. .|++++++.+++ +++++++++++++ +..
T Consensus 116 g~~~vl~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~l~~~l~~-~~~~v~~~~~~~~tG~~~ 189 (375)
T 2eh6_A 116 NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKL-----NDIDSVYKLLDE-ETAGIIIEVIQGEGGVNE 189 (375)
T ss_dssp CCCEEEEEBTCCCCSSHHHHHHCBCGGGTTTTCSCCSSEEEECT-----TCHHHHHTTCCT-TEEEEEECSEETTTTSEE
T ss_pred CCCEEEEECCCcCCCchhhhhhcCCccccCCCCCCCCCceeCCC-----chHHHHHHHhcC-CeEEEEEeCccCCCCCcC
Confidence 8 9999888776554332222110 0110 01222232 489999988764 5677777776665 333
Q ss_pred C----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC
Q psy13354 182 D----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 182 ~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~ 254 (1342)
+ +++|.++|++||++||+|++|+ ++..+.......+. ..|++ |+||+++++.+ |++++++++++.+.....
T Consensus 190 ~~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~--s~SK~~~~g~~~G~~~~~~~~~~~~~~~~~ 267 (375)
T 2eh6_A 190 ASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVI--ALAKGLGGGVPIGAILAREEVAQSFTPGSH 267 (375)
T ss_dssp CCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSCCEEEEEEHHHHTTCCTTSC
T ss_pred CCHHHHHHHHHHHHHhCCEEEEeccccCCCCCCcchhhhhcCCCCCEE--EEcccccCCCCeEEEEEcHHHHhhhcCCCC
Confidence 6 9999999999999999999998 33221100011111 25777 55699965444 999999887776655322
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCCCeEEEEEccCCCCCHHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESIL 334 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll 334 (1342)
...+++ +...+.++. +..+... ...+++.++++++.+.|.+.+..... ..++++|++++. ...++...++
T Consensus 268 ~~~~~~-~~~~~~~~~-~~l~~~~----~~~~~~~~~~~~l~~~L~~~~~~~~~--~~g~~~~~~~~~--~~~~~~~~l~ 337 (375)
T 2eh6_A 268 GSTFGG-NPLACRAGT-VVVDEVE----KLLPHVREVGNYFKEKLKELGKGKVK--GRGLMLGLELER--ECKDYVLKAL 337 (375)
T ss_dssp CCSSTT-CHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHTTSSEEE--EETTEEEEECSS--CCHHHHHHHH
T ss_pred CCCCCC-CHHHHHHHH-HHHHHHH----HHHHHHHHHHHHHHHHHHHHhcCCce--EEEEEEEEEEcC--cHHHHHHHHH
Confidence 333333 233333333 3333322 56788899999999999887653322 346788988865 2556777776
Q ss_pred HHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 335 ESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 335 ~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+ +||.+.+.. .+++|++++..++
T Consensus 338 ~-~gi~~~~~~----------~~~iRi~~~~~~~ 360 (375)
T 2eh6_A 338 E-KGLLINCTA----------GKVLRFLPPLIIQ 360 (375)
T ss_dssp H-TTEECEEET----------TTEEEECCCTTCC
T ss_pred H-CCCEEecCC----------CCEEEEECCCCCC
Confidence 5 699998641 3469999875444
No 204
>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*
Probab=99.68 E-value=1e-15 Score=183.66 Aligned_cols=307 Identities=10% Similarity=0.018 Sum_probs=189.5
Q ss_pred CceeeeecCCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEe-cCCHHHHHHH
Q psy13354 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQ-PHSGSQANQA 104 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~-~~sGs~A~~~ 104 (1342)
..+.+.+++..+++.+++++.+... ...+ .....+...++.+++++++++++|.+ +.+++ ++||++|+..
T Consensus 40 ~~~~~~~~~~~~~~~v~~a~~~~~~-----~~~~--~~~~~~~~~~~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~ 112 (398)
T 2fyf_A 40 RDGRFGSGPSKVRLEQLQTLTTTAA-----ALFG--TSHRQAPVKNLVGRVRSGLAELFSLPDGYEVILGNGGATAFWDA 112 (398)
T ss_dssp SSCBCCSSSCCCCHHHHHGGGTTTT-----TTTT--SCTTSHHHHHHHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHH
T ss_pred CCccccCCCCCCCHHHHHHHhhcCC-----CccC--cCcCCHHHHHHHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHH
Confidence 3466778888888889998765210 0000 00111223456667888999999986 35666 7799999999
Q ss_pred HHHHccCCC-CEEEEeeccCCccchhhHHhhhC--CceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--c
Q psy13354 105 VFFSVLNPG-DTIMGMSLQEGGHLTHGMMLNMS--GKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--Q 179 (1342)
Q Consensus 105 al~al~~pG-D~Vlv~~~~~~~~~s~~~~~~~~--g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~ 179 (1342)
++.++++|| +.| ....++.. ........ |..+..++ .+++...+.+ ++ .++++|++++++++ .
T Consensus 113 ~~~~l~~~gv~~v--~~~~~~~~--~~~~~~~~~~g~~~~~v~--~~~g~~~~~~-----i~-~~~~~v~~~~~~nptG~ 180 (398)
T 2fyf_A 113 AAFGLIDKRSLHL--TYGEFSAK--FASAVSKNPFVGEPIIIT--SDPGSAPEPQ-----TD-PSVDVIAWAHNETSTGV 180 (398)
T ss_dssp HHHHTCSSCEEEE--ECSHHHHH--HHHHHHHCTTSCCCEEEE--CCTTCCCCCC-----CC-TTCSEEEEESEETTTTE
T ss_pred HHHHhcCCCeEEE--eCCHHHHH--HHHHHHHhCCCCceEEEe--cCCCCCCCcc-----cc-CCCCEEEEeCcCCCcce
Confidence 999999887 333 22222111 11122333 55445554 4322222321 23 34566666555544 4
Q ss_pred ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe-eEEEEechhHHHHhhcc-----
Q psy13354 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAV----- 253 (1342)
Q Consensus 180 ~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~----- 253 (1342)
..++++|.++ +|++||+|++|+.+.... .+..+|++++|+||+++++.| |++++++++++.++...
T Consensus 181 ~~~~~~i~~~---~~~~vivD~a~~~~~~~~-----~~~~~di~~~s~sK~~~~~gg~g~l~~~~~~~~~l~~~~~~~~~ 252 (398)
T 2fyf_A 181 AVAVRRPEGS---DDALVVIDATSGAGGLPV-----DIAETDAYYFAPQKNFASDGGLWLAIMSPAALSRIEAIAATGRW 252 (398)
T ss_dssp ECCCCCCTTC---C-CEEEEECTTTTTTSCC-----CGGGCSEEEECTTSTTCSCSSEEEEEECHHHHHHHHHHHHTTCC
T ss_pred ecchHHhhhh---cCCeEEEEeccccCCccc-----CcccCcEEEEecCcccCCCCceEEEEECHHHHHHhhcccccCCC
Confidence 4477777766 899999999998764311 122369999999999944434 89999998877764210
Q ss_pred ---------------CCccccCCcHHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHhC-CcEEee-CC--CCC
Q psy13354 254 ---------------FPGIQGGPLMHVIAAKAVAFKEVLKPD-FKIYQKQVVKNAKILSKILDQR-GIRIVS-GG--TKS 313 (1342)
Q Consensus 254 ---------------~~~~~~~~~~~~~~Aaa~al~~~l~~~-~~~~~~~l~~~a~~l~~~L~~~-g~~~~~-~~--~~~ 313 (1342)
....+++++...+.++..++......+ +++..+++.++++++.+.|.+. |+++.. .+ ...
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~ 332 (398)
T 2fyf_A 253 VPDFLSLPIAVENSLKNQTYNTPAIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQERPYTTPFVTDPGLRSQ 332 (398)
T ss_dssp CCGGGCHHHHHHHHTTTCCSSCCCHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHSTTEEESCCSGGGBCS
T ss_pred CCcEEehHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHcCCceeccCChhhcCC
Confidence 012334555666666666655443333 7788899999999999999987 788753 12 123
Q ss_pred eEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 314 HIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 314 ~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+++|+.++......++...+.++ ||.+.+...+ ...+.+|++++..++
T Consensus 333 ~~~~~~~~~~~~~~~l~~~L~~~-gI~v~~g~~~------~~~~~iRis~~~~~t 380 (398)
T 2fyf_A 333 VVGTIDFVDDVDAGTVAKILRAN-GIVDTEPYRK------LGRNQLRVAMFPAVE 380 (398)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHT-TCBCCSCCTT------TCSSEEEEECCTTSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHC-CcEEecCccc------CCCCEEEEEecCCCC
Confidence 48888886533344566666555 9999764111 113579999997655
No 205
>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3
Probab=99.68 E-value=1e-14 Score=174.22 Aligned_cols=245 Identities=14% Similarity=0.154 Sum_probs=165.5
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKID 154 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id 154 (1342)
..+++.+++++|.++.++++ +|++|+..++.+++.+||+|++....|++..... ......|. +++.++.+ |
T Consensus 55 ~~l~~~la~~~~~~~~i~~~-sGt~a~~~~~~~~~~~g~~vl~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~-----d 126 (386)
T 1cs1_A 55 DVVQRALAELEGGAGAVLTN-TGMSAIHLVTTVFLKPGDLLVAPHDCYGGSYRLFDSLAKRGCY--RVLFVDQG-----D 126 (386)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHHHTTTSC--EEEEECTT-----C
T ss_pred HHHHHHHHHHhCCCcEEEeC-CHHHHHHHHHHHHhCCCCEEEEecCCcHhHHHHHHHHHHhcCC--EEEEeCCC-----C
Confidence 33555899999988777776 8899999999999999999998886665433222 22345565 45555554 8
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
++++++.+++ +++++++++++++ ...++++|.++|++||+++|+|++|+.+.... +.. ..|++++|+||++
T Consensus 127 ~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-----~~~~~~di~~~s~sK~~ 200 (386)
T 1cs1_A 127 EQALRAALAE-KPKLVLVESPSNPLLRVVDIAKICHLAREVGAVSVVDNTFLSPALQN-----PLALGADLVLHSCTKYL 200 (386)
T ss_dssp HHHHHHHHHT-CCSEEEEECSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-----GGGGTCSEEEEETTTTT
T ss_pred HHHHHHhhcc-CCcEEEEeCCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-----ccccCceEEEEcCcccc
Confidence 9999999986 4566666666555 44599999999999999999999998765421 122 3699999999999
Q ss_pred CCCCe---eEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEE
Q psy13354 232 RGPRG---GFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRI 306 (1342)
Q Consensus 232 ~gp~G---G~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~ 306 (1342)
+++.+ |++++++ ++++.+......+. +..++..++++.... . .+....+++.++++.+.+.|.+.+ +..
T Consensus 201 ~~~~~~~~G~~~~~~~~l~~~l~~~~~~~~--~~~~~~~~~~~~~~l---~-~~~~~~~~~~~~~~~l~~~l~~~~~l~~ 274 (386)
T 1cs1_A 201 NGHSDVVAGVVIAKDPDVVTELAWWANNIG--VTGGAFDSYLLLRGL---R-TLVPRMELAQRNAQAIVKYLQTQPLVKK 274 (386)
T ss_dssp TCSSCCCCEEEEESSHHHHHHHHHHHHHHT--CBCCHHHHHHHHHHH---T-THHHHHHHHHHHHHHHHHHHTTCTTEEE
T ss_pred cCCCCceeEEEEeCcHHHHHHHHHHHHhcC--CCCCHHHHHHHHhcc---c-HHHHHHHHHHHHHHHHHHHHhcCCCeEE
Confidence 66654 9999987 78777765433322 212233222222222 2 445566778888888988888753 222
Q ss_pred e-eC---------------CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 307 V-SG---------------GTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 307 ~-~~---------------~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
. .+ ...++++.+.+++. .+.+..++++.||.+..
T Consensus 275 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~l~~~gi~~~~ 324 (386)
T 1cs1_A 275 LYHPSLPENQGHEIAARQQKGFGAMLSFELDGD---EQTLRRFLGGLSLFTLA 324 (386)
T ss_dssp EECTTSTTSTTHHHHHHHCSSCCSEEEEEESSC---HHHHHHHHHTCSSSEEB
T ss_pred EECCCCCCCccHHHHHHhcCCCceEEEEEECCC---HHHHHHHHHhCCcceEc
Confidence 1 11 11256677776542 45566677778998874
No 206
>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3
Probab=99.68 E-value=1.9e-15 Score=176.46 Aligned_cols=244 Identities=16% Similarity=0.138 Sum_probs=161.4
Q ss_pred HHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCCCCCCCHH
Q psy13354 78 AINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNKKEKIDYK 156 (1342)
Q Consensus 78 ~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~~~~id~e 156 (1342)
+++.+++++|.+++++++ +|++|+..++.+++++||+|+++...|+++...... ....|. +++.++. .|++
T Consensus 3 l~~~la~~~g~~~~i~~~-sG~~a~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~-----~d~~ 74 (331)
T 1pff_A 3 LEGKIAKLEHAEACAATA-SGMGAIAASVWTFLKAGDHLISDDCLYGCTHALFEHQLRKFGV--EVDFIDM-----AVPG 74 (331)
T ss_dssp HHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESCCCHHHHHHHHTHHHHTTC--EEEEECT-----TSTT
T ss_pred HHHHHHHHhCCCeEEEeC-ChHHHHHHHHHHhcCCCCEEEEcCCCcchHHHHHHHHHHhcCC--EEEEeCC-----CCHH
Confidence 455899999998666666 889999999999999999999888766554333221 244566 4444454 3788
Q ss_pred HHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHH-cCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCC
Q psy13354 157 KVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKN-INSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233 (1342)
Q Consensus 157 ~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~-~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~g 233 (1342)
++++.+++ +++++++++++++ ...++++|.++|++ +|+++|+|++|+.|...... ....|++++|+||++++
T Consensus 75 ~l~~~i~~-~~~~v~~~~~~nptG~~~~~~~i~~~~~~~~~~~li~D~a~~~~~~~~~~----~~~~d~~~~s~~K~~~~ 149 (331)
T 1pff_A 75 NIEKHLKP-NTRIVYFETPANPTLKVIDIEDAVKQARKQKDILVIVDNTFASPILTNPL----DLGVDIVVHSATKYING 149 (331)
T ss_dssp HHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTTSSSCEEEEECTTTHHHHCCGG----GGTCSEEEEETTTTTSS
T ss_pred HHHHhhcC-CCeEEEEECCCCCcCcccCHHHHHHHHhhhcCCEEEEECCCcccccCChh----hcCCcEEEEECccccCC
Confidence 88888764 4566666666555 44599999999999 99999999999887652111 11369999999999966
Q ss_pred CC---eeEEEEec-hhHHHHhhccCC-ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-----
Q psy13354 234 PR---GGFILMKK-KYKKIINSAVFP-GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG----- 303 (1342)
Q Consensus 234 p~---GG~iv~~~-~l~~~l~~~~~~-~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g----- 303 (1342)
+. +|++++++ ++++.+...... +. ++.+...+.++..++ + ......++..++...+.+.+.+..
T Consensus 150 ~~~r~~G~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~l-~----~~~~~~~~~~~~~~~~~~~l~~~~~l~~~ 223 (331)
T 1pff_A 150 HTDVVAGLVCSRADIIAKVKSQGIKDITG-AIISPHDAWLITRGT-L----TLDMRVKRAAENAQKVAEFLHEHKAVKKV 223 (331)
T ss_dssp SSSCCCEEEEECHHHHHHHHHTCCCCCCC-CCCCHHHHHHHHHHH-H----HHHHHHHHHHHHHHHHHHHHHHCTTCCCE
T ss_pred CCCceEEEEEeCcHHHHHHHHHHHHhhcC-CCCCHHHHHHHHcCc-c----hHHHHHHHHHHHHHHHHHHHHcCCCeeEE
Confidence 54 58999998 898888875444 22 223232332222222 2 223334556666666666665431
Q ss_pred ----------cEEeeC--CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeec
Q psy13354 304 ----------IRIVSG--GTKSHIILVDLRNKKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 304 ----------~~~~~~--~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+++..+ ...++++.+.+. +.+.+..++++.||.+.+.
T Consensus 224 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~~~~~ 272 (331)
T 1pff_A 224 YYPGLPDHPGHEIAKKQMKMFGSMIAFDVD----GLEKAKKVLDNCHVVSLAV 272 (331)
T ss_dssp ECTTSTTSTTHHHHHHHCSSCCSEEEEECS----SHHHHHHHHHTCSSSEECS
T ss_pred ECCCCCCCccHHHHHhhCCCCceEEEEEEC----CHHHHHHHHHhCCCceecc
Confidence 111110 113457777765 3456777778889987654
No 207
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*
Probab=99.68 E-value=1.3e-15 Score=185.26 Aligned_cols=305 Identities=13% Similarity=0.099 Sum_probs=185.2
Q ss_pred ceeeeecCCC-----CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASENY-----TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~n~-----l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++.++ .+|.+.+++.+.+.. +. .... .+ ..+...++++ ++++++|.+.+++ ++||++|+.
T Consensus 78 ylD~~sg~~~~~lgh~~p~v~~Ai~~~~~~-~~--~~~~-~~-~~~~~~~l~~----~la~~~g~~~v~~-~~sGseA~~ 147 (439)
T 2oat_A 78 YFDFLSSYSAVNQGHCHPKIVNALKSQVDK-LT--LTSR-AF-YNNVLGEYEE----YITKLFNYHKVLP-MNTGVEAGE 147 (439)
T ss_dssp EEESSGGGGTTTTCBTCHHHHHHHHHHHTT-CS--CCCT-TS-EESSHHHHHH----HHHHHHTCSEEEE-ESSHHHHHH
T ss_pred EEEccCCcccccCCCCCHHHHHHHHHHHHh-cC--cccC-cc-CCHHHHHHHH----HHHHhcCCCEEEE-eCCHHHHHH
Confidence 3555554432 457799999888743 22 1111 12 2333444444 7888888665544 559999999
Q ss_pred HHHHHcc---------CCC-CEEEEeeccCCccchhhHHhhhCC-------c---eeEEEEecCCCCCCCCHHHHHHHHH
Q psy13354 104 AVFFSVL---------NPG-DTIMGMSLQEGGHLTHGMMLNMSG-------K---WFNSICYGLNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 104 ~al~al~---------~pG-D~Vlv~~~~~~~~~s~~~~~~~~g-------~---~~~~v~~~~~~~~~id~e~Le~~i~ 163 (1342)
.++.++. .+| |+|++.+..+.++.... +...| . ...++.++.+ |++++++.+.
T Consensus 148 ~al~~~~~~~~~~~g~~~g~~~vi~~~~~yhg~~~~~--~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~ 220 (439)
T 2oat_A 148 TACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSA--ISSSTDPTSYDGFGPFMPGFDIIPYN-----DLPALERALQ 220 (439)
T ss_dssp HHHHHHHHHHHHTTCCCTTCCEEEEETTCCCCSSHHH--HTTCCCHHHHTTSCSCCTTEEEECSS-----CHHHHHHHTT
T ss_pred HHHHHHHHHhhhccCCCCCCCeEEEEcCCCCCCCHhH--hhcCCChhcccCCCCCCCCeEEeCCC-----CHHHHHHHhC
Confidence 9998864 367 89998776554432211 11212 0 0123334443 8999999885
Q ss_pred hcCCeEEEEcCCCCC-c-cc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC
Q psy13354 164 KNKPKLIIAGASAYS-Q-YI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP 234 (1342)
Q Consensus 164 ~~~~~liv~~~s~~~-~-~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp 234 (1342)
..+++++++.+.+++ + .. ++++|.++|++||++||+||+|. |+...+... .... .+|++ |+||+++++
T Consensus 221 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~-g~g~~g~~~~~~~~~~~~Di~--t~sK~l~~G 297 (439)
T 2oat_A 221 DPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQT-GLARTGRWLAVDYENVRPDIV--LLGKALSGG 297 (439)
T ss_dssp STTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTT
T ss_pred CCCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-CCccCCcchhHHHhCCCCcEE--EecccccCC
Confidence 335567776553322 2 22 79999999999999999999994 432222211 1111 25776 778999653
Q ss_pred --CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEee-CCC
Q psy13354 235 --RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS-GGT 311 (1342)
Q Consensus 235 --~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~-~~~ 311 (1342)
.+|++++++++++.+........+++ ++..++++.+..+.+.+ +.+.+++.++++++.+.|++.++++.. .+.
T Consensus 298 ~~~~G~v~~~~~~~~~l~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~ 373 (439)
T 2oat_A 298 LYPVSAVLCDDDIMLTIKPGEHGSTYGG--NPLGCRVAIAALEVLEE--ENLAENADKLGIILRNELMKLPSDVVTAVRG 373 (439)
T ss_dssp SSCCEEEEECHHHHTTSCTTSSCCSSTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHTTSCTTTEEEEEE
T ss_pred CCCeEEEEECHHHHhccCCCCcccCCCc--CHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHhcCCCcEEEEe
Confidence 46999999988877765333444433 33434444444444322 245788899999999999886543211 112
Q ss_pred CCeEEEEEccCC--CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 312 KSHIILVDLRNK--KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 312 ~~~~v~i~~~~~--~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.+.++++.++.. ....++...+++ +||.+.+. + .+.+|++++..++
T Consensus 374 ~g~~~~v~l~~~~~~~~~~l~~~l~~-~Gv~v~~~-------~---~~~iRi~~~~~~t 421 (439)
T 2oat_A 374 KGLLNAIVIKETKDWDAWKVCLRLRD-NGLLAKPT-------H---GDIIRFAPPLVIK 421 (439)
T ss_dssp ETTEEEEEECCCSSCCHHHHHHHHHH-TTEECCBS-------S---SSEEEECCCTTCC
T ss_pred eeeEEEEEEecCccHHHHHHHHHHHH-CCeEEecC-------C---CCEEEEECccCCC
Confidence 456788888654 224456666665 59999852 1 3569998876544
No 208
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*
Probab=99.68 E-value=9.2e-16 Score=195.23 Aligned_cols=280 Identities=16% Similarity=0.094 Sum_probs=179.7
Q ss_pred HHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCC---CCC
Q psy13354 77 IAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNK---KEK 152 (1342)
Q Consensus 77 ~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~---~~~ 152 (1342)
++++.+++++|.+.++++++|+++|+.+++.++++|||+|++.... |.+.... +...|..+..++...++ .+.
T Consensus 177 e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al~~pGD~VLv~~~~---H~S~~~~~~~l~Ga~~v~v~~~~~~~~i~g~ 253 (730)
T 1c4k_A 177 AAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNN---HKSVYNSALAMAGGRPVYLQTNRNPYGFIGG 253 (730)
T ss_dssp HHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEETTC---CHHHHHHHTTTTCCEEEEECEEECTTCCEEE
T ss_pred HHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHhcCCCCEEEEcCCc---hHHHHHHHHHHCCCEEEEEeCCccccCccCC
Confidence 3455999999999887777444589999999999999999977644 4444444 56667744444332221 134
Q ss_pred CCHHHH-----HHHHHhc------C--C-eEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC--CC
Q psy13354 153 IDYKKV-----EYLAKKN------K--P-KLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY--PN 215 (1342)
Q Consensus 153 id~e~L-----e~~i~~~------~--~-~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~--~~ 215 (1342)
+|++++ ++++++. + + ++++++++++. ...++++|+++|++||++|++|+||+.+....... ..
T Consensus 254 id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~pn~~G~v~dl~~I~~la~~~g~~livDeAh~~~~~f~~~~~g~~ 333 (730)
T 1c4k_A 254 IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSS 333 (730)
T ss_dssp ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEECHHHHHHHHGGGBSEEEEECTTCCGGGSSGGGGGGC
T ss_pred CCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECCCCCCeecCHHHHHHHHHHcCCeEEEEcccccccccCcccCCcC
Confidence 677777 8888754 2 2 66666666654 44599999999999999999999997543211100 01
Q ss_pred CCC----CCc----EEEecCCccCCCCCe-eEEEEechhH---------HHHhhccCCccccCCcHHHHHHHHHHHHHhc
Q psy13354 216 PVP----FAD----FITSTTHKSLRGPRG-GFILMKKKYK---------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVL 277 (1342)
Q Consensus 216 ~l~----~~D----ivv~S~sK~l~gp~G-G~iv~~~~l~---------~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l 277 (1342)
++. .+| ++++|+||+++|+.+ |+++.+++.+ ..+......+..++++.+..+++.++.....
T Consensus 334 ~l~~~~~g~D~~~~iv~~S~hK~L~g~~~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~~~stsp~~~~iaal~aA~~~l~ 413 (730)
T 1c4k_A 334 PLLIDDLGPEDPGIIVVQSVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAMQE 413 (730)
T ss_dssp TTSCCCCCTTSCEEEEEECHHHHSSCCTTCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHS
T ss_pred cccccccCCCCCCEEEEECCCCCCCCCCCEEEEEecchhhcCcccccCHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHH
Confidence 121 246 999999999977765 7776665432 2222211122234555555666555554433
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHh--CCcEEeeCCC------------------------------------CC-e-E--
Q psy13354 278 KPDFKIYQKQVVKNAKILSKILDQ--RGIRIVSGGT------------------------------------KS-H-I-- 315 (1342)
Q Consensus 278 ~~~~~~~~~~l~~~a~~l~~~L~~--~g~~~~~~~~------------------------------------~~-~-~-- 315 (1342)
.+...+..+++.++++++++.|.+ .|+++..+.. .+ + +
T Consensus 414 ~~~g~~~~~~~~~~a~~lr~~L~~~i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~idp 493 (730)
T 1c4k_A 414 GEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAKWHAYEGYGDNQYYVDP 493 (730)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCTTTCCTTCCTTCEEECT
T ss_pred hhhhHHHHHHHHHHHHHHHHHHhhhCCCeEEccccccccccccccccccccccchhhccCccchhccccccCCcccccCC
Confidence 224566778899999999999988 5787754211 11 1 1
Q ss_pred --EEEEcc----------CCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 316 --ILVDLR----------NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 316 --v~i~~~----------~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+.+.++ +.+.+...+...|.++||.+... ...++|++++..++.
T Consensus 494 ~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~----------~~~~ir~~~s~g~t~ 549 (730)
T 1c4k_A 494 NKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKS----------DLNSILFLMTPAETP 549 (730)
T ss_dssp TEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEE----------CSSEEEEECCTTCCH
T ss_pred eEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEEC----------CCCeEEEEeCCCCCH
Confidence 455553 22345566666666669988643 134689988887764
No 209
>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}
Probab=99.68 E-value=1.5e-15 Score=183.31 Aligned_cols=246 Identities=16% Similarity=0.144 Sum_probs=165.9
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEec
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYG 146 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~ 146 (1342)
++...++++ ++++++|.+.+++++ ||++|+..++.++++|||+|++....|++...... .+...|. +++.++
T Consensus 81 ~p~~~~le~----~lA~l~g~~~~v~~~-sG~~Ai~~al~al~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~--~~~~v~ 153 (430)
T 3ri6_A 81 NPTVEDLEQ----RLKNLTGALGVLALG-SGMAAISTAILTLARAGDSVVTTDRLFGHTLSLFQKTLPSFGI--EVRFVD 153 (430)
T ss_dssp CHHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHTHHHHTTC--EEEEEC
T ss_pred CHHHHHHHH----HHHHHHCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCCchhHHHHHHHHHHHcCC--EEEEeC
Confidence 444445555 899999998877777 99999999999999999999988877765544332 4456676 455556
Q ss_pred CCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 147 LNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 147 ~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
.+ |++++++++++ ++++|+++.+++| ...|+++|+++|+++|++||+|++|+.+.+ ..+.. .+|++
T Consensus 154 ~~-----d~~~l~~ai~~-~t~~v~~e~p~NptG~~~dl~~i~~la~~~g~~livD~a~~~~~~-----~~~~~~g~div 222 (430)
T 3ri6_A 154 VM-----DSLAVEHACDE-TTKLLFLETISNPQLQVADLEALSKVVHAKGIPLVVDTTMTPPYL-----LEAKRLGVDIE 222 (430)
T ss_dssp TT-----CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHTTTCCEEEECTTSCTTT-----CCGGGGTCSEE
T ss_pred CC-----CHHHHHHhhCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCccccc-----CChHHcCCEEE
Confidence 55 89999998876 4567777666665 555999999999999999999999986654 22233 37999
Q ss_pred EecCCccCCCC---CeeEEEEec--hh------------------HHHHhhccCCccccCCcHHHHHHHHHHHHHhccch
Q psy13354 224 TSTTHKSLRGP---RGGFILMKK--KY------------------KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPD 280 (1342)
Q Consensus 224 v~S~sK~l~gp---~GG~iv~~~--~l------------------~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~ 280 (1342)
++|+||+++|+ .||+++.+. .+ +..++.. .....++...+..+++..... +.
T Consensus 223 ~~S~sK~l~g~g~~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~-~~~~~g~~~~~~~a~l~l~~l----~~ 297 (430)
T 3ri6_A 223 VLSSTKFISGGGTSVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKE-VFQNLGPSLSPHNAYLQSLGL----ET 297 (430)
T ss_dssp EEECCCEEETTEEECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHT-HHHHHCCCCCHHHHHHHHHHH----HH
T ss_pred EECCcccccCCCCceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHH-HHHhcCCCCCHHHHHHHHhhh----hh
Confidence 99999999654 458888443 22 1222211 111233333444443332222 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCC----------------CCeEEEEEccCCCCCHHHHHHHHHHCCce
Q psy13354 281 FKIYQKQVVKNAKILSKILDQR-GIRIVSGGT----------------KSHIILVDLRNKKITGKIAESILESANII 340 (1342)
Q Consensus 281 ~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~----------------~~~~v~i~~~~~~~~~~~~~~ll~~~GI~ 340 (1342)
+..+.++..+++.++.+.|.+. ++..+..|. +++++|+.++. .+.+.++++...+.
T Consensus 298 l~~r~~~~~~na~~la~~L~~~p~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l~~----~~~~~~~~~~l~~~ 370 (430)
T 3ri6_A 298 MALRIERSCQNAQELAHWLLSIPQVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFELES----KEASYRFMDALKLI 370 (430)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCTTCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEECSS----HHHHHHHHHHCSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECC----HHHHHHHHHhCCcc
Confidence 4556778899999999999885 455333222 22389999872 35566667665443
No 210
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Probab=99.68 E-value=1.1e-15 Score=183.13 Aligned_cols=295 Identities=12% Similarity=0.071 Sum_probs=182.0
Q ss_pred CCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--CCCC
Q psy13354 38 YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL--NPGD 114 (1342)
Q Consensus 38 ~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~--~pGD 114 (1342)
+.++.+.+++.+.+.. +. ... ..| .. +..+++++.+++++|.+ +.+++++||++|+..++.++. .+||
T Consensus 61 ~~~~~v~~a~~~~~~~-~~--~~~-~~~-~~----~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~~~~~ 131 (395)
T 1vef_A 61 HGNPEVVEAVKRQAET-LM--AMP-QTL-PT----PMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTGRK 131 (395)
T ss_dssp BTCHHHHHHHHHHHHH-CC--CCC-TTS-CC----HHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCHHHHHHHHHHHHh-CC--CCc-ccc-CC----HHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHHhCCC
Confidence 3567799999888853 22 111 122 22 34455666899998654 445555599999999998764 6789
Q ss_pred EEEEeeccCCccchhhHHhhhCCcee----------EEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c-ccC
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWF----------NSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q-YID 182 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~----------~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~-~~~ 182 (1342)
+|++++..+++.... .....|... ....++. .|++++++.+++ +++++++++++++ + ..+
T Consensus 132 ~vi~~~~~y~~~~~~--~~~~~g~~~~~~~~~p~~~~~~~~~~-----~d~~~l~~~i~~-~~~~v~~~~~~~~tG~~~~ 203 (395)
T 1vef_A 132 KFVAAMRGFSGRTMG--SLSVTWEPKYREPFLPLVEPVEFIPY-----NDVEALKRAVDE-ETAAVILEPVQGEGGVRPA 203 (395)
T ss_dssp EEEEETTCCCCSSHH--HHHTCCCHHHHGGGCSCSSCEEEECT-----TCHHHHHHHCCT-TEEEEEECSEETTTTSEEC
T ss_pred eEEEEcCCcCCCchh--hhhhcCCcccccccCCCCCCeeEeCC-----CcHHHHHHHhcc-CEEEEEEeCccCCCCccCC
Confidence 998877655433221 122223210 1222222 389999998874 4677777654443 3 346
Q ss_pred ----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhhccC
Q psy13354 183 ----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINSAVF 254 (1342)
Q Consensus 183 ----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~~~~ 254 (1342)
+++|+++|++||++||+|++|+ +....+.... ... .+|++ |+||+++++.+ |++++++++++.+.....
T Consensus 204 ~~~~l~~i~~l~~~~~~~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~g~~~G~~~~~~~~~~~l~~~~~ 280 (395)
T 1vef_A 204 TPEFLRAAREITQEKGALLILDEIQT-GMGRTGKRFAFEHFGIVPDIL--TLAKALGGGVPLGVAVMREEVARSMPKGGH 280 (395)
T ss_dssp CHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHHHHHTSCTTSS
T ss_pred CHHHHHHHHHHHHHcCCEEEEEeccc-CCccCCchhHhhhcCCCCCEE--EEcccccCCCceEEEEehHHHHhhhccCCc
Confidence 9999999999999999999998 3221121110 111 25766 67999955433 999999887776654222
Q ss_pred CccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEe-eCCCCCeEEEEEccCCCCCHHHHHHH
Q psy13354 255 PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV-SGGTKSHIILVDLRNKKITGKIAESI 333 (1342)
Q Consensus 255 ~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~-~~~~~~~~v~i~~~~~~~~~~~~~~l 333 (1342)
...+ +++...++++..++. ... . ....+++.++++++.+.|.+.+.++. ..+..++++|+.++.. ..++...+
T Consensus 281 ~~~~-~~~~~~~~a~~~al~-~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~g~~~~~~~~~~--~~~l~~~l 354 (395)
T 1vef_A 281 GTTF-GGNPLAMAAGVAAIR-YLE-R-TRLWERAAELGPWFMEKLRAIPSPKIREVRGMGLMVGLELKEK--AAPYIARL 354 (395)
T ss_dssp CCSS-TTCHHHHHHHHHHHH-HHH-H-HTTHHHHHHHHHHHHHHHHTSCCTTEEEEEEETTEEEEEESSC--SHHHHHHH
T ss_pred CCCc-CCCHHHHHHHHHHHH-HHH-h-CCHHHHHHHHHHHHHHHHHHhhcCceEEEEEEEEEEEEEEcCh--HHHHHHHH
Confidence 2222 233334444443433 322 1 34577888999999999988754211 1123457888888653 56777777
Q ss_pred HHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 334 LESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 334 l~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++++||.+.+. + .+++|++++..++
T Consensus 355 ~~~~gi~v~~~-------~---~~~iRi~~~~~~~ 379 (395)
T 1vef_A 355 EKEHRVLALQA-------G---PTVIRFLPPLVIE 379 (395)
T ss_dssp HHHHCEECEES-------S---TTEEEECCCTTCC
T ss_pred HHHCCeEEecC-------C---CCEEEEeCCCCCC
Confidence 73559999863 1 3579998876544
No 211
>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*
Probab=99.68 E-value=5e-16 Score=186.01 Aligned_cols=208 Identities=15% Similarity=0.157 Sum_probs=146.1
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+.+++.+++++|.+++++++ ||++|+..++.+++.+||+|++....|++..... ......|. ++..++.+
T Consensus 68 ~~~l~~~la~~~g~~~~~~~~-sGt~A~~~al~~~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~----- 139 (392)
T 3qhx_A 68 RTALEAALAAVEDAAFGRAFS-SGMAAADCALRAMLRPGDHVVIPDDAYGGTFRLIDKVFTGWNV--EYTPVALA----- 139 (392)
T ss_dssp HHHHHHHHHHHTTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEETTCCHHHHHHHHHTGGGGTC--EEEEECTT-----
T ss_pred HHHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEeCCCcchHHHHHHHHHHhcCc--EEEEeCCC-----
Confidence 344555999999998766666 9999999999999999999998887776543333 22345566 45555654
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|++++++++++ ++++|++.+++++ ...++++|+++|++||+++|+|++|+.+.. ..+.. .+|+++.|+||+
T Consensus 140 d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~la~~~g~~li~D~~~~~~~~-----~~~~~~~~di~~~S~sK~ 213 (392)
T 3qhx_A 140 DLDAVRAAIRP-TTRLIWVETPTNPLLSIADIAGIAQLGADSSAKVLVDNTFASPAL-----QQPLSLGADVVLHSTTKY 213 (392)
T ss_dssp CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTT-----CCGGGGTCSEEEEETTTT
T ss_pred CHHHHHHhhCC-CCeEEEEECCCCCCcEEecHHHHHHHHHHcCCEEEEECCCccccc-----CChHHhCCcEEEEcCccc
Confidence 89999999876 4566666666655 445999999999999999999999975532 11222 369999999999
Q ss_pred CCCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 231 LRGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 231 l~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
++++. ||++++++ ++.+.+......+ +....+..+++.....+ .+....++..+++.++.+.|.+.
T Consensus 214 lg~~g~~~~G~v~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~l~----~l~~~~~~~~~~~~~l~~~L~~~ 283 (392)
T 3qhx_A 214 IGGHSDVVGGALVTNDEELDQSFAFLQNGA--GAVPGPFDAYLTMRGLK----TLVLRMQRHSENAAAVAEFLAEH 283 (392)
T ss_dssp TTCSSCCCCEEEEESCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHHT----THHHHHHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCceEEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHhcC
Confidence 95543 59999984 7777766532222 22223333333333222 34456778888999999999875
No 212
>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*
Probab=99.67 E-value=4.9e-15 Score=177.81 Aligned_cols=247 Identities=16% Similarity=0.207 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+++++.+++++|.+++++++ +|++|+..++.+++.+||+|+++...|+++...... ....|. .+..++.+
T Consensus 67 ~~~l~~~la~~~g~~~~i~~~-sG~~a~~~~l~~~~~~gd~vl~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~----- 138 (398)
T 1gc0_A 67 LNLLEARMASLEGGEAGLALA-SGMGAITSTLWTLLRPGDEVLLGNTLYGCTFAFLHHGIGEFGV--KLRHVDMA----- 138 (398)
T ss_dssp HHHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESSCCSHHHHHHHHTGGGGTC--EEEEECTT-----
T ss_pred HHHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHHHhcCCCEEEEeCCCchhHHHHHHHHHHHcCC--EEEEECCC-----
Confidence 344555899999988776666 999999999999999999999888777665443322 245566 44544543
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|++++++.+++ ++++|++++++++ ...++++|+++|++||+++|+|++|+.+.... ++. .+|+++.|+||+
T Consensus 139 d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~~-----~~~~~~d~~~~S~sK~ 212 (398)
T 1gc0_A 139 DLQALEAAMTP-ATRVIYFESPANPNMHMADIAGVAKIARKHGATVVVDNTYCTPYLQR-----PLELGADLVVHSATKY 212 (398)
T ss_dssp CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHGGGTCEEEEECTTTHHHHCC-----GGGGTCSEEEEETTTT
T ss_pred CHHHHHHhcCC-CCeEEEEECCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccCC-----chhhCceEEEECCccc
Confidence 89999998875 5567777666665 45599999999999999999999998776522 122 369999999999
Q ss_pred CCCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cE
Q psy13354 231 LRGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IR 305 (1342)
Q Consensus 231 l~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~ 305 (1342)
++++. ||+++++++.++ .+...... .+++..++..++++.+.. + .+....++..+++..+.+.|.+.+ +.
T Consensus 213 ~~~~~~~~~G~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l---~-~~~~~~~~~~~~~~~l~~~L~~~~~v~ 287 (398)
T 1gc0_A 213 LSGHGDITAGIVVGSQALVDRIRLQGLKD-MTGAVLSPHDAALLMRGI---K-TLNLRMDRHCANAQVLAEFLARQPQVE 287 (398)
T ss_dssp TTCSSSCCCEEEEECHHHHHHHHHTHHHH-HTCCCCCHHHHHHHHHHH---T-THHHHHHHHHHHHHHHHHHHHTCTTEE
T ss_pred cCCCCCCeEEEEEEChHHHHHHHHHHhhc-cCCCCCCHHHHHHHHhcc---c-hHHHHHHHHHHHHHHHHHHHhcCCCee
Confidence 96665 599999987655 45432221 022222333333322222 2 445567788888999999988743 21
Q ss_pred E--------------eeC--CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 306 I--------------VSG--GTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 306 ~--------------~~~--~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
. ... ...++++.+.++. ..+.+..++++.++.+..
T Consensus 288 ~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~---~~~~~~~~l~~~~i~~~~ 338 (398)
T 1gc0_A 288 LIHYPGLASFPQYTLARQQMSQPGGMIAFELKG---GIGAGRRFMNALQLFSRA 338 (398)
T ss_dssp EEEEC----------------CCTTEEEEEETT---HHHHHHHHHHHCSSSEEC
T ss_pred EEECCCCCCCcCHHHHHhhCCCCceEEEEEECC---CHHHHHHHHHhCCCceec
Confidence 1 100 1235677777653 235677788888888765
No 213
>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}
Probab=99.67 E-value=4.6e-15 Score=178.89 Aligned_cols=245 Identities=18% Similarity=0.184 Sum_probs=160.9
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKID 154 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id 154 (1342)
+++++++++++|.+++++++ ||++|+..++.+++.+||+|+++...|++....+. .+...|. +++.++. |
T Consensus 59 ~~l~~~la~~~g~~~~~~~~-~gt~a~~~al~~l~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~------~ 129 (412)
T 2cb1_A 59 KALEERLKALEGALEAVVLA-SGQAATFAALLALLRPGDEVVAAKGLFGQTIGLFGQVLSLMGV--TVRYVDP------E 129 (412)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHTTCCTTCEEEEETTCCHHHHHHHHHTTTTTTC--EEEEECS------S
T ss_pred HHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEeCCCchhHHHHHHHHHHHcCC--EEEEECC------C
Confidence 33555899999988665555 99999999999999999999988876654333322 1344566 4454453 4
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
++++++.+++ ++++|++++++++ ...++++|+++|++||+++|+|++|+.+... ..+.. ..|++++|+||++
T Consensus 130 ~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~l~~~~~~~li~D~~~~~~~~~----~~~~~~~~di~~~S~~K~~ 204 (412)
T 2cb1_A 130 PEAVREALSA-KTRAVFVETVANPALLVPDLEALATLAEEAGVALVVDNTFGAAGAL----CRPLAWGAHVVVESLTKWA 204 (412)
T ss_dssp HHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGTTTTS----CCGGGGTCSEEEEETTTTT
T ss_pred HHHHHHHhcc-CCeEEEEeCCCCCCcccccHHHHHHHHHHcCCEEEEECCCcccccc----CCccccCCeEEEECCcccc
Confidence 8899988865 4566666665555 4459999999999999999999999876211 11222 3799999999999
Q ss_pred CCCCe--eEEE-Eec---------------------------hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchH
Q psy13354 232 RGPRG--GFIL-MKK---------------------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDF 281 (1342)
Q Consensus 232 ~gp~G--G~iv-~~~---------------------------~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~ 281 (1342)
+++.+ |+++ .++ ++.+.++... ....+....+..+++... . + +.+
T Consensus 205 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r~~~-~~~~g~~~~~~~a~~~~~--~-l-~~l 279 (412)
T 2cb1_A 205 SGHGSVLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVRTLG-LSLCGMALSPFNAYLLFQ--G-L-ETV 279 (412)
T ss_dssp TCSSCCCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHHHHH-TTTTCCCCCHHHHHHHHH--H-G-GGH
T ss_pred cCCCCcEEEEEEeccccccccccccccccccccchhhccchHHHHHHHHHHH-HHhcCCCCChHHhHHHHc--C-C-chH
Confidence 66544 4444 552 2334444322 011122223333332222 2 2 244
Q ss_pred HHHHHHHHHHHHHHHHHHHhC-CcEEee-CC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCCceeeec
Q psy13354 282 KIYQKQVVKNAKILSKILDQR-GIRIVS-GG---------------TKSHIILVDLRNKKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 282 ~~~~~~l~~~a~~l~~~L~~~-g~~~~~-~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
....++..++++++.+.|.+. ++..+. ++ ..+.++.+.+ + +.+.+..++++.||.+ ..
T Consensus 280 ~~~~~~~~~~~~~l~~~L~~~~~v~~v~~p~~~~~p~~~~~~~~~~~~~~iv~~~~-~---~~~~~~~~l~~~~i~~-~~ 354 (412)
T 2cb1_A 280 ALRVARMSETARFLAERLQGHPKVKALRYPGLPEDPAHRNARKYLASGGPILTLDL-G---DLERASRFLGAIRLLK-AA 354 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCTTCSEEECTTSTTCTTHHHHHHHCSSSCSEEEEEC-S---SHHHHHHHHHHCSSEE-CS
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEe-C---CHHHHHHHHHhCCeee-ec
Confidence 556677788999999999885 666442 21 2345777877 3 4567788888889998 55
No 214
>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*
Probab=99.67 E-value=5.7e-16 Score=185.94 Aligned_cols=250 Identities=16% Similarity=0.153 Sum_probs=163.8
Q ss_pred HHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCC
Q psy13354 73 LIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKE 151 (1342)
Q Consensus 73 ~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~ 151 (1342)
+..+++++++++++|.+++++++ +|++|+..++.+++.+||+|++....|+++..... .....|. +++.++.+
T Consensus 64 ~~~~~l~~~la~~~g~~~~i~~~-sG~~a~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--~~~~v~~~--- 137 (398)
T 2rfv_A 64 PTTDALEKKLAVLERGEAGLATA-SGISAITTTLLTLCQQGDHIVSASAIYGCTHAFLSHSMPKFGI--NVRFVDAA--- 137 (398)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEEESSSCHHHHHHHHTHHHHTTC--EEEEECTT---
T ss_pred hHHHHHHHHHHHHhCCCcEEEEC-CHHHHHHHHHHHHhCCCCEEEEcCCCcccHHHHHHHHHHHcCC--EEEEeCCC---
Confidence 34444566999999988666666 89999999999999999999988766655433321 1255566 45555554
Q ss_pred CCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCC
Q psy13354 152 KIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTH 228 (1342)
Q Consensus 152 ~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~s 228 (1342)
|++++++.+++ +++++++++++++ ...++++|+++|++||+++|+|++|+.+.+.. ++. .+|++++|+|
T Consensus 138 --d~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~l~~~~~~~li~De~~~~~~~~~-----~~~~~~di~~~s~s 209 (398)
T 2rfv_A 138 --KPEEIRAAMRP-ETKVVYIETPANPTLSLVDIETVAGIAHQQGALLVVDNTFMSPYCQQ-----PLQLGADIVVHSVT 209 (398)
T ss_dssp --SHHHHHHHCCT-TEEEEEEESSBTTTTBCCCHHHHHHHHHHTTCEEEEECTTTCTTTCC-----GGGGTCSEEEEETT
T ss_pred --CHHHHHHhcCC-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCCcccccCC-----chhhCCcEEEEeCc
Confidence 89999998875 4567777666666 44599999999999999999999998765521 222 3699999999
Q ss_pred ccCCCCC---eeEEEEechhHH-HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-
Q psy13354 229 KSLRGPR---GGFILMKKKYKK-IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG- 303 (1342)
Q Consensus 229 K~l~gp~---GG~iv~~~~l~~-~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g- 303 (1342)
|+++++. ||++++++++++ .+......+..++.+...+.++..++ + ......+++.+++..+.+.|.+.+
T Consensus 210 K~~~~~g~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l-~----~~~~~~~~~~~~~~~l~~~l~~~~~ 284 (398)
T 2rfv_A 210 KYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGV-K----TLGIRMERHCENALKIARFLEGHPS 284 (398)
T ss_dssp TTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHH-T----THHHHHHHHHHHHHHHHHHHHTCTT
T ss_pred ccccCCCCceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhh-h----hHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 9996654 499999998776 55432221101223233333333333 2 233445667778888888887753
Q ss_pred cEEe-eC---------------CCCCeEEEEEccCCCCCHHHHHHHHHHC---Cceeeec
Q psy13354 304 IRIV-SG---------------GTKSHIILVDLRNKKITGKIAESILESA---NIICNKN 344 (1342)
Q Consensus 304 ~~~~-~~---------------~~~~~~v~i~~~~~~~~~~~~~~ll~~~---GI~v~~~ 344 (1342)
+.-+ .+ ...++++++.+++. .+....++++. |+.+.++
T Consensus 285 v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~---~~~~~~l~~~~~~~~i~~~~G 341 (398)
T 2rfv_A 285 ITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGG---LEAGRRMINSVELCLLAVSLG 341 (398)
T ss_dssp EEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH---HHHHHHHHTTCSSSEECSCCS
T ss_pred eeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCC---HHHHHHHHHhCCcceeccCCC
Confidence 1111 00 12466778887642 23455566554 5555443
No 215
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A
Probab=99.67 E-value=1.6e-15 Score=184.18 Aligned_cols=295 Identities=17% Similarity=0.116 Sum_probs=175.4
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL-------- 110 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~-------- 110 (1342)
.+|.+.+++.+.+.. +. .... .+ .. +...++++.+++++|.+.+++ ++||++|+..++.++.
T Consensus 82 ~~p~v~~ai~~~~~~-~~--~~~~-~~-~~----~~~~~l~~~la~~~g~~~v~~-~~sGseA~~~al~~a~~~~~~~~g 151 (433)
T 1z7d_A 82 CHPNILNAMINQAKN-LT--ICSR-AF-FS----VPLGICERYLTNLLGYDKVLM-MNTGAEANETAYKLCRKWGYEVKK 151 (433)
T ss_dssp TCHHHHHHHHHHHTT-CS--CCCT-TS-EE----HHHHHHHHHHHHHHTCSEEEE-ESSHHHHHHHHHHHHHHHHHHTSC
T ss_pred CCHHHHHHHHHHHHh-CC--CccC-Cc-CC----HHHHHHHHHHHhhcCCCeEEE-eCCHHHHHHHHHHHHHHHhhhccC
Confidence 457799998888742 21 1111 12 22 334445568888888765544 4499999999998753
Q ss_pred -CCC-CEEEEeeccCCccchhhHHhhhCC-------c---eeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC
Q psy13354 111 -NPG-DTIMGMSLQEGGHLTHGMMLNMSG-------K---WFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS 178 (1342)
Q Consensus 111 -~pG-D~Vlv~~~~~~~~~s~~~~~~~~g-------~---~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~ 178 (1342)
.+| |+|++.+..+.++.... +...| . ...+..++.+ |++++++++...++++|++.+.+++
T Consensus 152 ~~~gr~~vi~~~~~yhg~~~~~--~~~~g~~~~~~~~~p~~~~v~~~~~~-----d~~~le~~l~~~~~~~vi~ep~~~~ 224 (433)
T 1z7d_A 152 IPENMAKIVVCKNNFSGRTLGC--ISASTTKKCTSNFGPFAPQFSKVPYD-----DLEALEEELKDPNVCAFIVEPIQGE 224 (433)
T ss_dssp CCTTCCEEEEETTC----------------------------CEEEECTT-----CHHHHHHHHTSTTEEEEEECSSBST
T ss_pred CCCCCCeEEEEeCCcCCcchhh--hcccCCccccccCCCCCCCeEEeCCC-----CHHHHHHHhCCCCEEEEEEECCCCC
Confidence 467 99998776554432211 11111 0 0123334443 8999999985345567776553322
Q ss_pred -c-----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--CeeEEEEechhHH
Q psy13354 179 -Q-----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--RGGFILMKKKYKK 247 (1342)
Q Consensus 179 -~-----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~GG~iv~~~~l~~ 247 (1342)
+ ..++++|.++|++||++||+||+|. |+...+... .... .+|++ |+||++++. .+|++++++++++
T Consensus 225 ~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~sK~l~~G~~~~G~v~~~~~~~~ 301 (433)
T 1z7d_A 225 AGVIVPSDNYLQGVYDICKKYNVLFVADEVQT-GLGRTGKLLCVHHYNVKPDVI--LLGKALSGGHYPISAVLANDDIML 301 (433)
T ss_dssp TTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCCEEEEECHHHHT
T ss_pred CCccCCCHHHHHHHHHHHHHcCCEEEEecCcc-CCCcCCcchhhHhcCCCCCEE--EECccccCCCCCeEEEEECHHHHh
Confidence 2 2279999999999999999999996 422222211 1111 25776 677999543 4699999998887
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEee-CCCCCeEEEEEccCC-
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVS-GGTKSHIILVDLRNK- 323 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~-~~~~~~~v~i~~~~~- 323 (1342)
.+......+.++. ++..++++.+..+.+.+ +.+.+++.++++++.+.|.+. +++... .+..+.++++.++..
T Consensus 302 ~l~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~g~~~~i~~~~~~ 377 (433)
T 1z7d_A 302 VIKPGEHGSTYGG--NPLAASICVEALNVLIN--EKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNEL 377 (433)
T ss_dssp TCCTTCCCCTTTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHTTCTTEEEEEEETTEEEEEECTTT
T ss_pred hhccccccccCCC--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHHhCCCeEEEEeeeeEEEEEEccCh
Confidence 7655333333433 33434444444444321 245678888899999988774 442111 112456788888754
Q ss_pred CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 324 KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 324 ~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
....++...+++ +||.+.+. + .+.+|++++..++
T Consensus 378 ~~~~~~~~~l~~-~Gv~v~~~-------~---~~~iRi~~~~~~t 411 (433)
T 1z7d_A 378 VNVLDICLKLKE-NGLITRDV-------H---DKTIRLTPPLCIT 411 (433)
T ss_dssp CCHHHHHHHHHH-TTEECCEE-------T---TTEEEECCCTTCC
T ss_pred hHHHHHHHHHHH-CCeEEecC-------C---CCEEEEECCcCCC
Confidence 234456666665 59999864 1 3469998876544
No 216
>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*
Probab=99.66 E-value=5e-15 Score=177.14 Aligned_cols=245 Identities=17% Similarity=0.126 Sum_probs=167.1
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecCCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGLNKKEKID 154 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~~~~~~id 154 (1342)
..+++.+++++|.+++++++ ||++|+..++.+++.+||+|+++...|++...... .....|. +++.++.. |
T Consensus 62 ~~l~~~la~~~g~~~~i~~~-sG~~ai~~~~~~~~~~gd~vl~~~~~y~~~~~~~~~~~~~~g~--~~~~v~~~-----d 133 (389)
T 3acz_A 62 EQFEEMVCSIEGAAGSAAFG-SGMGAISSSTLAFLQKGDHLIAGDTLYGCTVSLFTHWLPRFGI--EVDLIDTS-----D 133 (389)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHHHHTTTCCTTCEEEEESSCCHHHHHHHHHHHHHTTC--EEEEECTT-----C
T ss_pred HHHHHHHHHHhCCCeEEEeC-CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC--EEEEECCC-----C
Confidence 33445899999998777766 89999999999999999999988877665433322 2455676 44444543 8
Q ss_pred HHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccC
Q psy13354 155 YKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSL 231 (1342)
Q Consensus 155 ~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l 231 (1342)
++++++.+++ ++++|++++++++ ...|+++|+++|++||+++|+|++|+.+... .+++ .+|++++|+||++
T Consensus 134 ~~~l~~~i~~-~~~~v~~~~~~nptG~~~~l~~i~~~~~~~~~~livD~~~~~~~~~-----~~~~~~~di~~~S~sK~~ 207 (389)
T 3acz_A 134 VEKVKAAWKP-NTKMVYLESPANPTCKVSDIKGIAVVCHERGARLVVDATFTSPCFL-----KPLELGADIALHSVSKYI 207 (389)
T ss_dssp HHHHHHTCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECTTTCTTTC-----CGGGTTCSEEEEETTTTT
T ss_pred HHHHHHhcCC-CCeEEEEECCCCCCCeecCHHHHHHHHHHcCCEEEEECCCcccccc-----CccccCCeEEEECChhhc
Confidence 9999998875 4567776666665 4559999999999999999999999766431 1222 3799999999999
Q ss_pred CCCC---eeEEEEec-hhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEE
Q psy13354 232 RGPR---GGFILMKK-KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRI 306 (1342)
Q Consensus 232 ~gp~---GG~iv~~~-~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~ 306 (1342)
+++. ||++++++ ++++.+......+ ++..++..++++.... . .+....++..+++..+.+.|++.+ +.-
T Consensus 208 ~~~~~~~~G~v~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~l---~-~l~~r~~~~~~~~~~l~~~l~~~~~v~~ 281 (389)
T 3acz_A 208 NGHGDVIGGVSSAKTAEDIATIKFYRKDA--GSLMAPMDAFLCARGM---K-TLPIRMQIHMENGLKVAKFLEQHEKIVK 281 (389)
T ss_dssp TCSSCCCCEEEEESSHHHHHHHHHHHHHH--CCCCCHHHHHHHHHHH---T-THHHHHHHHHHHHHHHHHHHHHCTTEEE
T ss_pred cCCCCceeEEEEECcHHHHHHHHHHHHhc--CCCCCHHHHHHHHcCc---c-HHHHHHHHHHHHHHHHHHHHHcCCCeeE
Confidence 6664 49999999 8888776543222 2222333333222222 2 344456777888888888888753 211
Q ss_pred e-eC---------------CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeec
Q psy13354 307 V-SG---------------GTKSHIILVDLRNKKITGKIAESILESANIICNKN 344 (1342)
Q Consensus 307 ~-~~---------------~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+ .+ ...+.++.+.+++ .+....++++.||.+...
T Consensus 282 ~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~----~~~~~~~l~~~~i~~~~~ 331 (389)
T 3acz_A 282 VNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS----FEAAKKLMEHLKVCTLAV 331 (389)
T ss_dssp EECTTSTTSTTHHHHHHHCSSCCSEEEEEESS----HHHHHHHHTTCSSSEEBS
T ss_pred EECCCCCCCccHHHHHhhCCCCCeEEEEEECC----HHHHHHHHHhCCCcEECc
Confidence 1 11 0124567777753 456777888889888763
No 217
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.66 E-value=9.1e-16 Score=180.66 Aligned_cols=195 Identities=14% Similarity=0.166 Sum_probs=146.2
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCc
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGI 448 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~ 448 (1342)
.+..++.+.+|++++|++.+++.|.+++. ....++++|||||||||||++|+++++.+++
T Consensus 40 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~--------- 110 (355)
T 2qp9_X 40 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS--------- 110 (355)
T ss_dssp -------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTC---------
T ss_pred hhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCC---------
Confidence 45567889999999999999999998873 1244567999999999999999999999863
Q ss_pred ccCCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH---------
Q psy13354 449 TSQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------- 513 (1342)
Q Consensus 449 ~~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------- 513 (1342)
.++.++++. ......++.++..+.. ..+.||+|||+|.+..
T Consensus 111 --------------------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~r~~~~~~~ 166 (355)
T 2qp9_X 111 --------------------TFFSVSSSDLVSKWMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGESEA 166 (355)
T ss_dssp --------------------EEEEEEHHHHHSCC---CHHHHHHHHHHHHH----TSSEEEEEECGGGGTC------CTH
T ss_pred --------------------CEEEeeHHHHhhhhcchHHHHHHHHHHHHHH----cCCeEEEEechHhhcccCCCCcchH
Confidence 233333221 1122345555555432 3457999999998852
Q ss_pred --HHHHHHHHhhc---CCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 514 --HAFNAMLKTLE---EPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 514 --~~~~~Ll~~Le---~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
...+.|+..++ .++..+++|++||.++.+.+++++|+ ..+.+++|+.++...++..++...+..+++..++.|+
T Consensus 167 ~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la 246 (355)
T 2qp9_X 167 SRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLG 246 (355)
T ss_dssp HHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccccCCCeEEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHH
Confidence 24677777776 34567888999999999999999999 8899999999999999999999888888999999999
Q ss_pred HhcCC-cHHHHHHHHHHHHhh
Q psy13354 588 TGAQG-SMRDALSLTDQAINY 607 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~ 607 (1342)
+.+.| +.+++.++++.++..
T Consensus 247 ~~t~G~sg~dl~~l~~~A~~~ 267 (355)
T 2qp9_X 247 AMTEGYSGSDIAVVVKDALMQ 267 (355)
T ss_dssp HHTTTCCHHHHHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHH
Confidence 99987 777888888776544
No 218
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*
Probab=99.66 E-value=9.6e-16 Score=187.92 Aligned_cols=308 Identities=18% Similarity=0.183 Sum_probs=177.6
Q ss_pred HHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCC-----C--
Q psy13354 41 LAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNP-----G-- 113 (1342)
Q Consensus 41 ~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~p-----G-- 113 (1342)
+.+.+++.+.+.. + ...|+..+...++++ ++++++|.+++++++ ||++|+..++.++..+ |
T Consensus 53 ~~v~~a~~~~l~~----~---~~~y~~~~~~~~l~~----~la~~~~~~~v~~t~-~gt~A~~~al~~~~~~~~~~~G~~ 120 (467)
T 2oqx_A 53 GAVTQSMQAAMMR----G---DEAYSGSRSYYALAE----SVKNIFGYQYTIPTH-QGRGAEQIYIPVLIKKREQEKGLD 120 (467)
T ss_dssp SCCCHHHHHHTTS----C---CCCSSSCHHHHHHHH----HHHHHHCCSEEEEEC---CCSHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHhcc----C---cceeccCchhHHHHH----HHHHHhCcCcEEEcC-CcHHHHHHHHHHHhccccccCCCC
Confidence 5677777666531 1 123455555556655 888888887665555 9999999999999888 8
Q ss_pred --CEEEEeeccCCccchhhHHhhhCCceeEEEE----ecCC----CCCCCCHHHHHHHHHh---cCCeEEEEcCCCCC--
Q psy13354 114 --DTIMGMSLQEGGHLTHGMMLNMSGKWFNSIC----YGLN----KKEKIDYKKVEYLAKK---NKPKLIIAGASAYS-- 178 (1342)
Q Consensus 114 --D~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~----~~~~----~~~~id~e~Le~~i~~---~~~~liv~~~s~~~-- 178 (1342)
|+|++. ..|. .+........|....... ++.+ .++.+|++++++++++ .++++|++++++++
T Consensus 121 ~~d~Ii~~-~~h~--~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~g 197 (467)
T 2oqx_A 121 RSKMVAFS-NYFF--DTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAG 197 (467)
T ss_dssp TTTCEEEE-SSCC--HHHHHHHHHTTCEEEECBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGG
T ss_pred ccceEEec-cccc--ccchhhhhccCcceeeccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCC
Confidence 997754 2221 111122223333211111 1122 3467899999999985 24555665555444
Q ss_pred c----ccCHHHHHHHHHHcCCEEEEEcccch-hhh--------hcCCCCCCC-----CCCcEEEecCCccCCCCCeeEEE
Q psy13354 179 Q----YIDFERFYHIAKNINSYFMVDMAHYA-GLI--------AAGEYPNPV-----PFADFITSTTHKSLRGPRGGFIL 240 (1342)
Q Consensus 179 ~----~~~l~~I~~la~~~gi~LIvDea~~~-g~~--------~~~~~~~~l-----~~~Divv~S~sK~l~gp~GG~iv 240 (1342)
+ ..++++|+++|++||++||+|++|.. +.+ ..+.....+ ..+|++++|+||+++.+.||+++
T Consensus 198 G~~~~~~~l~~i~~la~~~gi~li~D~a~~~e~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~s~sK~~g~~~Gg~~~ 277 (467)
T 2oqx_A 198 GQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLC 277 (467)
T ss_dssp CBCCCHHHHHHHHHHHHHTTCCEEEECTTHHHHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEE
T ss_pred CccCCHHHHHHHHHHHHHcCCEEEEEchhhhhhhhhcccccccccCccHHHHhhhhhccCCeEEEecccccCCCCceEEE
Confidence 2 23689999999999999999988876 432 111111111 23688899999999555589999
Q ss_pred Eech-hHHHH---hhcc--CC--ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCcEEeeCCCC
Q psy13354 241 MKKK-YKKII---NSAV--FP--GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTK 312 (1342)
Q Consensus 241 ~~~~-l~~~l---~~~~--~~--~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~~~~~~~~~ 312 (1342)
++++ +++.+ +... .. ...++......+++...+.+... ++..++..++++++.+.|.+.|+++. +..
T Consensus 278 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~l~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~--~~~ 352 (467)
T 2oqx_A 278 MKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN---LDWLAYRIAQVQYLVDGLEEIGVVCQ--QAG 352 (467)
T ss_dssp ECSGGGHHHHHHHHHHHHHTTSSCCCCCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHHHHTTCCEE--EEC
T ss_pred ecChhHHHHHHHHHHhhhccCCcccccchhhhHHHHHHHhhHhhhh---HHHHHHHHHHHHHHHHHHHHCCCeee--cCC
Confidence 8877 44433 2211 11 11222222222222222222221 12345567888999999988887765 345
Q ss_pred CeEEEEEccC---CCC-----CHHHHHHHHHHCCceeeeccC--CCC-C--C--Ccccccccccccccc-cc
Q psy13354 313 SHIILVDLRN---KKI-----TGKIAESILESANIICNKNSI--PND-P--E--KPYFTSGIRLGSSAI-TT 368 (1342)
Q Consensus 313 ~~~v~i~~~~---~~~-----~~~~~~~ll~~~GI~v~~~~~--p~~-~--~--~~~~~~~lRi~~~~~-~t 368 (1342)
++++|+.++. ... ...+...++.++||.+.+... ++. + + .+...+.+|++++.. ++
T Consensus 353 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t 424 (467)
T 2oqx_A 353 GHAAFVDAGKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYT 424 (467)
T ss_dssp SSCEEEEHHHHSTTSCGGGCHHHHHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSC
T ss_pred ceEEEEechhhcccCCcccccHHHHHHHHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCC
Confidence 7788888752 111 123366664667999987431 110 0 0 001135799998875 44
No 219
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.66 E-value=8.8e-16 Score=178.66 Aligned_cols=192 Identities=14% Similarity=0.180 Sum_probs=150.0
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcc
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGIT 449 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~ 449 (1342)
+..++.+..|++++|++.+++.|.+.+. .+..++++|||||||||||++|+++++.+++
T Consensus 8 ~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~---------- 77 (322)
T 3eie_A 8 ILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANS---------- 77 (322)
T ss_dssp SEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTC----------
T ss_pred eeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCC----------
Confidence 4567888999999999999999999882 2345678999999999999999999999863
Q ss_pred cCCCCCCcchhhhccCCCccEEEEccCCC--c----CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH----------
Q psy13354 450 SQPCGKCSVCVKIDNGCFMDYIEMDAAST--R----GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---------- 513 (1342)
Q Consensus 450 ~~~c~~~~~~~~~~~~~~~d~~~i~~~~~--~----~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---------- 513 (1342)
.++.++++.. . ....++.++..+.. ..+.||+|||+|.+..
T Consensus 78 -------------------~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~ 134 (322)
T 3eie_A 78 -------------------TFFSVSSSDLVSKWMGESEKLVKQLFAMARE----NKPSIIFIDQVDALTGTRGEGESEAS 134 (322)
T ss_dssp -------------------EEEEEEHHHHHTTTGGGHHHHHHHHHHHHHH----TSSEEEEEECGGGGSCC------CCT
T ss_pred -------------------CEEEEchHHHhhcccchHHHHHHHHHHHHHh----cCCeEEEechhhhhhccCCCCcchHH
Confidence 3444544311 1 11234555554433 3456999999998742
Q ss_pred -HHHHHHHHhhc---CCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 -HAFNAMLKTLE---EPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 -~~~~~Ll~~Le---~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++ .....+++|.+||.++.+.+++.+|+ ..+.++.|+.++..++++.+++..+..++++.++.|++
T Consensus 135 ~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~ 214 (322)
T 3eie_A 135 RRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGA 214 (322)
T ss_dssp HHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhccccccCCceEEEEecCChhhCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHH
Confidence 23577777776 45567888999999999999999999 78999999999999999999999888899999999999
Q ss_pred hcCC-cHHHHHHHHHHHH
Q psy13354 589 GAQG-SMRDALSLTDQAI 605 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~ 605 (1342)
.+.| +.+++.+++..+.
T Consensus 215 ~t~g~sg~di~~l~~~a~ 232 (322)
T 3eie_A 215 MTEGYSGSDIAVVVKDAL 232 (322)
T ss_dssp TTTTCCHHHHHHHHHHHT
T ss_pred HcCCCCHHHHHHHHHHHH
Confidence 9977 6777777666543
No 220
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}
Probab=99.66 E-value=4.3e-15 Score=177.92 Aligned_cols=307 Identities=14% Similarity=0.086 Sum_probs=178.1
Q ss_pred Cceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++ .+++ +|.+.+++.+.+. .+..++ .. ... +...++++++++++|.+.+++ ++||++|+
T Consensus 37 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~-~~~~~~--~~--~~~----~~~~~l~~~la~~~~~~~v~~-~~gg~ea~ 106 (395)
T 3nx3_A 37 KYLDFSSGIGVCALGYNHAKFNAKIKAQVD-KLLHTS--NL--YYN----ENIAAAAKNLAKASALERVFF-TNSGTESI 106 (395)
T ss_dssp EEEESSHHHHTCTTCBSCHHHHHHHHHHHT-TCSCCC--TT--SBC----HHHHHHHHHHHHHHTCSEEEE-ESSHHHHH
T ss_pred EEEECCCcHHhccCCCCCHHHHHHHHHHHH-hccccc--cc--cCC----HHHHHHHHHHHHhcCCCeEEE-eCCHHHHH
Confidence 44666665 3444 5779999888874 222111 11 112 444556668999998655555 44999999
Q ss_pred HHHHHHcc-------CCCCEEEEeeccCCccchhhHHhh--------hCCceeEEEEecCCCCCCCCHHHHHHHHHhcCC
Q psy13354 103 QAVFFSVL-------NPGDTIMGMSLQEGGHLTHGMMLN--------MSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKP 167 (1342)
Q Consensus 103 ~~al~al~-------~pGD~Vlv~~~~~~~~~s~~~~~~--------~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~ 167 (1342)
..++.++. .++|+|++.+..+.+......... ..........++.+ |++++++++++ ++
T Consensus 107 ~~al~~~~~~~~~~g~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~-~~ 180 (395)
T 3nx3_A 107 EGAMKTARKYAFNKGVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYN-----DISSVEKLVNE-KT 180 (395)
T ss_dssp HHHHHHHHHHHHHTTCTTCEEEEETTCCCCSSHHHHTTCCCHHHHGGGCSCCSCEEEECTT-----CHHHHHTTCCT-TE
T ss_pred HHHHHHHHHHhhccCCCCCEEEEEcCCcCCCCHHHHhhcCCcccccccCCCCCCcEEeCCC-----CHHHHHHhccC-Ce
Confidence 99998775 457999987766654432211110 00111133333443 79999988864 34
Q ss_pred eEEEEcC-CCCC-cccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCccCCCCCe-eE
Q psy13354 168 KLIIAGA-SAYS-QYID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHKSLRGPRG-GF 238 (1342)
Q Consensus 168 ~liv~~~-s~~~-~~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp~G-G~ 238 (1342)
+++++.+ ++++ ...+ +++|+++|++||++||+||+|. +|..+......... ..|++ ++||+++++.+ |+
T Consensus 181 ~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~--t~sK~~~~G~~~G~ 258 (395)
T 3nx3_A 181 CAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDIM--TSAKALGCGLSVGA 258 (395)
T ss_dssp EEEEEESEECTTSCEECCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEE--EECGGGTTTSCCEE
T ss_pred EEEEEeCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCCcCCcchhHHhcCCCCCEE--EecccccCCCceEE
Confidence 5555544 3333 2224 9999999999999999999986 32221100001111 14665 56699954222 99
Q ss_pred EEEechh-HHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CC-cEEeeCCCC
Q psy13354 239 ILMKKKY-KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RG-IRIVSGGTK 312 (1342)
Q Consensus 239 iv~~~~l-~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g-~~~~~~~~~ 312 (1342)
+++++++ ++.+........++. +...++++.++ .+...+ ++..+++.++.+++++.|.+ .+ +.... ..
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~aa-l~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~ 332 (395)
T 3nx3_A 259 FVINQKVASNSLEAGDHGSTYGG-NPLVCAGVNAV-FEIFKE--EKILENVNKLTPYLEQSLDELINEFDFCKKRK--GL 332 (395)
T ss_dssp EEECHHHHHHHSCTTCCSSCBSC-CHHHHHHHHHH-HHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EE
T ss_pred EEEchhhhhhhcCCcccCCCCCC-CHHHHHHHHHH-HHHHHh--hHHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--eE
Confidence 9999988 777765433333332 23333433333 333211 23345555666666666554 23 22222 34
Q ss_pred CeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 313 SHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 313 ~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++++++.++......++...+++ +||.+.+.. .+++|++++..++.
T Consensus 333 g~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~----------~~~iRi~~~~~~t~ 378 (395)
T 3nx3_A 333 GFMQGLSLDKSVKVAKVIQKCQE-NALLLISCG----------ENDLRFLPPLILQK 378 (395)
T ss_dssp TTEEEEEECTTSCHHHHHHHHHH-TTEECEEET----------TTEEEECCCTTCCH
T ss_pred EEEEEEEeCCcchHHHHHHHHHH-CCCEEecCC----------CCEEEEECCCCCCH
Confidence 56888888765444556666655 599998652 35799987776554
No 221
>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*
Probab=99.65 E-value=5.2e-15 Score=177.97 Aligned_cols=241 Identities=11% Similarity=0.095 Sum_probs=162.4
Q ss_pred HHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCCCH
Q psy13354 77 IAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKIDY 155 (1342)
Q Consensus 77 ~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~id~ 155 (1342)
.+++.+++++|.+++++++ ||++|+..++.+++++||+|++....|++..... ..+...|+ .+..++.+ |+
T Consensus 86 ~le~~lA~l~g~~~~i~~s-sGt~Ai~~al~~l~~~Gd~Vi~~~~~y~~~~~~~~~~l~~~G~--~v~~v~~~-----d~ 157 (415)
T 2fq6_A 86 SLQQAMCELEGGAGCVLFP-CGAAAVANSILAFIEQGDHVLMTNTAYEPSQDFCSKILSKLGV--TTSWFDPL-----IG 157 (415)
T ss_dssp HHHHHHHHHHTCSEEEEES-SHHHHHHHHHHTTCCTTCEEEEETTSCHHHHHHHHHTGGGGTC--EEEEECTT-----CG
T ss_pred HHHHHHHHHhCCCeEEEeC-CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCc--EEEEECCC-----CH
Confidence 3444899999988777776 9999999999999999999999887776554433 22345566 44444544 78
Q ss_pred HHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHH--cCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 156 KKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKN--INSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 156 e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~--~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
+++++++++ ++++|++..++|+ ...|+++|+++|++ +|+++|+|++|+.+... .++. .+|++++|+||+
T Consensus 158 ~~le~ai~~-~tklV~~e~~~NptG~v~dl~~I~~la~~~~~g~~livD~a~a~~~~~-----~p~~~g~Div~~S~sK~ 231 (415)
T 2fq6_A 158 ADIVKHLQP-NTKIVFLESPGSITMEVHDVPAIVAAVRSVVPDAIIMIDNTWAAGVLF-----KALDFGIDVSIQAATKY 231 (415)
T ss_dssp GGGGGGCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHCTTCEEEEECTTTTTTSS-----CGGGGTCSEEEEETTTT
T ss_pred HHHHHhhcc-CCcEEEEECCCCCCCEeecHHHHHHHHHhhcCCCEEEEECCCcccccC-----CccccCCeEEEEeCccc
Confidence 889888875 3567776666665 55599999999999 99999999999865321 1222 379999999999
Q ss_pred CCCCC---eeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-cEE
Q psy13354 231 LRGPR---GGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-IRI 306 (1342)
Q Consensus 231 l~gp~---GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~~~ 306 (1342)
++++. ||++++++++++.+...... .++...+..+++.....+ .+....++..+++..+.+.|.+.. +..
T Consensus 232 lg~~g~~~~G~l~~~~~~~~~l~~~~~~--~G~~~~~~~a~~~~~~l~----~l~~r~~~~~~n~~~l~~~L~~~~~v~~ 305 (415)
T 2fq6_A 232 LVGHSDAMIGTAVCNARCWEQLRENAYL--MGQMVDADTAYITSRGLR----TLGVRLRQHHESSLKVAEWLAEHPQVAR 305 (415)
T ss_dssp TTCSSSCCCEEEEECTTTHHHHHHHHHH--TTCCCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHTCTTEEE
T ss_pred cCCCCCceEEEEEeCHHHHHHHHHHHHh--cCCCCCHHHHHHHHhhhh----HHHHHHHHHHHHHHHHHHHHHcCCCeeE
Confidence 95544 59999998887777653221 233333333332222122 344556777888999999998853 332
Q ss_pred e-eCC---------------CCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 307 V-SGG---------------TKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 307 ~-~~~---------------~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
+ .+. ..+.++++.+++.. +.+....+++..+
T Consensus 306 v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~-~~~~~~~~l~~l~ 352 (415)
T 2fq6_A 306 VNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKL-NNEELANYLDNFS 352 (415)
T ss_dssp EECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCC-CHHHHHHHHTTCS
T ss_pred EECCCCCCCccHHHHHhhCCCCceEEEEEECCCC-CHHHHHHHHHhCC
Confidence 2 111 13568888887421 1344566665544
No 222
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}
Probab=99.65 E-value=3.6e-15 Score=180.85 Aligned_cols=319 Identities=12% Similarity=0.025 Sum_probs=171.8
Q ss_pred Cceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHH
Q psy13354 28 NNIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A 101 (1342)
..|.+.++ .+++ +|.+.+++.+.+.. ... +.... ... +...+++++++++++.+ +.+++++||++|
T Consensus 30 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~~-~~~~~--~~~----~~~~~l~~~la~~~~~~~~~v~~~~gg~ea 101 (430)
T 3i4j_A 30 RYLDGSSGALVANIGHGRAEVGERMAAQAAR-LPF-VHGSQ--FSS----DVLEEYAGRLARFVGLPTFRFWAVSGGSEA 101 (430)
T ss_dssp EEEETTHHHHTCTTCBCCHHHHHHHHHHHHH-CCC-CCTTT--CEE----HHHHHHHHHHHHHTTCTTCEEEEESSHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHh-ccc-ccccc--cCC----HHHHHHHHHHHHhCCCCCCEEEEeCcHHHH
Confidence 34555554 3443 67799999888753 221 11111 112 44555666899998764 456666699999
Q ss_pred HHHHHHHcc--------CCCCEEEEeeccCCccchhhHHhhhCCc------------eeEEEEecCCCC---CCCCHHHH
Q psy13354 102 NQAVFFSVL--------NPGDTIMGMSLQEGGHLTHGMMLNMSGK------------WFNSICYGLNKK---EKIDYKKV 158 (1342)
Q Consensus 102 ~~~al~al~--------~pGD~Vlv~~~~~~~~~s~~~~~~~~g~------------~~~~v~~~~~~~---~~id~e~L 158 (1342)
+..+++++. .++|.|++....+.++............ .+..+ +.++. +..|++++
T Consensus 102 ~~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~l 179 (430)
T 3i4j_A 102 TESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKL--PKPDPARNGAEDAEGL 179 (430)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTC-------------------------CGGGSCEE--CCCCTTSCHHHHHTHH
T ss_pred HHHHHHHHHHHHHhcCCCCCcEEEEEeCCcCCCCcccccccCccccccccCCcCCCCCceEc--CCCcccchhhHHHHHH
Confidence 999999886 4478999877665543322111110000 11222 22211 23466889
Q ss_pred HHHHHh---cCCeEEEEcCCCC-C--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCC-C-CCcEEE
Q psy13354 159 EYLAKK---NKPKLIIAGASAY-S--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPV-P-FADFIT 224 (1342)
Q Consensus 159 e~~i~~---~~~~liv~~~s~~-~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l-~-~~Divv 224 (1342)
++.+++ .+++++++.+.+. + ...+ +++|+++|++||++||+||+|..... .+... ... . ..|++
T Consensus 180 e~~l~~~~~~~~~~vi~~p~~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~~~-~g~~~~~~~~~~~~~di~- 257 (430)
T 3i4j_A 180 RALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGR-CGSPLALSRWSGVTPDIA- 257 (430)
T ss_dssp HHHHHHHCGGGEEEEEECSSCCGGGTTCCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTT-TSSSSGGGGTTTCCCSEE-
T ss_pred HHHHHhcCCCCEEEEEEcCcccCcCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCc-ccchhhhhhhcCCCCcEE-
Confidence 988874 4456677655544 3 1223 99999999999999999999863211 11111 111 1 24666
Q ss_pred ecCCccCCCC--CeeEEEEechhHHHHhhc----cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHH
Q psy13354 225 STTHKSLRGP--RGGFILMKKKYKKIINSA----VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298 (1342)
Q Consensus 225 ~S~sK~l~gp--~GG~iv~~~~l~~~l~~~----~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~ 298 (1342)
++||++++. .-|++++++++++.+... .....++ .+...++++.++ .+...+ +++.+++.++.+++++.
T Consensus 258 -t~sK~l~~G~~r~G~~~~~~~i~~~~~~~~~~~~~~~t~~-~~~~~~aaa~aa-l~~~~~--~~~~~~~~~~~~~~~~~ 332 (430)
T 3i4j_A 258 -VLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFMHGFTYA-GHPVSVAAGLSV-LDIVER--EDLTGAAKERGAQLLAG 332 (430)
T ss_dssp -EECGGGTTTSSCCEEEEECHHHHHHHHHTTCBCCCCCTTT-TCHHHHHHHHHH-HHHHHH--TTHHHHHHHHHHHHHHH
T ss_pred -EEcccccCCccccEEEEECHHHHHHHhccCCcccccCCCC-CCHHHHHHHHHH-HHHHHc--ccHHHHHHHHHHHHHHH
Confidence 467999431 129999999999988763 2222222 223344443333 333221 23455566666666666
Q ss_pred HHhC-----CcEEeeCCCCCeEEEEEccCCC---------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccc
Q psy13354 299 LDQR-----GIRIVSGGTKSHIILVDLRNKK---------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364 (1342)
Q Consensus 299 L~~~-----g~~~~~~~~~~~~v~i~~~~~~---------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~ 364 (1342)
|.+. ++.... ..+.++++.+.+.. ...++...++ ++||.+.+...+..+.. .+++|++++
T Consensus 333 l~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~~~~---~~~iRi~~~ 406 (430)
T 3i4j_A 333 LQALQARFPQMMQVR--GTGLLLGVVLGDLATGQAFETPGIASRIGAAAL-KRGLITYPGSGAEPNGR---GDHLLLGPP 406 (430)
T ss_dssp HHHHHHHCTTEEEEE--EETTEEEEEEC------------CHHHHHHHHH-HTTEECC--------------CEEEECCC
T ss_pred HHHHHHhCCCeEEEE--EEEEEEEEEeccccccCCCccHHHHHHHHHHHH-hCCCEEEecccccCCCC---CCEEEEECC
Confidence 6542 233322 23557777765321 1135666666 45999987643332221 457999887
Q ss_pred ccccc
Q psy13354 365 AITTR 369 (1342)
Q Consensus 365 ~~~t~ 369 (1342)
...+.
