Your job contains 1 sequence.
>psy13354
MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP
GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS
LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY
IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL
MKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD
QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIR
LGSSAITTRGFSELEIIKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTG
TRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG
INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQ
KIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSL
TDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSI
VLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELEL
APDEYAGFTMTLLRMLVFQTLHNHLDYNNLKNSKDTKGNLIHAVLTVLDAMGGIMAIATD
KSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKI
LGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHG
RLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNI
IRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGIST
SLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGT
TGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAE
YRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGE
SERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQY
EGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVT
PAALTLLLIYLKSGFLKNFIKK
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy13354
(1342 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|P0A6U3 - symbol:mnmG "protein involved in a tRN... 1696 1.4e-174 1
UNIPROTKB|Q8E8A9 - symbol:mnmG "tRNA uridine 5-carboxymet... 1679 8.9e-173 1
TIGR_CMR|SO_4758 - symbol:SO_4758 "glucose-inhibited divi... 1679 8.9e-173 1
UNIPROTKB|Q87TS3 - symbol:mnmG "tRNA uridine 5-carboxymet... 1667 1.7e-171 1
UNIPROTKB|Q9KNG4 - symbol:mnmG "tRNA uridine 5-carboxymet... 1635 4.1e-168 1
TIGR_CMR|VC_2775 - symbol:VC_2775 "glucose inhibited divi... 1635 4.1e-168 1
UNIPROTKB|P94613 - symbol:mnmG "tRNA uridine 5-carboxymet... 1595 7.1e-164 1
TIGR_CMR|CBU_1924 - symbol:CBU_1924 "glucose inhibited di... 1595 7.1e-164 1
UNIPROTKB|Q47U38 - symbol:mnmG "tRNA uridine 5-carboxymet... 1563 1.7e-160 1
TIGR_CMR|CPS_5047 - symbol:CPS_5047 "glucose inhibited di... 1563 1.7e-160 1
UNIPROTKB|Q60CS5 - symbol:mnmG "tRNA uridine 5-carboxymet... 1557 7.5e-160 1
UNIPROTKB|Q746Q4 - symbol:mnmG "tRNA uridine 5-carboxymet... 1411 2.2e-144 1
TIGR_CMR|GSU_3464 - symbol:GSU_3464 "glucose inhibited di... 1411 2.2e-144 1
UNIPROTKB|Q3AG55 - symbol:mnmG "tRNA uridine 5-carboxymet... 1331 6.7e-136 1
TIGR_CMR|CHY_0007 - symbol:CHY_0007 "glucose inhibited di... 1331 6.7e-136 1
UNIPROTKB|Q5HTS6 - symbol:mnmG "tRNA uridine 5-carboxymet... 1226 8.9e-125 1
TIGR_CMR|CJE_1322 - symbol:CJE_1322 "glucose inhibited di... 1226 8.9e-125 1
UNIPROTKB|Q71VV1 - symbol:mnmG "tRNA uridine 5-carboxymet... 1214 1.7e-123 1
TAIR|locus:2060326 - symbol:AT2G13440 species:3702 "Arabi... 1213 2.1e-123 1
UNIPROTKB|Q5LWF3 - symbol:mnmG "tRNA uridine 5-carboxymet... 1201 4.0e-122 1
TIGR_CMR|SPO_0001 - symbol:SPO_0001 "glucose inhibited di... 1201 4.0e-122 1
UNIPROTKB|Q81JH3 - symbol:mnmG "tRNA uridine 5-carboxymet... 1179 8.5e-120 1
TIGR_CMR|BA_5733 - symbol:BA_5733 "glucose-inhibited divi... 1179 8.5e-120 1
TIGR_CMR|SO_3471 - symbol:SO_3471 "serine hydroxymethyltr... 1176 1.8e-119 1
TIGR_CMR|GSU_1607 - symbol:GSU_1607 "serine hydroxymethyl... 1172 4.7e-119 1
TIGR_CMR|CPS_2477 - symbol:CPS_2477 "serine hydroxymethyl... 1168 1.3e-118 1
UNIPROTKB|P0A825 - symbol:glyA species:83333 "Escherichia... 1165 2.6e-118 1
UNIPROTKB|Q9KTG1 - symbol:glyA1 "Serine hydroxymethyltran... 1161 6.9e-118 1
TIGR_CMR|VC_0941 - symbol:VC_0941 "serine hydroxymethyltr... 1161 6.9e-118 1
TIGR_CMR|CPS_4031 - symbol:CPS_4031 "serine hydroxymethyl... 1159 1.1e-117 1
UNIPROTKB|Q2GHA4 - symbol:mnmG "tRNA uridine 5-carboxymet... 1157 1.8e-117 1
TIGR_CMR|ECH_0359 - symbol:ECH_0359 "glucose inhibited di... 1157 1.8e-117 1
TIGR_CMR|CHY_2557 - symbol:CHY_2557 "serine hydroxymethyl... 1154 3.8e-117 1
UNIPROTKB|Q0BWA9 - symbol:mnmG "tRNA uridine 5-carboxymet... 1147 2.1e-116 1
TIGR_CMR|NSE_0218 - symbol:NSE_0218 "serine hydroxymethyl... 1142 7.1e-116 1
UNIPROTKB|Q2GD63 - symbol:mnmG "tRNA uridine 5-carboxymet... 1136 3.1e-115 1
TIGR_CMR|NSE_0707 - symbol:NSE_0707 "glucose inhibited di... 1136 3.1e-115 1
ASPGD|ASPL0000009022 - symbol:AN6577 species:162425 "Emer... 1133 6.4e-115 1
TIGR_CMR|ECH_0311 - symbol:ECH_0311 "serine hydroxymethyl... 1132 8.2e-115 1
TIGR_CMR|BA_5558 - symbol:BA_5558 "serine hydroxymethyltr... 1125 4.5e-114 1
TIGR_CMR|SPO_1572 - symbol:SPO_1572 "serine hydroxymethyl... 1125 4.5e-114 1
TIGR_CMR|SPO_2940 - symbol:SPO_2940 "serine hydroxymethyl... 1125 4.5e-114 1
DICTYBASE|DDB_G0289183 - symbol:DDB_G0289183 "Protein MTO... 975 6.1e-114 2
TIGR_CMR|CBU_1419 - symbol:CBU_1419 "serine hydroxymethyl... 1120 1.5e-113 1
TIGR_CMR|CPS_3844 - symbol:CPS_3844 "serine hydroxymethyl... 1111 1.4e-112 1
TIGR_CMR|APH_0224 - symbol:APH_0224 "pyridine nucleotide-... 1100 2.0e-111 1
TIGR_CMR|CPS_0728 - symbol:CPS_0728 "serine hydroxymethyl... 1095 6.8e-111 1
UNIPROTKB|Q9KMP4 - symbol:glyA2 "Serine hydroxymethyltran... 1083 1.3e-109 1
TIGR_CMR|VC_A0278 - symbol:VC_A0278 "serine hydroxymethyl... 1083 1.3e-109 1
TIGR_CMR|APH_0154 - symbol:APH_0154 "serine hydroxymethyl... 1076 7.0e-109 1
TIGR_CMR|DET_0436 - symbol:DET_0436 "Serine hydroxymethyl... 1065 1.0e-107 1
SGD|S000003205 - symbol:MTO1 "Mitochondrial protein" spec... 1065 1.0e-107 1
TIGR_CMR|CJE_0451 - symbol:CJE_0451 "serine hydroxymethyl... 1063 1.7e-107 1
UNIPROTKB|F1NVJ9 - symbol:MTO1 "Uncharacterized protein" ... 1055 1.2e-106 1
UNIPROTKB|F1RQG8 - symbol:MTO1 "Uncharacterized protein" ... 1019 1.2e-104 2
UNIPROTKB|Q1JQB6 - symbol:MTO1 "Uncharacterized protein" ... 1026 1.4e-103 1
UNIPROTKB|E2R8R6 - symbol:MTO1 "Uncharacterized protein" ... 1021 4.7e-103 1
UNIPROTKB|O53615 - symbol:glyA2 "Serine hydroxymethyltran... 1020 6.0e-103 1
CGD|CAL0001681 - symbol:MTO1 species:5476 "Candida albica... 1016 1.6e-102 1
FB|FBgn0034735 - symbol:CG4610 species:7227 "Drosophila m... 1015 2.0e-102 1
MGI|MGI:1915541 - symbol:Mto1 "mitochondrial translation ... 1006 1.8e-101 1
UNIPROTKB|O53441 - symbol:glyA1 "Serine hydroxymethyltran... 981 8.2e-99 1
UNIPROTKB|Q9Y2Z2 - symbol:MTO1 "Protein MTO1 homolog, mit... 522 1.7e-97 2
POMBASE|SPBC30B4.06c - symbol:SPBC30B4.06c "mitochondrial... 967 2.5e-97 1
WB|WBGene00009944 - symbol:F52H3.2 species:6239 "Caenorha... 964 5.2e-97 1
UNIPROTKB|I3L655 - symbol:MTO1 "Uncharacterized protein" ... 514 2.8e-96 3
ZFIN|ZDB-GENE-070209-253 - symbol:mto1 "mitochondrial tra... 941 1.6e-94 1
UNIPROTKB|F1NQ08 - symbol:MTO1 "Uncharacterized protein" ... 932 1.9e-93 1
TAIR|locus:2127806 - symbol:SHM3 "serine hydroxymethyltra... 880 1.5e-87 1
UNIPROTKB|Q47XQ9 - symbol:dnaX "DNA polymerase III, gamma... 872 1.1e-86 1
TIGR_CMR|CPS_3744 - symbol:CPS_3744 "DNA polymerase III, ... 872 1.1e-86 1
POMBASE|SPAC18G6.04c - symbol:shm2 "serine hydroxymethylt... 845 1.1e-83 1
SGD|S000000467 - symbol:SHM1 "Mitochondrial serine hydrox... 827 7.0e-83 2
TIGR_CMR|CBU_0659 - symbol:CBU_0659 "DNA polymerase III, ... 833 2.2e-82 1
TIGR_CMR|SO_2013 - symbol:SO_2013 "DNA polymerase III, ga... 826 1.3e-81 1
DICTYBASE|DDB_G0291652 - symbol:shmt2 "serine hydroxymeth... 813 3.3e-80 1
DICTYBASE|DDB_G0277947 - symbol:shmt1 "serine hydroxymeth... 812 4.2e-80 1
UNIPROTKB|Q9KT51 - symbol:VC_1054 "DNA polymerase III, su... 809 8.9e-80 1
TIGR_CMR|VC_1054 - symbol:VC_1054 "DNA polymerase III, su... 809 8.9e-80 1
UNIPROTKB|P06710 - symbol:dnaX species:83333 "Escherichia... 791 5.4e-79 2
GENEDB_PFALCIPARUM|PFL2115c - symbol:PFL2115c "glucose in... 492 9.7e-78 4
UNIPROTKB|Q8I4Z0 - symbol:PFL2115c "Glucose inhibited div... 492 9.7e-78 4
TAIR|locus:2030581 - symbol:SHM6 "serine hydroxymethyltra... 539 1.5e-74 2
GENEDB_PFALCIPARUM|PFL1720w - symbol:PFL1720w "Serine hyd... 740 2.6e-72 1
UNIPROTKB|Q8I566 - symbol:PFL1720w "Serine hydroxymethylt... 740 2.6e-72 1
TAIR|locus:2035937 - symbol:SHM7 "serine hydroxymethyltra... 510 2.5e-71 2
TIGR_CMR|SPO_3550 - symbol:SPO_3550 "DNA polymerase III, ... 655 3.7e-63 1
UNIPROTKB|G4MRB4 - symbol:MGG_13781 "Serine hydroxymethyl... 652 7.7e-63 1
TIGR_CMR|GSU_0094 - symbol:GSU_0094 "DNA polymerase III, ... 643 7.1e-62 1
TAIR|locus:2148463 - symbol:SHM2 "serine hydroxymethyltra... 642 9.1e-62 1
ASPGD|ASPL0000008876 - symbol:AN10745 species:162425 "Eme... 641 1.2e-61 1
TIGR_CMR|BA_0019 - symbol:BA_0019 "DNA polymerase III, ga... 630 1.8e-60 1
TIGR_CMR|CJE_1293 - symbol:CJE_1293 "DNA polymerase III, ... 625 6.1e-60 1
FB|FBgn0029823 - symbol:CG3011 species:7227 "Drosophila m... 606 2.1e-59 2
ZFIN|ZDB-GENE-071213-1 - symbol:shmt2 "serine hydroxymeth... 615 7.2e-59 1
TIGR_CMR|ECH_0014 - symbol:ECH_0014 "DNA polymerase III, ... 601 2.3e-57 1
UNIPROTKB|Q97RF7 - symbol:dnaX "DNA polymerase III, gamma... 597 6.1e-57 1
UNIPROTKB|Q60V73 - symbol:mel-32 "Serine hydroxymethyltra... 569 1.4e-56 2
UNIPROTKB|P09122 - symbol:dnaX "DNA polymerase III subuni... 590 3.4e-56 1
TIGR_CMR|CHY_2675 - symbol:CHY_2675 "putative DNA polymer... 590 3.4e-56 1
WARNING: Descriptions of 167 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|P0A6U3 [details] [associations]
symbol:mnmG "protein involved in a tRNA modification
pathway" species:83333 "Escherichia coli K-12" [GO:0002098 "tRNA
wobble uridine modification" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA;IDA]
[GO:0030488 "tRNA methylation" evidence=IMP] HAMAP:MF_00129
InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737
GO:GO:0050660 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:L10328 EMBL:K00826 EMBL:J01657
EMBL:X01631 GO:GO:0002098 GO:GO:0030488 eggNOG:COG0445
HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281 PIR:F65177
RefSeq:NP_418197.1 RefSeq:YP_491688.1 PDB:3CES PDB:3CP2 PDBsum:3CES
PDBsum:3CP2 ProteinModelPortal:P0A6U3 SMR:P0A6U3 DIP:DIP-35786N
IntAct:P0A6U3 PRIDE:P0A6U3 EnsemblBacteria:EBESCT00000003372
EnsemblBacteria:EBESCT00000017757 GeneID:12934264 GeneID:948248
KEGG:ecj:Y75_p3427 KEGG:eco:b3741 PATRIC:32122981 EchoBASE:EB0370
EcoGene:EG10375 BioCyc:EcoCyc:EG10375-MONOMER
BioCyc:ECOL316407:JW3719-MONOMER EvolutionaryTrace:P0A6U3
Genevestigator:P0A6U3 Uniprot:P0A6U3
Length = 629
Score = 1696 (602.1 bits), Expect = 1.4e-174, P = 1.4e-174
Identities = 337/582 (57%), Positives = 428/582 (73%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R
Sbjct: 56 KGHLVKEV----DALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTA 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS
Sbjct: 112 LENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +
Sbjct: 172 GGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN + HP+Q+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF +
Sbjct: 231 GNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADR 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H IFLEPEG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P
Sbjct: 291 NQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK +LE+K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYL
Sbjct: 351 RDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYL 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K
Sbjct: 411 GVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKL 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I +E QRLK TW+ PS E L + E S +LL P + Y LT+L
Sbjct: 471 ENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTP-- 528
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ + E +Q++IQ++YEGYI RQ P LDY ++ LS
Sbjct: 529 ----FAPALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN +KP +IGQASRISGVTPAA+++LL++LK G L+
Sbjct: 585 EVIAKLNDHKPASIGQASRISGVTPAAISILLVWLKKQGMLR 626
>UNIPROTKB|Q8E8A9 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:211586 "Shewanella oneidensis
MR-1" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_720274.1 ProteinModelPortal:Q8E8A9 SMR:Q8E8A9
GeneID:1172334 KEGG:son:SO_4758 PATRIC:23529185 Uniprot:Q8E8A9
Length = 629
Score = 1679 (596.1 bits), Expect = 8.9e-173, P = 8.9e-173
Identities = 338/582 (58%), Positives = 425/582 (73%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG MAIATD +GIQFR LNSSKG AVRATRAQ DR LY+Q I+
Sbjct: 56 KGHLVKEI----DALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNI 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
L+NQ NL +FQ+ VDD++++ + ++GVVT++G+ F + V+LT GTFL+GKIHIGL++YS
Sbjct: 112 LQNQANLRIFQQAVDDIVVENDHVVGVVTQMGLAFEASAVVLTAGTFLSGKIHIGLENYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + +LA RL+EL + GRLKTGTPPRID TIDFS+M EQ GD P+PV S +
Sbjct: 172 GGRAGDPPSIALAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGD-TPLPVMSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G+++ HPKQ+SC+ITHTNEKTH+IIR SP++SG IE IGPRYCPSIEDK++RF K
Sbjct: 231 GDVSHHPKQISCWITHTNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ NE YPNGISTSLPF+ Q+ LV+SI GM+NA I+RPGYAIEYDYF+P
Sbjct: 291 SSHQIFIEPEGLTTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK+SLETK I+GLFFAGQINGTTGYEEA +QGLLAG+NA+L Q ++ W P RD+AY+
Sbjct: 351 RDLKNSLETKTINGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYI 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLT G +LG V +W F +K
Sbjct: 411 GVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWAAFSEKM 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I ELQRL+ WI+P+ L I E S LL P ++YN L ++G
Sbjct: 471 ESIELELQRLRSQWIHPNSPLVPVLNPHLNTPISREASFEELLRRPEMDYNKLMQIEGF- 529
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
G L + + E Q++IQ++Y GYI RQ P NLDY ++ LS
Sbjct: 530 GPGLADP-LAAE----QVQIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN +KPETIGQASRISG+TPAA+++LL++LK G L+
Sbjct: 585 EVIAKLNSHKPETIGQASRISGITPAAISILLVHLKKRGLLR 626
>TIGR_CMR|SO_4758 [details] [associations]
symbol:SO_4758 "glucose-inhibited division protein A"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0002098 eggNOG:COG0445
HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_720274.1 ProteinModelPortal:Q8E8A9 SMR:Q8E8A9
GeneID:1172334 KEGG:son:SO_4758 PATRIC:23529185 Uniprot:Q8E8A9
Length = 629
Score = 1679 (596.1 bits), Expect = 8.9e-173, P = 8.9e-173
Identities = 338/582 (58%), Positives = 425/582 (73%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG MAIATD +GIQFR LNSSKG AVRATRAQ DR LY+Q I+
Sbjct: 56 KGHLVKEI----DALGGAMAIATDYAGIQFRTLNSSKGPAVRATRAQADRALYRQKIQNI 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
L+NQ NL +FQ+ VDD++++ + ++GVVT++G+ F + V+LT GTFL+GKIHIGL++YS
Sbjct: 112 LQNQANLRIFQQAVDDIVVENDHVVGVVTQMGLAFEASAVVLTAGTFLSGKIHIGLENYS 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + +LA RL+EL + GRLKTGTPPRID TIDFS+M EQ GD P+PV S +
Sbjct: 172 GGRAGDPPSIALAHRLRELPIRVGRLKTGTPPRIDANTIDFSQMTEQKGD-TPLPVMSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G+++ HPKQ+SC+ITHTNEKTH+IIR SP++SG IE IGPRYCPSIEDK++RF K
Sbjct: 231 GDVSHHPKQISCWITHTNEKTHDIIRGGLDRSPMYSGVIEGIGPRYCPSIEDKIHRFSDK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ NE YPNGISTSLPF+ Q+ LV+SI GM+NA I+RPGYAIEYDYF+P
Sbjct: 291 SSHQIFIEPEGLTTNEIYPNGISTSLPFDVQLNLVRSIKGMENAEIVRPGYAIEYDYFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK+SLETK I+GLFFAGQINGTTGYEEA +QGLLAG+NA+L Q ++ W P RD+AY+
Sbjct: 351 RDLKNSLETKTINGLFFAGQINGTTGYEEAGAQGLLAGMNASLQVQGKEAWCPRRDEAYI 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLT G +LG V +W F +K
Sbjct: 411 GVLVDDLSTLGTKEPYRMFTSRAEYRLLLREDNADLRLTAKGRELGLVDDARWAAFSEKM 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I ELQRL+ WI+P+ L I E S LL P ++YN L ++G
Sbjct: 471 ESIELELQRLRSQWIHPNSPLVPVLNPHLNTPISREASFEELLRRPEMDYNKLMQIEGF- 529
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
G L + + E Q++IQ++Y GYI RQ P NLDY ++ LS
Sbjct: 530 GPGLADP-LAAE----QVQIQVKYSGYIQRQQEEINKAVRNENTGLPLNLDYKEVPGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN +KPETIGQASRISG+TPAA+++LL++LK G L+
Sbjct: 585 EVIAKLNSHKPETIGQASRISGITPAAISILLVHLKKRGLLR 626
>UNIPROTKB|Q87TS3 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:223283 "Pseudomonas syringae pv.
tomato str. DC3000" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00129
InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737
GO:GO:0050660 EMBL:AE016853 GenomeReviews:AE016853_GR GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_795328.1 ProteinModelPortal:Q87TS3 SMR:Q87TS3
GeneID:1187302 KEGG:pst:PSPTO_5610 PATRIC:20002796
BioCyc:PSYR223283:GJIX-5683-MONOMER Uniprot:Q87TS3
Length = 630
Score = 1667 (591.9 bits), Expect = 1.7e-171, P = 1.7e-171
Identities = 333/565 (58%), Positives = 414/565 (73%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+DA+GG MA+ATDK GIQFR+LNS KG AVRATRAQ DR+LYK AIR LENQ NL++FQ
Sbjct: 63 IDALGGAMAMATDKGGIQFRVLNSRKGPAVRATRAQADRVLYKAAIREILENQPNLWIFQ 122
Query: 828 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 887
+ DDLI++ +++ GVVT++G++ + +V+LTTGTFL G IHIG+++YS GR GD + +
Sbjct: 123 QACDDLIVEQDQVRGVVTQMGLRILADSVVLTTGTFLGGLIHIGMQNYSGGRAGDPPSIA 182
Query: 888 LAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLS 947
LA+RL+EL L GRLKTGTPPRID R++DFS M EQ GD P+ V S LG+ HP Q+S
Sbjct: 183 LAQRLRELPLRVGRLKTGTPPRIDGRSVDFSVMTEQPGD-TPILVMSFLGSKEQHPAQVS 241
Query: 948 CFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEG 1007
C+ITHTN +TH II S SP++SG IE IGPRYCPSIEDK++RF K+SH +F+EPEG
Sbjct: 242 CWITHTNARTHEIIASNLDRSPMYSGVIEGIGPRYCPSIEDKIHRFADKESHQVFIEPEG 301
Query: 1008 IVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQ 1067
+ +E YPNGISTSLPF+ Q+++V+SI GM+NA+I+RPGYAIEYDYF+P +LK SLETK
Sbjct: 302 LTTHELYPNGISTSLPFDVQLQIVRSIRGMENAHIVRPGYAIEYDYFDPRDLKYSLETKV 361
Query: 1068 IHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127
I GLFFAGQINGTTGYEEA +QGLLAG NAAL +Q RD W P RD+AY+GVLVDDLIT G
Sbjct: 362 IGGLFFAGQINGTTGYEEAGAQGLLAGTNAALRAQGRDSWCPRRDEAYIGVLVDDLITLG 421
Query: 1128 IQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLK 1187
QEPYRMFTSRAEYRL LREDNADLRLTE G +LG V +W F KRE I E QRLK
Sbjct: 422 TQEPYRMFTSRAEYRLILREDNADLRLTEKGRELGLVDDARWAAFCTKRESIELEEQRLK 481
Query: 1188 DTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQ 1247
TW+ P G + HEY+L NLLT P ++YN+L +L G G
Sbjct: 482 STWVRPGTQQGDAISAHFGTPLTHEYNLLNLLTRPEIDYNSLIALTG-QG-------CAD 533
Query: 1248 EDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKYKP 1307
+ +Q++I+ +Y GYI RQ P ++DY I LS E + KL +P
Sbjct: 534 PLVAEQVEIKTKYAGYIDRQQEEIARLRASEDTRLPEDIDYTGISGLSKEIQSKLGITRP 593
Query: 1308 ETIGQASRISGVTPAALTLLLIYLK 1332
ET+GQASRI GVTPAA++LL+I+LK
Sbjct: 594 ETLGQASRIPGVTPAAISLLMIHLK 618
>UNIPROTKB|Q9KNG4 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:243277 "Vibrio cholerae O1 biovar
El Tor str. N16961" [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134
GO:GO:0005737 GO:GO:0050660 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0002098 eggNOG:COG0445 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
PIR:G82035 RefSeq:NP_232401.1 ProteinModelPortal:Q9KNG4 SMR:Q9KNG4
DNASU:2614952 GeneID:2614952 KEGG:vch:VC2775 PATRIC:20084596
Uniprot:Q9KNG4
Length = 631
Score = 1635 (580.6 bits), Expect = 4.1e-168, P = 4.1e-168
Identities = 325/582 (55%), Positives = 420/582 (72%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG+MA A D +GIQFR LN+SKG AVRATRAQ DR LYK +R
Sbjct: 56 KGHLVKEV----DAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNV 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LEN NL LFQ+ VDD+I++ + I GVVT++G+KF +K V+LT GTFL GKIHIGL++Y+
Sbjct: 112 LENTPNLTLFQQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYA 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + +LA RL+EL RLKTGTPPRID ++DFS +E Q GD +P PVFS +
Sbjct: 172 GGRAGDPPSIALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGD-NPTPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G HP+Q+ C+ITHTNE+TH++IR+ SP+++G IE IGPRYCPSIEDKV RF K
Sbjct: 231 GKREHHPRQIPCYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ E YPNGISTSLPF+ Q+++V+S+ G +NA+I+RPGYAIEYD+F+P
Sbjct: 291 DSHQIFIEPEGLTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK + ETK IHGLFFAGQINGTTGYEEAA+QGL+AGLNA+L+SQD++ W P RDQAY+
Sbjct: 351 RDLKQTYETKYIHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYM 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL T G +EPYRMFTSRAEYRL LREDNADLRLTE +LG V +W F +K
Sbjct: 411 GVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKI 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ + KE QRL++TW+NP+ + + +L + E S +LL P + Y LT+L
Sbjct: 471 DNMAKERQRLQETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPA-- 528
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ + + +Q++IQ++Y+GYI RQ P LDY +++ LS
Sbjct: 529 ----FAPALEDAEAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN KPETIG ASRISG+TPAA+++LL++LK G LK
Sbjct: 585 EVVLKLNAAKPETIGIASRISGITPAAISILLVHLKKHGMLK 626
>TIGR_CMR|VC_2775 [details] [associations]
symbol:VC_2775 "glucose inhibited division protein A"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0002098
eggNOG:COG0445 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281 PIR:G82035
RefSeq:NP_232401.1 ProteinModelPortal:Q9KNG4 SMR:Q9KNG4
DNASU:2614952 GeneID:2614952 KEGG:vch:VC2775 PATRIC:20084596
Uniprot:Q9KNG4
Length = 631
Score = 1635 (580.6 bits), Expect = 4.1e-168, P = 4.1e-168
Identities = 325/582 (55%), Positives = 420/582 (72%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DAMGG+MA A D +GIQFR LN+SKG AVRATRAQ DR LYK +R