T Consensus 407 ~~~t~ 411 (430)
T 3i4j_A 407 LSITA 411 (430)
T ss_dssp TTCCH
T ss_pred CCCCH
Confidence 65553
No 223
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}
Probab=99.65 E-value=4.9e-15 Score=179.06 Aligned_cols=306 Identities=14% Similarity=0.069 Sum_probs=181.3
Q ss_pred ceeeeecC--CCC----cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHH
Q psy13354 29 NIELIASE--NYT----SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQ 100 (1342)
Q Consensus 29 ~i~l~a~~--n~l----~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~ 100 (1342)
.+.+.++. +++ +|.+.+++.+.+.. +. .+.... |. . +...++++.+++++|.+ +.+++++||++
T Consensus 44 ~lD~~~~~~~~~lG~~~~p~v~~a~~~~~~~-~~-~~~~~~-~~-~----~~~~~l~~~la~~~~~~~~~~v~~~~gg~e 115 (419)
T 2eo5_A 44 YLDFTSGIGVNNLGWPSHPEVIKIGIEQMQK-LA-HAAAND-FY-N----IPQLELAKKLVTYSPGNFQKKVFFSNSGTE 115 (419)
T ss_dssp EEESSGGGGTTTTCBSCCHHHHHHHHHHHTT-SC-CCSCSC-SC-C----HHHHHHHHHHHHHSSCSSCEEEEEESSHHH
T ss_pred EEEccCChhhhccCCCCCHHHHHHHHHHHhh-Cc-cccccc-cC-C----HHHHHHHHHHHHhCCCCcCCEEEEeCchHH
Confidence 45565554 344 67899999888742 21 111111 11 1 33444566899999874 46666669999
Q ss_pred HHHHHHHHccC-CCCEEEEeeccCCccchhhHHh------hh-----CCceeEEEEecCCCCCC----------------
Q psy13354 101 ANQAVFFSVLN-PGDTIMGMSLQEGGHLTHGMML------NM-----SGKWFNSICYGLNKKEK---------------- 152 (1342)
Q Consensus 101 A~~~al~al~~-pGD~Vlv~~~~~~~~~s~~~~~------~~-----~g~~~~~v~~~~~~~~~---------------- 152 (1342)
|+..++.++.. +||+|+++...+++........ .. ...++..+ +.++++.
T Consensus 116 a~~~ai~~~~~~~~~~vi~~~p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v--~~~~~~~~~~g~~~~~~~~~~~~ 193 (419)
T 2eo5_A 116 AIEASIKVVKNTGRKYIIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHV--PYPNPYRNPWHINGYENPSELVN 193 (419)
T ss_dssp HHHHHHHHHHTTSCCEEEEETTCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEE--CCCCSSSCTTCCCTTTCHHHHHH
T ss_pred HHHHHHHHHHHhhCCcEEEECCCcCCCCHhhHhhcCCccccccccCCCCCCCEEE--CCCccccccccccccccchhhHH
Confidence 99999987643 4999998876665433222111 00 11223344 4443332
Q ss_pred CCHHHHH-HHHHh----cCCeEEEEcCCCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-C
Q psy13354 153 IDYKKVE-YLAKK----NKPKLIIAGASAYS-Q-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-F 219 (1342)
Q Consensus 153 id~e~Le-~~i~~----~~~~liv~~~s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~ 219 (1342)
+|+++++ +.+++ .+.+++++++.+++ + ..+ +++|+++|++||++||+||+|. +|..+......... .
T Consensus 194 ~~~~~l~~~~i~~~~~~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~ 273 (419)
T 2eo5_A 194 RVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTV 273 (419)
T ss_dssp HHHHHHHHTHHHHTCCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCC
T ss_pred HHHHHHHHHHHhhccCCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCC
Confidence 3688999 88874 34466666554443 3 344 9999999999999999999997 33221100001111 2
Q ss_pred CcEEEecCCccCCCC-Ce-eEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q psy13354 220 ADFITSTTHKSLRGP-RG-GFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 220 ~Divv~S~sK~l~gp-~G-G~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~ 297 (1342)
.|++ |+||+++++ .+ ||++++++++ .+ .......++ .+.+.++++.+++. ... +..+++.++++++.+
T Consensus 274 ~d~~--t~sK~~~~G~~riG~~~~~~~~~-~~-~~~~~~t~~-~n~~~~~aa~aal~-~~~----~~~~~~~~~~~~l~~ 343 (419)
T 2eo5_A 274 PDVI--TLAKALGGGIMPIGATIFRKDLD-FK-PGMHSNTFG-GNALACAIGSKVID-IVK----DLLPHVNEIGKIFAE 343 (419)
T ss_dssp CSEE--EECGGGGTTTSCCEEEEEEGGGC-CC-------CCC-CCHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHH
T ss_pred CCEE--EecccccCCccceEEEEEchHhh-cC-CcccCCCCC-CCHHHHHHHHHHHH-HHH----HHHHHHHHHHHHHHH
Confidence 4665 677999542 33 9999999876 55 212222222 23444444444443 322 267888999999999
Q ss_pred HHHhCCcEEeeCCCCCeEEEEEccCC-CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 298 ILDQRGIRIVSGGTKSHIILVDLRNK-KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 298 ~L~~~g~~~~~~~~~~~~v~i~~~~~-~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.|.+. +.... ..++++++.+.+. ..+. +...++ ++||.+.+.. .+++|++++..++.
T Consensus 344 ~L~~~-~~~~~--~~g~~~~i~~~~~~~~~~-~~~~l~-~~Gv~v~~~~----------~~~lRis~~~~~t~ 401 (419)
T 2eo5_A 344 ELQGL-ADDVR--GIGLAWGLEYNEKKVRDR-IIGESF-KRGLLLLPAG----------RSAIRVIPPLVISE 401 (419)
T ss_dssp HHTTS-SSEEE--EETTEEEEECSCHHHHHH-HHHHHH-HTTEECEEET----------TTEEEECCCTTCCH
T ss_pred HHHHh-hhheE--eeeEEEEEEEecCccHHH-HHHHHH-HCCCEEecCC----------CCEEEEECCCCCCH
Confidence 99876 32222 2356778887421 1233 555665 5699998752 24699987765553
No 224
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.65 E-value=7.6e-15 Score=188.64 Aligned_cols=221 Identities=14% Similarity=0.116 Sum_probs=150.5
Q ss_pred HHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCC-C----C
Q psy13354 77 IAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK-K----E 151 (1342)
Q Consensus 77 ~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~-~----~ 151 (1342)
.+++.+++++|.+.++++++|++.|+.+++.++++|||+|++... +|.+....+...|.. ++.++.+. + +
T Consensus 209 ~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al~~~GD~Vlv~~~---~h~s~~~~~~~~G~~--~v~v~~~~~~~g~~g 283 (755)
T 2vyc_A 209 ESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVVVDRN---CHKSIEQGLMLTGAK--PVYMVPSRNRYGIIG 283 (755)
T ss_dssp HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHCCTTCEEEEESS---CCHHHHHHHHHHCCE--EEEECCCBCTTSCBC
T ss_pred HHHHHHHHHhCCCceEEECCcHHHHHHHHHHHhcCCCCEEEECCC---chHHHHHHHHHcCCE--EEEEeCCCCcccccc
Confidence 355689999999987777745567999999999999999997764 455554445666774 44444432 2 3
Q ss_pred CC-----CHHHHHHHHHhc-C--------CeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCC--CC
Q psy13354 152 KI-----DYKKVEYLAKKN-K--------PKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE--YP 214 (1342)
Q Consensus 152 ~i-----d~e~Le~~i~~~-~--------~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~--~~ 214 (1342)
.+ |++++++++++. . +++++++++++. ...++++|+++|++||++|++|+||+.+...... ..
T Consensus 284 ~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~pn~~G~v~dl~~I~~ia~~~~~~livDeA~~~~~~~~~~~~~~ 363 (755)
T 2vyc_A 284 PIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYDGVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADH 363 (755)
T ss_dssp CCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESSCTTSEEECHHHHHHHHTTTCSEEEEECTTCTTGGGCGGGTTS
T ss_pred ccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECCCCCceecCHHHHHHHHHHcCCEEEEECcCchhcccCcccCCc
Confidence 35 999999999763 1 236666566654 4459999999999999999999999754322211 01
Q ss_pred CCCCC--CcE------EEecCCccCCCCCe-eEEEEech--hH--HHHhhccCCccccCCcHHHHHHHHHHHHHhccchH
Q psy13354 215 NPVPF--ADF------ITSTTHKSLRGPRG-GFILMKKK--YK--KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDF 281 (1342)
Q Consensus 215 ~~l~~--~Di------vv~S~sK~l~gp~G-G~iv~~~~--l~--~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~ 281 (1342)
.++.. +|+ +++|+||+++|+.+ |+++++++ .. ..+......+..++++.+..+++.++.......+.
T Consensus 364 ~~~~g~~aD~~~~~~iv~~S~hK~L~g~~~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp~~~~iaal~aA~~~l~~~gg 443 (755)
T 2vyc_A 364 YAMRGEPGDHNGPTVFATHSTHKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSG 443 (755)
T ss_dssp SSSCSCCCCCSSBEEEEEEETTTSSSCCTTCEEEEEECCBTCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSTHHH
T ss_pred chhcCCcCCccCCCeEEEECccccccCcCCeeeeeecCcccccCHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhhH
Confidence 12122 354 89999999988774 88877765 22 23332212223456667777777766665544335
Q ss_pred HHHHHHHHHHHHHHHHHHHhC
Q psy13354 282 KIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 282 ~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
.+..++..++++++++.|.+.
T Consensus 444 ~~~~~~~~~~a~~~r~~L~~l 464 (755)
T 2vyc_A 444 LSLTQEVIDEAVDFRQAMARL 464 (755)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 677888899999999998774
No 225
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*
Probab=99.65 E-value=4.3e-15 Score=179.70 Aligned_cols=299 Identities=13% Similarity=0.070 Sum_probs=178.5
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-C-CCCceEecCCHHHHHHHHHH---HccCCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-N-AEAANVQPHSGSQANQAVFF---SVLNPG 113 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g-~~~~vi~~~sGs~A~~~al~---al~~pG 113 (1342)
.+|.+.+++.+.+. .+. .... .+.......++++ .+++++ | .++.+++++||++|+..++. ++.++|
T Consensus 58 ~~~~v~~a~~~~~~-~~~--~~~~-~~~~~~~~~~l~~----~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~~~~~ 129 (426)
T 1sff_A 58 LHPKVVAAVEAQLK-KLS--HTCF-QVLAYEPYLELCE----IMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATKRS 129 (426)
T ss_dssp TCHHHHHHHHHHTT-TCS--CCCT-TTEECHHHHHHHH----HHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHH-hCC--Cccc-cccCCHHHHHHHH----HHHHhCCcccccEEEEeCchHHHHHHHHHHHHHhhCCC
Confidence 46779999888874 221 1111 1223344444444 788888 5 32456666699999999988 667776
Q ss_pred CEEEEeeccCCccchhhHHhhhCCc-------------eeEEEEecCC---CCCCCCHHHHHHHHHh----cCCeEEEEc
Q psy13354 114 DTIMGMSLQEGGHLTHGMMLNMSGK-------------WFNSICYGLN---KKEKIDYKKVEYLAKK----NKPKLIIAG 173 (1342)
Q Consensus 114 D~Vlv~~~~~~~~~s~~~~~~~~g~-------------~~~~v~~~~~---~~~~id~e~Le~~i~~----~~~~liv~~ 173 (1342)
+|++.+..+++....+ ....|. ++..++++.+ .++.+|++++++.+++ .++++|++.
T Consensus 130 -~vi~~~p~y~~~~~~~--~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~ 206 (426)
T 1sff_A 130 -GTIAFSGAYHGRTHYT--LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIE 206 (426)
T ss_dssp -EEEEETTCCCCSSHHH--HHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEEC
T ss_pred -eEEEECCCcCCCchHh--hhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEe
Confidence 7887766655443221 112221 1334444321 1345789999998874 345667664
Q ss_pred C-CCCCc-ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCCCe---eEEEE
Q psy13354 174 A-SAYSQ-YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGPRG---GFILM 241 (1342)
Q Consensus 174 ~-s~~~~-~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp~G---G~iv~ 241 (1342)
+ +++++ ..+ +++|.++|++||++||+||+|+ ++...+... ...+ .+|++ |+||++ ++ | ||+++
T Consensus 207 p~~~ntG~~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~di~--s~sK~~-~~-GlriG~~~~ 281 (426)
T 1sff_A 207 PVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQS-GAGRTGTLFAMEQMGVAPDLT--TFAKSI-AG-GFPLAGVTG 281 (426)
T ss_dssp SBCTTTTSCBCCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSGGGGTTSCCSEE--EECGGG-GT-SSCCEEEEE
T ss_pred cccCCCCcccCCHHHHHHHHHHHHHcCCEEEEechhh-ccCcccchhhhhhcCCCCCEE--EEcccc-cC-CCceEEEEE
Confidence 4 23344 556 9999999999999999999998 332222211 1111 24655 778999 55 6 99999
Q ss_pred echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC--c---EEeeCCCCCeEE
Q psy13354 242 KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG--I---RIVSGGTKSHII 316 (1342)
Q Consensus 242 ~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g--~---~~~~~~~~~~~v 316 (1342)
++++++.+........++ .+...++++.+++..... ..+.+++.++++++.+.|.+.+ + .... + .++++
T Consensus 282 ~~~~~~~l~~~~~~~~~~-~~~~~~~a~~aal~~~~~---~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~-~-~g~~~ 355 (426)
T 1sff_A 282 RAEVMDAVAPGGLGGTYA-GNPIACVAALEVLKVFEQ---ENLLQKANDLGQKLKDGLLAIAEKHPEIGDVR-G-LGAMI 355 (426)
T ss_dssp EHHHHTTSCTTSBCCSSS-SCHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHTCTTEEEEE-E-ETTEE
T ss_pred cHHHHhhhccCCcCcCCC-CCHHHHHHHHHHHHHHHh---cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE-E-EEEEE
Confidence 998877665422222222 234444444444433222 1356778888888888887632 2 2212 2 36788
Q ss_pred EEEccCC--------CCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 317 LVDLRNK--------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 317 ~i~~~~~--------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
|+.+... ....++...+++ +||.+.++..+ .+++|++++..++
T Consensus 356 ~~~~~~~~~~~~~~~~~~~~l~~~l~~-~gi~v~~~~~~--------~~~iRi~~~~~~~ 406 (426)
T 1sff_A 356 AIELFEDGDHNKPDAKLTAEIVARARD-KGLILLSCGPY--------YNVLRILVPLTIE 406 (426)
T ss_dssp EEEEBGGGCTTSBCHHHHHHHHHHHHH-TTEECEEESTT--------SCEEEECCCTTCC
T ss_pred EEEEecCccccCCChHHHHHHHHHHHH-CCcEEecCCCC--------CCEEEEECCccCC
Confidence 9888531 123355566655 59999876431 3569999875544
No 226
>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A
Probab=99.64 E-value=2.7e-15 Score=180.20 Aligned_cols=294 Identities=13% Similarity=0.074 Sum_probs=181.2
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-------C
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN-------P 112 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~-------p 112 (1342)
+|.+.+++.+.+.. +. ... ..+ .. +...++++++++++|.+.+++++ ||++|+..++.++.. +
T Consensus 57 ~p~v~~a~~~~~~~-~~-~~~--~~~-~~----~~~~~l~~~la~~~~~~~v~~~~-gg~~a~~~al~~~~~~~~~~~~~ 126 (406)
T 4adb_A 57 HPELREALNEQASK-FW-HTG--NGY-TN----EPVLRLAKKLIDATFADRVFFCN-SGAEANEAALKLARKFAHDRYGS 126 (406)
T ss_dssp CHHHHHHHHHHHTT-CS-CCC--TTS-CC----HHHHHHHHHHHHHSSCSEEEEES-SHHHHHHHHHHHHHHHHHHHTCT
T ss_pred CHHHHHHHHHHHHh-cc-ccc--CCc-CC----HHHHHHHHHHHhhCCCCeEEEeC-cHHHHHHHHHHHHHHHHHhcCCC
Confidence 67799998888753 21 111 112 22 23444566999999988555555 999999999998864 6
Q ss_pred C-CEEEEeeccCCccchhhHHhhhC--------CceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-----
Q psy13354 113 G-DTIMGMSLQEGGHLTHGMMLNMS--------GKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS----- 178 (1342)
Q Consensus 113 G-D~Vlv~~~~~~~~~s~~~~~~~~--------g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~----- 178 (1342)
| |+|++.+..++++.......... ........++.+ |++++++.+++ ++++++++ |++|
T Consensus 127 g~~~vi~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~l~~~l~~-~~~~v~~~-p~np~g~~~ 199 (406)
T 4adb_A 127 HKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYN-----DINSASALIDD-STCAVIVE-PIQGEGGVV 199 (406)
T ss_dssp TCCEEEEETTCCCCSSHHHHHHSSCGGGTGGGCSCCSSEEEECTT-----CHHHHHTTCST-TEEEEEEC-SEETTTTSE
T ss_pred CCcEEEEECCCcCCCcHHHhhccCCccccccCCCCCCCceEeCCC-----cHHHHHHHhcC-CeEEEEEe-CCcCCCCCc
Confidence 6 89998777666553322211110 000123333333 89999988863 56778877 4555
Q ss_pred --cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhhc
Q psy13354 179 --QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINSA 252 (1342)
Q Consensus 179 --~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~ 252 (1342)
...++++|+++|++||++||+||+|+ +....+.... ..+ ..|++ ++||+++++ .+|++++++++++.+...
T Consensus 200 ~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~--t~sK~~~~G~r~G~~~~~~~~~~~~~~~ 276 (406)
T 4adb_A 200 PASNAFLQGLRELCNRHNALLIFDEVQT-GVGRTGELYAYMHYGVTPDLL--TTAKALGGGFPVGALLATEECARVMTVG 276 (406)
T ss_dssp ECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECHHHHHTCCTT
T ss_pred cCCHHHHHHHHHHHHHcCCEEEEecccc-CCCccchhHHHHhcCCCCCEE--EechhhcCCCCeEEEEEcHHHHhhhccC
Confidence 22379999999999999999999996 3221121110 011 24766 568999422 249999999988887664
Q ss_pred cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCCc--EEee-CCCCCeEEEEEccCCC--CCH
Q psy13354 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI--RIVS-GGTKSHIILVDLRNKK--ITG 327 (1342)
Q Consensus 253 ~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g~--~~~~-~~~~~~~v~i~~~~~~--~~~ 327 (1342)
.....++ .+...++++..++ +... . ++..+++.++++++.+.|.+.+. .... ....+.++++.++... ...
T Consensus 277 ~~~~~~~-~~~~~~~a~~~~l-~~~~-~-~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 352 (406)
T 4adb_A 277 THGTTYG-GNPLASAVAGKVL-ELIN-T-PEMLNGVKQRHDWFVERLNTINHRYGLFSEVRGLGLLIGCVLNADYAGQAK 352 (406)
T ss_dssp SSCCSST-TCHHHHHHHHHHH-HHHS-S-HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECTTTTTCHH
T ss_pred CcCCCCC-CCHHHHHHHHHHH-HHHH-h-cCHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEEEEEEEeCCcHHHHH
Confidence 4333333 3344444444444 3333 2 56778889999999998887421 1111 1123567888876532 344
Q ss_pred HHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 328 KIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 328 ~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++...++++ ||.+.+.. .+++|++++..++
T Consensus 353 ~~~~~l~~~-gi~v~~~~----------~~~iRi~~~~~~~ 382 (406)
T 4adb_A 353 QISQEAAKA-GVMVLIAG----------GNVVRFAPALNVS 382 (406)
T ss_dssp HHHHHHHHT-TEECEESS----------TTEEEECCCTTCC
T ss_pred HHHHHHHHC-CcEEeecC----------CCeEEEECCCCCC
Confidence 566666655 99998631 3569998776554
No 227
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.64 E-value=3.1e-15 Score=172.05 Aligned_cols=212 Identities=22% Similarity=0.235 Sum_probs=158.4
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCc
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGI 448 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~ 448 (1342)
.+..++.|..|++++|++.+++.|.+.+.. +..++++||+||||||||++|+++++.+.+
T Consensus 10 ~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~--------- 80 (297)
T 3b9p_A 10 EIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSA--------- 80 (297)
T ss_dssp TTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTC---------
T ss_pred HhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCC---------
Confidence 456788999999999999999999888743 234678999999999999999999998863
Q ss_pred ccCCCCCCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC----------
Q psy13354 449 TSQPCGKCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------- 512 (1342)
Q Consensus 449 ~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------- 512 (1342)
.++.++++.. .....++.++..+.. ..+.+|+|||++.+.
T Consensus 81 --------------------~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~ 136 (297)
T 3b9p_A 81 --------------------TFLNISAASLTSKYVGDGEKLVRALFAVARH----MQPSIIFIDEVDSLLSERSSSEHEA 136 (297)
T ss_dssp --------------------EEEEEESTTTSSSSCSCHHHHHHHHHHHHHH----TCSEEEEEETGGGTSBCC-----CC
T ss_pred --------------------CeEEeeHHHHhhcccchHHHHHHHHHHHHHH----cCCcEEEeccHHHhccccccCcchH
Confidence 2333333211 112345555554432 345799999999872
Q ss_pred -HHHHHHHHHhhcCCC-----CcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHH
Q psy13354 513 -HHAFNAMLKTLEEPP-----KYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585 (1342)
Q Consensus 513 -~~~~~~Ll~~Le~p~-----~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~ 585 (1342)
....+.|+..++..+ ..+++|++||.++.+.+++.+|+ ..+.++.|+.++...++..++++.+..+++++++.
T Consensus 137 ~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~ 216 (297)
T 3b9p_A 137 SRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRR 216 (297)
T ss_dssp SHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 345667888877654 35788889999999999999999 78999999999999999999999888899999999
Q ss_pred HHHhcCCcHH-HHHHHHHHHHhhc----------------CCCCCHHHHHHHhccC
Q psy13354 586 IATGAQGSMR-DALSLTDQAINYS----------------SEKITLNSMQEMLSII 624 (1342)
Q Consensus 586 La~~~~g~lr-~a~~~L~kl~~~~----------------~~~It~e~V~~~v~~~ 624 (1342)
+++.+.|..+ ++.++++.+...+ ...|+.+|+..++...
T Consensus 217 la~~~~g~~~~~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~ 272 (297)
T 3b9p_A 217 LAKITDGYSGSDLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRI 272 (297)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSC
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHc
Confidence 9999988776 4445555543221 1247777777766543
No 228
>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B
Probab=99.64 E-value=6e-15 Score=177.20 Aligned_cols=247 Identities=16% Similarity=0.133 Sum_probs=163.4
Q ss_pred chHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEecC
Q psy13354 69 KFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICYGL 147 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~~~ 147 (1342)
+...++++ .+++++|.+++++++ +|++|+..++. ++++||+|+++...|++...... .+...|. +++.++.
T Consensus 67 p~~~~l~~----~la~~~g~~~~i~~~-sG~~ai~~~~~-l~~~gd~Vl~~~~~y~~~~~~~~~~~~~~G~--~v~~v~~ 138 (403)
T 3cog_A 67 PTRNCLEK----AVAALDGAKYCLAFA-SGLAATVTITH-LLKAGDQIICMDDVYGGTNRYFRQVASEFGL--KISFVDC 138 (403)
T ss_dssp HHHHHHHH----HHHHHHTCSEEEEES-CHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTGGGGTC--EEEEECT
T ss_pred chHHHHHH----HHHHHhCCCcEEEEC-CHHHHHHHHHH-HhCCCCEEEEeCCCcchHHHHHHHHHHHcCC--EEEEECC
Confidence 44445555 888899988777777 89999999999 89999999988877765433222 2345566 5555565
Q ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcC-CEEEEEcccchhhhhcCCCCCCCC-CCcEE
Q psy13354 148 NKKEKIDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNIN-SYFMVDMAHYAGLIAAGEYPNPVP-FADFI 223 (1342)
Q Consensus 148 ~~~~~id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~g-i~LIvDea~~~g~~~~~~~~~~l~-~~Div 223 (1342)
+ |++++++.+++ ++++|+++++++| ...++++|+++|+++| ++||+|++|+.+... .+++ .+|++
T Consensus 139 ~-----d~~~l~~~i~~-~t~~v~~~~p~nptG~~~~l~~i~~la~~~g~~~livD~~~~~~~~~-----~~~~~~~div 207 (403)
T 3cog_A 139 S-----KIKLLEAAITP-ETKLVWIETPTNPTQKVIDIEGCAHIVHKHGDIILVVDNTFMSPYFQ-----RPLALGADIS 207 (403)
T ss_dssp T-----SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHTSSSCCEEEEECTTTCTTTC-----CTTTTTCSEE
T ss_pred C-----CHHHHHHhcCc-CCeEEEEECCCCCCCeeeCHHHHHHHHHHcCCCEEEEECCCcccccC-----CccccCCeEE
Confidence 4 89999998875 4567766666666 4459999999999999 999999999876532 1222 37999
Q ss_pred EecCCccCCCCCe---eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHH
Q psy13354 224 TSTTHKSLRGPRG---GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299 (1342)
Q Consensus 224 v~S~sK~l~gp~G---G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L 299 (1342)
++|+||+++|+.| |+++++ +++++.+......+. ...++..+++..... . .+....++..+++..+.+.+
T Consensus 208 ~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g--~~~~~~~~~~~~~~l---~-~l~~r~~~~~~n~~~l~~~l 281 (403)
T 3cog_A 208 MYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLG--AVPSPIDCYLCNRGL---K-TLHVRMEKHFKNGMAVAQFL 281 (403)
T ss_dssp EEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHC--CCCCHHHHHHHHHHH---T-THHHHHHHHHHHHHHHHHHH
T ss_pred EEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcC--CCCCHHHHHHHHhhh---h-HHHHHHHHHHHHHHHHHHHH
Confidence 9999999976654 999985 677777765433222 222333332222222 2 33445666777887787877
Q ss_pred HhCC---------------cEEeeC--CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeee
Q psy13354 300 DQRG---------------IRIVSG--GTKSHIILVDLRNKKITGKIAESILESANIICNK 343 (1342)
Q Consensus 300 ~~~g---------------~~~~~~--~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~ 343 (1342)
++.. +.+..+ ...+.++.+.+++. .+....++++.||.+..
T Consensus 282 ~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~---~~~~~~~l~~~~i~~~~ 339 (403)
T 3cog_A 282 ESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT---LQHAEIFLKNLKLFTLA 339 (403)
T ss_dssp HTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC---HHHHHHHHHHCSSSEEC
T ss_pred hcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC---HHHHHHHHHhCCcceEc
Confidence 6642 111110 01245566666542 35667778888987653
No 229
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.63 E-value=2.3e-15 Score=179.93 Aligned_cols=193 Identities=20% Similarity=0.229 Sum_probs=147.8
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGG 447 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~ 447 (1342)
..|..+++|..|++++|++.+++.|...+.. +..++++||+||+|||||++|+++++.+++
T Consensus 103 ~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~-------- 174 (389)
T 3vfd_A 103 NEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNA-------- 174 (389)
T ss_dssp GTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------
T ss_pred hhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcC--------
Confidence 3567889999999999999999999888732 234578999999999999999999998763
Q ss_pred cccCCCCCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC---------
Q psy13354 448 ITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------- 512 (1342)
Q Consensus 448 ~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------- 512 (1342)
.++.++++... ....++.++..+... .+.||+|||+|.+.
T Consensus 175 ---------------------~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~----~~~il~iDEid~l~~~~~~~~~~ 229 (389)
T 3vfd_A 175 ---------------------TFFNISAASLTSKYVGEGEKLVRALFAVAREL----QPSIIFIDQVDSLLCERREGEHD 229 (389)
T ss_dssp ---------------------EEEEECSCCC-------CHHHHHHHHHHHHHS----SSEEEEEETGGGGC--------C
T ss_pred ---------------------cEEEeeHHHhhccccchHHHHHHHHHHHHHhc----CCeEEEEECchhhcccCCCccch
Confidence 34555543321 123455555555432 34699999999882
Q ss_pred --HHHHHHHHHhhc----CCCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHH
Q psy13354 513 --HHAFNAMLKTLE----EPPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585 (1342)
Q Consensus 513 --~~~~~~Ll~~Le----~p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~ 585 (1342)
...++.|+..++ .++..+++|.+||.++.+.+++.+|| ..+.+..++.++...++..++...+..++++.++.
T Consensus 230 ~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~ 309 (389)
T 3vfd_A 230 ASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQ 309 (389)
T ss_dssp THHHHHHHHHHHHHHHC-----CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHH
T ss_pred HHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHH
Confidence 334566776665 23567889999999999999999999 68999999999999999999999999999999999
Q ss_pred HHHhcCCcHHHHH-HHHHHH
Q psy13354 586 IATGAQGSMRDAL-SLTDQA 604 (1342)
Q Consensus 586 La~~~~g~lr~a~-~~L~kl 604 (1342)
|++.+.|..+..+ .++..+
T Consensus 310 la~~~~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 310 LARMTDGYSGSDLTALAKDA 329 (389)
T ss_dssp HHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHH
Confidence 9999998766444 444443
No 230
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.63 E-value=4.2e-15 Score=175.31 Aligned_cols=194 Identities=18% Similarity=0.212 Sum_probs=151.5
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCC
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGG 447 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~ 447 (1342)
..+..++.|..|++++|++.+++.|.+.+.. +..++.+||+||+|||||++|+++++.+++
T Consensus 72 ~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~-------- 143 (357)
T 3d8b_A 72 NEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGA-------- 143 (357)
T ss_dssp HHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTC--------
T ss_pred hhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCC--------
Confidence 3467789999999999999999999988752 355678999999999999999999998863
Q ss_pred cccCCCCCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC---------
Q psy13354 448 ITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------- 512 (1342)
Q Consensus 448 ~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------- 512 (1342)
.++.++++... ....++.++..+.. ..+.+|+|||+|.+.
T Consensus 144 ---------------------~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~----~~~~vl~iDEid~l~~~~~~~~~~ 198 (357)
T 3d8b_A 144 ---------------------TFFSISASSLTSKWVGEGEKMVRALFAVARC----QQPAVIFIDEIDSLLSQRGDGEHE 198 (357)
T ss_dssp ---------------------EEEEEEGGGGCCSSTTHHHHHHHHHHHHHHH----TCSEEEEEETHHHHTBC------C
T ss_pred ---------------------eEEEEehHHhhccccchHHHHHHHHHHHHHh----cCCeEEEEeCchhhhccCCCCcch
Confidence 24444443211 12234455544432 345799999999772
Q ss_pred --HHHHHHHHHhhcC----CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHH
Q psy13354 513 --HHAFNAMLKTLEE----PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585 (1342)
Q Consensus 513 --~~~~~~Ll~~Le~----p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~ 585 (1342)
...++.|+..++. ++..+++|++||.++.+.+++++|+ ..+.+..|+.++...++...++..+..+++++++.
T Consensus 199 ~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~ 278 (357)
T 3d8b_A 199 SSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQ 278 (357)
T ss_dssp HHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHH
Confidence 1345677777764 3467888999999999999999999 58899999999999999999999999999999999
Q ss_pred HHHhcCC-cHHHHHHHHHHHH
Q psy13354 586 IATGAQG-SMRDALSLTDQAI 605 (1342)
Q Consensus 586 La~~~~g-~lr~a~~~L~kl~ 605 (1342)
|++.+.| +.+++..+++.+.
T Consensus 279 la~~t~G~s~~dl~~l~~~a~ 299 (357)
T 3d8b_A 279 IVQQSDAFSGADMTQLCREAS 299 (357)
T ss_dssp HHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCHHHHHHHHHHHH
Confidence 9999988 6667777766654
No 231
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*
Probab=99.63 E-value=7.6e-15 Score=179.26 Aligned_cols=312 Identities=13% Similarity=0.003 Sum_probs=183.8
Q ss_pred Cceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHH
Q psy13354 28 NNIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQA 101 (1342)
Q Consensus 28 ~~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A 101 (1342)
+.|.+.++ .+++ +|.+.+|+.+.+.. .... . ...+ .. +...+++++++++++.. +.+++++||++|
T Consensus 76 ~ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~-~~~~-~-~~~~-~~----~~~~~L~e~la~~~~~~~~~v~~~~sGseA 147 (457)
T 3tfu_A 76 EVLDAMSSWWTAIHGHGHPALDQALTTQLRV-MNHV-M-FGGL-TH----EPAARLAKLLVDITPAGLDTVFFSDSGSVS 147 (457)
T ss_dssp EEEETTHHHHTCTTCBTCHHHHHHHHHHHHH-CSCC-C-SSSE-EC----HHHHHHHHHHHHHSSTTEEEEEEESSHHHH
T ss_pred EEEECCCcHhhhccCCCCHHHHHHHHHHHHh-ccCc-c-cccc-CC----HHHHHHHHHHHHhCCCCcCEEEEeCcHHHH
Confidence 44555554 2343 67799999888853 2111 1 0111 12 33445666899998654 455666699999
Q ss_pred HHHHHHHccC-------CCC-EEEEeeccCCccchhhHHh-----------hhCCceeEEEEecCCCCCCCCHHHHHHHH
Q psy13354 102 NQAVFFSVLN-------PGD-TIMGMSLQEGGHLTHGMML-----------NMSGKWFNSICYGLNKKEKIDYKKVEYLA 162 (1342)
Q Consensus 102 ~~~al~al~~-------pGD-~Vlv~~~~~~~~~s~~~~~-----------~~~g~~~~~v~~~~~~~~~id~e~Le~~i 162 (1342)
+..+++++.. +|+ .|++....+.++......+ .....++..++++.+.....|++++++++
T Consensus 148 ~~~Alk~a~~~~~~~g~~g~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l 227 (457)
T 3tfu_A 148 VEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQL 227 (457)
T ss_dssp HHHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCceEEEEcCCcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHH
Confidence 9999998864 565 7777665554432221111 00111234444443322224789999988
Q ss_pred Hh--cCCeEEEEcC-CCCC-c-c----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCcc
Q psy13354 163 KK--NKPKLIIAGA-SAYS-Q-Y----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKS 230 (1342)
Q Consensus 163 ~~--~~~~liv~~~-s~~~-~-~----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~ 230 (1342)
++ .++++|++.+ .+++ + . ..+++|.++|++||++||+||+|.. +...+.... ... ..|++ ++||+
T Consensus 228 ~~~~~~~aavi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~gillI~DEv~~g-~gr~G~~~a~~~~~~~pdii--t~sK~ 304 (457)
T 3tfu_A 228 AQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATG-FGRTGALFAADHAGVSPDIM--CVGKA 304 (457)
T ss_dssp HHHGGGEEEEEECSSEECTTTCEECCTHHHHHHHHHHHHHTCEEEEECTTTT-TTTTSSSSTHHHHTCCCSEE--EECGG
T ss_pred HhCCCCEEEEEEeCCCcCCCCcccCCHHHHHHHHHHHHHcCCEEEEEcCccC-CccccchhHhHhcCCCceEE--EEChh
Confidence 74 3456677755 3333 1 2 2499999999999999999999862 111121111 011 25777 66799
Q ss_pred CCCC--CeeEEEEechhHHHHhhc-----cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC-
Q psy13354 231 LRGP--RGGFILMKKKYKKIINSA-----VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR- 302 (1342)
Q Consensus 231 l~gp--~GG~iv~~~~l~~~l~~~-----~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~- 302 (1342)
++|. +.|++++++++++.+... .....++ .++..++++.+.++.+.+ +.+.+++.++.+++.+.|.+.
T Consensus 305 l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~~~t~~--~n~~a~aaa~aaL~~~~~--~~~~~~~~~~~~~l~~~L~~l~ 380 (457)
T 3tfu_A 305 LTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFM--ANPLACAVSVASVELLLG--QDWRTRITELAAGLTAGLDTAR 380 (457)
T ss_dssp GGTTSSCCEEEEEEHHHHHHHHHSSSCSCCCCCTTT--TCHHHHHHHHHHHHHHHT--SCHHHHHHHHHHHHHHHHGGGG
T ss_pred hhCCCcceEEEEEcHHHHHHhhccCCCceeEecCCC--cCHHHHHHHHHHHHHHhh--hHHHHHHHHHHHHHHHHHHHHh
Confidence 9663 449999999999988522 1122222 234444444444444321 135677788888888888764
Q ss_pred ---CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 303 ---GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 303 ---g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++.... ..+.++++.++......++...++++ ||++.+. .+.+|++.+...+
T Consensus 381 ~~~~v~~vr--~~G~~~~i~l~~~~~~~~~~~~l~~~-Gv~v~~~-----------~~~lRi~p~~~~t 435 (457)
T 3tfu_A 381 ALPAVTDVR--VCGAIGVIECDRPVDLAVATPAALDR-GVWLRPF-----------RNLVYAMPPYICT 435 (457)
T ss_dssp GSTTEEEEE--ECSSCEEEEESSCCCHHHHHHHHHHT-TEECCCB-----------TTEEEECCCTTCC
T ss_pred cCCCeeeee--cCCeEEEEEECCcccHHHHHHHHHHC-CeEEEec-----------CCEEEEECCCCCC
Confidence 232222 23567788887654445666666665 9999752 2468988766544
No 232
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=7.5e-15 Score=171.48 Aligned_cols=203 Identities=19% Similarity=0.251 Sum_probs=154.8
Q ss_pred CCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+|+.|.+.+++.|++++.- -..+.++|||||||||||++|+++|+++++
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~-------------- 208 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDC-------------- 208 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTC--------------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCC--------------
Confidence 446899999999999999888742 245678999999999999999999999974
Q ss_pred CCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-------------- 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------------- 513 (1342)
.|+.++++... +...+++++..+... .+-||+|||+|.+..
T Consensus 209 ---------------~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~----aP~IIFiDEiDai~~~R~~~~~~~~~~~~ 269 (405)
T 4b4t_J 209 ---------------KFIRVSGAELVQKYIGEGSRMVRELFVMAREH----APSIIFMDEIDSIGSTRVEGSGGGDSEVQ 269 (405)
T ss_dssp ---------------EEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT----CSEEEEEESSSCCTTSCSCSSSGGGGHHH
T ss_pred ---------------CceEEEhHHhhccccchHHHHHHHHHHHHHHh----CCceEeeecchhhccCCCCCCCCCcHHHH
Confidence 46666664321 234577777766543 345999999998731
Q ss_pred HHHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++. ....+++|.+||.++.+++++++ |+ ..+.|+.|+.++..++++.++++..+. ++..++.||+
T Consensus 270 ~~l~~lL~~lDg~~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~ 348 (405)
T 4b4t_J 270 RTMLELLNQLDGFETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAE 348 (405)
T ss_dssp HHHHHHHHHHHTTTCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHH
T ss_pred HHHHHHHHhhhccCCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHH
Confidence 135677777773 45678899999999999999997 77 789999999999999998888765543 2234888999
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.| +-.++.+++..+...+ ...||.+|+..++.
T Consensus 349 ~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~ 387 (405)
T 4b4t_J 349 KMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVG 387 (405)
T ss_dssp HCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHH
Confidence 8865 7777777777766554 23488888877764
No 233
>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3
Probab=99.63 E-value=4.5e-15 Score=177.73 Aligned_cols=206 Identities=17% Similarity=0.130 Sum_probs=142.5
Q ss_pred HHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCCC
Q psy13354 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.+.+++.+++++|.+++++++ +|++|+..++. ++++||+|+++...|++..... ..+...|..+.. ++.+
T Consensus 57 ~~~lr~~la~~~g~~~~i~~~-sGt~a~~~al~-~~~~gd~Vi~~~~~y~~~~~~~~~~~~~~G~~v~~--v~~~----- 127 (393)
T 1n8p_A 57 RENLERAVAALENAQYGLAFS-SGSATTATILQ-SLPQGSHAVSIGDVYGGTHRYFTKVANAHGVETSF--TNDL----- 127 (393)
T ss_dssp HHHHHHHHHHHTTCSEEEEES-CHHHHHHHHHH-TSCSSCEEEEESSCCHHHHHHHHHTSTTTCSCCEE--ESSH-----
T ss_pred HHHHHHHHHHHhCCCcEEEEC-ChHHHHHHHHH-HcCCCCEEEEeCCCchHHHHHHHHHHHHcCcEEEE--eCCC-----
Confidence 334555999999988777777 89999999999 8999999998886665433322 234555664444 4543
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHc----CCEEEEEcccchhhhhcCCCCCCCC-CCcEEEec
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNI----NSYFMVDMAHYAGLIAAGEYPNPVP-FADFITST 226 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~----gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S 226 (1342)
| +++++++++ ++++|++++++++ ...|+++|+++|++| |+++|+|++|+.+... .+.. .+|++++|
T Consensus 128 d-~~l~~~i~~-~t~lv~~~~~~nptG~~~~l~~i~~la~~~~~~~~~~livD~a~~~~~~~-----~~~~~~~di~~~S 200 (393)
T 1n8p_A 128 L-NDLPQLIKE-NTKLVWIETPTNPTLKVTDIQKVADLIKKHAAGQDVILVVDNTFLSPYIS-----NPLNFGADIVVHS 200 (393)
T ss_dssp H-HHHHHHSCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHHHTTTTTCEEEEECTTTHHHHC-----CGGGGTCSEEEEE
T ss_pred h-HHHHHhccc-CceEEEEECCCCCcceecCHHHHHHHHHHhCCCCCCEEEEeCCccccccC-----CHHHcCCeEEEEE
Confidence 6 888888765 4577777666665 445999999999999 9999999999877652 1222 37999999
Q ss_pred CCccCCCCCe----eEEEEe-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Q psy13354 227 THKSLRGPRG----GFILMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ 301 (1342)
Q Consensus 227 ~sK~l~gp~G----G~iv~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~ 301 (1342)
+||++ |+.| |+++++ +++++.+......+ +....+..+++.... +. .+....++..+++..+.+.|.+
T Consensus 201 ~sK~~-g~~G~rigG~~~~~~~~~~~~l~~~~~~~--g~~~~~~~~~~~~~~---l~-~~~~~~~~~~~~~~~l~~~L~~ 273 (393)
T 1n8p_A 201 ATKYI-NGHSDVVLGVLATNNKPLYERLQFLQNAI--GAIPSPFDAWLTHRG---LK-TLHLRVRQAALSANKIAEFLAA 273 (393)
T ss_dssp TTTTT-TCSSCCCCEEEEESCHHHHHHHHHHHHHH--CCCCCHHHHHHHHHH---HT-THHHHHHHHHHHHHHHHHHHTS
T ss_pred Ccccc-cCCCCceeEEEEeCCHHHHHHHHHHHHhc--CCCCCHHHHHHHHhc---cc-hHHHHHHHHHHHHHHHHHHHHh
Confidence 99999 5544 999985 67777776532221 222223333222221 22 3455667778888899999887
Q ss_pred CC
Q psy13354 302 RG 303 (1342)
Q Consensus 302 ~g 303 (1342)
.+
T Consensus 274 ~~ 275 (393)
T 1n8p_A 274 DK 275 (393)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 234
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*
Probab=99.62 E-value=6e-15 Score=178.36 Aligned_cols=294 Identities=15% Similarity=0.105 Sum_probs=178.0
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC-------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN------- 111 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~------- 111 (1342)
.+|.+.+++.+.+. .+. .... .+ .. ++..++++++++++|.+.+++ ++||++|+..++.++..
T Consensus 74 ~~p~v~~ai~~~~~-~~~--~~~~-~~-~~----~~~~~l~~~la~~~g~~~v~~-~~ggteA~~~al~~~~~~~~~~~~ 143 (420)
T 2pb2_A 74 CHPALVEALKSQGE-TLW--HTSN-VF-TN----EPALRLGRKLIDATFAERVLF-MNSGTEANETAFKLARHYACVRHS 143 (420)
T ss_dssp TCHHHHHHHHHHHT-TCC--CCCT-TS-CC----HHHHHHHHHHHHHSSCSEEEE-ESSHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHH-hcc--cccC-cc-CC----HHHHHHHHHHHhhCCCCeEEE-eCCHHHHHHHHHHHHHHHhhhccC
Confidence 36779999888874 332 1111 12 12 345556668999988765544 44999999999998865
Q ss_pred CC-CEEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-c
Q psy13354 112 PG-DTIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-Q 179 (1342)
Q Consensus 112 pG-D~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~ 179 (1342)
+| ++|++.+..+.+..... ....|.. ..+..++.+ |++++++.+++ ++++|++++++++ +
T Consensus 144 ~g~~~vi~~~~~yh~~~~~~--~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~le~~i~~-~~~~vi~~p~~~~gG 215 (420)
T 2pb2_A 144 PFKTKIIAFHNAFHGRSLFT--VSVGGQPKYSDGFGPKPADIIHVPFN-----DLHAVKAVMDD-HTCAVVVEPIQGEGG 215 (420)
T ss_dssp TTCCEEEEETTCCCCSSHHH--HHHSSCHHHHTTSSSCCSCEEEECTT-----CHHHHHHHCCT-TEEEEEECSEETTTT
T ss_pred CCCCEEEEEeCCcCCcCHHH--HHhcCCccccccCCCCCCCeEEecCC-----CHHHHHHHhcc-CceEEEEeCCcCCCC
Confidence 67 48888776655443221 1111211 113333433 89999998874 5677777665444 2
Q ss_pred -----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCCC-eeEEEEechhHHHHh
Q psy13354 180 -----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGPR-GGFILMKKKYKKIIN 250 (1342)
Q Consensus 180 -----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~-GG~iv~~~~l~~~l~ 250 (1342)
..++++|.++|++||++||+||+|. |....+.... ... .+|++ |+||+++++. .|++++++++++.+.
T Consensus 216 ~~~~~~~~l~~l~~l~~~~gi~lI~Dev~~-g~~~~g~~~~~~~~~~~~dii--t~sK~l~~G~~iG~~~~~~~l~~~l~ 292 (420)
T 2pb2_A 216 VQAATPEFLKGLRDLCDEHQALLVFDEVQC-GMGRTGDLFAYMHYGVTPDIL--TSAKALGGGFPVSAMLTTQEIASAFH 292 (420)
T ss_dssp SEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECHHHHTTCC
T ss_pred eecCCHHHHHHHHHHHHHcCCEEEEEcCCc-CcccCCcHHHHHhcCCCCCeE--EecccccCCCceEEEEEhHHHHHhhc
Confidence 2479999999999999999999995 4322222110 111 25776 5689995322 299999988776665
Q ss_pred hccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEee-CCCCCeEEEEEccCCC--C
Q psy13354 251 SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVS-GGTKSHIILVDLRNKK--I 325 (1342)
Q Consensus 251 ~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~-~~~~~~~v~i~~~~~~--~ 325 (1342)
.......++. ++..++++.+.++...+ +...+++.++++++.+.|.+. +++... ....+.++++.++... .
T Consensus 293 ~~~~~~t~~~--~~~~~aa~~a~L~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~ 368 (420)
T 2pb2_A 293 VGSHGSTYGG--NPLACAVAGAAFDIINT--PEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGR 368 (420)
T ss_dssp ----CCEECC--CHHHHHHHHHHHHHHSS--HHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEETTEEEEEECGGGTTC
T ss_pred CCCcCcccCc--CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHHHHhcCCCeEEEEecceEEEEEECCCchHH
Confidence 4222333332 23333344444444432 456788889999999988774 222111 1123567788876432 2
Q ss_pred CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 326 ~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
..++...+++ +||.+.+.. .+.+|++++...+
T Consensus 369 ~~~l~~~l~~-~Gi~v~~~~----------~~~iRl~~~~~~t 400 (420)
T 2pb2_A 369 ARDFLYAGAE-AGVMVLNAG----------ADVMRFAPSLVVE 400 (420)
T ss_dssp HHHHHHHHHH-TTEECEESS----------TTEEEECCCTTCC
T ss_pred HHHHHHHHHH-CCCEEEeCC----------CCEEEEECCCCCC
Confidence 4456666665 699998641 2469999765444
No 235
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*
Probab=99.62 E-value=8.9e-15 Score=177.89 Aligned_cols=303 Identities=13% Similarity=0.082 Sum_probs=173.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--cCCCC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV--LNPGD 114 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al--~~pGD 114 (1342)
.+|.+.+++.+.+.. +. .+. +.. +..++..+++++++++++.. +.+++++||++|+..++.++ ..+++
T Consensus 60 ~~p~v~~a~~~~~~~-~~-~~~---~~~---~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~ 131 (439)
T 3dxv_A 60 GHPAIVAAVSAAAAN-PA-GAT---ILS---ASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRS 131 (439)
T ss_dssp SCHHHHHHHHHHHHS-CS-CSC---SSS---SEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHHh-cc-Ccc---ccc---cCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHhCCC
Confidence 467799998888753 21 111 111 11245556667999998532 35566669999999999885 34667
Q ss_pred EEEEeeccCCccchhhHHhhhCCcee------------EEEEecCCCCCCC-----CHHHHHHHHH---hcCCeEEEEcC
Q psy13354 115 TIMGMSLQEGGHLTHGMMLNMSGKWF------------NSICYGLNKKEKI-----DYKKVEYLAK---KNKPKLIIAGA 174 (1342)
Q Consensus 115 ~Vlv~~~~~~~~~s~~~~~~~~g~~~------------~~v~~~~~~~~~i-----d~e~Le~~i~---~~~~~liv~~~ 174 (1342)
.|++.+..+.+..... ....+... .+..++.+..+.. |++++++++. ..+++++++.+
T Consensus 132 ~vi~~~~~yhg~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p 209 (439)
T 3dxv_A 132 GVIAFAGAYHGCTVGS--MAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEP 209 (439)
T ss_dssp EEEEETTCCCCSSHHH--HCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECS
T ss_pred EEEEECCCCCCCcHHH--HhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEcc
Confidence 7777665554333222 11111100 1112233222222 6899999985 34556777766
Q ss_pred CCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC-CeeEEEEech
Q psy13354 175 SAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP-RGGFILMKKK 244 (1342)
Q Consensus 175 s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~ 244 (1342)
++++ ...+ +++|+++|++||++||+||+|+ |+...+... .... ..|++ |+||++++. ..||++++++
T Consensus 210 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DE~~~-g~g~~g~~~~~~~~~~~~di~--s~sK~~~~G~riG~~~~~~~ 286 (439)
T 3dxv_A 210 IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKV-GLARSGRLHCFEHEGFVPDIL--VLGKGLGGGLPLSAVIAPAE 286 (439)
T ss_dssp SBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTT-CTTTTSSSSGGGGTTCCCSEE--EECGGGGTTSCCEEEEEEHH
T ss_pred ccCCCCCccCCHHHHHHHHHHHHHcCCEEEEecccc-CCCcCchhhHHHhcCCCCCEE--EEcchhcCCcceEEEEECHH
Confidence 4443 2334 9999999999999999999996 321112111 1111 24666 778999431 2299999998
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEc
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDL 320 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~ 320 (1342)
+++.+........+ . ++...+++.+..+...+ +.+.+++.++++++.+.|.+. +..... +..+.++++.+
T Consensus 287 ~~~~~~~~~~~~t~--~-~~~~~~aa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~g~~~~~~~ 360 (439)
T 3dxv_A 287 ILDCASAFAMQTLH--G-NPISAAAGLAVLETIDR--DDLPAMAERKGRLLRDGLSELAKRHPLIGDI-RGRGLACGMEL 360 (439)
T ss_dssp HHTSCSSSSCCTTT--T-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEE-EEETTEEEEEE
T ss_pred HHhhhcCCCcCCCc--c-cHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCeEEE-EEEEEEEEEEE
Confidence 88777654333333 2 33333333333333321 334566777777777777653 322111 12355677766
Q ss_pred c--------CCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 321 R--------NKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 321 ~--------~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
. ......++...++++ ||.+.+.... .+++|++++..++.
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~~~~--------~~~iRi~~~~~~t~ 408 (439)
T 3dxv_A 361 VCDRQSREPARAETAKLIYRAYQL-GLVVYYVGMN--------GNVLEFTPPLTITE 408 (439)
T ss_dssp EEETTTTEECHHHHHHHHHHHHHH-TEECEEESTT--------SCEEEECCCTTCCH
T ss_pred ecCccccCCCHHHHHHHHHHHHHC-CcEEeecCCC--------CCEEEEECCCCCCH
Confidence 2 111234566667665 9999876211 35799988776554
No 236
>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*
Probab=99.62 E-value=3.2e-15 Score=178.91 Aligned_cols=306 Identities=11% Similarity=0.028 Sum_probs=186.9
Q ss_pred cCceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcchH-----HHHHHHHHHHHHHHhCC---C-CceEec
Q psy13354 27 NNNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCKFI-----DLIEKIAINRLKKIFNA---E-AANVQP 95 (1342)
Q Consensus 27 ~~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~~~-----~~Le~~~~~~la~~~g~---~-~~vi~~ 95 (1342)
.+.+.+..+....+++ +.+++.+... .........|+...+. .++++++++++. ..|. + +.++++
T Consensus 22 ~~~i~l~~g~p~~~~~~~~~~~~~~~~~---~~~~~~~~~Y~~~~G~~~~~~~~lr~aia~~~~-~~g~~~~~~~~i~~t 97 (391)
T 3bwn_A 22 DFVVNLDHGDPTAYEEYWRKMGDRCTVT---IRGCDLMSYFSDMTNLCWFLEPELEDAIKDLHG-VVGNAATEDRYIVVG 97 (391)
T ss_dssp TSCEECSSCCCGGGHHHHHHTGGGSCEE---ECTTTTCSSCSCTTSSSTTSCHHHHHHHHHHHH-HHCSBCCSSSEEEEE
T ss_pred CCeeEcCCCCCCCCCCHHHHHhHHHHhh---cCccchhhcCCCCCCcccccCHHHHHHHHHHHH-hcCCCCCCCCeEEEe
Confidence 3457777766544333 3333221110 0111122334444554 788886666655 2342 2 356666
Q ss_pred CCHHHHHHHHHHHccCCCC----EEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEEE
Q psy13354 96 HSGSQANQAVFFSVLNPGD----TIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLII 171 (1342)
Q Consensus 96 ~sGs~A~~~al~al~~pGD----~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv 171 (1342)
+|+++|+..++.++++||| +|++..+.|+ .+...+...|..+..+++ +.++ ++ ..++++++
T Consensus 98 ~G~~~al~~~~~~l~~~Gd~~~~~Vlv~~P~y~---~~~~~~~~~g~~~~~~~~--d~~~-l~---------~~~~k~v~ 162 (391)
T 3bwn_A 98 TGSTQLCQAAVHALSSLARSQPVSVVAAAPFYS---TYVEETTYVRSGMYKWEG--DAWG-FD---------KKGPYIEL 162 (391)
T ss_dssp EHHHHHHHHHHHHHHHTSSSSSEEEEECSSCCT---HHHHHHHTTCBTTEEEEE--ESTT-CC---------CCSCEEEE
T ss_pred CChHHHHHHHHHHhcCCCCCCcceEEEcCCCch---hHHHHHHHcCCeEEEecC--CHHH-cC---------CCCCEEEE
Confidence 4778899999999999999 9997775554 445555667775555543 3222 12 13567776
Q ss_pred EcCCCCCcccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCCCCcEEEecCCccCCCCCe---eEEEE-echhHH
Q psy13354 172 AGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG---GFILM-KKKYKK 247 (1342)
Q Consensus 172 ~~~s~~~~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~~~Divv~S~sK~l~gp~G---G~iv~-~~~l~~ 247 (1342)
+++++||+-.-+.+|++.++.++++||+|++|..+.. .........+++++||||++ |++| ||+++ ++++++
T Consensus 163 l~~p~NPtG~~~~~l~~~~~~~~~~ii~De~y~~~~~---~~l~~~~~~~i~~~S~SK~~-g~~GlRiG~~~~~~~~l~~ 238 (391)
T 3bwn_A 163 VTSPNNPDGTIRETVVNRPDDDEAKVIHDFAYYWPHY---TPITRRQDHDIMLFTFSKIT-GHAGSRIGWALVKDKEVAK 238 (391)
T ss_dssp EESSCTTTCCCCCCCC-----CCCEEEEECTTCSTTT---SCCCCCBCCSEEEEEHHHHH-SCGGGCEEEEEECCHHHHH
T ss_pred ECCCCCCCchhHHHHHHHhhcCCCEEEEeCCCCCCCC---CccccCCCCeEEEEechhhc-CCCccceEEEEecCHHHHH
Confidence 6777777222123454422223399999999973211 00111112579999999999 7777 99997 788888
Q ss_pred HHhhccCCccccCCcHHHHHHHHHHHHHhc---------cchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeC--------
Q psy13354 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVL---------KPDFKIYQKQVVKNAKILSKILDQR-GIRIVSG-------- 309 (1342)
Q Consensus 248 ~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l---------~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~-------- 309 (1342)
.+..... ....+++.+.+.++..++.... ..+++..++.+.++++++.+.|.+. ++.+..+
T Consensus 239 ~l~~~~~-~~~~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~p~~~~~~f~ 317 (391)
T 3bwn_A 239 KMVEYII-VNSIGVSKESQVRTAKILNVLKETCKSESESENFFKYGREMMKNRWEKLREVVKESDAFTLPKYPEAFCNYF 317 (391)
T ss_dssp HHHHHHH-HHHSSCCHHHHHHHHHHHHHHHHHTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHTCSSEECCCCCCEEETTT
T ss_pred HHHHHhc-ccccCCCHHHHHHHHHHHhCcchhccccccHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCccccccc
Confidence 7766432 1223445666766666665432 4578888999999999999999986 5554321
Q ss_pred ----CCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 310 ----GTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 310 ----~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
+..+.++|+.++.. +.+..+++++||.+.++..++. ..+++|++++.
T Consensus 318 ~~~~~~~g~~~~~~~~~~----~~~~~~l~~~gV~v~pg~~fg~-----~~~~iRis~~~ 368 (391)
T 3bwn_A 318 GKSLESYPAFAWLGTKEE----TDLVSELRRHKVMSRAGERCGS-----DKKHVRVSMLS 368 (391)
T ss_dssp TEEECCCCSEEEEEESSS----CCHHHHHHHTTEECEEGGGGTC-----CTTEEEEESCS
T ss_pred cccCCCcceEEEecCCcH----HHHHHHHHHCCEEEccCCCCCC-----CCCEEEEEecC
Confidence 12334789988742 3566777778999999876643 14579999984
No 237
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}
Probab=99.61 E-value=5.7e-14 Score=171.48 Aligned_cols=317 Identities=13% Similarity=0.086 Sum_probs=180.9
Q ss_pred ceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++ .+++ +|.+.+|+.+.+. ... +. . ..... +...+++++++++++.+..+++++||++|+.
T Consensus 51 ~lD~~~~~~~~~lG~~~p~v~~A~~~~~~-~~~--~~-~-~~~~~----~~~~~la~~l~~~~~~~~~v~~~~ggseA~~ 121 (452)
T 3n5m_A 51 YLDGMSGLWCVNSGYGRKELAEAAYKQLQ-TLS--YF-P-MSQSH----EPAIKLAEKLNEWLGGEYVIFFSNSGSEANE 121 (452)
T ss_dssp EEETTHHHHTCTTCBCCHHHHHHHHHHHT-TCC--CC-C-TTSEE----HHHHHHHHHHHHHHTSCEEEEEESSHHHHHH
T ss_pred EEECCcchhhccCCCCCHHHHHHHHHHHH-hcC--Cc-c-cccCC----HHHHHHHHHHHHhCCCCceEEEeCchHHHHH
Confidence 4555555 2333 5779999888884 221 11 1 11112 4455566689998886633777779999999
Q ss_pred HHHHHcc-----C---CCCEEEEeeccCCccchhhHHhhh----------CCceeEEEEecCCCCCCC-C---------H
Q psy13354 104 AVFFSVL-----N---PGDTIMGMSLQEGGHLTHGMMLNM----------SGKWFNSICYGLNKKEKI-D---------Y 155 (1342)
Q Consensus 104 ~al~al~-----~---pGD~Vlv~~~~~~~~~s~~~~~~~----------~g~~~~~v~~~~~~~~~i-d---------~ 155 (1342)
.+++++. . ++|+|++....+.++........- ...++..++.+....... | +
T Consensus 122 ~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (452)
T 3n5m_A 122 TAFKIARQYYAQKGEPHRYKFMSRYRGYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECV 201 (452)
T ss_dssp HHHHHHHHHHHTTTCTTCCEEEEETTCCCCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHH
Confidence 9999886 5 789999877666554322211100 001122332221111100 2 8
Q ss_pred HHHHHHHH---hcCCeEEEEcCC-CCCc-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCC--CCCC-CCcE
Q psy13354 156 KKVEYLAK---KNKPKLIIAGAS-AYSQ-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYP--NPVP-FADF 222 (1342)
Q Consensus 156 e~Le~~i~---~~~~~liv~~~s-~~~~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~--~~l~-~~Di 222 (1342)
++|++.++ ..+.+++++.+. ++++ ..+ +++|+++|++||++||+||+|. +|.. +... .... ..|+
T Consensus 202 ~~le~~l~~~~~~~~~~vi~ep~~~n~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~--g~~~~~~~~~~~~di 279 (452)
T 3n5m_A 202 KEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRT--GKAFGFMNYDVKPDI 279 (452)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT--SSSSGGGGTTCCCSE
T ss_pred HHHHHHHHhcCCCCEEEEEEccccCCCCeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcc--cccchhhhcCCCCCE
Confidence 99999887 334566777665 2253 233 9999999999999999999986 3221 1111 1111 2466
Q ss_pred EEecCCccCCCC-Ce-eEEEEechhHHHHhh----cc--CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHH
Q psy13354 223 ITSTTHKSLRGP-RG-GFILMKKKYKKIINS----AV--FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKI 294 (1342)
Q Consensus 223 vv~S~sK~l~gp-~G-G~iv~~~~l~~~l~~----~~--~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~ 294 (1342)
++ +||+++++ .. |++++++++++.+.. .. ....++ . ++..++++.+..+...+ +.+.+++.++.++
T Consensus 280 ~t--~sK~l~~G~~~ig~~~~~~~i~~~~~~~~~~~~~~~~~t~~-~-~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~ 353 (452)
T 3n5m_A 280 IT--MAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFG-G-NPAACALALKNLEIIEN--ENLIERSAQMGSL 353 (452)
T ss_dssp EE--ECGGGGTTSSCCEEEEEEHHHHGGGCSSSTTCSCCCCCSST-T-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHH
T ss_pred Ee--ecccccCCCcceEEEEECHHHHHHHhhccCCCCccccCCCC-C-CHHHHHHHHHHHHHHHh--ccHHHHHHHHHHH
Confidence 64 66999442 22 999999999888743 11 112222 2 33444444444443321 2345667777777
Q ss_pred HHHHHHhC----C-cEEeeCCCCCeEEEEEccCCCC---------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccc
Q psy13354 295 LSKILDQR----G-IRIVSGGTKSHIILVDLRNKKI---------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIR 360 (1342)
Q Consensus 295 l~~~L~~~----g-~~~~~~~~~~~~v~i~~~~~~~---------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lR 360 (1342)
+++.|.+. + +.... ..+.++++.+..... ..++...+++ +||.+.+...|.. .. .+++|
T Consensus 354 l~~~L~~~~~~~~~~~~~~--~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~~~~~~-~~---~~~iR 426 (452)
T 3n5m_A 354 LLEQLKEEIGEHPLVGDIR--GKGLLVGIELVNDKETKEPIDNDKIASVVNACKE-KGLIIGRNGMTTA-GY---NNILT 426 (452)
T ss_dssp HHHHHHHHHTTCTTEEEEE--ESSSCEEEEEEEETTTTEECCHHHHHHHHHHHHH-TTEECEECTTSST-TC---CCEEE
T ss_pred HHHHHHHHHhcCCCeEEEE--EEEEEEEEEEecCCcccCCCCHHHHHHHHHHHHH-CCcEEeecCcccC-CC---CCEEE
Confidence 77777653 2 22222 233455555532111 1245555555 5999998765532 21 46799
Q ss_pred ccccccccc
Q psy13354 361 LGSSAITTR 369 (1342)
Q Consensus 361 i~~~~~~t~ 369 (1342)
++++..++.
T Consensus 427 i~~~~~~t~ 435 (452)
T 3n5m_A 427 LAPPLVISS 435 (452)
T ss_dssp ECCCTTCCH
T ss_pred EECCCCCCH
Confidence 987776554
No 238
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.61 E-value=4.5e-15 Score=176.95 Aligned_cols=238 Identities=16% Similarity=0.160 Sum_probs=158.3
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCC--CCCCCcccCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGI--DGNGGITSQPCG 454 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~--~~~~~~~~~~c~ 454 (1342)
++..+|.| ++++|++..++.+...+.. +..++.++|+||+|+|||++++.+++.+..... .......+..|.
T Consensus 11 ~l~~~~~p---~~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 11 VLLPDYVP---DVLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp HHSTTCCC---SCCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred hcCCccCC---CCCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 56667777 7899999999999998854 355667999999999999999999998843100 000011112222
Q ss_pred CCcchhhhccCCCccEEEEcc-CCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCCHH--HHHHHHHhhc---CC-
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDA-ASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLTHH--AFNAMLKTLE---EP- 526 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~-~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~--~~~~Ll~~Le---~p- 526 (1342)
.+.+...+.......+ .... ........ +..+...+. ..+.+.+|+|||+|.+... ..+.|..+++ ..
T Consensus 88 ~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~vlilDEi~~l~~~~~~~~~l~~l~~~~~~~~ 163 (387)
T 2v1u_A 88 HRETPYRVASAIAEAV-GVRVPFTGLSVGEVYERLVKRLS---RLRGIYIIVLDEIDFLPKRPGGQDLLYRITRINQELG 163 (387)
T ss_dssp TSCSHHHHHHHHHHHH-SCCCCSSCCCHHHHHHHHHHHHT---TSCSEEEEEEETTTHHHHSTTHHHHHHHHHHGGGCC-
T ss_pred cCCCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHh---ccCCeEEEEEccHhhhcccCCCChHHHhHhhchhhcC
Confidence 2221111000000000 0000 00111222 222222221 1344669999999998654 4555555543 32
Q ss_pred -CCcEEEEEEeCCC---CCChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHh--cCCCcchhHHHHHHHhcC---CcHH
Q psy13354 527 -PKYIKFILATTEP---QKIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNK--ENIKFETSALNLIATGAQ---GSMR 595 (1342)
Q Consensus 527 -~~~~vlIl~t~~~---~kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~--~g~~i~~~al~~La~~~~---g~lr 595 (1342)
+..+++|++++.. ..+.+.+.+|+ ..+.|++++.+++..++..++.. .+..+++++++.+++.++ ||+|
T Consensus 164 ~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r 243 (387)
T 2v1u_A 164 DRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDAR 243 (387)
T ss_dssp ----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHH
T ss_pred CCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHH
Confidence 5677889999887 57788999999 79999999999999999999876 567899999999999998 9999
Q ss_pred HHHHHHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 596 DALSLTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 596 ~a~~~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
.+++.++.+..++ ...|+.++|.+++...
T Consensus 244 ~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 244 RALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 9999999987665 2459999999887554
No 239
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=4.7e-15 Score=176.89 Aligned_cols=217 Identities=17% Similarity=0.167 Sum_probs=155.5
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
+|..+|.| ++++|++..++.+...+.. +..+++++|+||+|+|||++++.+++.+......
T Consensus 12 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~------------- 75 (384)
T 2qby_B 12 FIDPLSVF---KEIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKE------------- 75 (384)
T ss_dssp TTCHHHHC---SSCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHH-------------
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhh-------------
Confidence 56677777 7899999999988877754 5666789999999999999999999988431000
Q ss_pred cchhhhccCC-CccEEEEccCCCc------------------------CHHH-HHHHHHHHhhcCccCCceEEEeccCcc
Q psy13354 457 SVCVKIDNGC-FMDYIEMDAASTR------------------------GINE-MAQLLEQTIYAPINARYKIYVIDEVHM 510 (1342)
Q Consensus 457 ~~~~~~~~~~-~~d~~~i~~~~~~------------------------~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~ 510 (1342)
..+. ...++.+++.... .... +..+.+.+ ...+.+|+|||+|.
T Consensus 76 ------~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l-----~~~~~vlilDEi~~ 144 (384)
T 2qby_B 76 ------DEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGT-----RNIRAIIYLDEVDT 144 (384)
T ss_dssp ------SSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHH-----SSSCEEEEEETTHH
T ss_pred ------hcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHh-----ccCCCEEEEECHHH
Confidence 0000 0122333321111 0111 22222222 11223999999998
Q ss_pred CCHHH-HHH-HHHhhcCCCCcEEEEEEeCCC---CCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHh--cCCCcchhH
Q psy13354 511 LTHHA-FNA-MLKTLEEPPKYIKFILATTEP---QKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNK--ENIKFETSA 582 (1342)
Q Consensus 511 L~~~~-~~~-Ll~~Le~p~~~~vlIl~t~~~---~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~--~g~~i~~~a 582 (1342)
+.... .+. |..+++.. ..+.+|++++.. +.+.+.+.+|+ ..+.|++++.+++.+++..++.. .+..+++++
T Consensus 145 l~~~~~~~~~l~~l~~~~-~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~ 223 (384)
T 2qby_B 145 LVKRRGGDIVLYQLLRSD-ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEI 223 (384)
T ss_dssp HHHSTTSHHHHHHHHTSS-SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHH
T ss_pred hccCCCCceeHHHHhcCC-cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHH
Confidence 86432 344 44445444 678899999887 57788999995 79999999999999999999875 456799999
Q ss_pred HHHHHHhcC---CcHHHHHHHHHHHHhhcC--CCCCHHHHHHHhccC
Q psy13354 583 LNLIATGAQ---GSMRDALSLTDQAINYSS--EKITLNSMQEMLSII 624 (1342)
Q Consensus 583 l~~La~~~~---g~lr~a~~~L~kl~~~~~--~~It~e~V~~~v~~~ 624 (1342)
++.+++.++ ||+|.+++.++.+...+. ..|+.++|.+++...
T Consensus 224 ~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 224 LSYIAAISAKEHGDARKAVNLLFRAAQLASGGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp HHHHHHHHHTTCCCHHHHHHHHHHHHHHTTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 999999998 999999999999887764 469999999887554
No 240
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}
Probab=99.61 E-value=2.1e-14 Score=175.05 Aligned_cols=302 Identities=11% Similarity=0.050 Sum_probs=179.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN------ 111 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~------ 111 (1342)
.+|.+.+++.+.+.. +. + +.+..+.. ++..++++.++++++.+ +.+++++||++|+..++.++..
T Consensus 67 ~~~~v~~a~~~~~~~-~~--~--~~~~~~~~---~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~~~~g 138 (449)
T 3a8u_X 67 TRKEIQEAVAKQLST-LD--Y--SPGFQYGH---PLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKG 138 (449)
T ss_dssp SCHHHHHHHHHHTTT-CS--C--CCSSSCCC---HHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHh-CC--C--ccccccCC---HHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHHHhcC
Confidence 367799998888742 21 1 11101111 33445666888888654 4556666999999999988753
Q ss_pred --CCCEEEEeeccCCccchhhHHhhhCC------------ceeEEEEecCC--CC-CCCC--------HHHHHHHHHh--
Q psy13354 112 --PGDTIMGMSLQEGGHLTHGMMLNMSG------------KWFNSICYGLN--KK-EKID--------YKKVEYLAKK-- 164 (1342)
Q Consensus 112 --pGD~Vlv~~~~~~~~~s~~~~~~~~g------------~~~~~v~~~~~--~~-~~id--------~e~Le~~i~~-- 164 (1342)
+||+|++.+..+.+...... ...| .++..++++.. .. ..+| ++++++.+++
T Consensus 139 ~~~~~~vi~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~ 216 (449)
T 3a8u_X 139 QATKTKMIGRARGYHGVNIAGT--SLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHD 216 (449)
T ss_dssp CTTCCEEEEETTCCCCSSHHHH--HHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHC
T ss_pred CCCCCEEEEECCCcCCCChhhh--hccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcC
Confidence 68999987766654432211 1111 12345544431 11 0146 9999999874
Q ss_pred -cCCeEEEEcCCCC-Cc-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCCCCC-CCcEEEecCCccCCC--
Q psy13354 165 -NKPKLIIAGASAY-SQ-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPNPVP-FADFITSTTHKSLRG-- 233 (1342)
Q Consensus 165 -~~~~liv~~~s~~-~~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~~l~-~~Divv~S~sK~l~g-- 233 (1342)
.++++|++.+.++ ++ ..+ +++|.++|++||++||+||+|. +|..+......... ..|++ |+||++++
T Consensus 217 ~~~~~~vi~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~--s~sK~l~~G~ 294 (449)
T 3a8u_X 217 ASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLM--CIAKQVTNGA 294 (449)
T ss_dssp GGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEE--EECGGGGTTS
T ss_pred CCCEEEEEEcCccCCCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEE--EEcccccCCC
Confidence 2446666655433 23 356 9999999999999999999994 44321100000011 24766 67799954
Q ss_pred CCeeEEEEechhHHHHhhcc---------CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-
Q psy13354 234 PRGGFILMKKKYKKIINSAV---------FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG- 303 (1342)
Q Consensus 234 p~GG~iv~~~~l~~~l~~~~---------~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g- 303 (1342)
...|++++++++++.+.... ..+.++ . ++..++++.+..+.+.+ +.+.+++.++++++.+.|.+.+
T Consensus 295 ~~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~t~~-~-~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~l~~~L~~l~~ 370 (449)
T 3a8u_X 295 IPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYS-A-HPVACAAGLAALCLLQK--ENLVQSVAEVAPHFEKALHGIKG 370 (449)
T ss_dssp SCCEEEEEEHHHHHHHHTCSSCTTSCSSCCCCTTT-T-CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHTTTT
T ss_pred CceEEEEECHHHHHHhhccCcccccccccccCCCc-c-cHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHhc
Confidence 23488899999988887631 111222 2 23333333333443321 2356788888999999997743
Q ss_pred cEEee-CCCCCeEEEEEccCCCCC-----HHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 304 IRIVS-GGTKSHIILVDLRNKKIT-----GKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 304 ~~~~~-~~~~~~~v~i~~~~~~~~-----~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++... .+..++++|+.++..... .++...++++ ||.+.+. .+.+|++++..++
T Consensus 371 ~~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~l~~~-Gv~v~~~-----------g~~iRis~~~~~t 429 (449)
T 3a8u_X 371 AKNVIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKA-GFYVRFG-----------GDTLQFGPTFNSK 429 (449)
T ss_dssp STTEEEEEEETTEEEEEECCBTTBSSHHHHHHHHHHHHH-TEECEEE-----------TTEEEECCCTTCC
T ss_pred CCCeEEEeeeEEEEEEEEecCcccccccHHHHHHHHHHC-CcEEecC-----------CCEEEEECCCcCC
Confidence 22111 113457888888754222 2566667665 9999875 1369999765544
No 241
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*
Probab=99.61 E-value=4.1e-15 Score=178.28 Aligned_cols=293 Identities=14% Similarity=0.111 Sum_probs=179.3
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccC------C
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLN------P 112 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~------p 112 (1342)
.+|.+.+++.+.+.. +. .... .| .. +...++++.+++++|.+.+++++ ||++|+..++.++.. +
T Consensus 57 ~~~~v~~a~~~~~~~-~~--~~~~-~~-~~----~~~~~l~~~la~~~g~~~v~~~~-gg~~a~~~al~~~~~~~~~~~~ 126 (397)
T 2ord_A 57 SHPRLVEAIKDQAEK-LI--HCSN-LF-WN----RPQMELAELLSKNTFGGKVFFAN-TGTEANEAAIKIARKYGKKKSE 126 (397)
T ss_dssp TCHHHHHHHHHHHHH-CS--CCCT-TS-EE----HHHHHHHHHHHHTTTSCEEEEES-SHHHHHHHHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHHHHh-cc--cCcc-cc-CC----HHHHHHHHHHHHhcCCCeEEEeC-CHHHHHHHHHHHHHHHhhcCCC
Confidence 367799999888753 32 1111 12 12 34455666899999876555544 999999999998753 5
Q ss_pred -CCEEEEeeccCCccchhhHHhhhCCce----------eEEEEecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cc
Q psy13354 113 -GDTIMGMSLQEGGHLTHGMMLNMSGKW----------FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QY 180 (1342)
Q Consensus 113 -GD~Vlv~~~~~~~~~s~~~~~~~~g~~----------~~~v~~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~ 180 (1342)
++.|++.+..+.+.... .+...|.. ..++.++.+ |++++++.+++ ++++|+++++++| +.
T Consensus 127 ~~~~vi~~~~~yh~~~~~--~~~~~g~~~~~~~~~p~~~~~~~~~~~-----d~~~l~~~l~~-~~~~v~~~~~~nptG~ 198 (397)
T 2ord_A 127 KKYRILSAHNSFHGRTLG--SLTATGQPKYQKPFEPLVPGFEYFEFN-----NVEDLRRKMSE-DVCAVFLEPIQGESGI 198 (397)
T ss_dssp TCCEEEEEBTCCCCSSHH--HHHHSBCHHHHGGGCSCCTTEEEECTT-----CHHHHHHHCCT-TEEEEEECSEECTTTC
T ss_pred CCceEEEEcCCcCCCchh--hhhccCChhhccccCCCCCCeeEecCC-----CHHHHHHHhhc-CeEEEEEecccCCCCc
Confidence 47888776555433221 22223321 013334443 89999998864 5677777776665 33
Q ss_pred -----cCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCCCe-eEEEEechhHHHHhh
Q psy13354 181 -----IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGPRG-GFILMKKKYKKIINS 251 (1342)
Q Consensus 181 -----~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~G-G~iv~~~~l~~~l~~ 251 (1342)
.++++|+++|++||++||+||+|+ +....+.... .++ .+|++ |+||+++++.+ |+++++++++ .+..
T Consensus 199 ~~~~~~~l~~l~~l~~~~~~~li~De~~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~r~G~~~~~~~~~-~l~~ 274 (397)
T 2ord_A 199 VPATKEFLEEARKLCDEYDALLVFDEVQC-GMGRTGKLFAYQKYGVVPDVL--TTAKGLGGGVPIGAVIVNERAN-VLEP 274 (397)
T ss_dssp EECCHHHHHHHHHHHHHHTCEEEEECTTT-TTTTTSSSSHHHHHTCCCSEE--EECGGGGTTSCCEEEEECSTTC-CCCT
T ss_pred ccCCHHHHHHHHHHHHHcCCEEEEEeccc-CCccCccchhhhhhCCCCCee--eeccccCCCcCeEEEEEchHhc-ccCC
Confidence 479999999999999999999996 4322222111 011 25766 66899953223 9999998876 5543
Q ss_pred ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEee-CCCCCeEEEEEccCCCCCHH
Q psy13354 252 AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVS-GGTKSHIILVDLRNKKITGK 328 (1342)
Q Consensus 252 ~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~-~~~~~~~v~i~~~~~~~~~~ 328 (1342)
......++ .+...++++..++.. ... ++..+++.++++++.+.|++. +++... .+..++++++.++......+
T Consensus 275 ~~~~~~~~-~~~~~~~a~~~~l~~-~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 350 (397)
T 2ord_A 275 GDHGTTFG-GNPLACRAGVTVIKE-LTK--EGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVSNRE 350 (397)
T ss_dssp TSSCCSST-TCHHHHHHHHHHHHH-HTS--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEEEETTEEEEEECTTSCHHH
T ss_pred CCcCCCCC-CCHHHHHHHHHHHHH-HHh--CCHHHHHHHHHHHHHHHHHHHHHhCCceEEEEEEeEEEEEEECChHHHHH
Confidence 22222222 334444444444433 332 356788888999999988775 232111 11235678888875433455
Q ss_pred HHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 329 IAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 329 ~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
+...+++ +||.+.+.. .+.+|++++..++
T Consensus 351 l~~~l~~-~gi~v~~~~----------~~~iRis~~~~~~ 379 (397)
T 2ord_A 351 VATKCFE-NKLLVVPAG----------NNTIRFLPPLTVE 379 (397)
T ss_dssp HHHHHHH-TTEECEEET----------TTEEEECCCTTCC
T ss_pred HHHHHHH-CCCEEccCC----------CCEEEEECCcCCC
Confidence 6666665 699998751 3469999765444
No 242
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=99.61 E-value=1.6e-14 Score=182.28 Aligned_cols=217 Identities=18% Similarity=0.151 Sum_probs=146.7
Q ss_pred HHHHHHHHhCCCCceEecCCH-HHHHHHHHHHccCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC-CCCC---
Q psy13354 78 AINRLKKIFNAEAANVQPHSG-SQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEK--- 152 (1342)
Q Consensus 78 ~~~~la~~~g~~~~vi~~~sG-s~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~-~~~~--- 152 (1342)
+++.+++++|++++++++ +| +.|+.++++++++|||+|++.. ++|.+....+...|. .++.++.+ +++.
T Consensus 200 aE~~lA~~fGa~~a~~v~-nGts~An~~ai~al~~pGD~VLv~r---~~H~S~~~~l~lsGa--~pv~v~~~~~~~gi~~ 273 (715)
T 3n75_A 200 AEQYIARVFNADRSYMVT-NGTSTANKIVGMYSAPAGSTILIDR---NCHKSLTHLMMMSDV--TPIYFRPTRNAYGILG 273 (715)
T ss_dssp HHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHHCCTTCEEEEES---SCCHHHHHHHHHSCC--EEEEECCCBCTTCCBC
T ss_pred HHHHHHHHhCCCCceEEC-cHHHHHHHHHHHHhCCCCCEEEECC---CccHHHHHHHHHcCC--EEEEEecccccccccc
Confidence 444999999999988888 55 6899999999999999999666 566666666777787 44444433 2232
Q ss_pred -C-----CHHHHHHHHHhcC----CeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCC--CCCCC-
Q psy13354 153 -I-----DYKKVEYLAKKNK----PKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY--PNPVP- 218 (1342)
Q Consensus 153 -i-----d~e~Le~~i~~~~----~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~--~~~l~- 218 (1342)
+ |+++++++++++. |++++++++++. ...++++|+++|++++ |++||||+.+....... ...+.