Sbjct: 56 KGHLVKEV----DAMGGLMAQAIDHAGIQFRTLNASKGPAVRATRAQADRALYKAYVRNV 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LEN NL LFQ+ VDD+I++ + I GVVT++G+KF +K V+LT GTFL GKIHIGL++Y+
Sbjct: 112 LENTPNLTLFQQAVDDVIVEHDHIRGVVTQMGLKFHAKAVVLTVGTFLGGKIHIGLENYA 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + +LA RL+EL RLKTGTPPRID ++DFS +E Q GD +P PVFS +
Sbjct: 172 GGRAGDPPSIALAHRLRELPFRVDRLKTGTPPRIDANSVDFSVLEAQHGD-NPTPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G HP+Q+ C+ITHTNE+TH++IR+ SP+++G IE IGPRYCPSIEDKV RF K
Sbjct: 231 GKREHHPRQIPCYITHTNERTHDVIRANLDRSPMYAGIIEGIGPRYCPSIEDKVMRFADK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ E YPNGISTSLPF+ Q+++V+S+ G +NA+I+RPGYAIEYD+F+P
Sbjct: 291 DSHQIFIEPEGLTTTELYPNGISTSLPFDVQVQIVRSMKGFENAHIVRPGYAIEYDFFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK + ETK IHGLFFAGQINGTTGYEEAA+QGL+AGLNA+L+SQD++ W P RDQAY+
Sbjct: 351 RDLKQTYETKYIHGLFFAGQINGTTGYEEAAAQGLMAGLNASLYSQDKEGWSPRRDQAYM 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL T G +EPYRMFTSRAEYRL LREDNADLRLTE +LG V +W F +K
Sbjct: 411 GVLIDDLSTMGTKEPYRMFTSRAEYRLLLREDNADLRLTEKARELGLVDDARWARFNQKI 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ + KE QRL++TW+NP+ + + +L + E S +LL P + Y LT+L
Sbjct: 471 DNMAKERQRLQETWMNPNSVGVEQLNTLLKTPMSREASGEDLLRRPEMTYELLTTLPA-- 528
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ + + +Q++IQ++Y+GYI RQ P LDY +++ LS
Sbjct: 529 ----FAPALEDAEAAEQVEIQVKYDGYIQRQQDEIEKSLRHEHTKLPAELDYKQVKGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KLN KPETIG ASRISG+TPAA+++LL++LK G LK
Sbjct: 585 EVVLKLNAAKPETIGIASRISGITPAAISILLVHLKKHGMLK 626
>UNIPROTKB|P94613 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:227377 "Coxiella burnetii RSA
493" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0002098 EMBL:Y10436
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_820901.2 ProteinModelPortal:P94613 SMR:P94613
GeneID:1209837 KEGG:cbu:CBU_1924 PATRIC:17932579
BioCyc:CBUR227377:GJ7S-1897-MONOMER Uniprot:P94613
Length = 627
Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
Identities = 313/565 (55%), Positives = 402/565 (71%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+DA+GGIMA+A D++GI FR LN+ KG AVRATRAQ DR+LYK AI LENQ +L+LFQ
Sbjct: 64 IDALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQ 123
Query: 828 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 887
+ VDDLII+ N+ GVVT++G+ F++ TVILT GTFL GKIHIG+ Y GR GD +
Sbjct: 124 QGVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALA 183
Query: 888 LAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLS 947
LA+RL+E+ RLKTGTPPRID RTI++S++ EQ D P+P+ S + P+Q+S
Sbjct: 184 LAERLREMPFRVERLKTGTPPRIDGRTINYSQLIEQPSD-QPLPLMSYWSHGEDRPRQVS 242
Query: 948 CFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEG 1007
CFIT TNEKTH+IIR+ K SP+FSG IE +GPRYCPSIEDK+ RF + SH +FLEPEG
Sbjct: 243 CFITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHQLFLEPEG 302
Query: 1008 IVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQ 1067
+ E YPNG+STSL F+ Q++ + SI G++ +I RPGYAIEYDYF+P +LK SLETK
Sbjct: 303 LNTPEVYPNGVSTSLSFDVQLDFIHSIKGLEKCHITRPGYAIEYDYFDPRDLKPSLETKY 362
Query: 1068 IHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127
+ GL+FAGQINGTTGYEEAA+QGL+AG+NAAL Q+R PW P RD+AY+GVL+DDL T+G
Sbjct: 363 VPGLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRG 422
Query: 1128 IQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLK 1187
EPYRMFTSRAEYRL LR+DNADLRLTE G LGCV ++W F KK+E I KE QRLK
Sbjct: 423 TNEPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLK 482
Query: 1188 DTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQ 1247
I P E + ++ +YS +LL P +NY L ++ + + +
Sbjct: 483 KQRIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELG------PAVLE 536
Query: 1248 EDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKYKP 1307
+ +Q+ IQ +YEGY+ Q P +LDY ++ LS E RQKLN+ KP
Sbjct: 537 PSVAEQIDIQAKYEGYLTHQLAEIARQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKP 596
Query: 1308 ETIGQASRISGVTPAALTLLLIYLK 1332
T+GQASRI G+TPAA++LLL++LK
Sbjct: 597 TTLGQASRIPGITPAAISLLLVHLK 621
>TIGR_CMR|CBU_1924 [details] [associations]
symbol:CBU_1924 "glucose inhibited division protein A"
species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0003674 "molecular_function"
evidence=ND] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0002098 EMBL:Y10436 eggNOG:COG0445
HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_820901.2 ProteinModelPortal:P94613 SMR:P94613
GeneID:1209837 KEGG:cbu:CBU_1924 PATRIC:17932579
BioCyc:CBUR227377:GJ7S-1897-MONOMER Uniprot:P94613
Length = 627
Score = 1595 (566.5 bits), Expect = 7.1e-164, P = 7.1e-164
Identities = 313/565 (55%), Positives = 402/565 (71%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+DA+GGIMA+A D++GI FR LN+ KG AVRATRAQ DR+LYK AI LENQ +L+LFQ
Sbjct: 64 IDALGGIMALAADQAGIHFRTLNARKGPAVRATRAQADRVLYKAAIHHALENQPHLWLFQ 123
Query: 828 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 887
+ VDDLII+ N+ GVVT++G+ F++ TVILT GTFL GKIHIG+ Y GR GD +
Sbjct: 124 QGVDDLIIQNNRAAGVVTQMGLAFYAPTVILTVGTFLGGKIHIGMNHYRGGRAGDPPALA 183
Query: 888 LAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLS 947
LA+RL+E+ RLKTGTPPRID RTI++S++ EQ D P+P+ S + P+Q+S
Sbjct: 184 LAERLREMPFRVERLKTGTPPRIDGRTINYSQLIEQPSD-QPLPLMSYWSHGEDRPRQVS 242
Query: 948 CFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEG 1007
CFIT TNEKTH+IIR+ K SP+FSG IE +GPRYCPSIEDK+ RF + SH +FLEPEG
Sbjct: 243 CFITQTNEKTHDIIRNGLKTSPLFSGVIEGVGPRYCPSIEDKIVRFADRNSHQLFLEPEG 302
Query: 1008 IVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQ 1067
+ E YPNG+STSL F+ Q++ + SI G++ +I RPGYAIEYDYF+P +LK SLETK
Sbjct: 303 LNTPEVYPNGVSTSLSFDVQLDFIHSIKGLEKCHITRPGYAIEYDYFDPRDLKPSLETKY 362
Query: 1068 IHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127
+ GL+FAGQINGTTGYEEAA+QGL+AG+NAAL Q+R PW P RD+AY+GVL+DDL T+G
Sbjct: 363 VPGLYFAGQINGTTGYEEAAAQGLIAGINAALQIQERAPWTPARDEAYIGVLIDDLTTRG 422
Query: 1128 IQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLK 1187
EPYRMFTSRAEYRL LR+DNADLRLTE G LGCV ++W F KK+E I KE QRLK
Sbjct: 423 TNEPYRMFTSRAEYRLLLRQDNADLRLTEKGRDLGCVDDERWNFFVKKKETIEKEQQRLK 482
Query: 1188 DTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQ 1247
I P E + ++ +YS +LL P +NY L ++ + + +
Sbjct: 483 KQRIWPKSTVAKAIESRFQQLLERDYSAMDLLRRPEINYPALMQIEELG------PAVLE 536
Query: 1248 EDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKYKP 1307
+ +Q+ IQ +YEGY+ Q P +LDY ++ LS E RQKLN+ KP
Sbjct: 537 PSVAEQIDIQAKYEGYLTHQLAEIARQKKYQTAQIPSSLDYNQVTGLSNEVRQKLNETKP 596
Query: 1308 ETIGQASRISGVTPAALTLLLIYLK 1332
T+GQASRI G+TPAA++LLL++LK
Sbjct: 597 TTLGQASRIPGITPAAISLLLVHLK 621
>UNIPROTKB|Q47U38 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:167879 "Colwellia psychrerythraea
34H" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:YP_271685.1 ProteinModelPortal:Q47U38 SMR:Q47U38
STRING:Q47U38 GeneID:3519949 KEGG:cps:CPS_5047 PATRIC:21472873
BioCyc:CPSY167879:GI48-5047-MONOMER Uniprot:Q47U38
Length = 629
Score = 1563 (555.3 bits), Expect = 1.7e-160, P = 1.7e-160
Identities = 314/582 (53%), Positives = 405/582 (69%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG+MA A D S IQFR LNSSKG AVRATRAQ DRILY+ +R
Sbjct: 56 KGHLVKEI----DALGGLMATAIDHSAIQFRTLNSSKGPAVRATRAQADRILYRNYVRNT 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ DDLI++ ++++GV T++G+KF K+V+LT GTFL+G IHIGL +Y
Sbjct: 112 LENQENLTIFQQPCDDLILENDRVVGVSTQMGLKFKGKSVVLTVGTFLSGLIHIGLNNYQ 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD ++ +LA +++++ RLKTGTPPR+D R++DFS MEEQ GD P PVFS +
Sbjct: 172 GGRAGDPASVNLAAKMRDMPFRMDRLKTGTPPRLDARSLDFSVMEEQAGD-TPSPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G+ HP+Q+SCFITHTNE+TH IR SP+++G IE +GPRYCPSIEDK+ RF K
Sbjct: 231 GSQADHPEQISCFITHTNEQTHQHIRDGLDRSPMYTGVIEGVGPRYCPSIEDKITRFADK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ +E YPNGISTSLPF+ Q+ LV+SI G +NA I RPGYAIEYDYF+P
Sbjct: 291 SSHQIFVEPEGLTTHEVYPNGISTSLPFDVQMNLVRSIKGFENAFITRPGYAIEYDYFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK SLE+K + L+FAGQINGTTGYEEA +QGL+AG NAA ++RD + GRDQAY+
Sbjct: 351 RDLKQSLESKFVQNLYFAGQINGTTGYEEAGAQGLIAGANAANRVKERDEFTLGRDQAYM 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL T G +EPYRMFTSRAEYRL LREDNAD+RLTE G K+G V +W+ F +K
Sbjct: 411 GVLIDDLATLGTKEPYRMFTSRAEYRLLLREDNADIRLTEQGRKIGLVGDTRWQRFNEKM 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + E QRL+ TW+ + +L + E SL +L+ P VNY L ++G+
Sbjct: 471 ENVELERQRLRSTWVQKDHTKIDQINALLKTPMSKEASLEDLIRRPEVNYTDLMKIEGLG 530
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
I +Q++IQ +Y GYI RQ P + DY +I LS
Sbjct: 531 ------PAIEDSQASEQIEIQTKYAGYIDRQLDEIAKKKRNEDTKIPRDFDYQQISGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KL PETIG+ASRISG+TPAA++LLL+YLK G L+
Sbjct: 585 EVVAKLKDACPETIGKASRISGITPAAISLLLVYLKKHGLLR 626
>TIGR_CMR|CPS_5047 [details] [associations]
symbol:CPS_5047 "glucose inhibited division protein A"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0002098 eggNOG:COG0445
HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:YP_271685.1 ProteinModelPortal:Q47U38 SMR:Q47U38
STRING:Q47U38 GeneID:3519949 KEGG:cps:CPS_5047 PATRIC:21472873
BioCyc:CPSY167879:GI48-5047-MONOMER Uniprot:Q47U38
Length = 629
Score = 1563 (555.3 bits), Expect = 1.7e-160, P = 1.7e-160
Identities = 314/582 (53%), Positives = 405/582 (69%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG+MA A D S IQFR LNSSKG AVRATRAQ DRILY+ +R
Sbjct: 56 KGHLVKEI----DALGGLMATAIDHSAIQFRTLNSSKGPAVRATRAQADRILYRNYVRNT 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ DDLI++ ++++GV T++G+KF K+V+LT GTFL+G IHIGL +Y
Sbjct: 112 LENQENLTIFQQPCDDLILENDRVVGVSTQMGLKFKGKSVVLTVGTFLSGLIHIGLNNYQ 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD ++ +LA +++++ RLKTGTPPR+D R++DFS MEEQ GD P PVFS +
Sbjct: 172 GGRAGDPASVNLAAKMRDMPFRMDRLKTGTPPRLDARSLDFSVMEEQAGD-TPSPVFSFM 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G+ HP+Q+SCFITHTNE+TH IR SP+++G IE +GPRYCPSIEDK+ RF K
Sbjct: 231 GSQADHPEQISCFITHTNEQTHQHIRDGLDRSPMYTGVIEGVGPRYCPSIEDKITRFADK 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ +E YPNGISTSLPF+ Q+ LV+SI G +NA I RPGYAIEYDYF+P
Sbjct: 291 SSHQIFVEPEGLTTHEVYPNGISTSLPFDVQMNLVRSIKGFENAFITRPGYAIEYDYFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK SLE+K + L+FAGQINGTTGYEEA +QGL+AG NAA ++RD + GRDQAY+
Sbjct: 351 RDLKQSLESKFVQNLYFAGQINGTTGYEEAGAQGLIAGANAANRVKERDEFTLGRDQAYM 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL T G +EPYRMFTSRAEYRL LREDNAD+RLTE G K+G V +W+ F +K
Sbjct: 411 GVLIDDLATLGTKEPYRMFTSRAEYRLLLREDNADIRLTEQGRKIGLVGDTRWQRFNEKM 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E + E QRL+ TW+ + +L + E SL +L+ P VNY L ++G+
Sbjct: 471 ENVELERQRLRSTWVQKDHTKIDQINALLKTPMSKEASLEDLIRRPEVNYTDLMKIEGLG 530
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
I +Q++IQ +Y GYI RQ P + DY +I LS
Sbjct: 531 ------PAIEDSQASEQIEIQTKYAGYIDRQLDEIAKKKRNEDTKIPRDFDYQQISGLSN 584
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS-GFLK 1337
E KL PETIG+ASRISG+TPAA++LLL+YLK G L+
Sbjct: 585 EVVAKLKDACPETIGKASRISGITPAAISLLLVYLKKHGLLR 626
>UNIPROTKB|Q60CS5 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:243233 "Methylococcus capsulatus
str. Bath" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00129
InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737
GO:GO:0050660 EMBL:AE017282 GenomeReviews:AE017282_GR GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:YP_112542.1 ProteinModelPortal:Q60CS5 SMR:Q60CS5
GeneID:3103716 KEGG:mca:MCA0001 PATRIC:22603715 Uniprot:Q60CS5
Length = 625
Score = 1557 (553.2 bits), Expect = 7.5e-160, P = 7.5e-160
Identities = 322/577 (55%), Positives = 410/577 (71%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DAMGG+MA A D++GIQFRILN+SKG AVRATRAQ DR LY++A+R
Sbjct: 56 KGHLVKEI----DAMGGLMARAADRAGIQFRILNASKGPAVRATRAQADRSLYRKAVREG 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
L Q NL LFQ+ V DLI++ + GVVT++G+KF S+ V+LT GTFL G+IHIGL++Y
Sbjct: 112 LSAQENLSLFQQTVVDLIVEGRRAAGVVTQMGLKFRSRCVVLTVGTFLAGRIHIGLENYD 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD T LA+RL++L RLKTGTPPRID+R++DFS+M EQ GD DP PVFS L
Sbjct: 172 GGRAGDPPATDLARRLRDLGFKVARLKTGTPPRIDRRSVDFSRMAEQPGD-DPTPVFSFL 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
G HP Q+SC+IT TNE+TH +IR+ SP+F+G IE IGPRYCPSIEDKV RF ++
Sbjct: 231 GTREEHPPQVSCYITRTNERTHELIRAGLDRSPMFTGVIEGIGPRYCPSIEDKVVRFAER 290
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IF+EPEG+ E YPNGISTSLPF+ Q+ +V+SI G ++A I RPGYAIEYD+F+P
Sbjct: 291 DSHQIFVEPEGLDSLEIYPNGISTSLPFDVQLAVVRSIQGFEDARITRPGYAIEYDFFDP 350
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+L+ SLET+ + LFFAGQINGTTGYEEAA+QGLLAGLNAA ++D +PW PGRD+AYL
Sbjct: 351 RDLRHSLETRHMENLFFAGQINGTTGYEEAAAQGLLAGLNAARKARDLEPWWPGRDEAYL 410
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDLIT+G EPYRMFTSRAEYRL LREDNADLRLTE G LG V +W FE KR
Sbjct: 411 GVLVDDLITRGTSEPYRMFTSRAEYRLVLREDNADLRLTETGRALGLVDDARWSAFEAKR 470
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGK-RIKHEYSLSNLLTWPNVNYNTLTSLKGI 1235
E I RL I P + ES L + ++ E SL LL P+V L + G
Sbjct: 471 EAIETLGARLAARRIRPDS-SQAESWNALTEIPLQREASLLELLRRPDVG---LEHIAG- 525
Query: 1236 NGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLS 1295
+ +L+ E +++Q++I +Y GYI RQ P ++DY K+ LS
Sbjct: 526 HAPDLF--EGMDRAVREQVEIAAKYTGYIERQQAEIERVRRYEAWQLPDSMDYGKVIGLS 583
Query: 1296 IEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
E R+KL + +P T+GQA+RI G+TPAA++LLL++L+
Sbjct: 584 SEVREKLGRVRPATVGQAARIPGITPAAISLLLVHLR 620
>UNIPROTKB|Q746Q4 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:243231 "Geobacter sulfurreducens
PCA" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_954504.1 ProteinModelPortal:Q746Q4 SMR:Q746Q4
GeneID:2686579 KEGG:gsu:GSU3464 PATRIC:22029785
BioCyc:GSUL243231:GH27-3431-MONOMER Uniprot:Q746Q4
Length = 627
Score = 1411 (501.8 bits), Expect = 2.2e-144, P = 2.2e-144
Identities = 287/577 (49%), Positives = 388/577 (67%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG M D +GIQ+RILN+ KG AVRA+RAQ D+ LY+ ++
Sbjct: 59 KGHLVKEI----DALGGEMGKNIDATGIQYRILNTRKGPAVRASRAQADKQLYRLRMKHV 114
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
+E Q +L L Q EV L+++ ++ GVVTK+G++F KTVILTTGTF+ G IH+GL +Y
Sbjct: 115 MEEQEHLSLKQGEVTGLVVEDGRVRGVVTKVGVRFLGKTVILTTGTFMRGLIHVGLTNYP 174
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + L+ +L++L + GRLKTGTP R+D TIDFS++E Q GD PVP FS
Sbjct: 175 GGRAGDLPSVGLSDQLRDLGFTVGRLKTGTPARLDGNTIDFSRLEPQYGDDPPVP-FS-F 232
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
+ QL C+I +TNE+TH IIRS SP++SG IE +GPRYCPSIEDKV RFP K
Sbjct: 233 STERIDRPQLPCYIAYTNERTHEIIRSGLDRSPLYSGVIEGVGPRYCPSIEDKVMRFPDK 292
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H FLEPEG EYYP+G+STSLP + Q L +SI+G++N I+RP YAIEYDY +P
Sbjct: 293 DRHQSFLEPEGRDTVEYYPSGLSTSLPIDIQYRLYRSIEGLENVEIMRPAYAIEYDYVDP 352
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
L +SLETK I L+ AGQINGT+GYEEAA QGL+AG+NAAL Q +P + GRD+AY+
Sbjct: 353 IQLHTSLETKLIRNLYHAGQINGTSGYEEAAGQGLMAGINAALRVQGEEPLVLGRDEAYI 412
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GV++DDL+T G +EPYRMFTSRAEYRL LREDNADLRL E G +G V +++++F +KR
Sbjct: 413 GVMIDDLVTLGTREPYRMFTSRAEYRLLLREDNADLRLRERGHAVGLVRDEEYRLFLEKR 472
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I EL+RL+ + PS + E +++ + LL P++ Y L+ + +
Sbjct: 473 ERIGAELERLRTAKLLPSEADPSFLETYGMTDLRNALTFEQLLRRPDITYEELSQIDPVA 532
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
G + +K+Q++IQ++Y+GYI RQ P +LDY I LS
Sbjct: 533 G-------MVPPSVKEQVEIQIKYQGYIERQLDQVARARKLEGTRIPDDLDYTVIPGLSA 585
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
E R+KL ++ P+T+GQASRI GVTPAA+ +L + +KS
Sbjct: 586 EVREKLLRFLPDTLGQASRIQGVTPAAVGILSVAIKS 622
>TIGR_CMR|GSU_3464 [details] [associations]
symbol:GSU_3464 "glucose inhibited division protein A"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0002098 eggNOG:COG0445
HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_954504.1 ProteinModelPortal:Q746Q4 SMR:Q746Q4
GeneID:2686579 KEGG:gsu:GSU3464 PATRIC:22029785
BioCyc:GSUL243231:GH27-3431-MONOMER Uniprot:Q746Q4
Length = 627
Score = 1411 (501.8 bits), Expect = 2.2e-144, P = 2.2e-144
Identities = 287/577 (49%), Positives = 388/577 (67%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+GG M D +GIQ+RILN+ KG AVRA+RAQ D+ LY+ ++
Sbjct: 59 KGHLVKEI----DALGGEMGKNIDATGIQYRILNTRKGPAVRASRAQADKQLYRLRMKHV 114
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
+E Q +L L Q EV L+++ ++ GVVTK+G++F KTVILTTGTF+ G IH+GL +Y
Sbjct: 115 MEEQEHLSLKQGEVTGLVVEDGRVRGVVTKVGVRFLGKTVILTTGTFMRGLIHVGLTNYP 174
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + L+ +L++L + GRLKTGTP R+D TIDFS++E Q GD PVP FS
Sbjct: 175 GGRAGDLPSVGLSDQLRDLGFTVGRLKTGTPARLDGNTIDFSRLEPQYGDDPPVP-FS-F 232
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
+ QL C+I +TNE+TH IIRS SP++SG IE +GPRYCPSIEDKV RFP K
Sbjct: 233 STERIDRPQLPCYIAYTNERTHEIIRSGLDRSPLYSGVIEGVGPRYCPSIEDKVMRFPDK 292
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H FLEPEG EYYP+G+STSLP + Q L +SI+G++N I+RP YAIEYDY +P
Sbjct: 293 DRHQSFLEPEGRDTVEYYPSGLSTSLPIDIQYRLYRSIEGLENVEIMRPAYAIEYDYVDP 352
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
L +SLETK I L+ AGQINGT+GYEEAA QGL+AG+NAAL Q +P + GRD+AY+
Sbjct: 353 IQLHTSLETKLIRNLYHAGQINGTSGYEEAAGQGLMAGINAALRVQGEEPLVLGRDEAYI 412
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GV++DDL+T G +EPYRMFTSRAEYRL LREDNADLRL E G +G V +++++F +KR
Sbjct: 413 GVMIDDLVTLGTREPYRMFTSRAEYRLLLREDNADLRLRERGHAVGLVRDEEYRLFLEKR 472
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I EL+RL+ + PS + E +++ + LL P++ Y L+ + +
Sbjct: 473 ERIGAELERLRTAKLLPSEADPSFLETYGMTDLRNALTFEQLLRRPDITYEELSQIDPVA 532
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
G + +K+Q++IQ++Y+GYI RQ P +LDY I LS
Sbjct: 533 G-------MVPPSVKEQVEIQIKYQGYIERQLDQVARARKLEGTRIPDDLDYTVIPGLSA 585
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
E R+KL ++ P+T+GQASRI GVTPAA+ +L + +KS
Sbjct: 586 EVREKLLRFLPDTLGQASRIQGVTPAAVGILSVAIKS 622
>UNIPROTKB|Q3AG55 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134
GO:GO:0005737 GO:GO:0050660 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0002098 eggNOG:COG0445 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
HOGENOM:HOG000201060 RefSeq:YP_358879.1 HSSP:Q5SH33
ProteinModelPortal:Q3AG55 STRING:Q3AG55 GeneID:3728528
KEGG:chy:CHY_0007 PATRIC:21273215 BioCyc:CHYD246194:GJCN-7-MONOMER
Uniprot:Q3AG55
Length = 631
Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
Identities = 269/570 (47%), Positives = 381/570 (66%)
Query: 764 VLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 823
V+ +DA+GG M I TDK+ IQ R+LN+ KG AVR RAQ D+ Y++ ++ +E Q NL
Sbjct: 60 VVREVDALGGEMGINTDKTYIQIRMLNTGKGPAVRTLRAQADKRRYQEEMKKTIERQENL 119
Query: 824 YLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883
YL Q E ++++ K+ GV+T+ G F S+ V++T+GT+LN +I IG Y +G G
Sbjct: 120 YLKQAETIKILVEGEKVRGVLTRTGAVFTSRAVVVTSGTYLNSRIIIGDVHYPSGPAGFP 179
Query: 884 STTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHP 943
+ L+K L +L GR KTGTP R+DKRT+DFSKM EQ GD P+ FS + P
Sbjct: 180 YASLLSKSLADLGFKLGRFKTGTPARVDKRTVDFSKMIEQPGDDRPL-YFSYMSEGIKRP 238
Query: 944 KQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFL 1003
+SC++T+TN +TH II SP++SG+I+ +GPRYCPSIEDKV RF K H +FL
Sbjct: 239 N-VSCWLTYTNLETHTIILENLHRSPLYSGEIKGVGPRYCPSIEDKVVRFSDKPRHQVFL 297
Query: 1004 EPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSL 1063
EPEG+ E Y G+STSLP + QI++++++ G++ I+RP YAIEYDY +P LK +L
Sbjct: 298 EPEGLDTYEMYVQGMSTSLPEDLQIKMLRTLPGLERVEIMRPAYAIEYDYIDPTQLKLTL 357
Query: 1064 ETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDL 1123
E K I GLFFAGQINGT+GYEEAA QG++AG+NAAL+ ++++P+I R +AY+GV++DDL
Sbjct: 358 EAKHIQGLFFAGQINGTSGYEEAAGQGIVAGINAALYVKEKEPFILKRSEAYIGVMIDDL 417
Query: 1124 ITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKEL 1183
+TKG+ +PYR+ TSRAEYRL LR DNADLRLTE G+K+G V+ ++W+ F ++ E I K +
Sbjct: 418 VTKGVTDPYRLLTSRAEYRLLLRHDNADLRLTEKGYKIGLVTEERWRKFNERVEKINKLM 477
Query: 1184 QRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNT 1243
+ L++ + P+ N E KH S L P +N + + I+G+
Sbjct: 478 EFLEENQVTPTKRNLEIMEEYGTSPPKHGISGKEFLRRPEINMEAIEKIFAIDGQ----- 532
Query: 1244 EIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLN 1303
+ +D+K+Q++I ++YEGYI +Q P + DY K++ LS EA QKLN
Sbjct: 533 --FPDDVKEQVEILVKYEGYIEKQLKEIERFNKYEGKKLPPDFDYSKVKGLSAEAVQKLN 590
Query: 1304 KYKPETIGQASRISGVTPAALTLLLIYLKS 1333
KPE IGQASR+SGVTPA +++LLIYL+S
Sbjct: 591 AIKPENIGQASRVSGVTPADISVLLIYLES 620
>TIGR_CMR|CHY_0007 [details] [associations]
symbol:CHY_0007 "glucose inhibited division protein A"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0002098
eggNOG:COG0445 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
HOGENOM:HOG000201060 RefSeq:YP_358879.1 HSSP:Q5SH33
ProteinModelPortal:Q3AG55 STRING:Q3AG55 GeneID:3728528
KEGG:chy:CHY_0007 PATRIC:21273215 BioCyc:CHYD246194:GJCN-7-MONOMER
Uniprot:Q3AG55
Length = 631
Score = 1331 (473.6 bits), Expect = 6.7e-136, P = 6.7e-136
Identities = 269/570 (47%), Positives = 381/570 (66%)
Query: 764 VLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 823
V+ +DA+GG M I TDK+ IQ R+LN+ KG AVR RAQ D+ Y++ ++ +E Q NL
Sbjct: 60 VVREVDALGGEMGINTDKTYIQIRMLNTGKGPAVRTLRAQADKRRYQEEMKKTIERQENL 119
Query: 824 YLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883