T Consensus 274 ~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~pn~~G~v~dl~~I~ela~~~~--livDEAH~~~~~f~~~~~~~~al~~ 351 (715)
T 3n75_A 274 GIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYNTDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSG 351 (715)
T ss_dssp CCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESSCTTSEEECHHHHHHHCCCSE--EEEECTTCTTGGGSGGGTTSSTTSS
T ss_pred CcccccCCHHHHHHHHhhCcCccCceEEEEECCCCCCccCCHHHHHHHhCcCc--EEEccccccccccCCcccccccccc
Confidence 3 8999999998642 235555455544 5559999999998774 79999998765222111 12222
Q ss_pred --CCcEE---EecCCccCCCCC-eeEEEEechhH-HHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy13354 219 --FADFI---TSTTHKSLRGPR-GGFILMKKKYK-KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 219 --~~Div---v~S~sK~l~gp~-GG~iv~~~~l~-~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~ 291 (1342)
.+|++ ++|+||+++|+. ||++.+++++. ..+.........++++.+..+++.++...+......+.++++.++
T Consensus 352 g~~aD~vii~~~S~hKtL~gltqgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~AsldaA~~~~~~~~g~~~~~~l~~~ 431 (715)
T 3n75_A 352 GRVEGKVIYETQSTHKLLAAFSQASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVASTETAAAMMKGNAGKRLINGSIER 431 (715)
T ss_dssp SCCTTCEEEEEECHHHHSSCCTTCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHH
T ss_pred CcCCCEEEEEEecccccccCCCCeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 14654 899999998874 58888877532 233332222333455555666655554443222455678899999
Q ss_pred HHHHHHHHHhC
Q psy13354 292 AKILSKILDQR 302 (1342)
Q Consensus 292 a~~l~~~L~~~ 302 (1342)
+.++++.|.+.
T Consensus 432 a~~~r~~L~~i 442 (715)
T 3n75_A 432 AIKFRKEIKRL 442 (715)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998774
No 243
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.61 E-value=1e-14 Score=169.41 Aligned_cols=193 Identities=15% Similarity=0.159 Sum_probs=150.2
Q ss_pred hccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
..+.+.+|++++|++.+++.|.+.+.. ...++++|||||||||||++|+++++.+.+
T Consensus 4 ~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~------------ 71 (322)
T 1xwi_A 4 IERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN------------ 71 (322)
T ss_dssp EECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTS------------
T ss_pred ecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCC------------
Confidence 346677999999999999999988741 234578999999999999999999998831
Q ss_pred CCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HH
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HH 514 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~ 514 (1342)
..++.++++. ......++.++..+.. ..+.||+|||+|.+. ..
T Consensus 72 ----------------~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~ 131 (322)
T 1xwi_A 72 ----------------STFFSISSSDLVSKWLGESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEAARR 131 (322)
T ss_dssp ----------------CEEEEEECCSSCCSSCCSCHHHHHHHHHHHHH----TSSEEEEEETTTGGGCCSSSCCTTHHHH
T ss_pred ----------------CcEEEEEhHHHHhhhhhHHHHHHHHHHHHHHh----cCCcEEEeecHHHhccccccccchHHHH
Confidence 1233343321 1223456666665543 345699999999882 23
Q ss_pred HHHHHHHhhcC---CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc
Q psy13354 515 AFNAMLKTLEE---PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA 590 (1342)
Q Consensus 515 ~~~~Ll~~Le~---p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~ 590 (1342)
..+.|+..++. ++..+++|.+||.++.+.+++++|+ ..+.++.|+.++...+++.+++..+..+++..++.|++.+
T Consensus 132 ~~~~ll~~ld~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t 211 (322)
T 1xwi_A 132 IKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKT 211 (322)
T ss_dssp HHHHHHHHHHCSSSCCTTEEEEEEESCTTTSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHhcccccCCCEEEEEecCCcccCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHc
Confidence 45677777765 4577889999999999999999999 7899999999999999999998888888999999999999
Q ss_pred CC-cHHHHHHHHHHHHhh
Q psy13354 591 QG-SMRDALSLTDQAINY 607 (1342)
Q Consensus 591 ~g-~lr~a~~~L~kl~~~ 607 (1342)
.| +.+++.+++..+...
T Consensus 212 ~G~sgadl~~l~~~A~~~ 229 (322)
T 1xwi_A 212 DGYSGADISIIVRDALMQ 229 (322)
T ss_dssp TTCCHHHHHHHHHHHHTH
T ss_pred CCCCHHHHHHHHHHHHHH
Confidence 77 577777777766543
No 244
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.61 E-value=1.5e-14 Score=169.04 Aligned_cols=204 Identities=15% Similarity=0.196 Sum_probs=153.5
Q ss_pred ccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 384 KYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 384 k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
+-...+|+|+.|.+.+++.|.+.+.. -..+.++|||||||||||++|+++|+++++
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~------------ 242 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSA------------ 242 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTC------------
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCC------------
Confidence 34456899999999999999888732 256789999999999999999999999974
Q ss_pred CCCCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH------------
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH------------ 513 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~------------ 513 (1342)
.|+.++++... +...+++++..+... .+-||+|||+|.+..
T Consensus 243 -----------------~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~ 301 (437)
T 4b4t_I 243 -----------------TFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN----APSIVFIDEIDAIGTKRYDSNSGGERE 301 (437)
T ss_dssp -----------------EEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT----CSEEEEEEEESSSSCCCSCSSCSSCCH
T ss_pred -----------------CEEEEEHHHhhhccCchHHHHHHHHHHHHHhc----CCcEEEEehhhhhcccCCCCCCCccHH
Confidence 46666654321 123567777666543 345999999997721
Q ss_pred --HHHHHHHHhhc--CCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HHHH
Q psy13354 514 --HAFNAMLKTLE--EPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETS-ALNL 585 (1342)
Q Consensus 514 --~~~~~Ll~~Le--~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al~~ 585 (1342)
...+.|+..++ +....+++|++||.++.++++|++ |+ ..+.|+.|+.++..++++.++++..+ +++ .++.
T Consensus 302 ~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l--~~dvdl~~ 379 (437)
T 4b4t_I 302 IQRTMLELLNQLDGFDDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL--SEDVNLET 379 (437)
T ss_dssp HHHHHHHHHHHHHHCCCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB--CSCCCHHH
T ss_pred HHHHHHHHHHHhhCcCCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC--CCcCCHHH
Confidence 23456666665 345678999999999999999997 88 68999999999999999888876543 333 4788
Q ss_pred HHHhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 586 IATGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 586 La~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
||+.+.| +-.++.+++..+...+ ...||.+|+.+++.
T Consensus 380 LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~ 421 (437)
T 4b4t_I 380 LVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKE 421 (437)
T ss_dssp HHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHH
T ss_pred HHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 8998865 6777777777765554 23488888887764
No 245
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.61 E-value=1.7e-14 Score=172.23 Aligned_cols=237 Identities=14% Similarity=0.124 Sum_probs=164.4
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCc--EEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHH--AYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~--~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
++..+|.| ++++|++..++.+...+.. +..++ .++|+||+|+|||++++.+++.+.+.. .....+..|.
T Consensus 9 ~l~~~~~p---~~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~---~~~~~~i~~~ 82 (389)
T 1fnn_A 9 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKT---TARFVYINGF 82 (389)
T ss_dssp GGSTTCCC---SCCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSC---CCEEEEEETT
T ss_pred hcCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhc---CeeEEEEeCc
Confidence 56678888 7899999999998888865 44444 799999999999999999999986421 0111223333
Q ss_pred CCcchhhhccCCCccEEEEcc-CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC----Cc
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDA-ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP----KY 529 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~-~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~----~~ 529 (1342)
.+.+...+.......+ .... ........+.+.+...... .+++.+|+|||++.++.+..+.|++++++.+ ..
T Consensus 83 ~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~vlilDE~~~l~~~~~~~L~~~~~~~~~~~~~~ 159 (389)
T 1fnn_A 83 IYRNFTAIIGEIARSL-NIPFPRRGLSRDEFLALLVEHLRE--RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFR 159 (389)
T ss_dssp TCCSHHHHHHHHHHHT-TCCCCSSCCCHHHHHHHHHHHHHH--TTCCEEEEEETGGGSCHHHHHHHHHHTTCHHHHSSCC
T ss_pred cCCCHHHHHHHHHHHh-CccCCCCCCCHHHHHHHHHHHHhh--cCCeEEEEEECccccchHHHHHHHHHHHhCCCCCcCC
Confidence 3322111110000000 0000 0011122222222211111 2446799999999999889999999998754 47
Q ss_pred EEEEEEeCCC---CCChHHHhccEE--EEEEcCCCHHHHHHHHHHHHHhc--CCCcchhHHHHHHHhc---------CCc
Q psy13354 530 IKFILATTEP---QKIPITVLSRCI--QFNLKKMLHHDIVNNLCYILNKE--NIKFETSALNLIATGA---------QGS 593 (1342)
Q Consensus 530 ~vlIl~t~~~---~kl~~~L~sR~~--~i~~~~l~~~el~~~l~~~~~~~--g~~i~~~al~~La~~~---------~g~ 593 (1342)
+.+|++++.+ +.+.+.+.+|+. .+.|++++.+++.+++..++... ...+++++++.+++.+ +||
T Consensus 160 ~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~ 239 (389)
T 1fnn_A 160 IALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 239 (389)
T ss_dssp EEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCC
T ss_pred EEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCc
Confidence 8899999887 567788889984 79999999999999999998762 3478999999999999 899
Q ss_pred HHHHHHHHHHHHhhc----CCCCCHHHHHHHhccCc
Q psy13354 594 MRDALSLTDQAINYS----SEKITLNSMQEMLSIID 625 (1342)
Q Consensus 594 lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~~~ 625 (1342)
+|.+.+.++.+...+ ...|+.++|.+++....
T Consensus 240 ~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~~ 275 (389)
T 1fnn_A 240 ARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVL 275 (389)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHh
Confidence 999999999877654 24599999887765443
No 246
>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3
Probab=99.61 E-value=1.3e-14 Score=177.06 Aligned_cols=164 Identities=20% Similarity=0.191 Sum_probs=122.3
Q ss_pred HHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhh-HHhhhCCceeEEEEecCCCCCC
Q psy13354 74 IEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHG-MMLNMSGKWFNSICYGLNKKEK 152 (1342)
Q Consensus 74 Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~-~~~~~~g~~~~~v~~~~~~~~~ 152 (1342)
..+++++++++++|.+++++++ +|++|+..++. ++++||+|+++...|+++.... ......|. +++.++.+
T Consensus 134 ~~~~l~~~la~~~g~~~~i~~~-sGt~al~~~l~-~~~~Gd~Vi~~~~~y~~~~~~~~~~~~~~G~--~v~~v~~~---- 205 (464)
T 1ibj_A 134 TRDALESLLAKLDKADRAFCFT-SGMAALSAVTH-LIKNGEEIVAGDDVYGGSDRLLSQVVPRSGV--VVKRVNTT---- 205 (464)
T ss_dssp HHHHHHHHHHHHHTCSEEEEES-SHHHHHHHHHT-TSCTTCEEEEESSCCHHHHHHHHHTSGGGTC--EEEEECTT----
T ss_pred HHHHHHHHHHHHhCCCeEEEEC-CHHHHHHHHHH-HhCCCCEEEEECCCchhHHHHHHHHHHHcCC--EEEEeCCC----
Confidence 4566777999999988666666 99999988875 7899999998876665543222 12345566 45555654
Q ss_pred CCHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 153 IDYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 153 id~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
|++++++++++ ++++++++++++| ...++++|+++|++||++||+|++|..|... .+++ .+|++++|+||
T Consensus 206 -d~~~l~~~i~~-~tk~v~l~~p~NptG~v~~l~~i~~la~~~gi~livDea~~~g~~~-----~~~~~~~div~~S~sK 278 (464)
T 1ibj_A 206 -KLDEVAAAIGP-QTKLVWLESPTNPRQQISDIRKISEMAHAQGALVLVDNSIMSPVLS-----RPLELGADIVMHSATK 278 (464)
T ss_dssp -SHHHHHHHCCS-SEEEEEECSSCTTTCCCCCHHHHHHHHHTTTCEEEEECTTTCTTTC-----CGGGTTCSEEEEETTT
T ss_pred -CHHHHHHHhcc-CceEEEEeCCCCCCCEeecHHHHHHHHHHcCCEEEEECCCcccccC-----ChhhcCCEEEEECCcc
Confidence 89999998864 4677777777666 4459999999999999999999999765431 1222 36999999999
Q ss_pred cCCCCCe---eEEEEec-hhHHHHhhc
Q psy13354 230 SLRGPRG---GFILMKK-KYKKIINSA 252 (1342)
Q Consensus 230 ~l~gp~G---G~iv~~~-~l~~~l~~~ 252 (1342)
+++|+.| |++++++ ++++.+...
T Consensus 279 ~~~g~~Gl~~G~l~~~~~~l~~~l~~~ 305 (464)
T 1ibj_A 279 FIAGHSDVMAGVLAVKGEKLAKEVYFL 305 (464)
T ss_dssp TTTCSSCCCCEEEEECSHHHHHHHHHH
T ss_pred cccCCCCCcEEEEEEChHHHHHHHHHH
Confidence 9976655 9999996 777777653
No 247
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.60 E-value=4.1e-15 Score=171.81 Aligned_cols=205 Identities=24% Similarity=0.309 Sum_probs=148.5
Q ss_pred cccccchhhHHHHHHHHHc-------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 391 NTLIGQNHISKSLINALDK-------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~-------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
++++||+.+++.+..++.. +..++.+||+||||||||++|+.+++.+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~----------------- 77 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP----------------- 77 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCC-----------------
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCC-----------------
Confidence 4589999999999888865 3456779999999999999999999998631
Q ss_pred chhhhccCCCccEEEEccCCC--------cCHHHHHHHHHHHhhc-CccCCceEEEeccCccCCHHH------------H
Q psy13354 458 VCVKIDNGCFMDYIEMDAAST--------RGINEMAQLLEQTIYA-PINARYKIYVIDEVHMLTHHA------------F 516 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~--------~~~~~i~~ii~~~~~~-p~~~~~rvviIDE~~~L~~~~------------~ 516 (1342)
++.++++.. .....++++....... .....+.+|+|||++.+..+. +
T Consensus 78 ------------~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~ 145 (310)
T 1ofh_A 78 ------------FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQ 145 (310)
T ss_dssp ------------EEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHH
T ss_pred ------------EEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHH
Confidence 222322211 1112344444322100 001235699999999986443 7
Q ss_pred HHHHHhhcCC----------CCcEEEEEEe----CCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHH-----------H
Q psy13354 517 NAMLKTLEEP----------PKYIKFILAT----TEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCY-----------I 570 (1342)
Q Consensus 517 ~~Ll~~Le~p----------~~~~vlIl~t----~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~-----------~ 570 (1342)
+.|++++++. +..+++|+++ +.+..+.+++.+|+ ..+.|++++.+++..++.+ .
T Consensus 146 ~~Ll~~le~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~ 225 (310)
T 1ofh_A 146 RDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKAL 225 (310)
T ss_dssp HHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH
T ss_pred HHHHHHhcCCeEecccccccCCcEEEEEcCCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHH
Confidence 8899999873 3467777774 35567889999999 6799999999999999883 3
Q ss_pred HHhcC--CCcchhHHHHHHHhc--------CCcHHHHHHHHHHHHhh-----c--CC---CCCHHHHHHHhccC
Q psy13354 571 LNKEN--IKFETSALNLIATGA--------QGSMRDALSLTDQAINY-----S--SE---KITLNSMQEMLSII 624 (1342)
Q Consensus 571 ~~~~g--~~i~~~al~~La~~~--------~g~lr~a~~~L~kl~~~-----~--~~---~It~e~V~~~v~~~ 624 (1342)
+...+ +.+++++++.|++.+ .||+|.+.+.+++++.. . .+ .||.++|++++...
T Consensus 226 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 299 (310)
T 1ofh_A 226 MATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGEV 299 (310)
T ss_dssp HHHTTCEEEECHHHHHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCSS
T ss_pred HHhcCCeeccCHHHHHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHhh
Confidence 33445 369999999999998 89999999999986621 1 12 29999999988754
No 248
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.60 E-value=2.8e-14 Score=160.40 Aligned_cols=208 Identities=18% Similarity=0.263 Sum_probs=155.3
Q ss_pred HhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcc
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGIT 449 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~ 449 (1342)
|..++.+..|++++|++.+++.+.+.+.. ...++.++|+||+|+|||++++++++.+...
T Consensus 2 ~~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~--------- 72 (257)
T 1lv7_A 2 LTEDQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVP--------- 72 (257)
T ss_dssp EEECSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCC---------
T ss_pred CCccCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCC---------
Confidence 45678899999999999999888776532 2456789999999999999999999988531
Q ss_pred cCCCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH----------
Q psy13354 450 SQPCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---------- 513 (1342)
Q Consensus 450 ~~~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---------- 513 (1342)
++.++++. ..+...++.+++.+.. ..+.++++||+|.+..
T Consensus 73 --------------------~~~i~~~~~~~~~~~~~~~~~~~~~~~a~~----~~~~il~iDeid~l~~~~~~~~~~~~ 128 (257)
T 1lv7_A 73 --------------------FFTISGSDFVEMFVGVGASRVRDMFEQAKK----AAPCIIFIDEIDAVGRQRGAGLGGGH 128 (257)
T ss_dssp --------------------EEEECSCSSTTSCCCCCHHHHHHHHHHHHT----TCSEEEEETTHHHHTCCCSTTSCCTT
T ss_pred --------------------EEEEeHHHHHHHhhhhhHHHHHHHHHHHHH----cCCeeehhhhhhhhccCCCCCcCCCc
Confidence 22222221 1223456666666543 2346999999986631
Q ss_pred ----HHHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HH
Q psy13354 514 ----HAFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETS-AL 583 (1342)
Q Consensus 514 ----~~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al 583 (1342)
...+.++..++. .+..+++|.+||.++.+.+++.+ |+ ..+.+..|+.++..++++.++++.. ++++ .+
T Consensus 129 ~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~--l~~~~~~ 206 (257)
T 1lv7_A 129 DEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVP--LAPDIDA 206 (257)
T ss_dssp CHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSC--BCTTCCH
T ss_pred hHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCC--CCccccH
Confidence 345667777764 34578889999999999998887 76 7889999999999999988876654 3333 37
Q ss_pred HHHHHhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 584 NLIATGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 584 ~~La~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
..++..+.| +.|++.+.++++..++ ...|+.+++++++..
T Consensus 207 ~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 207 AIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 788999999 9999999999977665 245999999887743
No 249
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*
Probab=99.60 E-value=2.8e-14 Score=173.08 Aligned_cols=304 Identities=12% Similarity=0.019 Sum_probs=178.2
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc--CCCCEE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL--NPGDTI 116 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~--~pGD~V 116 (1342)
+|.+.+++.+.+.. +. +.... |. . +...++++.++++++.+ +.+++++||++|+..++.++. ..+|+|
T Consensus 61 ~p~v~~a~~~~~~~-~~--~~~~~-~~-~----~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~~~~~~v 131 (433)
T 1zod_A 61 HPEIVSVIGEYAGK-LD--HLFSE-ML-S----RPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVTGKYEI 131 (433)
T ss_dssp CHHHHHHHHHHHHH-CC--CCCTT-CC-C----HHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHHTCCEE
T ss_pred CHHHHHHHHHHHHh-Cc--ccccc-cC-C----HHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhhCCCeE
Confidence 67899999988853 21 11111 11 1 33444556888888754 556666699999999998653 345789
Q ss_pred EEeeccCCccchhhHHhh---------hCCceeEEEEecCC--CC--------CCCCHHHHHHHHHh---cCCeEEEEcC
Q psy13354 117 MGMSLQEGGHLTHGMMLN---------MSGKWFNSICYGLN--KK--------EKIDYKKVEYLAKK---NKPKLIIAGA 174 (1342)
Q Consensus 117 lv~~~~~~~~~s~~~~~~---------~~g~~~~~v~~~~~--~~--------~~id~e~Le~~i~~---~~~~liv~~~ 174 (1342)
++.+..+.+......... ....++..++++.. .. +.+|++++++.+++ .+++++++.+
T Consensus 132 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p 211 (433)
T 1zod_A 132 VGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEP 211 (433)
T ss_dssp EEETTCCCCSSHHHHHTCCSSCCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECS
T ss_pred EEECCCcCCCChhHHhhcCCccccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEcc
Confidence 887765544332211110 00123355544321 11 12469999998875 3456677655
Q ss_pred CCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CCcEEEecCCccCCCCCe-eEEEEec
Q psy13354 175 SAYS-Q-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FADFITSTTHKSLRGPRG-GFILMKK 243 (1342)
Q Consensus 175 s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp~G-G~iv~~~ 243 (1342)
.+++ + ..+ +++|+++|++||++||+||+|+ +|.. +.... ... ..|++ |+||+|+++.. |++++++
T Consensus 212 ~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~--g~~~~~~~~~~~~di~--s~sK~~~~G~~ig~~~~~~ 287 (433)
T 1zod_A 212 ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRT--GTMFACQRDGVTPDIL--TLSKTLGAGLPLAAIVTSA 287 (433)
T ss_dssp EETTTTCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTT--SSSSTHHHHTCCCSEE--EECHHHHTTSSCEEEEECH
T ss_pred ccCCCCcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcC--chHhHHhhcCCCCCEE--EecccccCCCCeeEEEEhH
Confidence 4333 3 234 9999999999999999999997 3322 11110 011 24655 67799943212 9999999
Q ss_pred hhHHHHhhccCC--ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----Cc-EEeeCCCCCeEE
Q psy13354 244 KYKKIINSAVFP--GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GI-RIVSGGTKSHII 316 (1342)
Q Consensus 244 ~l~~~l~~~~~~--~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~-~~~~~~~~~~~v 316 (1342)
++++.+...... ..++ .+...++++.+++ +.+.+ ..+.+++.++++++.+.|.+. +. .... ..+.++
T Consensus 288 ~~~~~~~~~~~~~~~t~~-~~~~~~~a~~aal-~~~~~--~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~--~~g~~~ 361 (433)
T 1zod_A 288 AIEERAHELGYLFYTTHV-SDPLPAAVGLRVL-DVVQR--DGLVARANVMGDRLRRGLLDLMERFDCIGDVR--GRGLLL 361 (433)
T ss_dssp HHHHHHHHTTCCCCCTTT-TCHHHHHHHHHHH-HHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETTEE
T ss_pred HHHHhhccCCCCCCCCCC-cCHHHHHHHHHHH-HHHHh--CCHHHHHHHHHHHHHHHHHHHHHhCCCeEEEE--EEEEEE
Confidence 998888763222 2222 2333444444343 33221 134677778888888888763 32 2222 235677
Q ss_pred EEEccCC--------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 317 LVDLRNK--------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 317 ~i~~~~~--------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
|+.++.. ....++...++ ++||.+.++..++. .+++|++++..++.
T Consensus 362 ~i~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~~~~~~------~~~lRi~~~~~~t~ 415 (433)
T 1zod_A 362 GVEIVKDRRTKEPADGLGAKITRECM-NLGLSMNIVQLPGM------GGVFRIAPPLTVSE 415 (433)
T ss_dssp EEEEEEETTTTEECTTHHHHHHHHHH-HTTEECCEECCTTS------CCEEEECCCTTCCH
T ss_pred EEEEecCccccCCChHHHHHHHHHHH-HCCCeEeccCCCCC------CCEEEEECCcCCCH
Confidence 8877532 11345666666 56999988643321 35799987766553
No 250
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*
Probab=99.60 E-value=2.1e-13 Score=166.77 Aligned_cols=314 Identities=13% Similarity=0.035 Sum_probs=176.5
Q ss_pred ceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.|.+.++ .+.+ +|.+++|+.+.+.. ....+.. ..+. .+...+++++++++++.+ +.+++++||++|+
T Consensus 53 ~lD~~~~~~~~~lG~~~p~v~~A~~~~~~~-~~~~~~~---~~~~---~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~ 125 (460)
T 3gju_A 53 SIDAFAGLYCVNVGYGRQKIADAIATQAKN-LAYYHAY---VGHG---TEASITLAKMIIDRAPKGMSRVYFGLSGSDAN 125 (460)
T ss_dssp EEETTHHHHTCTTCBCCHHHHHHHHHHHHH-HSCCCCC---TTCC---CHHHHHHHHHHHHHSCTTEEEEEEESSHHHHH
T ss_pred EEECCcchhhccCCCCCHHHHHHHHHHHHh-ccccccc---cccC---CHHHHHHHHHHHhhCCCCcCEEEEeCchHHHH
Confidence 3555544 2333 57799999888753 3211221 1111 144555666888887544 4555666999999
Q ss_pred HHHHHHccC--------CCCEEEEeeccCCccchhhHHh----------hhCCceeEEEEecCC---CCCCCC-------
Q psy13354 103 QAVFFSVLN--------PGDTIMGMSLQEGGHLTHGMML----------NMSGKWFNSICYGLN---KKEKID------- 154 (1342)
Q Consensus 103 ~~al~al~~--------pGD~Vlv~~~~~~~~~s~~~~~----------~~~g~~~~~v~~~~~---~~~~id------- 154 (1342)
..+++++.. +++.|++....+.++......+ .....++..++++.. .+..++
T Consensus 126 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~ 205 (460)
T 3gju_A 126 ETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQH 205 (460)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHH
Confidence 999998863 5688888776665543222111 111223455544431 111123
Q ss_pred -HHHHHHHHHh---cCCeEEEEcCCCCCc--ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CC
Q psy13354 155 -YKKVEYLAKK---NKPKLIIAGASAYSQ--YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FA 220 (1342)
Q Consensus 155 -~e~Le~~i~~---~~~~liv~~~s~~~~--~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~ 220 (1342)
++++++++.. .+.++|++.+.++++ ..+ +++|+++|++||++||+||+|. +|.. +.... ..+ ..
T Consensus 206 ~~~~le~~i~~~~~~~~aaii~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~--g~~~~~~~~~~~p 283 (460)
T 3gju_A 206 CADKLEEMILAEGPETIAAFIGEPILGTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRL--GTMFGSDHYGIKP 283 (460)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSCHHHHHTCCC
T ss_pred HHHHHHHHHHhcCCCCEEEEEECCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc--cccchHhhcCCCC
Confidence 6888888874 345677776644431 222 9999999999999999999987 3222 11110 011 24
Q ss_pred cEEEecCCccCCCC--CeeEEEEechhHHHHhhc-------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy13354 221 DFITSTTHKSLRGP--RGGFILMKKKYKKIINSA-------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 221 Divv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~-------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~ 291 (1342)
|+++ +||++++. ..|++++++++++.+... .....++. ++..++++.+.++.+.+ +...+++.++
T Consensus 284 di~t--~sK~l~gG~~~lg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~ 357 (460)
T 3gju_A 284 DLIT--IAKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSA--HPICVAAGVANLELIDE--MDLVTNAGET 357 (460)
T ss_dssp SEEE--ECGGGTTTSSCCEEEEEEHHHHHHHHHHHHHHCSCSCCCTTTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHH
T ss_pred Ceee--eehhhcCCCCCeEEEEECHHHHHHHhcccccccccccCCCCCC--CHHHHHHHHHHHHHHHh--ccHHHHHHHH
Confidence 6664 56999552 339999999999888531 22222322 33444444444443321 1234445555
Q ss_pred HHHHHHHH----HhCC-cEEeeCCCCCeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCCCccc
Q psy13354 292 AKILSKIL----DQRG-IRIVSGGTKSHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPEKPYF 355 (1342)
Q Consensus 292 a~~l~~~L----~~~g-~~~~~~~~~~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~ 355 (1342)
.+++++.| .+.+ +.... ..+.++++.+..... ..++...+++ +||.+.+.. .
T Consensus 358 ~~~~~~~l~~~l~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~-----~---- 425 (460)
T 3gju_A 358 GAYFRAELAKAVGGHKNVGEVR--GDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAA-SGVIGRAMP-----Q---- 425 (460)
T ss_dssp HHHHHHHHHHHHTTSTTEEEEE--EETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHH-TTEECEECS-----S----
T ss_pred HHHHHHHHHHHHhcCCCeEEEe--eeeEEEEEEEccCccccccccchHHHHHHHHHHHHH-CCeEEecCC-----C----
Confidence 55555554 4433 22222 234566776653221 2245555555 599998753 1
Q ss_pred cccccccccccccc
Q psy13354 356 TSGIRLGSSAITTR 369 (1342)
Q Consensus 356 ~~~lRi~~~~~~t~ 369 (1342)
.+++|++++...+.
T Consensus 426 ~~~iRi~~~~~~t~ 439 (460)
T 3gju_A 426 GDILGFAPPLCLTR 439 (460)
T ss_dssp SCEEEECCCTTCCH
T ss_pred CCEEEEECCCCCCH
Confidence 35799987765553
No 251
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.59 E-value=1.1e-14 Score=168.51 Aligned_cols=186 Identities=18% Similarity=0.200 Sum_probs=145.4
Q ss_pred ccccchhhHHHHHHHHHc--------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 392 TLIGQNHISKSLINALDK--------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~--------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
+++|++.+++.+.+.+.. +...+.+||+||||||||++|+.+++.+.+.....
T Consensus 32 ~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~------------- 98 (309)
T 3syl_A 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVR------------- 98 (309)
T ss_dssp HSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSS-------------
T ss_pred HccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcC-------------
Confidence 799999999998877642 45556799999999999999999999997532110
Q ss_pred chhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccC---------CHHHHHHHHHh
Q psy13354 458 VCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHML---------THHAFNAMLKT 522 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~~~~~~~Ll~~ 522 (1342)
...++.++.+.. .....+..++..+ ...+|+|||++.+ +.+.++.|++.
T Consensus 99 ---------~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~-------~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~ 162 (309)
T 3syl_A 99 ---------KGHLVSVTRDDLVGQYIGHTAPKTKEVLKRA-------MGGVLFIDEAYYLYRPDNERDYGQEAIEILLQV 162 (309)
T ss_dssp ---------SCCEEEECGGGTCCSSTTCHHHHHHHHHHHH-------TTSEEEEETGGGSCCCC---CCTHHHHHHHHHH
T ss_pred ---------CCcEEEEcHHHhhhhcccccHHHHHHHHHhc-------CCCEEEEEChhhhccCCCcccccHHHHHHHHHH
Confidence 012333333211 1122345555444 2359999999977 77888999999
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc------
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA------ 590 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~------ 590 (1342)
+++.+.++++|++++... .+.++|++|+ ..+.|++++.+++..++..++++.+..+++++++.+++.+
T Consensus 163 l~~~~~~~~~i~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 242 (309)
T 3syl_A 163 MENNRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQ 242 (309)
T ss_dssp HHHCTTTCEEEEEECHHHHHHHHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTS
T ss_pred HhcCCCCEEEEEeCChHHHHHHHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccC
Confidence 999888898999887543 2347999999 9999999999999999999999999999999999999974
Q ss_pred --CCcHHHHHHHHHHHHh
Q psy13354 591 --QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 591 --~g~lr~a~~~L~kl~~ 606 (1342)
.||+|.+.+.+++++.
T Consensus 243 ~~~gn~r~l~~~l~~a~~ 260 (309)
T 3syl_A 243 PHFANARSIRNALDRARL 260 (309)
T ss_dssp SSCCHHHHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHH
Confidence 4999999999998774
No 252
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.59 E-value=2e-14 Score=170.72 Aligned_cols=205 Identities=16% Similarity=0.175 Sum_probs=152.9
Q ss_pred CCCCccccccchhhHHHHHHHHH------------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALD------------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~------------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
.+.+|+++.|.+.+++.|.+.+. .-..+.++|||||||||||++|+++|+++++
T Consensus 176 p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~-------------- 241 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNA-------------- 241 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------------
T ss_pred CCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCC--------------
Confidence 45589999999999999988752 1256789999999999999999999999974
Q ss_pred CCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------H---
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------H--- 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~--- 513 (1342)
.++.++++... +...++.++..+... .+.||+|||+|.+. .
T Consensus 242 ---------------~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~----aP~IifiDEiDal~~~R~~~~~~~~~~~~ 302 (434)
T 4b4t_M 242 ---------------TFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK----APTIIFIDELDAIGTKRFDSEKSGDREVQ 302 (434)
T ss_dssp ---------------EEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH----CSEEEEEECTHHHHCCCSSGGGGTTHHHH
T ss_pred ---------------CEEEEehhhhhhcccchHHHHHHHHHHHHHhc----CCeEEeecchhhhhhccCCCCCCCchHHH
Confidence 46666654321 223566776655443 24599999999761 1
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.|+..++.. ...+++|.+||.++.+++++++ |+ ..+.|+.|+.++..++++.++++.... ++-.++.||+
T Consensus 303 ~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~ 381 (434)
T 4b4t_M 303 RTMLELLNQLDGFSSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELAR 381 (434)
T ss_dssp HHHHHHHHHHTTSCSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHH
T ss_pred HHHHHHHHHhhccCCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHH
Confidence 1345677777753 3567888999999999999987 88 789999999999999999888876542 1223788899
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
.+.| +-.++.+++..+...+ ...|+.+|+.+++...
T Consensus 382 ~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v 422 (434)
T 4b4t_M 382 STDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEV 422 (434)
T ss_dssp HCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSC
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 8865 7777777777665543 3458988888777543
No 253
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.58 E-value=2.5e-14 Score=163.40 Aligned_cols=205 Identities=16% Similarity=0.220 Sum_probs=149.5
Q ss_pred cCCCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~ 452 (1342)
..+.+|++++|++.+++.|.+.+... ..++.+||+||||||||++|+++++.++.
T Consensus 11 ~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~------------- 77 (285)
T 3h4m_A 11 RPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNA------------- 77 (285)
T ss_dssp SCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTC-------------
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC-------------
Confidence 45668999999999999998887541 55678999999999999999999998863
Q ss_pred CCCCcchhhhccCCCccEEEEccCCC----c--CHHHHHHHHHHHhhcCccCCceEEEeccCccC-----------CHHH
Q psy13354 453 CGKCSVCVKIDNGCFMDYIEMDAAST----R--GINEMAQLLEQTIYAPINARYKIYVIDEVHML-----------THHA 515 (1342)
Q Consensus 453 c~~~~~~~~~~~~~~~d~~~i~~~~~----~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L-----------~~~~ 515 (1342)
.++.++.... . ....++.++..+.. ..+.||+|||++.+ ..+.
T Consensus 78 ----------------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~~ 137 (285)
T 3h4m_A 78 ----------------TFIRVVGSELVKKFIGEGASLVKDIFKLAKE----KAPSIIFIDEIDAIAAKRTDALTGGDREV 137 (285)
T ss_dssp ----------------EEEEEEGGGGCCCSTTHHHHHHHHHHHHHHH----TCSEEEEEETTHHHHBCCSSSCCGGGGHH
T ss_pred ----------------CEEEEehHHHHHhccchHHHHHHHHHHHHHH----cCCeEEEEECHHHhcccCccccCCccHHH
Confidence 2333333211 1 12234455544432 34569999999987 3333
Q ss_pred HHHHHH---hhc--CCCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 516 FNAMLK---TLE--EPPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 516 ~~~Ll~---~Le--~p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
.+.|.. .++ .....+++|+++|.++.+.+++.+ |+ ..+.+++|+.++..++++..++..+.. ++..+..++
T Consensus 138 ~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~ 216 (285)
T 3h4m_A 138 QRTLMQLLAEMDGFDARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIA 216 (285)
T ss_dssp HHHHHHHHHHHHTTCSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHH
T ss_pred HHHHHHHHHHhhCCCCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHH
Confidence 444444 443 344678899999999999999998 88 689999999999999999888776654 334577888
Q ss_pred HhcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 588 TGAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.+.| +.+++.+++..+...+ ...||.+++.+++..
T Consensus 217 ~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 217 KMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 88776 7778888887766554 245999999988743
No 254
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.58 E-value=1.2e-14 Score=176.32 Aligned_cols=196 Identities=14% Similarity=0.163 Sum_probs=151.3
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCc
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGI 448 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~ 448 (1342)
.+..++.+..|++++|++.+++.|.+.+.. ...++++||+||||||||++|+++++.+.+
T Consensus 123 ~i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~--------- 193 (444)
T 2zan_A 123 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANN--------- 193 (444)
T ss_dssp -CBCCCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCS---------
T ss_pred ceeccCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCC---------
Confidence 456678899999999999999999988731 245578999999999999999999998832
Q ss_pred ccCCCCCCcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC----------
Q psy13354 449 TSQPCGKCSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------- 512 (1342)
Q Consensus 449 ~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------- 512 (1342)
..++.++++.. .....++.++..+.. ..+.||+|||+|.+.
T Consensus 194 -------------------~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~----~~~~vl~iDEid~l~~~~~~~~~~~ 250 (444)
T 2zan_A 194 -------------------STFFSISSSDLVSKWLGESEKLVKNLFQLARE----NKPSIIFIDEIDSLCGSRSENESEA 250 (444)
T ss_dssp -------------------SEEEEECCC---------CCCTHHHHHHHHHH----SCSEEEEESCTTTTCCCSSCCCCGG
T ss_pred -------------------CCEEEEeHHHHHhhhcchHHHHHHHHHHHHHH----cCCeEEEEechHhhccCCCCccccH
Confidence 11223322211 011235555555433 345699999999882
Q ss_pred -HHHHHHHHHhhcC---CCCcEEEEEEeCCCCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHH
Q psy13354 513 -HHAFNAMLKTLEE---PPKYIKFILATTEPQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587 (1342)
Q Consensus 513 -~~~~~~Ll~~Le~---p~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La 587 (1342)
....+.|+..++. ++..+++|++||.++.+.+++++|+ ..+.++.|+.++...++..++...+..+++..++.|+
T Consensus 251 ~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la 330 (444)
T 2zan_A 251 ARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELG 330 (444)
T ss_dssp GHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGSCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCCCEEEEecCCCccccCHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 3456788888876 4577889999999999999999999 7899999999999999999998888888999999999
Q ss_pred HhcCC-cHHHHHHHHHHHHhh
Q psy13354 588 TGAQG-SMRDALSLTDQAINY 607 (1342)
Q Consensus 588 ~~~~g-~lr~a~~~L~kl~~~ 607 (1342)
+.+.| +.+++.+++..++..
T Consensus 331 ~~t~G~sgadl~~l~~~a~~~ 351 (444)
T 2zan_A 331 RKTDGYSGADISIIVRDALMQ 351 (444)
T ss_dssp HHTTTCCHHHHHHHHHHHHTH
T ss_pred HHcCCCCHHHHHHHHHHHHHH
Confidence 99988 777888877776543
No 255
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}
Probab=99.57 E-value=1.1e-13 Score=169.49 Aligned_cols=313 Identities=13% Similarity=0.053 Sum_probs=179.6
Q ss_pred ceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.|.+.++ .+.+ +|.+.+|+.+.+.. ....+....+ ..+...+++++++++++.+ +.+++++||++|+
T Consensus 57 ylD~~s~~~~~~lGh~~p~v~~A~~~~~~~-~~~~~~~~~~------~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~ 129 (472)
T 3hmu_A 57 ILDAMAGLWCVNIGYGRDELAEVAARQMRE-LPYYNTFFKT------THVPAIALAQKLAELAPGDLNHVFFAGGGSEAN 129 (472)
T ss_dssp EECTTHHHHTCTTCBCCHHHHHHHHHHHHH-CSCCCSSSSE------ECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHH
T ss_pred EEECCCchhhccCCCCCHHHHHHHHHHHHh-cccccccccc------CCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHH
Confidence 3555554 3333 57799999988853 3211211111 1144455666888888654 4556666999999
Q ss_pred HHHHHHccC--------CCCEEEEeeccCCccchhhHHhhh---------CCceeEEEEecC--C-CCCCCC--------
Q psy13354 103 QAVFFSVLN--------PGDTIMGMSLQEGGHLTHGMMLNM---------SGKWFNSICYGL--N-KKEKID-------- 154 (1342)
Q Consensus 103 ~~al~al~~--------pGD~Vlv~~~~~~~~~s~~~~~~~---------~g~~~~~v~~~~--~-~~~~id-------- 154 (1342)
..+++++.. +++.|++....+.++......+.. ...++..++.+. . .++ .|
T Consensus 130 ~~aik~a~~~~~~~g~~~~~~ii~~~~~yHg~t~~~~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~-~~~~~~~~~~ 208 (472)
T 3hmu_A 130 DTNIRMVRTYWQNKGQPEKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGD-MDPEEFGLAR 208 (472)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCHHHHHTTCCCSSEEEECCCCHHHHCTT-CCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEcCcCCCccHHhhhccCChhhccccCCCCCcEEeCCCccccCCcc-cCHHHHHHHH
Confidence 999998864 467888776666554322211110 111234454333 1 112 34
Q ss_pred HHHHHHHHHh---cCCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CCc
Q psy13354 155 YKKVEYLAKK---NKPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FAD 221 (1342)
Q Consensus 155 ~e~Le~~i~~---~~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~D 221 (1342)
++++++.+.+ .+.++|++.+.+.+ ...+ +++|.++|++||++||+||+|. +|.. +.... ... .+|
T Consensus 209 ~~~le~~i~~~~~~~~aavi~epv~~~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~--G~~~a~~~~~v~pd 286 (472)
T 3hmu_A 209 ARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRT--GNWFGTQTMGIRPH 286 (472)
T ss_dssp HHHHHHHHHHHCGGGEEEEEECSSBSTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSCHHHHHTCCCS
T ss_pred HHHHHHHHHhcCCCCEEEEEEcCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCccc--CccchhHHhCCCCc
Confidence 7888888864 34566776553333 1223 9999999999999999999986 3222 11110 011 257
Q ss_pred EEEecCCccCCCC--CeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHHHHHH
Q psy13354 222 FITSTTHKSLRGP--RGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV-KNAKILSKI 298 (1342)
Q Consensus 222 ivv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~-~~a~~l~~~ 298 (1342)
+++ ++|+++|. +-|++++++++++.+.........+...++..++++.+.++.+.+ +.+.+++. ++.+++++.
T Consensus 287 i~t--~sK~l~gg~~plG~v~~~~~i~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~--~~~~~~~~~~~~~~l~~~ 362 (472)
T 3hmu_A 287 IMT--IAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEE--ENILDHVRNVAAPYLKEK 362 (472)
T ss_dssp EEE--ECGGGTTTSSCCEEEEEEHHHHHHHTTSCBCCCCTTTTCHHHHHHHHHHHHHHHH--TTHHHHHHHTHHHHHHHH
T ss_pred eee--echhhhcCCcceEEEEECHHHHHhcccCCccccCCCCCCHHHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHH
Confidence 775 56999542 239999999999988432112111122234444444454544321 23566777 778888888
Q ss_pred HHhC---C-cEEeeCCCCCeEEEEEccCCCC------------CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccc
Q psy13354 299 LDQR---G-IRIVSGGTKSHIILVDLRNKKI------------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362 (1342)
Q Consensus 299 L~~~---g-~~~~~~~~~~~~v~i~~~~~~~------------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~ 362 (1342)
|+++ + +..+. ..+.++++.+..... ...+...+++ +||++.+.. +++|++
T Consensus 363 L~~l~~~~~v~~vr--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g-----------~~iRi~ 428 (472)
T 3hmu_A 363 WEALTDHPLVGEAK--IVGMMASIALTPNKASRAKFASEPGTIGYICRERCFA-NNLIMRHVG-----------DRMIIS 428 (472)
T ss_dssp HHGGGGSTTEEEEE--EETTEEEEEECSCGGGTCCBSSCTTHHHHHHHHHHHH-TTBCCEEET-----------TEEEEC
T ss_pred HHHHhcCCCeEEEE--ecCceEEEEEecCccccccccchhHHHHHHHHHHHHH-CCcEEEecC-----------CEEEEE
Confidence 8654 2 22222 234566666643210 2345556665 599998751 469998
Q ss_pred ccccccc
Q psy13354 363 SSAITTR 369 (1342)
Q Consensus 363 ~~~~~t~ 369 (1342)
.+...+.
T Consensus 429 p~~~~t~ 435 (472)
T 3hmu_A 429 PPLVITP 435 (472)
T ss_dssp CCTTCCH
T ss_pred CCCCCCH
Confidence 7665553
No 256
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Probab=99.57 E-value=1.6e-13 Score=167.79 Aligned_cols=311 Identities=15% Similarity=0.062 Sum_probs=176.8
Q ss_pred ceeeeec--CCCC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIAS--ENYT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~--~n~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.|.+.++ .+.+ +|.+.+|+.+.+.. ....+.... ... +...+++++++++++.+ +.+++++||++|+
T Consensus 52 ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~-~~~~~~~~~--~~~----~~~~~la~~l~~~~~~~~~~v~~~~ggseA~ 124 (459)
T 4a6r_A 52 IIDGMAGLWCVNVGYGRKDFAEAARRQMEE-LPFYNTFFK--TTH----PAVVELSSLLAEVTPAGFDRVFYTNSGSESV 124 (459)
T ss_dssp EEETTHHHHTCTTCBCCHHHHHHHHHHHHH-CSCCCTTSS--SCC----HHHHHHHHHHHHHSCTTCCEEEEESSHHHHH
T ss_pred EEECCCchhcccCCCCCHHHHHHHHHHHHh-ccccccccc--cCC----HHHHHHHHHHHHhCCCCCCEEEEeCchHHHH
Confidence 3555554 3333 57799999988853 221222111 112 44555666899988654 4566666999999
Q ss_pred HHHHHHccC--------CCCEEEEeeccCCccchhhHHhh----------hCCceeEEEEecCC---CCCCCC-------
Q psy13354 103 QAVFFSVLN--------PGDTIMGMSLQEGGHLTHGMMLN----------MSGKWFNSICYGLN---KKEKID------- 154 (1342)
Q Consensus 103 ~~al~al~~--------pGD~Vlv~~~~~~~~~s~~~~~~----------~~g~~~~~v~~~~~---~~~~id------- 154 (1342)
..+++++.. +++.|++....+.++......+. ....++..++++.. .++ +|
T Consensus 125 ~~al~~~~~~~~~~g~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~-~d~~~~~~~ 203 (459)
T 4a6r_A 125 DTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKD-MTPDEFGVV 203 (459)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTT-CCHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEECCCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcc-cCHHHHHHH
Confidence 999999865 57889987766655443222211 11123344544331 112 34
Q ss_pred -HHHHHHHHHh---cCCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CC
Q psy13354 155 -YKKVEYLAKK---NKPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FA 220 (1342)
Q Consensus 155 -~e~Le~~i~~---~~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~ 220 (1342)
++++++.+.+ .++++|++.+.+++ ...+ +++|.++|++||++||+||+|. +|.. +.+.. ... ..
T Consensus 204 ~~~~le~~i~~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~--G~~~~~~~~~~~p 281 (459)
T 4a6r_A 204 AARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRT--GEWFGHQHFGFQP 281 (459)
T ss_dssp HHHHHHHHHHHHCGGGEEEEEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSSHHHHHTCCC
T ss_pred HHHHHHHHHHHcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcc--cccchHhhcCCCC
Confidence 7888888874 34566666553333 1233 9999999999999999999986 2221 21110 011 24
Q ss_pred cEEEecCCccCCCC--CeeEEEEechhHHHHhhc---cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHH-HHHHH
Q psy13354 221 DFITSTTHKSLRGP--RGGFILMKKKYKKIINSA---VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV-KNAKI 294 (1342)
Q Consensus 221 Divv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~---~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~-~~a~~ 294 (1342)
|+++ +||+++++ .-|++++++++++.+... ...+.++. ++..++++.+.++...+ +.+.+++. ++.++
T Consensus 282 di~t--~sK~l~gg~~~lg~v~~~~~i~~~~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~ 355 (459)
T 4a6r_A 282 DLFT--AAKGLSSGYLPIGAVFVGKRVAEGLIAGGDFNHGFTYSG--HPVCAAVAHANVAALRD--EGIVQRVKDDIGPY 355 (459)
T ss_dssp SEEE--ECGGGGTTSSCCEEEEECHHHHHHHHHHCTTHHHHHHCS--CHHHHHHHHHHHHHHHH--TCHHHHHHHTHHHH
T ss_pred Ceee--hhhhhcCCCCCccceeeCHHHHHHhhcCCCcccCCCCCC--CHHHHHHHHHHHHHHhc--chHHHHHHHHHHHH
Confidence 7764 56999542 229999999999888732 11222332 23344444444443321 12345555 55566
Q ss_pred HHHHH----HhCC-cEEeeCCCCCeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCCCcccccc
Q psy13354 295 LSKIL----DQRG-IRIVSGGTKSHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPEKPYFTSG 358 (1342)
Q Consensus 295 l~~~L----~~~g-~~~~~~~~~~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~ 358 (1342)
+++.| .+.+ +.... ..+.++++.+..... ..++...+++ +||.+.+.. ++
T Consensus 356 ~~~~l~~~l~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g-----------~~ 421 (459)
T 4a6r_A 356 MQKRWRETFSRFEHVDDVR--GVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFR-NNLIMRACG-----------DH 421 (459)
T ss_dssp HHHHHHHHHTTCTTEEEEE--EETTEEEEEECSBTTTTBCCSSTTHHHHHHHHHHHH-TTEECEEET-----------TE
T ss_pred HHHHHHHHHhcCCCeEEEE--EEEEEEEEEEecCccccccccchHHHHHHHHHHHHH-CCeEEecCC-----------CE
Confidence 66655 3333 22222 234566666653211 2345555665 599998751 46
Q ss_pred ccccccccccc
Q psy13354 359 IRLGSSAITTR 369 (1342)
Q Consensus 359 lRi~~~~~~t~ 369 (1342)
+|++++...+.
T Consensus 422 iRi~~~~~~t~ 432 (459)
T 4a6r_A 422 IVSAPPLVMTR 432 (459)
T ss_dssp EEECCCTTCCH
T ss_pred EEEECCCCCCH
Confidence 99987766554
No 257
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Probab=99.57 E-value=3.6e-14 Score=173.18 Aligned_cols=304 Identities=13% Similarity=0.063 Sum_probs=169.5
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHcc--CCCCE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVL--NPGDT 115 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~--~pGD~ 115 (1342)
+|.+.+|+.+.+.. .. .+.... +. .+...+++++++++++.+ +.+++++||++|+..+++.+. ..++.
T Consensus 82 ~p~v~~A~~~~~~~-~~-~~~~~~--~~----~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~~g~~~ 153 (453)
T 4ffc_A 82 HPAVAAAIADQATH-FT-HTCFMV--TP----YEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLATGRPA 153 (453)
T ss_dssp CHHHHHHHHHHHHH-CS-CCTTTT--SC----CHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHCCCE
T ss_pred CHHHHHHHHHHHHh-cc-ccccCc--CC----CHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHhcCCCE
Confidence 67799999888853 21 111111 11 244555667899988743 456666699999999997764 24578
Q ss_pred EEEeeccCCccchhhHHhh-----------hCCceeEEEEecCC--CCCCCC--------HHHHHHHHHhcCCeEEEEcC
Q psy13354 116 IMGMSLQEGGHLTHGMMLN-----------MSGKWFNSICYGLN--KKEKID--------YKKVEYLAKKNKPKLIIAGA 174 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~-----------~~g~~~~~v~~~~~--~~~~id--------~e~Le~~i~~~~~~liv~~~ 174 (1342)
|++....+.++......+. ....++..++++.. +.+.++ ++.+++.+...++++|++.+
T Consensus 154 ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~~~~~aavi~ep 233 (453)
T 4ffc_A 154 VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEP 233 (453)
T ss_dssp EEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECS
T ss_pred EEEEcCccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcCCCCEEEEEEcC
Confidence 8877766655443222211 01113345544421 111122 34555555444556677655
Q ss_pred CCCC--ccc----CHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCCC-CeeEEEEech
Q psy13354 175 SAYS--QYI----DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRGP-RGGFILMKKK 244 (1342)
Q Consensus 175 s~~~--~~~----~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~ 244 (1342)
.+.. ... .+++|+++|++||++||+||+|... ...+.... ... ..|++ +++|+++++ ..|+++++++
T Consensus 234 ~~~~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~-g~~g~~~a~~~~~~~pdi~--t~sK~~~~G~~~G~~~~~~~ 310 (453)
T 4ffc_A 234 IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGF-ARTGAWFASEHEGIVPDIV--TMAKGIAGGMPLSAVTGRAE 310 (453)
T ss_dssp SBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTT-TTTSSSSTHHHHTCCCSEE--EECGGGGTTSSCEEEEEEHH
T ss_pred CCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCC-CcccccchhhhcCCCcchH--hhhhhhcCCcCeEEEEECHH
Confidence 3332 122 3999999999999999999998621 11111110 011 24665 466999432 2299999999
Q ss_pred hHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CC-cEEeeCCCCCeEEEEE
Q psy13354 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RG-IRIVSGGTKSHIILVD 319 (1342)
Q Consensus 245 l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g-~~~~~~~~~~~~v~i~ 319 (1342)
+++.+........+++ ++...+++.+..+...+ +.+.+++.++.+++++.|.+ .+ +.... ..+.++++.
T Consensus 311 i~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~--~~g~~~~~~ 384 (453)
T 4ffc_A 311 LMDAVYAGGLGGTYGG--NPVTCAAAVAALGVMRE--LDLPARARAIEASVTSRLSALAEEVDIIGEVR--GRGAMLAIE 384 (453)
T ss_dssp HHTTSCTTSSCCSSSS--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCSSEEEEE--EETTEEEEE
T ss_pred HHhhhcccCcCCCCCc--CHHHHHHHHHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE--eeceEEEEE
Confidence 8888765444333333 33333334444443321 23455666666666666654 23 22222 235577777
Q ss_pred ccCC-------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 320 LRNK-------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 320 ~~~~-------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+... ....++...+++ +||.+.+...+ .+.+|++++..++.
T Consensus 385 ~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~--------~~~iRi~~~~~~t~ 432 (453)
T 4ffc_A 385 IVKPGTLEPDAALTKSIAAEALS-QGVLILTCGTF--------GNVIRLLPPLVIGD 432 (453)
T ss_dssp EBCTTSCCBCHHHHHHHHHHHHH-TTEECCEECTT--------SCEEEECCCTTCCH
T ss_pred EecCcccCCCHHHHHHHHHHHHh-CCCEEecCCCC--------CCEEEEECCCCCCH
Confidence 6431 112345555555 59999875221 24689987766553
No 258
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=4.5e-14 Score=167.79 Aligned_cols=203 Identities=14% Similarity=0.176 Sum_probs=151.8
Q ss_pred CCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+|+.|.+.+++.|.+.+.. -..+.++|||||||||||++|+++|+++++
T Consensus 176 p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~-------------- 241 (437)
T 4b4t_L 176 GEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGA-------------- 241 (437)
T ss_dssp CSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTC--------------
T ss_pred CCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCC--------------
Confidence 345799999999999999888742 256789999999999999999999999974
Q ss_pred CCCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------------H
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------------H 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------------~ 513 (1342)
.++.++++... +...++.++..+... .+-||+|||+|.+. .
T Consensus 242 ---------------~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~----~P~IifiDEiDai~~~R~~~~~~~~~~~~ 302 (437)
T 4b4t_L 242 ---------------NFIFSPASGIVDKYIGESARIIREMFAYAKEH----EPCIIFMDEVDAIGGRRFSEGTSADREIQ 302 (437)
T ss_dssp ---------------EEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS----CSEEEEEECCCSSSCCCSSSCCSSTTHHH
T ss_pred ---------------CEEEEehhhhccccchHHHHHHHHHHHHHHhc----CCceeeeecccccccccccCCCCcchHHH
Confidence 46666654321 123466666665443 35699999999772 1
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhcc--E-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLSR--C-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~sR--~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
...+.||..++.. ...+++|++||.++.++++|+++ + ..+.|+.|+.++..++++.++++.... ++..++.|++
T Consensus 303 ~~l~~lL~~lDg~~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~ 381 (437)
T 4b4t_L 303 RTLMELLTQMDGFDNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVK 381 (437)
T ss_dssp HHHHHHHHHHHSSSCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHH
T ss_pred HHHHHHHHHhhcccCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHH
Confidence 1356778877643 35688999999999999999875 5 789999999999999999888765542 2334788999
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.| +-.++.+++..+..++ ...|+.+|+.+++.
T Consensus 382 ~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~ 420 (437)
T 4b4t_L 382 MSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVR 420 (437)
T ss_dssp TCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred hCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 8866 6777777777665544 23488888877663
No 259
>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*
Probab=99.57 E-value=6.7e-14 Score=170.09 Aligned_cols=279 Identities=11% Similarity=0.077 Sum_probs=169.7
Q ss_pred cchHHHHHHHHHHHHHHHhCCCCc-eEecCCHHHHHHHHHHHc-cCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEE
Q psy13354 68 CKFIDLIEKIAINRLKKIFNAEAA-NVQPHSGSQANQAVFFSV-LNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSIC 144 (1342)
Q Consensus 68 ~~~~~~Le~~~~~~la~~~g~~~~-vi~~~sGs~A~~~al~al-~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~ 144 (1342)
..+..++..++++++++++|.+.. ++++.+|+.++++++.++ +.+||+|+++...|+++...+. .....|.. ++.
T Consensus 103 ~~g~~~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~~~~gd~Viv~~~~h~s~~~~~~~~a~~~G~~--v~~ 180 (438)
T 1wyu_A 103 SQGVLQATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRETGRMGVLVSQGVHPEYRAVLRAYLEAVGAK--LLT 180 (438)
T ss_dssp CHHHHHHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHHTCCEEEEETTSCHHHHHHHHHHHHHTTCE--EEE
T ss_pred hhhHHHHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHhcCCCCEEEEcCccCHhHHHHHHHHHHHCCCE--EEE
Confidence 445567778888899999998833 344436775545554443 5799999988766655443332 23446774 444
Q ss_pred ecCCCCCCCCHHHHHHHHHhcCCeEEEEcCCCCC-cccCHHHHHHHHHHcCCEEEEEcc-cchhhhhcCCCCCCCC-CCc
Q psy13354 145 YGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYS-QYIDFERFYHIAKNINSYFMVDMA-HYAGLIAAGEYPNPVP-FAD 221 (1342)
Q Consensus 145 ~~~~~~~~id~e~Le~~i~~~~~~liv~~~s~~~-~~~~l~~I~~la~~~gi~LIvDea-~~~g~~~~~~~~~~l~-~~D 221 (1342)
++. +++.+|+++ +++ ++++|+++.+|+. ...|+++|+++|+++|+++++|.. ++.|.+. .+.. .+|
T Consensus 181 v~~-~~~~~d~~~----i~~-~t~~v~i~~pn~tG~~~~l~~i~~la~~~g~~vivd~d~~a~g~~~-----~~~~~g~D 249 (438)
T 1wyu_A 181 LPL-EGGRTPLPE----VGE-EVGAVVVQNPNFLGALEDLGPFAEAAHGAGALFVAVADPLSLGVLK-----PPGAYGAD 249 (438)
T ss_dssp ECC-BTTBCCCCC----CCT-TEEEEEEESSCTTSBCCCHHHHHHHHHHTTCEEEEECCTTGGGTBC-----CHHHHTCS
T ss_pred EcC-cCCccCHHH----hCC-CeEEEEEECCCCCeEEecHHHHHHHHHHcCCEEEEEechhhccCcC-----CCccCCCC
Confidence 454 456778766 443 4566665555444 445999999999999999997754 4444331 1111 369
Q ss_pred EEEecCCc-----cCCCCCeeEEEEechhHHHHhhccCC-----------------------ccccCCcH---HHHHHHH
Q psy13354 222 FITSTTHK-----SLRGPRGGFILMKKKYKKIINSAVFP-----------------------GIQGGPLM---HVIAAKA 270 (1342)
Q Consensus 222 ivv~S~sK-----~l~gp~GG~iv~~~~l~~~l~~~~~~-----------------------~~~~~~~~---~~~~Aaa 270 (1342)
++++|.+| |++||.+|++++++++.+.+...... ...++++. ...+++.
T Consensus 250 ~~~~s~kk~~~~~~~~Gp~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~r~~~~t~~~~~~~~~~a~~ 329 (438)
T 1wyu_A 250 IAVGDGQSLGLPMGFGGPHFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKSNITTNAQLTALM 329 (438)
T ss_dssp EEEEECTTTTCCCGGGCSCCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSCCCCSCCHHHHHH
T ss_pred EEEECCcccCCCccCCCCCeeEEEEcHHHHHhCCCceeccccccCCCcceeeeccccccccchhcccCCccchHHHHHHH
Confidence 99999555 56677449999999876654211000 00111111 1222222
Q ss_pred HH--HHHhccchHHHHHHHHHHHHHHHHHHHHhC-CcEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCcee--eecc
Q psy13354 271 VA--FKEVLKPDFKIYQKQVVKNAKILSKILDQR-GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIIC--NKNS 345 (1342)
Q Consensus 271 ~a--l~~~l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v--~~~~ 345 (1342)
++ +.....++++++.+++.++++++.+.|.+. |+++..+....+.+.+..+ ....++...+++ +||.+ .+..
T Consensus 330 aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~--~~~~~~~~~L~~-~gi~v~~~~~~ 406 (438)
T 1wyu_A 330 GAMYLAALGPEGLREVALKSVEMAHKLHALLLEVPGVRPFTPKPFFNEFALALP--KDPEAVRRALAE-RGFHGATPVPR 406 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCEECSCSSBCSEEEEECS--SCHHHHHHHHHH-TTCCCCEECCT
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCCeEECCCCCeEEEEEEeCC--CCHHHHHHHHHH-CCceecccccc
Confidence 22 333333467788899999999999999997 8988542211223334433 234466666665 59998 4332
Q ss_pred CCCCCCCccccccccccccccccc
Q psy13354 346 IPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 346 ~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
.+. .+++|++++..++.
T Consensus 407 ~~~-------~~~lRis~~~~~t~ 423 (438)
T 1wyu_A 407 EYG-------ENLALFAATELHEE 423 (438)
T ss_dssp TSC-------SSEEEEECCTTCCH
T ss_pred ccC-------CCeEEEEecccCCH
Confidence 211 35799999976654
No 260
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.57 E-value=5.2e-14 Score=166.24 Aligned_cols=202 Identities=16% Similarity=0.200 Sum_probs=150.8
Q ss_pred CCCccccccchhhHHHHHHHHHc-----------C-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDK-----------K-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~-----------~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+|+.|.+.+++.|++.+.. | ..+.++|||||||||||++|+++|+++++
T Consensus 205 ~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~--------------- 269 (467)
T 4b4t_H 205 DVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDA--------------- 269 (467)
T ss_dssp SCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTC---------------
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCC---------------
Confidence 35899999999999999887631 3 57789999999999999999999999974
Q ss_pred CCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------H
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------H 514 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~ 514 (1342)
.|+.++++... +...+++++..+... .+-||+|||+|.+.. .
T Consensus 270 --------------~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~----aP~IIfiDEiDai~~~R~~~~~~~~~~~~~ 331 (467)
T 4b4t_H 270 --------------TFIRVIGSELVQKYVGEGARMVRELFEMARTK----KACIIFFDEIDAVGGARFDDGAGGDNEVQR 331 (467)
T ss_dssp --------------EEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT----CSEEEEEECCTTTSBCCSSSSCGGGGHHHH
T ss_pred --------------CeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc----CCceEeecccccccccccCcCCCccHHHHH
Confidence 46666554221 224577777766543 345999999997731 1
Q ss_pred HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 515 AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 515 ~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
..+.|+..++. ....+++|++||.++.+++++++ |+ ..+.|+.|+.++..++++.++++..+. ++..++.|++.
T Consensus 332 ~l~~lL~~lDg~~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~ 410 (467)
T 4b4t_H 332 TMLELITQLDGFDPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRL 410 (467)
T ss_dssp HHHHHHHHHHSSCCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHH
T ss_pred HHHHHHHHhhccCCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHH
Confidence 34566666653 34578899999999999999987 88 899999999999999998888765443 12247888998
Q ss_pred cCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 590 AQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
+.| +-.++.+++..+...+ ...||.+|+.+++.
T Consensus 411 T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~ 448 (467)
T 4b4t_H 411 CPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVD 448 (467)
T ss_dssp CCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 865 6677777777665543 23488888776663
No 261
>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}
Probab=99.56 E-value=1.6e-13 Score=164.49 Aligned_cols=325 Identities=11% Similarity=0.022 Sum_probs=192.0
Q ss_pred HHHHHHHHHHHhccCceeeeec-------CCCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh
Q psy13354 14 KIWEIILKEKQRQNNNIELIAS-------ENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF 86 (1342)
Q Consensus 14 ~~~~~~~~~~~~~~~~i~l~a~-------~n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~ 86 (1342)
.+.+.........+.+++|..| ..+..|.|.+|....+.+.. ...|.+..+..++.+++.+.+....
T Consensus 31 ~i~~l~~~~~~d~~~kinLgvG~y~d~~g~~~vl~~Vk~A~~~~~~~~~------~~~Y~p~~G~p~lr~aia~~~~g~~ 104 (420)
T 4h51_A 31 VIFDLAKRAAAAKGPKANLVIGAYRDEQGRPYPLRVVRKAEQLLLDMNL------DYEYLPISGYQPFIDEAVKIIYGNT 104 (420)
T ss_dssp HHHHHHHHHHHCCSSCEECCSCCCBCTTSCBCCCHHHHHHHHHHHHTTC------CCCCCCTTCCHHHHHHHHHHHHC--
T ss_pred hHHHHHHHHhcCCCCCEEeecCcccCCCCCCCCCHHHHHHHHHHhcCCC------CCCCCCcCChHHHHHHHHHHhcCCC
Confidence 3444443333333456888766 23445668888655553222 2235666677789887766542211
Q ss_pred CCC-C-ceEecCCHHHHHHHHHHH----ccCCCCEEEEeeccCCccchhhHHhhhCCce-eEEEEecCCCCCCCCHHHHH
Q psy13354 87 NAE-A-ANVQPHSGSQANQAVFFS----VLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW-FNSICYGLNKKEKIDYKKVE 159 (1342)
Q Consensus 87 g~~-~-~vi~~~sGs~A~~~al~a----l~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~-~~~v~~~~~~~~~id~e~Le 159 (1342)
... . ..+.+.+||.|+..++.. +.+|||+|+++++.++.| ...+...|.. +...++..++++.+|.+.+.
T Consensus 105 ~~~~~~~~~qt~ggtga~~~a~~~l~~~~~~pgd~V~ip~P~w~~y---~~i~~~aG~~~V~~~~~~~~~~~~~d~~~~~ 181 (420)
T 4h51_A 105 VELENLVAVQTLSGTGAVSLGAKLLTRVFDAETTPIYLSDPTWPNH---YGVVKAAGWKNICTYAYYDPKTVSLNFEGMK 181 (420)
T ss_dssp -CGGGEEEEEEEHHHHHHHHHHHHHTTTSCTTTSCEEEEESCCTHH---HHHHHHTTCCCEEEEECEEGGGTEECHHHHH
T ss_pred ccccccceeeecCchHHHHHHHHHHHHhcCCCCCEEEEecCCchhH---HHHHHHcCCeEEEeeccccccccCCCHHHHH
Confidence 111 1 223244888877666544 457999999888666544 4455666653 33333333356678999888
Q ss_pred HHHHhcC--CeEEEEcCCCCC-----cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC-C------CCCCcEEEe
Q psy13354 160 YLAKKNK--PKLIIAGASAYS-----QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN-P------VPFADFITS 225 (1342)
Q Consensus 160 ~~i~~~~--~~liv~~~s~~~-----~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~-~------l~~~Divv~ 225 (1342)
+.+...+ ..+++.+.++|| +...+++|+++|+++++++++|++|....++...... . ....-+++.
T Consensus 182 ~~l~~~~~~~~vll~~~p~NPtG~~~~~~~~~~i~~~~~~~~~~~~~D~~Y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 261 (420)
T 4h51_A 182 KDILAAPDGSVFILHQCAHNPTGVDPSQEQWNEIASLMLAKHHQVFFDSAYQGYASGSLDTDAYAARLFARRGIEVLLAQ 261 (420)
T ss_dssp HHHHHSCSSCEEEEESSSCTTTCCCCCHHHHHHHHHHHHHHTCEEEEEESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEE
T ss_pred HHHhccCCCcEEEEeCCCCCCCCCCCCHHHHHHHHHHHHhcCceEeeehhhhhhccCCcccchHHHHhHHhhCceEEEEe
Confidence 8776543 345555556666 3337999999999999999999998643332110000 0 011247889
Q ss_pred cCCccCCCCCe---eEEEEechhHHHHhhc------cCCccccCCcHHHHHHHHHHHHH-----hccchHHHHHHHHHHH
Q psy13354 226 TTHKSLRGPRG---GFILMKKKYKKIINSA------VFPGIQGGPLMHVIAAKAVAFKE-----VLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 226 S~sK~l~gp~G---G~iv~~~~l~~~l~~~------~~~~~~~~~~~~~~~Aaa~al~~-----~l~~~~~~~~~~l~~~ 291 (1342)
||||+| +++| ||++++....+..... .....+++++...+.+++..+.+ .....++.+++++.++
T Consensus 262 s~SK~~-~~~G~RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~~~~~~l~d~~l~~~~~~~~~~m~~r~~~~ 340 (420)
T 4h51_A 262 SFSKNM-GLYSERAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGARLAHLILSNNELRKEWEAELSAMAERIRTM 340 (420)
T ss_dssp ECTTTS-CCGGGCEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccc-ccccCceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999 8888 9999876544332210 11223344445555444433321 1223566788899999
Q ss_pred HHHHHHHHHhCCcEEee---CCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 292 AKILSKILDQRGIRIVS---GGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 292 a~~l~~~L~~~g~~~~~---~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
++.+.+.|++.|..... .+..+.|.|+. .+.+.++ +|+++||++.+. -|++++..++
T Consensus 341 R~~l~~~L~~~g~~~~~~~i~~q~GmF~~~g-----ls~e~v~-~L~e~~Vy~~~~--------------gRis~Agl~~ 400 (420)
T 4h51_A 341 RRTVYDELLRLQTPGSWEHVINQIGMFSFLG-----LSKAQCE-YCQNHNIFITVS--------------GRANMAGLTH 400 (420)
T ss_dssp HHHHHHHHHHTTCSSCCTHHHHCCSSEEECC-----CCHHHHH-HHHHTTEECCTT--------------CEEEGGGCCH
T ss_pred HHHHHHHHHHhCCCCCCCeecCCCceEEecC-----cCHHHHH-HHHhCCEEEcCC--------------CEEEeccCCH
Confidence 99999999987633110 12446666643 3445554 556789987631 2888876544
No 262
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}
Probab=99.56 E-value=2.4e-13 Score=166.79 Aligned_cols=311 Identities=14% Similarity=0.042 Sum_probs=181.6
Q ss_pred ceeeeec--CCC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHH
Q psy13354 29 NIELIAS--ENY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~--~n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~ 102 (1342)
.|.+.++ .+. .+|.+.+|+.+.+. .+..++.. .... +...+++++++++++.+ +.+++++||++|+
T Consensus 56 ylD~~s~~~~~~lGh~~p~v~~A~~~~l~-~~~~~~~~---~~~~----~~~~~la~~l~~~~~~~~~~v~~~~sGseA~ 127 (476)
T 3i5t_A 56 LIDGPAGMWCAQVGYGRREIVDAMAHQAM-VLPYASPW---YMAT----SPAARLAEKIATLTPGDLNRIFFTTGGSTAV 127 (476)
T ss_dssp EEETTHHHHTCTTCBCCHHHHHHHHHHHH-HCCCCCTT---TCBC----HHHHHHHHHHHTTSSTTCCEEEEESSHHHHH
T ss_pred EEECCCchhhccCCCCCHHHHHHHHHHHH-hccCcccC---ccCC----HHHHHHHHHHHhcCCCCcCEEEEeCchHHHH
Confidence 4555444 233 36789999998885 33222221 1112 44555666999988643 4556666999999
Q ss_pred HHHHHHccC--------CCCEEEEeeccCCccchhhHHhh----------hCCceeEEEEecCCCC-CCCC--------H
Q psy13354 103 QAVFFSVLN--------PGDTIMGMSLQEGGHLTHGMMLN----------MSGKWFNSICYGLNKK-EKID--------Y 155 (1342)
Q Consensus 103 ~~al~al~~--------pGD~Vlv~~~~~~~~~s~~~~~~----------~~g~~~~~v~~~~~~~-~~id--------~ 155 (1342)
..+++++.. .++.|++....+.++......+. ....++..++.+.... +..| +
T Consensus 128 ~~Aik~a~~~~~~~g~~~~~~vi~~~~~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~ 207 (476)
T 3i5t_A 128 DSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLV 207 (476)
T ss_dssp HHHHHHHHHHHHHTTCTTCCEEEEETTCCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCCEEEEEcCCcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHH
Confidence 999998853 35688877766655432221110 0112234444333211 1112 7
Q ss_pred HHHHHHHHh---cCCeEEEEcCCCCC-c-cc----CHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCC--C-CCC-CCc
Q psy13354 156 KKVEYLAKK---NKPKLIIAGASAYS-Q-YI----DFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYP--N-PVP-FAD 221 (1342)
Q Consensus 156 e~Le~~i~~---~~~~liv~~~s~~~-~-~~----~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~--~-~l~-~~D 221 (1342)
+++++.+.+ .+.++|++.+.+.+ + .. .+++|+++|++||++||+||+|. +|.. +... . ... .+|
T Consensus 208 ~~le~~i~~~~~~~~aavi~ep~~~~~G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~--G~~~~~~~~~~v~pd 285 (476)
T 3i5t_A 208 QEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRC--GEWFASEKVFGVVPD 285 (476)
T ss_dssp HHHHHHHHHHCGGGEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSCHHHHTTCCCCS
T ss_pred HHHHHHHHhcCCCCEEEEEECCccCCCCcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccc--cCceeeecccCCCcc
Confidence 888888874 34567777654433 1 22 39999999999999999999986 2222 2111 0 111 257
Q ss_pred EEEecCCccCCCC--CeeEEEEechhHHHHhhc-------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHH
Q psy13354 222 FITSTTHKSLRGP--RGGFILMKKKYKKIINSA-------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNA 292 (1342)
Q Consensus 222 ivv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~-------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a 292 (1342)
+++ ++|+++++ +-|++++++++++.+... ...+.+++ ++..++++.+.++.+.+ +.+.+++.++.
T Consensus 286 i~t--~sK~l~~G~~plg~v~~~~~i~~~~~~~~~~~~~~~~~~t~~~--np~a~aAa~aaL~~~~~--~~~~~~~~~~~ 359 (476)
T 3i5t_A 286 IIT--FAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSN--QPVACAAALANIELMER--EGIVDQAREMA 359 (476)
T ss_dssp EEE--ECGGGGTTSSCCEEEEECHHHHHTTSGGGCTTCEECCCCTTTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHHH
T ss_pred hhh--hhhhhcCCCcCeEEEEECHHHHHHHhcCCcccccccccCCCCc--CHHHHHHHHHHHHHHHh--HHHHHHHHHHH
Confidence 775 56999552 228999999998888653 22223332 34444455555554321 34567788888
Q ss_pred HHHHHHHHhCC----cEEeeCCCCCeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCCCccccc
Q psy13354 293 KILSKILDQRG----IRIVSGGTKSHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPEKPYFTS 357 (1342)
Q Consensus 293 ~~l~~~L~~~g----~~~~~~~~~~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~ 357 (1342)
+++.+.|.+++ +..+. ..+.++++.+..... ...+...+++ +||++.+. .+
T Consensus 360 ~~l~~~L~~l~~~~~v~~v~--~~G~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~-----------g~ 425 (476)
T 3i5t_A 360 DYFAAALASLRDLPGVAETR--SVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFE-LGLIVRPL-----------GD 425 (476)
T ss_dssp HHHHHHHHTTTTSTTEEEEE--EETTEEEEEECCC-----CCHHHHHHHHHHHHHHHH-TTEECEEE-----------TT
T ss_pred HHHHHHHHHHhcCCCeEEEE--ecCceeEEEEecCccccccccchhHHHHHHHHHHHH-CCCEEEec-----------CC
Confidence 88888887642 22222 234466777654321 2345555665 59999863 14
Q ss_pred cccccccccccc
Q psy13354 358 GIRLGSSAITTR 369 (1342)
Q Consensus 358 ~lRi~~~~~~t~ 369 (1342)
++|++.+...+.
T Consensus 426 ~iRi~p~l~~t~ 437 (476)
T 3i5t_A 426 LCVISPPLIISR 437 (476)
T ss_dssp EEEECCCTTCCH
T ss_pred EEEEECCCCCCH
Confidence 699986665553
No 263
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.56 E-value=2.6e-14 Score=172.87 Aligned_cols=212 Identities=14% Similarity=0.207 Sum_probs=153.5
Q ss_pred cCCC-Cccccc-cc--hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 385 YRPS-NFNTLI-GQ--NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 385 ~~p~-~f~~lv-Gq--~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
..|. +|++++ |+ ..+...+.........++.++||||+|+|||++++++++.+....+.
T Consensus 98 l~~~~tfd~fv~g~~n~~a~~~~~~~a~~~~~~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~----------------- 160 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSFAYHAALEVAKHPGRYNPLFIYGGVGLGKTHLLQSIGNYVVQNEPD----------------- 160 (440)
T ss_dssp CCTTCSGGGCCCCTTTHHHHHHHHHHHHSTTSSCCEEEECSSSSSHHHHHHHHHHHHHHHCCS-----------------
T ss_pred CCCCCChhhcCCCCchHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHHHHhCCC-----------------
Confidence 3343 789987 64 34455566665553325679999999999999999999998532111
Q ss_pred hhccCCCccEEEEccCCCcCHHHHHHHHHHHhhc------CccC-CceEEEeccCccCCH--HHHHHHHHhhcCC-CCcE
Q psy13354 461 KIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYA------PINA-RYKIYVIDEVHMLTH--HAFNAMLKTLEEP-PKYI 530 (1342)
Q Consensus 461 ~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~------p~~~-~~rvviIDE~~~L~~--~~~~~Ll~~Le~p-~~~~ 530 (1342)
..++.+++... ..++....... .... ...+++|||++.+.. ..++.|+.+++.. ....
T Consensus 161 -------~~v~~v~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~ 228 (440)
T 2z4s_A 161 -------LRVMYITSEKF-----LNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGK 228 (440)
T ss_dssp -------SCEEEEEHHHH-----HHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTC
T ss_pred -------CeEEEeeHHHH-----HHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCC
Confidence 12444443321 11222211111 0112 567999999999875 5677788877542 2234
Q ss_pred EEEEEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHH
Q psy13354 531 KFILATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 531 vlIl~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~k 603 (1342)
.+|++++.+. .+.++|.+|+ .++.+.+|+.+++..++...+...++.++++++++|++.++||+|.+.+.|++
T Consensus 229 ~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn~R~l~~~L~~ 308 (440)
T 2z4s_A 229 QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIK 308 (440)
T ss_dssp EEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSCHHHHHHHHHH
T ss_pred eEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 5666776643 3678999998 68999999999999999999999999999999999999999999999999999
Q ss_pred HHhhc---CCCCCHHHHHHHhccCc
Q psy13354 604 AINYS---SEKITLNSMQEMLSIID 625 (1342)
Q Consensus 604 l~~~~---~~~It~e~V~~~v~~~~ 625 (1342)
+..++ +..||.+++++++....
T Consensus 309 ~~~~a~~~~~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 309 LLVYKETTGKEVDLKEAILLLKDFI 333 (440)
T ss_dssp HHHHHHHSSSCCCHHHHHHHTSTTT
T ss_pred HHHHHHHhCCCCCHHHHHHHHHHHh
Confidence 88776 45699999999997654
No 264
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Probab=99.56 E-value=8.6e-14 Score=169.80 Aligned_cols=304 Identities=13% Similarity=0.082 Sum_probs=168.8
Q ss_pred cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHccC--CCCE
Q psy13354 40 SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSVLN--PGDT 115 (1342)
Q Consensus 40 ~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al~~--pGD~ 115 (1342)
+|.+.+|+.+.+.. .. .+... .+. .+...+++++++++++.. +.+++++||++|+..+++.+.. .++.
T Consensus 79 ~p~v~~A~~~~~~~-~~-~~~~~--~~~----~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~g~~~ 150 (451)
T 3oks_A 79 APKVVEAVRSQVGD-FT-HTCFM--VTP----YEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPA 150 (451)
T ss_dssp CHHHHHHHHHHHTT-CS-CCTTT--TSC----CHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHHCCCE
T ss_pred CHHHHHHHHHHHHh-cc-cccCC--ccC----CHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhcCCCe
Confidence 67799998888742 21 11111 111 244555667899988633 4566666999999999987753 4478
Q ss_pred EEEeeccCCccchhhHHhh-----------hCCceeEEEEecCC--C-------C--CCCCHHHHHHHHHh----cCCeE
Q psy13354 116 IMGMSLQEGGHLTHGMMLN-----------MSGKWFNSICYGLN--K-------K--EKIDYKKVEYLAKK----NKPKL 169 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~~~-----------~~g~~~~~v~~~~~--~-------~--~~id~e~Le~~i~~----~~~~l 169 (1342)
|++....+.++......+. ....++..++++.. . + ...+++.+++.+.+ .++++
T Consensus 151 ii~~~~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aa 230 (451)
T 3oks_A 151 VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAA 230 (451)
T ss_dssp EEEETTCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEE
T ss_pred EEEEcCCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEE
Confidence 8877766655443322211 01123345544311 0 0 00124444455442 44566
Q ss_pred EEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC-CeeEE
Q psy13354 170 IIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP-RGGFI 239 (1342)
Q Consensus 170 iv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp-~GG~i 239 (1342)
|++.+.+.. ...+ +++|+++|++||++||+||+|.. +...+... .... ..|++ |+||+++++ ..|++
T Consensus 231 vi~ep~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g-~g~~g~~~~~~~~~~~pdi~--t~sK~l~~G~~iG~v 307 (451)
T 3oks_A 231 VVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTG-FARTGAMFACEHEGIDPDLI--VTAKGIAGGLPLSAV 307 (451)
T ss_dssp EEECSSBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTT-TTTTSSSSGGGGGTCCCSEE--EECGGGGTTSSCEEE
T ss_pred EEEcCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccC-CCccccchhhhhcCCCCCee--eehhhhhCCcceEEE
Confidence 776553332 1222 99999999999999999999862 21112111 1111 24766 667999442 22999
Q ss_pred EEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----C-cEEeeCCCCCe
Q psy13354 240 LMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----G-IRIVSGGTKSH 314 (1342)
Q Consensus 240 v~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g-~~~~~~~~~~~ 314 (1342)
++++++++.+........+++ ++...+++.+..+.+.+ +.+.+++.++.+++++.|.+. + +.... ..+.