YL Q E ++++ K+ GV+T+ G F S+ V++T+GT+LN +I IG Y +G G
Sbjct: 120 YLKQAETIKILVEGEKVRGVLTRTGAVFTSRAVVVTSGTYLNSRIIIGDVHYPSGPAGFP 179
Query: 884 STTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHP 943
+ L+K L +L GR KTGTP R+DKRT+DFSKM EQ GD P+ FS + P
Sbjct: 180 YASLLSKSLADLGFKLGRFKTGTPARVDKRTVDFSKMIEQPGDDRPL-YFSYMSEGIKRP 238
Query: 944 KQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFL 1003
+SC++T+TN +TH II SP++SG+I+ +GPRYCPSIEDKV RF K H +FL
Sbjct: 239 N-VSCWLTYTNLETHTIILENLHRSPLYSGEIKGVGPRYCPSIEDKVVRFSDKPRHQVFL 297
Query: 1004 EPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSL 1063
EPEG+ E Y G+STSLP + QI++++++ G++ I+RP YAIEYDY +P LK +L
Sbjct: 298 EPEGLDTYEMYVQGMSTSLPEDLQIKMLRTLPGLERVEIMRPAYAIEYDYIDPTQLKLTL 357
Query: 1064 ETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDL 1123
E K I GLFFAGQINGT+GYEEAA QG++AG+NAAL+ ++++P+I R +AY+GV++DDL
Sbjct: 358 EAKHIQGLFFAGQINGTSGYEEAAGQGIVAGINAALYVKEKEPFILKRSEAYIGVMIDDL 417
Query: 1124 ITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKEL 1183
+TKG+ +PYR+ TSRAEYRL LR DNADLRLTE G+K+G V+ ++W+ F ++ E I K +
Sbjct: 418 VTKGVTDPYRLLTSRAEYRLLLRHDNADLRLTEKGYKIGLVTEERWRKFNERVEKINKLM 477
Query: 1184 QRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNT 1243
+ L++ + P+ N E KH S L P +N + + I+G+
Sbjct: 478 EFLEENQVTPTKRNLEIMEEYGTSPPKHGISGKEFLRRPEINMEAIEKIFAIDGQ----- 532
Query: 1244 EIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLN 1303
+ +D+K+Q++I ++YEGYI +Q P + DY K++ LS EA QKLN
Sbjct: 533 --FPDDVKEQVEILVKYEGYIEKQLKEIERFNKYEGKKLPPDFDYSKVKGLSAEAVQKLN 590
Query: 1304 KYKPETIGQASRISGVTPAALTLLLIYLKS 1333
KPE IGQASR+SGVTPA +++LLIYL+S
Sbjct: 591 AIKPENIGQASRVSGVTPADISVLLIYLES 620
>UNIPROTKB|Q5HTS6 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:195099 "Campylobacter jejuni
RM1221" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0002098
eggNOG:COG0445 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:YP_179309.1 ProteinModelPortal:Q5HTS6 STRING:Q5HTS6
GeneID:3231829 KEGG:cjr:CJE1322 PATRIC:20044444
HOGENOM:HOG000201060 BioCyc:CJEJ195099:GJC0-1348-MONOMER
Uniprot:Q5HTS6
Length = 619
Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
Identities = 263/576 (45%), Positives = 361/576 (62%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ LDAMGG+M TD++GIQFRILN SKG AV+ +RAQ+D Y+ R
Sbjct: 51 KGHLVKE----LDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNK 106
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
L NL + QE+ LI++ +++ GV T + +F+K VILTTGTFLNG IH+G
Sbjct: 107 LLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQ 166
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR G+ ++ +L L+ L L GRLKTGT PR+D ++IDFS +E Q GD +P FS
Sbjct: 167 AGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNP-KAFSFR 225
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
N +P QL C+I TN TH II++ F +P+F+G+IE +GPRYCPSIEDK+ RF K
Sbjct: 226 SR-NFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDK 284
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SHH+F+EP+ I EYY NG STSLP+E Q ++++S+ G +NA I R GYAIEYDY P
Sbjct: 285 ESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEP 344
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK +LE K+I L+ AGQINGTTGYEEAA+QG +AG+NA+L ++P I RD+AY+
Sbjct: 345 TELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYI 404
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL+ KG +EPYRMFTSRAE+RL LRE+NA LRL + G+ LG +S + + +
Sbjct: 405 GVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIA 464
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ K L+ L P+ N E + +I +L ++ + + L L I
Sbjct: 465 NNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPI- 523
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ T + +++ L + +Y YI Q P N D+ + LS
Sbjct: 524 ----FETMDHYS-LREILN-EAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSN 577
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
E +KLN +KP TI AS+ISG+TPAAL +L IY+K
Sbjct: 578 EVVEKLNHHKPPTIFAASQISGITPAALDILQIYIK 613
>TIGR_CMR|CJE_1322 [details] [associations]
symbol:CJE_1322 "glucose inhibited division protein A"
species:195099 "Campylobacter jejuni RM1221" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0002098 eggNOG:COG0445 KO:K03495
OMA:AQMSCNP ProtClustDB:PRK05192 InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280
PROSITE:PS01281 RefSeq:YP_179309.1 ProteinModelPortal:Q5HTS6
STRING:Q5HTS6 GeneID:3231829 KEGG:cjr:CJE1322 PATRIC:20044444
HOGENOM:HOG000201060 BioCyc:CJEJ195099:GJC0-1348-MONOMER
Uniprot:Q5HTS6
Length = 619
Score = 1226 (436.6 bits), Expect = 8.9e-125, P = 8.9e-125
Identities = 263/576 (45%), Positives = 361/576 (62%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ LDAMGG+M TD++GIQFRILN SKG AV+ +RAQ+D Y+ R
Sbjct: 51 KGHLVKE----LDAMGGLMGEITDEAGIQFRILNESKGVAVQGSRAQIDMDKYRIIARNK 106
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
L NL + QE+ LI++ +++ GV T + +F+K VILTTGTFLNG IH+G
Sbjct: 107 LLKLPNLEISQEQASVLIVENDEVKGVKTNLENIYFAKKVILTTGTFLNGLIHVGENKLQ 166
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR G+ ++ +L L+ L L GRLKTGT PR+D ++IDFS +E Q GD +P FS
Sbjct: 167 AGRVGELASVNLGNYLQTLGLKMGRLKTGTCPRVDAKSIDFSVLEIQDGDVNP-KAFSFR 225
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
N +P QL C+I TN TH II++ F +P+F+G+IE +GPRYCPSIEDK+ RF K
Sbjct: 226 SR-NFNPTQLPCYIARTNTTTHEIIKNNFYRAPLFTGQIEGVGPRYCPSIEDKINRFSDK 284
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
+SHH+F+EP+ I EYY NG STSLP+E Q ++++S+ G +NA I R GYAIEYDY P
Sbjct: 285 ESHHLFIEPQTIDATEYYINGFSTSLPYEVQTQMLRSVKGFENAKITRFGYAIEYDYIEP 344
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
LK +LE K+I L+ AGQINGTTGYEEAA+QG +AG+NA+L ++P I RD+AY+
Sbjct: 345 TELKHTLELKKIKNLYCAGQINGTTGYEEAAAQGFMAGINASLSIDMKEPLILRRDEAYI 404
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL+ KG +EPYRMFTSRAE+RL LRE+NA LRL + G+ LG +S + + +
Sbjct: 405 GVLIDDLVVKGTKEPYRMFTSRAEFRLLLREENAILRLGKYGYDLGLLSEQDFTYIQNIA 464
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ K L+ L P+ N E + +I +L ++ + + L L I
Sbjct: 465 NNLQKGLEFLLSKEFTPNNQNNAFLESLGEDKISSIVNLQKIVARASFDIEKLKKLDPI- 523
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
+ T + +++ L + +Y YI Q P N D+ + LS
Sbjct: 524 ----FETMDHYS-LREILN-EAKYYHYISMQKAQVEKMKNLSELKIPENFDFKSVSGLSN 577
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
E +KLN +KP TI AS+ISG+TPAAL +L IY+K
Sbjct: 578 EVVEKLNHHKPPTIFAASQISGITPAALDILQIYIK 613
>UNIPROTKB|Q71VV1 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:265669 "Listeria monocytogenes
serotype 4b str. F2365" [GO:0003674 "molecular_function"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134
GO:GO:0005737 GO:GO:0050660 EMBL:AE017262 GenomeReviews:AE017262_GR
GO:GO:0002098 eggNOG:COG0445 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
HOGENOM:HOG000201060 RefSeq:YP_015388.1 ProteinModelPortal:Q71VV1
STRING:Q71VV1 GeneID:2798073 KEGG:lmf:LMOf2365_2801 PATRIC:20326992
Uniprot:Q71VV1
Length = 632
Score = 1214 (432.4 bits), Expect = 1.7e-123, P = 1.7e-123
Identities = 260/571 (45%), Positives = 361/571 (63%)
Query: 764 VLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 823
V+ +DA+GG M TDK+ IQ R+LN+ KG AVRA RAQ D+ Y+ ++ +E + N+
Sbjct: 61 VVREIDALGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQADKWDYQHEMKHTIEKEENI 120
Query: 824 YLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883
L Q VD L+I+ GV+T G +++KTV++TTGTF G+I +G YS+G
Sbjct: 121 TLRQGLVDRLVIEDGVCKGVITNSGAIYYAKTVVITTGTFSRGEIIVGELRYSSGPNNQQ 180
Query: 884 STTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHP 943
+ L++ L+EL R KTGTPPR+ TID+SK EEQ GD P FS + +
Sbjct: 181 PSVKLSEHLEELGFELRRFKTGTPPRVKSSTIDYSKTEEQPGDDHP-RAFS-FDTVEMLL 238
Query: 944 KQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFL 1003
QL C++T+TNE TH II++ SP+F+ + G RYCPSIEDK+ RF K H IFL
Sbjct: 239 DQLPCWLTYTNETTHEIIQANLHRSPMFTATKKGTGARYCPSIEDKIVRFSDKPRHQIFL 298
Query: 1004 EPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSL 1063
EPEG E Y G+STSLP E Q E++++I G++N ++R GYAIEYD P L SL
Sbjct: 299 EPEGKNTEEVYVQGLSTSLPEEVQREMLRTIPGLENVEMMRVGYAIEYDAVMPDQLWPSL 358
Query: 1064 ETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDL 1123
ETK + GLF AGQINGT+GYEEAA QGL+AG+NAA ++P I GRDQAY+GVL+DDL
Sbjct: 359 ETKLVEGLFTAGQINGTSGYEEAAGQGLMAGINAARKVFAKEPVILGRDQAYIGVLIDDL 418
Query: 1124 ITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKEL 1183
+TKG +EPYR+ TSRAEYRL LR DNADLRLTEIG ++G +S ++++ F K+ I E
Sbjct: 419 VTKGTEEPYRLLTSRAEYRLLLRHDNADLRLTEIGHEIGLISDERYERFLAKQSAIEAEK 478
Query: 1184 QRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNT 1243
+RL+ T I P+ + + +K ++LL P + Y+ + I + + T
Sbjct: 479 ERLQKTRIKPTAEVQAMLKEIGSGELKDGILAADLLRRPEITYDKIAQ---IVSRETFVT 535
Query: 1244 EIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLN 1303
+ +I +Q++IQ++YEGYI + P N+DY I L+ EA +KL
Sbjct: 536 D----EIAEQVEIQIKYEGYIQKSNLQVEKMKRMEDKKIPENIDYDAISGLATEALEKLK 591
Query: 1304 KYKPETIGQASRISGVTPAALTLLLIYLKSG 1334
K +P +I QASRISGV PA +++LL+Y++ G
Sbjct: 592 KIEPLSIAQASRISGVNPADISILLVYIEQG 622
>TAIR|locus:2060326 [details] [associations]
symbol:AT2G13440 species:3702 "Arabidopsis thaliana"
[GO:0002098 "tRNA wobble uridine modification" evidence=IEA]
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0009055 "electron
carrier activity" evidence=IEA] [GO:0016491 "oxidoreductase
activity" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] [GO:0055114 "oxidation-reduction process"
evidence=IEA] [GO:0042744 "hydrogen peroxide catabolic process"
evidence=RCA] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0050660
GO:GO:0002098 eggNOG:COG0445 KO:K03495 OMA:AQMSCNP
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 HOGENOM:HOG000201060
EMBL:AC007294 IPI:IPI00544736 PIR:G84507 RefSeq:NP_178974.1
UniGene:At.27893 ProteinModelPortal:Q9SHS2 SMR:Q9SHS2 STRING:Q9SHS2
PaxDb:Q9SHS2 PRIDE:Q9SHS2 EnsemblPlants:AT2G13440.1 GeneID:815830
KEGG:ath:AT2G13440 TAIR:At2g13440 InParanoid:Q9SHS2
PhylomeDB:Q9SHS2 ProtClustDB:CLSN2683249 ArrayExpress:Q9SHS2
Genevestigator:Q9SHS2 Uniprot:Q9SHS2
Length = 723
Score = 1213 (432.1 bits), Expect = 2.1e-123, P = 2.1e-123
Identities = 251/579 (43%), Positives = 373/579 (64%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
K L+H V DA+GG + D+ +Q RILN S+G AVR+ RAQ D+ Y ++
Sbjct: 122 KSQLVHEV----DALGGDIGKVADRCYLQKRILNVSRGPAVRSLRAQTDKREYATEMKKI 177
Query: 817 LENQLNLYLFQEEVDDLII-KTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSY 875
+++ NL + + V D+I+ K + + GV T G+ F++ +VILTTGTF++GKI +G KS
Sbjct: 178 VDSTENLCIREAMVTDIIVGKNDNVEGVATFFGMNFYAPSVILTTGTFMSGKIWVGKKSM 237
Query: 876 SAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSV 935
AGR G+ ++ L + L++L RLKTGTP R+D+RTIDFS +E Q GD + V FS