T Consensus 308 ~~~~~~~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~--~~G~ 381 (451)
T 3oks_A 308 TGRAEIMDSPHVSGLGGTYGG--NPIACAAALATIETIES--EGLVARAQQIEKIMKDRLGRLQAEDDRIGDVR--GRGA 381 (451)
T ss_dssp EEEHHHHTCSCTTSBCCSSSS--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHHHCTTEEEEE--EETT
T ss_pred EECHHHHhhhcCCCcCCCCCC--CHHHHHHHHHHHHHHhh--hhHHHHHHHHHHHHHHHHHHHHhhCCCeEEEE--EeeE
Confidence 999998887765443333333 33334344444443321 134566666667777666552 3 22222 2345
Q ss_pred EEEEEccCC-------CCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 315 IILVDLRNK-------KITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 315 ~v~i~~~~~-------~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
++++.+... ....++...+++ +||.+.+...+ ...+|++++..++.
T Consensus 382 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~~~~--------~~~iRi~~~~~~t~ 434 (451)
T 3oks_A 382 MIAMELVKAGTTEPDADLTKALCAGAHA-AGVIVLSCGTY--------GNVVRFLPPLSIGD 434 (451)
T ss_dssp EEEEEEBSTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT--------SCEEEECCCTTCCH
T ss_pred EEEEEEecCccCCCCHHHHHHHHHHHHh-CCcEEecCCCC--------CCEEEEECCCCCCH
Confidence 777776431 112345555555 59999875221 24689987766553
No 265
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.1e-13 Score=164.36 Aligned_cols=202 Identities=15% Similarity=0.192 Sum_probs=151.2
Q ss_pred CCCccccccchhhHHHHHHHHH------------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALD------------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~------------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+|+.|.+.+++.|.+.+. .-..+.++|||||||||||++|+++|+++++
T Consensus 168 ~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~--------------- 232 (428)
T 4b4t_K 168 DVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKA--------------- 232 (428)
T ss_dssp SCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTC---------------
T ss_pred CCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Confidence 3589999999999999988874 2256788999999999999999999999974
Q ss_pred CCcchhhhccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------------HH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------------HH 514 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------------~~ 514 (1342)
.++.++++... +...+++++..+... .+.|+++||+|.+. ..
T Consensus 233 --------------~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~----aP~IifiDEiD~i~~~R~~~~~~~~~~~~r 294 (428)
T 4b4t_K 233 --------------AFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN----APSIIFIDEVDSIATKRFDAQTGSDREVQR 294 (428)
T ss_dssp --------------EEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT----CSEEEEEECTHHHHCSCSSSCSCCCCHHHH
T ss_pred --------------CeEEEecchhhccccchhHHHHHHHHHHHHHc----CCCeeechhhhhhhccccCCCCCCChHHHH
Confidence 46666654321 234577777766543 34699999999651 12
Q ss_pred HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEc-CCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH
Q psy13354 515 AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLK-KMLHHDIVNNLCYILNKENIKFETSALNLIAT 588 (1342)
Q Consensus 515 ~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~-~l~~~el~~~l~~~~~~~g~~i~~~al~~La~ 588 (1342)
..+.|+..++. ....+++|++||.++.+++++++ |+ ..++|+ .|+.++...+++.++++..+. ++..++.|++
T Consensus 295 ~l~~lL~~ldg~~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~ 373 (428)
T 4b4t_K 295 ILIELLTQMDGFDQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLII 373 (428)
T ss_dssp HHHHHHHHHHHSCSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHH
T ss_pred HHHHHHHHhhCCCCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHH
Confidence 35677777773 45678899999999999999997 77 578895 688899999998888765542 2234788898
Q ss_pred hcCC-cHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 589 GAQG-SMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.+.| +-.++.+++..+...+ ...|+.+|+.+++.
T Consensus 374 ~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~ 412 (428)
T 4b4t_K 374 RNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYA 412 (428)
T ss_dssp HTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHH
Confidence 8765 6777777777765544 23488888887764
No 266
>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*
Probab=99.55 E-value=1.6e-13 Score=164.36 Aligned_cols=242 Identities=17% Similarity=0.163 Sum_probs=160.5
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-H-hhhCCceeEEEEecCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-M-LNMSGKWFNSICYGLNKKEKI 153 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~-~~~~g~~~~~v~~~~~~~~~i 153 (1342)
.++++.++++.|.+.+++++ ||++|+.. +.+++++||+|++....|++...... . ....|. .++.++.+
T Consensus 70 ~~l~~~la~l~g~~~~~~~~-sG~~Ai~~-~~~l~~~gd~Vi~~~~~y~~~~~~~~~~~~~~~g~--~~~~v~~~----- 140 (400)
T 3nmy_A 70 FAYERCVAALEGGTRAFAFA-SGMAATST-VMELLDAGSHVVAMDDLYGGTFRLFERVRRRTAGL--DFSFVDLT----- 140 (400)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHH-HHTTSCTTCEEEEESSCCHHHHHHHHHTHHHHHCC--EEEEECTT-----
T ss_pred HHHHHHHHHHhCCCCEEEec-CHHHHHHH-HHHHcCCCCEEEEeCCCchHHHHHHHHhhHhhcCe--EEEEECCC-----
Confidence 33444899999988777777 99999998 56788999999988866654433322 2 334466 45555654
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCcc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKS 230 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~ 230 (1342)
|++++++++++ ++++|++.+++++ ...++++|+++|++||+++|+|++|+.+.... ++. .+|++++|++|+
T Consensus 141 d~~~l~~~i~~-~~~~v~~e~~~np~G~~~~l~~i~~la~~~g~~livDe~~~~~~~~~-----~~~~g~div~~S~sK~ 214 (400)
T 3nmy_A 141 DPAAFKAAIRA-DTKMVWIETPTNPMLKLVDIAAIAVIARKHGLLTVVDNTFASPMLQR-----PLSLGADLVVHSATKY 214 (400)
T ss_dssp SHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHTTCEEEEECTTTHHHHCC-----GGGGTCSEEEEETTTT
T ss_pred CHHHHHHHhcc-CCCEEEEECCCCCCCeeecHHHHHHHHHHcCCEEEEECCCcccccCC-----hhhcCCcEEEecCccc
Confidence 89999998875 4566666665555 44599999999999999999999998665421 222 379999999999
Q ss_pred CCCC---Cee-EEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhCC-c
Q psy13354 231 LRGP---RGG-FILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG-I 304 (1342)
Q Consensus 231 l~gp---~GG-~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~g-~ 304 (1342)
++|+ .|| +++. ++++.+.+...... .+...++..+++.... ++ .+..+.++..+++..+.+.|++.. +
T Consensus 215 l~g~g~~~gG~~vv~~~~~~~~~l~~~~~~--~g~~~~~~~a~~~l~~---l~-~l~~r~~~~~~~a~~l~~~L~~~p~v 288 (400)
T 3nmy_A 215 LNGHSDMVGGIAVVGDNAELAEQMAFLQNS--IGGVQGPFDSFLALRG---LK-TLPLRMRAHCENALALAQWLETHPAI 288 (400)
T ss_dssp TTCSSSCCCEEEEECSCHHHHHHHHHHHHH--HCCBCCHHHHHHHHHH---HT-THHHHHHHHHHHHHHHHHHHTTCTTE
T ss_pred cCCCCCcceeEEEEeCCHHHHHHHHHHHHh--cCCCCCHHHHHHHHHh---Hh-HHHHHHHHHHHHHHHHHHHHHcCCCE
Confidence 9655 347 5554 55677776653222 2233344444333222 22 455667888999999999998753 4
Q ss_pred EEeeCC----------------CCCeEEEEEccCCCCCHHHHHHHHHHCCcee
Q psy13354 305 RIVSGG----------------TKSHIILVDLRNKKITGKIAESILESANIIC 341 (1342)
Q Consensus 305 ~~~~~~----------------~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v 341 (1342)
..+..| ..+.++++.++.. .+....+++...+..
T Consensus 289 ~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~---~~~~~~~~~~l~~~~ 338 (400)
T 3nmy_A 289 EKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGG---FDAAKRFCEKTELFT 338 (400)
T ss_dssp EEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTH---HHHHHHHHHHCSSSE
T ss_pred eEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCc---HHHHHHHHHcCCcce
Confidence 332211 1246888888642 245566666644433
No 267
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*
Probab=99.55 E-value=4.3e-13 Score=163.52 Aligned_cols=302 Identities=12% Similarity=0.033 Sum_probs=167.0
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHccC----CC
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLN----PG 113 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~~----pG 113 (1342)
.+|.+.+|+.+.+. .... +.. ..... +...+++++++++++.. +.+++++||++|+..+++++.. +|
T Consensus 61 ~~p~v~~A~~~~~~-~~~~-~~~--~~~~~----~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~~~~G 132 (448)
T 3dod_A 61 RKKELDDAIKKQLG-KIAH-STL--LGMTN----VPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIG 132 (448)
T ss_dssp SCHHHHHHHHHHHT-TCSC-CCC--SSSEE----HHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHH-hccC-ccc--cccCC----HHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHHHhhC
Confidence 36779999888874 2211 111 11112 34455666899888644 4555666999999999998865 45
Q ss_pred ----CEEEEeeccCCccchhhHHhhhC-----C---ceeEEEEecCCCCCCC-----------CHHHHHHHHH--hcCCe
Q psy13354 114 ----DTIMGMSLQEGGHLTHGMMLNMS-----G---KWFNSICYGLNKKEKI-----------DYKKVEYLAK--KNKPK 168 (1342)
Q Consensus 114 ----D~Vlv~~~~~~~~~s~~~~~~~~-----g---~~~~~v~~~~~~~~~i-----------d~e~Le~~i~--~~~~~ 168 (1342)
|+|++....+.++......+... + .......++....+.. |++++++++. ..+++
T Consensus 133 ~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a 212 (448)
T 3dod_A 133 KPEKQKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIA 212 (448)
T ss_dssp CTTCCEEEEEC-----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEE
T ss_pred CCCCCEEEEECCCCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEE
Confidence 99998776654432211111000 0 0011122233222222 4888999887 33456
Q ss_pred EEEEcCCC-CC-c-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCC--CCCC-CCcEEEecCCccCCCC--C
Q psy13354 169 LIIAGASA-YS-Q-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYP--NPVP-FADFITSTTHKSLRGP--R 235 (1342)
Q Consensus 169 liv~~~s~-~~-~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp--~ 235 (1342)
+|++.+.+ ++ + ..+ +++|+++|++||++||+||+|. +|.. +... .... ..|++ ++||+++++ .
T Consensus 213 ~vi~ep~~~~~~G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~--g~~~a~~~~~~~~di~--t~sK~l~~G~~~ 288 (448)
T 3dod_A 213 ALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRT--GKMFACEHENVQPDLM--AAGKGITGGYLP 288 (448)
T ss_dssp EEEEESSEESTTTCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSSGGGGGTCCCSEE--EECGGGGTTSSC
T ss_pred EEEEeCcccCCCCeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcc--cchhhhhhcCCCCCEE--EecccccCCcCc
Confidence 67765543 33 2 222 9999999999999999999987 2211 1111 1111 14666 466999543 3
Q ss_pred eeEEEEechhHHHHhh-------ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh---CCcE
Q psy13354 236 GGFILMKKKYKKIINS-------AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ---RGIR 305 (1342)
Q Consensus 236 GG~iv~~~~l~~~l~~-------~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~---~g~~ 305 (1342)
.|++++++++++.+.. ....+.++. ++..++++.+..+.+.+ +.+.+++.++.+++++.|.+ .+..
T Consensus 289 ig~v~~~~~~~~~~~~~~~~~~~~~~~~t~~~--~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~~~~~l~~l~~~~~~ 364 (448)
T 3dod_A 289 IAVTFATEDIYKAFYDDYENLKTFFHGHSYTG--NQLGCAVALENLALFES--ENIVEQVAEKSKKLHFLLQDLHALPHV 364 (448)
T ss_dssp CEEEEEEHHHHHTTCSCGGGCCCCCCCCTTTT--CHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHHHHHTTSTTE
T ss_pred eEEEEECHHHHHHhhhccccCCcccccCCCCc--CHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHhcCCCe
Confidence 3999999999888765 222222222 33444444444443321 23455666666666666655 2221
Q ss_pred EeeCCCCCeEEEEEccCCCC-----------CHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 306 IVSGGTKSHIILVDLRNKKI-----------TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 306 ~~~~~~~~~~v~i~~~~~~~-----------~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
... ...+.++|+.+..... ..++...++++ ||.+.+. .+++|++++..++.
T Consensus 365 ~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gv~~~~~-----------~~~iRi~~~~~~t~ 426 (448)
T 3dod_A 365 GDI-RQLGFMCGAELVRSKETKEPYPADRRIGYKVSLKMREL-GMLTRPL-----------GDVIAFLPPLASTA 426 (448)
T ss_dssp EEE-EEETTEEEEEECSBTTTTBCCCGGGCHHHHHHHHHHHT-TEECCEE-----------TTEEEECCCTTCCH
T ss_pred EEE-EeeeEEEEEEEccCcccccccchhhHHHHHHHHHHHHC-CcEEecc-----------CCEEEEECCCCCCH
Confidence 111 1235577887765322 14566666665 9999864 14699987765553
No 268
>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*
Probab=99.54 E-value=1e-14 Score=176.47 Aligned_cols=300 Identities=12% Similarity=0.016 Sum_probs=189.7
Q ss_pred CceeeeecCCCCcHH--HHHHHhHHHHhccccCCCCCCccCCcc-h---HHHHHHHHHHHHHHHhC--CC-CceEecCCH
Q psy13354 28 NNIELIASENYTSLA--VMEAQGTLLTNKYAEGYPGKRYYGGCK-F---IDLIEKIAINRLKKIFN--AE-AANVQPHSG 98 (1342)
Q Consensus 28 ~~i~l~a~~n~l~~~--v~eal~~~l~~~~~~g~~~~~~~~~~~-~---~~~Le~~~~~~la~~~g--~~-~~vi~~~sG 98 (1342)
..+.+..+++.++++ +.+++.+.+.. . +.. ...|.... + ..++++++++++....+ .+ +.+++++|+
T Consensus 57 ~~i~l~~g~~~~~~~~~v~~a~~~~l~~-~--~~~-~~~Y~~~~~G~~~~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~ 132 (427)
T 2hox_A 57 CSADVASGDGLFLEEYWKQHKEASAVLV-S--PWH-RMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGV 132 (427)
T ss_dssp CCEECCSCCCGGGHHHHTTSHHHHCEEE-C--TTT-TCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHH
T ss_pred ceEEecCcCCCCCCCHHHHHhHHhhhhc-C--Ccc-cccCCCCCCCccchHHHHHHHHHHHHHhCCcCCCCCEEEEeCCH
Confidence 447777777665543 55555544421 1 110 00132222 3 56888877777765433 22 455666588
Q ss_pred HHHHHHHHHHc--------cCCCCEEEEeeccCCccchhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCCeEE
Q psy13354 99 SQANQAVFFSV--------LNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI 170 (1342)
Q Consensus 99 s~A~~~al~al--------~~pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~~li 170 (1342)
++|+..++.++ ++|||+|++..+.|+ .....+...|..+.. +.+|++.+++.+++ +++++
T Consensus 133 ~~al~~~~~~l~~~~~~~~~~~Gd~Vlv~~P~y~---~~~~~~~~~g~~~~~--------~~~d~~~l~~~~~~-~~k~v 200 (427)
T 2hox_A 133 TQLIHGLVISLSPNMTATPDAPESKVVAHAPFYP---VFREQTKYFDKKGYV--------WAGNAANYVNVSNP-EQYIE 200 (427)
T ss_dssp HHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCH---HHHHHHHHSCBTTEE--------EEEEGGGGTTCSCG-GGEEE
T ss_pred HHHHHHHHHHHhhccccccCCCCCEEEEeCCCcc---cHHHHHHHcCCeeee--------ecCCHHHHHHhhcC-CceEE
Confidence 88999999999 899999997775554 444445566654332 23466777766654 45666
Q ss_pred EEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCC---CCCcEEEecCCccCCCCCe---eEEEEe
Q psy13354 171 IAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPV---PFADFITSTTHKSLRGPRG---GFILMK 242 (1342)
Q Consensus 171 v~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l---~~~Divv~S~sK~l~gp~G---G~iv~~ 242 (1342)
++++++|| ...+ + +++ ++.++.|+++.. . +.+.. ...+++++||||.+ |+.| ||++++
T Consensus 201 ~l~~p~NPtG~~~~-~----~l~--~~~~i~d~~~~~----~--~~s~~~~~~~~~i~~~S~SK~~-g~~G~RiG~~~~~ 266 (427)
T 2hox_A 201 MVTSPNNPEGLLRH-A----VIK--GCKSIYDMVYYW----P--HYTPIKYKADEDILLFTMSKFT-GHSGSRFGWALIK 266 (427)
T ss_dssp EEESSCTTTCCCCC-C----SST--TCEEEEECTTCS----T--TTSCCCSCBCCSEEEEEHHHHT-SCGGGCCEEEEEC
T ss_pred EEcCCCCCcccccH-H----HHc--CCCEEEeecccC----C--CCCccccCCCceEEEEeChhcC-CCCCceEEEEEEC
Confidence 66666666 2335 2 233 567888987632 1 11111 23589999999999 6666 999994
Q ss_pred -chhHHHHhhccCCccccCCcHHHHHHHHHHHHHh----------ccchHHHHHHHHHHHHHHHHHHHHhC-CcEE--e-
Q psy13354 243 -KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEV----------LKPDFKIYQKQVVKNAKILSKILDQR-GIRI--V- 307 (1342)
Q Consensus 243 -~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~----------l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~--~- 307 (1342)
+++++.+......... +.+.+.+.++..++... ...+++..++++.++++++.+.|++. |+.+ .
T Consensus 267 ~~~l~~~l~~~~~~~~~-~~~~~~q~a~~~~L~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~ 345 (427)
T 2hox_A 267 DESVYNNLLNYMTKNTE-GTPRETQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELP 345 (427)
T ss_dssp CHHHHHHHHHHHHHHTS-SCCHHHHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCC
T ss_pred CHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHhhcchhhhccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccc
Confidence 7888887764332222 34455555555555432 13356677889999999999999986 6654 1
Q ss_pred ----------eCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 308 ----------SGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 308 ----------~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
..+.+++++|++++. .+.+++..+++++||.+.++..++. . .+++|++++.
T Consensus 346 ~~~~~~~~~~~~p~~g~f~~~~~~~--~~~~~~~~ll~~~gI~v~pg~~f~~-~----~~~~Ris~~~ 406 (427)
T 2hox_A 346 QSEYCNYFRRMRPPSPSYAWVKCEW--EEDKDCYQTFQNGRINTQNGVGFEA-S----SRYVRLSLIK 406 (427)
T ss_dssp SCEEETTTTEEECCCCSEEEEEECS--GGGCSHHHHHHHTTEECEEGGGGTS-C----TTEEEEECSS
T ss_pred cccccccccccCCCCceEEEEECCC--cHHHHHHHHHHHCCEEEcCCCccCC-C----CCEEEEEecC
Confidence 123457899999875 2345778888778999998765543 1 4679999984
No 269
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.53 E-value=8.1e-14 Score=164.00 Aligned_cols=242 Identities=15% Similarity=0.150 Sum_probs=158.0
Q ss_pred cCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCC---CCCCCCcccCCCCCCcchhh
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG---IDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~---~~~~~~~~~~~c~~~~~~~~ 461 (1342)
-+|.+|++++|++.+++.+..++..+...+ +||+||+|||||++|+.+++.+.... ..........+|..|..|..
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~~~~~-vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDPGIGG-VLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIPDWATVLS 96 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCGGGCC-EEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSCTTCCCSC
T ss_pred CCCCCchhccChHHHHHHHHHHhhCCCCce-EEEECCCCccHHHHHHHHHHhCccccccccccccccccccccchhhhhc
Confidence 357789999999998887766665444444 89999999999999999999886210 00011223334555666653
Q ss_pred hccCCC-ccEEEEccCCCc----CHHHHHHHHHHHhhcC-----ccCCceEEEeccCccCCHHHHHHHHHhhcCC-----
Q psy13354 462 IDNGCF-MDYIEMDAASTR----GINEMAQLLEQTIYAP-----INARYKIYVIDEVHMLTHHAFNAMLKTLEEP----- 526 (1342)
Q Consensus 462 ~~~~~~-~d~~~i~~~~~~----~~~~i~~ii~~~~~~p-----~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p----- 526 (1342)
+....+ ..++.+...... +..++...+....... ..+...+++|||++.++.+.++.|++.+++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~~~~~Ll~~le~~~~~~~ 176 (350)
T 1g8p_A 97 TNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVE 176 (350)
T ss_dssp CCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHHHHHHHHHHHHHSEEEEC
T ss_pred cccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHHHHHHHHHHHhcCceEEE
Confidence 332211 223333222110 0001122111111100 0123569999999999999999999998863
Q ss_pred --------CCcEEEEEEeCCCC-CChHHHhccE-EEEEEcCCC-HHHHHHHHHHH-------------------------
Q psy13354 527 --------PKYIKFILATTEPQ-KIPITVLSRC-IQFNLKKML-HHDIVNNLCYI------------------------- 570 (1342)
Q Consensus 527 --------~~~~vlIl~t~~~~-kl~~~L~sR~-~~i~~~~l~-~~el~~~l~~~------------------------- 570 (1342)
+..+++|.++|..+ .+.++|.+|+ ..+.+.+++ .++...++..+
T Consensus 177 ~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~i 256 (350)
T 1g8p_A 177 RDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKAFLEEWRPKDMDIRNQI 256 (350)
T ss_dssp CTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHH
T ss_pred ecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchhhccccccchHHHHHHH
Confidence 24677888887644 7889999999 559999995 44444555442
Q ss_pred ----HHhcCCCcchhHHHHHHHhcCC----cHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhccCcHH
Q psy13354 571 ----LNKENIKFETSALNLIATGAQG----SMRDALSLTDQAINYS---S-EKITLNSMQEMLSIIDQK 627 (1342)
Q Consensus 571 ----~~~~g~~i~~~al~~La~~~~g----~lr~a~~~L~kl~~~~---~-~~It~e~V~~~v~~~~~~ 627 (1342)
....++.++++++++|++.+.+ ++|.+.+.++.+..++ + ..|+.++|.+++......
T Consensus 257 ~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~~l~~ 325 (350)
T 1g8p_A 257 LEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATMALSH 325 (350)
T ss_dssp HHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHGG
T ss_pred HHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHHhh
Confidence 2234668999999999998766 8999999999876654 3 349999999877554333
No 270
>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3
Probab=99.53 E-value=7.7e-14 Score=168.59 Aligned_cols=243 Identities=17% Similarity=0.173 Sum_probs=156.3
Q ss_pred HHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHccCCCCEEEEeeccCCccchhhH-HhhhCCceeEEEEe-cCCCCCCC
Q psy13354 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM-MLNMSGKWFNSICY-GLNKKEKI 153 (1342)
Q Consensus 76 ~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~~pGD~Vlv~~~~~~~~~s~~~-~~~~~g~~~~~v~~-~~~~~~~i 153 (1342)
..+++.+++++|.+.+++++ +|++|+..++.+++.+||+|+++...|++....+. .....|. +++.+ +.+
T Consensus 61 ~~l~~~la~~~g~~~~v~~~-sGt~A~~~~l~~~~~~gd~vi~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~----- 132 (421)
T 2ctz_A 61 DVLEKRLAALEGGKAALATA-SGHAAQFLALTTLAQAGDNIVSTPNLYGGTFNQFKVTLKRLGI--EVRFTSREE----- 132 (421)
T ss_dssp HHHHHHHHHHHTCSEEEEES-SHHHHHHHHHHHHCCTTCEEEECSCCCHHHHHHHHTHHHHTTC--EEEECCTTC-----
T ss_pred HHHHHHHHHHhCCCceEEec-CHHHHHHHHHHHHhCCCCEEEEeCCCchHHHHHHHHHHHHcCC--EEEEECCCC-----
Confidence 33555899999988777776 89999999999999999999988766665443332 1345566 55656 554
Q ss_pred CHHHHHHHHHhcCCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEccc-chhhhhcCCCCCCCC-CCcEEEecCCc
Q psy13354 154 DYKKVEYLAKKNKPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAH-YAGLIAAGEYPNPVP-FADFITSTTHK 229 (1342)
Q Consensus 154 d~e~Le~~i~~~~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~-~~g~~~~~~~~~~l~-~~Divv~S~sK 229 (1342)
|++++++++++ ++++|++++++++ ...|+++|+++|++||+++|+|++| +.|... .++. .+|++++|+||
T Consensus 133 d~~~l~~~i~~-~~~~v~~~~~~n~~G~~~~l~~i~~~a~~~g~~livD~~~~~~g~~~-----~~~~~~~Di~~~s~~K 206 (421)
T 2ctz_A 133 RPEEFLALTDE-KTRAWWVESIGNPALNIPDLEALAQAAREKGVALIVDNTFGMGGYLL-----RPLAWGAALVTHSLTK 206 (421)
T ss_dssp CHHHHHHHCCT-TEEEEEEESSCTTTCCCCCHHHHHHHHHHHTCEEEEECGGGGGGTSC-----CGGGGTCSEEEEETTT
T ss_pred CHHHHHHhhcc-CCeEEEEECCCCCCCcccCHHHHHHHHHHcCCEEEEECCcccccccC-----CccccCCeEEEECCcc
Confidence 89999998876 4566666665555 4458999999999999999999999 766321 1222 37999999999
Q ss_pred cCCCCC---eeEEEEe--chh----HHHHhhccCCc------------------------cccCCcHHHHHHHHHHHHHh
Q psy13354 230 SLRGPR---GGFILMK--KKY----KKIINSAVFPG------------------------IQGGPLMHVIAAKAVAFKEV 276 (1342)
Q Consensus 230 ~l~gp~---GG~iv~~--~~l----~~~l~~~~~~~------------------------~~~~~~~~~~~Aaa~al~~~ 276 (1342)
+++++. ||+++.+ +++ .+.+......+ ..+....+..+++....
T Consensus 207 ~l~~~g~~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~r~~~~~~~g~~~~~~~a~~~~~~--- 283 (421)
T 2ctz_A 207 WVGGHGAVIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFIVKARVDGLRDQGQALGPFEAWVVLLG--- 283 (421)
T ss_dssp TTTCSSCCCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHHHHHHHTHHHHHCCCCCHHHHHHHHHH---
T ss_pred cccCCCCcEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHHHHHHHHHHHhcCCCCCHHHHHHHHcC---
Confidence 996544 3555542 222 22332210000 01222233333332222
Q ss_pred ccchHHHHHHHHHHHHHHHHHHHHhC-CcEEee-C----------------CCCCeEEEEEccCCCCCHHHHHHHHHHCC
Q psy13354 277 LKPDFKIYQKQVVKNAKILSKILDQR-GIRIVS-G----------------GTKSHIILVDLRNKKITGKIAESILESAN 338 (1342)
Q Consensus 277 l~~~~~~~~~~l~~~a~~l~~~L~~~-g~~~~~-~----------------~~~~~~v~i~~~~~~~~~~~~~~ll~~~G 338 (1342)
++ .+....+++.+++.++.+.|.+. ++..+. + ...+.++.+.+.+. .+....++++.+
T Consensus 284 l~-~l~~r~~~~~~~a~~l~~~L~~~p~v~~v~~p~~~~~~~~~~~~~~~~~~~g~ivsf~l~~~---~~~~~~~~~~l~ 359 (421)
T 2ctz_A 284 ME-TLSLRAERHVENTLHLAHWLLEQPQVAWVNYPGLPHHPHHDRAQKYFKGKPGAVLTFGLKGG---YEAAKRFISRLK 359 (421)
T ss_dssp HT-THHHHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTCTTHHHHHHHHTTCCCSEEEEEETTH---HHHHHHHHHTCS
T ss_pred cc-hHHHHHHHHHHhHHHHHHHHHhCCCeeEEECCCCCCCCCHHHHHHhccCCCceEEEEEeCCC---HHHHHHHHHhCC
Confidence 22 34455677778999999999885 676553 1 12355777777642 344566666544
Q ss_pred c
Q psy13354 339 I 339 (1342)
Q Consensus 339 I 339 (1342)
+
T Consensus 360 ~ 360 (421)
T 2ctz_A 360 L 360 (421)
T ss_dssp S
T ss_pred c
Confidence 4
No 271
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.53 E-value=9.6e-14 Score=156.29 Aligned_cols=203 Identities=14% Similarity=0.183 Sum_probs=143.7
Q ss_pred CCCccccccchhhHHHHHHHHHc---C--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDK---K--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~---~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+..|++++|++.+++.+.+.+.. . ..++.+||+||||+|||++|+++++.+.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~---------------- 65 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQV---------------- 65 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTC----------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCC----------------
Confidence 45799999999999888777632 1 34567999999999999999999999863
Q ss_pred CcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH------------H---
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH------------H--- 514 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~------------~--- 514 (1342)
.++.++++.. .....++.++..+... .+.+|+|||+|.+.. .
T Consensus 66 -------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~----~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~ 128 (262)
T 2qz4_A 66 -------------PFLAMAGAEFVEVIGGLGAARVRSLFKEARAR----APCIVYIDEIDAVGKKRSTTMSGFSNTEEEQ 128 (262)
T ss_dssp -------------CEEEEETTTTSSSSTTHHHHHHHHHHHHHHHT----CSEEEEEECC-------------------CH
T ss_pred -------------CEEEechHHHHhhccChhHHHHHHHHHHHHhc----CCeEEEEeCcchhhccccccccCccchhHHH
Confidence 1333333211 1123455555555432 356999999998831 1
Q ss_pred HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHHHHH
Q psy13354 515 AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNLIAT 588 (1342)
Q Consensus 515 ~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~La~ 588 (1342)
..+.|+..++. .+..+++|+++|.++.+.+++.+ |+ ..+.+++|+.++..+++...+++.+...+.+. ...+++
T Consensus 129 ~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~ 208 (262)
T 2qz4_A 129 TLNQLLVEMDGMGTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAE 208 (262)
T ss_dssp HHHHHHHHHHTCCTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHH
T ss_pred HHHHHHHHhhCcCCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHH
Confidence 23455555554 34578889999998888889988 88 78999999999999999999999888877664 578898
Q ss_pred hcCC-cHHHHHHHHHHHHhhcC----CCCCHHHHHHHhc
Q psy13354 589 GAQG-SMRDALSLTDQAINYSS----EKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~g-~lr~a~~~L~kl~~~~~----~~It~e~V~~~v~ 622 (1342)
.+.| +.+++.++++.+...+. ..|+.+++.+++.
T Consensus 209 ~~~g~~~~~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~ 247 (262)
T 2qz4_A 209 LTPGFSGADIANICNEAALHAAREGHTSVHTLNFEYAVE 247 (262)
T ss_dssp TCTTCCHHHHHHHHHHHHTC--------CCBCCHHHHHH
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 8876 46688888888776653 2377777766653
No 272
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0
Probab=99.53 E-value=2.5e-13 Score=164.75 Aligned_cols=289 Identities=16% Similarity=0.065 Sum_probs=165.2
Q ss_pred CceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.|.+.++. +. .+|.+.+++.+.+..... +.... +...+++++++++++..+.+++++||++|+
T Consensus 56 ~ylD~~~~~~~~~lG~~~p~v~~a~~~~~~~~~~-------~~~~~----~~~~~l~~~la~~~~~~~~v~~~~sGsea~ 124 (434)
T 3l44_A 56 KYIDYLAAYGPIITGHAHPHITKAITTAAENGVL-------YGTPT----ALEVKFAKMLKEAMPALDKVRFVNSGTEAV 124 (434)
T ss_dssp EEEECCGGGTTCSSCBTCHHHHHHHHHHHHHCSC-------CSSCC----HHHHHHHHHHHHHCTTCSEEEEESSHHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcC-------CCCCC----HHHHHHHHHHHHhCCCCCEEEEeCchHHHH
Confidence 345555543 23 367799999988854211 11112 233445558888876445566666999999
Q ss_pred HHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCcee-----------------EEEEecCCCCCCCCHHHHHHHHH
Q psy13354 103 QAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWF-----------------NSICYGLNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 103 ~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~-----------------~~v~~~~~~~~~id~e~Le~~i~ 163 (1342)
..++..+.. ++++|++....+.++..... ...|... .++.++++ |++++++++.
T Consensus 125 ~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~ 197 (434)
T 3l44_A 125 MTTIRVARAYTGRTKIMKFAGCYHGHSDLVL--VAAGSGPSTLGTPDSAGVPQSIAQEVITVPFN-----NVETLKEALD 197 (434)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCCSSGGGG--BC-------CCCBSSTTCCHHHHTTEEEECTT-----CHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCcHHHH--hhcCCcccccCCCCcCCCCCcCCCceEecCcc-----cHHHHHHHHH
Confidence 999988754 77899987666544332211 1111110 12222322 8999999887
Q ss_pred h--cCCeEEEEcCCCCCc--ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCC
Q psy13354 164 K--NKPKLIIAGASAYSQ--YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLR 232 (1342)
Q Consensus 164 ~--~~~~liv~~~s~~~~--~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~ 232 (1342)
+ .+.+++++.+.++++ ..+ +++|.++|++||++||+||+|... ..+... .... ..|++ ++||+++
T Consensus 198 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~illI~DEv~~g~--~~g~~~~~~~~~~~~di~--t~sK~~~ 273 (434)
T 3l44_A 198 KWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAF--RFMYGGAQDLLGVTPDLT--ALGKVIG 273 (434)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHTTTCEEEEECTTTTT--TSSSSCHHHHHTCCCSEE--EEEGGGG
T ss_pred hCCCCEEEEEEcCCCCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccce--eccccHHHHHcCCCCCee--ehhhhhc
Confidence 5 345666665544432 334 999999999999999999999632 222111 0011 14655 5679995
Q ss_pred CCCe-eEEEEechhHHHHhhcc---CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCc
Q psy13354 233 GPRG-GFILMKKKYKKIINSAV---FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGI 304 (1342)
Q Consensus 233 gp~G-G~iv~~~~l~~~l~~~~---~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~ 304 (1342)
++.. |++++++++++.+.... ....++ . ++..++++.+..+...+ +++.+++.++++++++.|.+ .++
T Consensus 274 ~G~~iG~~~~~~~i~~~~~~~~~~~~~~t~~-~-~~~a~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~ 349 (434)
T 3l44_A 274 GGLPIGAYGGKKEIMEQVAPLGPAYQAGTMA-G-NPASMASGIACLEVLQQ--EGLYEKLDELGATLEKGILEQAAKHNI 349 (434)
T ss_dssp TTSSCEEEEECHHHHTTBTTTSSBCCCCTTT-T-CHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CCcCeeeEEEcHHHHHhhccCCCcccCCCCC-c-CHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3222 99999999888776521 111222 2 33444444444444332 34566777777777777765 343
Q ss_pred EEeeCCCCCeEEEEEccCCCC-------------CHHHHHHHHHHCCceeeec
Q psy13354 305 RIVSGGTKSHIILVDLRNKKI-------------TGKIAESILESANIICNKN 344 (1342)
Q Consensus 305 ~~~~~~~~~~~v~i~~~~~~~-------------~~~~~~~ll~~~GI~v~~~ 344 (1342)
.... ...+.++++.+..... ..++...+++ +||.+.+.
T Consensus 350 ~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~ 400 (434)
T 3l44_A 350 DITL-NRLKGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQ-EGVNLAPS 400 (434)
T ss_dssp CEEE-EEETTEEEEEESSSCCCSHHHHHHSCHHHHHHHHHHHHH-TTEECCSS
T ss_pred CEEE-EeeccEEEEEEecCcccchhhccccCHHHHHHHHHHHHH-CCeEEeec
Confidence 2212 1235567776643211 1345555555 59998754
No 273
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.52 E-value=2e-13 Score=164.86 Aligned_cols=202 Identities=20% Similarity=0.278 Sum_probs=150.1
Q ss_pred CCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~ 455 (1342)
+.+|++++|++.+++.+.+.+.. .+.+..+||+||||||||++|++++..++.
T Consensus 12 ~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~---------------- 75 (476)
T 2ce7_A 12 RVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANV---------------- 75 (476)
T ss_dssp CCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTC----------------
T ss_pred CCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCC----------------
Confidence 34899999999999888877642 246778999999999999999999998863
Q ss_pred CcchhhhccCCCccEEEEccCCC------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------HH
Q psy13354 456 CSVCVKIDNGCFMDYIEMDAAST------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------HA 515 (1342)
Q Consensus 456 ~~~~~~~~~~~~~d~~~i~~~~~------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~~ 515 (1342)
.++.++++.. .+...++.++..+.. ..+.||+|||+|.+.. ..
T Consensus 76 -------------~f~~is~~~~~~~~~g~~~~~~r~lf~~A~~----~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~ 138 (476)
T 2ce7_A 76 -------------PFFHISGSDFVELFVGVGAARVRDLFAQAKA----HAPCIVFIDEIDAVGRHRGAGLGGGHDEREQT 138 (476)
T ss_dssp -------------CEEEEEGGGTTTCCTTHHHHHHHHHHHHHHH----TCSEEEEEETGGGTCCC---------CHHHHH
T ss_pred -------------CeeeCCHHHHHHHHhcccHHHHHHHHHHHHh----cCCCEEEEechhhhhhhcccccCcCcHHHHHH
Confidence 1233332211 122356667666643 2356999999998732 24
Q ss_pred HHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HHHHHHHh
Q psy13354 516 FNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETS-ALNLIATG 589 (1342)
Q Consensus 516 ~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al~~La~~ 589 (1342)
++.|+..++. .+..+++|.+||.++.+.+++.+ |+ ..+.+.+|+.++..++++.++++..+ .++ .+..+++.
T Consensus 139 l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l--~~~v~l~~la~~ 216 (476)
T 2ce7_A 139 LNQLLVEMDGFDSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL--AEDVNLEIIAKR 216 (476)
T ss_dssp HHHHHHHHHHSCGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB--CTTCCHHHHHHT
T ss_pred HHHHHHHHhccCCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC--cchhhHHHHHHh
Confidence 5677777763 34578899999999888888876 77 68899999999999999888776543 333 37889999
Q ss_pred cCCcH-HHHHHHHHHHHhhc----CCCCCHHHHHHHhcc
Q psy13354 590 AQGSM-RDALSLTDQAINYS----SEKITLNSMQEMLSI 623 (1342)
Q Consensus 590 ~~g~l-r~a~~~L~kl~~~~----~~~It~e~V~~~v~~ 623 (1342)
+.|+. +++.+.++.+..++ ...|+.+++.+++..
T Consensus 217 t~G~sgadL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~ 255 (476)
T 2ce7_A 217 TPGFVGADLENLVNEAALLAAREGRDKITMKDFEEAIDR 255 (476)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred cCCCcHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHH
Confidence 98877 88999999876654 235999998887754
No 274
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*
Probab=99.52 E-value=9.9e-14 Score=168.37 Aligned_cols=291 Identities=13% Similarity=0.082 Sum_probs=169.0
Q ss_pred ceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-CCCCceEecCCHHHHH
Q psy13354 29 NIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-NAEAANVQPHSGSQAN 102 (1342)
Q Consensus 29 ~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g~~~~vi~~~sGs~A~ 102 (1342)
.|.+.++. ++ .+|.+.+++.+.+.... .+ .+ .. ++..++++++++++ +.+. +++++||++|+
T Consensus 58 ~lD~~~~~~~~~lG~~~~~v~~a~~~~~~~~~--~~---~~--~~----~~~~~l~~~la~~~~~~~~-v~~~~sgseA~ 125 (434)
T 2epj_A 58 IVDLVLAYGPLILGHKHPRVLEAVEEALARGW--LY---GA--PG----EAEVLLAEKILGYVKRGGM-IRFVNSGTEAT 125 (434)
T ss_dssp EEESSGGGTTCTTCBTCHHHHHHHHHHHHTCS--CC---SS--CC----HHHHHHHHHHHHHHCTTCE-EEEESSHHHHH
T ss_pred EEEcccchhcccCCCCCHHHHHHHHHHHHhCC--CC---CC--CC----HHHHHHHHHHHHhCCCCCE-EEEeCCHHHHH
Confidence 45555553 23 46779999988885311 11 11 12 44455666888888 5444 55555999999
Q ss_pred HHHHHHc--cCCCCEEEEeeccCCccchhhHHh-----------hhCCce----eEEEEecCCCCCCCCHHHHHHHHHh-
Q psy13354 103 QAVFFSV--LNPGDTIMGMSLQEGGHLTHGMML-----------NMSGKW----FNSICYGLNKKEKIDYKKVEYLAKK- 164 (1342)
Q Consensus 103 ~~al~al--~~pGD~Vlv~~~~~~~~~s~~~~~-----------~~~g~~----~~~v~~~~~~~~~id~e~Le~~i~~- 164 (1342)
..++.+. +.+++.|++....+.++....... ...|.. ..++.++.+ |++++++.+++
T Consensus 126 ~~al~~ar~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~ 200 (434)
T 2epj_A 126 MTAIRLARGYTGRDLILKFDGCYHGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYN-----DVEALERVFAEY 200 (434)
T ss_dssp HHHHHHHHHHHCCCEEEEEETCCCCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETT-----CHHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCeEEEEcCCcCCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCC-----CHHHHHHHHHhC
Confidence 9999872 334677877665554432211000 011221 123334443 89999998875
Q ss_pred -cCCeEEEEcCCCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCC-
Q psy13354 165 -NKPKLIIAGASAYS-Q-YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRG- 233 (1342)
Q Consensus 165 -~~~~liv~~~s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~g- 233 (1342)
.++++|++.+.+++ + ..+ +++|.++|++||++||+||+|+ |+. .+... .... .+|++ |+||++++
T Consensus 201 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G 276 (434)
T 2epj_A 201 GDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVT-GFR-LGLEGAQGYFNIEGDII--VLGKIIGGG 276 (434)
T ss_dssp GGGEEEEEECSSBCSSSCBCCCHHHHHHHHHHHHHHTCEEEEEETTT-TTT-SSTTHHHHHHTCCCSEE--EEEGGGGTT
T ss_pred CCCEEEEEEeCCcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEcchh-cee-CCcchhhHHhCCCCCee--eecchhcCC
Confidence 24566776554332 3 345 9999999999999999999997 432 12110 0011 24765 67799943
Q ss_pred CCeeEEEEechhHHHHhhccCCccccC-CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEee
Q psy13354 234 PRGGFILMKKKYKKIINSAVFPGIQGG-PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 234 p~GG~iv~~~~l~~~l~~~~~~~~~~~-~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~ 308 (1342)
..+|++++++++++.+......+..++ ..++...+++.+..+.+.+ ++..+++.++++++.+.|.+. ++....
T Consensus 277 ~~~G~v~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aa~~a~l~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 354 (434)
T 2epj_A 277 FPVGAVAGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEE--EPVYSVSREAAKALEEAASEVLDRTGLPYTI 354 (434)
T ss_dssp SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHTCCEEE
T ss_pred cceeeeeecHHHHHhhccCCCcccCCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHhhCCCcEEE
Confidence 244999999988877654211111111 1233344444444443321 235677888888888888764 553211
Q ss_pred CCCCCeEEEEEccCCC-------------CCHHHHHHHHHHCCceeeec
Q psy13354 309 GGTKSHIILVDLRNKK-------------ITGKIAESILESANIICNKN 344 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~~-------------~~~~~~~~ll~~~GI~v~~~ 344 (1342)
. ..+.++|+.++... ...++...++ ++||.+.++
T Consensus 355 ~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~ 401 (434)
T 2epj_A 355 N-RVESMMQLFIGVEEVSNAAQARKADKKFYVKLHEEML-RRGVFIAPS 401 (434)
T ss_dssp E-EETTEEEEEETCSCCSSHHHHTTSCHHHHHHHHHHHH-HTTEECCSS
T ss_pred E-EeeeEEEEEEeCCCcccchhccccCHHHHHHHHHHHH-HCCeEEecc
Confidence 1 23567888876411 1234555555 469999864
No 275
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*
Probab=99.52 E-value=5e-13 Score=161.89 Aligned_cols=290 Identities=13% Similarity=0.059 Sum_probs=166.7
Q ss_pred CceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
+.|.+.++. +. .+|.+.+|+.+.+..... ++...+. ..+++++++++++..+.+++++||++|+
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~-------~~~~~~~----~~~l~~~la~~~~~~~~v~~~~~Gsea~ 122 (429)
T 3k28_A 54 EYIDYVLSWGPLIHGHANDRVVEALKAVAERGTS-------FGAPTEI----ENKLAKLVIERVPSIEIVRMVNSGTEAT 122 (429)
T ss_dssp EEEESCGGGTTCTTCBSCHHHHHHHHHHHHHCSC-------CSSCCHH----HHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EEEECCCChhhcccCCCCHHHHHHHHHHHhhCcC-------cCCCCHH----HHHHHHHHHHhCCCCCEEEEeCChHHHH
Confidence 346555543 23 467799999988853211 1112233 3334558888875344556666999999
Q ss_pred HHHHHHccC--CCCEEEEeeccCCccchhhHHhhhCCcee-----------------EEEEecCCCCCCCCHHHHHHHHH
Q psy13354 103 QAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSGKWF-----------------NSICYGLNKKEKIDYKKVEYLAK 163 (1342)
Q Consensus 103 ~~al~al~~--pGD~Vlv~~~~~~~~~s~~~~~~~~g~~~-----------------~~v~~~~~~~~~id~e~Le~~i~ 163 (1342)
..++..+.. ++++|++.+..+.++.... ....|... ..+.++.+ |++++++++.
T Consensus 123 ~~ai~~a~~~~~~~~vi~~~~~yhg~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~ 195 (429)
T 3k28_A 123 MSALRLARGYTGRNKILKFIGCYHGHGDSL--LIKAGSGVATLGLPDSPGVPEGVAKNTITVAYN-----DLESVKYAFE 195 (429)
T ss_dssp HHHHHHHHHHHTCCEEEEEETCCCCSCGGG--CSSCCTTC-----CCCTTCCHHHHTTEEEEETT-----CHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCCcHHH--HHhcCCcccccCCCCcCCCCCcccCceeecCCC-----CHHHHHHHHH
Confidence 999987753 6778887665554432221 11111111 12222322 8999999887
Q ss_pred h--cCCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCC
Q psy13354 164 K--NKPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLR 232 (1342)
Q Consensus 164 ~--~~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~ 232 (1342)
+ .+++++++.+.+++ ...+ +++|.++|++||++||+||+|. |+ ..+.... ... ..|++ ++||+++
T Consensus 196 ~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~--t~sK~~~ 271 (429)
T 3k28_A 196 QFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMT-GF-RVAYNCGQGYYGVTPDLT--CLGKVIG 271 (429)
T ss_dssp HHGGGEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEECTTT-TT-TSSTTHHHHHHTCCCSEE--EECGGGG
T ss_pred hCCCCEEEEEEcCCCCCCCcccCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchHHHHhCCCCcee--hhhhhhc
Confidence 4 34566666554433 2334 9999999999999999999995 22 2221100 011 14665 5679994
Q ss_pred CC-CeeEEEEechhHHHHhhccCC-ccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEE
Q psy13354 233 GP-RGGFILMKKKYKKIINSAVFP-GIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRI 306 (1342)
Q Consensus 233 gp-~GG~iv~~~~l~~~l~~~~~~-~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~ 306 (1342)
++ ..|++++++++++.+...... ...+...++...+++.+..+... ++..+++.++++++.+.|.+. ++..
T Consensus 272 ~G~~iG~~~~~~~~~~~~~~~~~~~~~~t~~~~~~a~aaa~aal~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~ 348 (429)
T 3k28_A 272 GGLPVGAYGGKAEIMRQVAPSGPIYQAGTLSGNPLAMAAGYETLVQLT---PESYVEFERKAEMLEAGLRKAAEKHGIPH 348 (429)
T ss_dssp TTSCCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHTCC---HHHHHHHHHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCeEEEEEcHHHHhhhccCCCccccCCCCCChHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHhhCCCCE
Confidence 32 239999999988877542211 11111223344444444455443 567788888888888888763 3211
Q ss_pred eeCCCCCeEEEEEccCCCC-------------CHHHHHHHHHHCCceeeec
Q psy13354 307 VSGGTKSHIILVDLRNKKI-------------TGKIAESILESANIICNKN 344 (1342)
Q Consensus 307 ~~~~~~~~~v~i~~~~~~~-------------~~~~~~~ll~~~GI~v~~~ 344 (1342)
... ..+.++++.+..... ..++...+++ +||.+.+.
T Consensus 349 ~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~ 397 (429)
T 3k28_A 349 HIN-RAGSMIGIFFTDEPVINYDAAKSSNLQFFAAYYREMVE-QGVFLPPS 397 (429)
T ss_dssp EEE-EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSS
T ss_pred EEE-eeccEEEEEEecCCcccccccccccHHHHHHHHHHHHH-CCeEEecC
Confidence 111 234566666543211 1345556655 59998754
No 276
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Probab=99.52 E-value=7.4e-13 Score=160.26 Aligned_cols=293 Identities=16% Similarity=0.100 Sum_probs=167.1
Q ss_pred CceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++. +. .+|.+.+++.+.+.. .. . ++. ..+...+++++++++++..+.+++++||++|+
T Consensus 53 ~~lD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~~-~------~~~---~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~ 121 (427)
T 3fq8_A 53 RYIDYVGTWGPAICGHAHPEVIEALKVAMEK-GT-S------FGA---PCALENVLAEMVNDAVPSIEMVRFVNSGTEAC 121 (427)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTT-CS-C------CSS---CCHHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EEEECCCchhhhccCCCCHHHHHHHHHHHHh-CC-C------cCC---CCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHH
Confidence 346655553 23 467799998888742 21 1 111 12455566678999886445666666999999
Q ss_pred HHHHHHcc--CCCCEEEEeeccCCccchhhHHhh-----------hCCc----eeEEEEecCCCCCCCCHHHHHHHHHhc
Q psy13354 103 QAVFFSVL--NPGDTIMGMSLQEGGHLTHGMMLN-----------MSGK----WFNSICYGLNKKEKIDYKKVEYLAKKN 165 (1342)
Q Consensus 103 ~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~~-----------~~g~----~~~~v~~~~~~~~~id~e~Le~~i~~~ 165 (1342)
..++.... ..+++|++....+.++........ ..+. ...++.++.+ |++++++++++.
T Consensus 122 ~~al~~a~~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~ 196 (427)
T 3fq8_A 122 MAVLRIMRAYTGRDKIIKFEGCYHGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYN-----DLEAVKALFAEN 196 (427)
T ss_dssp HHHHHHHHHHHCCCEEEEEETCCCCSCGGGCSSCCTHHHHHTCCSCSSSCHHHHTTEEEEETT-----CHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCEEEEECCCcCCCCHHHHHhcCCcccccCCCCCCCCCCcccCceeecCCC-----CHHHHHHHHHhC
Confidence 99995431 345788876655544322111100 0000 0012333333 899999999864
Q ss_pred --CCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC
Q psy13354 166 --KPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP 234 (1342)
Q Consensus 166 --~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp 234 (1342)
+++++++.+.+++ ...+ +++|.++|++||++||+||+|. |+ ..+... .... ..|++ |+||++++.
T Consensus 197 ~~~~~~vi~~p~~~~~G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~-g~-~~g~~~~~~~~~~~~di~--t~sK~~~~G 272 (427)
T 3fq8_A 197 PGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVIT-GF-RIAYGGVQEKFGVTPDLT--TLGKIIGGG 272 (427)
T ss_dssp TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHTTCEEEEECTTT-BT-TTBTTHHHHHTTCCCSEE--EECGGGGTT
T ss_pred CCCEEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-cc-ccCcchhhHhcCCCCChh--hhhhhhhCC
Confidence 4567777654443 2334 9999999999999999999997 33 211110 0011 14654 566999532
Q ss_pred -CeeEEEEechhHHHHhhccCCccccC-CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEee
Q psy13354 235 -RGGFILMKKKYKKIINSAVFPGIQGG-PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 235 -~GG~iv~~~~l~~~l~~~~~~~~~~~-~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~ 308 (1342)
..|++++++++++.+.........++ ..++..++++.+..+...+ +.+.+++.++.+++++.|.+. ++....
T Consensus 273 ~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 350 (427)
T 3fq8_A 273 LPVGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQ--PGTYEYLDQITKRLSDGLLAIAQETGHAACG 350 (427)
T ss_dssp SSCEEEEECHHHHTTBTTTSSBCCCCTTTTCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred cceEEEEEcHHHHHhhccCCCccccCCCCcCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCCeEE
Confidence 23999999998887764211111111 1133444444444444322 245667777777777777653 332211
Q ss_pred CCCCCeEEEEEccCCCCC-------------HHHHHHHHHHCCceeeec
Q psy13354 309 GGTKSHIILVDLRNKKIT-------------GKIAESILESANIICNKN 344 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~~~~-------------~~~~~~ll~~~GI~v~~~ 344 (1342)
...+.++++.+...... .++...+++ +||.+.+.
T Consensus 351 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gi~v~~~ 397 (427)
T 3fq8_A 351 -GQVSGMFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLE-QGIYLAPS 397 (427)
T ss_dssp -EEETTEEEEESSSCCCCSHHHHTTSCHHHHHHHHHHHHH-TTEECCSS
T ss_pred -EEeeeEEEEEEecCccccccccccccHHHHHHHHHHHHH-CCcEEecC
Confidence 12356778877653221 345555555 59999854
No 277
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}
Probab=99.52 E-value=3.2e-13 Score=163.66 Aligned_cols=293 Identities=13% Similarity=0.056 Sum_probs=163.8
Q ss_pred CceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHH
Q psy13354 28 NNIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQAN 102 (1342)
Q Consensus 28 ~~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~ 102 (1342)
..|.+.++. +. .+|.+.+++.+.+......+ + .. +...+++++++++++..+.+++++||++|+
T Consensus 54 ~ylD~~~~~~~~~lG~~~p~v~~A~~~~~~~~~~~~------~-~~----~~~~~la~~l~~~~~~~~~v~~~~sGsea~ 122 (429)
T 4e77_A 54 AYIDYVGSWGPMILGHNHPAIRQAVIEAVERGLSFG------A-PT----EMEVKMAQLVTDLVPTMDMVRMVNSGTEAT 122 (429)
T ss_dssp EEEESSGGGTTCTTCBTCHHHHHHHHHHHTTCSCCS------S-CC----HHHHHHHHHHHHHSTTCSEEEEESSHHHHH
T ss_pred EEEECCCchhccccCCCCHHHHHHHHHHHHhCcccC------C-CC----HHHHHHHHHHHhhCCCCCEEEEeCcHHHHH
Confidence 346555553 22 36789999988875321111 1 12 344455668888886445566666999999
Q ss_pred HHHHHHcc--CCCCEEEEeeccCCccchhhHHh-----------hhCCc----eeEEEEecCCCCCCCCHHHHHHHHHhc
Q psy13354 103 QAVFFSVL--NPGDTIMGMSLQEGGHLTHGMML-----------NMSGK----WFNSICYGLNKKEKIDYKKVEYLAKKN 165 (1342)
Q Consensus 103 ~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~~-----------~~~g~----~~~~v~~~~~~~~~id~e~Le~~i~~~ 165 (1342)
..++.... .+++.|++....+.+........ ...+. ......++.+ |++++++++++.
T Consensus 123 ~~al~~a~~~~~~~~ii~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~ 197 (429)
T 4e77_A 123 MSAIRLARGYTGRDKIIKFEGCYHGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYN-----DLASVRQAFEQY 197 (429)
T ss_dssp HHHHHHHHHHHCCCEEEEETTCCCC------------------CCCTTSCGGGGTTEEEECTT-----CHHHHHHHHHHS
T ss_pred HHHHHHHHHhhCCCEEEEEcCccCCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCC-----CHHHHHHHHHhc
Confidence 99998643 35677777654443332110000 00010 0012222322 899999999863
Q ss_pred --CCeEEEEcCCCCC--cccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCC--CCCC-CCcEEEecCCccCCCC
Q psy13354 166 --KPKLIIAGASAYS--QYID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYP--NPVP-FADFITSTTHKSLRGP 234 (1342)
Q Consensus 166 --~~~liv~~~s~~~--~~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~--~~l~-~~Divv~S~sK~l~gp 234 (1342)
+.++|++.+.+++ ...+ +++|.++|++||++||+||+|. |+ ..+... .... ..|++ |+||+++++
T Consensus 198 ~~~~~~vi~ep~~~~~g~~~~~~~~l~~l~~l~~~~~~lli~DEv~~-g~-r~g~~~~~~~~~~~pdi~--t~sK~~~~G 273 (429)
T 4e77_A 198 PQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMT-GF-RVALAGAQDYYHVIPDLT--CLGKIIGGG 273 (429)
T ss_dssp TTTEEEEEECSSBCTTSCBCCCTTHHHHHHHHHHHHTCEEEEEETTT-BT-TTBTTCHHHHTTCCCSEE--EEEGGGGTT
T ss_pred CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecccc-Cc-ccCcchHHHhcCCCCCee--eecccccCC
Confidence 3456666443332 2234 9999999999999999999997 22 111111 0111 24765 667999532
Q ss_pred -CeeEEEEechhHHHHhhccCCccccC-CcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----CCcEEee
Q psy13354 235 -RGGFILMKKKYKKIINSAVFPGIQGG-PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ----RGIRIVS 308 (1342)
Q Consensus 235 -~GG~iv~~~~l~~~l~~~~~~~~~~~-~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~----~g~~~~~ 308 (1342)
..|++++++++++.+.........++ ..++..++++.+..+.+.+ +++.+++.++.+++++.|.+ .++....
T Consensus 274 ~~~G~~~~~~~~~~~l~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 351 (429)
T 4e77_A 274 MPVGAFGGRREVMNALAPTGPVYQAGTLSGNPIAMAAGFACLTEISQ--VGVYETLTELTDSLATGLRHAAKEENIPLVV 351 (429)
T ss_dssp SCCEEEEECHHHHTTBTTTSSBCC--CCCCCHHHHHHHHHHHHHHTS--TTHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred CCeEEEEECHHHHHHhccCCCccccCCCCCCHHHHHHHHHHHHHHHh--cCHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 33999999988887765311111111 2233444444444444321 23556677777777777765 3443222
Q ss_pred CCCCCeEEEEEccCCCC--------------CHHHHHHHHHHCCceeeec
Q psy13354 309 GGTKSHIILVDLRNKKI--------------TGKIAESILESANIICNKN 344 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~~~--------------~~~~~~~ll~~~GI~v~~~ 344 (1342)
...+.++++.+..... ..++...++++ ||.+.+.
T Consensus 352 -~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~ 399 (429)
T 4e77_A 352 -NHVGGMFGLFFTNADTVTCYQDVMNCDVERFKRFFHLMLEE-GVYLAPS 399 (429)
T ss_dssp -EEETTEEEEECCSSSCCCSHHHHHTSCHHHHHHHHHHHHHT-TEECCSS
T ss_pred -EEeeeEEEEEEccCcccccccccccccHHHHHHHHHHHHHC-CeEEeec
Confidence 1245678888765310 14566666655 9998864
No 278
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.51 E-value=9.6e-14 Score=161.68 Aligned_cols=188 Identities=14% Similarity=0.167 Sum_probs=135.6
Q ss_pred CCCccccc-c--chhhHHHHHHHHHcCC-CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 387 PSNFNTLI-G--QNHISKSLINALDKKR-LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 387 p~~f~~lv-G--q~~~~~~L~~~l~~~~-~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
..+|++++ | +..+...+...+.... .++.++|+||+|+|||++++.+++.+...+
T Consensus 7 ~~~f~~fv~g~~~~~a~~~~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~--------------------- 65 (324)
T 1l8q_A 7 KYTLENFIVGEGNRLAYEVVKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRG--------------------- 65 (324)
T ss_dssp TCCSSSCCCCTTTHHHHHHHHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTT---------------------
T ss_pred CCCcccCCCCCcHHHHHHHHHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCC---------------------
Confidence 34788887 5 4555667777776643 456699999999999999999999985320
Q ss_pred ccCCCccEEEEccCCCcCHHHHHHHHHHHhhc------CccCCceEEEeccCccCCH--HHHHHHHHhhcCC-CCcEEEE
Q psy13354 463 DNGCFMDYIEMDAASTRGINEMAQLLEQTIYA------PINARYKIYVIDEVHMLTH--HAFNAMLKTLEEP-PKYIKFI 533 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~------p~~~~~rvviIDE~~~L~~--~~~~~Ll~~Le~p-~~~~vlI 533 (1342)
..++.+++... ..++....... .......+++|||++.+.. ..++.|+.+++.. .....+|
T Consensus 66 -----~~~~~i~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~ii 135 (324)
T 1l8q_A 66 -----YRVIYSSADDF-----AQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQII 135 (324)
T ss_dssp -----CCEEEEEHHHH-----HHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEE
T ss_pred -----CEEEEEEHHHH-----HHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEE
Confidence 13444544321 11111111100 0112356999999999874 5666777766532 1233456
Q ss_pred EEeCCCC----CChHHHhccE---EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHHHHHHh
Q psy13354 534 LATTEPQ----KIPITVLSRC---IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606 (1342)
Q Consensus 534 l~t~~~~----kl~~~L~sR~---~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L~kl~~ 606 (1342)
++++.+. .+.+++.+|+ .++++++ +.++...++...++..++.++++++++|++.+ ||+|.+.+.++++..
T Consensus 136 i~~~~~~~~l~~l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g~~r~l~~~l~~~~~ 213 (324)
T 1l8q_A 136 LASDRHPQKLDGVSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKL 213 (324)
T ss_dssp EEESSCGGGCTTSCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-SSHHHHHHHHHHHHH
T ss_pred EEecCChHHHHHhhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-CCHHHHHHHHHHHHH
Confidence 6665432 5778999999 8899999 99999999999999999999999999999999 999999999999887
Q ss_pred h
Q psy13354 607 Y 607 (1342)
Q Consensus 607 ~ 607 (1342)
+
T Consensus 214 ~ 214 (324)
T 1l8q_A 214 K 214 (324)
T ss_dssp H
T ss_pred c
Confidence 7
No 279
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.51 E-value=2.1e-13 Score=159.30 Aligned_cols=219 Identities=14% Similarity=0.140 Sum_probs=151.5
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|.++++|..+++++||+++++.+..++..+ +.+||+||||+|||++|+.+++.+++.. ....|.....
T Consensus 15 ~~~~~~~~~~~~~~i~g~~~~~~~l~~~l~~~---~~vll~G~pGtGKT~la~~la~~~~~~~-------~~i~~~~~~~ 84 (331)
T 2r44_A 15 RNKIKEVIDEVGKVVVGQKYMINRLLIGICTG---GHILLEGVPGLAKTLSVNTLAKTMDLDF-------HRIQFTPDLL 84 (331)
T ss_dssp HHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHT---CCEEEESCCCHHHHHHHHHHHHHTTCCE-------EEEECCTTCC
T ss_pred HHHHHHHHHHhccceeCcHHHHHHHHHHHHcC---CeEEEECCCCCcHHHHHHHHHHHhCCCe-------EEEecCCCCC
Confidence 46899999999999999999999999998876 3589999999999999999999886310 0111110000
Q ss_pred hhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-----------C
Q psy13354 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-----------P 527 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-----------~ 527 (1342)
...+.. ...++... +. + .....+.+ ..+++|||++.++.+.++.|++.+++. +
T Consensus 85 ~~~l~g-----~~~~~~~~--~~--~-----~~~~g~l~--~~vl~iDEi~~~~~~~~~~Ll~~l~~~~~~~~g~~~~~~ 148 (331)
T 2r44_A 85 PSDLIG-----TMIYNQHK--GN--F-----EVKKGPVF--SNFILADEVNRSPAKVQSALLECMQEKQVTIGDTTYPLD 148 (331)
T ss_dssp HHHHHE-----EEEEETTT--TE--E-----EEEECTTC--SSEEEEETGGGSCHHHHHHHHHHHHHSEEEETTEEEECC
T ss_pred hhhcCC-----ceeecCCC--Cc--e-----EeccCccc--ccEEEEEccccCCHHHHHHHHHHHhcCceeeCCEEEECC
Confidence 000000 00000000 00 0 00001111 259999999999999999999998853 4
Q ss_pred CcEEEEEEeCCCC-----CChHHHhccEE-EEEEcCCCHHHHHHHHHHHHHhc----------------------CCCcc
Q psy13354 528 KYIKFILATTEPQ-----KIPITVLSRCI-QFNLKKMLHHDIVNNLCYILNKE----------------------NIKFE 579 (1342)
Q Consensus 528 ~~~vlIl~t~~~~-----kl~~~L~sR~~-~i~~~~l~~~el~~~l~~~~~~~----------------------g~~i~ 579 (1342)
..+++|.++|..+ .+.+++.+||. .+.+.+|+.++..++++..+... ++.++
T Consensus 149 ~~~~viat~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~ 228 (331)
T 2r44_A 149 NPFLVLATQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTIS 228 (331)
T ss_dssp SSCEEEEEECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCC
T ss_pred CCEEEEEecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCC
Confidence 4555665555322 37899999994 69999999999999998887652 77899
Q ss_pred hhHHHHHHHhc--------------------CCcHHHHHHHHHHHHhhc---C-CCCCHHHHHHHhcc
Q psy13354 580 TSALNLIATGA--------------------QGSMRDALSLTDQAINYS---S-EKITLNSMQEMLSI 623 (1342)
Q Consensus 580 ~~al~~La~~~--------------------~g~lr~a~~~L~kl~~~~---~-~~It~e~V~~~v~~ 623 (1342)
+++++++++.+ +.++|.+.+++..+..++ + ..|+.++|.+++..
T Consensus 229 ~~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 229 ESLEKYIIELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp HHHHHHHHHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 99999998754 227999998887655443 2 34999999887743
No 280
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.50 E-value=4.4e-13 Score=159.53 Aligned_cols=237 Identities=15% Similarity=0.127 Sum_probs=158.2
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHc---CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDK---KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~---~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
++..+|.| ++++|++..++.+.+.+.. +..++.++|+||+|+|||++++.+++.+...... .....+..|..+
T Consensus 12 ~l~~~~~p---~~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~-~~~~~~i~~~~~ 87 (386)
T 2qby_A 12 YLLPDYIP---DELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLG-KFKHVYINTRQI 87 (386)
T ss_dssp GGSSSCCC---SCCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCS-SCEEEEEEHHHH
T ss_pred hCCCccCC---CCCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcC-CceEEEEECCCC
Confidence 45566776 7789999999999998874 5556779999999999999999999988532100 001111222211
Q ss_pred cchhhhccCCCccEEEEcc-CCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCC----HHHHHHHHHhhcC-CCCc
Q psy13354 457 SVCVKIDNGCFMDYIEMDA-ASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLT----HHAFNAMLKTLEE-PPKY 529 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~-~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~----~~~~~~Ll~~Le~-p~~~ 529 (1342)
.....+.......+ .... ........ +..+.+.+.. .+.+.+|+|||++.+. .+....|++.+++ +...
T Consensus 88 ~~~~~~~~~i~~~l-~~~~~~~~~~~~~~~~~l~~~l~~---~~~~~vlilDE~~~l~~~~~~~~l~~l~~~~~~~~~~~ 163 (386)
T 2qby_A 88 DTPYRVLADLLESL-DVKVPFTGLSIAELYRRLVKAVRD---YGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSK 163 (386)
T ss_dssp CSHHHHHHHHTTTT-SCCCCSSSCCHHHHHHHHHHHHHT---CCSCEEEEEETHHHHHHSSCSTHHHHHHHHHHSCCC--
T ss_pred CCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHhc---cCCeEEEEEcChhhhhccCcCHHHHHHhhchhhcCCCe
Confidence 11111000000000 0000 01111233 3333333322 2346799999999874 3456677777765 3457
Q ss_pred EEEEEEeCCCC---CChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHhc--CCCcchhHHHHHHHhcC---CcHHHHHH
Q psy13354 530 IKFILATTEPQ---KIPITVLSRC--IQFNLKKMLHHDIVNNLCYILNKE--NIKFETSALNLIATGAQ---GSMRDALS 599 (1342)
Q Consensus 530 ~vlIl~t~~~~---kl~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~~--g~~i~~~al~~La~~~~---g~lr~a~~ 599 (1342)
+.+|++++..+ .+.+.+.+|+ ..+.|++++.+++.+++..++... ...+++++++.+++.++ |++|.+++
T Consensus 164 ~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ 243 (386)
T 2qby_A 164 ISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALD 243 (386)
T ss_dssp EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred EEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHH
Confidence 88899988763 5667888998 799999999999999999988753 36789999999999998 99999999
Q ss_pred HHHHHHhhc----CCCCCHHHHHHHhccC
Q psy13354 600 LTDQAINYS----SEKITLNSMQEMLSII 624 (1342)
Q Consensus 600 ~L~kl~~~~----~~~It~e~V~~~v~~~ 624 (1342)
.++.+...+ ...|+.++|++++...
T Consensus 244 ll~~a~~~a~~~~~~~i~~~~v~~a~~~~ 272 (386)
T 2qby_A 244 LLRVSGEIAERMKDTKVKEEYVYMAKEEI 272 (386)
T ss_dssp HHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCccCHHHHHHHHHHH
Confidence 999877654 2469999999887553
No 281
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Probab=99.49 E-value=5e-13 Score=162.93 Aligned_cols=299 Identities=9% Similarity=0.065 Sum_probs=172.9
Q ss_pred CcHHHH-H-HHhH---HHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhC--CCCceEecCCHHHHHHHHHHHcc-
Q psy13354 39 TSLAVM-E-AQGT---LLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFN--AEAANVQPHSGSQANQAVFFSVL- 110 (1342)
Q Consensus 39 l~~~v~-e-al~~---~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g--~~~~vi~~~sGs~A~~~al~al~- 110 (1342)
.+|.+. + |+.+ .+.. .. .+. .. + .. +...++++.++++++ ..+.+++++||++|+..++..+.
T Consensus 71 ~~p~v~~~~A~~~~~~~~~~-~~-~~~-~~-~-~~----~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~ 141 (449)
T 2cjg_A 71 NPPALVDDREFHAELMQAAL-NK-PSN-SD-V-YS----VAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFD 141 (449)
T ss_dssp SCHHHHTCHHHHHHHHHHHT-CC-CCT-TT-C-CC----HHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHh-cC-CCC-cc-c-CC----HHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHH
Confidence 467899 8 9888 5532 21 111 11 1 12 333445558888885 23456666699999999997542
Q ss_pred --C----------C-CCEEEEeeccCCccchhhHHhh------hCCc---eeEEEEecCCC--CC--------CCCHHHH
Q psy13354 111 --N----------P-GDTIMGMSLQEGGHLTHGMMLN------MSGK---WFNSICYGLNK--KE--------KIDYKKV 158 (1342)
Q Consensus 111 --~----------p-GD~Vlv~~~~~~~~~s~~~~~~------~~g~---~~~~v~~~~~~--~~--------~id~e~L 158 (1342)
. | ||+|++....+.++...+.... ..+. ...++.++.++ .. ..+++++
T Consensus 142 ~~~~~~~~~~~~~~~~~~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~l 221 (449)
T 2cjg_A 142 WKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQA 221 (449)
T ss_dssp HHHHHHHHTTSCTTCCCEEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHH
T ss_pred HhcccccccccccCCCCEEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHH
Confidence 2 2 8999988766655433221110 1111 01334444443 11 2456678
Q ss_pred HHHHHh--cCCeEEEEcCCCCC-c-ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecC
Q psy13354 159 EYLAKK--NKPKLIIAGASAYS-Q-YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTT 227 (1342)
Q Consensus 159 e~~i~~--~~~~liv~~~s~~~-~-~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~ 227 (1342)
++.+.+ .++++|++.+.+++ + ..+ +++|.++|++||++||+||+|. |....+.... ..+ ..|++ ++
T Consensus 222 e~~i~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~-g~g~~g~~~~~~~~~~~~di~--t~ 298 (449)
T 2cjg_A 222 RAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQT-GCGLTGTAWAYQQLDVAPDIV--AF 298 (449)
T ss_dssp HHHHHHSTTTEEEEEECSEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTT-TTTTTSSSSTHHHHTCCCSEE--EE
T ss_pred HHHHHhcCCceEEEEEeCcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEecccc-CCCccCcceeecccCCCceEE--Ee
Confidence 888863 34566776554333 4 345 9999999999999999999997 2211122111 111 24766 56
Q ss_pred CccCCCCCeeEEEEechhHHHHhh-----ccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 228 HKSLRGPRGGFILMKKKYKKIINS-----AVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 228 sK~l~gp~GG~iv~~~~l~~~l~~-----~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
||++ + -|++++++++++.+.. ......++ .+...++|+.+++ +...+ +.+.+++.++++++.+.|.+.
T Consensus 299 sK~l--~-iG~~~~~~~~~~~l~~~~~~~~~~~~t~~-~n~~~~~aa~aal-~~~~~--~~~~~~~~~~~~~l~~~L~~l 371 (449)
T 2cjg_A 299 GKKT--Q-VCGVMAGRRVDEVADNVFAVPSRLNSTWG-GNLTDMVRARRIL-EVIEA--EGLFERAVQHGKYLRARLDEL 371 (449)
T ss_dssp CGGG--S-SEEEEECGGGGGSTTCTTTSTTSSCCSSS-SCHHHHHHHHHHH-HHHHH--HTHHHHHHHHHHHHHHHHHHH
T ss_pred cCcc--c-EEEEEECHHHhhhhhhcccCCcccccCCC-CCHHHHHHHHHHH-HHHHh--ccHHHHHHHHHHHHHHHHHHH
Confidence 7999 4 4677788888765321 11222222 2344444444444 33321 345678888899999888763
Q ss_pred ----C--cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccccccc
Q psy13354 303 ----G--IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369 (1342)
Q Consensus 303 ----g--~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t~ 369 (1342)
+ +.... ..+.+++++++......++...+++ +||.+.+.. .+.+|++++..++.
T Consensus 372 ~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~v~~~g----------~~~iRi~~~~~~t~ 431 (449)
T 2cjg_A 372 AADFPAVVLDPR--GRGLMCAFSLPTTADRDELIRQLWQ-RAVIVLPAG----------ADTVRFRPPLTVST 431 (449)
T ss_dssp HHHSTTTSEEEE--EETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET----------TTEEEECCCTTCCH
T ss_pred HhhCCCceeeEe--eccEEEEEEECChHHHHHHHHHHHH-CCeEEecCC----------CCEEEEECCCCCCH
Confidence 2 33222 2355777887643224467777775 699998751 25699987766553
No 282
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.49 E-value=4.4e-13 Score=154.23 Aligned_cols=191 Identities=18% Similarity=0.259 Sum_probs=140.6
Q ss_pred ccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 384 KYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 384 k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
+..+.+|++++|++.+++.|.+.+.. -..+..+||+||+|||||++|+++++.+.+
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~------------ 75 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA------------ 75 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTC------------
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCC------------
Confidence 45677899999999999999988753 245678999999999999999999998863
Q ss_pred CCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH-----------
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----------- 514 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----------- 514 (1342)
.++.++++. ......++.+++.+... .+.+++|||++.+...
T Consensus 76 -----------------~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~~~----~p~il~iDEid~l~~~~~~~~~~~~~~ 134 (301)
T 3cf0_A 76 -----------------NFISIKGPELLTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGA 134 (301)
T ss_dssp -----------------EEEEECHHHHHHHHHTTCTTHHHHHHHHHHHT----CSEEEEECSTTHHHHHHTTTTCCSSCS
T ss_pred -----------------CEEEEEhHHHHhhhcCchHHHHHHHHHHHHhc----CCeEEEEEChHHHhhccCCCcCCcchH
Confidence 233333221 01123455666655432 3469999999977432
Q ss_pred ---HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHH
Q psy13354 515 ---AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586 (1342)
Q Consensus 515 ---~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~L 586 (1342)
..+.|+..++. ...++++|++||.++.+.+++.+ |+ ..+.++.|+.++..++++..+++.+.. .+..++.+
T Consensus 135 ~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~l 213 (301)
T 3cf0_A 135 ADRVINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFL 213 (301)
T ss_dssp CCHHHHHHHHHHHSSCTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHH
Confidence 35788888874 34578899999999999999887 77 789999999999999999998877653 23346677
Q ss_pred HHhcCC-cHHHHHHHHHHHHhhc
Q psy13354 587 ATGAQG-SMRDALSLTDQAINYS 608 (1342)
Q Consensus 587 a~~~~g-~lr~a~~~L~kl~~~~ 608 (1342)
+..+.| +-+++.+++++++..+
T Consensus 214 a~~~~g~sg~dl~~l~~~a~~~a 236 (301)
T 3cf0_A 214 AKMTNGFSGADLTEICQRACKLA 236 (301)
T ss_dssp HHTCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHcCCCCHHHHHHHHHHHHHHH
Confidence 777654 4557777777665543
No 283
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.49 E-value=8e-14 Score=159.40 Aligned_cols=201 Identities=14% Similarity=0.137 Sum_probs=136.4
Q ss_pred hhccCCCCccccccchhhHHHHHHHH----HcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINAL----DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l----~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
-.-|.|..+ |+|++..++.+...+ ..+ .+++++|+||||||||++++.+++.+........
T Consensus 13 ~~~~~~~~~--L~~Re~E~~~i~~~L~~~i~~~-~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~------------ 77 (318)
T 3te6_A 13 RESLQKREL--LKSQVEDFTRIFLPIYDSLMSS-QNKLFYITNADDSTKFQLVNDVMDELITSSARKE------------ 77 (318)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTT-CCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTS------------
T ss_pred hhccCCccc--cCCHHHHHHHHHHHHHHHhcCC-CCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhcc------------
Confidence 334555333 788777776665554 444 4566899999999999999999999963211000
Q ss_pred chhhhccCCCccEEEEccCCCc----------------------CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHH
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTR----------------------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA 515 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~----------------------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~ 515 (1342)
.....++.+|+.... ..+.++.++.... ...+...||++||+|.|. .
T Consensus 78 -------~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~--~~~~~~~ii~lDE~d~l~--~ 146 (318)
T 3te6_A 78 -------LPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFYITNVP--KAKKRKTLILIQNPENLL--S 146 (318)
T ss_dssp -------SCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSC--GGGSCEEEEEEECCSSSC--C
T ss_pred -------CCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhh--hccCCceEEEEecHHHhh--c
Confidence 001123444432211 1223333333320 012345699999999987 4
Q ss_pred HHHHHHhhc---CCCCcEEEEEEeCCCCC----ChHHHhccE--EEEEEcCCCHHHHHHHHHHHHHhcC-----------
Q psy13354 516 FNAMLKTLE---EPPKYIKFILATTEPQK----IPITVLSRC--IQFNLKKMLHHDIVNNLCYILNKEN----------- 575 (1342)
Q Consensus 516 ~~~Ll~~Le---~p~~~~vlIl~t~~~~k----l~~~L~sR~--~~i~~~~l~~~el~~~l~~~~~~~g----------- 575 (1342)
++.|+.+++ .....+++|+++|..+- +.++++||+ ..+.|+|++.+++.++++.+++...
T Consensus 147 q~~L~~l~~~~~~~~s~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~ 226 (318)
T 3te6_A 147 EKILQYFEKWISSKNSKLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKK 226 (318)
T ss_dssp THHHHHHHHHHHCSSCCEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTC
T ss_pred chHHHHHHhcccccCCcEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccc
Confidence 456665554 45567889999887753 344678887 7899999999999999999998742
Q ss_pred ------------------------CCcchhHHHHHHH---hcCCcHHHHHHHHHHHHhhc
Q psy13354 576 ------------------------IKFETSALNLIAT---GAQGSMRDALSLTDQAINYS 608 (1342)
Q Consensus 576 ------------------------~~i~~~al~~La~---~~~g~lr~a~~~L~kl~~~~ 608 (1342)
..+++++++++|+ ...||+|.+++.|+.+...+
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ai~~~A~~vA~~~GD~R~Al~ilr~A~~~a 286 (318)
T 3te6_A 227 EMTIYNNIREGQNQKIPDNVIVINHKINNKITQLIAKNVANVSGSTEKAFKICEAAVEIS 286 (318)
T ss_dssp CEEECCCC--------CTTEEEECEECCHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccCHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHH
Confidence 1479999999999 57999999999999988765
No 284
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.48 E-value=1.1e-13 Score=159.92 Aligned_cols=201 Identities=17% Similarity=0.253 Sum_probs=140.0
Q ss_pred ccccccchhhHHHHHHHHHcCC--------CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhh
Q psy13354 390 FNTLIGQNHISKSLINALDKKR--------LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l~~~~--------~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
.++++||+.+++.+...+..+. ..+.++|+||+|||||++|+.+++.+.+.. .......|..+..+..
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~----~~~~~~~~~~~~~~~~ 91 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE----EAMIRIDMTEYMEKHA 91 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCG----GGEEEEEGGGCCSTTH
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCC----cceEEeeccccccccc
Confidence 3568999999999988887642 235799999999999999999999986421 0111122222222111
Q ss_pred hcc--CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------C
Q psy13354 462 IDN--GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-----------K 528 (1342)
Q Consensus 462 ~~~--~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-----------~ 528 (1342)
... +..+. ..+......+.+..... ...+++|||++.++.+.++.|++.+++.. .
T Consensus 92 ~~~l~g~~~~--------~~~~~~~~~~~~~~~~~----~~~vl~lDEi~~l~~~~~~~Ll~~le~~~~~~~~~~~~~~~ 159 (311)
T 4fcw_A 92 VSRLIGAPPG--------YVGYEEGGQLTEAVRRR----PYSVILFDAIEKAHPDVFNILLQMLDDGRLTDSHGRTVDFR 159 (311)
T ss_dssp HHHHHCCCTT--------STTTTTCCHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEECTTSCEEECT
T ss_pred HHHhcCCCCc--------cccccccchHHHHHHhC----CCeEEEEeChhhcCHHHHHHHHHHHhcCEEEcCCCCEEECC
Confidence 100 00000 00000001122222222 24699999999999999999999998753 3
Q ss_pred cEEEEEEeCC--------------------------CCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc-------
Q psy13354 529 YIKFILATTE--------------------------PQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE------- 574 (1342)
Q Consensus 529 ~~vlIl~t~~--------------------------~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~------- 574 (1342)
++++|+++|. ...+.+++.+|+ .++.|.|++.+++..++...+++.
T Consensus 160 ~~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~ 239 (311)
T 4fcw_A 160 NTVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEK 239 (311)
T ss_dssp TEEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTT
T ss_pred CcEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhC
Confidence 6778999887 335667899999 899999999999999998877652
Q ss_pred --CCCcchhHHHHHHHhc---CCcHHHHHHHHHHHHh
Q psy13354 575 --NIKFETSALNLIATGA---QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 575 --g~~i~~~al~~La~~~---~g~lr~a~~~L~kl~~ 606 (1342)
...+++++++.|++.. .|+.|.+.+.+++++.
T Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~ 276 (311)
T 4fcw_A 240 RISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 276 (311)
T ss_dssp TCEEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHHTH
T ss_pred CcEEEeCHHHHHHHHHhCCCccCCchhHHHHHHHHHH
Confidence 4568999999999975 5999999999987654
No 285
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}
Probab=99.47 E-value=4.1e-13 Score=162.36 Aligned_cols=291 Identities=13% Similarity=0.050 Sum_probs=168.8
Q ss_pred ceeeeecC--CC---CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHH
Q psy13354 29 NIELIASE--NY---TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQ 103 (1342)
Q Consensus 29 ~i~l~a~~--n~---l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~ 103 (1342)
.|.+.++. ++ .+|.+.+++.+.+.. . ..+ ++. .++..+++++++++++..+.+++++||++|+.
T Consensus 54 ~iD~~~~~~~~~lG~~~p~v~~a~~~~~~~-~-~~~------~~~---~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~ 122 (424)
T 2e7u_A 54 YLDYVMSWGPLILGHAHPKVLARVRETLER-G-LTF------GAP---SPLEVALAKKVKRAYPFVDLVRFVNSGTEATM 122 (424)
T ss_dssp EEESSGGGTTCTTCBTCHHHHHHHHHHHHT-C-SCC------SSC---CHHHHHHHHHHHHHCTTCCEEEEESSHHHHHH
T ss_pred EEEccccccccccCCCCHHHHHHHHHHHHh-C-CCC------CCC---CHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHH
Confidence 45655553 33 467799999888853 1 111 111 14455566688888842244555559999999
Q ss_pred HHHHH---ccCCCCEEEEeeccCCccchhhHHh-----------hhCCce----eEEEEecCCCCCCCCHHHHHHHHHh-
Q psy13354 104 AVFFS---VLNPGDTIMGMSLQEGGHLTHGMML-----------NMSGKW----FNSICYGLNKKEKIDYKKVEYLAKK- 164 (1342)
Q Consensus 104 ~al~a---l~~pGD~Vlv~~~~~~~~~s~~~~~-----------~~~g~~----~~~v~~~~~~~~~id~e~Le~~i~~- 164 (1342)
.++.+ +.+ ++.|++.+..+.++....... ...|.. ..++.++.+ |++++++.+++
T Consensus 123 ~al~~ar~~~~-~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~-----d~~~le~~l~~~ 196 (424)
T 2e7u_A 123 SALRLARGYTG-RPYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYN-----DPEGLREVLKRR 196 (424)
T ss_dssp HHHHHHHHHHC-CCEEEEETTCCCCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTT-----CHHHHHHHHHHH
T ss_pred HHHHHHHHhhC-CCEEEEECCCcCCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCC-----CHHHHHHHHHhC
Confidence 99986 444 577777665554432211100 011210 123334443 89999998874
Q ss_pred -cCCeEEEEcCCCC-Cc-ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-
Q psy13354 165 -NKPKLIIAGASAY-SQ-YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG- 233 (1342)
Q Consensus 165 -~~~~liv~~~s~~-~~-~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g- 233 (1342)
.++++|++.+.+. ++ ..+ +++|.++ ++||++||+||+|+ |+. .+.... ... ..|++ |+||++++
T Consensus 197 ~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l-~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G 271 (424)
T 2e7u_A 197 GEEIAAIIFEPVVGNAGVLVPTEDFLKALHEA-KAYGVLLIADEVMT-GFR-LAFGGATELLGLKPDLV--TLGKILGGG 271 (424)
T ss_dssp GGGEEEEEECSSBCTTSCBCCCHHHHHHHHHG-GGGTCEEEEECTTT-TTT-SSTTHHHHHHTCCCSEE--EECGGGGTT
T ss_pred CCCEEEEEEeCCCCCCCCcCCCHHHHHHHHHH-HHcCCEEEEecCcc-ccc-cchhHHHHHhCCCcchh--hhhhhhhCC
Confidence 3456666654333 23 345 9999999 99999999999997 432 121100 011 24765 77899953
Q ss_pred CCeeEEEEechhHHHHhhccCCcc-ccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----CcEEee
Q psy13354 234 PRGGFILMKKKYKKIINSAVFPGI-QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 234 p~GG~iv~~~~l~~~l~~~~~~~~-~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~ 308 (1342)
...|++++++++++.+......+. .+...++...+++.+..+...+ .+++.+++.++++++.+.|.+. ++....
T Consensus 272 ~~~G~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~ 350 (424)
T 2e7u_A 272 LPAAAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE-NPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV 350 (424)
T ss_dssp SSCEEEEECHHHHTTBTTTSSBCCCCTTCSCHHHHHHHHHHHHHHHH-CTHHHHHHHHHHHHHHHHHHHHHHHTTCCCEE
T ss_pred cceEEEEEcHHHHhhhcccCCcccCCCCCCCHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHhCCCceEE
Confidence 234999999988877765211111 1112233444444444444322 1456788888888888888764 543111
Q ss_pred CCCCCeEEEEEccCCC-------------CCHHHHHHHHHHCCceeeec
Q psy13354 309 GGTKSHIILVDLRNKK-------------ITGKIAESILESANIICNKN 344 (1342)
Q Consensus 309 ~~~~~~~v~i~~~~~~-------------~~~~~~~~ll~~~GI~v~~~ 344 (1342)
. ..+.++|+.++... ...++...++ ++||.+.+.
T Consensus 351 ~-~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~Gv~v~~~ 397 (424)
T 2e7u_A 351 N-RVGSMITVFFTEGPVVTFQDARRTDTELFKRFFHGLL-DRGIYWPPS 397 (424)
T ss_dssp E-EETTEEEEESSSSCCCSHHHHTTSCHHHHHHHHHHHH-TTTEECCSS
T ss_pred E-eeceEEEEEEeCCCCcchhhhcccCHHHHHHHHHHHH-HCCeEEecc
Confidence 1 23568898886421 1234555565 569999864
No 286
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}
Probab=99.46 E-value=9.7e-13 Score=160.56 Aligned_cols=276 Identities=12% Similarity=0.072 Sum_probs=157.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHH---ccCCCCE
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFS---VLNPGDT 115 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~a---l~~pGD~ 115 (1342)
.+|.+.+++.+.+.. . ..+ ++ ..+++.++++++++.++..+.+++++||++|+..++.+ +.++ +.
T Consensus 74 ~~~~v~~a~~~~~~~-~-~~~------~~---~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~~~~-~~ 141 (453)
T 2cy8_A 74 GHPRVNAAIAEALSH-G-VQY------AA---SHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAFTGR-RM 141 (453)
T ss_dssp TCHHHHHHHHHHHTT-T-CSS------CS---SCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHHHCC-CE
T ss_pred CCHHHHHHHHHHHHh-C-CCC------CC---CCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHhhCC-CE
Confidence 467799998888743 1 111 11 23677778889988885334555666999999999998 5554 67
Q ss_pred EEEeeccCCccchhhHH--------hhhCCce----eEEEEecCCCCCCCCHHHHHHHHHh--cCCeEEEEcCCCCC-c-
Q psy13354 116 IMGMSLQEGGHLTHGMM--------LNMSGKW----FNSICYGLNKKEKIDYKKVEYLAKK--NKPKLIIAGASAYS-Q- 179 (1342)
Q Consensus 116 Vlv~~~~~~~~~s~~~~--------~~~~g~~----~~~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~~~s~~~-~- 179 (1342)
|++.+..+.++...... ....|.. ..++.++. .|++++++.+++ .++++|++.+.+++ +
T Consensus 142 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~ 216 (453)
T 2cy8_A 142 ILRFEGHYHGWHDFSASGYNSHFDGQPAPGVLPETTANTLLIRP-----DDIEGMREVFANHGSDIAAFIAEPVGSHFGV 216 (453)
T ss_dssp EEEECC----------------------------CGGGEEEECT-----TCHHHHHHHHHHHGGGEEEEEECSSEHHHHT
T ss_pred EEEEcCCcCCCchhhHhhcCCccCCCcCCCCCccccCceeecCC-----CCHHHHHHHHHhcCCCEEEEEECCCCCCCCC
Confidence 77666544432211100 0011221 01233333 289999998875 24566766554332 3
Q ss_pred ccC----HHHHHHHHHHcCCEEEEEcccchhhhhcCCCCC--CCC-CCcEEEecCCccCCC-CCeeEEEEechhHHHHhh
Q psy13354 180 YID----FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN--PVP-FADFITSTTHKSLRG-PRGGFILMKKKYKKIINS 251 (1342)
Q Consensus 180 ~~~----l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~--~l~-~~Divv~S~sK~l~g-p~GG~iv~~~~l~~~l~~ 251 (1342)
..+ +++|.++|++||++||+||+|+ |+. .+.... ... .+|++ |+||++++ ..+|++++++++++.+..
T Consensus 217 ~~~~~~~l~~l~~l~~~~g~~lI~DEv~~-g~~-~g~~~~~~~~~~~~di~--s~sK~l~~G~~~G~v~~~~~~~~~l~~ 292 (453)
T 2cy8_A 217 TPVSDSFLREGAELARQYGALFILDEVIS-GFR-VGNHGMQALLDVQPDLT--CLAKASAGGLPGGILGGREDVMGVLSR 292 (453)
T ss_dssp EECCHHHHHHHHHHHHHTTCEEEEECTTT-TTT-TCTTHHHHHHTCCCSEE--EEEGGGGTTSSCEEEEECHHHHTTSSS
T ss_pred cCCCHHHHHHHHHHHHHcCCEEEEecCcc-ccc-cCchhhhHHhCCCCcEE--EEChhhhCCcceEEEechHHHHHHhcc
Confidence 345 9999999999999999999997 432 221100 011 24765 67799953 344999999988777654
Q ss_pred c--c---CCccccCCcHHHHHHHHHHHHHh-ccchHHHHHHHHHHHHHHHHHHHHhC----CcEEeeCCCCCeEEEEEcc
Q psy13354 252 A--V---FPGIQGGPLMHVIAAKAVAFKEV-LKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTKSHIILVDLR 321 (1342)
Q Consensus 252 ~--~---~~~~~~~~~~~~~~Aaa~al~~~-l~~~~~~~~~~l~~~a~~l~~~L~~~----g~~~~~~~~~~~~v~i~~~ 321 (1342)
. . ....+ +. ++...+++.+..+. .. +.+.+++.++++++.+.|.+. ++..... ..+.++|+.++
T Consensus 293 ~~~~~~~~~~t~-~~-n~~~~aa~~aal~~~~~---~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~-~~g~~~~i~~~ 366 (453)
T 2cy8_A 293 GSDRKVLHQGTF-TG-NPITAAAAIAAIDTILE---DDVCAKINDLGQFAREAMNHLFARKGLNWLAY-GRFSGFHLMPG 366 (453)
T ss_dssp CC---------C-CC-CHHHHHHHHHHHHHHHH---TTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEE-CCTTEEEEEET
T ss_pred ccCCCceeCCCC-CC-CHHHHHHHHHHHHHHhh---hhHHHHHHHHHHHHHHHHHHHHhhCCCcEEEE-EeeeEEEEEEe
Confidence 1 0 11112 22 23333333333333 22 235677788888888888663 5432222 34568888886
Q ss_pred C-----C------------C--CCHHHHHHHHHHCCceee
Q psy13354 322 N-----K------------K--ITGKIAESILESANIICN 342 (1342)
Q Consensus 322 ~-----~------------~--~~~~~~~~ll~~~GI~v~ 342 (1342)
. . . ...++...+++ +||.+.
T Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~-~Gv~v~ 405 (453)
T 2cy8_A 367 LPPNTTDTGSITRAEVARPDVKMIAAMRMALIL-EGVDIG 405 (453)
T ss_dssp SCTTCCCCHHHHTTCSCCCCHHHHHHHHHHHHH-TTEECB
T ss_pred ccccccccccccccccccccHHHHHHHHHHHHH-CCeEEe
Confidence 4 1 0 12356666665 599984
No 287
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Probab=99.44 E-value=3.1e-13 Score=160.97 Aligned_cols=233 Identities=12% Similarity=0.048 Sum_probs=156.9
Q ss_pred chHHHHHHHHHHHHHHHhCCCCc--eEecCCHHHHHHHHHHHccCC----CCEEEEeeccCCccchhhHHhhhCCceeEE
Q psy13354 69 KFIDLIEKIAINRLKKIFNAEAA--NVQPHSGSQANQAVFFSVLNP----GDTIMGMSLQEGGHLTHGMMLNMSGKWFNS 142 (1342)
Q Consensus 69 ~~~~~Le~~~~~~la~~~g~~~~--vi~~~sGs~A~~~al~al~~p----GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~ 142 (1342)
+....+++.+..++.+++|.+.. .++++++|.+..+++.+.+++ ++.|+++. .+|.+...++...|.....
T Consensus 94 ~~~~~~e~~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~~~~~~~viv~r---~aHkSv~kAl~l~Gl~p~~ 170 (450)
T 3bc8_A 94 SLLNKITNSLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPR---IDQKSCFKSMVTAGFEPVV 170 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEEEC---CCCHHHHHHHHHTTCEEEE
T ss_pred cHHHHHHHHHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchhhcCCCEEEEEC---CcHHHHHHHHHHcCCeeEE
Confidence 33557888899999999998843 344546665444444444343 88888554 5888888899999986666
Q ss_pred EEec-CCCCCCCCHHHHHHHHHhc---CCeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCC-C
Q psy13354 143 ICYG-LNKKEKIDYKKVEYLAKKN---KPKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYP-N 215 (1342)
Q Consensus 143 v~~~-~~~~~~id~e~Le~~i~~~---~~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~-~ 215 (1342)
+... .++.+.+|++.+++++.++ .+.+|+.++++++ ...|+++|+++|++||+|++||+||+.........+ .
T Consensus 171 v~~~~~~~~~~id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~ddl~~Ia~ia~~~gi~l~VD~A~G~~~~~~~~l~~~ 250 (450)
T 3bc8_A 171 IENVLEGDELRTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQSSKCMHLIQQ 250 (450)
T ss_dssp ECCEEETTEEECCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTTTTCHHHHHHHHH
T ss_pred EEeeecCccCCcCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecCHHHHHHHHHHCCCeEEEECCCchhhhhhHhHHHH
Confidence 6432 2456889999999999764 3456777777776 467999999999999999999999985322110000 1
Q ss_pred CC--CCCcEEEecCCccCCCCCe-eEEEE-echhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy13354 216 PV--PFADFITSTTHKSLRGPRG-GFILM-KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 216 ~l--~~~Divv~S~sK~l~gp~G-G~iv~-~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~ 291 (1342)
.+ +.+|+++.|.|||+.+|.| |++.. +++..+.+... .+...++ +|. ..++..+.....+++.+..++..++
T Consensus 251 a~~~~~AD~~v~S~HK~l~a~~~~~~l~~rd~~~~~~~~~~-~~g~~s~--Sps-L~l~~~l~~~G~~g~~~~i~~~~~~ 326 (450)
T 3bc8_A 251 GARVGRIDAFVQSLDKNFMVPVGGAIIAGFNEPFIQDISKM-YPGRASA--SPS-LDVLITLLSLGCSGYRKLLKERKEM 326 (450)
T ss_dssp HHHHSCCCEEEEEHHHHHSCCSSCEEEEESCHHHHHHHHHH-SCSCBCS--HHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhcccCCCEEEECCccCCCchhccEEEEecCHHHHHHHHHH-hhcCCcc--cHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 12 4579999999999989988 55554 34555555442 2222222 333 3334444444555677777777888
Q ss_pred HHHHHHHHHhC----CcEEee
Q psy13354 292 AKILSKILDQR----GIRIVS 308 (1342)
Q Consensus 292 a~~l~~~L~~~----g~~~~~ 308 (1342)
++++++.+.+. |+.+..
T Consensus 327 a~~l~~~l~~~~~~~g~~~l~ 347 (450)
T 3bc8_A 327 FVYLSTQLKKLAEAHNERLLQ 347 (450)
T ss_dssp HHHHHHHHHHHHHHTTCCBCC
T ss_pred HHHHHHHHHhhHHhcCceecC
Confidence 99999888663 565543
No 288
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.44 E-value=6e-13 Score=162.39 Aligned_cols=198 Identities=18% Similarity=0.198 Sum_probs=142.1
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|..+++|..|++++|++..++.+...+.....+| +||+||||+|||++|+.+++.+.+.. .|+..
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r~~~~~-~LL~G~pG~GKT~la~~la~~l~~~~---------~p~~l---- 234 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNN-PVLIGEPGVGKTAIAEGLAQQIINNE---------VPEIL---- 234 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCE-EEEESCTTTTTHHHHHHHHHHHHSSC---------SCTTT----
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhccCCCC-eEEECCCCCCHHHHHHHHHHHHHhCC---------CChhh----
Confidence 46788999999999999999999999998866554 79999999999999999999986421 01000
Q ss_pred hhhccCCCccEEEEccC-CCcC--HHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 460 VKIDNGCFMDYIEMDAA-STRG--INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~-~~~~--~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
....++.++.+ ...+ ...+..+++.+.. ....|++|| .+.+.++.|+..++.. .+.+|.++
T Consensus 235 ------~~~~~~~l~~~~~~~g~~e~~~~~~~~~~~~----~~~~iLfiD----~~~~a~~~L~~~L~~g--~v~vI~at 298 (468)
T 3pxg_A 235 ------RDKRVMTLDMGTKYRGEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKPSLARG--ELQCIGAT 298 (468)
T ss_dssp ------SSCCEECC----------CTTHHHHHHHHHT----CCCCEEEEC----C--------CCCTTSS--SCEEEEEC
T ss_pred ------cCCeEEEeeCCccccchHHHHHHHHHHHHHh----cCCeEEEEe----CchhHHHHHHHhhcCC--CEEEEecC
Confidence 01123333332 1111 1345666766654 245699999 4455778888888854 67788888
Q ss_pred CCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcCC------cHHHHHHHH
Q psy13354 537 TEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQG------SMRDALSLT 601 (1342)
Q Consensus 537 ~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~g------~lr~a~~~L 601 (1342)
+... .+.+++.+||..+.|.+|+.++...++...+.+ +++.++++++..+++.+.+ .++.+++++
T Consensus 299 ~~~e~~~~~~~~~al~~Rf~~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 299 TLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (468)
T ss_dssp CTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred CHHHHHHHhhcCHHHHHhCccceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHHHHHH
Confidence 8776 577899999999999999999999999988776 7899999999999987653 356788888
Q ss_pred HHHHhh
Q psy13354 602 DQAINY 607 (1342)
Q Consensus 602 ~kl~~~ 607 (1342)
+.+...
T Consensus 379 ~~a~~~ 384 (468)
T 3pxg_A 379 DEAGSK 384 (468)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876653
No 289
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.44 E-value=1.7e-14 Score=163.19 Aligned_cols=214 Identities=17% Similarity=0.230 Sum_probs=147.4
Q ss_pred hccCCCCccccccchhhHHHHHHHHH-----------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALD-----------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~-----------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
.++.+..|++++|++.+++.+.+.+. ....++++||+||+|||||++|+++++.+..... ..
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~-------~v 75 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF-------SM 75 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC-------CC
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEE-------Ee
Confidence 45678899999999999999888775 2345667999999999999999999999864211 11
Q ss_pred CCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH---------------HH
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH---------------AF 516 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~---------------~~ 516 (1342)
.| ........+ . +...++.+++.+... .+.+|+|||+|.+... .+
T Consensus 76 ~~---~~~~~~~~~----------~---~~~~~~~~~~~a~~~----~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~ 135 (268)
T 2r62_A 76 GG---SSFIEMFVG----------L---GASRVRDLFETAKKQ----APSIIFIDEIDAIGKSRAAGGVVSGNDEREQTL 135 (268)
T ss_dssp CS---CTTTTSCSS----------S---CSSSSSTTHHHHHHS----CSCEEEESCGGGTTC----------CCCSCSST
T ss_pred ch---HHHHHhhcc----------h---HHHHHHHHHHHHHhc----CCeEEEEeChhhhcccccccccCCCchhHHHHH
Confidence 11 111110000 0 011122333333321 3469999999988542 24
Q ss_pred HHHHHhhcCCC---CcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc
Q psy13354 517 NAMLKTLEEPP---KYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA 590 (1342)
Q Consensus 517 ~~Ll~~Le~p~---~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~ 590 (1342)
+.|+..++... ..+++|+++|.++.+.+++.+ |+ ..+.+++|+.++..++++..++..... ++..++.+++.+
T Consensus 136 ~~ll~~l~~~~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~ 214 (268)
T 2r62_A 136 NQLLAEMDGFGSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLT 214 (268)
T ss_dssp TTTTTTTTCSSCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSS
T ss_pred HHHHHHhhCcccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHc
Confidence 56777776543 347788888888888888888 65 678999999999999998887655432 333467778877
Q ss_pred CC-cHHHHHHHHHHHHhhcC----CCCCHHHHHHHhccC
Q psy13354 591 QG-SMRDALSLTDQAINYSS----EKITLNSMQEMLSII 624 (1342)
Q Consensus 591 ~g-~lr~a~~~L~kl~~~~~----~~It~e~V~~~v~~~ 624 (1342)
.| +.+++.+.++.+..++. ..|+.+++.+++...
T Consensus 215 ~g~~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~ 253 (268)
T 2r62_A 215 AGLAGADLANIINEAALLAGRNNQKEVRQQHLKEAVERG 253 (268)
T ss_dssp CSSCHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTC
T ss_pred CCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 76 56788889988877763 359999998877543
No 290
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.41 E-value=1.1e-12 Score=147.95 Aligned_cols=203 Identities=15% Similarity=0.207 Sum_probs=133.8
Q ss_pred CCccccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCC
Q psy13354 388 SNFNTLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC 466 (1342)
Q Consensus 388 ~~f~~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~ 466 (1342)
.+|++++|+...++.+.+.+.. ...+..+||+||+|||||++|+.+++.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKt~la~~i~~~~~~~~------------------------- 57 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLAPLDKPVLIIGERGTGKELIASRLHYLSSRWQ------------------------- 57 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHTTSCSCEEEECCTTSCHHHHHHHHHHTSTTTT-------------------------
T ss_pred cccccceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHHHhcCccC-------------------------
Confidence 3799999999998888776653 23345689999999999999999998765210
Q ss_pred CccEEEEccCCCcCHHHHHH-HHHH--------Hhh-cC-c-cCCceEEEeccCccCCHHHHHHHHHhhcCC--------
Q psy13354 467 FMDYIEMDAASTRGINEMAQ-LLEQ--------TIY-AP-I-NARYKIYVIDEVHMLTHHAFNAMLKTLEEP-------- 526 (1342)
Q Consensus 467 ~~d~~~i~~~~~~~~~~i~~-ii~~--------~~~-~p-~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-------- 526 (1342)
..++.++++... .+.+.. ++.. ... .. + .....+++|||++.++.+.++.|++++++.
T Consensus 58 -~~~~~v~~~~~~-~~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~ 135 (265)
T 2bjv_A 58 -GPFISLNCAALN-ENLLDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAPMMVQEKLLRVIEYGELERVGGS 135 (265)
T ss_dssp -SCEEEEEGGGSC-HHHHHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSCHHHHHHHHHHHHHCEECCCCC-
T ss_pred -CCeEEEecCCCC-hhHHHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcCHHHHHHHHHHHHhCCeecCCCc
Confidence 124455544321 111111 1000 000 00 0 123459999999999999999999999853
Q ss_pred ---CCcEEEEEEeCCC-------CCChHHHhccE--EEEEEcCCCH--HHHHHHHH----HHHHhcCC----CcchhHHH
Q psy13354 527 ---PKYIKFILATTEP-------QKIPITVLSRC--IQFNLKKMLH--HDIVNNLC----YILNKENI----KFETSALN 584 (1342)
Q Consensus 527 ---~~~~vlIl~t~~~-------~kl~~~L~sR~--~~i~~~~l~~--~el~~~l~----~~~~~~g~----~i~~~al~ 584 (1342)
+.++.+|+++|.. ..+.+.+.+|+ ..+.++++.+ +++..++. +..++.+. .+++++++
T Consensus 136 ~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~ 215 (265)
T 2bjv_A 136 QPLQVNVRLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARE 215 (265)
T ss_dssp -CEECCCEEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHH
T ss_pred ccccCCeEEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHH
Confidence 3467788888874 24567888998 5688888875 56665544 44444554 68999999
Q ss_pred HHHHhc-CCcHHHHHHHHHHHHhhcC-CCCCHHHH
Q psy13354 585 LIATGA-QGSMRDALSLTDQAINYSS-EKITLNSM 617 (1342)
Q Consensus 585 ~La~~~-~g~lr~a~~~L~kl~~~~~-~~It~e~V 617 (1342)
.|.... .||+|.+.+.++.++..+. ..|+.+++
T Consensus 216 ~L~~~~~~gn~reL~~~l~~~~~~~~~~~i~~~~l 250 (265)
T 2bjv_A 216 TLLNYRWPGNIRELKNVVERSVYRHGTSDYPLDDI 250 (265)
T ss_dssp HHHHSCCTTHHHHHHHHHHHHHHHHCCSSSCBCCC
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhCCCCcCcHHHc
Confidence 998875 9999999999999877664 44776655
No 291
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Probab=99.41 E-value=5.3e-13 Score=156.15 Aligned_cols=260 Identities=13% Similarity=0.078 Sum_probs=168.0
Q ss_pred HHHHHHHHHHHhCCCCc--eEecCCHHHHHHHHHHHccCC----CCEEEEeeccCCccchhhHHhhhCCceeEEEEecCC
Q psy13354 75 EKIAINRLKKIFNAEAA--NVQPHSGSQANQAVFFSVLNP----GDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN 148 (1342)
Q Consensus 75 e~~~~~~la~~~g~~~~--vi~~~sGs~A~~~al~al~~p----GD~Vlv~~~~~~~~~s~~~~~~~~g~~~~~v~~~~~ 148 (1342)
+..+.+|++.. |.+.+ .+.++++|.++.+++.+.+++ ||.|++ +..+|.+....+...|....+++...+
T Consensus 119 n~l~ld~L~~~-G~~~~~~~flVnGsTgg~lamilaa~r~~rpg~d~VIv---pRn~HKSv~kAliL~Gl~Pv~V~p~~d 194 (501)
T 3hl2_A 119 NSLVLDIIKLA-GVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIW---PRIDQKSCFKSMITAGFEPVVIENVLE 194 (501)
T ss_dssp HHHHHHHHHHT-TCTTCCEEEEESSCHHHHHHHHHHHHHHHCTTCCEEEE---ECCCCHHHHHHHHHTTCEEEEECEEEE
T ss_pred HHHHHHHHHHc-CCCCCCcEEEECcHHHHHHHHHHHHcCcccCCCCEEEE---ecchHHHHHHHHHHcCCeEEEEeeeec
Confidence 34455566665 88733 555647776777777777663 499995 447888988888899986555543222
Q ss_pred -CCCCCCHHHHHHHHHhcC---CeEEEEcCCCCC--cccCHHHHHHHHHHcCCEEEEEcccchhhhhc-CCCCCCC--CC
Q psy13354 149 -KKEKIDYKKVEYLAKKNK---PKLIIAGASAYS--QYIDFERFYHIAKNINSYFMVDMAHYAGLIAA-GEYPNPV--PF 219 (1342)
Q Consensus 149 -~~~~id~e~Le~~i~~~~---~~liv~~~s~~~--~~~~l~~I~~la~~~gi~LIvDea~~~g~~~~-~~~~~~l--~~ 219 (1342)
+...+|++.+++++.++. ..+++.++++|. ...++++|+++|++||++++||+||+.-.... ......+ ..
T Consensus 195 ~~~~~id~e~le~aI~e~ga~~i~~V~~Ttt~y~p~~~ddI~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~Gr 274 (501)
T 3hl2_A 195 GDELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGR 274 (501)
T ss_dssp TTEEEECHHHHHHHHHHHCGGGEEEEEEECSCCTTBCCCCHHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSC
T ss_pred ccccCCCHHHHHHHHHhcCCCcEEEEEecCCCCCCcccccHHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCC
Confidence 457789999999998753 233444555554 44699999999999999999999997533111 1000111 13
Q ss_pred CcEEEecCCccCCCCCeeEEE-Ee-chhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Q psy13354 220 ADFITSTTHKSLRGPRGGFIL-MK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297 (1342)
Q Consensus 220 ~Divv~S~sK~l~gp~GG~iv-~~-~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~ 297 (1342)
+|+++.|.||++..|.||+++ .+ +++.+.+... .++..++ + ....+..+++.+..++++++.++..+++++|.+
T Consensus 275 AD~vVqS~HK~llvpIGG~ii~~~d~e~l~~~~~~-yPGr~S~--S-psldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~ 350 (501)
T 3hl2_A 275 IDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKM-YPGRASA--S-PSLDVLITLLSLGSNGYKKLLKERKEMFSYLSN 350 (501)
T ss_dssp CCEEEEEHHHHHCCCSSCEEEEESCHHHHHHHHHT-SCSCBCS--H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcEEEecccccceeecCceEEEeCCHHHHHHHHHh-CCCCCCC--c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999888886555 44 4666666543 3333322 2 344456677777777899999999999999999
Q ss_pred HHHhC----CcEEeeCCCCCeEEEEEccCCCC-----CHHHHHHHHHHCCceeee
Q psy13354 298 ILDQR----GIRIVSGGTKSHIILVDLRNKKI-----TGKIAESILESANIICNK 343 (1342)
Q Consensus 298 ~L~~~----g~~~~~~~~~~~~v~i~~~~~~~-----~~~~~~~ll~~~GI~v~~ 343 (1342)
.|++. |-++...+.+.--+.+.+..... ..++-..|..+ +|.-..
T Consensus 351 ~L~~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r-~vsG~R 404 (501)
T 3hl2_A 351 QIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTR-QVSGAR 404 (501)
T ss_dssp HHHHHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHT-TCCSCE
T ss_pred HHHHHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhc-CCCcce
Confidence 99883 44443322122223344433211 12455566655 665443
No 292
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.38 E-value=2.2e-12 Score=157.19 Aligned_cols=191 Identities=15% Similarity=0.201 Sum_probs=142.2
Q ss_pred ccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 384 KYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 384 k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
...+..|++++|++.+++.|.+.+.. -..+..+||+||+|||||++|+++++.+++
T Consensus 197 ~~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~------------ 264 (489)
T 3hu3_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA------------ 264 (489)
T ss_dssp HHTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSS------------
T ss_pred ccCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCC------------
Confidence 45678999999999999999888754 356678999999999999999999998753
Q ss_pred CCCCCcchhhhccCCCccEEEEccCC----CcC--HHHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------H
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAAS----TRG--INEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------H 514 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~----~~~--~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~ 514 (1342)
.++.++++. ..+ ...++.++..+.. ..+.+|+|||+|.+.. .
T Consensus 265 -----------------~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~~----~~p~iLfLDEId~l~~~~~~~~~~~~~~ 323 (489)
T 3hu3_A 265 -----------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEVERR 323 (489)
T ss_dssp -----------------EEEEEEHHHHHTSCTTHHHHHHHHHHHHHHH----TCSEEEEEESHHHHCBCTTSCCCHHHHH
T ss_pred -----------------CEEEEEchHhhhhhcchhHHHHHHHHHHHHh----cCCcEEEecchhhhccccccccchHHHH
Confidence 244444321 111 2245555555543 2346999999986632 4
Q ss_pred HHHHHHHhhcC--CCCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 515 AFNAMLKTLEE--PPKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 515 ~~~~Ll~~Le~--p~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
.++.|+..++. .+.++++|.+||.++.+.+++.+ |+ ..+.+..|+.++..+++..+++..... .+..+..+++.
T Consensus 324 ~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~ 402 (489)
T 3hu3_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE 402 (489)
T ss_dssp HHHHHHHHHHHSCTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHT
T ss_pred HHHHHHHHhhccccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHH
Confidence 67888888873 45678899999999999999998 66 679999999999999999888766554 33346778888
Q ss_pred cCC-cHHHHHHHHHHHHhhc
Q psy13354 590 AQG-SMRDALSLTDQAINYS 608 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~~~~ 608 (1342)
+.| +.+++.+++..+...+
T Consensus 403 t~g~s~~dL~~L~~~A~~~a 422 (489)
T 3hu3_A 403 THGHVGADLAALCSEAALQA 422 (489)
T ss_dssp CTTCCHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHH
Confidence 776 5667777777766554
No 293
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.37 E-value=3.2e-12 Score=152.01 Aligned_cols=202 Identities=23% Similarity=0.248 Sum_probs=137.8
Q ss_pred ccccchhhHHHHHHHHH----c-------------------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCC
Q psy13354 392 TLIGQNHISKSLINALD----K-------------------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGI 442 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~----~-------------------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~ 442 (1342)
.++||+.+++.|..++. . ...++.+||+||+|||||++|+.+++.+++.
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~-- 99 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIP-- 99 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCC--
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCC--
Confidence 58999999999988872 1 1234569999999999999999999998531
Q ss_pred CCCCCcccCCCCCCcchhhhccCCCccEEEEccCCC--------cCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHH
Q psy13354 443 DGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAST--------RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH 514 (1342)
Q Consensus 443 ~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~--------~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~ 514 (1342)
++.+++... .....+..++.............+++|||++.+...
T Consensus 100 ---------------------------~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~ 152 (376)
T 1um8_A 100 ---------------------------IAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRL 152 (376)
T ss_dssp ---------------------------EEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC---
T ss_pred ---------------------------EEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhh
Confidence 222222110 011223334333211111234569999999999876
Q ss_pred --------------HHHHHHHhhcCCC---------------------CcEEEEEEeCC---------------------
Q psy13354 515 --------------AFNAMLKTLEEPP---------------------KYIKFILATTE--------------------- 538 (1342)
Q Consensus 515 --------------~~~~Ll~~Le~p~---------------------~~~vlIl~t~~--------------------- 538 (1342)
.++.|++.++... .++++|++++.
T Consensus 153 ~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~ 232 (376)
T 1um8_A 153 SENRSITRDVSGEGVQQALLKIVEGSLVNIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQE 232 (376)
T ss_dssp -----------CHHHHHHHHHHHHCCEEC---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCS
T ss_pred cCCCceecccchHHHHHHHHHHhhccceecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCch
Confidence 8899999999641 34567777651
Q ss_pred --------------------CCCChHHHhccE-EEEEEcCCCHHHHHHHHHH----H-------HHh--cCCCcchhHHH
Q psy13354 539 --------------------PQKIPITVLSRC-IQFNLKKMLHHDIVNNLCY----I-------LNK--ENIKFETSALN 584 (1342)
Q Consensus 539 --------------------~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~----~-------~~~--~g~~i~~~al~ 584 (1342)
...+.+.+.+|+ .++.|++++.+++..++.. . +.. .++.+++++++
T Consensus 233 ~~~~~~~~~~~~~~~~~~l~~~~~~p~l~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 312 (376)
T 1um8_A 233 KMSKKEQEAILHLVQTHDLVTYGLIPELIGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIK 312 (376)
T ss_dssp SCCTTTTTTSGGGCCHHHHHHTTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHH
T ss_pred hhhccchhHHHhhcCHHHHhhcCCChHHhcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHH
Confidence 012457899999 8999999999999998862 1 111 24579999999
Q ss_pred HHHHhcC---CcHHHHHHHHHHHHhh-----cC---C--CCCHHHHHHHhc
Q psy13354 585 LIATGAQ---GSMRDALSLTDQAINY-----SS---E--KITLNSMQEMLS 622 (1342)
Q Consensus 585 ~La~~~~---g~lr~a~~~L~kl~~~-----~~---~--~It~e~V~~~v~ 622 (1342)
+|++.+. |+.|.+.+.+++++.. .. + .||.++|++...
T Consensus 313 ~l~~~~~~~~~~~R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 313 EIAQLALERKTGARGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQAE 363 (376)
T ss_dssp HHHHHHHHTTCTGGGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSSC
T ss_pred HHHHHhcccccCcHHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCCC
Confidence 9999865 9999999999986653 11 1 288888887554
No 294
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.36 E-value=4.3e-12 Score=154.12 Aligned_cols=206 Identities=19% Similarity=0.239 Sum_probs=143.8
Q ss_pred CCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
.+.+|++++|++.++..+.+.+.. .+++..++|+||+|||||+++++++..+..
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~--------------- 90 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV--------------- 90 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTC---------------
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCC---------------
Confidence 567899999999999888777631 245678999999999999999999998752
Q ss_pred CCcchhhhccCCCccEEEEccCCCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------HHHHH
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAASTR--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------HAFNA 518 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~~~~~ 518 (1342)
.++.++++... ........+..+........+.+++|||++.+.. ...+.
T Consensus 91 --------------~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~ 156 (499)
T 2dhr_A 91 --------------PFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQ 156 (499)
T ss_dssp --------------CEEEEEGGGGTSSCTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHH
T ss_pred --------------CEEEEehhHHHHhhhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHH
Confidence 23444433211 1111222222222222222346999999987731 24567
Q ss_pred HHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHHHHHhcCC
Q psy13354 519 MLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNLIATGAQG 592 (1342)
Q Consensus 519 Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~La~~~~g 592 (1342)
|+..++.. ...+++|.++|.++.+.+++.+ |+ ..+.+..|+.++..++++.+++ +..+++++ +..++..+.|
T Consensus 157 LL~~Ldg~~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~--~~~l~~dv~l~~lA~~t~G 234 (499)
T 2dhr_A 157 LLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLALLAKRTPG 234 (499)
T ss_dssp HHHHGGGCCSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTS--SSCCCCSSTTHHHHTTSCS
T ss_pred HHHHhcccccCccEEEEEecCChhhcCcccccccccceEEecCCCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHhcCC
Confidence 77777633 3456666777888888888887 44 6899999999999999876654 44555554 8889999988
Q ss_pred cH-HHHHHHHHHHHhhcC----CCCCHHHHHHHhc
Q psy13354 593 SM-RDALSLTDQAINYSS----EKITLNSMQEMLS 622 (1342)
Q Consensus 593 ~l-r~a~~~L~kl~~~~~----~~It~e~V~~~v~ 622 (1342)
+. +++.+.++.+..++. ..|+.+++.+++.
T Consensus 235 ~~gadL~~lv~~Aa~~A~~~~~~~It~~dl~~al~ 269 (499)
T 2dhr_A 235 FVGADLENLLNEAALLAAREGRRKITMKDLEEAAD 269 (499)
T ss_dssp CCHHHHHHHHHHHHHHHTTTCCSSCCSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHH
Confidence 87 899999999877653 3488888887663
No 295
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.35 E-value=1.4e-11 Score=138.07 Aligned_cols=204 Identities=21% Similarity=0.273 Sum_probs=142.5
Q ss_pred hccCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 383 RKYRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 383 ~k~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
..+.+.+|++++|+++++..+.+.... -.++..++|+||+|+|||+++++++..+..
T Consensus 8 ~~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~------------ 75 (254)
T 1ixz_A 8 TEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV------------ 75 (254)
T ss_dssp CCCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTC------------
T ss_pred cCCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC------------
Confidence 456677999999999998877766531 134567999999999999999999998752
Q ss_pred CCCCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-------------
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT------------- 512 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~------------- 512 (1342)
.++.+++.. ......+..+++.+.. ..+.++++||++.+.
T Consensus 76 -----------------~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~i~~~Deid~l~~~~~~~~~~~~~~ 134 (254)
T 1ixz_A 76 -----------------PFITASGSDFVEMFVGVGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDE 134 (254)
T ss_dssp -----------------CEEEEEHHHHHHSCTTHHHHHHHHHHHHHTT----SSSEEEEEETHHHHHC---------CHH
T ss_pred -----------------CEEEeeHHHHHHHHhhHHHHHHHHHHHHHHh----cCCeEEEehhhhhhhcccCccccccchH
Confidence 123333210 0111234445544421 234699999998652
Q ss_pred -HHHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHH
Q psy13354 513 -HHAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNL 585 (1342)
Q Consensus 513 -~~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~ 585 (1342)
....+.++..++.. ....+++.+++.++.+.+++.+ |+ ..+.++.|+.++..++++..++ +..+++++ +..
T Consensus 135 ~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~--~~~~~~~~~~~~ 212 (254)
T 1ixz_A 135 REQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHAR--GKPLAEDVDLAL 212 (254)
T ss_dssp HHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHT--TSCBCTTCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHc--CCCCCcccCHHH
Confidence 11245666666543 2345666678888888899988 55 7899999999999999987764 34455544 889
Q ss_pred HHHhcCCcH-HHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 586 IATGAQGSM-RDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 586 La~~~~g~l-r~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
+++.+.|+. +++.+.++++..++ ...||.+++++++
T Consensus 213 la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 213 LAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 999998865 88989998877654 2359999998875
No 296
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Probab=99.35 E-value=3.8e-12 Score=155.95 Aligned_cols=302 Identities=15% Similarity=0.079 Sum_probs=168.0
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-------
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL------- 110 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~------- 110 (1342)
.+|.+.+|+.+.+... ..++.. .++. ....+++++++++++++++.. +.+++++||++|+..+++++.
T Consensus 80 ~~p~v~~A~~~~~~~~-~~~~~~--~~~~-~~~~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~ 155 (472)
T 1ohv_A 80 SHPALVKLVQQPQNVS-TFINRP--ALGI-LPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKE 155 (472)
T ss_dssp TCHHHHHHHHCGGGHH-HHHCCC--CTTT-SCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhc-cccccc--cccc-ccHHHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhc
Confidence 4677999988865321 111111 1221 222367776666777766422 345556699999999998773
Q ss_pred -C-----------------CC---CEEEEeeccCCccchhhHHhh------hCCce---eEEEEecCC--C---C--C--
Q psy13354 111 -N-----------------PG---DTIMGMSLQEGGHLTHGMMLN------MSGKW---FNSICYGLN--K---K--E-- 151 (1342)
Q Consensus 111 -~-----------------pG---D~Vlv~~~~~~~~~s~~~~~~------~~g~~---~~~v~~~~~--~---~--~-- 151 (1342)
+ || ++|++....+.++......+. ..+.. +..++++.. . . +
T Consensus 156 ~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~yHg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 235 (472)
T 1ohv_A 156 RGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQ 235 (472)
T ss_dssp HTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHHCCSCHHHHTTSCCCCCCEECCCCCCSSGGGCHHHHH
T ss_pred cCcccccccccccccccccccCCCCeEEEECCCcccccHHHHhcCCCccccccCCCCCCCcccCCCcccCccccccccch
Confidence 1 46 899987766655433322111 11111 012233210 0 0 0
Q ss_pred ---CCCHHHHHHHHHhc-----CCeEEEEcCC-CCCc-ccC----HHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC-
Q psy13354 152 ---KIDYKKVEYLAKKN-----KPKLIIAGAS-AYSQ-YID----FERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN- 215 (1342)
Q Consensus 152 ---~id~e~Le~~i~~~-----~~~liv~~~s-~~~~-~~~----l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~- 215 (1342)
..|+++|++++++. ++++|++.+. ++.+ ..+ +++|.++|++||++||+||+|. +|.. +.+..
T Consensus 236 ~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~--g~~~~~ 313 (472)
T 1ohv_A 236 QEEARCLEEVEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGST--GKFWAH 313 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTT--SSSSGG
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCCcCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCC--CCchhc
Confidence 23688899988762 4567777542 2233 345 9999999999999999999997 3322 11111
Q ss_pred -CCC---CCcEEEecCCccCCCCCeeEEEEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHH
Q psy13354 216 -PVP---FADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291 (1342)
Q Consensus 216 -~l~---~~Divv~S~sK~l~gp~GG~iv~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~ 291 (1342)
... .+|++ |+||++.| ||+++ ++++. .+.......+++ .+...++++. +.++.+.+ +.+.+++.++
T Consensus 314 ~~~gv~~~~Di~--t~sK~~l~--GG~~~-~~~~~-~~~~~~~~~T~~-~~~~~~aaa~-aal~~~~~--~~~~~~~~~~ 383 (472)
T 1ohv_A 314 EHWGLDDPADVM--TFSKKMMT--GGFFH-KEEFR-PNAPYRIFNTWL-GDPSKNLLLA-EVINIIKR--EDLLSNAAHA 383 (472)
T ss_dssp GGGCCSSCCSEE--EECGGGSS--EEEEE-CGGGS-CSSSSSSCCSSS-SCHHHHHHHH-HHHHHHHH--TTHHHHHHHH
T ss_pred cccCCCCCCCEE--EEcccccc--CCccC-chhhc-ccccccccCccC-ccHHHHHHHH-HHHHHHHh--CCHHHHHHHH
Confidence 111 15766 56699413 68877 65542 111111112222 2333444444 33443321 2356788888
Q ss_pred HHHHHHHHHhC--C----cEEeeCCCCCeEEEEEccCCCCCHHHHHHHHHHCCceeeeccCCCCCCCccccccccccccc
Q psy13354 292 AKILSKILDQR--G----IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365 (1342)
Q Consensus 292 a~~l~~~L~~~--g----~~~~~~~~~~~~v~i~~~~~~~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~ 365 (1342)
++++.+.|.+. + +.... ..+.++++.++.......++..+++ +||.+.+.. .+.+|++++.
T Consensus 384 ~~~l~~~L~~l~~~~~~~v~~~~--~~g~~~~~~~~~~~~~~~~~~~l~~-~Gv~~~~~g----------~~~iRi~~~~ 450 (472)
T 1ohv_A 384 GKVLLTGLLDLQARYPQFISRVR--GRGTFCSFDTPDESIRNKLISIARN-KGVMLGGCG----------DKSIRFRPTL 450 (472)
T ss_dssp HHHHHHHHHHHHHHCTTTCEEEE--EETTEEEEECSSHHHHHHHHHHHHH-TTEECEEET----------TTEEEECCCT
T ss_pred HHHHHHHHHHHHhhCCCcEEeec--CCceEEEEEeCChhHHHHHHHHHHH-CCeEEecCC----------CCEEEEECCC
Confidence 88888888764 1 22222 2355677776542223467777775 599998631 2469998887
Q ss_pred cccc
Q psy13354 366 ITTR 369 (1342)
Q Consensus 366 ~~t~ 369 (1342)
.++.
T Consensus 451 ~~t~ 454 (472)
T 1ohv_A 451 VFRD 454 (472)
T ss_dssp TCCH
T ss_pred CCCH
Confidence 7664
No 297
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.35 E-value=1.3e-12 Score=161.89 Aligned_cols=213 Identities=16% Similarity=0.192 Sum_probs=138.2
Q ss_pred CccccccchhhHHHHHHHHHc-----CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhc
Q psy13354 389 NFNTLIGQNHISKSLINALDK-----KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKID 463 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~-----~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~ 463 (1342)
..++++|+++++..+.+.+.- ...+..++|+||||+|||++++.+++.+.... -...|....
T Consensus 79 l~~di~G~~~vk~~i~~~~~l~~~~~~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~-------~~i~~~~~~------ 145 (543)
T 3m6a_A 79 LDEEHHGLEKVKERILEYLAVQKLTKSLKGPILCLAGPPGVGKTSLAKSIAKSLGRKF-------VRISLGGVR------ 145 (543)
T ss_dssp HHHHCSSCHHHHHHHHHHHHHHHHSSSCCSCEEEEESSSSSSHHHHHHHHHHHHTCEE-------EEECCCC--------
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCCCHHHHHHHHHHhcCCCe-------EEEEecccc------
Confidence 356799999999888665431 12345799999999999999999999986310 011111100
Q ss_pred cCCCccEEEEccCCCcCH----HHHHHHHHHHhhcCccCCceEEEeccCccCCHH----HHHHHHHhhcCCC--------
Q psy13354 464 NGCFMDYIEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH----AFNAMLKTLEEPP-------- 527 (1342)
Q Consensus 464 ~~~~~d~~~i~~~~~~~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~----~~~~Ll~~Le~p~-------- 527 (1342)
+..++.......+ ..+.+.+.. .. ....++++||++.+..+ .++.|++.++...
T Consensus 146 -----~~~~~~g~~~~~ig~~~~~~~~~~~~---a~--~~~~vl~lDEid~l~~~~~~~~~~~LL~~ld~~~~~~~~~~~ 215 (543)
T 3m6a_A 146 -----DESEIRGHRRTYVGAMPGRIIQGMKK---AG--KLNPVFLLDEIDKMSSDFRGDPSSAMLEVLDPEQNSSFSDHY 215 (543)
T ss_dssp -----------------------CHHHHHHT---TC--SSSEEEEEEESSSCC---------CCGGGTCTTTTTBCCCSS
T ss_pred -----hhhhhhhHHHHHhccCchHHHHHHHH---hh--ccCCEEEEhhhhhhhhhhccCHHHHHHHHHhhhhcceeeccc
Confidence 0000000000001 112222221 11 12339999999999766 4588899887532
Q ss_pred -------CcEEEEEEeCCCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHH-----hc-----CCCcchhHHHHHHHhc
Q psy13354 528 -------KYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILN-----KE-----NIKFETSALNLIATGA 590 (1342)
Q Consensus 528 -------~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~-----~~-----g~~i~~~al~~La~~~ 590 (1342)
.++++|+++|..+.++++|++|+.++.|++|+.++...++..++. .. ++.++++++..+++..
T Consensus 216 ~~~~~~~~~v~iI~ttN~~~~l~~aL~~R~~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~ 295 (543)
T 3m6a_A 216 IEETFDLSKVLFIATANNLATIPGPLRDRMEIINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYY 295 (543)
T ss_dssp SCCCCBCSSCEEEEECSSTTTSCHHHHHHEEEEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHH
T ss_pred CCeeecccceEEEeccCccccCCHHHHhhcceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhC
Confidence 567889999999999999999999999999999999999888763 23 4568999999988754
Q ss_pred --CCcHHHHHHHHHHHHhhcC----------CCCCHHHHHHHhccC
Q psy13354 591 --QGSMRDALSLTDQAINYSS----------EKITLNSMQEMLSII 624 (1342)
Q Consensus 591 --~g~lr~a~~~L~kl~~~~~----------~~It~e~V~~~v~~~ 624 (1342)
.|++|.+.+.+++++..+. ..||.++++++++..
T Consensus 296 ~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~~ 341 (543)
T 3m6a_A 296 TREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGKR 341 (543)
T ss_dssp CCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCSC
T ss_pred ChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCCc
Confidence 3799999888887654321 127777777777543
No 298
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.33 E-value=8.1e-12 Score=141.51 Aligned_cols=180 Identities=16% Similarity=0.266 Sum_probs=124.3
Q ss_pred cccccchhhHHHHHH-------HHH--cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhh
Q psy13354 391 NTLIGQNHISKSLIN-------ALD--KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~-------~l~--~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
..++|+...++.+.. .++ ....++.+||+||+|||||++|+++++.+++
T Consensus 33 ~~~i~~~~~~~~i~~~~~~l~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~---------------------- 90 (272)
T 1d2n_A 33 NGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNF---------------------- 90 (272)
T ss_dssp TCCCCCSHHHHHHHHHHHHHHHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTC----------------------
T ss_pred cCCCCccHHHHHHHHHHHHHHHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCC----------------------
Confidence 456777665544433 443 2455678999999999999999999999763
Q ss_pred hccCCCccEEEEccCC-------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccC----------CHHHHHHHHHhhc
Q psy13354 462 IDNGCFMDYIEMDAAS-------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHML----------THHAFNAMLKTLE 524 (1342)
Q Consensus 462 ~~~~~~~d~~~i~~~~-------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L----------~~~~~~~Ll~~Le 524 (1342)
.++.++.++ ......++.+++.+.. ....+|+|||++.+ .....+.|...++
T Consensus 91 -------~~~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~----~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~ 159 (272)
T 1d2n_A 91 -------PFIKICSPDKMIGFSETAKCQAMKKIFDDAYK----SQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLK 159 (272)
T ss_dssp -------SEEEEECGGGCTTCCHHHHHHHHHHHHHHHHT----SSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTT
T ss_pred -------CEEEEeCHHHhcCCchHHHHHHHHHHHHHHHh----cCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhc
Confidence 133333321 0111344555554432 44679999999986 4556677777777
Q ss_pred C---CCCcEEEEEEeCCCCCChH-HHhccE-EEEEEcCCCH-HHHHHHHHHHHHhcCCCcchhHHHHHHHhcCC-----c
Q psy13354 525 E---PPKYIKFILATTEPQKIPI-TVLSRC-IQFNLKKMLH-HDIVNNLCYILNKENIKFETSALNLIATGAQG-----S 593 (1342)
Q Consensus 525 ~---p~~~~vlIl~t~~~~kl~~-~L~sR~-~~i~~~~l~~-~el~~~l~~~~~~~g~~i~~~al~~La~~~~g-----~ 593 (1342)
. ++..+++|.+++.++.+.+ .+.+|+ ..+.+++++. +++..++.+ . ..++++++..+++.+.| +
T Consensus 160 ~~~~~~~~~~ii~ttn~~~~l~~~~l~~rf~~~i~~p~l~~r~~i~~i~~~----~-~~~~~~~~~~l~~~~~g~~~~g~ 234 (272)
T 1d2n_A 160 KAPPQGRKLLIIGTTSRKDVLQEMEMLNAFSTTIHVPNIATGEQLLEALEL----L-GNFKDKERTTIAQQVKGKKVWIG 234 (272)
T ss_dssp CCCSTTCEEEEEEEESCHHHHHHTTCTTTSSEEEECCCEEEHHHHHHHHHH----H-TCSCHHHHHHHHHHHTTSEEEEC
T ss_pred CccCCCCCEEEEEecCChhhcchhhhhcccceEEcCCCccHHHHHHHHHHh----c-CCCCHHHHHHHHHHhcCCCcccc
Confidence 5 3445667777777766665 677885 8899998887 666666543 2 24789999999999988 9
Q ss_pred HHHHHHHHHHHHhhc
Q psy13354 594 MRDALSLTDQAINYS 608 (1342)
Q Consensus 594 lr~a~~~L~kl~~~~ 608 (1342)
+|.+++.++.+...+
T Consensus 235 ir~l~~~l~~a~~~~ 249 (272)
T 1d2n_A 235 IKKLLMLIEMSLQMD 249 (272)
T ss_dssp HHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHhhhc
Confidence 999999998776543
No 299
>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*
Probab=99.31 E-value=8.7e-11 Score=141.47 Aligned_cols=242 Identities=14% Similarity=0.058 Sum_probs=147.7
Q ss_pred CcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCCCceEecCCHHHHHHHHHHHcc--CCCCEE
Q psy13354 39 TSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVL--NPGDTI 116 (1342)
Q Consensus 39 l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~~~vi~~~sGs~A~~~al~al~--~pGD~V 116 (1342)
-.|.+.+|+.+++..... +...+....+ +.+.+++.+..-+.+.|++|||+|++.+++... ...++|
T Consensus 104 ~hp~v~~Av~~q~~~~~~-------~~~~~~~~~~----lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~tgr~~i 172 (454)
T 4ao9_A 104 SAPEIRDAVIEAMQGGIN-------LTGHNLLEGR----LARLICERFPQIEQLRFTNSGTEANLMALTAALHFTGRRKI 172 (454)
T ss_dssp CCHHHHHHHHHHHHTCSC-------CCSEESSHHH----HHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHHTCCEE
T ss_pred CCHHHHHHHHHHHhcCCC-------ccCCcHHHHH----HHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcccCCeE
Confidence 467899999888853211 1122333334 445788877655666777799999999998763 234567
Q ss_pred EEeeccCCcc-chhhHHhhhCCceeEEEEecCCCCCCCCHHHHHHHHHhcCC--eEEEEcC--CCCC----cccCHHHHH
Q psy13354 117 MGMSLQEGGH-LTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKP--KLIIAGA--SAYS----QYIDFERFY 187 (1342)
Q Consensus 117 lv~~~~~~~~-~s~~~~~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~~~~--~liv~~~--s~~~----~~~~l~~I~ 187 (1342)
+...-.|.++ ..........+.......++.+ |++.+++.+.++.+ +.|++.+ ++-+ ....+++|.
T Consensus 173 i~~~~~yHG~t~~~~~~~~~~~~~~~~~~~p~n-----d~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr 247 (454)
T 4ao9_A 173 VVFSGGYHGGVLGFGARPSPTTVPFDFLVLPYN-----DAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALR 247 (454)
T ss_dssp EEETTCBCSTTCBBSSSBCTTSCCSEEEEECTT-----CHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHH
T ss_pred EEEeCCcCCccccccccccCccCCCCcccCCCc-----hHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHH
Confidence 7654443332 2111111122233345555665 89999998886543 4466533 1111 222499999
Q ss_pred HHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCC-CeeEEEEechhHHHHhhccCCccc--cCCcH
Q psy13354 188 HIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQ--GGPLM 263 (1342)
Q Consensus 188 ~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~~l~~~~~~~~~--~~~~~ 263 (1342)
++|++||++||+||++. |-.+.......+. .+|+++.+ |.++|. +.|++++++++++.+.....+... +...+
T Consensus 248 ~lc~~~g~lLI~DEV~t-GR~G~~~a~e~~gv~PDi~t~g--K~lggG~Piga~~~~~ei~~~~~~~~~~~~h~~T~~gn 324 (454)
T 4ao9_A 248 ESATQVGALLVFDEVMT-SRLAPHGLANKLGIRSDLTTLG--KYIGGGMSFGAFGGRADVMALFDPRTGPLAHSGTFNNN 324 (454)
T ss_dssp HHHHHHTCEEEEECTTG-GGGSTTCHHHHHTCCCSEEEEE--GGGGTTSSCEEEEECHHHHGGGCTTTCSCCCCCTTTTC
T ss_pred HHHhhcCCEEEEECCCc-CCCccccchhccCCCCcEEEec--cccCCCCcceeeeeHHHHHHHHhhccCCccccCCCCCC
Confidence 99999999999999986 5332211000111 25888655 998543 338899999999887653222211 12235
Q ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh
Q psy13354 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ 301 (1342)
Q Consensus 264 ~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~ 301 (1342)
|..+|++.+.++.+.+ ++..+++.++.++|++.|++
T Consensus 325 Pla~AAala~L~~l~~--~~~~~~~~~~g~~l~~~L~~ 360 (454)
T 4ao9_A 325 VMTMAAGYAGLTKLFT--PEAAGALAERGEALRARLNA 360 (454)
T ss_dssp HHHHHHHHHHHHHTSC--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc--cChhHHHHHHHHHHHHHHHH
Confidence 6777777777777642 34567788888888888865
No 300
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Probab=98.98 E-value=1.8e-13 Score=166.08 Aligned_cols=293 Identities=11% Similarity=0.031 Sum_probs=167.8
Q ss_pred cCceeeeecCC--CC---cHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHh-CCCCceEecCCHHH
Q psy13354 27 NNNIELIASEN--YT---SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIF-NAEAANVQPHSGSQ 100 (1342)
Q Consensus 27 ~~~i~l~a~~n--~l---~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~-g~~~~vi~~~sGs~ 100 (1342)
++.|.+.++.. .+ +|.+.+|+.+.+..... + . ... +...++++++++++ +.+.+ ++++||++
T Consensus 100 ~~yiD~~~~~~~~~lGh~~p~V~~Av~~q~~~~~~--~---~--~~~----~~~~~Lae~L~~~~p~~~~v-~~~nSGse 167 (465)
T 2yky_A 100 HAYVNFLGEYTAGLFGHSHPVIRAAVERALAVGLN--L---S--TQT----ENEALFAEAVCDRFPSIDLV-RFTNSGTE 167 (465)
Confidence 45566666543 23 46688888877743111 0 1 112 33444555888888 45454 55559999
Q ss_pred HHHHHHHHcc--CCCCEEEEeeccCCccchhhHH-hhhCCceeEEEEecCCCCCCCCHHHHHHHHHh--cCCeEEEEcCC
Q psy13354 101 ANQAVFFSVL--NPGDTIMGMSLQEGGHLTHGMM-LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKK--NKPKLIIAGAS 175 (1342)
Q Consensus 101 A~~~al~al~--~pGD~Vlv~~~~~~~~~s~~~~-~~~~g~~~~~v~~~~~~~~~id~e~Le~~i~~--~~~~liv~~~s 175 (1342)
|++.++..+. ..+++|++....+.++...... ....|....++.++++ |++++++++++ .++++|++.+.
T Consensus 168 A~~~Aik~ar~~tgr~~ii~~~~~yHG~~~~~~sg~~~~g~~~~~~~~~~~-----d~~~l~~~l~~~~~~~aavi~epv 242 (465)
T 2yky_A 168 ANLMALATATAITGRKTVLAFDGGYHGGLLNFASGHAPTNAPYHVVLGVYN-----DVEGTADLLKRHGHDCAAILVEPM 242 (465)
Confidence 9999998752 3458888766554333211110 0111221123333433 78899988874 34566666442
Q ss_pred -CCCc-----ccCHHHHHHHHHHcCCEEEEEcccchhhhhcCCCCCCCC-CCcEEEecCCccCCCC-CeeEEEEechhHH
Q psy13354 176 -AYSQ-----YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVP-FADFITSTTHKSLRGP-RGGFILMKKKYKK 247 (1342)
Q Consensus 176 -~~~~-----~~~l~~I~~la~~~gi~LIvDea~~~g~~~~~~~~~~l~-~~Divv~S~sK~l~gp-~GG~iv~~~~l~~ 247 (1342)
++++ ...+++|.++|++||++||+||+|. +..+......... .+|++ +++|++++. ..||+++++++++
T Consensus 243 ~~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~-~r~g~~~a~~~~gv~pDi~--t~sK~lg~G~piG~v~~~~~i~~ 319 (465)
T 2yky_A 243 LGAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT-SRLSGGGAQEMLGISADLT--TLGKYIGGGMSFGAFGGRRDLME 319 (465)
Confidence 2232 2249999999999999999999998 5322110011111 14654 788999441 1299999999998
Q ss_pred HHhhc--c---CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC--CcEEee-CCCCCeEEEEE
Q psy13354 248 IINSA--V---FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR--GIRIVS-GGTKSHIILVD 319 (1342)
Q Consensus 248 ~l~~~--~---~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~--g~~~~~-~~~~~~~v~i~ 319 (1342)
.+... . ..+.++ .++...+++.+.++.+.+ +.+.+++.++.+++++.|.+. ...+.. -+..+.++++.
T Consensus 320 ~l~~~~~g~~~~~~T~~--~npla~aAa~aaL~~l~~--~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~v~g~G~~~~i~ 395 (465)
T 2yky_A 320 RFDPARDGAFAHAGTFN--NNILTMSAGHAALTQIYT--RQAASDLSASGDRFRANLNRIAVENQAPLQFTGLGSLGTIH 395 (465)
Confidence 88651 1 112222 244555555555555432 245678888888888888764 122111 12345677776
Q ss_pred ccC-C------------CCCHHHHHHHHHHCCceeeec
Q psy13354 320 LRN-K------------KITGKIAESILESANIICNKN 344 (1342)
Q Consensus 320 ~~~-~------------~~~~~~~~~ll~~~GI~v~~~ 344 (1342)
+.+ . .....++..+++ +||++.+.
T Consensus 396 ~~~~~~~~~~~~~~~d~~~~~~~~~~ll~-~GV~v~p~ 432 (465)
T 2yky_A 396 FSRAPIRSAGDVRAADQQLKELFFFHMLR-KGIYLAPR 432 (465)
Confidence 653 1 113456666775 59999864
No 301
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.30 E-value=3.5e-11 Score=136.75 Aligned_cols=202 Identities=21% Similarity=0.272 Sum_probs=140.9
Q ss_pred cCCCCccccccchhhHHHHHHHHHc-----------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 385 YRPSNFNTLIGQNHISKSLINALDK-----------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 385 ~~p~~f~~lvGq~~~~~~L~~~l~~-----------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
..+.+|++++|+++++..+.+.... -.++..++|+||+|+|||+++++++..+..
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~-------------- 99 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARV-------------- 99 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTC--------------
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCC--------------
Confidence 3567899999999998887766531 134567999999999999999999998752
Q ss_pred CCCcchhhhccCCCccEEEEccCC------CcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------------H
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS------TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------------H 513 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~------~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------------~ 513 (1342)
.++.++... ......+..+++.+.. ..+.++++||++.+. .
T Consensus 100 ---------------~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~i~~iDeid~l~~~~~~~~~~~~~~~~ 160 (278)
T 1iy2_A 100 ---------------PFITASGSDFVEMFVGVGAARVRDLFETAKR----HAPCIVFIDEIDAVGRKRGSGVGGGNDERE 160 (278)
T ss_dssp ---------------CEEEEEHHHHHHSTTTHHHHHHHHHHHHHHT----SCSEEEEEETHHHHHCC--------CHHHH
T ss_pred ---------------CEEEecHHHHHHHHhhHHHHHHHHHHHHHHh----cCCcEEehhhhHhhhcccccccCCcchHHH
Confidence 123333211 0111234455554432 234699999998652 1
Q ss_pred HHHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhH-HHHHH
Q psy13354 514 HAFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSA-LNLIA 587 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~a-l~~La 587 (1342)
...+.++..++.. ....+++.+++.++.+.+++.+ |+ ..+.+++|+.++..++++.+++. ..+++++ +..++
T Consensus 161 ~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~--~~~~~~~~~~~la 238 (278)
T 1iy2_A 161 QTLNQLLVEMDGFEKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARG--KPLAEDVDLALLA 238 (278)
T ss_dssp HHHHHHHHHHTTCCTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTT--SCBCTTCCHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHcc--CCCCcccCHHHHH
Confidence 2234555555543 2345667778888889999887 55 68999999999999999877653 4555544 88899
Q ss_pred HhcCCcH-HHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 588 TGAQGSM-RDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 588 ~~~~g~l-r~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
..+.|+. +++.+.++++..++ ...||.+++++++
T Consensus 239 ~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 239 KRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 9998877 78888888877654 2459999998875
No 302
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.29 E-value=1.6e-11 Score=159.53 Aligned_cols=217 Identities=20% Similarity=0.230 Sum_probs=154.1
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|..+++|..|++++|++..++.+.+.+...... .+||+||||+|||++++.+++.+.+... |. ....
T Consensus 175 ~l~~~~~~~~~d~~iGr~~~i~~l~~~l~~~~~~-~vlL~G~~GtGKT~la~~la~~l~~~~v---------~~-~~~~- 242 (758)
T 1r6b_X 175 NLNQLARVGGIDPLIGREKELERAIQVLCRRRKN-NPLLVGESGVGKTAIAEGLAWRIVQGDV---------PE-VMAD- 242 (758)
T ss_dssp BHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSC-EEEEECCTTSSHHHHHHHHHHHHHHTCS---------CG-GGTT-
T ss_pred hHHHHHhcCCCCCccCCHHHHHHHHHHHhccCCC-CeEEEcCCCCCHHHHHHHHHHHHHhCCC---------Ch-hhcC-
Confidence 4677899999999999999999999999876544 5799999999999999999999875310 00 0000
Q ss_pred hhhccCCCccEEEEccC------CCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccC---------CHHHHHHHHHh
Q psy13354 460 VKIDNGCFMDYIEMDAA------STR--GINEMAQLLEQTIYAPINARYKIYVIDEVHML---------THHAFNAMLKT 522 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~------~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L---------~~~~~~~Ll~~ 522 (1342)
..++.++.+ ... ....++.+++.+.. ....+++|||+|.+ ..+..+.|..+
T Consensus 243 --------~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~~----~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L~~~ 310 (758)
T 1r6b_X 243 --------CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQ----DTNSILFIDEIHTIIGAGAASGGQVDAANLIKPL 310 (758)
T ss_dssp --------CEEEECCCC---CCCCCSSCHHHHHHHHHHHHSS----SSCEEEEETTTTTTTTSCCSSSCHHHHHHHHSSC
T ss_pred --------CEEEEEcHHHHhccccccchHHHHHHHHHHHHHh----cCCeEEEEechHHHhhcCCCCcchHHHHHHHHHH
Confidence 112222211 111 12345566655533 24579999999988 23345566666
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcCC-
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQG- 592 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~g- 592 (1342)
+++ ..+.+|++++.++ ...+++.+|+..+.|.+|+.++..+++...+.. +++.++++++..+++.+.+
T Consensus 311 l~~--~~~~~I~at~~~~~~~~~~~d~aL~~Rf~~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~ 388 (758)
T 1r6b_X 311 LSS--GKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKY 388 (758)
T ss_dssp SSS--CCCEEEEEECHHHHHCCCCCTTSSGGGEEEEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHH
T ss_pred HhC--CCeEEEEEeCchHHhhhhhcCHHHHhCceEEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhh
Confidence 665 3566788877532 456789999999999999999999999887765 6889999999999987654
Q ss_pred -----cHHHHHHHHHHHHhhc--------CCCCCHHHHHHHhc
Q psy13354 593 -----SMRDALSLTDQAINYS--------SEKITLNSMQEMLS 622 (1342)
Q Consensus 593 -----~lr~a~~~L~kl~~~~--------~~~It~e~V~~~v~ 622 (1342)
.+..++..++.+.... ...|+.++|.+++.
T Consensus 389 i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~ 431 (758)
T 1r6b_X 389 INDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVA 431 (758)
T ss_dssp CTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHH
T ss_pred cccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHH
Confidence 3556777777765432 23488888887764
No 303
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.28 E-value=2.1e-11 Score=158.36 Aligned_cols=199 Identities=16% Similarity=0.225 Sum_probs=136.9
Q ss_pred cccccchhhHHHHHHHHHcC--------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhh
Q psy13354 391 NTLIGQNHISKSLINALDKK--------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKI 462 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~--------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~ 462 (1342)
..++||+.+++.+..++... +..+.+||+||+|||||++|+.+++.+.+. .....|........+
T Consensus 458 ~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~-------~~~i~~s~~~~~~~~ 530 (758)
T 1r6b_X 458 MLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIE-------LLRFDMSEYMERHTV 530 (758)
T ss_dssp TTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCE-------EEEEEGGGCSSSSCC
T ss_pred hhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-------EEEEechhhcchhhH
Confidence 56999999999988887532 233479999999999999999999998521 001111111000000
Q ss_pred ccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------CcEE
Q psy13354 463 DNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP-----------KYIK 531 (1342)
Q Consensus 463 ~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~-----------~~~v 531 (1342)
. .++.. .....+.+....+.+.+... .+.||+|||++.+..+.++.|++.+++.. .+++
T Consensus 531 ~-----~l~g~-~~g~~g~~~~~~l~~~~~~~----~~~vl~lDEi~~~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~ 600 (758)
T 1r6b_X 531 S-----RLIGA-PPGYVGFDQGGLLTDAVIKH----PHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVV 600 (758)
T ss_dssp S-----SSCCC-CSCSHHHHHTTHHHHHHHHC----SSEEEEEETGGGSCHHHHHHHHHHHHHSEEEETTTEEEECTTEE
T ss_pred h-----hhcCC-CCCCcCccccchHHHHHHhC----CCcEEEEeCccccCHHHHHHHHHHhcCcEEEcCCCCEEecCCeE
Confidence 0 00000 00011111222233333333 35799999999999999999999998642 4677
Q ss_pred EEEEeCCCC-------------------------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc---------CC
Q psy13354 532 FILATTEPQ-------------------------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE---------NI 576 (1342)
Q Consensus 532 lIl~t~~~~-------------------------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~---------g~ 576 (1342)
+|+++|... .+.+.+.+|+ .++.|++++.+++..++...+.+. .+
T Consensus 601 iI~tsN~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~ 680 (758)
T 1r6b_X 601 LVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSL 680 (758)
T ss_dssp EEEEECSSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEE
T ss_pred EEEecCcchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEE
Confidence 899988643 4567899999 889999999999999999887642 35
Q ss_pred CcchhHHHHHHHhc---CCcHHHHHHHHHHHHh
Q psy13354 577 KFETSALNLIATGA---QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 577 ~i~~~al~~La~~~---~g~lr~a~~~L~kl~~ 606 (1342)
.++++++++|++.. +++.|.+.+.+++++.
T Consensus 681 ~~~~~a~~~l~~~~~~~~~g~R~l~~~i~~~~~ 713 (758)
T 1r6b_X 681 EVSQEARNWLAEKGYDRAMGARPMARVIQDNLK 713 (758)
T ss_dssp EECHHHHHHHHHHHCBTTTBTTTHHHHHHHHHT
T ss_pred EeCHHHHHHHHHhCCCcCCCchHHHHHHHHHHH
Confidence 78999999999976 5568888888877653
No 304
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.28 E-value=6.3e-11 Score=136.18 Aligned_cols=213 Identities=15% Similarity=0.244 Sum_probs=137.0
Q ss_pred cccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCcc
Q psy13354 391 NTLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMD 469 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d 469 (1342)
++++|+...++.+.+.+.. ......+||+||+|||||++|+.+++...... ......+|...........
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~----~~~v~v~~~~~~~~l~~~~----- 72 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAPSDATVLIHGDSGTGKELVARALHACSARSD----RPLVTLNCAALNESLLESE----- 72 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCSTTSCEEEESCTTSCHHHHHHHHHHHSSCSS----SCCCEEECSSCCHHHHHHH-----
T ss_pred CCcEECCHHHHHHHHHHHHHhCCCCcEEEECCCCchHHHHHHHHHHhCcccC----CCeEEEeCCCCChHHHHHH-----
Confidence 4689998888888777754 23344589999999999999999999764211 1111222322211000000
Q ss_pred EEEEccCCCcCHH-HHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-----------CCcEEEEEEeC
Q psy13354 470 YIEMDAASTRGIN-EMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-----------PKYIKFILATT 537 (1342)
Q Consensus 470 ~~~i~~~~~~~~~-~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-----------~~~~vlIl~t~ 537 (1342)
++........+.. .....++.+ +..+++|||++.++.+.++.|++.+++. +.++.+|++||
T Consensus 73 lfg~~~g~~tg~~~~~~g~~~~a-------~~g~L~LDEi~~l~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~atn 145 (304)
T 1ojl_A 73 LFGHEKGAFTGADKRREGRFVEA-------DGGTLFLDEIGDISPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATH 145 (304)
T ss_dssp HTCCCSSCCC---CCCCCHHHHH-------TTSEEEEESCTTCCHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEEES
T ss_pred hcCccccccCchhhhhcCHHHhc-------CCCEEEEeccccCCHHHHHHHHHHHhcCEeeecCCcccccCCeEEEEecC
Confidence 0000000000000 000111111 2348999999999999999999999875 24678888888
Q ss_pred CC-------CCChHHHhccE--EEEEEcCCC--HHHHHHHHHHHHH----hcC---CCcchhHHHHHHHhc-CCcHHHHH
Q psy13354 538 EP-------QKIPITVLSRC--IQFNLKKML--HHDIVNNLCYILN----KEN---IKFETSALNLIATGA-QGSMRDAL 598 (1342)
Q Consensus 538 ~~-------~kl~~~L~sR~--~~i~~~~l~--~~el~~~l~~~~~----~~g---~~i~~~al~~La~~~-~g~lr~a~ 598 (1342)
.. ..+.+.|.+|+ ..+.++|+. .+++..++...++ +.+ ..+++++++.|..+. .||+|.+.
T Consensus 146 ~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvReL~ 225 (304)
T 1ojl_A 146 RDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRELE 225 (304)
T ss_dssp SCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHHHH
T ss_pred ccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHHHH
Confidence 75 23556788886 667888887 4666655554443 333 579999999999987 99999999
Q ss_pred HHHHHHHhhcC-CCCCHHHHHH
Q psy13354 599 SLTDQAINYSS-EKITLNSMQE 619 (1342)
Q Consensus 599 ~~L~kl~~~~~-~~It~e~V~~ 619 (1342)
+.++.++..+. ..|+.+++..
T Consensus 226 ~~l~~~~~~~~~~~i~~~~l~~ 247 (304)
T 1ojl_A 226 NAIERAVVLLTGEYISERELPL 247 (304)
T ss_dssp HHHHHHHHHCCSSSBCGGGSCG
T ss_pred HHHHHHHHhCCCCcccHHhhhh
Confidence 99999888775 4588777653
No 305
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.27 E-value=6.1e-12 Score=158.47 Aligned_cols=233 Identities=17% Similarity=0.211 Sum_probs=151.2
Q ss_pred hhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCC---------
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP--------- 452 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~--------- 452 (1342)
..+|+|+.|++++||+.+++.+..++..+. .++|+||+|+|||++++.+++.+.+... +.....
T Consensus 32 ~~~~rp~~l~~i~G~~~~l~~l~~~i~~g~---~vll~Gp~GtGKTtlar~ia~~l~~~~~----~~~~~~~~~~~~~~p 104 (604)
T 3k1j_A 32 EIEVPEKLIDQVIGQEHAVEVIKTAANQKR---HVLLIGEPGTGKSMLGQAMAELLPTETL----EDILVFPNPEDENMP 104 (604)
T ss_dssp GSCCCSSHHHHCCSCHHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHTSCCSSC----EEEEEECCTTCTTSC
T ss_pred cccccccccceEECchhhHhhccccccCCC---EEEEEeCCCCCHHHHHHHHhccCCcccC----CeEEEeCCcccccCC
Confidence 468999999999999999999999999883 5899999999999999999998764210 000000
Q ss_pred -CCCCcchhhh------------------------ccCCCccEEEEccCCCc------CHHHHHHHHHHHhhcC------
Q psy13354 453 -CGKCSVCVKI------------------------DNGCFMDYIEMDAASTR------GINEMAQLLEQTIYAP------ 495 (1342)
Q Consensus 453 -c~~~~~~~~~------------------------~~~~~~d~~~i~~~~~~------~~~~i~~ii~~~~~~p------ 495 (1342)
|..|..|... .....+++..-+..... ......+++......+
T Consensus 105 ~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~ 184 (604)
T 3k1j_A 105 RIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGL 184 (604)
T ss_dssp EEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----C
T ss_pred cEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCc
Confidence 1111111100 00001111111110000 0011222322111110
Q ss_pred -------------ccCCceEEEeccCccCCHHHHHHHHHhhcCC---------------------CCcEEEEEEeCCC--
Q psy13354 496 -------------INARYKIYVIDEVHMLTHHAFNAMLKTLEEP---------------------PKYIKFILATTEP-- 539 (1342)
Q Consensus 496 -------------~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p---------------------~~~~vlIl~t~~~-- 539 (1342)
..++..+++|||++.++...++.|++.|++. |.++.+|+++|..
T Consensus 185 ~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~ 264 (604)
T 3k1j_A 185 GTPAHERVEPGMIHRAHKGVLFIDEIATLSLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTV 264 (604)
T ss_dssp CCCGGGGEECCHHHHTTTSEEEETTGGGSCHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHH
T ss_pred cccccccccCceeeecCCCEEEEechhhCCHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEEEEEecCHHHH
Confidence 0123459999999999999999999999731 2467788988875
Q ss_pred CCChHHHhccE----EEEEEcCC---CHHHHHHHHHHHHHhc-----CCCcchhHHHHHHHhc---CC-------cHHHH
Q psy13354 540 QKIPITVLSRC----IQFNLKKM---LHHDIVNNLCYILNKE-----NIKFETSALNLIATGA---QG-------SMRDA 597 (1342)
Q Consensus 540 ~kl~~~L~sR~----~~i~~~~l---~~~el~~~l~~~~~~~-----g~~i~~~al~~La~~~---~g-------~lr~a 597 (1342)
..+.++|.+|| ..++|... ..+.+..++...++.. ...+++++++.|++.+ .| ++|.+
T Consensus 265 ~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l 344 (604)
T 3k1j_A 265 DKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKRAGRKGHLTLRLRDL 344 (604)
T ss_dssp HHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHTTCSTTEEECCHHHH
T ss_pred hhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhhhccccccccCHHHH
Confidence 57889999998 45666543 4455666665555432 2579999999999865 45 69999
Q ss_pred HHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 598 LSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 598 ~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
.++++.+..++ ...|+.++|.+++
T Consensus 345 ~~llr~A~~~A~~~~~~~I~~edv~~A~ 372 (604)
T 3k1j_A 345 GGIVRAAGDIAVKKGKKYVEREDVIEAV 372 (604)
T ss_dssp HHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 99999877664 2359999888877
No 306
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.26 E-value=9.7e-12 Score=161.26 Aligned_cols=198 Identities=17% Similarity=0.185 Sum_probs=141.5
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|..+++|..|++++|++..++.+...+......| +||+||||||||++|+.+++.+.+.... .....
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~~~~~~-vLL~G~pGtGKT~la~~la~~l~~~~~p----~~l~~------- 236 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNN-PVLIGEPGVGKTAIAEGLAQQIINNEVP----EILRD------- 236 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHCSSSCE-EEEESCTTTTTHHHHHHHHHHHHSSCSC----TTTSS-------
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhCCCCCC-eEEECCCCCCHHHHHHHHHHHHhcCCCC----hhhcC-------
Confidence 46788999999999999999999999998866555 7999999999999999999998642100 00000
Q ss_pred hhhccCCCccEEEEccC-CCc--CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEe
Q psy13354 460 VKIDNGCFMDYIEMDAA-STR--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~-~~~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t 536 (1342)
..++.++.. ... ....++.+++.+.. ..+.+++|| .+.+..+.|+..++. ..+.+|++|
T Consensus 237 --------~~~~~~~~g~~~~G~~e~~l~~~~~~~~~----~~~~iLfiD----~~~~~~~~L~~~l~~--~~v~~I~at 298 (758)
T 3pxi_A 237 --------KRVMTLDMGTKYRGEFEDRLKKVMDEIRQ----AGNIILFID----AAIDASNILKPSLAR--GELQCIGAT 298 (758)
T ss_dssp --------CCEECC----------CTTHHHHHHHHHT----CCCCEEEEC----C--------CCCTTS--SSCEEEEEC
T ss_pred --------CeEEEecccccccchHHHHHHHHHHHHHh----cCCEEEEEc----CchhHHHHHHHHHhc--CCEEEEeCC
Confidence 112222221 101 11246667766654 345699999 444567888888885 467788888
Q ss_pred CCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHh----cCCCcchhHHHHHHHhcC------CcHHHHHHHH
Q psy13354 537 TEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNK----ENIKFETSALNLIATGAQ------GSMRDALSLT 601 (1342)
Q Consensus 537 ~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~----~g~~i~~~al~~La~~~~------g~lr~a~~~L 601 (1342)
|... .+.+++.+||..+.|++|+.+++..++...+.. +++.++++++..+++.+. ..+++++.++
T Consensus 299 ~~~~~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~ai~ll 378 (758)
T 3pxi_A 299 TLDEYRKYIEKDAALERRFQPIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKAIDLI 378 (758)
T ss_dssp CTTTTHHHHTTCSHHHHSEEEEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHHHHHH
T ss_pred ChHHHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHHHHHH
Confidence 8877 578899999999999999999999999977765 688999999999998754 3457788888
Q ss_pred HHHHhh
Q psy13354 602 DQAINY 607 (1342)
Q Consensus 602 ~kl~~~ 607 (1342)
+.+...