Sbjct: 238 PAGRAGESASQGLTENLQKLGFETDRLKTGTPARVDRRTIDFSNLEAQHGD-EEVSWFSF 296
Query: 936 LGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPK 995
+ ++ +Q+ C++T T + TH +IR +P + G +E+ GPRYCPSIEDK+ RF
Sbjct: 297 DPDFHIEREQMCCYLTRTTKITHQLIRDNLHETPTYGGWVEAKGPRYCPSIEDKIVRFKD 356
Query: 996 KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN 1055
K+SH IFLEPEG + E Y G ST LP Q+ L++S+ G++N +++RP YA+EYDY
Sbjct: 357 KESHQIFLEPEGRDVPEIYVQGFSTGLPENLQLPLLRSLPGLENCSMLRPAYAVEYDYLP 416
Query: 1056 PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAY 1115
SL TK+I GLFF+GQINGTTGYEEAA+QG+++G+NAA + + + R+ +Y
Sbjct: 417 AHQCSRSLMTKKIEGLFFSGQINGTTGYEEAAAQGIISGINAARHADGKKHVVLERESSY 476
Query: 1116 LGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKK 1175
+G L+DDL+TK ++EPYRM TSR+E+RL LR DNAD RLT +G +LG + ++WK++++K
Sbjct: 477 IGTLIDDLVTKDLREPYRMLTSRSEHRLLLRFDNADSRLTPLGRELGLIDDRRWKLYQEK 536
Query: 1176 REIITKELQRLKDTWINPSILN-TGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKG 1234
+ I++E +RLK I+ ++ + E V + +K +L +LL P+++Y L G
Sbjct: 537 QARISEEKKRLKTVKISVAVGDLAAEVSSVSSQPVKESATLESLLKKPHIHYKLLEK-HG 595
Query: 1235 INGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSL 1294
+ L E K ++I ++YEG+I+RQ P +LDY + +L
Sbjct: 596 FGNETLSRME------KDCVEIDIKYEGFIVRQQNQLQQMVHQQHRRLPDDLDYYSMTTL 649
Query: 1295 SIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
S E R+KL+K +PETIGQASR+ GV+PA +T LLI L+S
Sbjct: 650 SHEGREKLSKVRPETIGQASRVGGVSPADITALLITLES 688
>UNIPROTKB|Q5LWF3 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:YP_165274.1 ProteinModelPortal:Q5LWF3 GeneID:3194636
KEGG:sil:SPO0001 PATRIC:23373231 Uniprot:Q5LWF3
Length = 622
Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
Identities = 262/580 (45%), Positives = 360/580 (62%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+ G+M DK+GIQFR+LN KG AV+ RAQ DR LY+ A++
Sbjct: 55 KGHLVREI----DALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKLYRLAMQEE 110
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
+ N+ L + + EV D ++ +++ GVV G + S+ VILT+GTFL G IHIG S
Sbjct: 111 MRNRPGLTIVEGEVTDFRMQGDRVAGVVLADGSEIASQAVILTSGTFLRGIIHIGDVSRP 170
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + LA+RL L GRLKTGTPPR+D RTID+S +E Q GD DPV +FS L
Sbjct: 171 GGRMGDRPSVPLAERLDGFALPMGRLKTGTPPRLDGRTIDWSILERQDGDDDPV-LFSFL 229
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
+ +Q++C ITHTN +TH IIR S ++ G IE +GPRYCPSIEDK+ RF K
Sbjct: 230 SK-GAYARQIACGITHTNAQTHEIIRKNLSRSAMYGGHIEGVGPRYCPSIEDKIVRFADK 288
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IFLEPEG+ + YPNGISTSLP + Q + V+SI G++ I++PGYAIEYDY +P
Sbjct: 289 DSHQIFLEPEGLEDHTVYPNGISTSLPVDVQEDYVRSIRGLEQVEILQPGYAIEYDYVDP 348
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIP-GRDQAY 1115
L S L + GL+ AGQINGTTGYEEAA+QG++AGLNAA +P +P R +Y
Sbjct: 349 RALTSQLSLPNVPGLYLAGQINGTTGYEEAAAQGMVAGLNAATAILGHEP-VPFSRANSY 407
Query: 1116 LGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKK 1175
+GV++DDL T+G+ EPYRMFTSRAE+RL+LR DNAD RLT +G +LGCV ++ +F +K
Sbjct: 408 IGVMIDDLTTRGVAEPYRMFTSRAEFRLSLRADNADQRLTPLGLELGCVGDERRDVFARK 467
Query: 1176 REIITKELQRLKDTWINPS-ILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKG 1234
E + L + +P I G + G R ++ +++ L +P+V ++ L L
Sbjct: 468 AEKLATASALLDQSSFSPKEIATAGITISQDGNR-RNGFAV---LAFPDVRFDDLVPLI- 522
Query: 1235 INGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSL 1294
L +T+ + + Q++ Y YI RQ P + ++ + L
Sbjct: 523 ---PELADTDA---ETRAQVERDALYANYIARQERDVEAMKRDEALVIPIDFNFSALDGL 576
Query: 1295 SIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSG 1334
S E +QKL +PE I QA R+ G+TPAAL L+L L+ G
Sbjct: 577 SNELKQKLTSARPENIAQAGRVEGMTPAALALILARLRRG 616
>TIGR_CMR|SPO_0001 [details] [associations]
symbol:SPO_0001 "glucose inhibited division protein A"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 GO:GO:0005737 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0050660 GO:GO:0002098 eggNOG:COG0445 HOGENOM:HOG000201059
KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192 InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280
PROSITE:PS01281 RefSeq:YP_165274.1 ProteinModelPortal:Q5LWF3
GeneID:3194636 KEGG:sil:SPO0001 PATRIC:23373231 Uniprot:Q5LWF3
Length = 622
Score = 1201 (427.8 bits), Expect = 4.0e-122, P = 4.0e-122
Identities = 262/580 (45%), Positives = 360/580 (62%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+ G+M DK+GIQFR+LN KG AV+ RAQ DR LY+ A++
Sbjct: 55 KGHLVREI----DALDGVMGRVADKAGIQFRLLNRRKGPAVQGPRAQADRKLYRLAMQEE 110
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
+ N+ L + + EV D ++ +++ GVV G + S+ VILT+GTFL G IHIG S
Sbjct: 111 MRNRPGLTIVEGEVTDFRMQGDRVAGVVLADGSEIASQAVILTSGTFLRGIIHIGDVSRP 170
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + LA+RL L GRLKTGTPPR+D RTID+S +E Q GD DPV +FS L
Sbjct: 171 GGRMGDRPSVPLAERLDGFALPMGRLKTGTPPRLDGRTIDWSILERQDGDDDPV-LFSFL 229
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
+ +Q++C ITHTN +TH IIR S ++ G IE +GPRYCPSIEDK+ RF K
Sbjct: 230 SK-GAYARQIACGITHTNAQTHEIIRKNLSRSAMYGGHIEGVGPRYCPSIEDKIVRFADK 288
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
SH IFLEPEG+ + YPNGISTSLP + Q + V+SI G++ I++PGYAIEYDY +P
Sbjct: 289 DSHQIFLEPEGLEDHTVYPNGISTSLPVDVQEDYVRSIRGLEQVEILQPGYAIEYDYVDP 348
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIP-GRDQAY 1115
L S L + GL+ AGQINGTTGYEEAA+QG++AGLNAA +P +P R +Y
Sbjct: 349 RALTSQLSLPNVPGLYLAGQINGTTGYEEAAAQGMVAGLNAATAILGHEP-VPFSRANSY 407
Query: 1116 LGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKK 1175
+GV++DDL T+G+ EPYRMFTSRAE+RL+LR DNAD RLT +G +LGCV ++ +F +K
Sbjct: 408 IGVMIDDLTTRGVAEPYRMFTSRAEFRLSLRADNADQRLTPLGLELGCVGDERRDVFARK 467
Query: 1176 REIITKELQRLKDTWINPS-ILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKG 1234
E + L + +P I G + G R ++ +++ L +P+V ++ L L
Sbjct: 468 AEKLATASALLDQSSFSPKEIATAGITISQDGNR-RNGFAV---LAFPDVRFDDLVPLI- 522
Query: 1235 INGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSL 1294
L +T+ + + Q++ Y YI RQ P + ++ + L
Sbjct: 523 ---PELADTDA---ETRAQVERDALYANYIARQERDVEAMKRDEALVIPIDFNFSALDGL 576
Query: 1295 SIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSG 1334
S E +QKL +PE I QA R+ G+TPAAL L+L L+ G
Sbjct: 577 SNELKQKLTSARPENIAQAGRVEGMTPAALALILARLRRG 616
>UNIPROTKB|Q81JH3 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:1392 "Bacillus anthracis"
[GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_847878.1 RefSeq:YP_022418.1 RefSeq:YP_031573.1
ProteinModelPortal:Q81JH3 DNASU:1085502
EnsemblBacteria:EBBACT00000008501 EnsemblBacteria:EBBACT00000014142
EnsemblBacteria:EBBACT00000024186 GeneID:1085502 GeneID:2815441
GeneID:2848384 KEGG:ban:BA_5733 KEGG:bar:GBAA_5733 KEGG:bat:BAS5336
BioCyc:BANT260799:GJAJ-5413-MONOMER
BioCyc:BANT261594:GJ7F-5589-MONOMER Uniprot:Q81JH3
Length = 629
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 253/571 (44%), Positives = 360/571 (63%)
Query: 764 VLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 823
V+ +DA+GG M DK+ IQ R+LN+ KG AVRA RAQ D+ Y+ ++ +E NL
Sbjct: 60 VVREIDALGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNL 119
Query: 824 YLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883
LFQ V+ LI++ + GV+T+ G ++ +KTV++TTGTFL G+I +G YS+G
Sbjct: 120 TLFQGMVERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQ 179
Query: 884 STTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHP 943
+ +L++ L+EL R KTGTPPR++ TID+SK E Q GD P FS
Sbjct: 180 PSITLSEHLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKP-RAFS-FETTKFIM 237
Query: 944 KQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFL 1003
Q+ C++T+T+ +TH +I S ++SG I+ GPRYCPSIEDKV RF K H IFL
Sbjct: 238 DQIPCWLTYTSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFL 297
Query: 1004 EPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSL 1063
EPEG E Y G+STSLP + Q +++++I G++N ++R GYAIEYD P L +L
Sbjct: 298 EPEGRNTQEVYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTL 357
Query: 1064 ETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDL 1123
ETK+I L+ AGQINGT+GYEEAA QGL+AG+NAA S + I GR+ AY+GVL+DDL
Sbjct: 358 ETKKIKNLYTAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDL 417
Query: 1124 ITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKEL 1183
+TKG EPYR+ TSRAEYRL LR DNADLRLTE+G ++G ++ ++++ F K+ I +E
Sbjct: 418 VTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEK 477
Query: 1184 QRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNT 1243
+RL I P + G +K S+LL P + Y + L + +
Sbjct: 478 ERLSSIIIKPRPEVQELIRNIGGSELKDGIRASDLLRRPEMTYEHIHLL--VPSE----V 531
Query: 1244 EIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLN 1303
E+ +++K+Q++IQ++YEGYI + P ++DY I SL+ EARQKL
Sbjct: 532 EL-SDEVKEQVEIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLK 590
Query: 1304 KYKPETIGQASRISGVTPAALTLLLIYLKSG 1334
+P ++GQASRISGV PA +++LL+Y++ G
Sbjct: 591 DVRPLSMGQASRISGVNPADISILLVYIEQG 621
>TIGR_CMR|BA_5733 [details] [associations]
symbol:BA_5733 "glucose-inhibited division protein A"
species:198094 "Bacillus anthracis str. Ames" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_847878.1 RefSeq:YP_022418.1 RefSeq:YP_031573.1
ProteinModelPortal:Q81JH3 DNASU:1085502
EnsemblBacteria:EBBACT00000008501 EnsemblBacteria:EBBACT00000014142
EnsemblBacteria:EBBACT00000024186 GeneID:1085502 GeneID:2815441
GeneID:2848384 KEGG:ban:BA_5733 KEGG:bar:GBAA_5733 KEGG:bat:BAS5336
BioCyc:BANT260799:GJAJ-5413-MONOMER
BioCyc:BANT261594:GJ7F-5589-MONOMER Uniprot:Q81JH3
Length = 629
Score = 1179 (420.1 bits), Expect = 8.5e-120, P = 8.5e-120
Identities = 253/571 (44%), Positives = 360/571 (63%)
Query: 764 VLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 823
V+ +DA+GG M DK+ IQ R+LN+ KG AVRA RAQ D+ Y+ ++ +E NL
Sbjct: 60 VVREIDALGGEMGRNIDKTHIQMRMLNTGKGPAVRALRAQADKFSYQHELKKTIEETPNL 119
Query: 824 YLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDF 883
LFQ V+ LI++ + GV+T+ G ++ +KTV++TTGTFL G+I +G YS+G
Sbjct: 120 TLFQGMVERLIVEDGECKGVITQAGAEYTAKTVVITTGTFLRGEIIMGDLKYSSGPNNQQ 179
Query: 884 STTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHP 943
+ +L++ L+EL R KTGTPPR++ TID+SK E Q GD P FS
Sbjct: 180 PSITLSEHLEELGFDLVRFKTGTPPRVNSNTIDYSKTEIQPGDDKP-RAFS-FETTKFIM 237
Query: 944 KQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFL 1003
Q+ C++T+T+ +TH +I S ++SG I+ GPRYCPSIEDKV RF K H IFL
Sbjct: 238 DQIPCWLTYTSTETHRLIDENLHRSAMYSGMIKGTGPRYCPSIEDKVVRFNDKPRHQIFL 297
Query: 1004 EPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSL 1063
EPEG E Y G+STSLP + Q +++++I G++N ++R GYAIEYD P L +L
Sbjct: 298 EPEGRNTQEVYVQGLSTSLPEDVQRDMLRTIPGLENVEMMRTGYAIEYDAIVPTQLWPTL 357
Query: 1064 ETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDL 1123
ETK+I L+ AGQINGT+GYEEAA QGL+AG+NAA S + I GR+ AY+GVL+DDL