T Consensus 379 ~~a~~~ 384 (758)
T 3pxi_A 379 DEAGSK 384 (758)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876644
No 307
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.26 E-value=1.2e-11 Score=131.21 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=115.3
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|..+++|..|++++|++..++.+.+.+..+.. +.++|+||+|+|||++++.+++.+.+..... .
T Consensus 10 ~~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~-~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~------~------- 75 (195)
T 1jbk_A 10 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQRRTK-NNPVLIGEPGVGKTAIVEGLAQRIINGEVPE------G------- 75 (195)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSS-CEEEEECCTTSCHHHHHHHHHHHHHHTCSCG------G-------
T ss_pred HHHHHHHhhccccccccchHHHHHHHHHHhcCCC-CceEEECCCCCCHHHHHHHHHHHHHhCCCch------h-------
Confidence 3578899999999999999999999999988654 4589999999999999999999987521000 0
Q ss_pred hhhhccCCCccEEEEccCC----CcCH----HHHHHHHHHHhhcCccCCceEEEeccCccCCH--------HHHHHHHHh
Q psy13354 459 CVKIDNGCFMDYIEMDAAS----TRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------HAFNAMLKT 522 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~----~~~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------~~~~~Ll~~ 522 (1342)
.....++.++... .... ..+.+++..+.. ...+.+++|||++.+.. ...+.|..+
T Consensus 76 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~ 146 (195)
T 1jbk_A 76 ------LKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAK---QEGNVILFIDELHTMVGAGKADGAMDAGNMLKPA 146 (195)
T ss_dssp ------GTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHH---STTTEEEEEETGGGGTT------CCCCHHHHHHH
T ss_pred ------hcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHhh---cCCCeEEEEeCHHHHhccCcccchHHHHHHHHHh
Confidence 0011233333211 1111 234444443332 23456999999998852 225667777
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHH
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l 567 (1342)
++.. .+.+|++++... .+.+++.+|+..+.+.+|+.++..+++
T Consensus 147 ~~~~--~~~~i~~~~~~~~~~~~~~~~~l~~r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 147 LARG--ELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHTT--SCCEEEEECHHHHHHHTTTCHHHHTTEEEEECCCCCHHHHHTTC
T ss_pred hccC--CeEEEEeCCHHHHHHHHhcCHHHHHHhceeecCCCCHHHHHHHh
Confidence 7664 566788887765 677899999999999999999987764
No 308
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.25 E-value=1.1e-11 Score=160.70 Aligned_cols=186 Identities=18% Similarity=0.270 Sum_probs=135.3
Q ss_pred ccccccchhhHHHHHHHHHcCC--------CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhh
Q psy13354 390 FNTLIGQNHISKSLINALDKKR--------LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVK 461 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l~~~~--------~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~ 461 (1342)
..+++||+.+++.+..++.... ....+||+||+|||||++|+++++.+....
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~-------------------- 549 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDE-------------------- 549 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCT--------------------
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC--------------------
Confidence 3679999999999988886432 112699999999999999999999985311
Q ss_pred hccCCCccEEEEccCCCcCH--HHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcC-----------CCC
Q psy13354 462 IDNGCFMDYIEMDAASTRGI--NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE-----------PPK 528 (1342)
Q Consensus 462 ~~~~~~~d~~~i~~~~~~~~--~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~-----------p~~ 528 (1342)
..++.++++..... .....+.+..... .+.+|+|||++.++.+.++.|++.+++ ...
T Consensus 550 ------~~~i~i~~s~~~~~~~~~~~~l~~~~~~~----~~~vl~lDEi~~~~~~~~~~Ll~~le~g~~~~~~g~~~~~~ 619 (758)
T 3pxi_A 550 ------ESMIRIDMSEYMEKHSTSGGQLTEKVRRK----PYSVVLLDAIEKAHPDVFNILLQVLEDGRLTDSKGRTVDFR 619 (758)
T ss_dssp ------TCEEEEEGGGGCSSCCCC---CHHHHHHC----SSSEEEEECGGGSCHHHHHHHHHHHHHSBCC-----CCBCT
T ss_pred ------cceEEEechhcccccccccchhhHHHHhC----CCeEEEEeCccccCHHHHHHHHHHhccCeEEcCCCCEeccC
Confidence 12444444321110 0011112222222 345999999999999999999999986 345
Q ss_pred cEEEEEEeCCCCC------------ChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc---------CCCcchhHHHHH
Q psy13354 529 YIKFILATTEPQK------------IPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE---------NIKFETSALNLI 586 (1342)
Q Consensus 529 ~~vlIl~t~~~~k------------l~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~---------g~~i~~~al~~L 586 (1342)
++++|++||.... +.+.+.+|+ .++.|++++.+++..++...+... .+.++++++++|
T Consensus 620 ~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l 699 (758)
T 3pxi_A 620 NTILIMTSNVGASEKDKVMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKV 699 (758)
T ss_dssp TCEEEEEESSSTTCCHHHHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHH
T ss_pred CeEEEEeCCCChhhHHHHHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHH
Confidence 7889999986543 668899999 999999999999999988877652 457899999999
Q ss_pred HHh---cCCcHHHHHHHHHHHH
Q psy13354 587 ATG---AQGSMRDALSLTDQAI 605 (1342)
Q Consensus 587 a~~---~~g~lr~a~~~L~kl~ 605 (1342)
++. ..|+.|.+.+.+++++
T Consensus 700 ~~~~~~~~~~~R~L~~~i~~~v 721 (758)
T 3pxi_A 700 AEEGVDLEYGARPLRRAIQKHV 721 (758)
T ss_dssp HGGGCCTTTTTTTHHHHHHHHT
T ss_pred HHhCCCCCCCChHHHHHHHHHH
Confidence 885 4688888888887654
No 309
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.24 E-value=1.2e-11 Score=162.00 Aligned_cols=205 Identities=19% Similarity=0.188 Sum_probs=143.1
Q ss_pred HHHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcc
Q psy13354 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~ 458 (1342)
..|..+++|..|++++|++..++.+.+.+..+...+ ++|+||||+|||++++.+++.+.+... +.
T Consensus 158 ~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~~~~~~-vlL~G~pG~GKT~la~~la~~l~~~~~--------------p~ 222 (854)
T 1qvr_A 158 IDLTRLAAEGKLDPVIGRDEEIRRVIQILLRRTKNN-PVLIGEPGVGKTAIVEGLAQRIVKGDV--------------PE 222 (854)
T ss_dssp EEHHHHHHTTCSCCCCSCHHHHHHHHHHHHCSSCCC-CEEEECTTSCHHHHHHHHHHHHHHTCS--------------CT
T ss_pred HhHHHHHhcCCCcccCCcHHHHHHHHHHHhcCCCCc-eEEEcCCCCCHHHHHHHHHHHHhcCCC--------------ch
Confidence 457889999999999999999999999998876554 799999999999999999999864210 00
Q ss_pred hhhhccCCCccEEEEccCCCc--------CHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------HHHHHHHHHh
Q psy13354 459 CVKIDNGCFMDYIEMDAASTR--------GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------HHAFNAMLKT 522 (1342)
Q Consensus 459 ~~~~~~~~~~d~~~i~~~~~~--------~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------~~~~~~Ll~~ 522 (1342)
+. ....++.++.+... ....+..++..+... ..+.|++|||+|.+. .+..+.|..+
T Consensus 223 ~l-----~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~---~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~ 294 (854)
T 1qvr_A 223 GL-----KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQS---QGEVILFIDELHTVVGAGKAEGAVDAGNMLKPA 294 (854)
T ss_dssp TS-----TTCEEEEECC-----------CHHHHHHHHHHHHHTT---CSSEEEEECCC-------------------HHH
T ss_pred hh-----cCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhc---CCCeEEEEecHHHHhccCCccchHHHHHHHHHH
Confidence 00 01234444433211 122355666655432 245699999999885 3456678888
Q ss_pred hcCCCCcEEEEEEeCCCC----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHH----hcCCCcchhHHHHHHHhcCC--
Q psy13354 523 LEEPPKYIKFILATTEPQ----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILN----KENIKFETSALNLIATGAQG-- 592 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~----~~g~~i~~~al~~La~~~~g-- 592 (1342)
++.. .+.+|++++... .+.+++.+||..+.+++|+.++...++...+. .+++.++++++..+++.+.+
T Consensus 295 l~~~--~i~~I~at~~~~~~~~~~d~aL~rRf~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i 372 (854)
T 1qvr_A 295 LARG--ELRLIGATTLDEYREIEKDPALERRFQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYI 372 (854)
T ss_dssp HHTT--CCCEEEEECHHHHHHHTTCTTTCSCCCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHC
T ss_pred HhCC--CeEEEEecCchHHhhhccCHHHHhCCceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhc
Confidence 8764 566788877553 35679999998899999999999999987665 35889999999999998744
Q ss_pred ----cHHHHHHHHHHHHhhc
Q psy13354 593 ----SMRDALSLTDQAINYS 608 (1342)
Q Consensus 593 ----~lr~a~~~L~kl~~~~ 608 (1342)
.+++++.+++.+....
T Consensus 373 ~~~~lp~kai~lldea~a~~ 392 (854)
T 1qvr_A 373 TERRLPDKAIDLIDEAAARL 392 (854)
T ss_dssp CSSCTHHHHHHHHHHHHHHH
T ss_pred ccccChHHHHHHHHHHHHHH
Confidence 3788888888876554
No 310
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.24 E-value=2.5e-11 Score=154.17 Aligned_cols=187 Identities=15% Similarity=0.197 Sum_probs=137.5
Q ss_pred CCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+++.|.+.+++.|++.+.- -+.+.++|||||||||||++|+++|+++++
T Consensus 199 ~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~-------------- 264 (806)
T 3cf2_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA-------------- 264 (806)
T ss_dssp SSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTC--------------
T ss_pred CCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCC--------------
Confidence 345899999999999999888741 146778999999999999999999998873
Q ss_pred CCCcchhhhccCCCccEEEEccCC----C--cCHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HHHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAAS----T--RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HHAF 516 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~----~--~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~~~ 516 (1342)
.++.+++++ . .+...++++++.+.. ..+.||+|||+|.+. ....
T Consensus 265 ---------------~~~~v~~~~l~sk~~gese~~lr~lF~~A~~----~~PsIIfIDEiDal~~~r~~~~~~~~~riv 325 (806)
T 3cf2_A 265 ---------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEVERRIV 325 (806)
T ss_dssp ---------------EEEEEEHHHHHSSCTTHHHHHHHHHHHHHTT----SCSEEEEEESGGGTCCTTTTCCCTTHHHHH
T ss_pred ---------------eEEEEEhHHhhcccchHHHHHHHHHHHHHHH----cCCeEEEEehhcccccccCCCCChHHHHHH
Confidence 356665432 1 122357777776643 345699999999873 1245
Q ss_pred HHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcC
Q psy13354 517 NAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQ 591 (1342)
Q Consensus 517 ~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~ 591 (1342)
+.|+..++.. ...+++|.+||+++.+++++++ |+ ..++++.|+.++..++++.++++.... ++..+..|++.+.
T Consensus 326 ~~LL~~mdg~~~~~~V~VIaaTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~ 404 (806)
T 3cf2_A 326 SQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETH 404 (806)
T ss_dssp HHHHTHHHHCCGGGCEEEEEECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCC
T ss_pred HHHHHHHhcccccCCEEEEEecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcC
Confidence 6777777643 3468888999999999999998 77 789999999999999998766554332 2334778888876
Q ss_pred C-cHHHHHHHHHHHHh
Q psy13354 592 G-SMRDALSLTDQAIN 606 (1342)
Q Consensus 592 g-~lr~a~~~L~kl~~ 606 (1342)
| ...++.+++..+..
T Consensus 405 GfsgaDL~~Lv~eA~~ 420 (806)
T 3cf2_A 405 GHVGADLAALCSEAAL 420 (806)
T ss_dssp SCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH
Confidence 5 55666666655543
No 311
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.22 E-value=1e-11 Score=162.81 Aligned_cols=202 Identities=19% Similarity=0.277 Sum_probs=142.7
Q ss_pred CccccccchhhHHHHHHHHHcCC--------CCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchh
Q psy13354 389 NFNTLIGQNHISKSLINALDKKR--------LHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~--------~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~ 460 (1342)
.+++++||+.+++.+..++.... ..+.+||+||+|||||++|+.+++.+.+.. .......|..+..+.
T Consensus 556 l~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~----~~~i~i~~~~~~~~~ 631 (854)
T 1qvr_A 556 LHKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTE----EAMIRIDMTEYMEKH 631 (854)
T ss_dssp HHHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSG----GGEEEECTTTCCSSG
T ss_pred HhcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCC----CcEEEEechhccchh
Confidence 35679999999999988886432 225799999999999999999999996421 122334455544443
Q ss_pred hhccC--CCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC-----------
Q psy13354 461 KIDNG--CFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP----------- 527 (1342)
Q Consensus 461 ~~~~~--~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~----------- 527 (1342)
..... ..+.++ +.+....+.+.+...| +.+|+|||++.++.+.++.|++.+++..
T Consensus 632 ~~s~l~g~~~~~~--------G~~~~g~l~~~~~~~~----~~vl~lDEi~~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~ 699 (854)
T 1qvr_A 632 AVSRLIGAPPGYV--------GYEEGGQLTEAVRRRP----YSVILFDEIEKAHPDVFNILLQILDDGRLTDSHGRTVDF 699 (854)
T ss_dssp GGGGC----------------------CHHHHHHHCS----SEEEEESSGGGSCHHHHHHHHHHHTTTEECCSSSCCEEC
T ss_pred HHHHHcCCCCCCc--------CccccchHHHHHHhCC----CeEEEEecccccCHHHHHHHHHHhccCceECCCCCEecc
Confidence 32221 111111 1111122333333333 4699999999999999999999999753
Q ss_pred CcEEEEEEeCC--------------------------CCCChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc------
Q psy13354 528 KYIKFILATTE--------------------------PQKIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE------ 574 (1342)
Q Consensus 528 ~~~vlIl~t~~--------------------------~~kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~------ 574 (1342)
.++++|++||. ...+.+.+.+|+ .++.|.|++.+++..++...+++.
T Consensus 700 ~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~ 779 (854)
T 1qvr_A 700 RNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAE 779 (854)
T ss_dssp TTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 36778998886 224557888999 888999999999999988777631
Q ss_pred ---CCCcchhHHHHHHHhc---CCcHHHHHHHHHHHHh
Q psy13354 575 ---NIKFETSALNLIATGA---QGSMRDALSLTDQAIN 606 (1342)
Q Consensus 575 ---g~~i~~~al~~La~~~---~g~lr~a~~~L~kl~~ 606 (1342)
.+.++++++++|++.+ .|+.|.+.+.+++++.
T Consensus 780 ~~~~~~~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~ 817 (854)
T 1qvr_A 780 KRISLELTEAAKDFLAERGYDPVFGARPLRRVIQRELE 817 (854)
T ss_dssp TTCEEEECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTH
T ss_pred CCceEEECHHHHHHHHHcCCCCCCChHHHHHHHHHHHH
Confidence 3569999999999976 4999999999887653
No 312
>2cul_A Glucose-inhibited division protein A-related PROT probable oxidoreductase; rossmann fold, protein-FAD complex; HET: FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Probab=99.21 E-value=1.6e-11 Score=135.54 Aligned_cols=118 Identities=23% Similarity=0.354 Sum_probs=109.5
Q ss_pred hHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecccCCCceeEecccccCCCCCCCcc
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS 884 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~ 884 (1342)
||..|.+.+++.+++.+++++++.+|+++..+++++.+|.+.+|.++.||.||+|||+|++..+++|......|+.|..+
T Consensus 66 ~~~~~~~~l~~~~~~~~gv~i~~~~v~~i~~~~~~v~~v~~~~g~~i~a~~VV~A~G~~s~~~~~~G~~~~~~g~~g~~~ 145 (232)
T 2cul_A 66 RVWAFHARAKYLLEGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGRLSEAS 145 (232)
T ss_dssp CHHHHHHHHHHHHHTCTTEEEEECCEEEEEEETTEEEEEEETTSCCEECSEEEECCTTCSSCEEEETTEEESEEETTEEC
T ss_pred CHHHHHHHHHHHHHcCCCcEEEEeEEEEEEEeCCEEEEEEECCCCEEECCEEEECCCCChhhceecCCccCCCCCCcccc
Confidence 88999999999999989999998899999999999999999999899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHcCCCccccc------cCCCcccccCccccccceeecCC
Q psy13354 885 TTSLAKRLKELQLSHGRLK------TGTPPRIDKRTIDFSKMEEQIGD 926 (1342)
Q Consensus 885 s~~l~~~l~~~g~~~~~~~------~~~~~r~~~~si~~~~~~~~~~d 926 (1342)
+..|+..|++.|+++.|++ +|+|| .+|+|+.+..+++|
T Consensus 146 ~~~l~~~l~~~g~~~~~~~~~~~~~~g~p~----~~~~~~~~~~~~~~ 189 (232)
T 2cul_A 146 YPDLLEDLSRLGFRFVEREGEVPETPSTPG----YRVRYLAFHPEEWE 189 (232)
T ss_dssp CSHHHHHHHHTTCCEEEEEEEEC-----CC----EEEEEEEECGGGEE
T ss_pred hhhhCHHHHhCCCeEEccccccCcCCCCCC----ccCchhhcccCCCC
Confidence 9999999999999999998 79999 68999999999988
No 313
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.17 E-value=3.2e-11 Score=127.56 Aligned_cols=155 Identities=21% Similarity=0.220 Sum_probs=107.6
Q ss_pred HHhhccCCCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 380 ~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
.|..+++|..|++++|++..++.+.+.+..+... .++|+||+|+|||++++.+++.+.+... +.
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~~~~~-~vll~G~~G~GKT~la~~~~~~~~~~~~---------~~------ 74 (187)
T 2p65_A 11 DLTALARAGKLDPVIGRDTEIRRAIQILSRRTKN-NPILLGDPGVGKTAIVEGLAIKIVQGDV---------PD------ 74 (187)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTSSSSC-EEEEESCGGGCHHHHHHHHHHHHHTTCS---------CT------
T ss_pred HHHHHHhccccchhhcchHHHHHHHHHHhCCCCC-ceEEECCCCCCHHHHHHHHHHHHHhcCC---------cc------
Confidence 4778899999999999999999999999876544 5799999999999999999999864210 00
Q ss_pred hhhccCCCccEEEEccCC----CcCH----HHHHHHHHHHhhcCccCCceEEEeccCccCC---------HHHHHHHHHh
Q psy13354 460 VKIDNGCFMDYIEMDAAS----TRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLT---------HHAFNAMLKT 522 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~----~~~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~---------~~~~~~Ll~~ 522 (1342)
......++.++... .... ..+.+++..+... ..+.+++|||++.+. .+..+.|...
T Consensus 75 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~ 147 (187)
T 2p65_A 75 ----SLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQDA---EGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPM 147 (187)
T ss_dssp ----TTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHHHT---TTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHH
T ss_pred ----hhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHHhc---CCceEEEEeCHHHhcccccccccchHHHHHHHHH
Confidence 00011233333211 0111 2244444444332 345699999999885 3456677777
Q ss_pred hcCCCCcEEEEEEeCCCC-----CChHHHhccEEEEEEcCCC
Q psy13354 523 LEEPPKYIKFILATTEPQ-----KIPITVLSRCIQFNLKKML 559 (1342)
Q Consensus 523 Le~p~~~~vlIl~t~~~~-----kl~~~L~sR~~~i~~~~l~ 559 (1342)
+++ ..+++|++++.+. .+.+++.+||..+.+.+|+
T Consensus 148 ~~~--~~~~ii~~~~~~~~~~~~~~~~~l~~R~~~i~i~~p~ 187 (187)
T 2p65_A 148 LAR--GELRCIGATTVSEYRQFIEKDKALERRFQQILVEQPS 187 (187)
T ss_dssp HHT--TCSCEEEEECHHHHHHHTTTCHHHHHHEEEEECCSCC
T ss_pred Hhc--CCeeEEEecCHHHHHHHHhccHHHHHhcCcccCCCCC
Confidence 776 3566788887654 5778999999989988774
No 314
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.17 E-value=5e-11 Score=140.94 Aligned_cols=201 Identities=23% Similarity=0.302 Sum_probs=133.7
Q ss_pred ccccchhhHHHHHHHHHc------------C--CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc
Q psy13354 392 TLIGQNHISKSLINALDK------------K--RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~------------~--~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~ 457 (1342)
.++||+.+++.+..++.. + ..+..+||+||||||||++|+++++.++.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~------------------ 77 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDV------------------ 77 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTC------------------
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCC------------------
Confidence 379999999999888831 1 13456999999999999999999999863
Q ss_pred chhhhccCCCccEEEEccCCCcC--------HHHHHHHHHHHhhcCccCCceEEEeccCccCCHH--------------H
Q psy13354 458 VCVKIDNGCFMDYIEMDAASTRG--------INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH--------------A 515 (1342)
Q Consensus 458 ~~~~~~~~~~~d~~~i~~~~~~~--------~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~--------------~ 515 (1342)
.++.++++.... ...+..++..+..........+++|||++.+... .
T Consensus 78 -----------~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~ 146 (363)
T 3hws_A 78 -----------PFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGV 146 (363)
T ss_dssp -----------CEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHH
T ss_pred -----------CEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHH
Confidence 244444432110 1123333333211111134569999999988644 7
Q ss_pred HHHHHHhhcCC---------------------CCcEEEEEEeCCC----------CC-----------------------
Q psy13354 516 FNAMLKTLEEP---------------------PKYIKFILATTEP----------QK----------------------- 541 (1342)
Q Consensus 516 ~~~Ll~~Le~p---------------------~~~~vlIl~t~~~----------~k----------------------- 541 (1342)
++.|++.|+.. ..+.++|++++.. .+
T Consensus 147 ~~~Ll~~leg~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~ 226 (363)
T 3hws_A 147 QQALLKLIEGTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELL 226 (363)
T ss_dssp HHHHHHHHHCC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHH
T ss_pred HHHHHHHhcCceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHH
Confidence 89999999831 1234555655532 11
Q ss_pred ------------ChHHHhccE-EEEEEcCCCHHHHHHHHHH----HH-------HhcC--CCcchhHHHHHHHh---cCC
Q psy13354 542 ------------IPITVLSRC-IQFNLKKMLHHDIVNNLCY----IL-------NKEN--IKFETSALNLIATG---AQG 592 (1342)
Q Consensus 542 ------------l~~~L~sR~-~~i~~~~l~~~el~~~l~~----~~-------~~~g--~~i~~~al~~La~~---~~g 592 (1342)
+.+.+.+|+ .++.|.|++.+++.+++.. .+ ...+ +.+++++++.|++. ..+
T Consensus 227 ~~v~~~~l~~~~~~~~l~~R~~~~~~~~pl~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~ 306 (363)
T 3hws_A 227 AQVEPEDLIKFGLIPEFIGRLPVVATLNELSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKT 306 (363)
T ss_dssp HTCCHHHHHHHTCCHHHHTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTC
T ss_pred HhCCHHHHHHcCCCHHHhcccCeeeecCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCcc
Confidence 567889999 6777999999998888764 22 2224 45899999999975 367
Q ss_pred cHHHHHHHHHHHHhhc-----C--C----CCCHHHHHHHh
Q psy13354 593 SMRDALSLTDQAINYS-----S--E----KITLNSMQEML 621 (1342)
Q Consensus 593 ~lr~a~~~L~kl~~~~-----~--~----~It~e~V~~~v 621 (1342)
+.|.+.+.+++++.-. . . .||.++|++..
T Consensus 307 gaR~L~~~ie~~~~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 307 GARGLRSIVEAALLDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp TTTTHHHHHHHHHHHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred CchHHHHHHHHHHHHHHHhcccccCCceeEEcHHHHhCcC
Confidence 7888888888765432 1 1 16777766554
No 315
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.16 E-value=9.3e-10 Score=124.39 Aligned_cols=206 Identities=17% Similarity=0.185 Sum_probs=132.1
Q ss_pred CCCCccccccchhhHHHHHHHHH------------cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALD------------KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~------------~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
...+|+++.|.+.+++.|.+.+. +-.++..++|+||+|+|||+++++++..+..
T Consensus 5 ~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~-------------- 70 (274)
T 2x8a_A 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGL-------------- 70 (274)
T ss_dssp -------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTC--------------
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCC--------------
Confidence 35689999999999999887652 1245667999999999999999999998752
Q ss_pred CCCcchhhhccCCCccEEEEccCCCc--CH----HHHHHHHHHHhhcCccCCceEEEeccCccCCH-----------HHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTR--GI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-----------HAF 516 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~--~~----~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-----------~~~ 516 (1342)
.++.+++.... .. ..++.+.+.+.. ..+.++++||++.+.. ...
T Consensus 71 ---------------~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~----~~p~i~~~Deid~~~~~r~~~~~~~~~~~~ 131 (274)
T 2x8a_A 71 ---------------NFISVKGPELLNMYVGESERAVRQVFQRAKN----SAPCVIFFDEVDALCPRRSDRETGASVRVV 131 (274)
T ss_dssp ---------------EEEEEETTTTCSSTTHHHHHHHHHHHHHHHH----TCSEEEEEETCTTTCC---------CTTHH
T ss_pred ---------------CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHh----cCCCeEeeehhhhhhcccCCCcchHHHHHH
Confidence 34555543221 11 234444444322 2245999999997631 134
Q ss_pred HHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhc-CCCcc-hhHHHHHHHh
Q psy13354 517 NAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKE-NIKFE-TSALNLIATG 589 (1342)
Q Consensus 517 ~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~-g~~i~-~~al~~La~~ 589 (1342)
+.++..|+.. ...++++.++|.++.+++++.+ |+ ..+.++.|+.++..++++..++.. ...++ +..++.++..
T Consensus 132 ~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~ 211 (274)
T 2x8a_A 132 NQLLTEMDGLEARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGD 211 (274)
T ss_dssp HHHHHHHHTCCSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTC
T ss_pred HHHHHhhhcccccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHh
Confidence 5666666543 2456677788999999999987 77 789999999999999998877542 22332 3346777764
Q ss_pred c---CCcHHHHHHHHHHHHhhc---------------CCCCCHHHHHHHhccC
Q psy13354 590 A---QGSMRDALSLTDQAINYS---------------SEKITLNSMQEMLSII 624 (1342)
Q Consensus 590 ~---~g~lr~a~~~L~kl~~~~---------------~~~It~e~V~~~v~~~ 624 (1342)
+ |-+..++.+++..+...+ ...|+.+|+++++...
T Consensus 212 ~~~~g~sgadl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~ 264 (274)
T 2x8a_A 212 LRCDCYTGADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKV 264 (274)
T ss_dssp SGGGSCCHHHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTC
T ss_pred hccCCcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHh
Confidence 3 446666666666544332 1137777777766543
No 316
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.16 E-value=2.5e-11 Score=154.22 Aligned_cols=185 Identities=18% Similarity=0.258 Sum_probs=118.6
Q ss_pred CCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCC
Q psy13354 387 PSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCG 454 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~ 454 (1342)
..+|+++.|.+++++.|.+.+.. -..+..+|||||||||||.+|+++|.+++.
T Consensus 473 ~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~--------------- 537 (806)
T 3cf2_A 473 QVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQA--------------- 537 (806)
T ss_dssp CCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTC---------------
T ss_pred CCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCC---------------
Confidence 34689999999999999888742 134567999999999999999999999873
Q ss_pred CCcchhhhccCCCccEEEEccC------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH--------------H
Q psy13354 455 KCSVCVKIDNGCFMDYIEMDAA------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH--------------H 514 (1342)
Q Consensus 455 ~~~~~~~~~~~~~~d~~~i~~~------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~--------------~ 514 (1342)
.++.++.+ ...+...++++++.+... .+-||+|||+|.+.. .
T Consensus 538 --------------~f~~v~~~~l~s~~vGese~~vr~lF~~Ar~~----~P~IifiDEiDsl~~~R~~~~~~~~~~~~r 599 (806)
T 3cf2_A 538 --------------NFISIKGPELLTMWFGESEANVREIFDKARQA----APCVLFFDELDSIAKARGGNIGDGGGAADR 599 (806)
T ss_dssp --------------EEEECCHHHHHTTTCSSCHHHHHHHHHHHHTT----CSEEEECSCGGGCC--------------CH
T ss_pred --------------ceEEeccchhhccccchHHHHHHHHHHHHHHc----CCceeechhhhHHhhccCCCCCCCchHHHH
Confidence 35555432 123446788888887643 235999999998731 1
Q ss_pred HHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 515 AFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 515 ~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
..+.||..++.. ...+++|.+||.++.+++++++ |+ ..+.++.|+.++..++++.++++..+. ++..++.|++.
T Consensus 600 v~~~lL~~mdg~~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~ 678 (806)
T 3cf2_A 600 VINQILTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKM 678 (806)
T ss_dssp HHHHHHHHHHSSCSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC---------
T ss_pred HHHHHHHHHhCCCCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHh
Confidence 367788888743 4567788899999999999997 88 788999999999999988777654432 23346777776
Q ss_pred cCC-cHHHHHHHHHHHH
Q psy13354 590 AQG-SMRDALSLTDQAI 605 (1342)
Q Consensus 590 ~~g-~lr~a~~~L~kl~ 605 (1342)
+.| +-.++.+++..+.
T Consensus 679 t~g~SGadi~~l~~~A~ 695 (806)
T 3cf2_A 679 TNGFSGADLTEICQRAC 695 (806)
T ss_dssp -------CHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 544 3333444444433
No 317
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.15 E-value=5.4e-10 Score=134.22 Aligned_cols=235 Identities=16% Similarity=0.194 Sum_probs=144.3
Q ss_pred HhhccCCCCccccccchhhHHHHHHHH-H---cC--CCCcEEEE--EccCcccHHHHHHHHHHHhccCCC--CCCCCccc
Q psy13354 381 LARKYRPSNFNTLIGQNHISKSLINAL-D---KK--RLHHAYLF--TGTRGVGKTTISRILAKCLNCIGI--DGNGGITS 450 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~~~~~~L~~~l-~---~~--~~~~~~Ll--~G~~G~GKT~la~~iak~L~~~~~--~~~~~~~~ 450 (1342)
+..+|.| ++++|++..++.|...+ . .+ ..++.+++ +||+|+|||++++.+++.+..... .......+
T Consensus 15 ~~~~~~p---~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 91 (412)
T 1w5s_A 15 FDENYIP---PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAY 91 (412)
T ss_dssp GSTTCCC---SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cCCccCC---CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEE
Confidence 4445666 67899999888888877 4 23 44567899 999999999999999998753100 00000112
Q ss_pred CCCCCCcchhhhccCCCccEEEEcc-CCCcCHHH-HHHHHHHHhhcCccCCceEEEeccCccCC------HHHHHHHHHh
Q psy13354 451 QPCGKCSVCVKIDNGCFMDYIEMDA-ASTRGINE-MAQLLEQTIYAPINARYKIYVIDEVHMLT------HHAFNAMLKT 522 (1342)
Q Consensus 451 ~~c~~~~~~~~~~~~~~~d~~~i~~-~~~~~~~~-i~~ii~~~~~~p~~~~~rvviIDE~~~L~------~~~~~~Ll~~ 522 (1342)
..|..+.+...+.......+ .... ........ +..+.+.+. ..+.+.+|+|||+|.+. .+....|++.
T Consensus 92 ~~~~~~~~~~~~~~~l~~~l-~~~~~~~~~~~~~~~~~l~~~l~---~~~~~~llvlDe~~~l~~~~~~~~~~l~~l~~~ 167 (412)
T 1w5s_A 92 VNAFNAPNLYTILSLIVRQT-GYPIQVRGAPALDILKALVDNLY---VENHYLLVILDEFQSMLSSPRIAAEDLYTLLRV 167 (412)
T ss_dssp EEGGGCCSHHHHHHHHHHHH-TCCCCCTTCCHHHHHHHHHHHHH---HHTCEEEEEEESTHHHHSCTTSCHHHHHHHHTH
T ss_pred EECCCCCCHHHHHHHHHHHh-CCCCCCCCCCHHHHHHHHHHHHH---hcCCeEEEEEeCHHHHhhccCcchHHHHHHHHH
Confidence 22222111111100000000 0000 00111122 222222222 12345689999999874 3566667777
Q ss_pred hcCCC-----CcEEEEEEeCCCC---CCh---HHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcC--CCcchhHHHHHHH
Q psy13354 523 LEEPP-----KYIKFILATTEPQ---KIP---ITVLSRC-IQFNLKKMLHHDIVNNLCYILNKEN--IKFETSALNLIAT 588 (1342)
Q Consensus 523 Le~p~-----~~~vlIl~t~~~~---kl~---~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g--~~i~~~al~~La~ 588 (1342)
+++.+ ..+.+|++++.++ .+. +.+.++. ..+.|.+++.+++.+++..++...+ ..+++++++.+++
T Consensus 168 ~~~~~~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~ 247 (412)
T 1w5s_A 168 HEEIPSRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISD 247 (412)
T ss_dssp HHHSCCTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHH
T ss_pred HHhcccCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHH
Confidence 76443 5777888886554 223 4555654 4599999999999999998876543 3588999999999
Q ss_pred hcC------CcHHHHHHHHHHHHhhc----CCCCCHHHHHHHhc
Q psy13354 589 GAQ------GSMRDALSLTDQAINYS----SEKITLNSMQEMLS 622 (1342)
Q Consensus 589 ~~~------g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v~ 622 (1342)
.++ |+++.+.+++..+...+ ...++.+++..++.
T Consensus 248 ~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~ 291 (412)
T 1w5s_A 248 VYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 291 (412)
T ss_dssp HHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHH
T ss_pred HHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 999 99999999998765443 23478887776553
No 318
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.12 E-value=7.2e-10 Score=131.87 Aligned_cols=126 Identities=19% Similarity=0.275 Sum_probs=92.6
Q ss_pred eEEEeccCccCCH------------HHHHHHHHhhcCC----------CCcEEEEEEe----CCCCCChHHHhccE-EEE
Q psy13354 501 KIYVIDEVHMLTH------------HAFNAMLKTLEEP----------PKYIKFILAT----TEPQKIPITVLSRC-IQF 553 (1342)
Q Consensus 501 rvviIDE~~~L~~------------~~~~~Ll~~Le~p----------~~~~vlIl~t----~~~~kl~~~L~sR~-~~i 553 (1342)
-++++||+|++.. ..+++||+.+|.. ..+++||++. .++..+.+.+.+|+ .++
T Consensus 252 ~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i 331 (444)
T 1g41_A 252 GIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRV 331 (444)
T ss_dssp CEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEE
T ss_pred CeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceee
Confidence 3899999998842 2567999999962 4567788876 24445668999999 559
Q ss_pred EEcCCCHHHHHHHHHH-----------HHHhcCC--CcchhHHHHHHHh--------cCCcHHHHHHHHHHHHhhc----
Q psy13354 554 NLKKMLHHDIVNNLCY-----------ILNKENI--KFETSALNLIATG--------AQGSMRDALSLTDQAINYS---- 608 (1342)
Q Consensus 554 ~~~~l~~~el~~~l~~-----------~~~~~g~--~i~~~al~~La~~--------~~g~lr~a~~~L~kl~~~~---- 608 (1342)
.|++++.+++.+++.. .+..+|+ .++++++..|++. -+...|.+.+.+++++.-.
T Consensus 332 ~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~~ 411 (444)
T 1g41_A 332 ELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSA 411 (444)
T ss_dssp ECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHHG
T ss_pred eCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhhc
Confidence 9999999999999831 2222344 6899999999985 3578888888888765431
Q ss_pred -C---C--CCCHHHHHHHhccCcH
Q psy13354 609 -S---E--KITLNSMQEMLSIIDQ 626 (1342)
Q Consensus 609 -~---~--~It~e~V~~~v~~~~~ 626 (1342)
. . .||.+.|++.++....
T Consensus 412 ~~~~~~~~~i~~~~v~~~l~~~~~ 435 (444)
T 1g41_A 412 SDMNGQTVNIDAAYVADALGEVVE 435 (444)
T ss_dssp GGCTTCEEEECHHHHHHHHTTTTT
T ss_pred cccCCCeEEEeHHHHHHhcCcccc
Confidence 1 1 2899999988875443
No 319
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.07 E-value=1.1e-09 Score=133.05 Aligned_cols=255 Identities=14% Similarity=0.072 Sum_probs=151.1
Q ss_pred cccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccE
Q psy13354 391 NTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~ 470 (1342)
..++||+++++.+..++..+. .+||+||||||||++|+++++.+.... ......|..+ +-..+.... ..
T Consensus 22 ~~ivGq~~~i~~l~~al~~~~---~VLL~GpPGtGKT~LAraLa~~l~~~~-----~f~~~~~~~~-t~~dL~G~~--~~ 90 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALSGE---SVFLLGPPGIAKSLIARRLKFAFQNAR-----AFEYLMTRFS-TPEEVFGPL--SI 90 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHHTC---EEEEECCSSSSHHHHHHHGGGGBSSCC-----EEEEECCTTC-CHHHHHCCB--C-
T ss_pred hhhHHHHHHHHHHHHHHhcCC---eeEeecCchHHHHHHHHHHHHHHhhhh-----HHHHHHHhcC-CHHHhcCcc--cH
Confidence 568999999999998888773 589999999999999999999774211 0011112110 000000000 00
Q ss_pred EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC----------CCcEEEEEEeCCCC
Q psy13354 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP----------PKYIKFILATTEPQ 540 (1342)
Q Consensus 471 ~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p----------~~~~vlIl~t~~~~ 540 (1342)
.. .. . ...+..+...+. ....|++|||++.++...++.|+..+++. .+..++|++||...
T Consensus 91 ~~---~~-----~-~g~~~~~~~g~l-~~~~IL~IDEI~r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~~iI~ATN~lp 160 (500)
T 3nbx_X 91 QA---LK-----D-EGRYERLTSGYL-PEAEIVFLDEIWKAGPAILNTLLTAINERQFRNGAHVEKIPMRLLVAASNELP 160 (500)
T ss_dssp ------------------CBCCTTSG-GGCSEEEEESGGGCCHHHHHHHHHHHHSSEEECSSSEEECCCCEEEEEESSCC
T ss_pred HH---Hh-----h-chhHHhhhccCC-CcceeeeHHhHhhhcHHHHHHHHHHHHHHhccCCCCcCCcchhhhhhccccCC
Confidence 00 00 0 000000000110 12459999999999999999999999742 12224688887644
Q ss_pred C---ChHHHhccE-EEEEEcCCCH-HHHHHHHHHHH-----------------------HhcCCCcchhHHHHHHHhc--
Q psy13354 541 K---IPITVLSRC-IQFNLKKMLH-HDIVNNLCYIL-----------------------NKENIKFETSALNLIATGA-- 590 (1342)
Q Consensus 541 k---l~~~L~sR~-~~i~~~~l~~-~el~~~l~~~~-----------------------~~~g~~i~~~al~~La~~~-- 590 (1342)
. ..+++.+|+ ..+.+++|+. ++...++.... .-.++.+++++++++++..
T Consensus 161 e~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~ 240 (500)
T 3nbx_X 161 EADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQ 240 (500)
T ss_dssp CTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHH
Confidence 3 556999998 6688888887 55666665432 1236778999999998876
Q ss_pred --------CCcHHHHHHHHHHHHhhc--C--CCCCHHHHHHHhccCcHHHHHHHHHHHHccChHHHHHHHHHH-HHcCCC
Q psy13354 591 --------QGSMRDALSLTDQAINYS--S--EKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKI-EIYNLS 657 (1342)
Q Consensus 591 --------~g~lr~a~~~L~kl~~~~--~--~~It~e~V~~~v~~~~~~~if~l~dal~~~~~~~al~~l~~L-~~~~~~ 657 (1342)
+.+.|.+...+.-+.+++ . ..|+.+||. ++.......+.+. ...-.+++.+ ...+.+
T Consensus 241 lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~-~a~~vL~hr~~~~---------~~~~~~i~~~~~~~~~~ 310 (500)
T 3nbx_X 241 LDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI-LLKDCLWYDAQSL---------NLIQQQIDVLMTGHAWQ 310 (500)
T ss_dssp HHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG-GGGGTSCSSHHHH---------HHHHHHHHHHHHHTTTS
T ss_pred hhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH-HHHhhhhcCchHh---------HHHHHHHHHHHHHHHHH
Confidence 568899888776544443 2 349999998 6555444332111 0111122222 234556
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy13354 658 YSIVLKDLSLLLHQISLIQ 676 (1342)
Q Consensus 658 ~~~il~~L~~~~r~l~~~k 676 (1342)
...+...+...-.++..+.
T Consensus 311 ~~~~~~~~~~~~~~~~~~~ 329 (500)
T 3nbx_X 311 QQGMLTRLGAIVQRHLQLQ 329 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6666666555555554443
No 320
>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*
Probab=99.05 E-value=2.6e-08 Score=120.41 Aligned_cols=305 Identities=14% Similarity=0.091 Sum_probs=164.5
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC--CceEecCCHHHHHHHHHHHc--cCC
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE--AANVQPHSGSQANQAVFFSV--LNP 112 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~--~~vi~~~sGs~A~~~al~al--~~p 112 (1342)
.+-.|.+.+|+.+.+. .+.. . ..+....+ ...++.+++.++...+ +.++|++|||+|++.+++.. ...
T Consensus 79 Gh~~p~v~~Ai~~q~~-~~~~--~-~~~~~~~~----~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t~ 150 (456)
T 4atq_A 79 GASDPAVVAAVQEAAA-HFTH--T-CFMVTPYE----GYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLATG 150 (456)
T ss_dssp CTTCHHHHHHHHHHHH-HCSC--C-TTTTSCCH----HHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHh-hccC--c-ccCccCcH----HHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhhc
Confidence 3456779999888774 3321 1 11112222 2233455788887643 34566669999999999865 234
Q ss_pred CCEEEEeeccCCccchhhHHhh-----------hCCceeEEEEecCC---CC-CCCCHHHHHHHHH-------hcCCeEE
Q psy13354 113 GDTIMGMSLQEGGHLTHGMMLN-----------MSGKWFNSICYGLN---KK-EKIDYKKVEYLAK-------KNKPKLI 170 (1342)
Q Consensus 113 GD~Vlv~~~~~~~~~s~~~~~~-----------~~g~~~~~v~~~~~---~~-~~id~e~Le~~i~-------~~~~~li 170 (1342)
..+|+.....|.++........ .....+..++++.. .. ..-+.+.+++.+. ..+.+.+
T Consensus 151 r~~ii~~~~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAv 230 (456)
T 4atq_A 151 RDAVVAFDHAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAI 230 (456)
T ss_dssp CCEEEEETTCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEE
T ss_pred CCeEEEEecccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEE
Confidence 5677766555444322111110 00112233333221 11 1112333333322 2345667
Q ss_pred EEcC--C---C-CCcccCHHHHHHHHHHcCCEEEEEcccch-hhhhc---CCCCCCCCCCcEEEecCCccCCCC-CeeEE
Q psy13354 171 IAGA--S---A-YSQYIDFERFYHIAKNINSYFMVDMAHYA-GLIAA---GEYPNPVPFADFITSTTHKSLRGP-RGGFI 239 (1342)
Q Consensus 171 v~~~--s---~-~~~~~~l~~I~~la~~~gi~LIvDea~~~-g~~~~---~~~~~~l~~~Divv~S~sK~l~gp-~GG~i 239 (1342)
++-+ + . .+....+++|.++|++||+++|+||++.- |-.+. ..+.+. .+|+++.+ |.++|. +-|++
T Consensus 231 ivEPiqg~gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv--~PDivt~g--K~lggg~P~~av 306 (456)
T 4atq_A 231 IIEPIQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGV--VPDIITMA--KGIAGGLPLSAI 306 (456)
T ss_dssp EECSSBTTTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTC--CCSEEEEC--GGGGTTSSCEEE
T ss_pred EeccccCCCCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCC--CCchhhhh--hcccCcCCceee
Confidence 7643 1 1 12344699999999999999999999862 22211 111221 26998776 988442 22889
Q ss_pred EEechhHHHHhhccCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC----Cc---EEeeC-CC
Q psy13354 240 LMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR----GI---RIVSG-GT 311 (1342)
Q Consensus 240 v~~~~l~~~l~~~~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~----g~---~~~~~-~~ 311 (1342)
++++++++.+....+.+++++ +|..++++.+.++.+.+. ++.++..+..+++.+.|+++ .. +++.. ..
T Consensus 307 ~~~~~i~~~~~~~~~~~Tf~g--npla~aaala~L~~i~~~--~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG 382 (456)
T 4atq_A 307 TGRADLLDAVHPGGLGGTYGG--NPVACAAALAAIDTMEQH--DLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRG 382 (456)
T ss_dssp EEEHHHHTTSCTTSSCCSSSS--CHHHHHHHHHHHHHHHHT--THHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEE
T ss_pred EecHHHHhcccccCCCCCCCC--ChHHHHhhHHHHHHHhhc--cHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeee
Confidence 999998888876555555554 567777777777766421 24556666666777666552 11 11110 01
Q ss_pred CCeEEEEEccCCC---C----CHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccc
Q psy13354 312 KSHIILVDLRNKK---I----TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366 (1342)
Q Consensus 312 ~~~~v~i~~~~~~---~----~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~ 366 (1342)
-+.++.+.+..+. . ...+...+++ +|+++.+.... .+.+|+...-.
T Consensus 383 ~Gl~~giel~~~~~~~~~~~~~~~v~~~~~~-~Gvl~~~~g~~--------~~~irl~PpL~ 435 (456)
T 4atq_A 383 RGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVIILTCGTY--------GNVIRLLPPLV 435 (456)
T ss_dssp ETTEEEEEEBCTTSCCBCHHHHHHHHHHHHH-TTEECEEECTT--------SCEEEECCCTT
T ss_pred cceEEEEEEecCCCCCcCHHHHHHHHHHHHH-CCCEEEecCCC--------CCEEEEECCCC
Confidence 1334555553322 1 1245555555 59998754111 23578765443
No 321
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.05 E-value=2.9e-09 Score=121.70 Aligned_cols=153 Identities=11% Similarity=0.117 Sum_probs=99.0
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC----C--cCHHHH
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS----T--RGINEM 484 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~----~--~~~~~i 484 (1342)
+.+..+|||||||||||++|+++|+.++. .++.++++. . .....+
T Consensus 34 ~~p~~lLl~GppGtGKT~la~aiA~~l~~-----------------------------~~i~v~~~~l~~~~~g~~~~~i 84 (293)
T 3t15_A 34 KVPLILGIWGGKGQGKSFQCELVFRKMGI-----------------------------NPIMMSAGELESGNAGEPAKLI 84 (293)
T ss_dssp CCCSEEEEEECTTSCHHHHHHHHHHHHTC-----------------------------CCEEEEHHHHHCC---HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC-----------------------------CEEEEeHHHhhhccCchhHHHH
Confidence 55678999999999999999999999963 234443321 1 112345
Q ss_pred HHHHHHHhhcCccCCceEEEeccCccCCH-------------HHHHHHHHhhcC-------------CCCcEEEEEEeCC
Q psy13354 485 AQLLEQTIYAPINARYKIYVIDEVHMLTH-------------HAFNAMLKTLEE-------------PPKYIKFILATTE 538 (1342)
Q Consensus 485 ~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------------~~~~~Ll~~Le~-------------p~~~~vlIl~t~~ 538 (1342)
++++..+........+.||+|||+|.+.. ..++.|+..++. ...++++|++||.
T Consensus 85 ~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 85 RQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred HHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 55665553221234556999999997743 234788888863 2346889999999
Q ss_pred CCCChHHHhc--cEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH-hcCCcHH
Q psy13354 539 PQKIPITVLS--RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT-GAQGSMR 595 (1342)
Q Consensus 539 ~~kl~~~L~s--R~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~-~~~g~lr 595 (1342)
++.+++++++ |+..+-+ .|+.++..++++.++...++. .+.+..+.. .++.++.
T Consensus 165 ~~~ld~al~R~~R~d~~i~-~P~~~~r~~Il~~~~~~~~~~--~~~l~~~~~~~~~~~l~ 221 (293)
T 3t15_A 165 FSTLYAPLIRDGRMEKFYW-APTREDRIGVCTGIFRTDNVP--AEDVVKIVDNFPGQSID 221 (293)
T ss_dssp CCC--CHHHHHHHEEEEEE-CCCHHHHHHHHHHHHGGGCCC--HHHHHHHHHHSCSCCHH
T ss_pred cccCCHHHhCCCCCceeEe-CcCHHHHHHHHHHhccCCCCC--HHHHHHHhCCCCcccHH
Confidence 9999999885 6654333 469999999999888776654 444444444 4455554
No 322
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural genomics, PSI-2, prote structure initiative; HET: FAD; 2.15A {Vibrio parahaemolyticus}
Probab=98.86 E-value=1.5e-09 Score=133.71 Aligned_cols=89 Identities=17% Similarity=0.167 Sum_probs=72.3
Q ss_pred eeecCccccCCCHHHHHHHHHhcccccceE-------EecceeEEEeeeeCc--cCccccccccCcCCeeecccccC-ch
Q psy13354 1012 EYYPNGISTSLPFEAQIELVQSIDGMKNAN-------IIRPGYAIEYDYFNP--CNLKSSLETKQIHGLFFAGQING-TT 1081 (1342)
Q Consensus 1012 ~~~~~g~~~~l~~~~q~~~~~~i~gle~a~-------i~~~g~~v~~~~i~p--~~l~~tlesk~~~gL~~aGqi~g-~~ 1081 (1342)
.+.+..++..||+.+...|.+.|+.|++.. -+=+|+.++ +-.| -..+.+|||-.++|||.|||-.| +.
T Consensus 445 ~~~~~~l~~~~p~~~~~~l~e~~~~~~~~~~g~~~~~~~l~g~e~~--~ssp~ri~~~~~~~~~~~~gly~~GegaG~a~ 522 (549)
T 3nlc_A 445 GIKLTDLSKALPPFAVEAIREAIPAFDRKIKGFASEDGLLTGVETR--TSSPVCIKRGKDFQSVNLKGFYPAGEGAGYAG 522 (549)
T ss_dssp CEEECCGGGTSCHHHHHHHHHHHHHHHTTSTTTTCTTCEEEEEECC--SSCSEECCCTTTTSCTTCBTEEECHHHHTSCC
T ss_pred CcEEechhHhCcHHHHHHHHHHHHHhhccCcCCCCCCcEEEEEeec--cCCceeEEECCCceECCcCCEEEccccCChhh
Confidence 677899999999999999998877775543 111244444 5788 45778999989999999999999 68
Q ss_pred hHHHHHHHHHHHHHHHHHHhC
Q psy13354 1082 GYEEAASQGLLAGLNAALFSQ 1102 (1342)
Q Consensus 1082 gy~eA~~~G~~Ag~na~~~~~ 1102 (1342)
|...||+.|+.|+.+++.++.
T Consensus 523 gi~~Aa~~G~~~a~~i~~~~~ 543 (549)
T 3nlc_A 523 GILSAGIDGIKVAEAVARDIV 543 (549)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 999999999999998887764
No 323
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=98.83 E-value=7.2e-09 Score=105.34 Aligned_cols=133 Identities=13% Similarity=0.151 Sum_probs=88.9
Q ss_pred ccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccE
Q psy13354 392 TLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~ 470 (1342)
+++|+...++.+.+.++. ......+||+||+|||||++|+++++.....+ ..+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~--------------------------~~~ 55 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSETDIAVWLYGAPGTGRMTGARYLHQFGRNAQ--------------------------GEF 55 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTTCCSCEEEESSTTSSHHHHHHHHHHSSTTTT--------------------------SCC
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCCEEEECCCCCCHHHHHHHHHHhCCccC--------------------------CCE
Confidence 688999998888887753 22334589999999999999999998653210 123
Q ss_pred EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC-------CCh
Q psy13354 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ-------KIP 543 (1342)
Q Consensus 471 ~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~-------kl~ 543 (1342)
+ ++++...........++.+ ...+++|||++.++.+.++.|+..++..+.++.+|++||.+. .+.
T Consensus 56 v-~~~~~~~~~~~~~~~~~~a-------~~g~l~ldei~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~~~~~~~~~~~~~ 127 (145)
T 3n70_A 56 V-YRELTPDNAPQLNDFIALA-------QGGTLVLSHPEHLTREQQYHLVQLQSQEHRPFRLIGIGDTSLVELAASNHII 127 (145)
T ss_dssp E-EEECCTTTSSCHHHHHHHH-------TTSCEEEECGGGSCHHHHHHHHHHHHSSSCSSCEEEEESSCHHHHHHHSCCC
T ss_pred E-EECCCCCcchhhhcHHHHc-------CCcEEEEcChHHCCHHHHHHHHHHHhhcCCCEEEEEECCcCHHHHHHcCCCC
Confidence 3 4443322212233344433 224899999999999999999999988777888999998642 344
Q ss_pred HHHhccE--EEEEEcCC
Q psy13354 544 ITVLSRC--IQFNLKKM 558 (1342)
Q Consensus 544 ~~L~sR~--~~i~~~~l 558 (1342)
+.+..|. ..+.++|+
T Consensus 128 ~~L~~rl~~~~i~lPpL 144 (145)
T 3n70_A 128 AELYYCFAMTQIACLPL 144 (145)
T ss_dssp HHHHHHHHHHEEECCCC
T ss_pred HHHHHHhcCCEEeCCCC
Confidence 4555554 34555554
No 324
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=98.82 E-value=4e-09 Score=131.84 Aligned_cols=210 Identities=21% Similarity=0.195 Sum_probs=131.7
Q ss_pred ccccccchhhHHHHHHHHHcCCCC----------cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcch
Q psy13354 390 FNTLIGQNHISKSLINALDKKRLH----------HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVC 459 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l~~~~~~----------~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~ 459 (1342)
...++||+.++..+..++..|... ..+||+||||||||++|+.+++.+.... ..+....+|
T Consensus 294 ~~~I~G~e~vk~al~~~l~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~---------~~~~~~~~~ 364 (595)
T 3f9v_A 294 APSIYGHWELKEALALALFGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAV---------YTTGKGSTA 364 (595)
T ss_dssp SSTTSCCHHHHHHHTTTTTCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEE---------CCCTTCSTT
T ss_pred cchhcChHHHHHHHHHHHhCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCce---------ecCCCcccc
Confidence 356899999998887777766311 1589999999999999999998774210 011111112
Q ss_pred hhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-------------
Q psy13354 460 VKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP------------- 526 (1342)
Q Consensus 460 ~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p------------- 526 (1342)
..+...... +......... ...+.. ++.-+++|||++.++.+.++.|++.+|+.
T Consensus 365 ~~l~~~~~~-----~~~~g~~~~~-~G~l~~-------A~~gil~IDEid~l~~~~q~~Ll~~le~~~i~i~~~g~~~~~ 431 (595)
T 3f9v_A 365 AGLTAAVVR-----EKGTGEYYLE-AGALVL-------ADGGIAVIDEIDKMRDEDRVAIHEAMEQQTVSIAKAGIVAKL 431 (595)
T ss_dssp TTSEEECSS-----GGGTSSCSEE-ECHHHH-------HSSSEECCTTTTCCCSHHHHHHHHHHHSSSEEEESSSSEEEE
T ss_pred ccccceeee-----cccccccccc-CCeeEe-------cCCCcEEeehhhhCCHhHhhhhHHHHhCCEEEEecCCcEEEe
Confidence 111110000 0000000000 000111 13359999999999999999999999863
Q ss_pred CCcEEEEEEeCCCC-------------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhc------------------
Q psy13354 527 PKYIKFILATTEPQ-------------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKE------------------ 574 (1342)
Q Consensus 527 ~~~~vlIl~t~~~~-------------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~------------------ 574 (1342)
+..+.+|.++|... .+.+++++|+ ..+.+.++...+...++...+..+
T Consensus 432 ~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e~~~i~~~il~~~~~~~~~~~l~~~~l~~~i 511 (595)
T 3f9v_A 432 NARAAVIAAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQDRELANYILDVHSGKSTKNIIDIDTLRKYI 511 (595)
T ss_dssp CCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHHHHHHHHHHHTTTCCCSSSSTTCCTTTHHHH
T ss_pred cCceEEEEEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHHHHHHHHHHHHHhhccccccCCCHHHHHHHH
Confidence 24566788888664 6788999999 455555555544444444333322
Q ss_pred -------CCCcchhHHHHHHHh---------------cCCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 575 -------NIKFETSALNLIATG---------------AQGSMRDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 575 -------g~~i~~~al~~La~~---------------~~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
.-.+++++.+.|.+. .+++.|.+.+++.-+.+.+ ...|+.+||.+++
T Consensus 512 ~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai 584 (595)
T 3f9v_A 512 AYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAI 584 (595)
T ss_dssp HHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHH
Confidence 225778888888876 4778999888887654443 3459999999887
No 325
>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A
Probab=98.82 E-value=4.6e-07 Score=109.99 Aligned_cols=251 Identities=14% Similarity=0.125 Sum_probs=140.3
Q ss_pred CCCcHHHHHHHhHHHHhccccCCCCCCccCCcchHHHHHHHHHHHHHHHhCCC-CceEecCCHHHHHHHHHHHcc-----
Q psy13354 37 NYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVL----- 110 (1342)
Q Consensus 37 n~l~~~v~eal~~~l~~~~~~g~~~~~~~~~~~~~~~Le~~~~~~la~~~g~~-~~vi~~~sGs~A~~~al~al~----- 110 (1342)
.+-.|.+.+|+.+.+.. ... + ..+++... +...++.+++.+..+.+ +-+.|++|||+|++.+++...
T Consensus 82 Gh~~p~v~~Ai~~q~~~-l~~-~--~~~~~~~~---~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~~~ 154 (473)
T 4e3q_A 82 GFDHKGLIDAAKAQYER-FPG-Y--HAFFGRMS---DQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAA 154 (473)
T ss_dssp CSCCHHHHHHHHHHHHH-CCC-C--CCCTTEEE---HHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHh-ccc-c--cccccccC---HHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHHHh
Confidence 44567899998888753 211 1 11121111 22334566888887654 456677799999999998652
Q ss_pred --CCC-CEEEEeeccCCccchhhHHh---------hhCCceeEEEEecC----CCCCCCC-------HHHHHHHHHhc--
Q psy13354 111 --NPG-DTIMGMSLQEGGHLTHGMML---------NMSGKWFNSICYGL----NKKEKID-------YKKVEYLAKKN-- 165 (1342)
Q Consensus 111 --~pG-D~Vlv~~~~~~~~~s~~~~~---------~~~g~~~~~v~~~~----~~~~~id-------~e~Le~~i~~~-- 165 (1342)
.++ .+|+.....|.+........ ...-.++..++.|. ...+..+ .+++++.+...
T Consensus 155 ~g~~~r~~ii~~~~~yHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~ 234 (473)
T 4e3q_A 155 EGKPQKRKILTRWNAYHGVTAVSASMTGKPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGA 234 (473)
T ss_dssp TTCTTCCEEEEETTCCCCSSHHHHHHSCCGGGGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCG
T ss_pred cCCCCcceEEEeeceECCCccccccccccccccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCC
Confidence 233 35665544443322111110 00111223333331 1111111 23445555432
Q ss_pred -CCeEEEEcC-----CC-CCcccCHHHHHHHHHHcCCEEEEEcccch-hhhhc---CCCCCCCCCCcEEEecCCccCCCC
Q psy13354 166 -KPKLIIAGA-----SA-YSQYIDFERFYHIAKNINSYFMVDMAHYA-GLIAA---GEYPNPVPFADFITSTTHKSLRGP 234 (1342)
Q Consensus 166 -~~~liv~~~-----s~-~~~~~~l~~I~~la~~~gi~LIvDea~~~-g~~~~---~~~~~~l~~~Divv~S~sK~l~gp 234 (1342)
+.+.|++-+ +. .+....+++|.++|++||++||+||++.- |-.+. ..+.+. .+|+++.+ |.++|.
T Consensus 235 ~~iAavi~EPiqg~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv--~PDi~t~~--K~l~gG 310 (473)
T 4e3q_A 235 DTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDF--TPDAIISS--KNLTAG 310 (473)
T ss_dssp GGEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTC--CCSEEEEC--GGGGTT
T ss_pred CceEEEEeCCccCCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCC--CCChHHhc--ccccCC
Confidence 345566633 11 12344699999999999999999999852 22111 011111 25988765 999543
Q ss_pred --CeeEEEEechhHHHHhhc-------cCCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHhC
Q psy13354 235 --RGGFILMKKKYKKIINSA-------VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302 (1342)
Q Consensus 235 --~GG~iv~~~~l~~~l~~~-------~~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a~~l~~~L~~~ 302 (1342)
+-|++++++++++.+... .+.+++++ +|..+|++.+.++.+.+ +.+.++..+..++|.+.|+++
T Consensus 311 ~~Pl~av~~~~~i~~~~~~~~~~~~~~~hg~T~~G--npla~Aaala~L~~i~~--~~l~~~~~~~g~~l~~~L~~l 383 (473)
T 4e3q_A 311 FFPMGAVILGPELSKRLETAIEAIEEFPHGFTASG--HPVGCAIALKAIDVVMN--EGLAENVRRLAPRFEERLKHI 383 (473)
T ss_dssp SSCCEEEEECHHHHHHHHHHHHHHSCCCCCCTTTT--CHHHHHHHHHHHHHHHH--SSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcccccccHHHHHHhccccccccccccCCCCCC--Ccchhhhhhhhhhhhcc--ccHHHHHHHHHHHHHHHHHHH
Confidence 338899999988876532 23333333 67777777777776532 234566777788888888763
No 326
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.82 E-value=1.6e-08 Score=130.91 Aligned_cols=178 Identities=14% Similarity=0.200 Sum_probs=126.6
Q ss_pred ccCCCCccccccchhhHHHHHHHHHc------------CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccC
Q psy13354 384 KYRPSNFNTLIGQNHISKSLINALDK------------KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ 451 (1342)
Q Consensus 384 k~~p~~f~~lvGq~~~~~~L~~~l~~------------~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~ 451 (1342)
...+..|++++|++.+++.|.+.+.. -..+..+||+||+|||||+++++++..+..
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~------------ 264 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGA------------ 264 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTC------------
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCC------------
Confidence 45678999999999999999888863 245567999999999999999999987752
Q ss_pred CCCCCcchhhhccCCCccEEEEccCCC----c--CHHHHHHHHHHHhhcCccCCceEEEeccCccCC-----------HH
Q psy13354 452 PCGKCSVCVKIDNGCFMDYIEMDAAST----R--GINEMAQLLEQTIYAPINARYKIYVIDEVHMLT-----------HH 514 (1342)
Q Consensus 452 ~c~~~~~~~~~~~~~~~d~~~i~~~~~----~--~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~-----------~~ 514 (1342)
.++.+++... . ....++.+++.+.. ..+.++++||++.+. ..
T Consensus 265 -----------------~~i~v~~~~l~~~~~g~~~~~l~~vf~~a~~----~~p~il~iDEid~l~~~~~~~~~~~~~~ 323 (806)
T 1ypw_A 265 -----------------FFFLINGPEIMSKLAGESESNLRKAFEEAEK----NAPAIIFIDELDAIAPKREKTHGEVERR 323 (806)
T ss_dssp -----------------EEEEEEHHHHSSSSTTHHHHHHHHHHHHHHH----HCSEEEEEESGGGTSCTTSCCCSHHHHH
T ss_pred -----------------cEEEEEchHhhhhhhhhHHHHHHHHHHHHHh----cCCcEEEeccHHHhhhccccccchHHHH
Confidence 3445543211 1 12235555555433 234699999998763 22
Q ss_pred HHHHHHHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHh
Q psy13354 515 AFNAMLKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589 (1342)
Q Consensus 515 ~~~~Ll~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~ 589 (1342)
..+.|+..++.. ...+++|+++|.++.+.+.+.+ |+ ..+.+..|+.++..+++...+.+..+. ++..+..++..
T Consensus 324 ~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~ 402 (806)
T 1ypw_A 324 IVSQLLTLMDGLKQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANE 402 (806)
T ss_dssp HHHHHHHHHHSSCTTSCCEEEEECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHS
T ss_pred HHHHHHHHhhhhcccccEEEecccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHh
Confidence 456777777743 3467888899999888888887 77 778999999999999998776654432 33345666776
Q ss_pred cCCcHH
Q psy13354 590 AQGSMR 595 (1342)
Q Consensus 590 ~~g~lr 595 (1342)
+.|...
T Consensus 403 t~g~~g 408 (806)
T 1ypw_A 403 THGHVG 408 (806)
T ss_dssp CSSCCH
T ss_pred hcCcch
Confidence 665443
No 327
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.73 E-value=8.7e-08 Score=111.98 Aligned_cols=201 Identities=12% Similarity=0.084 Sum_probs=121.9
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc------c----
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS------V---- 458 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~------~---- 458 (1342)
.-..++|++..++.|.+++..+ +.++++||+|+|||++++.+++.+.. .+..|..+. .
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~~---~~v~i~G~~G~GKT~Ll~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLENY---PLTLLLGIRRVGKSSLLRAFLNERPG---------ILIDCRELYAERGHITREEL 77 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHHC---SEEEEECCTTSSHHHHHHHHHHHSSE---------EEEEHHHHHHTTTCBCHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhcC---CeEEEECCCcCCHHHHHHHHHHHcCc---------EEEEeecccccccCCCHHHH
Confidence 3466899999999999999876 57999999999999999999987520 111111110 0
Q ss_pred hhhhccCCCc--------cE-EEEcc-CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH-------HHHHHHHH
Q psy13354 459 CVKIDNGCFM--------DY-IEMDA-ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH-------HAFNAMLK 521 (1342)
Q Consensus 459 ~~~~~~~~~~--------d~-~~i~~-~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~-------~~~~~Ll~ 521 (1342)
+..+...... .+ ..+.. ........+.++++.+....-..++.+|+|||+|.+.. +....|..
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~~~~~~~~~~L~~ 157 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGSRGGKELLALFAY 157 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCccchhhHHHHHHH
Confidence 0000000000 00 00000 00000112333333322211111256899999998753 34444544
Q ss_pred hhcCCCCcEEEEEEeCCCC---------CChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcC
Q psy13354 522 TLEEPPKYIKFILATTEPQ---------KIPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQ 591 (1342)
Q Consensus 522 ~Le~p~~~~vlIl~t~~~~---------kl~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~ 591 (1342)
.++.. +++.+|+++.... .....+..|. ..+.+.|++.++..+++...+...|..++++.+..+++.++
T Consensus 158 ~~~~~-~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~tg 236 (350)
T 2qen_A 158 AYDSL-PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVELLD 236 (350)
T ss_dssp HHHHC-TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHT
T ss_pred HHHhc-CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhC
Confidence 44543 4677777765421 1111234454 68999999999999999998888888899999999999999
Q ss_pred CcHHHHHHHHH
Q psy13354 592 GSMRDALSLTD 602 (1342)
Q Consensus 592 g~lr~a~~~L~ 602 (1342)
|++..+.....
T Consensus 237 G~P~~l~~~~~ 247 (350)
T 2qen_A 237 GIPGWLVVFGV 247 (350)
T ss_dssp TCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 99987655443
No 328
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.70 E-value=5.6e-07 Score=105.92 Aligned_cols=190 Identities=18% Similarity=0.263 Sum_probs=129.2
Q ss_pred cccccchhhHHHHHHHHH---cCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCC
Q psy13354 391 NTLIGQNHISKSLINALD---KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467 (1342)
Q Consensus 391 ~~lvGq~~~~~~L~~~l~---~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 467 (1342)
.+++|+...+..+...+. .... .++++|++|+||+.+|+.+.+.....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~a~~~~--~vli~GesGtGKe~lAr~ih~~s~r~--------------------------- 179 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKIAKSKA--PVLITGESGTGKEIVARLIHRYSGRK--------------------------- 179 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHHHTSCS--CEEEECCTTSSHHHHHHHHHHHHCCC---------------------------
T ss_pred ccccccchHHHHHHhhhhhhhccch--hheEEeCCCchHHHHHHHHHHhcccc---------------------------
Confidence 468888777766655542 3333 38999999999999999998876421
Q ss_pred ccEEEEccCCCcCHHHHHHHHHHHhhcCc------------cCCceEEEeccCccCCHHHHHHHHHhhcCC---------
Q psy13354 468 MDYIEMDAASTRGINEMAQLLEQTIYAPI------------NARYKIYVIDEVHMLTHHAFNAMLKTLEEP--------- 526 (1342)
Q Consensus 468 ~d~~~i~~~~~~~~~~i~~ii~~~~~~p~------------~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p--------- 526 (1342)
..|+.+|++.......-.+++.. ...+| .++.-.+++||++.|+.+.+..|+++|++.
T Consensus 180 ~~fv~vnc~~~~~~~~~~~lfg~-~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~Q~~Ll~~l~~~~~~~~g~~~ 258 (368)
T 3dzd_A 180 GAFVDLNCASIPQELAESELFGH-EKGAFTGALTRKKGKLELADQGTLFLDEVGELDQRVQAKLLRVLETGSFTRLGGNQ 258 (368)
T ss_dssp SCEEEEESSSSCTTTHHHHHHEE-CSCSSSSCCCCEECHHHHTTTSEEEEETGGGSCHHHHHHHHHHHHHSEECCBTCCC
T ss_pred CCcEEEEcccCChHHHHHHhcCc-cccccCCcccccCChHhhcCCCeEEecChhhCCHHHHHHHHHHHHhCCcccCCCCc
Confidence 11666666543221111112110 00000 012348999999999999999999999853
Q ss_pred --CCcEEEEEEeCCCC-------CChHHHhccE--EEEEEcCCCH--HHHHHHHHHHHH----hcC---CCcchhHHHHH
Q psy13354 527 --PKYIKFILATTEPQ-------KIPITVLSRC--IQFNLKKMLH--HDIVNNLCYILN----KEN---IKFETSALNLI 586 (1342)
Q Consensus 527 --~~~~vlIl~t~~~~-------kl~~~L~sR~--~~i~~~~l~~--~el~~~l~~~~~----~~g---~~i~~~al~~L 586 (1342)
+.++.+|.+|+..- .+.+.|..|+ ..+.++|+.+ +++...+...++ +.+ ..+++++++.|
T Consensus 259 ~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L 338 (368)
T 3dzd_A 259 KIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYL 338 (368)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHH
T ss_pred ceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHH
Confidence 13567888888642 4445677776 5678888876 677665555443 334 35999999999
Q ss_pred HHhc-CCcHHHHHHHHHHHHhhcCC
Q psy13354 587 ATGA-QGSMRDALSLTDQAINYSSE 610 (1342)
Q Consensus 587 a~~~-~g~lr~a~~~L~kl~~~~~~ 610 (1342)
..+. .||+|.+.+.++.++..+.+
T Consensus 339 ~~~~wpGNvreL~n~i~~~~~~~~~ 363 (368)
T 3dzd_A 339 MKQEWKGNVRELKNLIERAVILCEG 363 (368)
T ss_dssp HTCCCTTHHHHHHHHHHHHHHTCCS
T ss_pred HhCCCCcHHHHHHHHHHHHHHhCCC
Confidence 9987 99999999999998877654
No 329
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=98.68 E-value=5.8e-10 Score=144.35 Aligned_cols=194 Identities=18% Similarity=0.208 Sum_probs=125.9
Q ss_pred CCCCccccccchhhHHHHHHHHHcC------------CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC
Q psy13354 386 RPSNFNTLIGQNHISKSLINALDKK------------RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC 453 (1342)
Q Consensus 386 ~p~~f~~lvGq~~~~~~L~~~l~~~------------~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c 453 (1342)
....|+++.|++.+++.|.+.+... ..+..+||+||||||||++|+++++.+.+.... ..|
T Consensus 472 ~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~-------v~~ 544 (806)
T 1ypw_A 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFIS-------IKG 544 (806)
T ss_dssp CCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCC-------CCC
T ss_pred ccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEE-------Eec
Confidence 4557999999999999999887531 234568999999999999999999998642110 001
Q ss_pred CCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCC--------------HHHHHHH
Q psy13354 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT--------------HHAFNAM 519 (1342)
Q Consensus 454 ~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~--------------~~~~~~L 519 (1342)
. .+... + .......++.+++.+.... +.++++||+|.+. ....+.|
T Consensus 545 ~------~l~~~----~------~g~~~~~i~~~f~~a~~~~----p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~L 604 (806)
T 1ypw_A 545 P------ELLTM----W------FGESEANVREIFDKARQAA----PCVLFFDELDSIAKARGGNIGDGGGAADRVINQI 604 (806)
T ss_dssp S------SSTTC----C------TTTSSHHHHHHHHHHHHHC----SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHH
T ss_pred h------Hhhhh----h------cCccHHHHHHHHHHHHhcC----CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHH
Confidence 0 00000 0 0112245667776665432 3599999999762 1235677
Q ss_pred HHhhcCC--CCcEEEEEEeCCCCCChHHHhc--cE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCC-c
Q psy13354 520 LKTLEEP--PKYIKFILATTEPQKIPITVLS--RC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQG-S 593 (1342)
Q Consensus 520 l~~Le~p--~~~~vlIl~t~~~~kl~~~L~s--R~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g-~ 593 (1342)
+..++.. ...+++|++||.++.+++++++ |+ ..+.|+.|+.++..++++.++++..+. .+..++.|++.+.| +
T Consensus 605 L~~ld~~~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~s 683 (806)
T 1ypw_A 605 LTEMDGMSTKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFS 683 (806)
T ss_dssp HTTCC------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSC
T ss_pred HHHHhcccccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccC
Confidence 7777743 3467788889999999999998 88 689999999999999998877654432 22234455555543 4
Q ss_pred HHHHHHHHHHHHhh
Q psy13354 594 MRDALSLTDQAINY 607 (1342)
Q Consensus 594 lr~a~~~L~kl~~~ 607 (1342)
-+++.+++..+...
T Consensus 684 gadi~~l~~~a~~~ 697 (806)
T 1ypw_A 684 GADLTEICQRACKL 697 (806)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 44555555554443
No 330
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Probab=98.64 E-value=1.4e-07 Score=122.23 Aligned_cols=167 Identities=11% Similarity=0.008 Sum_probs=92.8
Q ss_pred CHHHHHHHHHHcCCEEEEEcccc-hhhhhcCCCCC--CCC-CCcEEEecCCccCCCC--CeeEEEEechhHHHHhhcc--
Q psy13354 182 DFERFYHIAKNINSYFMVDMAHY-AGLIAAGEYPN--PVP-FADFITSTTHKSLRGP--RGGFILMKKKYKKIINSAV-- 253 (1342)
Q Consensus 182 ~l~~I~~la~~~gi~LIvDea~~-~g~~~~~~~~~--~l~-~~Divv~S~sK~l~gp--~GG~iv~~~~l~~~l~~~~-- 253 (1342)
.+++|.++|++||++||+||++. +|..+ .... .+. .+|+++ ++|.++|. +-|++++++++++.+....
T Consensus 617 ~L~~l~~lc~~~gilLI~DEV~tGfGRtG--~~fa~e~~gv~PDiit--lsK~L~gG~~Plgav~~~~~i~~~~~~~~~~ 692 (831)
T 4a0g_A 617 FQRVLVNECRNRKIPVIFDEVFTGFWRLG--VETTTELLGCKPDIAC--FAKLLTGGMVPLAVTLATDAVFDSFSGDSKL 692 (831)
T ss_dssp HHHHHHHHHHHTTCCEEEECTTTTTTTTS--BSSTHHHHSSCCSEEE--ECGGGGTTSSCCEEEEECHHHHHTTCSSCGG
T ss_pred HHHHHHHHHHHcCCeEEEEcCccccccCC--CchhhHhcCCCCcEEE--EecccccCccCcEEEEECHHHHHHHhccccc
Confidence 49999999999999999999975 32222 1111 011 258774 66999552 2299999999988876532
Q ss_pred --CCccccCCcHHHHHHHHHHHHHhccchHHHHHHHHHHHH--------HHHHHHHHhCC-cEEeeCCCCCeEEEEEccC
Q psy13354 254 --FPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNA--------KILSKILDQRG-IRIVSGGTKSHIILVDLRN 322 (1342)
Q Consensus 254 --~~~~~~~~~~~~~~Aaa~al~~~l~~~~~~~~~~l~~~a--------~~l~~~L~~~g-~~~~~~~~~~~~v~i~~~~ 322 (1342)
..+.++...+|..+|++.+.++.+.+. ...+++.++. +.+.+.+.+.+ +..+. ..+.++.+.+..
T Consensus 693 ~~~~hg~T~~g~Pla~Aaala~L~~i~~~--~l~~~~~~~~~~l~~~l~~~l~~~l~~~~~v~~vr--g~Gl~~~iel~~ 768 (831)
T 4a0g_A 693 KALLHGHSYSAHAMGCATAAKAIQWFKDP--ETNHNITSQGKTLRELWDEELVQQISSHSAVQRVV--VIGTLFALELKA 768 (831)
T ss_dssp GSCCCCCTTTTCHHHHHHHHHHHHHHHCT--TTCTTBCTTSSBBCCCSCHHHHHHHHHSTTEEEEE--EETTEEEEEEC-
T ss_pred ccceeecCCcccHHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHHHHHHHhhCCCceeEe--ecccEEEEEEec
Confidence 112223333567777777766664311 1112221111 12334454443 22222 223455555532
Q ss_pred CC--------CCHHHHHHHHHHCCceeeeccCCCCCCCcccccccccccccccc
Q psy13354 323 KK--------ITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368 (1342)
Q Consensus 323 ~~--------~~~~~~~~ll~~~GI~v~~~~~p~~~~~~~~~~~lRi~~~~~~t 368 (1342)
.. ....+...+++ +||++.+. .+.+|++.+..++
T Consensus 769 ~~~~~~~~~~~a~~~~~~l~e-~Gv~v~p~-----------g~~lrl~pp~~~t 810 (831)
T 4a0g_A 769 DASNSGYASLYAKSLLIMLRE-DGIFTRPL-----------GNVIYLMCGPCTS 810 (831)
T ss_dssp --------CHHHHHHHHHHHH-TTEECCCB-----------TTEEEEECCTTCC
T ss_pred CccccccchHHHHHHHHHHHH-CCcEEEec-----------CCEEEEECCCCCC
Confidence 21 12245555554 69999753 2469998777655
No 331
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=98.61 E-value=2.3e-08 Score=101.27 Aligned_cols=129 Identities=8% Similarity=0.113 Sum_probs=84.2
Q ss_pred ccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccE
Q psy13354 392 TLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470 (1342)
Q Consensus 392 ~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~ 470 (1342)
+++|+...++.+.+.+.. ......+||+||+|||||++|+.+++... .+
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~~~~~vll~G~~GtGKt~lA~~i~~~~~------------------------------~~ 54 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAKRTSPVFLTGEAGSPFETVARYFHKNGT------------------------------PW 54 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHTCSSCEEEEEETTCCHHHHHGGGCCTTS------------------------------CE
T ss_pred CceeCCHHHHHHHHHHHHHhCCCCcEEEECCCCccHHHHHHHHHHhCC------------------------------Ce
Confidence 578999888888877753 12234489999999999999999886542 13
Q ss_pred EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCC-CCcEEEEEEeCCCC-C----ChH
Q psy13354 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP-PKYIKFILATTEPQ-K----IPI 544 (1342)
Q Consensus 471 ~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p-~~~~vlIl~t~~~~-k----l~~ 544 (1342)
+.++++.... +....+++.+ +..+++|||++.++.+.++.|++++++. +.++.+|+++|... . +.+
T Consensus 55 ~~~~~~~~~~-~~~~~~~~~a-------~~~~l~lDei~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn~~~~~~~~~~~~ 126 (143)
T 3co5_A 55 VSPARVEYLI-DMPMELLQKA-------EGGVLYVGDIAQYSRNIQTGITFIIGKAERCRVRVIASCSYAAGSDGISCEE 126 (143)
T ss_dssp ECCSSTTHHH-HCHHHHHHHT-------TTSEEEEEECTTCCHHHHHHHHHHHHHHTTTTCEEEEEEEECTTTC--CHHH
T ss_pred EEechhhCCh-HhhhhHHHhC-------CCCeEEEeChHHCCHHHHHHHHHHHHhCCCCCEEEEEecCCCHHHHHhCccH
Confidence 3344432110 0123333332 2358999999999999999999999864 35677888887542 2 345
Q ss_pred HHhccE--EEEEEcCC
Q psy13354 545 TVLSRC--IQFNLKKM 558 (1342)
Q Consensus 545 ~L~sR~--~~i~~~~l 558 (1342)
.+..|. ..+.++|+
T Consensus 127 ~L~~rl~~~~i~lPpL 142 (143)
T 3co5_A 127 KLAGLFSESVVRIPPL 142 (143)
T ss_dssp HHHHHSSSEEEEECCC
T ss_pred HHHHHhcCcEEeCCCC
Confidence 666664 56666665
No 332
>1jql_B DNA polymerase III, delta subunit; processivity clamp, clamp loader, DNA replication, AAA+ ATPase, transferase; HET: DNA; 2.50A {Escherichia coli} SCOP: c.37.1.20
Probab=98.58 E-value=1.4e-07 Score=95.12 Aligned_cols=125 Identities=12% Similarity=0.072 Sum_probs=94.5
Q ss_pred HHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCH
Q psy13354 402 SLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI 481 (1342)
Q Consensus 402 ~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~ 481 (1342)
.+.+.++++ +.++|||||++-......+..+.+.+..++ +.+.+.....+.
T Consensus 8 ~l~~~l~~~-~~pvyll~G~E~~l~~~~~~~i~~~~~~~~----------------------------~~e~~~~~~~~~ 58 (140)
T 1jql_B 8 QLRAQLNEG-LRAAYLLLGNDPLLLQESQDAVRQVAAAQG----------------------------FEEHHTFSIDPN 58 (140)
T ss_dssp GHHHHHHHC-CCSEEEEESSCHHHHHHHHHHHHHHHHHTT----------------------------CCEEECCCCSTT
T ss_pred HHHHHHhcc-CCceEEEEcCcHHHHHHHHHHHHHHHHHCC----------------------------CcceeEEEecCC
Confidence 344555544 889999999999999999999988775321 111121111222
Q ss_pred HHHHHHHHHHhhcCccCCceEEEeccCcc-CCHHHHHHHHHhhcCCCCcEEEEEEeCCCC------CChHHHhccEEEEE
Q psy13354 482 NEMAQLLEQTIYAPINARYKIYVIDEVHM-LTHHAFNAMLKTLEEPPKYIKFILATTEPQ------KIPITVLSRCIQFN 554 (1342)
Q Consensus 482 ~~i~~ii~~~~~~p~~~~~rvviIDE~~~-L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~------kl~~~L~sR~~~i~ 554 (1342)
.++.++++++.+.|+|+++|+|+|.+++. ++++..+.|.+|+++|++++++|++..+.+ |+.+++.+.+.+++
T Consensus 59 ~~~~~l~~~~~s~slF~~rrlV~v~~~~~~~~~~~~~~L~~yl~~p~~~~~lvi~~~kld~~~~~~k~~k~l~k~g~~v~ 138 (140)
T 1jql_B 59 TDWNAIFSLCQAMSLFASRQTLLLLLPENGPNAAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRSVQVT 138 (140)
T ss_dssp CCHHHHHHHHHCCCTTCCCEEEEEECCTTCSCTTHHHHHHHHHHHCCSSCCEEEECSSCCTTGGGSHHHHHHGGGCEEEE
T ss_pred CCHHHHHHHHhcCCCCCCCEEEEEECCCCCCChHHHHHHHHHHhcCCCCEEEEEEeCCcChhHHhhHHHHHHHhCeEEEE
Confidence 57899999999999999999999999764 677778899999999999999999986544 45668877777776
Q ss_pred E
Q psy13354 555 L 555 (1342)
Q Consensus 555 ~ 555 (1342)
|
T Consensus 139 ~ 139 (140)
T 1jql_B 139 C 139 (140)
T ss_dssp C
T ss_pred e
Confidence 5
No 333
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.54 E-value=9.6e-07 Score=104.76 Aligned_cols=202 Identities=19% Similarity=0.252 Sum_probs=133.3
Q ss_pred ccccccchhhHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCc
Q psy13354 390 FNTLIGQNHISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFM 468 (1342)
Q Consensus 390 f~~lvGq~~~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~ 468 (1342)
|..++|+...++.+.+.+.. ......++++|++|+||+++|+.+....... ..
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~--------------------------~~ 189 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKKISCAECPVLITGESGVGKEVVARLIHKLSDRS--------------------------KE 189 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHHHTTCCSCEEEECSTTSSHHHHHHHHHHHSTTT--------------------------TS
T ss_pred chhhhhccHHhhHHHHHHHHhcCCCCCeEEecCCCcCHHHHHHHHHHhcCCC--------------------------CC
Confidence 56788877776666655532 1112337999999999999999998865421 12
Q ss_pred cEEEEccCCCcCHHHHH-HHHHHHhhcCc------------cCCceEEEeccCccCCHHHHHHHHHhhcCC---------
Q psy13354 469 DYIEMDAASTRGINEMA-QLLEQTIYAPI------------NARYKIYVIDEVHMLTHHAFNAMLKTLEEP--------- 526 (1342)
Q Consensus 469 d~~~i~~~~~~~~~~i~-~ii~~~~~~p~------------~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p--------- 526 (1342)
.|+.+|++.... +.+. +++.. ....+ .++.-.+++||++.++.+.+..|+++|++.
T Consensus 190 ~fv~v~~~~~~~-~~~~~elfg~-~~g~~tga~~~~~g~~~~a~~gtlfldei~~l~~~~q~~Ll~~l~~~~~~~~g~~~ 267 (387)
T 1ny5_A 190 PFVALNVASIPR-DIFEAELFGY-EKGAFTGAVSSKEGFFELADGGTLFLDEIGELSLEAQAKLLRVIESGKFYRLGGRK 267 (387)
T ss_dssp CEEEEETTTSCH-HHHHHHHHCB-CTTSSTTCCSCBCCHHHHTTTSEEEEESGGGCCHHHHHHHHHHHHHSEECCBTCCS
T ss_pred CeEEEecCCCCH-HHHHHHhcCC-CCCCCCCcccccCCceeeCCCcEEEEcChhhCCHHHHHHHHHHHhcCcEEeCCCCc
Confidence 356666653221 1111 11110 00000 012349999999999999999999999852
Q ss_pred --CCcEEEEEEeCCC-------CCChHHHhccE--EEEEEcCCCH--HHHHHHHHHHH----HhcCC---CcchhHHHHH
Q psy13354 527 --PKYIKFILATTEP-------QKIPITVLSRC--IQFNLKKMLH--HDIVNNLCYIL----NKENI---KFETSALNLI 586 (1342)
Q Consensus 527 --~~~~vlIl~t~~~-------~kl~~~L~sR~--~~i~~~~l~~--~el~~~l~~~~----~~~g~---~i~~~al~~L 586 (1342)
+.++.+|.+||.. ..+.+.+..|. ..+.++|+.+ +++...+...+ ++.+. .+++++++.|
T Consensus 268 ~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l 347 (387)
T 1ny5_A 268 EIEVNVRILAATNRNIKELVKEGKFREDLYYRLGVIEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELL 347 (387)
T ss_dssp BEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTTEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHH
T ss_pred eeeccEEEEEeCCCCHHHHHHcCCccHHHHHhhcCCeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHH
Confidence 2367788888863 23445555555 5677888864 66655544443 34443 4899999999
Q ss_pred HHhc-CCcHHHHHHHHHHHHhhcCC-CCCHHHHHH
Q psy13354 587 ATGA-QGSMRDALSLTDQAINYSSE-KITLNSMQE 619 (1342)
Q Consensus 587 a~~~-~g~lr~a~~~L~kl~~~~~~-~It~e~V~~ 619 (1342)
..+. .||+|.+.+.++.++..+.+ .|+.+++..
T Consensus 348 ~~~~wpGNvreL~~~i~~~~~~~~~~~i~~~~l~~ 382 (387)
T 1ny5_A 348 LSYPWYGNVRELKNVIERAVLFSEGKFIDRGELSC 382 (387)
T ss_dssp HHSCCTTHHHHHHHHHHHHHHHCCSSEECHHHHHH
T ss_pred HhCCCCcHHHHHHHHHHHHHHhCCCCcCcHHHCcH
Confidence 9875 99999999999998887754 488887754
No 334
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.52 E-value=9.6e-07 Score=103.28 Aligned_cols=197 Identities=20% Similarity=0.156 Sum_probs=118.6
Q ss_pred CccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC-----cchhh--
Q psy13354 389 NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC-----SVCVK-- 461 (1342)
Q Consensus 389 ~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~-----~~~~~-- 461 (1342)
.-..++|.+..++.|.+ +.. +.++++||+|+|||++++.+++.+... ..+..|..+ .+...
T Consensus 11 ~~~~~~gR~~el~~L~~-l~~----~~v~i~G~~G~GKT~L~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LRA----PITLVLGLRRTGKSSIIKIGINELNLP-------YIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TCS----SEEEEEESTTSSHHHHHHHHHHHHTCC-------EEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hcC----CcEEEECCCCCCHHHHHHHHHHhcCCC-------EEEEEchhhccccCCCHHHHH
Confidence 44678999999999998 765 479999999999999999999987421 111111110 00000
Q ss_pred ------h-------------ccCC-CccE----EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCH----
Q psy13354 462 ------I-------------DNGC-FMDY----IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH---- 513 (1342)
Q Consensus 462 ------~-------------~~~~-~~d~----~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~---- 513 (1342)
+ .... .... ..++... .....+.++++.+..... ++-+|+|||+|.+..
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~--~~~vlvlDe~~~~~~~~~~ 155 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNR-KDRLSFANLLESFEQASK--DNVIIVLDEAQELVKLRGV 155 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC------CCCHHHHHHHHHHTCS--SCEEEEEETGGGGGGCTTC
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCC-cchhhHHHHHHHHHhcCC--CCeEEEEECHHHhhccCch
Confidence 0 0000 0000 0111000 001234455555443321 356899999998743
Q ss_pred HHHHHHHHhhcCCCCcEEEEEEeCCCCC---------ChHHHhccE-EEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHH
Q psy13354 514 HAFNAMLKTLEEPPKYIKFILATTEPQK---------IPITVLSRC-IQFNLKKMLHHDIVNNLCYILNKENIKFETSAL 583 (1342)
Q Consensus 514 ~~~~~Ll~~Le~p~~~~vlIl~t~~~~k---------l~~~L~sR~-~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al 583 (1342)
+....|....+.. +.+.+|+++..... ....+..|. ..+.+.+++.++..+++...+...+...++.
T Consensus 156 ~~~~~l~~~~~~~-~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~-- 232 (357)
T 2fna_A 156 NLLPALAYAYDNL-KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQEADIDFKDY-- 232 (357)
T ss_dssp CCHHHHHHHHHHC-TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHHHTCCCCCH--
T ss_pred hHHHHHHHHHHcC-CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHHcCCCCCcH--
Confidence 2333444444433 35777777764321 111344564 7899999999999999998887777766554
Q ss_pred HHHHHhcCCcHHHHHHHHHH
Q psy13354 584 NLIATGAQGSMRDALSLTDQ 603 (1342)
Q Consensus 584 ~~La~~~~g~lr~a~~~L~k 603 (1342)
..+++.++|++..+......
T Consensus 233 ~~i~~~t~G~P~~l~~~~~~ 252 (357)
T 2fna_A 233 EVVYEKIGGIPGWLTYFGFI 252 (357)
T ss_dssp HHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHH
Confidence 88999999999987655443
No 335
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=98.47 E-value=5.1e-07 Score=95.03 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=46.7
Q ss_pred hhccCCCCcccccc----chhhHHHHHHHHHcCCC--CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 382 ARKYRPSNFNTLIG----QNHISKSLINALDKKRL--HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 382 ~~k~~p~~f~~lvG----q~~~~~~L~~~l~~~~~--~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+++|++.+|+++++ |+.+++.+.+.+.+-.. +..++|+||+|+|||++++.++..+.
T Consensus 1 ~~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 1 AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CCSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred CchhhhCccccccCCCHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999986 66777777777765432 35799999999999999999999885
No 336
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.44 E-value=8.3e-07 Score=98.12 Aligned_cols=137 Identities=14% Similarity=0.154 Sum_probs=92.0
Q ss_pred hHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCC
Q psy13354 399 ISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477 (1342)
Q Consensus 399 ~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~ 477 (1342)
....+...++.. ...++++||||||||||.++.++++.+... -.++.+.
T Consensus 89 ~~~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l~------------------------------G~vn~~~ 138 (267)
T 1u0j_A 89 AASVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPFY------------------------------GCVNWTN 138 (267)
T ss_dssp HHHHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSCE------------------------------EECCTTC
T ss_pred HHHHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhccc------------------------------ceeeccc
Confidence 345566666665 335689999999999999999999975311 0111111
Q ss_pred CcCHHHHHHHHHHHhhcCcc--CCceEEEeccCccCCHHHHHHHHHhhc--------CCC-----CcEEEEEEeCCC---
Q psy13354 478 TRGINEMAQLLEQTIYAPIN--ARYKIYVIDEVHMLTHHAFNAMLKTLE--------EPP-----KYIKFILATTEP--- 539 (1342)
Q Consensus 478 ~~~~~~i~~ii~~~~~~p~~--~~~rvviIDE~~~L~~~~~~~Ll~~Le--------~p~-----~~~vlIl~t~~~--- 539 (1342)
...++. .+++|++.||+.... +.++.+.++++ ... ..+.+|++||..
T Consensus 139 --------------~~f~l~~~~~k~i~l~Ee~~~~~-d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~ 203 (267)
T 1u0j_A 139 --------------ENFPFNDCVDKMVIWWEEGKMTA-KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCA 203 (267)
T ss_dssp --------------SSCTTGGGSSCSEEEECSCCEET-TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTC
T ss_pred --------------cccccccccccEEEEeccccchh-HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCccc
Confidence 011221 355677777777664 45566777776 211 345678888862
Q ss_pred --------CCChHHHhccEEEEEEc--------CCCHHHHHHHHHHHHHhcCCCcchh
Q psy13354 540 --------QKIPITVLSRCIQFNLK--------KMLHHDIVNNLCYILNKENIKFETS 581 (1342)
Q Consensus 540 --------~kl~~~L~sR~~~i~~~--------~l~~~el~~~l~~~~~~~g~~i~~~ 581 (1342)
+...+.|.||+.+++|. +++.++...++. +++.++.+++++
T Consensus 204 ~~~g~~~s~~~~~~L~sR~~~f~F~~~~p~~~~~lt~~~~~~f~~-w~~~~~~~~~~~ 260 (267)
T 1u0j_A 204 VIDGNSTTFEHQQPLQDRMFKFELTRRLDHDFGKVTKQEVKDFFR-WAKDHVVEVEHE 260 (267)
T ss_dssp EEETTEEECTTHHHHHTTEEEEECCSCCCTTSCCCCHHHHHHHHH-HHHHTCCCCCCC
T ss_pred ccccCccchhhhHHHhhhEEEEECCCcCCcccCCCCHHHHHHHHH-HHHHcCCCCccc
Confidence 25667999999999999 899999999997 667777766543
No 337
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.22 E-value=4.9e-06 Score=87.72 Aligned_cols=118 Identities=16% Similarity=0.170 Sum_probs=72.0
Q ss_pred HHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCc
Q psy13354 400 SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTR 479 (1342)
Q Consensus 400 ~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~ 479 (1342)
+..|+..++.-...++++||||||+|||++|.++++.+... +..+..+...
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~-----------------------------i~~fans~s~ 95 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA-----------------------------VISFVNSTSH 95 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE-----------------------------ECCCCCSSSC
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC-----------------------------eeeEEeccch
Confidence 46666666542123679999999999999999999998521 1111000000
Q ss_pred CHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHH-HHHHHHhhcCCC-------------CcEEEEEEeCC---CCCC
Q psy13354 480 GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA-FNAMLKTLEEPP-------------KYIKFILATTE---PQKI 542 (1342)
Q Consensus 480 ~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~-~~~Ll~~Le~p~-------------~~~vlIl~t~~---~~kl 542 (1342)
....+ ..+.+++++||++.-..+. ...+..+++..+ ....+|++||. .+..
T Consensus 96 -----------f~l~~-l~~~kIiiLDEad~~~~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~ 163 (212)
T 1tue_A 96 -----------FWLEP-LTDTKVAMLDDATTTCWTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNR 163 (212)
T ss_dssp -----------GGGGG-GTTCSSEEEEEECHHHHHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSS
T ss_pred -----------hhhcc-cCCCCEEEEECCCchhHHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccc
Confidence 00112 2346799999998432222 234555555432 12347888886 3455
Q ss_pred hHHHhccEEEEEEcCC
Q psy13354 543 PITVLSRCIQFNLKKM 558 (1342)
Q Consensus 543 ~~~L~sR~~~i~~~~l 558 (1342)
.+.|.||+..+.|+.+
T Consensus 164 ~~~L~SRi~~f~F~~~ 179 (212)
T 1tue_A 164 WPYLESRITVFEFPNA 179 (212)
T ss_dssp CHHHHTSCEEEECCSC
T ss_pred hhhhhhhEEEEEcCCC
Confidence 6799999999999843
No 338
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=98.16 E-value=1.5e-05 Score=94.09 Aligned_cols=202 Identities=13% Similarity=0.041 Sum_probs=123.3
Q ss_pred cccchhhHHHHHHHHHcCC----CCcEEEEEccCcccHHHHHHHH-HHHhccCCCCCCCCcccCCCCCCcchhhhccCCC
Q psy13354 393 LIGQNHISKSLINALDKKR----LHHAYLFTGTRGVGKTTISRIL-AKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467 (1342)
Q Consensus 393 lvGq~~~~~~L~~~l~~~~----~~~~~Ll~G~~G~GKT~la~~i-ak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~ 467 (1342)
+.||+.++..|.-++..|. -.-++||.|+||+ ||++++.+ ++.+.. . .+. ++.+.++..+...
T Consensus 215 I~G~e~vK~aLll~L~GG~~k~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR-~-------~ft-~g~~ss~~gLt~s-- 282 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVGKNSERLHVLLAGYPVV-CSEILHHVLDHLAPR-G-------VYV-DLRRTELTDLTAV-- 282 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCSSGGGCCCEEEESCHHH-HHHHHHHHHHHTCSS-E-------EEE-EGGGCCHHHHSEE--
T ss_pred cCCCHHHHHHHHHHHcCCccccCCceeEEEECCCCh-HHHHHHHHHHHhCCC-e-------EEe-cCCCCCccCceEE--
Confidence 8999999988888887762 1114899999999 99999999 664421 0 000 1111111111100
Q ss_pred ccEEEEccCCCcCHHHHHHHHHHHhhcCc-cCCceEEEeccCccCCHHHHHHHHHhhcCC---------CCcEEEEEEeC
Q psy13354 468 MDYIEMDAASTRGINEMAQLLEQTIYAPI-NARYKIYVIDEVHMLTHHAFNAMLKTLEEP---------PKYIKFILATT 537 (1342)
Q Consensus 468 ~d~~~i~~~~~~~~~~i~~ii~~~~~~p~-~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p---------~~~~vlIl~t~ 537 (1342)
+ .+. .+ . .....++ .++.-++++||++.++...+.+|++.||+. |..+.+|.++|
T Consensus 283 --~--r~~---tG-~-------~~~~G~l~LAdgGvl~lDEIn~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~N 347 (506)
T 3f8t_A 283 --L--KED---RG-W-------ALRAGAAVLADGGILAVDHLEGAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAIN 347 (506)
T ss_dssp --E--EES---SS-E-------EEEECHHHHTTTSEEEEECCTTCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEEC
T ss_pred --E--EcC---CC-c-------ccCCCeeEEcCCCeeehHhhhhCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeC
Confidence 0 000 00 0 0000111 234459999999999999999999999863 45566677776
Q ss_pred CCC-----------CChHHHhccE-EEEEE--------------cCCCHHHHHHHHHHHH-HhcCCCcchhHHHHHHHh-
Q psy13354 538 EPQ-----------KIPITVLSRC-IQFNL--------------KKMLHHDIVNNLCYIL-NKENIKFETSALNLIATG- 589 (1342)
Q Consensus 538 ~~~-----------kl~~~L~sR~-~~i~~--------------~~l~~~el~~~l~~~~-~~~g~~i~~~al~~La~~- 589 (1342)
... .++.++++|+ ..+.. ..++.+++.+++...- ......+++++.++|.+.
T Consensus 348 P~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y 427 (506)
T 3f8t_A 348 PGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWY 427 (506)
T ss_dssp CCC--CCSCGGGGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHH
T ss_pred cccccCCCCCccccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHH
Confidence 543 6778999999 33321 2345566776665432 233678999988887753
Q ss_pred -----------------cCCcHHHHHHHHHHHHhhc----CCCCCHHHHHHHh
Q psy13354 590 -----------------AQGSMRDALSLTDQAINYS----SEKITLNSMQEML 621 (1342)
Q Consensus 590 -----------------~~g~lr~a~~~L~kl~~~~----~~~It~e~V~~~v 621 (1342)
.+-++|.+..++.-+-+++ ...++.+||++++
T Consensus 428 ~~tR~~~~~~~~~~~~~~giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai 480 (506)
T 3f8t_A 428 ETRREEVEERLGMGLPTLPVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAA 480 (506)
T ss_dssp HHHHHHHHHHHHTTCCCCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHH
T ss_pred HHHhcCcccccccccccccccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHH
Confidence 1246677777665433332 2348888888877
No 339
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.10 E-value=1.4e-05 Score=97.11 Aligned_cols=60 Identities=22% Similarity=0.364 Sum_probs=45.9
Q ss_pred HHHhhccCCCCccccc-cchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccC
Q psy13354 379 VVLARKYRPSNFNTLI-GQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440 (1342)
Q Consensus 379 ~~l~~k~~p~~f~~lv-Gq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~ 440 (1342)
-+|..||+|.+|+++- +|..++..+...+..+.. .+++.|++|||||+++..+++.+.+.
T Consensus 12 ~~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~~~~--~~li~G~aGTGKT~ll~~~~~~l~~~ 72 (459)
T 3upu_A 12 SGLVPRGSHMTFDDLTEGQKNAFNIVMKAIKEKKH--HVTINGPAGTGATTLTKFIIEALIST 72 (459)
T ss_dssp ---------CCSSCCCHHHHHHHHHHHHHHHSSSC--EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred CCCccccCCCccccCCHHHHHHHHHHHHHHhcCCC--EEEEEeCCCCCHHHHHHHHHHHHHhc
Confidence 4788999999999996 899999999999988763 68999999999999999999998753
No 340
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.04 E-value=3.2e-06 Score=90.56 Aligned_cols=58 Identities=16% Similarity=0.175 Sum_probs=44.8
Q ss_pred HhhccCCCCccccccch----hhHHHHHHHHHcCCC---CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 381 LARKYRPSNFNTLIGQN----HISKSLINALDKKRL---HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 381 l~~k~~p~~f~~lvGq~----~~~~~L~~~l~~~~~---~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+|++.+|+++++.. .+++.+.+.+..... +..++|+||+|+|||++++++++.+.
T Consensus 15 ~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp SCGGGGCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSSCCCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCHHHHcCCHhhccCCChhHHHHHHHHHHHHHHhhhccCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34567788999998743 456667777765421 26799999999999999999999886
No 341
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.02 E-value=4.3e-06 Score=85.06 Aligned_cols=98 Identities=14% Similarity=0.077 Sum_probs=63.0
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHHHHHHHHHHHh
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI 492 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~i~~ii~~~~ 492 (1342)
...++|+||+|+|||+++++++..+...+ .....++.......
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g--------------------------~~~~~~~~~~~~~~----------- 78 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAG--------------------------KNAAYIDAASMPLT----------- 78 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTT--------------------------CCEEEEETTTSCCC-----------
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcC--------------------------CcEEEEcHHHhhHH-----------
Confidence 45689999999999999999999875210 12333433322111
Q ss_pred hcCccCCceEEEeccCccCCHHHHHHHHHhhcCCC--CcEEEEEEeCCCC----CChHHHhccE
Q psy13354 493 YAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP--KYIKFILATTEPQ----KIPITVLSRC 550 (1342)
Q Consensus 493 ~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~--~~~vlIl~t~~~~----kl~~~L~sR~ 550 (1342)
.+..+..+++|||++.+.....+.|+++++... ..+++|++++... .. +.|.||+
T Consensus 79 --~~~~~~~lLilDE~~~~~~~~~~~l~~li~~~~~~g~~~iiits~~~p~~l~~~-~~L~SRl 139 (149)
T 2kjq_A 79 --DAAFEAEYLAVDQVEKLGNEEQALLFSIFNRFRNSGKGFLLLGSEYTPQQLVIR-EDLRTRM 139 (149)
T ss_dssp --GGGGGCSEEEEESTTCCCSHHHHHHHHHHHHHHHHTCCEEEEEESSCTTTSSCC-HHHHHHG
T ss_pred --HHHhCCCEEEEeCccccChHHHHHHHHHHHHHHHcCCcEEEEECCCCHHHcccc-HHHHHHH
Confidence 123356799999999987655677777665321 1234677777543 23 7888886
No 342
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.92 E-value=4.6e-05 Score=108.26 Aligned_cols=141 Identities=13% Similarity=0.163 Sum_probs=100.3
Q ss_pred HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHH
Q psy13354 403 LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN 482 (1342)
Q Consensus 403 L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~ 482 (1342)
+..++..+ +.+||+||||||||.+|+.+...+.. ..+..++.+..+...
T Consensus 1260 l~~~l~~~---~~vLL~GPpGtGKT~la~~~l~~~~~----------------------------~~~~~infsa~ts~~ 1308 (2695)
T 4akg_A 1260 FYDLLNSK---RGIILCGPPGSGKTMIMNNALRNSSL----------------------------YDVVGINFSKDTTTE 1308 (2695)
T ss_dssp HHHHHHHT---CEEEEECSTTSSHHHHHHHHHHSCSS----------------------------CEEEEEECCTTCCHH
T ss_pred HHHHHHCC---CeEEEECCCCCCHHHHHHHHHhcCCC----------------------------CceEEEEeecCCCHH
Confidence 34455555 56899999999999999666543310 245667777777777
Q ss_pred HHHHHHHHHhh----------cCc-cCCceEEEeccCccCCH------HHHHHHHHhhcCCC------------CcEEEE
Q psy13354 483 EMAQLLEQTIY----------API-NARYKIYVIDEVHMLTH------HAFNAMLKTLEEPP------------KYIKFI 533 (1342)
Q Consensus 483 ~i~~ii~~~~~----------~p~-~~~~rvviIDE~~~L~~------~~~~~Ll~~Le~p~------------~~~vlI 533 (1342)
.+...++.... .|. .+.+-|++|||+++... ...+.|...+|... .++.+|
T Consensus 1309 ~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEinmp~~d~yg~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lI 1388 (2695)
T 4akg_A 1309 HILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEINLPKLDKYGSQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIV 1388 (2695)
T ss_dssp HHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTTCSCCCSSSCCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEE
T ss_pred HHHHHHHHHhhhccccCCccccCCCCCceEEEEecccccccccccCchhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEE
Confidence 77777765421 222 34455888999886532 35666777776421 247788
Q ss_pred EEeCCCC-----CChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhc
Q psy13354 534 LATTEPQ-----KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE 574 (1342)
Q Consensus 534 l~t~~~~-----kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~ 574 (1342)
.++|.+. .+.+++.+|+.++.++.|+.+++..++..+++..
T Consensus 1389 aA~Npp~~gGR~~l~~rllRrf~vi~i~~P~~~~l~~I~~~il~~~ 1434 (2695)
T 4akg_A 1389 GACNPPTDPGRIPMSERFTRHAAILYLGYPSGKSLSQIYEIYYKAI 1434 (2695)
T ss_dssp EEECCTTSTTCCCCCHHHHTTEEEEECCCCTTTHHHHHHHHHHHHH
T ss_pred EecCCCccCCCccCChhhhheeeEEEeCCCCHHHHHHHHHHHHHHH
Confidence 8888773 7889999999999999999999999998887653
No 343
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A* 1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Probab=97.89 E-value=4.4e-05 Score=95.73 Aligned_cols=82 Identities=13% Similarity=0.043 Sum_probs=55.8
Q ss_pred HHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCCCCCCCc
Q psy13354 810 KQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883 (1342)
Q Consensus 810 ~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~ 883 (1342)
...+.+.+.+.+|++|+.+ .|++|+.++++|.||.. .+|+ .+.|+.||+|||-|- ..+..+ ++..
T Consensus 137 ~~~L~~~~~~~gnv~i~~~~~v~~l~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlAtGg~s-------~~~~~~--~~~~ 207 (602)
T 1kf6_A 137 LHTLFQTSLQFPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGGAG-------RVYRYN--TNGG 207 (602)
T ss_dssp HHHHHHHHTTCTTEEEEETEEEEEEEEETTEEEEEEEEETTTTEEEEEECSCEEECCCCCG-------GGSSSB--SSCT
T ss_pred HHHHHHHHHhCCCcEEEeCCEEEEEEEeCCEEEEEEEEEcCCCcEEEEEcCeEEECCCCCc-------ccccCc--CCCC
Confidence 3444455556678999766 79999999999999864 5676 699999999999332 112222 2233
Q ss_pred chHHHHHHHHH-cCCCcc
Q psy13354 884 STTSLAKRLKE-LQLSHG 900 (1342)
Q Consensus 884 ~s~~l~~~l~~-~g~~~~ 900 (1342)
.+++.+..+.- .|..+.
T Consensus 208 ~~tGdgi~~a~~aGa~~~ 225 (602)
T 1kf6_A 208 IVTGDGMGMALSHGVPLR 225 (602)
T ss_dssp TCSCHHHHHHHTTTCCEE
T ss_pred CcccHHHHHHHHcCCCcc
Confidence 46677777754 677554
No 344
>2h88_A Succinate dehydrogenase flavoprotein subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_A* 1yq3_A* 2fbw_A* 2h89_A* 2wqy_A* 1zoy_A* 1zp0_A* 3abv_A* 3ae1_A* 3ae2_A* 3ae3_A* 3ae4_A* 3ae5_A* 3ae6_A* 3ae7_A* 3ae8_A* 3ae9_A* 3aea_A* 3aeb_A* 3aec_A* ...
Probab=97.73 E-value=7.2e-05 Score=93.81 Aligned_cols=72 Identities=18% Similarity=0.249 Sum_probs=53.0
Q ss_pred cCeeEEec-ccceEEEeCCeEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHH
Q psy13354 821 LNLYLFQE-EVDDLIIKTNKILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE 894 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~~~~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~ 894 (1342)
.|++|+.+ .|.+|+.++++|.||++ .+|+ .+.|++||+|||-| ...-...++...++|.+..++.
T Consensus 168 ~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~---------~~~y~~~t~~~~~tGdG~~mA~ 238 (621)
T 2h88_A 168 YDTSYFVEYFALDLLMENGECRGVIALCIEDGTIHRFRAKNTVIATGGY---------GRTYFSCTSAHTSTGDGTAMVT 238 (621)
T ss_dssp SCCEEEETEEEEEEEEETTEEEEEEEEETTTCCEEEEEEEEEEECCCCC---------GGGSSSBSSCTTCCCHHHHHHH
T ss_pred CCCEEEEceEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCcc---------ccccCCcCCCCCCChHHHHHHH
Confidence 79999776 79999999999999987 3675 69999999999933 2211223444457788888864
Q ss_pred -cCCCccc
Q psy13354 895 -LQLSHGR 901 (1342)
Q Consensus 895 -~g~~~~~ 901 (1342)
.|..+..
T Consensus 239 raGa~l~~ 246 (621)
T 2h88_A 239 RAGLPCQD 246 (621)
T ss_dssp HTTCCEEC
T ss_pred HcCCCccc
Confidence 8887643
No 345
>1chu_A Protein (L-aspartate oxidase); flavoenzyme, NAD biosynthesis, FAD, oxidoreductase; 2.20A {Escherichia coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1knr_A* 1knp_A*
Probab=97.70 E-value=8.7e-05 Score=91.93 Aligned_cols=80 Identities=16% Similarity=0.114 Sum_probs=57.0
Q ss_pred HHHHHcccCeeEEec-ccceEEE-eCC------eEEEEEeC---CCc--EEEcceEEEecccCCCceeEecccccCCCCC
Q psy13354 814 RFYLENQLNLYLFQE-EVDDLII-KTN------KILGVVTK---IGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRF 880 (1342)
Q Consensus 814 ~~~~~~~~~~~i~~~-~v~~l~~-~~~------~~~gv~~~---~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~ 880 (1342)
.+.+++.+|++|+.+ .|++|+. +++ +|.||.+. +|+ .+.|+.||+||| |.+..-.-.+
T Consensus 145 ~~~~~~~~gv~i~~~~~v~~L~~~~~g~~~~~~~v~Gv~~~~~~~G~~~~i~A~~VVlAtG---------g~~~~~~~~~ 215 (540)
T 1chu_A 145 VSKALNHPNIRVLERTNAVDLIVSDKIGLPGTRRVVGAWVWNRNKETVETCHAKAVVLATG---------GASKVYQYTT 215 (540)
T ss_dssp HHHHHHCTTEEEECSEEEEEEEEGGGTTCCSSCBEEEEEEEETTTTEEEEEECSEEEECCC---------CCGGGSSSBS
T ss_pred HHHHHcCCCCEEEeCcEEEEEEEcCCCCcccCCEEEEEEEEEcCCCcEEEEEcCeEEECCC---------CcccccCCCc
Confidence 344555689999777 7999998 556 89999875 565 699999999999 4332212223
Q ss_pred CCcchHHHHHHHHH-cCCCcccc
Q psy13354 881 GDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 881 g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
+...++|.+..++. .|..+..+
T Consensus 216 ~~~~~tGdG~~ma~~aGa~l~~~ 238 (540)
T 1chu_A 216 NPDISSGDGIAMAWRAGCRVANL 238 (540)
T ss_dssp CGGGCSCHHHHHHHHTTCCEECT
T ss_pred CCCCCchHHHHHHHHcCCCCcCh
Confidence 44457788888864 88877654
No 346
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=97.70 E-value=2.5e-05 Score=89.50 Aligned_cols=57 Identities=14% Similarity=0.283 Sum_probs=43.1
Q ss_pred hhccCCCCccccccc----hhhHHHHHHHHHcCC--CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 382 ARKYRPSNFNTLIGQ----NHISKSLINALDKKR--LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq----~~~~~~L~~~l~~~~--~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
...+++.+|+++++. ..++..+.+.+.... ....++|+||+|+|||++++++++.+.
T Consensus 115 ~~~~~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 115 PKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CGGGGSCCGGGSCCCSHHHHHHHHHHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CHHHHhCCHhhCcCCChHHHHHHHHHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 344567899999863 445566666776531 245789999999999999999999886
No 347
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1
Probab=97.64 E-value=0.00017 Score=90.08 Aligned_cols=96 Identities=15% Similarity=0.114 Sum_probs=60.4
Q ss_pred hHHHHHHHHHHHHHcccCeeEEec-ccceEEEeC-CeEEEEEeC--CCc--EEEcceEEEecccCCCceeEecccccC--
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKT-NKILGVVTK--IGI--KFFSKTVILTTGTFLNGKIHIGLKSYS-- 876 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~-~~~~gv~~~--~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~-- 876 (1342)
+...+.+.+.+.++. .+++|+.+ +|++|+.++ ++|.||++. +|+ .+.|+.||+|||-|-+-.=.+-. +.+
T Consensus 248 ~~~~l~~~L~~~~~~-~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~A~~VVlAtGg~s~~~~~~~~-~~p~~ 325 (566)
T 1qo8_A 248 SGPEIIDTLRKAAKE-QGIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSVVLATGGYGMNKEMIAY-YRPTM 325 (566)
T ss_dssp HHHHHHHHHHHHHHH-TTCCEECSEEEEEEEECTTSBEEEEEEEETTTEEEEEEEEEEEECCCCCTTCHHHHHH-HCGGG
T ss_pred CHHHHHHHHHHHHHh-cCCEEEeCCEEEEEEECCCCcEEEEEEEeCCCcEEEEEcCEEEEecCCcccCHHHHHH-hCccc
Confidence 344455555555554 48999776 799999998 999999876 675 69999999999944321000000 100
Q ss_pred --CCCCCCcchHHHHHHHHH-cCCCcccc
Q psy13354 877 --AGRFGDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 877 --~g~~g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
...++...++|.+..++. +|..+..+
T Consensus 326 ~~~~~~~~~~~tGdg~~~a~~~Ga~~~~~ 354 (566)
T 1qo8_A 326 KDMTSSNNITATGDGVLMAKEIGASMTDI 354 (566)
T ss_dssp TTCEECSCTTCSCHHHHHHHHTTBCEEST
T ss_pred cCCcccCCCCCCcHHHHHHHHcCCeEecC
Confidence 012334446677777754 78766543
No 348
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome, mesaconate, oxidoreductase; HET: HEM FAD; 1.50A {Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A* 1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A* 1q9i_A* 1lj1_A*
Probab=97.56 E-value=0.00022 Score=89.21 Aligned_cols=94 Identities=13% Similarity=0.001 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHcccCeeEEec-ccceEEEeC-CeEEEEEeC--CCc--EEEcceEEEecccCCCceeEeccccc---CC
Q psy13354 807 ILYKQAIRFYLENQLNLYLFQE-EVDDLIIKT-NKILGVVTK--IGI--KFFSKTVILTTGTFLNGKIHIGLKSY---SA 877 (1342)
Q Consensus 807 ~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~-~~~~gv~~~--~g~--~~~~~~vii~tGtfl~g~~~~g~~~~---~~ 877 (1342)
..+.+.+.+.++. .+++|+.+ +|++|+.++ ++|.||++. +|+ .+.|+.||+|||-|-+-.=.+-...+ ..
T Consensus 255 ~~l~~~L~~~~~~-~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~i~a~~VVlAtGg~~~n~~~~~~~~p~~~~~ 333 (571)
T 1y0p_A 255 AHVVQVLYDNAVK-RNIDLRMNTRGIEVLKDDKGTVKGILVKGMYKGYYWVKADAVILATGGFAKNNERVAKLDPSLKGF 333 (571)
T ss_dssp HHHHHHHHHHHHH-TTCEEESSEEEEEEEECTTSCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred HHHHHHHHHHHHh-cCCEEEeCCEeeEeEEcCCCeEEEEEEEeCCCcEEEEECCeEEEeCCCcccCHHHHHHhCccccCC
Confidence 3444555555554 58999776 799999887 899999876 575 69999999999944321100000000 11
Q ss_pred CCCCCcchHHHHHHHHH-cCCCccc
Q psy13354 878 GRFGDFSTTSLAKRLKE-LQLSHGR 901 (1342)
Q Consensus 878 g~~g~~~s~~l~~~l~~-~g~~~~~ 901 (1342)
.+.+...++|.+..+.. .|..+..
T Consensus 334 ~~~~~~~~tGdg~~~a~~~Ga~~~~ 358 (571)
T 1y0p_A 334 ISTNQPGAVGDGLDVAENAGGALKD 358 (571)
T ss_dssp CBCSCTTCSSHHHHHHHHTTCCEEC
T ss_pred cccCCCCCchHHHHHHHHcCCcEeC
Confidence 34455557788888864 8887765
No 349
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Probab=97.55 E-value=0.00016 Score=91.33 Aligned_cols=71 Identities=17% Similarity=0.215 Sum_probs=51.6
Q ss_pred cCeeEEec-ccceEEEeCCeEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCCCCCCCcchHHHHHHHHH
Q psy13354 821 LNLYLFQE-EVDDLIIKTNKILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE 894 (1342)
Q Consensus 821 ~~~~i~~~-~v~~l~~~~~~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s~~l~~~l~~ 894 (1342)
.|++|+.+ .|.+|+.++++|.||++ .+|+ .+.|++||+|||-|-+ .+ .-+++...++|.+..++-
T Consensus 171 ~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~G~~~~i~A~~VVlATGG~~~-------~y--~~tt~~~~~tGdG~~mA~ 241 (660)
T 2bs2_A 171 LGVSIQDRKEAIALIHQDGKCYGAVVRDLVTGDIIAYVAKGTLIATGGYGR-------IY--KNTTNAVVCEGTGTAIAL 241 (660)
T ss_dssp HTCEEECSEEEEEEEEETTEEEEEEEEETTTCCEEEEECSEEEECCCCCGG-------GS--SSBSSCTTCSCHHHHHHH
T ss_pred CCCEEEECcEEEEEEecCCEEEEEEEEECCCCcEEEEEcCEEEEccCcchh-------hc--CCCCCCCCcccHHHHHHH
Confidence 48999777 79999999999999976 4676 4999999999993322 11 113344457788888864
Q ss_pred -cCC-Ccc
Q psy13354 895 -LQL-SHG 900 (1342)
Q Consensus 895 -~g~-~~~ 900 (1342)
.|. .+.
T Consensus 242 ~aGa~~l~ 249 (660)
T 2bs2_A 242 ETGIAQLG 249 (660)
T ss_dssp TTSSSCEE
T ss_pred HcCCChhc
Confidence 787 654
No 350
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A {Desulfovibrio gigas}
Probab=97.51 E-value=0.00019 Score=90.56 Aligned_cols=85 Identities=11% Similarity=0.084 Sum_probs=56.8
Q ss_pred HHHHHHHHcc-cCeeEEec-ccceEEEeCC---eEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCC-C-
Q psy13354 811 QAIRFYLENQ-LNLYLFQE-EVDDLIIKTN---KILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSA-G- 878 (1342)
Q Consensus 811 ~~~~~~~~~~-~~~~i~~~-~v~~l~~~~~---~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~-g- 878 (1342)
+.+.+.+++. +|++|+.+ .|.+|+.+++ +|.||.. .+|+ .+.|++||||||-|-+ .+.++ -
T Consensus 170 ~~L~~~a~~~~~gV~i~~~~~v~dLi~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVLATGG~g~-------~y~~~t~~ 242 (662)
T 3gyx_A 170 VIVAEAAKNALGQDRIIERIFIVKLLLDKNTPNRIAGAVGFNLRANEVHIFKANAMVVACGGAVN-------VYRPRSVG 242 (662)
T ss_dssp HHHHHHHHHHHCTTTEECSEEECCCEECSSSTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS-------SSCCSCCS
T ss_pred HHHHHHHHhcCCCcEEEEceEEEEEEEeCCccceEEEEEEEEcCCCcEEEEEeCEEEECCCcccc-------cccCcCCc
Confidence 3333344444 49999887 7999999987 9999975 3454 5899999999993321 13321 1
Q ss_pred -----CCCCcchHHHHHHHHH-cCCCcccc
Q psy13354 879 -----RFGDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 879 -----~~g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
.++...++|.+..++. +|..+..+
T Consensus 243 ~~~~~~~~~~~~tGdG~~mA~~aGA~l~~m 272 (662)
T 3gyx_A 243 EGMGRAWYPVWNAGSTYTMCAQVGAEMTMM 272 (662)
T ss_dssp GGGGCCSSCTTCBSHHHHHHHTTTCEEECT
T ss_pred cccccccCCCCCcchHHHHHHHhCCcccCC
Confidence 2234557888888865 78766544
No 351
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=97.38 E-value=0.0026 Score=90.66 Aligned_cols=168 Identities=14% Similarity=0.131 Sum_probs=115.2
Q ss_pred hhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccC
Q psy13354 397 NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476 (1342)
Q Consensus 397 ~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~ 476 (1342)
++....+..++..+. +.++.||+|||||++++.+|+.++. .++.++++
T Consensus 632 dr~~~tl~~Al~~~~---~~~l~GpaGtGKTe~vk~LA~~lg~-----------------------------~~v~~nc~ 679 (2695)
T 4akg_A 632 LIGFATLTDSLHQKY---GGCFFGPAGTGKTETVKAFGQNLGR-----------------------------VVVVFNCD 679 (2695)
T ss_dssp HHHHHHHHHHHHTTC---EEEEECCTTSCHHHHHHHHHHTTTC-----------------------------CCEEEETT
T ss_pred HHHHHHHHHHHHhCC---CCcccCCCCCCcHHHHHHHHHHhCC-----------------------------cEEEEECC
Confidence 667788888888763 3588999999999999999999973 46778887
Q ss_pred CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHH-------HhhcC-------------CCCcEEEEEEe
Q psy13354 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAML-------KTLEE-------------PPKYIKFILAT 536 (1342)
Q Consensus 477 ~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll-------~~Le~-------------p~~~~vlIl~t 536 (1342)
......++..++..+.... -.+++||++.+..+...++. ..+.+ .+++..++++.
T Consensus 680 e~ld~~~lg~~~~g~~~~G-----aw~~~DE~nr~~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~ 754 (2695)
T 4akg_A 680 DSFDYQVLSRLLVGITQIG-----AWGCFDEFNRLDEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITL 754 (2695)
T ss_dssp SSCCHHHHHHHHHHHHHHT-----CEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEE
T ss_pred CCCChhHhhHHHHHHHhcC-----CEeeehhhhhcChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEe
Confidence 7777777777765554332 48999999999988766552 22211 12344455555
Q ss_pred C----CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH-------hc------CCcHHHHHH
Q psy13354 537 T----EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT-------GA------QGSMRDALS 599 (1342)
Q Consensus 537 ~----~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~-------~~------~g~lr~a~~ 599 (1342)
| ....++..+++||..+.+..|+.+.+.+++.. ..|....+.....++. .. +-.+|.+.+
T Consensus 755 NPgy~g~~eLP~~Lk~~Fr~v~m~~Pd~~~i~ei~l~---s~Gf~~a~~la~kiv~~~~l~~e~ls~q~hydfglRalks 831 (2695)
T 4akg_A 755 NPGYNGRSELPENLKKSFREFSMKSPQSGTIAEMILQ---IMGFEDSKSLASKIVHFLELLSSKCSSMNHYHFGLRTLKG 831 (2695)
T ss_dssp CCCSSSSCCCCHHHHTTEEEEECCCCCHHHHHHHHHH---HHHCSSHHHHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHH
T ss_pred CCCccCcccccHHHHhheEEEEeeCCCHHHHHHHHHH---hcCCCchHHHHHHHHHHHHHHHHHhCcCCcccccHHHHHH
Confidence 5 34578899999999999999999888887532 3455444444333332 11 236777766
Q ss_pred HHHHH
Q psy13354 600 LTDQA 604 (1342)
Q Consensus 600 ~L~kl 604 (1342)
.|..+
T Consensus 832 vL~~a 836 (2695)
T 4akg_A 832 VLRNC 836 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 352
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.36 E-value=0.00054 Score=71.67 Aligned_cols=72 Identities=11% Similarity=0.221 Sum_probs=51.1
Q ss_pred ccCCceEEEeccCc---cCCHHHHHHHHHhhcCCCCcEEEEEEeC--CCCCChHHHhcc--EEEEEEcCCCHHHHHHHHH
Q psy13354 496 INARYKIYVIDEVH---MLTHHAFNAMLKTLEEPPKYIKFILATT--EPQKIPITVLSR--CIQFNLKKMLHHDIVNNLC 568 (1342)
Q Consensus 496 ~~~~~rvviIDE~~---~L~~~~~~~Ll~~Le~p~~~~vlIl~t~--~~~kl~~~L~sR--~~~i~~~~l~~~el~~~l~ 568 (1342)
+..+++++++||++ .++....+.+.+.+++. ..+ +|+++. ....+...+.+| +.++++.+.+.+++...+.
T Consensus 96 l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~~-~~~-~i~~~H~~h~~~~~~~i~~r~~~~i~~~~~~~r~~~~~~l~ 173 (178)
T 1ye8_A 96 KKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDP-NVN-VVATIPIRDVHPLVKEIRRLPGAVLIELTPENRDVILEDIL 173 (178)
T ss_dssp HHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTCT-TSE-EEEECCSSCCSHHHHHHHTCTTCEEEECCTTTTTTHHHHHH
T ss_pred cccCCCEEEEeCCCCcccCCHHHHHHHHHHHhcC-CCe-EEEEEccCCCchHHHHHHhcCCcEEEEecCcCHHHHHHHHH
Confidence 34567899999953 45677888999999884 333 455553 334566788888 7899999888777766554
Q ss_pred H
Q psy13354 569 Y 569 (1342)
Q Consensus 569 ~ 569 (1342)
+
T Consensus 174 ~ 174 (178)
T 1ye8_A 174 S 174 (178)
T ss_dssp H
T ss_pred H
Confidence 4
No 353
>4dgk_A Phytoene dehydrogenase; the FAD/NAD(P)-binding rossmann fold, oxidoreductase; 2.35A {Pantoea ananatis}
Probab=97.17 E-value=0.00097 Score=81.73 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=43.0
Q ss_pred HHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 809 YKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 809 y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.+.+.+.++. -+.+|+.+ +|++|.+++++++||++.+|+++.||.||.+++
T Consensus 223 l~~aL~~~~~~-~Gg~I~~~~~V~~I~~~~~~~~gV~~~~g~~~~ad~VV~~a~ 275 (501)
T 4dgk_A 223 LVQGMIKLFQD-LGGEVVLNARVSHMETTGNKIEAVHLEDGRRFLTQAVASNAD 275 (501)
T ss_dssp HHHHHHHHHHH-TTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSCEEECCC
T ss_pred hHHHHHHHHHH-hCCceeeecceeEEEeeCCeEEEEEecCCcEEEcCEEEECCC
Confidence 34555566654 46778555 899999999999999999999999999999988
No 354
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.10 E-value=0.0033 Score=90.18 Aligned_cols=174 Identities=11% Similarity=0.139 Sum_probs=110.7
Q ss_pred HHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEccCCCcCHH
Q psy13354 403 LINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN 482 (1342)
Q Consensus 403 L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~~~~~~~~ 482 (1342)
+...+..+ +.+||+||+|||||.++..+...+. ...+..++.++.+...
T Consensus 1297 l~~ll~~~---~pvLL~GptGtGKT~li~~~L~~l~----------------------------~~~~~~infS~~Tta~ 1345 (3245)
T 3vkg_A 1297 LHAWLSEH---RPLILCGPPGSGKTMTLTSTLRAFP----------------------------DFEVVSLNFSSATTPE 1345 (3245)
T ss_dssp HHHHHHTT---CCCEEESSTTSSHHHHHHHHGGGCT----------------------------TEEEEEECCCTTCCHH
T ss_pred HHHHHHCC---CcEEEECCCCCCHHHHHHHHHHhCC----------------------------CCceEEEEeeCCCCHH
Confidence 34444554 3379999999999988765543331 0246678888777777
Q ss_pred HHHHHHHHHh-----------hcCcc-CCceEEEeccCccCCH------HHHHHHHHhhcC-----C-------CCcEEE
Q psy13354 483 EMAQLLEQTI-----------YAPIN-ARYKIYVIDEVHMLTH------HAFNAMLKTLEE-----P-------PKYIKF 532 (1342)
Q Consensus 483 ~i~~ii~~~~-----------~~p~~-~~~rvviIDE~~~L~~------~~~~~Ll~~Le~-----p-------~~~~vl 532 (1342)
.+...++... ..|.. +++-|++|||+++-.. ...+.|..+++. + -.++.+
T Consensus 1346 ~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDiNmp~~D~yGtQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~ 1425 (3245)
T 3vkg_A 1346 LLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEINLPSTDKYGTQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQF 1425 (3245)
T ss_dssp HHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTTTCCCCCTTSCCHHHHHHHHHHHHSEEEETTTTEEEEESSEEE
T ss_pred HHHHHHhhcceEEeccCCCcccCCCcCCceEEEEecccCCCCccccccccHHHHHHHHHHcCCeEECCCCeEEEecCeEE
Confidence 7776665321 12332 4455888999987643 255666666653 1 135667
Q ss_pred EEEeCCC-----CCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCC------CcchhHHHHHHHh------------
Q psy13354 533 ILATTEP-----QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENI------KFETSALNLIATG------------ 589 (1342)
Q Consensus 533 Il~t~~~-----~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~------~i~~~al~~La~~------------ 589 (1342)
|.++|.+ ..+.+++.+|+.++.++.|+.+++..+...++...-. .+.+..++...+.
T Consensus 1426 vaamnPp~~gGr~~l~~Rf~r~F~vi~i~~ps~esL~~If~til~~~l~~~p~l~~~~~~lv~ati~ly~~v~~~~lp~~ 1505 (3245)
T 3vkg_A 1426 VGACNPPTDAGRVQLTHRFLRHAPILLVDFPSTSSLTQIYGTFNRALMKLLPNLRSFADNLTDAMVEFYSESQKRFTPDI 1505 (3245)
T ss_dssp EEEECCTTSTTCCCCCHHHHTTCCEEECCCCCHHHHHHHHHHHHHHHTTSCGGGTTSHHHHHHHHHHHHHHHHHHSCTTT
T ss_pred EEEcCCCCCCCCccCCHHHHhhceEEEeCCCCHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 7777654 4678999999999999999999999987665543211 1112222222221
Q ss_pred ---cCCcHHHHHHHHHHHHhh
Q psy13354 590 ---AQGSMRDALSLTDQAINY 607 (1342)
Q Consensus 590 ---~~g~lr~a~~~L~kl~~~ 607 (1342)
.--|+|++.+.++-++.+
T Consensus 1506 k~HY~FnLRDLsrv~qGll~~ 1526 (3245)
T 3vkg_A 1506 QAHYIYSPRELSRWDRALLEA 1526 (3245)
T ss_dssp STTCCCCHHHHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHh
Confidence 124899998888766543
No 355
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.09 E-value=0.0082 Score=75.16 Aligned_cols=206 Identities=15% Similarity=0.122 Sum_probs=105.7
Q ss_pred hhccCCCCccccccchhhHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhcc-CCCCCCCCcccCCCCCCcc-
Q psy13354 382 ARKYRPSNFNTLIGQNHISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNC-IGIDGNGGITSQPCGKCSV- 458 (1342)
Q Consensus 382 ~~k~~p~~f~~lvGq~~~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~-~~~~~~~~~~~~~c~~~~~- 458 (1342)
.....|.....++|.+..++.|.+.+... .-...++++|+.|+|||++|..+++.... ..... ++.....+.....
T Consensus 115 ~~~~~P~~~~~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~-~~v~wv~~~~~~~~ 193 (591)
T 1z6t_A 115 CEGGVPQRPVVFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFP-GGVHWVSVGKQDKS 193 (591)
T ss_dssp HHTTCCCCCSSCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCT-TCEEEEEEESCCHH
T ss_pred ccCCCCCCCCeecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCC-CceEEEECCCCchH
Confidence 34456777788999999999999999742 23467999999999999999998753210 00000 0000000000000
Q ss_pred --hhhhccC-CCccE-EEEccCCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEE
Q psy13354 459 --CVKIDNG-CFMDY-IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFIL 534 (1342)
Q Consensus 459 --~~~~~~~-~~~d~-~~i~~~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl 534 (1342)
...+... ..... ...........+.+.+.+...... ..++-+||+|+++.. ..++.+ ++.+.+|+
T Consensus 194 ~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~--~~~~~LLVLDdv~~~------~~l~~l---~~~~~ilv 262 (591)
T 1z6t_A 194 GLLMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLR--KHPRSLLILDDVWDS------WVLKAF---DSQCQILL 262 (591)
T ss_dssp HHHHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHH--TCTTCEEEEEEECCH------HHHHTT---CSSCEEEE
T ss_pred HHHHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHcc--CCCCeEEEEeCCCCH------HHHHHh---cCCCeEEE
Confidence 0000000 00000 000000111122222222211110 113458999999852 123333 44566677
Q ss_pred EeCCCCCChHHHhccEEEEE-EcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhcCCcHHHHHHHH
Q psy13354 535 ATTEPQKIPITVLSRCIQFN-LKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLT 601 (1342)
Q Consensus 535 ~t~~~~kl~~~L~sR~~~i~-~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~~g~lr~a~~~L 601 (1342)
+|.... ...........+. ..+++.++..+.+...+... ..-.++.+..|++.++|.+..+....
T Consensus 263 TsR~~~-~~~~~~~~~~~v~~l~~L~~~ea~~L~~~~~~~~-~~~~~~~~~~i~~~~~G~PLal~~~a 328 (591)
T 1z6t_A 263 TTRDKS-VTDSVMGPKYVVPVESSLGKEKGLEILSLFVNMK-KADLPEQAHSIIKECKGSPLVVSLIG 328 (591)
T ss_dssp EESCGG-GGTTCCSCEEEEECCSSCCHHHHHHHHHHHHTSC-GGGSCTHHHHHHHHHTTCHHHHHHHH
T ss_pred ECCCcH-HHHhcCCCceEeecCCCCCHHHHHHHHHHHhCCC-cccccHHHHHHHHHhCCCcHHHHHHH
Confidence 665433 1111112222222 25899999999988776431 11225678899999999998776443
No 356
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=96.91 E-value=0.0016 Score=69.21 Aligned_cols=61 Identities=11% Similarity=0.170 Sum_probs=41.5
Q ss_pred CCceEEEeccCccC--CH-HH--HHHHHHhhcCC-CCcEEEEEEeCCCCCChHHHhccE-EEEEEcCC
Q psy13354 498 ARYKIYVIDEVHML--TH-HA--FNAMLKTLEEP-PKYIKFILATTEPQKIPITVLSRC-IQFNLKKM 558 (1342)
Q Consensus 498 ~~~rvviIDE~~~L--~~-~~--~~~Ll~~Le~p-~~~~vlIl~t~~~~kl~~~L~sR~-~~i~~~~l 558 (1342)
+...||||||++.+ +. +. ...++..++.. .....+|+++..++.+...|++|+ ..+++.++
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~ 153 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIPENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASN 153 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCCHHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEEC
T ss_pred cCceEEEEEChhhhccCccccchhHHHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCc
Confidence 34669999999987 32 11 11355555543 334567888888888989999998 56777663
No 357
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.82 E-value=0.00064 Score=71.50 Aligned_cols=57 Identities=19% Similarity=0.205 Sum_probs=35.5
Q ss_pred CceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCC------CChHHHhccE-EEEEEcCC
Q psy13354 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ------KIPITVLSRC-IQFNLKKM 558 (1342)
Q Consensus 499 ~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~------kl~~~L~sR~-~~i~~~~l 558 (1342)
+..+|+|||+++++.+..+.|....++ ...+|++....+ ...+.|.+++ .+.++...
T Consensus 76 ~~dvviIDE~Q~~~~~~~~~l~~l~~~---~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~~i 139 (184)
T 2orw_A 76 DTRGVFIDEVQFFNPSLFEVVKDLLDR---GIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKKAV 139 (184)
T ss_dssp TEEEEEECCGGGSCTTHHHHHHHHHHT---TCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECCBC
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHC---CCCEEEEeeccccccCCccchHHHHHHhhheEEeeee
Confidence 567999999999977777777777766 233444332222 2234677777 45555443
No 358
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.76 E-value=0.0098 Score=73.72 Aligned_cols=193 Identities=12% Similarity=0.073 Sum_probs=97.1
Q ss_pred ccchhhHHHHHHHHHcC--CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCc---chhh----hcc
Q psy13354 394 IGQNHISKSLINALDKK--RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCS---VCVK----IDN 464 (1342)
Q Consensus 394 vGq~~~~~~L~~~l~~~--~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~---~~~~----~~~ 464 (1342)
+|.+..++.|.+.+..+ .-...+.++|+.|+|||++|+.+++.........+.+. ...|..-. .... +..
T Consensus 131 ~GR~~~~~~l~~~L~~~~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~-~wv~vs~~~~~~~~~~~~~il~ 209 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEMCDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSI-VWLKDSGTAPKSTFDLFTDILL 209 (549)
T ss_dssp CCCHHHHHHHHHHHHHHTTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEE-EEEECCCCSTTHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcccCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcE-EEEEECCCCCCCHHHHHHHHHH
Confidence 49999999999998654 23467899999999999999999973110000000000 00000000 0000 000
Q ss_pred --CCCccEEEEccCCCcCHHHHHHHHHHHhhcCccCC-ceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCC
Q psy13354 465 --GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQK 541 (1342)
Q Consensus 465 --~~~~d~~~i~~~~~~~~~~i~~ii~~~~~~p~~~~-~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~k 541 (1342)
+...+............+.+...+... +.++ +-+||+|+++.... . .+... +...+|+||... .
T Consensus 210 ~l~~~~~~~~~~~~~~~~~~~l~~~l~~~----L~~~kr~LlVLDdv~~~~~--~-~~~~~-----~gs~ilvTTR~~-~ 276 (549)
T 2a5y_B 210 MLKSEDDLLNFPSVEHVTSVVLKRMICNA----LIDRPNTLFVFDDVVQEET--I-RWAQE-----LRLRCLVTTRDV-E 276 (549)
T ss_dssp HHTTTSCCTTCCCCTTCCHHHHHHHHHHH----HTTSTTEEEEEEEECCHHH--H-HHHHH-----TTCEEEEEESBG-G
T ss_pred HHhcCcccccccccccccHHHHHHHHHHH----HcCCCcEEEEEECCCCchh--h-ccccc-----CCCEEEEEcCCH-H
Confidence 000000000000000011111111111 1233 55888999987432 1 22211 345566666542 2
Q ss_pred ChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCC-CcchhHHHHHHHhcCCcHHHHHHH
Q psy13354 542 IPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENI-KFETSALNLIATGAQGSMRDALSL 600 (1342)
Q Consensus 542 l~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~-~i~~~al~~La~~~~g~lr~a~~~ 600 (1342)
+..........+++.+++.++..+.+.+++-.... .-.++....|++.++|.+..+...
T Consensus 277 v~~~~~~~~~~~~l~~L~~~ea~~Lf~~~a~~~~~~~~~~~~~~~I~~~c~GlPLAl~~~ 336 (549)
T 2a5y_B 277 ISNAASQTCEFIEVTSLEIDECYDFLEAYGMPMPVGEKEEDVLNKTIELSSGNPATLMMF 336 (549)
T ss_dssp GGGGCCSCEEEEECCCCCHHHHHHHHHHTSCCCC--CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHcCCCCeEEECCCCCHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHhCCChHHHHHH
Confidence 22222123367999999999998888766422211 112346788899999999877644
No 359
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=96.58 E-value=0.025 Score=77.22 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=109.9
Q ss_pred HHHHhhccCCCCccccccchhhHHHHHHHHHcC-CCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCC
Q psy13354 378 KVVLARKYRPSNFNTLIGQNHISKSLINALDKK-RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKC 456 (1342)
Q Consensus 378 ~~~l~~k~~p~~f~~lvGq~~~~~~L~~~l~~~-~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~ 456 (1342)
..++...--|.....++|.+..++.|.+.+... .-...+.|+|+.|+|||++|+.+++...... .|..+
T Consensus 111 ~~~l~~~~~p~~~~~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~----------~~~~~ 180 (1249)
T 3sfz_A 111 RTVLCEGGVPQRPVIFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLE----------GCFSG 180 (1249)
T ss_dssp HHHHHHTTCCCCCSSCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCCHHHHT----------TTSTT
T ss_pred hheeccCCCCCCCceeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcChhHHH----------hhCCC
Confidence 344555667878888999999999999999643 3346789999999999999998876531000 00000
Q ss_pred cchhhhccCCCccEEEEccC-------------------------CCcCHHHHHHHHHHHhhcCccCCceEEEeccCccC
Q psy13354 457 SVCVKIDNGCFMDYIEMDAA-------------------------STRGINEMAQLLEQTIYAPINARYKIYVIDEVHML 511 (1342)
Q Consensus 457 ~~~~~~~~~~~~d~~~i~~~-------------------------~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L 511 (1342)
.. -++.+... .....+.+.+.+.... .-..++-+||+|+++..
T Consensus 181 ~~----------~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l--~~~~~~~LlvlDd~~~~ 248 (1249)
T 3sfz_A 181 GV----------HWVSIGKQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLM--LRKHPRSLLILDDVWDP 248 (1249)
T ss_dssp CE----------EEEECCSCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHT--SSSSCSCEEEEESCCCH
T ss_pred eE----------EEEEECCcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHH--hccCCCEEEEEecCCCH
Confidence 00 01111000 0011122222222111 00122558899999843
Q ss_pred CHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccEEEEEEcC-CCHHHHHHHHHHHHHhcCCCcchhHHHHHHHhc
Q psy13354 512 THHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK-MLHHDIVNNLCYILNKENIKFETSALNLIATGA 590 (1342)
Q Consensus 512 ~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~~~i~~~~-l~~~el~~~l~~~~~~~g~~i~~~al~~La~~~ 590 (1342)
..+ +..++...+|++|.... +..........+...+ ++.++-.+.+...+....-. .++....|++.+
T Consensus 249 -----~~~----~~~~~~~~ilvTtR~~~-~~~~~~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~ 317 (1249)
T 3sfz_A 249 -----WVL----KAFDNQCQILLTTRDKS-VTDSVMGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKEC 317 (1249)
T ss_dssp -----HHH----TTTCSSCEEEEEESSTT-TTTTCCSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHT
T ss_pred -----HHH----HhhcCCCEEEEEcCCHH-HHHhhcCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHh
Confidence 112 22244566677766543 2222223335677775 99999988888776433222 345688899999
Q ss_pred CCcHHHHHHH
Q psy13354 591 QGSMRDALSL 600 (1342)
Q Consensus 591 ~g~lr~a~~~ 600 (1342)
+|.+..+...
T Consensus 318 ~glPLal~~~ 327 (1249)
T 3sfz_A 318 KGSPLVVSLI 327 (1249)
T ss_dssp TTCHHHHHHH
T ss_pred CCCHHHHHHH
Confidence 9988876543
No 360
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=96.22 E-value=0.12 Score=74.69 Aligned_cols=170 Identities=14% Similarity=0.078 Sum_probs=113.6
Q ss_pred chhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCCccEEEEcc
Q psy13354 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475 (1342)
Q Consensus 396 q~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~~d~~~i~~ 475 (1342)
-+++.-+|..++..+.. -.+.||.|||||++++.+|+.++. .++.+++
T Consensus 590 Tdrcy~tl~~Al~~~~g---g~~~GPaGtGKTet~k~La~~lgr-----------------------------~~~vfnC 637 (3245)
T 3vkg_A 590 TDRCYLTLTQALESRMG---GNPFGPAGTGKTETVKALGSQLGR-----------------------------FVLVFCC 637 (3245)
T ss_dssp HHHHHHHHHHHHHTTCE---EEEECSTTSSHHHHHHHHHHHTTC-----------------------------CEEEEEC
T ss_pred HHHHHHHHHHHHHhcCC---CCCCCCCCCCHHHHHHHHHHHhCC-----------------------------eEEEEeC
Confidence 37788889999987643 368899999999999999999983 3567777
Q ss_pred CCCcCHHHHHHHHHHHhhcCccCCceEEEeccCccCCHHHHHHHHHhhc-----------------C----CCCcEEEEE
Q psy13354 476 ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLE-----------------E----PPKYIKFIL 534 (1342)
Q Consensus 476 ~~~~~~~~i~~ii~~~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le-----------------~----p~~~~vlIl 534 (1342)
+.......+..++.-+... .-..++||++++..+....+...+. . -.+.+.+++
T Consensus 638 ~~~~d~~~~g~i~~G~~~~-----GaW~cfDEfNrl~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfi 712 (3245)
T 3vkg_A 638 DEGFDLQAMSRIFVGLCQC-----GAWGCFDEFNRLEERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFV 712 (3245)
T ss_dssp SSCCCHHHHHHHHHHHHHH-----TCEEEEETTTSSCHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEE
T ss_pred CCCCCHHHHHHHHhhHhhc-----CcEEEehhhhcCCHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEE
Confidence 7666555665555443321 1267999999999876655443221 1 122343444
Q ss_pred EeC----CCCCChHHHhccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchhHHHHHHH---h----------cCCcHHHH
Q psy13354 535 ATT----EPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT---G----------AQGSMRDA 597 (1342)
Q Consensus 535 ~t~----~~~kl~~~L~sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~al~~La~---~----------~~g~lr~a 597 (1342)
+.| ....++..+++++..+.+..|+.+.+.+++ +-..|..-.......++. . .+-.||.+
T Consensus 713 TmNpgY~gr~eLP~nLk~lFr~v~m~~Pd~~~i~ei~---L~s~Gf~~a~~La~k~~~~~~l~~e~LS~Q~HYDfGLRal 789 (3245)
T 3vkg_A 713 TMNPGYAGRSNLPDNLKKLFRSMAMIKPDREMIAQVM---LYSQGFKTAEVLAGKIVPLFKLCQEQLSAQSHYDFGLRAL 789 (3245)
T ss_dssp CBCCCGGGCCCSCHHHHTTEEEEECCSCCHHHHHHHH---HHTTTCSCHHHHHHHHHHHHHHHHHSSCCCTTCCCSHHHH
T ss_pred EeCCCccCcccChHHHHhhcEEEEEeCCCHHHHHHHH---HHHcccchHHHHHHHHHHHHHHHHHHhCCCCCCCCChHHH
Confidence 444 245889999999999999999998888875 446676433333222222 1 12468888
Q ss_pred HHHHHHHH
Q psy13354 598 LSLTDQAI 605 (1342)
Q Consensus 598 ~~~L~kl~ 605 (1342)
.+.|.-+.
T Consensus 790 KsVL~~AG 797 (3245)
T 3vkg_A 790 KSVLVSAG 797 (3245)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 87776544
No 361
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=96.04 E-value=0.013 Score=63.32 Aligned_cols=111 Identities=15% Similarity=0.099 Sum_probs=57.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCC--CccEEEEccCCCcCHHHHHHHHHH
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC--FMDYIEMDAASTRGINEMAQLLEQ 490 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~--~~d~~~i~~~~~~~~~~i~~ii~~ 490 (1342)
...++++|++|+||||++..++..+...+.... ..++..... ....+.+.. ...-..+ ....++.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVl-i~~~~~d~r--~~~~i~srlG~~~~~~~~--------~~~~~i~~~ 80 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYL-VFKPKIDTR--SIRNIQSRTGTSLPSVEV--------ESAPEILNY 80 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEE-EEEECCCGG--GCSSCCCCCCCSSCCEEE--------SSTHHHHHH
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEE-EEEeccCch--HHHHHHHhcCCCcccccc--------CCHHHHHHH
Confidence 457899999999999999988888753321100 000000000 000111000 0011111 112334444
Q ss_pred HhhcCccCCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeC
Q psy13354 491 TIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537 (1342)
Q Consensus 491 ~~~~p~~~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~ 537 (1342)
+.......++.+|+|||+++++.+..+.+..+.+. .+.+|++..
T Consensus 81 i~~~~~~~~~dvViIDEaQ~l~~~~ve~l~~L~~~---gi~Vil~Gl 124 (223)
T 2b8t_A 81 IMSNSFNDETKVIGIDEVQFFDDRICEVANILAEN---GFVVIISGL 124 (223)
T ss_dssp HHSTTSCTTCCEEEECSGGGSCTHHHHHHHHHHHT---TCEEEEECC
T ss_pred HHHHhhCCCCCEEEEecCccCcHHHHHHHHHHHhC---CCeEEEEec
Confidence 44333334578999999999987766666444443 344555543
No 362
>2ywl_A Thioredoxin reductase related protein; uncharacterized conserved protein, rossmann fold, structural genomics, NPPSFA; HET: FAD; 1.60A {Thermus thermophilus} PDB: 2cvj_A*
Probab=95.88 E-value=0.064 Score=55.47 Aligned_cols=54 Identities=11% Similarity=-0.049 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+...+.+.+++.+++ .+++++.++|+++..+++. ..|.+.+| ++.+|.||+|||
T Consensus 54 ~~~~~~~~l~~~~~~-~gv~v~~~~v~~i~~~~~~-~~v~~~~g-~i~ad~vI~A~G 107 (180)
T 2ywl_A 54 SGEELLRRLEAHARR-YGAEVRPGVVKGVRDMGGV-FEVETEEG-VEKAERLLLCTH 107 (180)
T ss_dssp CHHHHHHHHHHHHHH-TTCEEEECCCCEEEECSSS-EEEECSSC-EEEEEEEEECCT
T ss_pred CHHHHHHHHHHHHHH-cCCEEEeCEEEEEEEcCCE-EEEEECCC-EEEECEEEECCC
Confidence 345566777777765 4689977799999876554 46788888 899999999999
No 363
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=95.80 E-value=0.018 Score=71.41 Aligned_cols=26 Identities=27% Similarity=0.455 Sum_probs=23.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++++|+||||||+++..++..+..
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~ 230 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAES 230 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 56899999999999999999988763
No 364
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=95.53 E-value=0.064 Score=58.52 Aligned_cols=22 Identities=23% Similarity=0.155 Sum_probs=20.1
Q ss_pred EEEEccCcccHHHHHHHHHHHh
Q psy13354 416 YLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L 437 (1342)
.+++||+|+|||.++..++..+
T Consensus 111 ~ll~~~tG~GKT~~a~~~~~~~ 132 (237)
T 2fz4_A 111 GCIVLPTGSGKTHVAMAAINEL 132 (237)
T ss_dssp EEEEESSSTTHHHHHHHHHHHS
T ss_pred EEEEeCCCCCHHHHHHHHHHHc
Confidence 7999999999999999888776
No 365
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=95.25 E-value=0.095 Score=67.86 Aligned_cols=44 Identities=23% Similarity=0.158 Sum_probs=38.0
Q ss_pred cccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHH
Q psy13354 393 LIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKC 436 (1342)
Q Consensus 393 lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~ 436 (1342)
.+|.+..++.|.+.+........+.++|+.|+|||++|+.+++.
T Consensus 130 ~VGRe~eLeeL~elL~~~d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHCCSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhccCCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 39999999999999976444578999999999999999999863
No 366
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.15 E-value=0.058 Score=56.67 Aligned_cols=74 Identities=18% Similarity=0.298 Sum_probs=48.6
Q ss_pred ccCCceEEEeccCccC---CHHHHHHHHHhhcCCCCcEEEE--EEe-CCC-CCChHHHhcc--EEEEEEcCCCHHHHHHH
Q psy13354 496 INARYKIYVIDEVHML---THHAFNAMLKTLEEPPKYIKFI--LAT-TEP-QKIPITVLSR--CIQFNLKKMLHHDIVNN 566 (1342)
Q Consensus 496 ~~~~~rvviIDE~~~L---~~~~~~~Ll~~Le~p~~~~vlI--l~t-~~~-~kl~~~L~sR--~~~i~~~~l~~~el~~~ 566 (1342)
...++.++|+||+..+ +....+.|.++++...+ + ++ ++. .+. ..+...+..+ +.++++.+-+.+.+..-
T Consensus 102 ~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~~~~-~-ilgti~vsh~~~~~~vd~i~~~~~~~i~~~~~~nr~~~~~~ 179 (189)
T 2i3b_A 102 SGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGT-I-ILGTIPVPKGKPLALVEEIRNRKDVKVFNVTKENRNHLLPD 179 (189)
T ss_dssp CSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSC-C-EEEECCCCCSSCCTTHHHHHTTCCSEEEECCSSSGGGHHHH
T ss_pred hccCCCEEEEeCCCccccccHHHHHHHHHHHhCCCc-E-EEEEeecCCCCchHHHHHHeecCCcEEEEeChHhHHHHHHH
Confidence 3567789999997655 44567888888886532 3 32 221 332 2566777664 48899988887777766
Q ss_pred HHHHH
Q psy13354 567 LCYIL 571 (1342)
Q Consensus 567 l~~~~ 571 (1342)
+...+
T Consensus 180 i~~~~ 184 (189)
T 2i3b_A 180 IVTCV 184 (189)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65444
No 367
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=95.09 E-value=0.033 Score=62.96 Aligned_cols=23 Identities=26% Similarity=0.400 Sum_probs=21.1
Q ss_pred cEEEEEccCcccHHHHHHHHHHH
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKC 436 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~ 436 (1342)
..++|+||||+|||+++..++..
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~ 146 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEA 146 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHh
Confidence 45799999999999999999987
No 368
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid, amadoriase, deglycation, fructosamine oxidase; HET: MSE FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Probab=94.97 E-value=0.025 Score=67.82 Aligned_cols=58 Identities=19% Similarity=0.163 Sum_probs=50.3
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec----ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE----EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~----~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
++|...+-+.+.+.+++ .+++|+.+ +|++|..+++++.||.|.+|.++.||.||+|||
T Consensus 157 ~~~~~~~~~~L~~~a~~-~Gv~i~~~t~~~~V~~i~~~~~~v~gV~t~~G~~i~Ad~VV~AtG 218 (438)
T 3dje_A 157 WAHARNALVAAAREAQR-MGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAG 218 (438)
T ss_dssp EECHHHHHHHHHHHHHH-TTCEEEESTTTTCEEEEEEETTEEEEEEETTTEEEECSEEEECCG
T ss_pred EecHHHHHHHHHHHHHh-cCCEEEeCCcCceEEEEEecCCeEEEEEECCCCEEECCEEEECCC
Confidence 66777777777777765 47999766 799999999999999999998899999999999
No 369
>4a9w_A Monooxygenase; baeyer-villiger, FAD, oxidoreductase; HET: FAD; 2.72A {Stenotrophomonas maltophilia}
Probab=94.66 E-value=0.41 Score=54.79 Aligned_cols=56 Identities=18% Similarity=0.202 Sum_probs=45.5
Q ss_pred hHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEeccc
Q psy13354 805 DRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGT 862 (1342)
Q Consensus 805 d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tGt 862 (1342)
.+..+.+++++.++. .+++++.+ +|+++..+++.+.+|.+.+| .+.+|.||+|||.
T Consensus 74 ~~~~~~~~l~~~~~~-~~~~~~~~~~v~~i~~~~~~~~~v~~~~g-~~~~d~vV~AtG~ 130 (357)
T 4a9w_A 74 ARAEVLAYLAQYEQK-YALPVLRPIRVQRVSHFGERLRVVARDGR-QWLARAVISATGT 130 (357)
T ss_dssp BHHHHHHHHHHHHHH-TTCCEECSCCEEEEEEETTEEEEEETTSC-EEEEEEEEECCCS
T ss_pred CHHHHHHHHHHHHHH-cCCEEEcCCEEEEEEECCCcEEEEEeCCC-EEEeCEEEECCCC
Confidence 466777777777765 47888665 89999988888777888887 8999999999994
No 370
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=94.63 E-value=0.21 Score=53.53 Aligned_cols=168 Identities=14% Similarity=0.139 Sum_probs=83.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCCCCCcchhhhccCCC--ccEEEEccCCCcCHHHHHHHHHHH
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF--MDYIEMDAASTRGINEMAQLLEQT 491 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~--~d~~~i~~~~~~~~~~i~~ii~~~ 491 (1342)
..+++.|++|+|||+++-.++..+...+.... ..+-++-+.......+..... ...+.++.... ...++..++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~-v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~-~e~~l~~~L~-- 82 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM-AGVVETHGRAETEALLNGLPQQPLLRTEYRGMTL-EEMDLDALLK-- 82 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE-EEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEE-EECCHHHHHH--
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE-EEEeCCCCChhHHHHhcCccccCcceeecCCccc-ccccHHHHHh--
Confidence 45899999999999999999998865432210 001111111111111111111 11112211100 0012333332
Q ss_pred hhcCccCCceEEEeccCccCCHH------HHHHHHHhhcCCCCcEEEEEEeC------------------CCCCChHHHh
Q psy13354 492 IYAPINARYKIYVIDEVHMLTHH------AFNAMLKTLEEPPKYIKFILATT------------------EPQKIPITVL 547 (1342)
Q Consensus 492 ~~~p~~~~~rvviIDE~~~L~~~------~~~~Ll~~Le~p~~~~vlIl~t~------------------~~~kl~~~L~ 547 (1342)
.++.++||||+...+.. .+..+...++.. +-++.++| -.+.++..+.
T Consensus 83 ------~~pdlvIVDElG~~~~~~~r~~~~~qDV~~~l~sg---idVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~ 153 (228)
T 2r8r_A 83 ------AAPSLVLVDELAHTNAPGSRHTKRWQDIQELLAAG---IDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVL 153 (228)
T ss_dssp ------HCCSEEEESCTTCBCCTTCSSSBHHHHHHHHHHTT---CEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHH
T ss_pred ------cCCCEEEEeCCCCCCcccchhHHHHHHHHHHHcCC---CCEEEEccccccccHHHHHHHHcCCCcCCcCccHHH
Confidence 13569999997754211 233333344432 23445554 1245677888
Q ss_pred ccEEEEEEcCCCHHHHHHHHHHHHHhcCCCcchh-HHHHHHHh-cCCcHHHHHH
Q psy13354 548 SRCIQFNLKKMLHHDIVNNLCYILNKENIKFETS-ALNLIATG-AQGSMRDALS 599 (1342)
Q Consensus 548 sR~~~i~~~~l~~~el~~~l~~~~~~~g~~i~~~-al~~La~~-~~g~lr~a~~ 599 (1342)
.++..+.+-.++++++.+.+ ++|..+.++ +-..+..+ ..+|+-.+..
T Consensus 154 ~~a~~v~lvD~~p~~l~~rl-----~~g~vy~~~~~~~a~~~~f~~~nl~~lre 202 (228)
T 2r8r_A 154 QEAFDLVLIDLPPRELLERL-----RDGKVYVPEQARAAIDAFFTQTNLTALRE 202 (228)
T ss_dssp HTCSEEEEBCCCHHHHHHHH-----HTTCCCCTTCCHHHHHHHCCHHHHHHHHH
T ss_pred hhCCeEEEecCCHHHHHHHH-----HCCCccChhHHHHHHHhhhchhhHHHHHH
Confidence 88877888888888877664 345443333 33333333 3455554443
No 371
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD; 2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4 d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Probab=94.51 E-value=0.068 Score=66.44 Aligned_cols=95 Identities=12% Similarity=0.030 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcccCeeEEec-ccceEEEeC-CeEEEEEeC--CCc--EEEcceEEEecccCCCceeEeccccc---CC
Q psy13354 807 ILYKQAIRFYLENQLNLYLFQE-EVDDLIIKT-NKILGVVTK--IGI--KFFSKTVILTTGTFLNGKIHIGLKSY---SA 877 (1342)
Q Consensus 807 ~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~-~~~~gv~~~--~g~--~~~~~~vii~tGtfl~g~~~~g~~~~---~~ 877 (1342)
..+.+.+.+.+++ .+++|+.+ +|++|+.++ ++|.||++. +|+ .+.|+.||+|||-|-+-.=.+-...+ ..
T Consensus 255 ~~l~~~L~~~~~~-~gv~i~~~t~v~~l~~~~~g~v~GV~~~~~~G~~~~i~A~~VVlAtGg~~~~~~~~~~~~p~~~~~ 333 (572)
T 1d4d_A 255 AHVAQVLWDNAVK-RGTDIRLNSRVVRILEDASGKVTGVLVKGEYTGYYVIKADAVVIAAGGFAKNNERVSKYDPKLKGF 333 (572)
T ss_dssp HHHHHHHHHHHHH-TTCEEESSEEEEEEEEC--CCEEEEEEEETTTEEEEEECSEEEECCCCCTTCHHHHHHHCGGGTTC
T ss_pred HHHHHHHHHHHHH-cCCeEEecCEEEEEEECCCCeEEEEEEEeCCCcEEEEEcCEEEEeCCCCccCHHHHHHhCccccCC
Confidence 3444555555554 48999766 799999888 899999876 564 69999999999944321000000000 12
Q ss_pred CCCCCcchHHHHHHHHH-cCCCcccc
Q psy13354 878 GRFGDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 878 g~~g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
+.++...++|.+..+.. +|..+..+
T Consensus 334 ~~~~~~~~tGdgi~~a~~~Ga~~~~~ 359 (572)
T 1d4d_A 334 KATNHPGATGDGLDVALQAGAATRDL 359 (572)
T ss_dssp CBSSCTTCSSHHHHHHHHTTBCEECT
T ss_pred CccCCCCCccHHHHHHHHcCCeEeCC
Confidence 33445556777777754 78776543
No 372
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.48 E-value=0.058 Score=67.48 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.1
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+.++++|++|||||+++..+...+.
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l~ 189 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAALI 189 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999998887775
No 373
>2wdq_A Succinate dehydrogenase flavoprotein subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_A* 2acz_A* 1nek_A* 2wdr_A* 2wdv_A* 2wp9_A* 2ws3_A* 2wu2_A* 2wu5_A*
Probab=94.27 E-value=0.081 Score=65.92 Aligned_cols=82 Identities=15% Similarity=0.110 Sum_probs=56.7
Q ss_pred HHHHHHHHcccCeeEEec-ccceEEEe-CCeEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccCCCCCCCc
Q psy13354 811 QAIRFYLENQLNLYLFQE-EVDDLIIK-TNKILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883 (1342)
Q Consensus 811 ~~~~~~~~~~~~~~i~~~-~v~~l~~~-~~~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~ 883 (1342)
+.+.+.+.+ .|++|+.+ +|++|+.+ +++|.||.. .+|+ .+.|+.||+|||-|-+ .+.. .++..