Sbjct: 358 ETKKIKNLYTAGQINGTSGYEEAAGQGLMAGINAACRSLGKKEVILGREDAYIGVLIDDL 417
Query: 1124 ITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKEL 1183
+TKG EPYR+ TSRAEYRL LR DNADLRLTE+G ++G ++ ++++ F K+ I +E
Sbjct: 418 VTKGTNEPYRLLTSRAEYRLLLRHDNADLRLTEVGHEIGLITEERYERFTNKKLQIEQEK 477
Query: 1184 QRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNT 1243
+RL I P + G +K S+LL P + Y + L + +
Sbjct: 478 ERLSSIIIKPRPEVQELIRNIGGSELKDGIRASDLLRRPEMTYEHIHLL--VPSE----V 531
Query: 1244 EIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLN 1303
E+ +++K+Q++IQ++YEGYI + P ++DY I SL+ EARQKL
Sbjct: 532 EL-SDEVKEQVEIQIKYEGYIEKSLQQVERMKKMENKKIPVDIDYDAISSLASEARQKLK 590
Query: 1304 KYKPETIGQASRISGVTPAALTLLLIYLKSG 1334
+P ++GQASRISGV PA +++LL+Y++ G
Sbjct: 591 DVRPLSMGQASRISGVNPADISILLVYIEQG 621
>TIGR_CMR|SO_3471 [details] [associations]
symbol:SO_3471 "serine hydroxymethyltransferase"
species:211586 "Shewanella oneidensis MR-1" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 KO:K00600 OMA:AICAKFP GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 ProtClustDB:PRK00011 HOGENOM:HOG000239403
RefSeq:NP_719020.1 ProteinModelPortal:Q8EBN8 SMR:Q8EBN8
GeneID:1171147 KEGG:son:SO_3471 PATRIC:23526638 Uniprot:Q8EBN8
Length = 417
Score = 1176 (419.0 bits), Expect = 1.8e-119, P = 1.8e-119
Identities = 225/379 (59%), Positives = 289/379 (76%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M+ K+ N++ DP+++ I E RQ +IELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 1 MLKKDMNIADYDPELFNAIQNETLRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+++D++E +AI R K++F A ANVQPHSGSQAN AV+ ++L PGDT++GM+
Sbjct: 61 GKRYYGGCEYVDVVETLAIERAKQLFGATYANVQPHSGSQANSAVYMALLKPGDTVLGMN 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY 180
L GGHLTHG +N SG+ +N I YG+++ KIDY ++E LA ++KPK++I G SAYS
Sbjct: 121 LAHGGHLTHGSPVNFSGRLYNIIPYGIDESGKIDYDEMERLAVEHKPKMMIGGFSAYSGI 180
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
+D+ R IA I +Y VDMAH AGLIAAG YPNPVP A +TSTTHK+L GPRGG IL
Sbjct: 181 VDWARMREIADKIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTSTTHKTLAGPRGGIIL 240
Query: 241 M----KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296
++ YKK+ NSAVFPG QGGPLMHVIA KAVAFKE L+P+FK YQ+QVV NAK +
Sbjct: 241 SAADDEELYKKL-NSAVFPGGQGGPLMHVIAGKAVAFKEALEPEFKTYQQQVVNNAKAMV 299
Query: 297 KILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFT 356
++ +RG +IVSGGT +H++LVDL + +TGK A++ L SANI NKNS+PNDP P+ T
Sbjct: 300 EVFLERGYKIVSGGTSNHLMLVDLIGRDLTGKEADAALGSANITVNKNSVPNDPRSPFVT 359
Query: 357 SGIRLGSSAITTRGFSELE 375
SG+R+G+ AIT RGF E E
Sbjct: 360 SGVRIGTPAITRRGFKEAE 378
>TIGR_CMR|GSU_1607 [details] [associations]
symbol:GSU_1607 "serine hydroxymethyltransferase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 ProtClustDB:PRK00011 HOGENOM:HOG000239405
RefSeq:NP_952658.1 ProteinModelPortal:Q74CR5 SMR:Q74CR5
PRIDE:Q74CR5 GeneID:2685603 KEGG:gsu:GSU1607 PATRIC:22026061
OMA:IAKLQWA BioCyc:GSUL243231:GH27-1559-MONOMER Uniprot:Q74CR5
Length = 415
Score = 1172 (417.6 bits), Expect = 4.7e-119, P = 4.7e-119
Identities = 218/373 (58%), Positives = 288/373 (77%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L DP++ E I E +RQ N+ELIASEN+ S AV+EAQG+++TNKYAEGYPGKRYYGG
Sbjct: 4 LETFDPQVAEAIRHETERQEYNLELIASENFVSEAVLEAQGSVMTNKYAEGYPGKRYYGG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C +D++E +AI R K++F A+ ANVQPHSGSQAN AV+FSVL PGDTI+GM+L GGHL
Sbjct: 64 CHHVDVVENLAIERAKELFGADHANVQPHSGSQANMAVYFSVLKPGDTILGMNLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +N SG++FN + YG++++ E ID+ +VE LA ++KPK+I+ GASAY + IDF F
Sbjct: 124 THGSPVNFSGRFFNVVPYGVSQETETIDFNEVERLALEHKPKMIVVGASAYPRTIDFAAF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + + MVDMAH AGL+AAG +P+PVP+A+F+T+TTHK+LRGPRGG IL +++Y
Sbjct: 184 RIIADKVGAVIMVDMAHIAGLVAAGLHPSPVPYAEFVTTTTHKTLRGPRGGMILCREEYA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K +NS +FPGIQGGPLMHVIAAKAVA KE L+P+FK YQ Q+VKNAK L+ L +RG R+
Sbjct: 244 KTLNSNIFPGIQGGPLMHVIAAKAVALKEALQPEFKAYQAQIVKNAKALADELVKRGFRL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
VSGGT +H++LV+L ++TGK+AE L+ A I NKN++P + P+ TSG R+G+ A
Sbjct: 304 VSGGTDNHLMLVNLTGTELTGKVAEESLDKAGITVNKNTVPFETRSPFVTSGFRIGTPAA 363
Query: 367 TTRGFSELEIIKV 379
TT G E E+ V
Sbjct: 364 TTHGLKEAEMADV 376
>TIGR_CMR|CPS_2477 [details] [associations]
symbol:CPS_2477 "serine hydroxymethyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK00011
RefSeq:YP_269193.1 ProteinModelPortal:Q481S6 SMR:Q481S6
STRING:Q481S6 PRIDE:Q481S6 GeneID:3520009 KEGG:cps:CPS_2477
PATRIC:21468023 BioCyc:CPSY167879:GI48-2540-MONOMER Uniprot:Q481S6
Length = 417
Score = 1168 (416.2 bits), Expect = 1.3e-118, P = 1.3e-118
Identities = 219/374 (58%), Positives = 293/374 (78%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M KN+ ++ D IW+ + +E +RQ +++ELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 1 MFYKNDQIAGFDDSIWQAMEQEDKRQQDHVELIASENYTSARVMQAQGSQLTNKYAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+ +D+IE++AI+R K++F A+ ANVQPHSGSQAN AVF ++L PG+T++GMS
Sbjct: 61 GKRYYGGCEHVDVIEQLAIDRAKELFGADYANVQPHSGSQANAAVFMALLKPGETVLGMS 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKE-KIDYKKVEYLAKKNKPKLIIAGASAYSQ 179
L GGHLTHG ++ SGK +N++ YGLN+ +IDY++VE LAK+++PK+IIAG SAYS+
Sbjct: 121 LAHGGHLTHGSKVSFSGKIYNAVQYGLNEATGEIDYEEVERLAKEHQPKMIIAGFSAYSR 180
Query: 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFI 239
+D++RF IA +I ++ VDMAH AGL+AAG YPNPVP AD +T+TTHK+LRGPRGG I
Sbjct: 181 VVDWQRFRDIADSIGAWLFVDMAHVAGLVAAGLYPNPVPIADVVTTTTHKTLRGPRGGLI 240
Query: 240 LMKK--KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297
L K+ + K +NSAVFP QGGPLMHVIAAKA+ FKE L + YQ+QV+ NA+ ++K
Sbjct: 241 LAKQNDELAKKLNSAVFPAGQGGPLMHVIAAKAICFKEALGEGYVEYQQQVIDNAREMAK 300
Query: 298 ILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTS 357
RG +VSGGT +H+ L+DL +K ITGK A++ L ANI NKNS+PNDP+ P+ TS
Sbjct: 301 TFQTRGYNVVSGGTDNHLFLLDLIDKGITGKDADAALGRANITVNKNSVPNDPQSPFVTS 360
Query: 358 GIRLGSSAITTRGF 371
G+R+G+ AIT+RGF
Sbjct: 361 GLRIGTPAITSRGF 374
>UNIPROTKB|P0A825 [details] [associations]
symbol:glyA species:83333 "Escherichia coli K-12"
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=IEA;IDA;IMP] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0035999
"tetrahydrofolate interconversion" evidence=IEA] [GO:0006546
"glycine catabolic process" evidence=IMP] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006730
"one-carbon metabolic process" evidence=IEA] [GO:0006565 "L-serine
catabolic process" evidence=IDA] [GO:0019264 "glycine biosynthetic
process from serine" evidence=IDA;IMP] [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA;IDA] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005829
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0016020 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0008270 GO:GO:0035999 GO:GO:0006546 GO:GO:0006565
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
PANTHER:PTHR11680 ProtClustDB:PRK00011 OMA:GKIDYED EMBL:V00283
EMBL:J01620 PIR:A00559 RefSeq:NP_417046.1 RefSeq:YP_490779.1
PDB:1DFO PDB:1EQB PDB:3G8M PDBsum:1DFO PDBsum:1EQB PDBsum:3G8M
ProteinModelPortal:P0A825 SMR:P0A825 DIP:DIP-36205N IntAct:P0A825
MINT:MINT-7293373 SWISS-2DPAGE:P0A825 PaxDb:P0A825 PRIDE:P0A825
EnsemblBacteria:EBESCT00000003405 EnsemblBacteria:EBESCT00000017377
GeneID:12932320 GeneID:947022 KEGG:ecj:Y75_p2504 KEGG:eco:b2551
PATRIC:32120501 EchoBASE:EB0403 EcoGene:EG10408
BioCyc:EcoCyc:GLYOHMETRANS-MONOMER BioCyc:ECOL316407:JW2535-MONOMER
BioCyc:MetaCyc:GLYOHMETRANS-MONOMER EvolutionaryTrace:P0A825
Genevestigator:P0A825 GO:GO:0019264 Uniprot:P0A825
Length = 417
Score = 1165 (415.2 bits), Expect = 2.6e-118, P = 2.6e-118
Identities = 221/379 (58%), Positives = 291/379 (76%)
Query: 2 IIKNE-NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
++K E N++ D ++W+ + +EK RQ +IELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 1 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+++D++E++AI+R K++F A+ ANVQPHSGSQAN AV+ ++L PGDT++GM+
Sbjct: 61 GKRYYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMN 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY 180
L GGHLTHG +N SGK +N + YG++ IDY +E AK++KPK+II G SAYS
Sbjct: 121 LAHGGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGV 180
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
+D+ + IA +I +Y VDMAH AGL+AAG YPNPVP A +T+TTHK+L GPRGG IL
Sbjct: 181 VDWAKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 240
Query: 241 MK----KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILS 296
K + YKK+ NSAVFPG QGGPLMHVIA KAVA KE ++P+FK YQ+QV KNAK +
Sbjct: 241 AKGGSEELYKKL-NSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMV 299
Query: 297 KILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFT 356
++ +RG ++VSGGT +H+ LVDL +K +TGK A++ L ANI NKNS+PNDP+ P+ T
Sbjct: 300 EVFLERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVT 359
Query: 357 SGIRLGSSAITTRGFSELE 375
SGIR+G+ AIT RGF E E
Sbjct: 360 SGIRVGTPAITRRGFKEAE 378
>UNIPROTKB|Q9KTG1 [details] [associations]
symbol:glyA1 "Serine hydroxymethyltransferase 1"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=ISS] [GO:0006545 "glycine biosynthetic process"
evidence=ISS] [GO:0006730 "one-carbon metabolic process"
evidence=ISS] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288
GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006730 GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 ProtClustDB:PRK00011 PIR:H82258
RefSeq:NP_230588.2 ProteinModelPortal:Q9KTG1 SMR:Q9KTG1
PRIDE:Q9KTG1 DNASU:2614161 GeneID:2614161 KEGG:vch:VC0941
PATRIC:20080986 OMA:GKIDYED Uniprot:Q9KTG1
Length = 416
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 223/376 (59%), Positives = 290/376 (77%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M+ ++ N++ DP+++ I +E RQ +IELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 1 MLKRDMNIADYDPELYAAIQEETLRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+++D E +AI+R ++F E ANVQPHSGSQAN AV+ ++LNPGDT++GMS
Sbjct: 61 GKRYYGGCEYVDKAEALAIDRACQLFGCEYANVQPHSGSQANSAVYMALLNPGDTVLGMS 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY 180
L GGHLTHG +N SGK +N I YG+++ +I+Y ++E LA ++KPK+II G SAYSQ
Sbjct: 121 LAHGGHLTHGSPVNFSGKHYNVIPYGIDEAGQINYDEMEALALEHKPKMIIGGFSAYSQI 180
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
+D++R IA + +Y VDMAH AGLIAAG YP+PVPFA +T+TTHK+L GPRGG IL
Sbjct: 181 VDWKRMREIADKVGAYLFVDMAHVAGLIAAGVYPSPVPFAHVVTTTTHKTLAGPRGGLIL 240
Query: 241 M---KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297
++ YKK+ NSAVFPG QGGPLMHVIAAKAVAFKE ++P+FK YQ +VVKNAK +
Sbjct: 241 SNAGEEMYKKL-NSAVFPGGQGGPLMHVIAAKAVAFKEAMEPEFKEYQARVVKNAKAMVA 299