T Consensus 147 ~~L~~~~~~-~gv~i~~~~~v~~L~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGg~~~-------~y~~--~~~~~ 216 (588)
T 2wdq_A 147 HTLYQQNLK-NHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGR-------IYQS--TTNAH 216 (588)
T ss_dssp HHHHHHHHH-TTCEEEETEEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEEEECCCCCGG-------GSSS--BSSCT
T ss_pred HHHHHHHHh-CCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCeEEEEEcCEEEECCCCCcc-------ccCC--cCCCC
Confidence 333344443 48999776 79999996 789999985 4565 5999999999993321 2222 23445
Q ss_pred chHHHHHHHHH-cCCCcccc
Q psy13354 884 STTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 884 ~s~~l~~~l~~-~g~~~~~~ 902 (1342)
.++|.+..++. +|..+..+
T Consensus 217 ~~tGdG~~ma~~aGa~l~~m 236 (588)
T 2wdq_A 217 INTGDGVGMAIRAGVPVQDM 236 (588)
T ss_dssp TCCCHHHHHHHHTTCCEECT
T ss_pred CchHHHHHHHHHcCCCEeCh
Confidence 57788888864 88876653
No 374
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.19 E-value=0.15 Score=54.88 Aligned_cols=25 Identities=24% Similarity=0.472 Sum_probs=22.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+.|.||+|+||||+.+.++..+.
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4689999999999999999998764
No 375
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase, dehydogenase, steroid catabolism; HET: FAD; 1.60A {Rhodococcus jostii} PDB: 4at2_A*
Probab=93.90 E-value=0.083 Score=64.71 Aligned_cols=93 Identities=15% Similarity=0.130 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcccCeeEEec-ccceEEEe-CCeEEEEEeCCCc---EEEcc-eEEEecccCCCceeEeccc---ccCCCC
Q psy13354 809 YKQAIRFYLENQLNLYLFQE-EVDDLIIK-TNKILGVVTKIGI---KFFSK-TVILTTGTFLNGKIHIGLK---SYSAGR 879 (1342)
Q Consensus 809 y~~~~~~~~~~~~~~~i~~~-~v~~l~~~-~~~~~gv~~~~g~---~~~~~-~vii~tGtfl~g~~~~g~~---~~~~g~ 879 (1342)
+.+.+.+.+++. |++|+.+ +|++|+.+ +++|+||++.++. ++.|+ .||||||.|-.-.=.+-.. .+....
T Consensus 204 l~~~L~~~~~~~-Gv~i~~~t~v~~L~~~~~g~v~GV~~~~~g~~~~i~A~k~VVlAtGG~~~n~~m~~~~~p~~~~~~~ 282 (510)
T 4at0_A 204 LMKPLVETAEKL-GVRAEYDMRVQTLVTDDTGRVVGIVAKQYGKEVAVRARRGVVLATGSFAYNDKMIEAHAPRLIGRPG 282 (510)
T ss_dssp HHHHHHHHHHHT-TCEEECSEEEEEEEECTTCCEEEEEEEETTEEEEEEEEEEEEECCCCCTTCHHHHHHHCGGGTTCBC
T ss_pred HHHHHHHHHHHc-CCEEEecCEeEEEEECCCCcEEEEEEEECCcEEEEEeCCeEEEeCCChhhCHHHHHHhCccccCCCC
Confidence 334444445443 8999766 79999998 7899999876543 59995 9999999553210000000 011113
Q ss_pred CCCcchHHHHHHHHH-cCCCcccc
Q psy13354 880 FGDFSTTSLAKRLKE-LQLSHGRL 902 (1342)
Q Consensus 880 ~g~~~s~~l~~~l~~-~g~~~~~~ 902 (1342)
.|...++|.+..+.. .|..+..+
T Consensus 283 ~~~~~~tGdGi~ma~~~Ga~~~~m 306 (510)
T 4at0_A 283 AAIEEHDGRSILMAQALGADLAHM 306 (510)
T ss_dssp CSCTTCCCHHHHHHHTTTBCEECT
T ss_pred CCCCCCCHHHHHHHHHhCcCeecc
Confidence 455567788888864 78776543
No 376
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=93.88 E-value=0.17 Score=52.95 Aligned_cols=128 Identities=13% Similarity=0.068 Sum_probs=69.1
Q ss_pred EEEEEccCcccHHHHHHHHHHHhccCCCCCCCCcccCCC-CCCcchhhhccCCCccEEEEccC----CCc---CHHHHHH
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPC-GKCSVCVKIDNGCFMDYIEMDAA----STR---GINEMAQ 486 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~~~~~~~~~~~~~~c-~~~~~~~~~~~~~~~d~~~i~~~----~~~---~~~~i~~ 486 (1342)
.+++|+.+|.||||+|-.++-.....+.... ....... ..+.....+... ..++..+... ... .....+.
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~-~vQF~Kg~~~~gE~~~l~~L-~v~~~~~g~gf~~~~~~~~~~~~~a~~ 107 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVG-VVQFIKGTWPNGERNLLEPH-GVEFQVMATGFTWETQNREADTAACMA 107 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEE-EEESSCCSSCCHHHHHHGGG-TCEEEECCTTCCCCGGGHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEE-EEEeeCCCCCccHHHHHHhC-CcEEEEcccccccCCCCcHHHHHHHHH
Confidence 4788899999999999999887664432110 0000000 000000111111 1222222110 000 0122344
Q ss_pred HHHHHhhcCccCCceEEEeccCc------cCCHHHHHHHHHhhcCCCCcEEEEEEeCCCCCChHHHhccE
Q psy13354 487 LLEQTIYAPINARYKIYVIDEVH------MLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550 (1342)
Q Consensus 487 ii~~~~~~p~~~~~rvviIDE~~------~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~~~kl~~~L~sR~ 550 (1342)
.++.+...-..+++.+||+||+. .++. +.+++++.+-|+..-+|++.+... +.|....
T Consensus 108 ~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~---~ev~~~l~~Rp~~~~vIlTGr~ap---~~l~e~A 171 (196)
T 1g5t_A 108 VWQHGKRMLADPLLDMVVLDELTYMVAYDYLPL---EEVISALNARPGHQTVIITGRGCH---RDILDLA 171 (196)
T ss_dssp HHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCH---HHHHHHHHTSCTTCEEEEECSSCC---HHHHHHC
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccccCCCCCH---HHHHHHHHhCcCCCEEEEECCCCc---HHHHHhC
Confidence 44444444445678999999984 3444 468888888888888999988764 4444444
No 377
>3jsk_A Cypbp37 protein; octameric thiazole synthase, biosynthetic protein; HET: AHZ; 2.70A {Neurospora crassa}
Probab=93.70 E-value=0.14 Score=58.78 Aligned_cols=73 Identities=29% Similarity=0.339 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHcccCeeEEec-ccceEEEeC-----------------C--eEEEEEeC--------------CCcEEE
Q psy13354 807 ILYKQAIRFYLENQLNLYLFQE-EVDDLIIKT-----------------N--KILGVVTK--------------IGIKFF 852 (1342)
Q Consensus 807 ~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~-----------------~--~~~gv~~~--------------~g~~~~ 852 (1342)
..+.+.+.+.+..++|++++++ .|++|+.++ + +|.||++. ++.+|.
T Consensus 160 ~d~~~~L~~~a~~~~gV~i~~~~~V~dLi~~~d~~~~~~~~~~g~~~~~g~~rV~GVv~~~~~v~~~g~~~~~~d~~~i~ 239 (344)
T 3jsk_A 160 ALFTSTVLSKVLQRPNVKLFNATTVEDLITRKHHAESSSSSDDGEAEDEAKVRIAGVVTNWTLVSMHHDDQSAMDPNTIN 239 (344)
T ss_dssp HHHHHHHHHHHHTCTTEEEEETEEEEEEEEEEC----------------CCEEEEEEEEEEHHHHTTSSSSSCCBCEEEE
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCcccccccccccccccCCCceEeEEEeeeeeeeccCCcccccCceEEE
Confidence 4555666777777899999877 699999887 3 89999873 234799
Q ss_pred cceEEEecccCCCceeEecccccCCCCCCCcc-hHHHHHHHHHcCCC
Q psy13354 853 SKTVILTTGTFLNGKIHIGLKSYSAGRFGDFS-TTSLAKRLKELQLS 898 (1342)
Q Consensus 853 ~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~-s~~l~~~l~~~g~~ 898 (1342)
|+.||+||| +.+. ...+...|.++|..
T Consensus 240 Ak~VV~ATG-------------------~~s~v~~~~~~~l~~~~~~ 267 (344)
T 3jsk_A 240 APVIISTTG-------------------HDGPFGAFSVKRLVSMKQM 267 (344)
T ss_dssp CSEEEECCC-------------------SSSSSSCHHHHHHHHTTSS
T ss_pred cCEEEECCC-------------------CCchhhHHHHHHHhhcCcc
Confidence 999999999 4444 44667777777774
No 378
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=93.66 E-value=0.23 Score=50.46 Aligned_cols=24 Identities=33% Similarity=0.548 Sum_probs=21.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+ +.++
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g 25 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG 25 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC
Confidence 35899999999999999999 7665
No 379
>2e4g_A Tryptophan halogenase; flavin-binding, rebeccamycin biosynthesis, biosynthetic protein, flavoprotein; HET: TRP; 2.08A {Lechevalieria aerocolonigenes} PDB: 2o9z_A 2oa1_A* 2oal_A* 2oam_A
Probab=93.49 E-value=0.084 Score=65.29 Aligned_cols=60 Identities=18% Similarity=0.232 Sum_probs=54.0
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEecccceEEEe-CCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~-~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.++..|+++++.++|+++..+ ++.+.+|.+.+|+++.||.||+|||
T Consensus 189 ~~~~~~~l~~~L~~~~~~~~Gv~i~~~~V~~i~~~~~g~~~~v~~~~G~~i~ad~vI~A~G 249 (550)
T 2e4g_A 189 WHFDAHLVADFLRRFATEKLGVRHVEDRVEHVQRDANGNIESVRTATGRVFDADLFVDCSG 249 (550)
T ss_dssp EEECHHHHHHHHHHHHHHHSCCEEEECCEEEEEECTTSCEEEEEETTSCEEECSEEEECCG
T ss_pred eEEcHHHHHHHHHHHHHhcCCcEEEECeEeEEEEcCCCCEEEEEECCCCEEECCEEEECCC
Confidence 47899999999999998878999988899999875 4678899999998999999999999
No 380
>1jnr_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 1.60A {Archaeoglobus fulgidus dsm 4304} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1jnz_A* 2fjb_A* 2fja_A* 2fjd_A* 2fje_A*
Probab=93.23 E-value=0.12 Score=65.02 Aligned_cols=86 Identities=16% Similarity=0.110 Sum_probs=58.7
Q ss_pred HHHHHHHHcccCe-eEEec-ccceEEEeCC---eEEEEEe---CCCc--EEEcceEEEecccCCCceeEecccccC-C-C
Q psy13354 811 QAIRFYLENQLNL-YLFQE-EVDDLIIKTN---KILGVVT---KIGI--KFFSKTVILTTGTFLNGKIHIGLKSYS-A-G 878 (1342)
Q Consensus 811 ~~~~~~~~~~~~~-~i~~~-~v~~l~~~~~---~~~gv~~---~~g~--~~~~~~vii~tGtfl~g~~~~g~~~~~-~-g 878 (1342)
+.+.+.+++.+|+ +|+.+ .|.+|+.+++ +|.||+. .+|. .+.|+.||+|||-|-+ .+.+ + |
T Consensus 155 ~~l~~~~~~~~gv~~i~~~~~v~~L~~~~~~~g~v~Gv~~~~~~~g~~~~i~A~~VVlAtGG~~~-------~y~~~~~~ 227 (643)
T 1jnr_A 155 PIIAEAAKMAVGEENIYERVFIFELLKDNNDPNAVAGAVGFSVREPKFYVFKAKAVILATGGATL-------LFRPRSTG 227 (643)
T ss_dssp HHHHHHHHHHHCGGGEECSEEEEEEEECTTCTTBEEEEEEEESSSSCEEEEECSEEEECCCCBCS-------SSCCSCCS
T ss_pred HHHHHHHHhcCCCcEEEecCEEEEEEEcCCccceeEEEEEEEecCCcEEEEEcCEEEECCCcccc-------cccCcccc
Confidence 3444445545699 89776 7999999887 9999975 5665 5999999999994322 1212 1 1
Q ss_pred -----CCCCcchHHHHHHHHH-cCCCccccc
Q psy13354 879 -----RFGDFSTTSLAKRLKE-LQLSHGRLK 903 (1342)
Q Consensus 879 -----~~g~~~s~~l~~~l~~-~g~~~~~~~ 903 (1342)
..+...++|.+..++. +|..+..+.
T Consensus 228 ~~~~~~~~~~~~tGdG~~mA~~aGa~l~~me 258 (643)
T 1jnr_A 228 EAAGRTWYAIFDTGSGYYMGLKAGAMLTQFE 258 (643)
T ss_dssp GGGGCCSSCTTCBSHHHHHHHHHTCCEESTT
T ss_pred cccccccCCCCCccHHHHHHHHhCCccCCch
Confidence 1234557888888864 888776543
No 381
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=93.17 E-value=0.22 Score=52.27 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=22.6
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
...++++||.|+||||.+..+++.+.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~ 33 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAK 33 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 45789999999999999888888774
No 382
>2gjc_A Thiazole biosynthetic enzyme, mitochondrial; glutathione reductase type II family, thiazole synthase, mitochondria DNA repair; HET: AHZ; 1.82A {Saccharomyces cerevisiae} PDB: 3fpz_A*
Probab=92.96 E-value=0.17 Score=57.76 Aligned_cols=74 Identities=23% Similarity=0.275 Sum_probs=53.4
Q ss_pred CcccccchhccCCCCcccccchhhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEe---C-C--eEEEEEeC------
Q psy13354 780 DKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIK---T-N--KILGVVTK------ 846 (1342)
Q Consensus 780 d~~~~~~~~ln~~~g~a~~~~r~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~---~-~--~~~gv~~~------ 846 (1342)
+..+++|+- .|+..+.. +...|...+.+.+...||++++.+ +|++|+.+ + + +|.||++.
T Consensus 127 ~~~Gv~~~~----~g~~~~~~----~~~~~~~~L~~~a~~~~GV~i~~~~~V~~Ll~~~~~~~g~~rV~GVvv~~~~v~~ 198 (326)
T 2gjc_A 127 QELEIPYED----EGDYVVVK----HAALFISTVLSKVLQLPNVKLFNATCVEDLVTRPPTEKGEVTVAGVVTNWTLVTQ 198 (326)
T ss_dssp HHTTCCCEE----CSSEEEES----CHHHHHHHHHHHHHTSTTEEEETTEEEEEEEECCCC-----CEEEEEEEEHHHHT
T ss_pred HhhCccccc----CCCeEEEc----chHHHHHHHHHHHHHhcCcEEEecceeeeeeecccccCCCcEEEEEEecceeecc
Confidence 344555542 25555543 335677777777888899999876 79999998 3 5 89999874
Q ss_pred --------CCcEEEc---------------ceEEEecc
Q psy13354 847 --------IGIKFFS---------------KTVILTTG 861 (1342)
Q Consensus 847 --------~g~~~~~---------------~~vii~tG 861 (1342)
++..+.| +.||.|||
T Consensus 199 ~g~~~~~~d~~~I~A~G~~~~~~~~~~~~~~~VV~ATG 236 (326)
T 2gjc_A 199 AHGTQCCMDPNVIELAGYKNDGTRDLSQKHGVILSTTG 236 (326)
T ss_dssp C---CCCCCCEEEEESCCCSSSCCCSSTTCCEEEECCC
T ss_pred cccceeccCceEEEEeeccccccccccccCCEEEECcC
Confidence 3357999 99999999
No 383
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=92.89 E-value=0.24 Score=54.75 Aligned_cols=26 Identities=46% Similarity=0.598 Sum_probs=23.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.|+||+||||+++.+++.+.
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~ 29 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILS 29 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 35689999999999999999999864
No 384
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=92.68 E-value=0.14 Score=53.51 Aligned_cols=27 Identities=15% Similarity=0.113 Sum_probs=22.6
Q ss_pred CCcEEEEEccCcccHH-HHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKT-TISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT-~la~~iak~L~ 438 (1342)
.+..+++|||.|+||| ++.+++.+...
T Consensus 19 ~g~l~fiyG~MgsGKTt~Ll~~i~n~~~ 46 (195)
T 1w4r_A 19 RGQIQVILGPMFSGKSTELMRRVRRFQI 46 (195)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3567999999999999 88888887765
No 385
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=92.44 E-value=0.15 Score=70.62 Aligned_cols=26 Identities=19% Similarity=0.203 Sum_probs=22.9
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|+||||+|||++|..++.+..
T Consensus 1427 g~~vll~GppGtGKT~LA~ala~ea~ 1452 (2050)
T 3cmu_A 1427 GRIVEIYGPESSGKTTLTLQVIAAAQ 1452 (2050)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35799999999999999999988764
No 386
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=92.37 E-value=0.8 Score=47.61 Aligned_cols=24 Identities=38% Similarity=0.564 Sum_probs=22.0
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+.|+|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLE 25 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999984
No 387
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.35 E-value=0.31 Score=56.30 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=22.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++++||||+|||+++..++..+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~ 86 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQ 86 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999987764
No 388
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=92.28 E-value=0.075 Score=54.78 Aligned_cols=26 Identities=27% Similarity=0.434 Sum_probs=23.7
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|+|++|+||||+++.+++.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 35689999999999999999999986
No 389
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=92.07 E-value=0.18 Score=58.80 Aligned_cols=58 Identities=24% Similarity=0.285 Sum_probs=50.1
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|...|.+.+.+.+++ .+++++.+ +|++|..+++++.||.+.+| .+.||.||+|||
T Consensus 144 ~~~~~~~l~~~l~~~~~~-~Gv~i~~~~~v~~i~~~~~~v~gv~~~~g-~i~a~~VV~A~G 202 (382)
T 1y56_B 144 GKADPFEATTAFAVKAKE-YGAKLLEYTEVKGFLIENNEIKGVKTNKG-IIKTGIVVNATN 202 (382)
T ss_dssp CEECHHHHHHHHHHHHHH-TTCEEECSCCEEEEEESSSBEEEEEETTE-EEECSEEEECCG
T ss_pred eeECHHHHHHHHHHHHHH-CCCEEECCceEEEEEEECCEEEEEEECCc-EEECCEEEECcc
Confidence 477888888888887765 58999776 79999988899999999888 799999999999
No 390
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=92.02 E-value=0.28 Score=52.10 Aligned_cols=27 Identities=11% Similarity=-0.054 Sum_probs=22.6
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
...+++||+-|+||||.+...+.....
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~ 54 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQF 54 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHH
Confidence 357899999999999998888877653
No 391
>2pyx_A Tryptophan halogenase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative biosynthetic protein; HET: MSE TLA PG4; 1.50A {Shewanella frigidimarina}
Probab=91.99 E-value=0.27 Score=60.34 Aligned_cols=60 Identities=17% Similarity=0.197 Sum_probs=53.2
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEecccceEEEeC-CeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKT-NKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~-~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.++...+++++.++|+++..++ +.+.+|.+.+|.++.||.||.|+|
T Consensus 170 ~~~~r~~l~~~L~~~a~~~~Gv~i~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~AdG 230 (526)
T 2pyx_A 170 YHLNAAKFSQLLTEHCTQKLGVTHIRDHVSQIINNQHGDIEKLITKQNGEISGQLFIDCTG 230 (526)
T ss_dssp EEECHHHHHHHHHHHHHHTSCCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECSG
T ss_pred EEEcHHHHHHHHHHHHHhcCCCEEEEeEEEEEEecCCCcEEEEEECCCCEEEcCEEEECCC
Confidence 588999999999999887679999888999998764 567899999988899999999999
No 392
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=91.82 E-value=0.4 Score=52.71 Aligned_cols=25 Identities=24% Similarity=0.223 Sum_probs=22.9
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.+++.||+|+||||+++.+++.++.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~ 27 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGW 27 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCC
Confidence 5799999999999999999999874
No 393
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=91.81 E-value=0.95 Score=48.04 Aligned_cols=24 Identities=21% Similarity=0.315 Sum_probs=21.9
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|+|++|+||||+++.+++.++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3dl0_A 3 LVLMGLPGAGKGTQGERIVEKYGI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHSSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998863
No 394
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=91.79 E-value=0.67 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.117 Sum_probs=20.7
Q ss_pred cEEEEEccCcccHHHHHHHHHH
Q psy13354 414 HAYLFTGTRGVGKTTISRILAK 435 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak 435 (1342)
..++++||+|+|||+++..++.
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~ 42 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGL 42 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999997
No 395
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=91.77 E-value=0.15 Score=60.70 Aligned_cols=27 Identities=19% Similarity=0.142 Sum_probs=23.8
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+..++++|++|+||||+++.+++.++
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcC
Confidence 356799999999999999999998775
No 396
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=91.77 E-value=2.1 Score=52.13 Aligned_cols=68 Identities=18% Similarity=0.177 Sum_probs=49.6
Q ss_pred ceEEEeccCccC----CHHHHHHHHHhhcCC-CCcEEEEEEeCCCC--CChHHHhccE-EEEEEcCCCHHHHHHHH
Q psy13354 500 YKIYVIDEVHML----THHAFNAMLKTLEEP-PKYIKFILATTEPQ--KIPITVLSRC-IQFNLKKMLHHDIVNNL 567 (1342)
Q Consensus 500 ~rvviIDE~~~L----~~~~~~~Ll~~Le~p-~~~~vlIl~t~~~~--kl~~~L~sR~-~~i~~~~l~~~el~~~l 567 (1342)
+-+|+|||++.+ .++..+.|.++.... .-.+.+|++|.++. .+...+++.+ ..+.|..-+..+...++
T Consensus 344 ~ivvVIDE~~~L~~~~~~~~~~~L~~Iar~GRa~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~IL 419 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVGKKVEELIARIAQKARAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTIL 419 (574)
T ss_dssp EEEEEESCCTTHHHHTCHHHHHHHHHHHHHCTTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHH
T ss_pred cEEEEEeCHHHHhhhhhHHHHHHHHHHHHHHhhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhc
Confidence 348999999966 344445555555443 45788899998887 6778899888 77888888888877665
No 397
>1rp0_A ARA6, thiazole biosynthetic enzyme; protein ligand complex, biosynthetic protein; HET: AHZ HTO; 1.60A {Arabidopsis thaliana} SCOP: c.3.1.6
Probab=91.69 E-value=0.49 Score=52.87 Aligned_cols=56 Identities=32% Similarity=0.425 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeC---------CC-----cEEEcceEEEecc
Q psy13354 806 RILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTK---------IG-----IKFFSKTVILTTG 861 (1342)
Q Consensus 806 ~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~---------~g-----~~~~~~~vii~tG 861 (1342)
...+...+.+.+...++++++.+ +|++|..+++++.||.+. +| ..+.||.||+|||
T Consensus 118 ~~~~~~~l~~~~~~~~gv~i~~~~~V~~i~~~~~~v~gv~~~~~~~~~~~~~g~~g~~~~i~ad~VV~AtG 188 (284)
T 1rp0_A 118 AALFTSTIMSKLLARPNVKLFNAVAAEDLIVKGNRVGGVVTNWALVAQNHHTQSCMDPNVMEAKIVVSSCG 188 (284)
T ss_dssp HHHHHHHHHHHHHTSTTEEEEETEEEEEEEEETTEEEEEEEEEHHHHTCTTTSSCCCCEEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCCEEEcCcEEEEEEecCCeEEEEEEeccccccccCccccCceEEEECCEEEECCC
Confidence 34444455555666689999776 799999999999999874 32 5799999999999
No 398
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=91.48 E-value=0.41 Score=56.72 Aligned_cols=27 Identities=30% Similarity=0.365 Sum_probs=24.4
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..+++.|++|+||||++..++..+..
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA~~l~~ 123 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLAYFYKK 123 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 568999999999999999999998864
No 399
>2weu_A Tryptophan 5-halogenase; regioselectivity, antifungal protei; HET: TRP; 1.70A {Streptomyces rugosporus} PDB: 2wet_A* 2wes_A*
Probab=91.42 E-value=0.24 Score=60.42 Aligned_cols=59 Identities=17% Similarity=0.053 Sum_probs=51.9
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEecccceEEEe-CCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~-~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.++. .+++++.++|+++..+ ++.+.+|.+.+|+++.||.||.|+|
T Consensus 168 ~~~~~~~l~~~L~~~a~~-~gv~~~~~~v~~i~~~~~~~~~~v~~~~g~~~~ad~vV~A~G 227 (511)
T 2weu_A 168 YHFDADEVARYLSEYAIA-RGVRHVVDDVQHVGQDERGWISGVHTKQHGEISGDLFVDCTG 227 (511)
T ss_dssp EEECHHHHHHHHHHHHHH-TTCEEEECCEEEEEECTTSCEEEEEESSSCEEECSEEEECCG
T ss_pred EEEcHHHHHHHHHHHHHH-CCCEEEECeEeEEEEcCCCCEEEEEECCCCEEEcCEEEECCC
Confidence 478999999999888876 7899988899999874 5678899999998999999999999
No 400
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=91.36 E-value=0.79 Score=54.32 Aligned_cols=27 Identities=33% Similarity=0.439 Sum_probs=24.7
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..+++.|++|+||||++..++..+..
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA~~l~~ 126 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLARYFQK 126 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEECcCCCCHHHHHHHHHHHHHH
Confidence 578999999999999999999998864
No 401
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=91.25 E-value=0.12 Score=53.58 Aligned_cols=27 Identities=30% Similarity=0.361 Sum_probs=24.1
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
...++|+|++|+||||+++.+++.++.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~ 31 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKR 31 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 346899999999999999999999863
No 402
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A {Sulfolobus tokodaii}
Probab=91.06 E-value=0.34 Score=58.51 Aligned_cols=82 Identities=13% Similarity=0.119 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHcccCeeEEecc-cceEEEeCCeEEEEEeC-CCcEEEcceEEEecccCCCceeEecccccCCCCCCCcch
Q psy13354 808 LYKQAIRFYLENQLNLYLFQEE-VDDLIIKTNKILGVVTK-IGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFST 885 (1342)
Q Consensus 808 ~y~~~~~~~~~~~~~~~i~~~~-v~~l~~~~~~~~gv~~~-~g~~~~~~~vii~tGtfl~g~~~~g~~~~~~g~~g~~~s 885 (1342)
.+.+.+.+.+ ..+|++++.+. | +|+.++++|.||.+. .+..+.|+.||+||| |.+....-.++....
T Consensus 120 ~l~~~L~~~~-~~~gv~i~~~~~v-~l~~~~~~v~Gv~v~~~~g~~~a~~VVlAtG---------g~~~~~~~~~~~~~~ 188 (472)
T 2e5v_A 120 EIFNFLLKLA-REEGIPIIEDRLV-EIRVKDGKVTGFVTEKRGLVEDVDKLVLATG---------GYSYLYEYSSTQSTN 188 (472)
T ss_dssp HHHHHHHHHH-HHTTCCEECCCEE-EEEEETTEEEEEEETTTEEECCCSEEEECCC---------CCGGGSSSBSSCTTC
T ss_pred HHHHHHHHHH-HhCCCEEEECcEE-EEEEeCCEEEEEEEEeCCCeEEeeeEEECCC---------CCcccCccccCCCCC
Confidence 3344444444 35799998875 9 999999999999764 233588999999999 444332222233344
Q ss_pred HHHHHHHH-HcCCCcc
Q psy13354 886 TSLAKRLK-ELQLSHG 900 (1342)
Q Consensus 886 ~~l~~~l~-~~g~~~~ 900 (1342)
++.+..+. +.|..+.
T Consensus 189 tGdgi~~a~~aGa~~~ 204 (472)
T 2e5v_A 189 IGDGMAIAFKAGTILA 204 (472)
T ss_dssp SCHHHHHHHHTTCCEE
T ss_pred chHHHHHHHHcCCCEe
Confidence 55555543 4666543
No 403
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=91.05 E-value=0.12 Score=52.58 Aligned_cols=25 Identities=24% Similarity=0.272 Sum_probs=22.8
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|.|++|+||||+++.+++.++.
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~ 27 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKY 27 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5799999999999999999999863
No 404
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=90.92 E-value=0.1 Score=57.47 Aligned_cols=28 Identities=43% Similarity=0.541 Sum_probs=24.8
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+..++|.|++|+||||+++.+++.+.
T Consensus 30 ~~~~~i~l~G~~GsGKSTla~~L~~~l~ 57 (253)
T 2p5t_B 30 KQPIAILLGGQSGAGKTTIHRIKQKEFQ 57 (253)
T ss_dssp SSCEEEEEESCGGGTTHHHHHHHHHHTT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4456799999999999999999999875
No 405
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=90.73 E-value=1.2 Score=49.96 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=23.6
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+.|.|+.|+||||++..++..+.
T Consensus 105 g~vi~lvG~~GsGKTTl~~~LA~~l~ 130 (296)
T 2px0_A 105 SKYIVLFGSTGAGKTTTLAKLAAISM 130 (296)
T ss_dssp SSEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999998875
No 406
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=90.72 E-value=0.51 Score=54.59 Aligned_cols=25 Identities=20% Similarity=0.230 Sum_probs=22.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++++|+||+|||+++..++..+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~ 88 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQ 88 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999988764
No 407
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=90.63 E-value=0.52 Score=50.39 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=22.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+.|.||+|+||||+++.++..+.
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~ 50 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQ 50 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999998654
No 408
>2x3n_A Probable FAD-dependent monooxygenase; oxidoreductase; HET: FAD; 1.75A {Pseudomonas aeruginosa}
Probab=90.49 E-value=0.29 Score=57.58 Aligned_cols=60 Identities=8% Similarity=0.101 Sum_probs=52.4
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEE-EEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKIL-GVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~-gv~~~~g~~~~~~~vii~tG 861 (1342)
..++|..+.+.+.+.+++.|+++|+.+ +|+++..+++.+. .|.+.+|+++.||.||.|+|
T Consensus 102 ~~~~r~~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~v~g~v~~~~g~~~~ad~vV~AdG 163 (399)
T 2x3n_A 102 ILMPCESLRRLVLEKIDGEATVEMLFETRIEAVQRDERHAIDQVRLNDGRVLRPRVVVGADG 163 (399)
T ss_dssp EECCHHHHHHHHHHHHTTCTTEEEECSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECCC
T ss_pred ccccHHHHHHHHHHHhhhcCCcEEEcCCEEEEEEEcCCceEEEEEECCCCEEECCEEEECCC
Confidence 468899999999999988889999765 7999988877775 68888999999999999999
No 409
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=90.45 E-value=0.58 Score=53.99 Aligned_cols=38 Identities=16% Similarity=0.009 Sum_probs=27.9
Q ss_pred HHHHHHHHcCCC--CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 401 KSLINALDKKRL--HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 401 ~~L~~~l~~~~~--~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..|-..+..|.+ ...++|+||||+|||+++..++..+.
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~ 86 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQ 86 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344444442332 35789999999999999999998864
No 410
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=90.42 E-value=1 Score=48.64 Aligned_cols=31 Identities=23% Similarity=0.443 Sum_probs=21.8
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHH
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~ia 434 (1342)
+.+...+..| ..+++.||.|+|||++...+.
T Consensus 67 ~~~i~~i~~g---~~~~i~g~TGsGKTt~~~~~~ 97 (235)
T 3llm_A 67 SEILEAISQN---SVVIIRGATGCGKTTQVPQFI 97 (235)
T ss_dssp HHHHHHHHHC---SEEEEECCTTSSHHHHHHHHH
T ss_pred HHHHHHHhcC---CEEEEEeCCCCCcHHhHHHHH
Confidence 3444455555 468999999999998665554
No 411
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal membrane precursor, like 2 geranylgeranylglyceryl phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius} PDB: 3atq_A*
Probab=90.29 E-value=0.35 Score=58.02 Aligned_cols=59 Identities=19% Similarity=0.237 Sum_probs=50.2
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeC---CCc--EEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTK---IGI--KFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~---~g~--~~~~~~vii~tG 861 (1342)
.+++|..+.+.+.+.+.+ .+++|+.+ +|+++..+++.+.||.+. +|+ ++.||.||.|+|
T Consensus 95 ~~i~r~~l~~~L~~~a~~-~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~G~~~~~~ad~VV~AdG 159 (453)
T 3atr_A 95 FELNAPLYNQRVLKEAQD-RGVEIWDLTTAMKPIFEDGYVKGAVLFNRRTNEELTVYSKVVVEATG 159 (453)
T ss_dssp EEECHHHHHHHHHHHHHH-TTCEEESSEEEEEEEEETTEEEEEEEEETTTTEEEEEECSEEEECCG
T ss_pred EEEcHHHHHHHHHHHHHH-cCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCceEEEEcCEEEECcC
Confidence 467888888888887776 78999776 799999999999998875 676 799999999999
No 412
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=90.18 E-value=0.47 Score=53.37 Aligned_cols=24 Identities=29% Similarity=0.296 Sum_probs=21.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHh
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
..++|.|+||+||||+++.+++.+
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHHhC
Confidence 468999999999999999999864
No 413
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=90.16 E-value=0.54 Score=53.15 Aligned_cols=27 Identities=33% Similarity=0.370 Sum_probs=24.1
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..++|.|++|+||||++..++..+..
T Consensus 104 ~~vi~ivG~~GsGKTTl~~~LA~~l~~ 130 (306)
T 1vma_A 104 PFVIMVVGVNGTGKTTSCGKLAKMFVD 130 (306)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCChHHHHHHHHHHHHHh
Confidence 457999999999999999999998863
No 414
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1, geranylgeranyl bacteriochlorophyll reductase- like FIXC homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma acidophilum dsm 1728} PDB: 3oz2_A*
Probab=90.15 E-value=0.3 Score=57.12 Aligned_cols=59 Identities=14% Similarity=0.160 Sum_probs=51.0
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEe---CCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVT---KIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~---~~g~~~~~~~vii~tG 861 (1342)
..+||..|.+.+.+.+++ .|++|+.+ +|+++..+++.+.||.+ .++..+.||.||.|+|
T Consensus 97 ~~~~~~~l~~~L~~~~~~-~gv~i~~~~~v~~i~~~~~~v~gv~~~~~~~~~~~~a~~vV~A~G 159 (397)
T 3cgv_A 97 YVLERDKFDKHLAALAAK-AGADVWVKSPALGVIKENGKVAGAKIRHNNEIVDVRAKMVIAADG 159 (397)
T ss_dssp EEECHHHHHHHHHHHHHH-HTCEEESSCCEEEEEEETTEEEEEEEEETTEEEEEEEEEEEECCC
T ss_pred EEEeHHHHHHHHHHHHHh-CCCEEEECCEEEEEEEeCCEEEEEEEEECCeEEEEEcCEEEECCC
Confidence 368899998888888876 78999766 79999999999999988 4566899999999999
No 415
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=90.13 E-value=0.64 Score=49.87 Aligned_cols=37 Identities=14% Similarity=0.170 Sum_probs=26.2
Q ss_pred CCceEEEeccCccCCHHHHHHHHHhhcCCCCcEEEEEEeCC
Q psy13354 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538 (1342)
Q Consensus 498 ~~~rvviIDE~~~L~~~~~~~Ll~~Le~p~~~~vlIl~t~~ 538 (1342)
.+..+|+|||++++.. ...+.+.+.+. .+.+|++.-+
T Consensus 89 ~~~dvViIDEaQF~~~--v~el~~~l~~~--gi~VI~~GL~ 125 (234)
T 2orv_A 89 LGVAVIGIDEGQFFPD--IVEFCEAMANA--GKTVIVAALD 125 (234)
T ss_dssp TTCSEEEESSGGGCTT--HHHHHHHHHHT--TCEEEEECCS
T ss_pred ccCCEEEEEchhhhhh--HHHHHHHHHhC--CCEEEEEecc
Confidence 3467999999999974 66777887763 4455666433
No 416
>4a5l_A Thioredoxin reductase; oxidoreductase, redox metabolism, oxidative stress; HET: NDP FAD; 1.66A {Entamoeba histolytica} PDB: 4a65_A*
Probab=90.13 E-value=0.19 Score=56.73 Aligned_cols=41 Identities=24% Similarity=0.332 Sum_probs=34.4
Q ss_pred cccccCcCCeeecccccCchh--HHHHHHHHHHHHHHHHHHhCC
Q psy13354 1062 SLETKQIHGLFFAGQINGTTG--YEEAASQGLLAGLNAALFSQD 1103 (1342)
Q Consensus 1062 tlesk~~~gL~~aGqi~g~~g--y~eA~~~G~~Ag~na~~~~~~ 1103 (1342)
.|+| .+||+|.|||+.+..+ ...|++||.+|++||.++++.
T Consensus 271 ~~~T-s~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~~~~yL~~ 313 (314)
T 4a5l_A 271 GPKT-SVDGVFACGDVCDRVYRQAIVAAGSGCMAALSCEKWLQT 313 (314)
T ss_dssp TTBC-SSTTEEECSTTTCSSCCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcc-CCCCEEEEEeccCCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence 6788 7999999999987544 346999999999999988753
No 417
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=90.11 E-value=0.18 Score=52.55 Aligned_cols=26 Identities=38% Similarity=0.473 Sum_probs=23.7
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.|++|+||||+++.+++.++
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~ 30 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLR 30 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 45789999999999999999999886
No 418
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=90.06 E-value=1.2 Score=51.71 Aligned_cols=25 Identities=20% Similarity=0.185 Sum_probs=22.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|+||+|||+++..++..+.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~ 99 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQ 99 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHH
Confidence 5789999999999999999988764
No 419
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=89.95 E-value=0.17 Score=52.48 Aligned_cols=25 Identities=36% Similarity=0.497 Sum_probs=23.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|++|+||||+++.+++.++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999999999999986
No 420
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=89.90 E-value=0.17 Score=52.32 Aligned_cols=25 Identities=48% Similarity=0.595 Sum_probs=23.0
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|++|+||||+++.+++.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~ 36 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSG 36 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999986
No 421
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=89.86 E-value=0.18 Score=57.91 Aligned_cols=38 Identities=26% Similarity=0.402 Sum_probs=29.2
Q ss_pred HHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 401 ~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+.+...+..|+.+ .++|.|++|+||||+++.+++.+..
T Consensus 13 ~~l~~~i~~g~~~-~i~l~G~~G~GKTTl~~~la~~l~~ 50 (359)
T 2ga8_A 13 QLLDNRIEDNYRV-CVILVGSPGSGKSTIAEELCQIINE 50 (359)
T ss_dssp HHHHHTTTTCSCE-EEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCCee-EEEEECCCCCcHHHHHHHHHHHhCC
Confidence 3344444566654 4789999999999999999999874
No 422
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=89.84 E-value=0.17 Score=51.70 Aligned_cols=25 Identities=44% Similarity=0.662 Sum_probs=22.8
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+.|+|++|+||||+++.++..+.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~ 29 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLN 29 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999876
No 423
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=89.82 E-value=0.18 Score=51.79 Aligned_cols=23 Identities=30% Similarity=0.401 Sum_probs=21.1
Q ss_pred CcEEEEEccCcccHHHHHHHHHH
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAK 435 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak 435 (1342)
+..++|.|+||+||||+++.+++
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHh
Confidence 35689999999999999999998
No 424
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=89.78 E-value=0.15 Score=57.35 Aligned_cols=27 Identities=26% Similarity=0.417 Sum_probs=24.0
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+..++|.||+|+||||+++.+++.+.
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~ 58 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQ 58 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 456899999999999999999999873
No 425
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=89.77 E-value=0.16 Score=52.54 Aligned_cols=26 Identities=42% Similarity=0.579 Sum_probs=23.4
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+.++|+|++|+||||+++.+++.++.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~ 28 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGV 28 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTC
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCC
Confidence 35899999999999999999999873
No 426
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=89.75 E-value=0.22 Score=52.46 Aligned_cols=29 Identities=34% Similarity=0.363 Sum_probs=25.0
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..+..++|+|++|+||||+++.+++.++.
T Consensus 18 ~~~~~I~l~G~~GsGKST~a~~La~~l~~ 46 (201)
T 2cdn_A 18 GSHMRVLLLGPPGAGKGTQAVKLAEKLGI 46 (201)
T ss_dssp CSCCEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 34457999999999999999999998863
No 427
>2aqj_A Tryptophan halogenase, pRNA; flavin-dependent halogenase, helical bundle, sandwiched sheets, structural genomics; HET: TRP FAD; 1.80A {Pseudomonas fluorescens} PDB: 2apg_A* 2ar8_A* 2ard_A* 2jkc_A*
Probab=89.71 E-value=0.38 Score=59.13 Aligned_cols=60 Identities=18% Similarity=0.175 Sum_probs=52.4
Q ss_pred hhhhhHHHHHHHHHHHHHcccCeeEEecccceEEEe-CCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 801 RAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIK-TNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 801 r~q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~-~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
..++||..+.+.+.+.+++ .+++++.++|+++..+ ++.+.+|.+.+|+++.||.||+|+|
T Consensus 159 ~~~i~~~~l~~~L~~~a~~-~gv~~~~~~v~~i~~~~~g~~~~v~~~~g~~i~ad~vV~A~G 219 (538)
T 2aqj_A 159 AWHFDAHLVADFLKRWAVE-RGVNRVVDEVVDVRLNNRGYISNLLTKEGRTLEADLFIDCSG 219 (538)
T ss_dssp EEEECHHHHHHHHHHHHHH-TTCEEEECCEEEEEECTTSCEEEEEETTSCEECCSEEEECCG
T ss_pred cEEEeHHHHHHHHHHHHHH-CCCEEEEeeEeEEEEcCCCcEEEEEECCCcEEEeCEEEECCC
Confidence 3578999999999998876 6899988899999875 4568899999998999999999999
No 428
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=89.71 E-value=0.18 Score=51.91 Aligned_cols=24 Identities=46% Similarity=0.690 Sum_probs=22.4
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|.|++|+||||+++.+++.++
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~ 29 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLD 29 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcC
Confidence 489999999999999999999986
No 429
>3e1t_A Halogenase; flavoprotein; HET: FAD; 2.05A {Chondromyces crocatus}
Probab=89.67 E-value=0.42 Score=58.41 Aligned_cols=59 Identities=19% Similarity=0.299 Sum_probs=51.1
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeC--CCc--EEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTK--IGI--KFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~--~g~--~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.+++ +|++|+.+ +|+++..+++++.||.+. +|+ ++.||.||.|||
T Consensus 106 ~~v~r~~l~~~L~~~a~~-~Gv~i~~~~~V~~v~~~~~~v~gv~~~~~dG~~~~i~ad~VI~AdG 169 (512)
T 3e1t_A 106 YQVERARFDDMLLRNSER-KGVDVRERHEVIDVLFEGERAVGVRYRNTEGVELMAHARFIVDASG 169 (512)
T ss_dssp EBCCHHHHHHHHHHHHHH-TTCEEESSCEEEEEEEETTEEEEEEEECSSSCEEEEEEEEEEECCC
T ss_pred eEecHHHHHHHHHHHHHh-CCCEEEcCCEEEEEEEECCEEEEEEEEeCCCCEEEEEcCEEEECCC
Confidence 378999999998888876 78999877 799999999999998764 474 799999999999
No 430
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=89.63 E-value=0.19 Score=51.15 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=23.2
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|+|++|+||||+++.+++.++.
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~ 33 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKL 33 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5899999999999999999999873
No 431
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=89.56 E-value=0.52 Score=58.67 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=34.6
Q ss_pred ccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 394 IGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 394 vGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..|..++..+.+.+.+++ ..+++.++.|+|||.++-.++..+..
T Consensus 181 ~~Q~~ai~~~~~~~~~~~--~~~ll~~~TGsGKT~~~~~~~~~l~~ 224 (590)
T 3h1t_A 181 YYQQIAINRAVQSVLQGK--KRSLITMATGTGKTVVAFQISWKLWS 224 (590)
T ss_dssp HHHHHHHHHHHHHHHTTC--SEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCC--CceEEEecCCCChHHHHHHHHHHHHh
Confidence 347888888888887765 34689999999999998888877653
No 432
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=89.52 E-value=0.21 Score=52.67 Aligned_cols=26 Identities=38% Similarity=0.576 Sum_probs=23.6
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|.|++|+||||+++.+++.++.
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~ 51 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNV 51 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 46899999999999999999999863
No 433
>1ryi_A Glycine oxidase; flavoprotein, protein-inhibitor complex, oxidoreductase; HET: FAD; 1.80A {Bacillus subtilis} SCOP: c.3.1.2 d.16.1.3 PDB: 3if9_A* 1ng4_A* 1ng3_A*
Probab=89.48 E-value=0.34 Score=56.38 Aligned_cols=57 Identities=16% Similarity=0.202 Sum_probs=48.0
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|...|.+.+.+.+++ .+++++.+ +|++|..+++.+ +|.+.+| .+.||.||+|||
T Consensus 159 ~~~~~~~~~~~l~~~~~~-~g~~i~~~~~v~~i~~~~~~~-~v~~~~g-~~~a~~vV~A~G 216 (382)
T 1ryi_A 159 VHVEPYFVCKAYVKAAKM-LGAEIFEHTPVLHVERDGEAL-FIKTPSG-DVWANHVVVASG 216 (382)
T ss_dssp CBCCHHHHHHHHHHHHHH-TTCEEETTCCCCEEECSSSSE-EEEETTE-EEEEEEEEECCG
T ss_pred eEEcHHHHHHHHHHHHHH-CCCEEEcCCcEEEEEEECCEE-EEEcCCc-eEEcCEEEECCC
Confidence 467888888888887775 47999776 799998888877 8989877 799999999999
No 434
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=89.46 E-value=0.34 Score=52.89 Aligned_cols=28 Identities=36% Similarity=0.438 Sum_probs=24.8
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+..++|+|++|+||||+++.+++.++
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3456799999999999999999999886
No 435
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=89.40 E-value=0.24 Score=51.48 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=24.2
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+..++|+|++|+||||+++.+++.++
T Consensus 5 ~~~~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 5 KPNVVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHC
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345789999999999999999999886
No 436
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=89.36 E-value=0.21 Score=51.93 Aligned_cols=26 Identities=19% Similarity=0.210 Sum_probs=23.5
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.|++|+||||+++.+++.++
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~ 28 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYG 28 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC
Confidence 35689999999999999999999886
No 437
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=89.35 E-value=0.19 Score=52.30 Aligned_cols=24 Identities=33% Similarity=0.494 Sum_probs=22.6
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|.|++|+||||+++.+++.+.
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 489999999999999999999987
No 438
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme, electron transfer, folate-ME enzyme, oxidoreductase; HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia} PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B* 3ada_B*
Probab=89.34 E-value=0.41 Score=56.15 Aligned_cols=58 Identities=21% Similarity=0.213 Sum_probs=49.2
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|-..|.+.+.+.+++ .+++++.+ +|++|..+++++.+|.+.+| .+.||.||+|||
T Consensus 169 ~~~~~~~~~~~l~~~~~~-~g~~i~~~~~v~~i~~~~~~~~~v~~~~g-~~~a~~vV~a~G 227 (405)
T 2gag_B 169 GIAKHDHVAWAFARKANE-MGVDIIQNCEVTGFIKDGEKVTGVKTTRG-TIHAGKVALAGA 227 (405)
T ss_dssp BBCCHHHHHHHHHHHHHH-TTCEEECSCCEEEEEESSSBEEEEEETTC-CEEEEEEEECCG
T ss_pred ccCCHHHHHHHHHHHHHH-CCCEEEcCCeEEEEEEeCCEEEEEEeCCc-eEECCEEEECCc
Confidence 467777788878777765 58999774 79999988888999999888 699999999999
No 439
>3nyc_A D-arginine dehydrogenase; FAD, imino-arginine, oxidoreductas; HET: FAD IAR; 1.06A {Pseudomonas aeruginosa} PDB: 3nye_A* 3nyf_A* 3sm8_A*
Probab=89.28 E-value=0.46 Score=55.10 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=47.6
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|...|-+.+.+.+++. +++|+.+ +|++|..+++. .+|.|.+| .+.||.||+|||
T Consensus 149 ~~~~~~~~~~~l~~~a~~~-Gv~i~~~~~V~~i~~~~~~-~~V~t~~g-~i~a~~VV~A~G 206 (381)
T 3nyc_A 149 ADIDTDALHQGYLRGIRRN-QGQVLCNHEALEIRRVDGA-WEVRCDAG-SYRAAVLVNAAG 206 (381)
T ss_dssp EEECHHHHHHHHHHHHHHT-TCEEESSCCCCEEEEETTE-EEEECSSE-EEEESEEEECCG
T ss_pred ceECHHHHHHHHHHHHHHC-CCEEEcCCEEEEEEEeCCe-EEEEeCCC-EEEcCEEEECCC
Confidence 3577778888888877754 7999765 89999988887 68999888 799999999999
No 440
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=89.13 E-value=1.6 Score=50.51 Aligned_cols=47 Identities=26% Similarity=0.229 Sum_probs=32.3
Q ss_pred CCCccccccchhhHHHHHHHHHcCCCCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 387 PSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 387 p~~f~~lvGq~~~~~~L~~~l~~~~~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+.+++++.-.+ ++. +.+... ...+++.||.|+||||+.+.++..+..
T Consensus 103 ~~~l~~lg~~~-~l~---~l~~~~--~g~i~I~GptGSGKTTlL~~l~g~~~~ 149 (356)
T 3jvv_A 103 VLTMEELGMGE-VFK---RVSDVP--RGLVLVTGPTGSGKSTTLAAMLDYLNN 149 (356)
T ss_dssp CCCTTTTTCCH-HHH---HHHHCS--SEEEEEECSTTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHcCChH-HHH---HHHhCC--CCEEEEECCCCCCHHHHHHHHHhcccC
Confidence 45677764432 333 333322 236899999999999999999998863
No 441
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=88.90 E-value=0.26 Score=52.83 Aligned_cols=28 Identities=21% Similarity=0.252 Sum_probs=24.7
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.+..++|.||||+||+|.|+.+++.++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~ 55 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHF 55 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3467899999999999999999999873
No 442
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=88.82 E-value=0.24 Score=51.32 Aligned_cols=25 Identities=40% Similarity=0.542 Sum_probs=22.9
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|++|+||||+++.+++.++
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4589999999999999999999886
No 443
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=88.80 E-value=0.25 Score=52.11 Aligned_cols=26 Identities=19% Similarity=0.423 Sum_probs=23.6
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..++|.|++|+||||+++.+++.++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34689999999999999999999986
No 444
>3fbs_A Oxidoreductase; structural genomics, PSI2, MCSG, protein STR initiative, midwest center for structural genomics; HET: FAD; 2.15A {Agrobacterium tumefaciens}
Probab=88.70 E-value=0.71 Score=51.31 Aligned_cols=58 Identities=16% Similarity=0.005 Sum_probs=50.0
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
..+...+..++.+.+...+++++++++|+++..+++. .-|.+.+|..+.+|.||+|||
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~v~~~~~~v~~i~~~~~~-~~v~~~~g~~~~~d~vviAtG 109 (297)
T 3fbs_A 52 GKAPGEIIAEARRQIERYPTIHWVEGRVTDAKGSFGE-FIVEIDGGRRETAGRLILAMG 109 (297)
T ss_dssp TCCHHHHHHHHHHHHTTCTTEEEEESCEEEEEEETTE-EEEEETTSCEEEEEEEEECCC
T ss_pred CCCHHHHHHHHHHHHHhcCCeEEEEeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECCC
Confidence 4566778888889998889999999999999877765 457888999999999999999
No 445
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=88.66 E-value=0.24 Score=51.76 Aligned_cols=25 Identities=24% Similarity=0.299 Sum_probs=23.3
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+++.++
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999986
No 446
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=88.63 E-value=3 Score=50.37 Aligned_cols=67 Identities=16% Similarity=0.160 Sum_probs=45.2
Q ss_pred EEEeccCccCCH----HHHHHHHHhhcCC-CCcEEEEEEeCCCC--CChHHHhccE-EEEEEcCCCHHHHHHHHH
Q psy13354 502 IYVIDEVHMLTH----HAFNAMLKTLEEP-PKYIKFILATTEPQ--KIPITVLSRC-IQFNLKKMLHHDIVNNLC 568 (1342)
Q Consensus 502 vviIDE~~~L~~----~~~~~Ll~~Le~p-~~~~vlIl~t~~~~--kl~~~L~sR~-~~i~~~~l~~~el~~~l~ 568 (1342)
+|+|||++.+-. +..+.|.++.... .-.+.+|++|.++. .+...+++.+ ..+.|.-.+..+...++.
T Consensus 300 vlvIDE~~~ll~~~~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 300 VVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp EEEEETHHHHHHHHHHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHS
T ss_pred EEEEeCHHHHHhhhhHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcC
Confidence 888999975532 2223333333332 23677889998887 4667788877 788898888888877653
No 447
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=88.59 E-value=0.18 Score=52.04 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=19.6
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|+|++|+||||+++.+++.++.
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~ 31 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPG 31 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTT
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999998863
No 448
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=88.56 E-value=0.24 Score=52.15 Aligned_cols=28 Identities=29% Similarity=0.362 Sum_probs=24.9
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+..+.|.|++|+||||+++.++..+.
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~ 50 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLY 50 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999999985
No 449
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=88.53 E-value=0.25 Score=51.49 Aligned_cols=25 Identities=20% Similarity=0.291 Sum_probs=23.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+++.++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~ 34 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYG 34 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999886
No 450
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=88.50 E-value=0.24 Score=50.53 Aligned_cols=24 Identities=42% Similarity=0.714 Sum_probs=22.5
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|+|++|+||||+++.+++.++
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg 27 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALG 27 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 489999999999999999999986
No 451
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=88.35 E-value=0.29 Score=52.43 Aligned_cols=26 Identities=23% Similarity=0.333 Sum_probs=23.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|.|++|+||||+++.+++.++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 46899999999999999999999863
No 452
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=88.35 E-value=0.27 Score=51.95 Aligned_cols=26 Identities=23% Similarity=0.424 Sum_probs=23.7
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|.|++|+||||+++.+++.+..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 46899999999999999999999874
No 453
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=88.13 E-value=1.4 Score=49.53 Aligned_cols=38 Identities=11% Similarity=0.030 Sum_probs=27.8
Q ss_pred HHHHHHHH----cCCCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 401 KSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 401 ~~L~~~l~----~~~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..|-..+. .|-.+..++++||||+|||+++..++....
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~ 53 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYM 53 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34555565 454445689999999999999888776654
No 454
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=88.03 E-value=0.28 Score=67.26 Aligned_cols=24 Identities=21% Similarity=0.231 Sum_probs=21.8
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+|+|||||||||++|+.++.+-.
T Consensus 1084 ~~l~~G~~g~GKT~la~~~~~~~~ 1107 (1706)
T 3cmw_A 1084 IVEIYGPESSGKTTLTLQVIAAAQ 1107 (1706)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCChHHHHHHHHHHhh
Confidence 499999999999999999998764
No 455
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=88.00 E-value=0.97 Score=47.62 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=19.7
Q ss_pred EEEEEccCcccHHHHHHHHHHHh
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
.+++.+|+|+|||.++-.++..+
T Consensus 50 ~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 50 NIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CEEEECSCHHHHHHHHHHHHHHH
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999988877654
No 456
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=87.91 E-value=0.3 Score=50.73 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=22.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHH-hc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKC-LN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~-L~ 438 (1342)
..++|+|++|+||||+++.+++. ++
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g 36 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDG 36 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46899999999999999999998 44
No 457
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=87.85 E-value=0.71 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.343 Sum_probs=20.4
Q ss_pred ceEEEeccCccCCHHHHHHHHHhh
Q psy13354 500 YKIYVIDEVHMLTHHAFNAMLKTL 523 (1342)
Q Consensus 500 ~rvviIDE~~~L~~~~~~~Ll~~L 523 (1342)
..+|||||+.++.......++..+
T Consensus 235 ~d~liiDE~sm~~~~~l~~l~~~~ 258 (446)
T 3vkw_A 235 FKRLFIDEGLMLHTGCVNFLVEMS 258 (446)
T ss_dssp CSEEEEETGGGSCHHHHHHHHHHT
T ss_pred CCEEEEeCcccCCHHHHHHHHHhC
Confidence 579999999999988888777765
No 458
>3axb_A Putative oxidoreductase; dinucleotide-binding fold; HET: FAD; 1.92A {Aeropyrum pernix} PDB: 3vqr_A*
Probab=87.78 E-value=0.53 Score=56.23 Aligned_cols=58 Identities=9% Similarity=0.051 Sum_probs=47.7
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEe-cccceEEE---------------eCCeEEEEEeCCCcEE--EcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQ-EEVDDLII---------------KTNKILGVVTKIGIKF--FSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~-~~v~~l~~---------------~~~~~~gv~~~~g~~~--~~~~vii~tG 861 (1342)
.++|...+.+.+.+.+++ .+++++. .+|++|.. +++++.+|.+.+| .+ .||.||+|||
T Consensus 176 ~~~~~~~l~~~L~~~~~~-~Gv~i~~~~~V~~i~~~~~~~~~~~~~~~~~~~~~v~~V~t~~g-~i~~~Ad~VV~AtG 251 (448)
T 3axb_A 176 GFLDAEKVVDYYYRRASG-AGVEFIFGRRVVGVELKPRVELGIEGEPLPWQEARASAAVLSDG-TRVEVGEKLVVAAG 251 (448)
T ss_dssp EECCHHHHHHHHHHHHHH-TTCEEEESCCEEEEEEEESSCCCCTTSSCTTSCEEEEEEEETTS-CEEEEEEEEEECCG
T ss_pred eEEcHHHHHHHHHHHHHh-CCCEEEcCCeEEEEEecccccccccccccccCCCceEEEEeCCC-EEeecCCEEEECCC
Confidence 356777788777777765 4799977 48999988 6778889999888 57 9999999999
No 459
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=87.55 E-value=0.29 Score=52.09 Aligned_cols=24 Identities=21% Similarity=0.317 Sum_probs=22.0
Q ss_pred EEEEccCcccHHHHHHHHHHHhcc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
++|+|++|+||||+++.+++.++.
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~~~ 26 (216)
T 3fb4_A 3 IVLMGLPGAGKGTQAEQIIEKYEI 26 (216)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCC
Confidence 789999999999999999998863
No 460
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=87.54 E-value=0.32 Score=49.31 Aligned_cols=24 Identities=29% Similarity=0.492 Sum_probs=22.3
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|+|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~ 25 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN 25 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999886
No 461
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=87.46 E-value=0.35 Score=50.91 Aligned_cols=26 Identities=31% Similarity=0.367 Sum_probs=23.4
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+.|.|++|+||||+++.++..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 45789999999999999999999875
No 462
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=87.32 E-value=0.31 Score=51.57 Aligned_cols=27 Identities=30% Similarity=0.437 Sum_probs=24.4
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..++|+|++|+||||+++.+++.+..
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~ 36 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKN 36 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999999874
No 463
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=87.25 E-value=0.29 Score=52.42 Aligned_cols=26 Identities=15% Similarity=0.248 Sum_probs=23.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
..++|.|++|+||||+++.+++.++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 35899999999999999999999873
No 464
>3dme_A Conserved exported protein; structural genomics, PSI-2, PROT structure initiative, northeast structural genomics consort NESG; HET: FAD TLA; 1.70A {Bordetella pertussis}
Probab=87.23 E-value=0.59 Score=53.81 Aligned_cols=58 Identities=12% Similarity=-0.037 Sum_probs=46.8
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCC--cEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIG--IKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g--~~~~~~~vii~tG 861 (1342)
++|...+.+.+.+.+++ .+++++.+ +|++|..+++.+.+|.+.+| ..+.||.||+|||
T Consensus 146 ~~~~~~~~~~l~~~~~~-~Gv~i~~~~~v~~i~~~~~~~~~v~~~~g~~~~~~a~~VV~A~G 206 (369)
T 3dme_A 146 IVDSHALMLAYQGDAES-DGAQLVFHTPLIAGRVRPEGGFELDFGGAEPMTLSCRVLINAAG 206 (369)
T ss_dssp EECHHHHHHHHHHHHHH-TTCEEECSCCEEEEEECTTSSEEEEECTTSCEEEEEEEEEECCG
T ss_pred EECHHHHHHHHHHHHHH-CCCEEECCCEEEEEEEcCCceEEEEECCCceeEEEeCEEEECCC
Confidence 57777777777777765 47999754 89999988766456899888 4799999999999
No 465
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=87.17 E-value=0.41 Score=48.97 Aligned_cols=26 Identities=35% Similarity=0.705 Sum_probs=23.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
...++|.|++|+||||+++.++..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 35689999999999999999998875
No 466
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=87.16 E-value=25 Score=40.23 Aligned_cols=28 Identities=36% Similarity=0.336 Sum_probs=24.3
Q ss_pred CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 411 RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 411 ~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.-...+.|+|++|+||||++..++..+.
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~ 104 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLI 104 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3456789999999999999999998875
No 467
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=87.15 E-value=0.32 Score=52.35 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=23.1
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+++.++
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~ 32 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFE 32 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999886
No 468
>3i3l_A Alkylhalidase CMLS; flavin-dependent halogenase, chloramphenicol biosynthesis, halogenation reaction, structural genomics; HET: FAD; 2.20A {Streptomyces venezuelae}
Probab=87.12 E-value=0.5 Score=58.70 Aligned_cols=60 Identities=18% Similarity=0.174 Sum_probs=51.9
Q ss_pred hhhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeC-CC--cEEEcceEEEecc
Q psy13354 801 RAQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTK-IG--IKFFSKTVILTTG 861 (1342)
Q Consensus 801 r~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~-~g--~~~~~~~vii~tG 861 (1342)
-.++||..|.+.+.+.++. .|++++.+ +|+++..+++.+.+|.+. +| ..+.||.||.|||
T Consensus 122 ~~~v~r~~l~~~L~~~a~~-~Gv~i~~g~~V~~v~~~~g~~~~V~~~~~G~~~~i~AdlVV~AdG 185 (591)
T 3i3l_A 122 AVQVKREEFDKLLLDEARS-RGITVHEETPVTDVDLSDPDRVVLTVRRGGESVTVESDFVIDAGG 185 (591)
T ss_dssp EEECCHHHHHHHHHHHHHH-TTCEEETTCCEEEEECCSTTCEEEEEEETTEEEEEEESEEEECCG
T ss_pred eEEEcHHHHHHHHHHHHHh-CCCEEEeCCEEEEEEEcCCCEEEEEEecCCceEEEEcCEEEECCC
Confidence 3478999999998888876 79999877 899998887888899987 66 5799999999999
No 469
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=87.10 E-value=0.35 Score=51.40 Aligned_cols=25 Identities=36% Similarity=0.454 Sum_probs=22.5
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|.||||+||+|.|+.+++.++.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCC
Confidence 3788999999999999999999873
No 470
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=87.00 E-value=0.34 Score=50.94 Aligned_cols=25 Identities=28% Similarity=0.321 Sum_probs=23.0
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|+|++|+||||+++.+++.++
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g 40 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYS 40 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4689999999999999999999876
No 471
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=86.94 E-value=0.36 Score=50.64 Aligned_cols=24 Identities=42% Similarity=0.497 Sum_probs=22.4
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+.|.|++|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~ 25 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLG 25 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHC
T ss_pred EEEEECCCccCHHHHHHHHHHhcC
Confidence 478999999999999999999986
No 472
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=86.93 E-value=0.4 Score=51.83 Aligned_cols=25 Identities=32% Similarity=0.343 Sum_probs=23.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||+++.+++.++
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~ 41 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFC 41 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4689999999999999999999986
No 473
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=86.61 E-value=0.4 Score=50.81 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=24.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..++|+|++|+||||+++.+++.+..
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 356899999999999999999999864
No 474
>3ps9_A TRNA 5-methylaminomethyl-2-thiouridine biosynthes bifunctional protein MNMC; rossmann fold, oxidase, methyl transferase, FAD; HET: FAD SAM; 2.54A {Escherichia coli} PDB: 3awi_A*
Probab=86.31 E-value=0.91 Score=57.45 Aligned_cols=57 Identities=9% Similarity=0.040 Sum_probs=46.2
Q ss_pred hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 803 QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 803 q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
++|...|-+.+.+.++. .+++|+.+ +|++|..+++.+ +|.+.+|..+.|+.||+|||
T Consensus 413 ~v~p~~l~~aL~~~a~~-~Gv~i~~~t~V~~l~~~~~~v-~V~t~~G~~i~Ad~VVlAtG 470 (676)
T 3ps9_A 413 WLCPAELTRNVLELAQQ-QGLQIYYQYQLQNFSRKDDCW-LLNFAGDQQATHSVVVLANG 470 (676)
T ss_dssp EECHHHHHHHHHHHHHH-TTCEEEESCCEEEEEEETTEE-EEEETTSCEEEESEEEECCG
T ss_pred eeCHHHHHHHHHHHHHh-CCCEEEeCCeeeEEEEeCCeE-EEEECCCCEEECCEEEECCC
Confidence 45556666666666665 47999666 899999998886 89998988999999999999
No 475
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=86.31 E-value=0.34 Score=51.16 Aligned_cols=25 Identities=24% Similarity=0.384 Sum_probs=22.4
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.||+|+||||+++.+++.+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4589999999999999999999873
No 476
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=86.16 E-value=0.5 Score=48.99 Aligned_cols=27 Identities=41% Similarity=0.418 Sum_probs=24.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..++|.|++|+||||+++.+++.+..
T Consensus 13 ~~~i~l~G~~GsGKsT~~~~L~~~l~~ 39 (186)
T 2yvu_A 13 GIVVWLTGLPGSGKTTIATRLADLLQK 39 (186)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 457899999999999999999999863
No 477
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=86.14 E-value=0.51 Score=50.01 Aligned_cols=40 Identities=28% Similarity=0.464 Sum_probs=29.2
Q ss_pred hHHHHHHHHHc-CCCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 399 ISKSLINALDK-KRLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 399 ~~~~L~~~l~~-~~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+++.|.+.+.. ...+..+.|.||+|+||||+++.++..+.
T Consensus 7 ~~~~~~~~~~~~~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 7 LCQGVLERLDPRQPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp HHHHHHHHSCTTCCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 33444444432 23445789999999999999999999886
No 478
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=86.13 E-value=0.36 Score=50.19 Aligned_cols=24 Identities=38% Similarity=0.567 Sum_probs=21.5
Q ss_pred cEEEEEccCcccHHHHHHHHHHHh
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
..+.|.||+|+||||+++.++..+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~ 33 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLP 33 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCS
T ss_pred eEEEEECCCCCCHHHHHHHHHhcc
Confidence 568999999999999999998753
No 479
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Probab=85.94 E-value=0.97 Score=50.80 Aligned_cols=56 Identities=18% Similarity=0.228 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHcccCeeEEecccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 806 RILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 806 ~~~y~~~~~~~~~~~~~~~i~~~~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
...+.+.+.+.+...+++.+....|..+...+...+-|.+.+|.++.+|+||||||
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~~a~~liiATG 114 (304)
T 4fk1_A 59 PEEFKEIGLNEVMKYPSVHYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATG 114 (304)
T ss_dssp HHHHHHHHHHHHTTSTTEEEEECCEEEEEECTTSCEEEEETTCCEEEEEEEEECCC
T ss_pred HHHHHHHHHHHHHhcCCEEEEeeEEEEeeecCCCcEEEEECCCCEEEeCEEEEccC
Confidence 34555666777788899999999888887666555568899999999999999999
No 480
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=85.94 E-value=0.39 Score=51.35 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=22.9
Q ss_pred EEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
.++|.|++|+||||+++.+++.++.
T Consensus 7 ~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 7 NLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCc
Confidence 5899999999999999999999863
No 481
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F flavoprotein, oxidoreductase; HET: FAD; 2.20A {Rhodopseudomonas palustris}
Probab=85.91 E-value=1.3 Score=52.09 Aligned_cols=52 Identities=12% Similarity=0.163 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 809 YKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 809 y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.+.+++.++ ..+++++.+ +|+++.-+++++.+|.+.+|+++.||.||+|||
T Consensus 186 ~~~~l~~~l~-~~GV~i~~~~~v~~i~~~~~~v~~V~~~dG~~i~aD~Vv~a~G 238 (404)
T 3fg2_P 186 ISSYFHDRHS-GAGIRMHYGVRATEIAAEGDRVTGVVLSDGNTLPCDLVVVGVG 238 (404)
T ss_dssp HHHHHHHHHH-HTTCEEECSCCEEEEEEETTEEEEEEETTSCEEECSEEEECCC
T ss_pred HHHHHHHHHH-hCCcEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECcC
Confidence 3445555554 378999766 799998888999999999999999999999999
No 482
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=85.85 E-value=0.58 Score=49.65 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.2
Q ss_pred CCceEEEeccCccCCHHHHHHHHHhhc
Q psy13354 498 ARYKIYVIDEVHMLTHHAFNAMLKTLE 524 (1342)
Q Consensus 498 ~~~rvviIDE~~~L~~~~~~~Ll~~Le 524 (1342)
.+..+|+|||+++|+.+..+.|.++.+
T Consensus 100 ~~~dvV~IDEaQFf~~~~v~~l~~la~ 126 (219)
T 3e2i_A 100 TNVDVIGIDEVQFFDDEIVSIVEKLSA 126 (219)
T ss_dssp TTCSEEEECCGGGSCTHHHHHHHHHHH
T ss_pred cCCCEEEEechhcCCHHHHHHHHHHHH
Confidence 456799999999999888888877764
No 483
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase; glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A {Novosphingobium aromaticivorans}
Probab=85.85 E-value=1.6 Score=51.43 Aligned_cols=52 Identities=17% Similarity=0.099 Sum_probs=42.8
Q ss_pred HHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 809 YKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 809 y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.+.+++.+++ .+++++.+ .|+++.-+++++.+|.+.+|+++.||.||+|||
T Consensus 196 ~~~~l~~~l~~-~GV~i~~~~~v~~i~~~~~~v~~v~l~dG~~i~aD~Vv~a~G 248 (415)
T 3lxd_A 196 LSEFYQAEHRA-HGVDLRTGAAMDCIEGDGTKVTGVRMQDGSVIPADIVIVGIG 248 (415)
T ss_dssp HHHHHHHHHHH-TTCEEEETCCEEEEEESSSBEEEEEESSSCEEECSEEEECSC
T ss_pred HHHHHHHHHHh-CCCEEEECCEEEEEEecCCcEEEEEeCCCCEEEcCEEEECCC
Confidence 34455555543 68999755 799998878899999999999999999999999
No 484
>4gcm_A TRXR, thioredoxin reductase; FAD/NAD-linked reductases, PYR redox 2 family, structural GE joint center for structural genomics, JCSG; HET: MSE FAD NAP EPE; 1.80A {Staphylococcus aureus subsp}
Probab=85.81 E-value=0.58 Score=52.81 Aligned_cols=43 Identities=26% Similarity=0.432 Sum_probs=34.4
Q ss_pred cccccccCcCCeeecccccCch--hHHHHHHHHHHHHHHHHHHhCC
Q psy13354 1060 KSSLETKQIHGLFFAGQINGTT--GYEEAASQGLLAGLNAALFSQD 1103 (1342)
Q Consensus 1060 ~~tlesk~~~gL~~aGqi~g~~--gy~eA~~~G~~Ag~na~~~~~~ 1103 (1342)
+.+|+| .+||+|.|||+.+.. =-..|..||.+|+.|+++++.+
T Consensus 263 d~~~~T-s~pgIyA~GDv~~~~~~~~~~A~~~G~~AA~~i~~~L~~ 307 (312)
T 4gcm_A 263 KDDMTT-SVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEH 307 (312)
T ss_dssp CTTSBC-SSTTEEECSTTBSCSCCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCcc-CCCCEEEEeecCCCcchHHHHHHHHHHHHHHHHHHHHHh
Confidence 347888 899999999998632 2346999999999999988753
No 485
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=85.70 E-value=0.4 Score=51.01 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=21.8
Q ss_pred EEEEccCcccHHHHHHHHHHHhc
Q psy13354 416 YLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
++|.|++|+||||+++.+++.++
T Consensus 3 I~l~G~~GsGKsT~a~~L~~~~g 25 (214)
T 1e4v_A 3 IILLGAPVAGKGTQAQFIMEKYG 25 (214)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 78999999999999999999886
No 486
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=85.70 E-value=0.45 Score=49.39 Aligned_cols=24 Identities=38% Similarity=0.515 Sum_probs=22.0
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+.|+|++|+||||+++.+++.+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~ 25 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLK 25 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999884
No 487
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=85.65 E-value=0.47 Score=51.76 Aligned_cols=27 Identities=22% Similarity=0.318 Sum_probs=24.1
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhcc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLNC 439 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~~ 439 (1342)
+..+.|.||+|+||||+++.+++.++.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~ 53 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGL 53 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457899999999999999999998863
No 488
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=85.53 E-value=0.43 Score=51.27 Aligned_cols=24 Identities=25% Similarity=0.379 Sum_probs=22.1
Q ss_pred EEEEEccCcccHHHHHHHHHHHhc
Q psy13354 415 AYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 415 ~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.++|.|++|+||||+++.+++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 378999999999999999999886
No 489
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A {Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2 d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Probab=85.52 E-value=0.99 Score=58.63 Aligned_cols=58 Identities=16% Similarity=0.080 Sum_probs=49.3
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
.++|...|-..+.+.+++ .+++|+.+ +|++|..+++++.+|.|.+| .+.||.||+|||
T Consensus 146 g~v~p~~l~~~L~~~a~~-~Gv~i~~~t~V~~i~~~~~~v~~V~t~~G-~i~Ad~VV~AaG 204 (830)
T 1pj5_A 146 GLASAARAVQLLIKRTES-AGVTYRGSTTVTGIEQSGGRVTGVQTADG-VIPADIVVSCAG 204 (830)
T ss_dssp EEECHHHHHHHHHHHHHH-TTCEEECSCCEEEEEEETTEEEEEEETTE-EEECSEEEECCG
T ss_pred ceEcHHHHHHHHHHHHHH-cCCEEECCceEEEEEEeCCEEEEEEECCc-EEECCEEEECCc
Confidence 367887888888777765 47999755 89999999999999999888 799999999999
No 490
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=85.34 E-value=0.53 Score=48.42 Aligned_cols=26 Identities=38% Similarity=0.469 Sum_probs=23.2
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
+..+.|+|++|+||||+++.++..+.
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~ 30 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLV 30 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45689999999999999999999873
No 491
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium, SGC, trans PF10_0345, protein transport; 1.85A {Plasmodium falciparum 3D7}
Probab=85.24 E-value=0.87 Score=54.70 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=39.5
Q ss_pred HHHHHHHHcccCeeEEec-ccceEEE-eCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 811 QAIRFYLENQLNLYLFQE-EVDDLII-KTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 811 ~~~~~~~~~~~~~~i~~~-~v~~l~~-~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
+.+.+.++.. |++|+.+ +|++|.+ ++|++.||++.+|+++.||.||.++|
T Consensus 260 ~aL~r~~~~~-Gg~i~l~t~V~~I~~d~~g~v~gV~~~~G~~i~Ad~VI~a~~ 311 (475)
T 3p1w_A 260 EGFSRMCAIN-GGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPS 311 (475)
T ss_dssp HHHHHHHHHC---CEESSCCEEEEEECTTSCEEEEEETTSCEEEEEEEEECGG
T ss_pred HHHHHHHHHc-CCEEEeCCeEEEEEEecCCeEEEEEECCCcEEECCEEEECCC
Confidence 4445555544 6777554 7999999 78999999999999999999999999
No 492
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=85.04 E-value=0.77 Score=48.70 Aligned_cols=27 Identities=26% Similarity=0.246 Sum_probs=24.2
Q ss_pred CCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 412 LHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 412 ~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
.+..++|.|++|+||||+++.+++.+.
T Consensus 24 ~~~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 24 RGLTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhc
Confidence 346789999999999999999999886
No 493
>3nix_A Flavoprotein/dehydrogenase; structural genomics, PSI-2, NES protein structure initiative, northeast structural genomics consortium; HET: FAD; 2.60A {Cytophaga hutchinsonii}
Probab=85.03 E-value=1.2 Score=52.59 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=49.9
Q ss_pred hhhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCe-EEEEEeCCCc--EEEcceEEEecc
Q psy13354 802 AQVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNK-ILGVVTKIGI--KFFSKTVILTTG 861 (1342)
Q Consensus 802 ~q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~-~~gv~~~~g~--~~~~~~vii~tG 861 (1342)
.++||..|.+.+.+.+++. +++|+.+ +|+++..+++. +..|.+.+|+ ++.||.||+|||
T Consensus 101 ~~~~r~~~~~~L~~~a~~~-gv~i~~~~~v~~i~~~~~~~~v~v~~~~g~~~~~~a~~vV~A~G 163 (421)
T 3nix_A 101 WQVPRGNFDKTLADEAARQ-GVDVEYEVGVTDIKFFGTDSVTTIEDINGNKREIEARFIIDASG 163 (421)
T ss_dssp EECCHHHHHHHHHHHHHHH-TCEEECSEEEEEEEEETTEEEEEEEETTSCEEEEEEEEEEECCG
T ss_pred eEECHHHHHHHHHHHHHhC-CCEEEcCCEEEEEEEeCCEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence 4788999988888888765 8999877 79999988654 4677888998 799999999999
No 494
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=84.99 E-value=1.8 Score=51.29 Aligned_cols=25 Identities=36% Similarity=0.593 Sum_probs=22.7
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++|.|++|+||||++..++..+.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~ 124 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQ 124 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4789999999999999999998874
No 495
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=84.92 E-value=0.96 Score=47.57 Aligned_cols=41 Identities=20% Similarity=0.128 Sum_probs=30.4
Q ss_pred hhHHHHHHHHHcC--CCCcEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 398 HISKSLINALDKK--RLHHAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 398 ~~~~~L~~~l~~~--~~~~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..++.|.+.+... ..+..+.+.|++|+||||+++.++..+.
T Consensus 5 ~~~~~l~~~~~~~~~~~~~~i~i~G~~GsGKstl~~~l~~~~~ 47 (201)
T 1rz3_A 5 DRIDFLCKTILAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLR 47 (201)
T ss_dssp HHHHHHHHHHHTSCCSSSEEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3445555555432 3345789999999999999999999874
No 496
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=84.85 E-value=3.8 Score=45.34 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=18.6
Q ss_pred EEEEccCcccHHHHHHHHHHHh
Q psy13354 416 YLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 416 ~Ll~G~~G~GKT~la~~iak~L 437 (1342)
.++.+|.|+|||.++-.++...
T Consensus 131 ~ll~~~tGsGKT~~~~~~~~~~ 152 (282)
T 1rif_A 131 RILNLPTSAGRSLIQALLARYY 152 (282)
T ss_dssp EEECCCTTSCHHHHHHHHHHHH
T ss_pred eEEEcCCCCCcHHHHHHHHHHH
Confidence 4779999999999998777654
No 497
>2oln_A NIKD protein; flavoprotein, rossmann fold, oxidoreductase; HET: FAD; 1.15A {Streptomyces tendae} PDB: 2olo_A* 3hzl_A* 2q6u_A*
Probab=84.71 E-value=1.3 Score=51.70 Aligned_cols=63 Identities=17% Similarity=0.175 Sum_probs=46.4
Q ss_pred ccccchh-hhhHHHHHHHHHHHHHcccCeeEEec-ccceEEEeCCeEEEEEeCCCcEEEcceEEEecc
Q psy13354 796 AVRATRA-QVDRILYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861 (1342)
Q Consensus 796 a~~~~r~-q~d~~~y~~~~~~~~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~g~~~~~~~vii~tG 861 (1342)
++|.+.. ++|...+-+.+.+.+.. .+++|+.+ +|++|..+++.+. |.+.+| .+.|+.||+|||
T Consensus 141 ~~~~~~~g~~~~~~~~~~l~~~a~~-~Gv~i~~~~~V~~i~~~~~~v~-v~t~~g-~i~a~~VV~A~G 205 (397)
T 2oln_A 141 GFLQPDGGTIDVRGTLAALFTLAQA-AGATLRAGETVTELVPDADGVS-VTTDRG-TYRAGKVVLACG 205 (397)
T ss_dssp EEEETTCEEEEHHHHHHHHHHHHHH-TTCEEEESCCEEEEEEETTEEE-EEESSC-EEEEEEEEECCG
T ss_pred EEEcCCCCEEcHHHHHHHHHHHHHH-cCCEEECCCEEEEEEEcCCeEE-EEECCC-EEEcCEEEEcCC
Confidence 3444433 66776676666666654 47999765 7999998887764 777665 799999999999
No 498
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=84.67 E-value=1.4 Score=50.13 Aligned_cols=25 Identities=28% Similarity=0.347 Sum_probs=22.4
Q ss_pred CcEEEEEccCcccHHHHHHHHHHHh
Q psy13354 413 HHAYLFTGTRGVGKTTISRILAKCL 437 (1342)
Q Consensus 413 ~~~~Ll~G~~G~GKT~la~~iak~L 437 (1342)
...++|+|+||+|||+++..++...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 3579999999999999999999875
No 499
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold, alpha/beta structure, rossman 6-hydroxylated FAD, oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A {Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1 PDB: 1naa_A*
Probab=84.59 E-value=0.86 Score=56.09 Aligned_cols=45 Identities=27% Similarity=0.297 Sum_probs=37.7
Q ss_pred HHcccCeeEEec-ccceEEEeCCeEEEEEeCC---Cc--EE---EcceEEEecc
Q psy13354 817 LENQLNLYLFQE-EVDDLIIKTNKILGVVTKI---GI--KF---FSKTVILTTG 861 (1342)
Q Consensus 817 ~~~~~~~~i~~~-~v~~l~~~~~~~~gv~~~~---g~--~~---~~~~vii~tG 861 (1342)
+.+.+|++|+.+ .|++|+.+++++.||.+.+ |+ ++ .++.||||+|
T Consensus 205 ~~~~~~~~i~~~~~V~~i~~~~~~~~gV~~~~~~~g~~~~~~v~~~~~VIlaaG 258 (546)
T 1kdg_A 205 ALARPNFTFKTNVMVSNVVRNGSQILGVQTNDPTLGPNGFIPVTPKGRVILSAG 258 (546)
T ss_dssp HHTCTTEEEECSCCEEEEEEETTEEEEEEESCTTSSGGGEEEEEEEEEEEECSH
T ss_pred HhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEecCCCceeEEEEEeCCEEEEcCC
Confidence 345689999776 7999999999999999876 64 34 8999999999
No 500
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=84.54 E-value=0.54 Score=48.54 Aligned_cols=25 Identities=24% Similarity=0.425 Sum_probs=22.2
Q ss_pred cEEEEEccCcccHHHHHHHHHHHhc
Q psy13354 414 HAYLFTGTRGVGKTTISRILAKCLN 438 (1342)
Q Consensus 414 ~~~Ll~G~~G~GKT~la~~iak~L~ 438 (1342)
..+.|.||+|+||||+++.++..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998753
Done!