Query: 298 ILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTS 357
+RG +IVS T++H+ LVDL +K ITGK A++ L +ANI NKNS+PNDP P+ TS
Sbjct: 300 QFQERGYKIVSNSTENHLFLVDLIDKNITGKEADAALGAANITVNKNSVPNDPRSPFVTS 359
Query: 358 GIRLGSSAITTRGFSE 373
GIR+G+ AIT RGF+E
Sbjct: 360 GIRVGTPAITRRGFTE 375
>TIGR_CMR|VC_0941 [details] [associations]
symbol:VC_0941 "serine hydroxymethyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006730 GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 ProtClustDB:PRK00011 PIR:H82258
RefSeq:NP_230588.2 ProteinModelPortal:Q9KTG1 SMR:Q9KTG1
PRIDE:Q9KTG1 DNASU:2614161 GeneID:2614161 KEGG:vch:VC0941
PATRIC:20080986 OMA:GKIDYED Uniprot:Q9KTG1
Length = 416
Score = 1161 (413.8 bits), Expect = 6.9e-118, P = 6.9e-118
Identities = 223/376 (59%), Positives = 290/376 (77%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M+ ++ N++ DP+++ I +E RQ +IELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 1 MLKRDMNIADYDPELYAAIQEETLRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+++D E +AI+R ++F E ANVQPHSGSQAN AV+ ++LNPGDT++GMS
Sbjct: 61 GKRYYGGCEYVDKAEALAIDRACQLFGCEYANVQPHSGSQANSAVYMALLNPGDTVLGMS 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY 180
L GGHLTHG +N SGK +N I YG+++ +I+Y ++E LA ++KPK+II G SAYSQ
Sbjct: 121 LAHGGHLTHGSPVNFSGKHYNVIPYGIDEAGQINYDEMEALALEHKPKMIIGGFSAYSQI 180
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
+D++R IA + +Y VDMAH AGLIAAG YP+PVPFA +T+TTHK+L GPRGG IL
Sbjct: 181 VDWKRMREIADKVGAYLFVDMAHVAGLIAAGVYPSPVPFAHVVTTTTHKTLAGPRGGLIL 240
Query: 241 M---KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297
++ YKK+ NSAVFPG QGGPLMHVIAAKAVAFKE ++P+FK YQ +VVKNAK +
Sbjct: 241 SNAGEEMYKKL-NSAVFPGGQGGPLMHVIAAKAVAFKEAMEPEFKEYQARVVKNAKAMVA 299
Query: 298 ILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTS 357
+RG +IVS T++H+ LVDL +K ITGK A++ L +ANI NKNS+PNDP P+ TS
Sbjct: 300 QFQERGYKIVSNSTENHLFLVDLIDKNITGKEADAALGAANITVNKNSVPNDPRSPFVTS 359
Query: 358 GIRLGSSAITTRGFSE 373
GIR+G+ AIT RGF+E
Sbjct: 360 GIRVGTPAITRRGFTE 375
>TIGR_CMR|CPS_4031 [details] [associations]
symbol:CPS_4031 "serine hydroxymethyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK00011
RefSeq:YP_270689.1 ProteinModelPortal:Q47WY2 SMR:Q47WY2
STRING:Q47WY2 GeneID:3519081 KEGG:cps:CPS_4031 PATRIC:21470941
OMA:VKINAQV BioCyc:CPSY167879:GI48-4044-MONOMER Uniprot:Q47WY2
Length = 417
Score = 1159 (413.0 bits), Expect = 1.1e-117, P = 1.1e-117
Identities = 218/374 (58%), Positives = 291/374 (77%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M KN+ ++ D IW+ + +E +RQ +++ELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 1 MFYKNDQIAGFDDSIWQAMEQEDKRQQDHVELIASENYTSARVMQAQGSQLTNKYAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+ +D+IE++AI+R K++F A+ ANVQPHSGSQAN AVF ++L PG+T++GMS
Sbjct: 61 GKRYYGGCEHVDVIEQLAIDRAKELFGADYANVQPHSGSQANAAVFMALLKPGETVLGMS 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKE-KIDYKKVEYLAKKNKPKLIIAGASAYSQ 179
L GGHLTHG ++ SGK +N++ YGLN+ +IDY +V LAK+++PK+IIAG SAYS+
Sbjct: 121 LAHGGHLTHGSKVSFSGKIYNAVQYGLNEVTGEIDYDEVARLAKEHQPKMIIAGFSAYSR 180
Query: 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFI 239
+D++RF IA +I ++ VDMAH AGL+AAG YPNPVP AD +T+TTHK+LRGPRGG I
Sbjct: 181 VVDWQRFRDIADSIGAWLFVDMAHVAGLVAAGLYPNPVPIADVVTTTTHKTLRGPRGGLI 240
Query: 240 LMKK--KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297
L K+ + K +NSAVFP QGGPLMHVIAAKA+ FKE L + YQ+QV+ NA+ ++K
Sbjct: 241 LAKQNDELAKKLNSAVFPAGQGGPLMHVIAAKAICFKEALGEGYVEYQQQVIDNAREMAK 300
Query: 298 ILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTS 357
RG +VSGGT +H+ L+DL +K ITGK A++ L ANI NKNS+PNDP+ P+ TS
Sbjct: 301 TFQTRGYNVVSGGTDNHLFLLDLIDKGITGKDADAALGRANITVNKNSVPNDPQSPFVTS 360
Query: 358 GIRLGSSAITTRGF 371
G+R+G+ AIT+RGF
Sbjct: 361 GLRIGTPAITSRGF 374
>UNIPROTKB|Q2GHA4 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:205920 "Ehrlichia chaffeensis
str. Arkansas" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00129
InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737
GO:GO:0050660 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:YP_507179.1 ProteinModelPortal:Q2GHA4 STRING:Q2GHA4
PRIDE:Q2GHA4 GeneID:3927161 KEGG:ech:ECH_0359 PATRIC:20576211
BioCyc:ECHA205920:GJNR-360-MONOMER Uniprot:Q2GHA4
Length = 625
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 255/577 (44%), Positives = 368/577 (63%)
Query: 764 VLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 823
V+ +DA+ G+M DK+ I ILN SKG AV RAQ DR +YK ++ + N NL
Sbjct: 56 VVREVDALDGLMGKVIDKASINSSILNRSKGPAVWGPRAQADRKIYKNTMQDIILNYPNL 115
Query: 824 YLFQEEVDDLII--KTNK--ILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR 879
+ + V+D I K K + V+T ++K +ILTTGTFL G IHIG + AGR
Sbjct: 116 TVLEASVEDFTITEKDEKFTVETVITSDQQVIYTKKLILTTGTFLQGTIHIGSYNTPAGR 175
Query: 880 FGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLG-N 938
FG+ + LAK L++ GRL+TGTPPR+D +I+FS ++EQ GD +P P FS + +
Sbjct: 176 FGEQPSIGLAKTLEKYNFKLGRLRTGTPPRLDINSINFSGLQEQKGDSEPSP-FSYMSQS 234
Query: 939 INLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESI-GPRYCPSIEDKVYRFPKKK 997
I+L P Q+SC++T TN +TH +I++ + S ++ I PRYCPSIE+KV RF ++
Sbjct: 235 IDL-P-QISCYLTATNTRTHEVIKNNLHRAAA-SNSLKDIKAPRYCPSIEEKVRRFSERN 291
Query: 998 SHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPC 1057
SH +FLEPEG+ N YPNGI+TS P + Q E++++I G++ NIIR GY++EY++ +P
Sbjct: 292 SHQVFLEPEGLDSNIIYPNGITTSSPLDVQYEMLKTIPGLEKVNIIRSGYSVEYNFIDPR 351
Query: 1058 NLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDR-DPWIPGRDQAYL 1116
L +LETK+I GL+FAGQINGTTGYEEAA QG++AG+NAAL + +P+I R AY+
Sbjct: 352 ELYHTLETKKISGLYFAGQINGTTGYEEAAGQGIIAGINAALSLNSKYEPFILKRSDAYI 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFE-KK 1175
GV++DDL+T G EPYR+FTSRAEYRL LR DNADLRLTE+G+++ VS K++ I + KK
Sbjct: 412 GVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNADLRLTELGYQISVVSSKRYTILKNKK 471
Query: 1176 REIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGI 1235
+EIIT LK+ P+ L + + ++ S+ +LL PN+N ++ +
Sbjct: 472 QEIITLT-NILKNIITTPTQL-ARHNIPISQDGVRR--SIFDLLGHPNINMEIVSRI--C 525
Query: 1236 NGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLS 1295
N +N +++ +Q+ I+ +Y Y RQ PHN+++ +I LS
Sbjct: 526 NTVKEFN-----KNVAEQVAIEAKYAPYFDRQDADIKAFLEEENTHIPHNIEFSQIHGLS 580
Query: 1296 IEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
E ++KL KP +IG A RI G+TPAA+T +LIYL+
Sbjct: 581 KEIQEKLEYIKPLSIGSARRIPGITPAAITNILIYLR 617
>TIGR_CMR|ECH_0359 [details] [associations]
symbol:ECH_0359 "glucose inhibited division protein A"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0002098 eggNOG:COG0445
HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:YP_507179.1 ProteinModelPortal:Q2GHA4 STRING:Q2GHA4
PRIDE:Q2GHA4 GeneID:3927161 KEGG:ech:ECH_0359 PATRIC:20576211
BioCyc:ECHA205920:GJNR-360-MONOMER Uniprot:Q2GHA4
Length = 625
Score = 1157 (412.3 bits), Expect = 1.8e-117, P = 1.8e-117
Identities = 255/577 (44%), Positives = 368/577 (63%)
Query: 764 VLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 823
V+ +DA+ G+M DK+ I ILN SKG AV RAQ DR +YK ++ + N NL
Sbjct: 56 VVREVDALDGLMGKVIDKASINSSILNRSKGPAVWGPRAQADRKIYKNTMQDIILNYPNL 115
Query: 824 YLFQEEVDDLII--KTNK--ILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR 879
+ + V+D I K K + V+T ++K +ILTTGTFL G IHIG + AGR
Sbjct: 116 TVLEASVEDFTITEKDEKFTVETVITSDQQVIYTKKLILTTGTFLQGTIHIGSYNTPAGR 175
Query: 880 FGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLG-N 938
FG+ + LAK L++ GRL+TGTPPR+D +I+FS ++EQ GD +P P FS + +
Sbjct: 176 FGEQPSIGLAKTLEKYNFKLGRLRTGTPPRLDINSINFSGLQEQKGDSEPSP-FSYMSQS 234
Query: 939 INLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESI-GPRYCPSIEDKVYRFPKKK 997
I+L P Q+SC++T TN +TH +I++ + S ++ I PRYCPSIE+KV RF ++
Sbjct: 235 IDL-P-QISCYLTATNTRTHEVIKNNLHRAAA-SNSLKDIKAPRYCPSIEEKVRRFSERN 291
Query: 998 SHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPC 1057
SH +FLEPEG+ N YPNGI+TS P + Q E++++I G++ NIIR GY++EY++ +P
Sbjct: 292 SHQVFLEPEGLDSNIIYPNGITTSSPLDVQYEMLKTIPGLEKVNIIRSGYSVEYNFIDPR 351
Query: 1058 NLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDR-DPWIPGRDQAYL 1116
L +LETK+I GL+FAGQINGTTGYEEAA QG++AG+NAAL + +P+I R AY+
Sbjct: 352 ELYHTLETKKISGLYFAGQINGTTGYEEAAGQGIIAGINAALSLNSKYEPFILKRSDAYI 411
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFE-KK 1175
GV++DDL+T G EPYR+FTSRAEYRL LR DNADLRLTE+G+++ VS K++ I + KK
Sbjct: 412 GVMIDDLVTLGTSEPYRLFTSRAEYRLRLRSDNADLRLTELGYQISVVSSKRYTILKNKK 471
Query: 1176 REIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGI 1235
+EIIT LK+ P+ L + + ++ S+ +LL PN+N ++ +
Sbjct: 472 QEIITLT-NILKNIITTPTQL-ARHNIPISQDGVRR--SIFDLLGHPNINMEIVSRI--C 525
Query: 1236 NGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLS 1295
N +N +++ +Q+ I+ +Y Y RQ PHN+++ +I LS
Sbjct: 526 NTVKEFN-----KNVAEQVAIEAKYAPYFDRQDADIKAFLEEENTHIPHNIEFSQIHGLS 580
Query: 1296 IEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
E ++KL KP +IG A RI G+TPAA+T +LIYL+
Sbjct: 581 KEIQEKLEYIKPLSIGSARRIPGITPAAITNILIYLR 617
>TIGR_CMR|CHY_2557 [details] [associations]
symbol:CHY_2557 "serine hydroxymethyltransferase"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=ISS] [GO:0006544 "glycine metabolic process" evidence=ISS]
[GO:0006553 "lysine metabolic process" evidence=ISS] [GO:0006563
"L-serine metabolic process" evidence=ISS] [GO:0006566 "threonine
metabolic process" evidence=ISS] [GO:0006730 "one-carbon metabolic
process" evidence=ISS] [GO:0006760 "folic acid-containing compound
metabolic process" evidence=ISS] [GO:0015947 "methane metabolic
process" evidence=ISS] UniPathway:UPA00193 HAMAP:MF_00051
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
UniPathway:UPA00288 GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 RefSeq:YP_361350.1 ProteinModelPortal:Q3A934
SMR:Q3A934 STRING:Q3A934 GeneID:3728195 KEGG:chy:CHY_2557
PATRIC:21278163 HOGENOM:HOG000239403 OMA:GLLSDPM
BioCyc:CHYD246194:GJCN-2556-MONOMER Uniprot:Q3A934
Length = 421
Score = 1154 (411.3 bits), Expect = 3.8e-117, P = 3.8e-117
Identities = 216/376 (57%), Positives = 284/376 (75%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N L +DP+I+E + KE RQ IELIASEN+ S AVMEA G+ LTNKYAEG PGKRY
Sbjct: 5 NLRLKDVDPEIFEAMEKELSRQREKIELIASENFVSRAVMEAMGSHLTNKYAEGLPGKRY 64
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEG 124
YGGC+++D++E +A R KK+F AE NVQPHSG+QAN A + + L PGDT++GM+L G
Sbjct: 65 YGGCEYVDVVENLARERAKKLFGAEHVNVQPHSGAQANMAAYMAFLEPGDTVLGMNLAHG 124
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GHLTHG +N SGK +N + YG+ EKI+Y+KV LA K+KPK+I+AGASAY + IDF
Sbjct: 125 GHLTHGSPVNFSGKLYNFVSYGVEPDTEKINYEKVFELAYKHKPKMIVAGASAYPRVIDF 184
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+ IA + +Y MVDMAH AGL+AAG +P+P+P+AD +T+TTHK+LRGPRGG I K
Sbjct: 185 KHLKEIADEVGAYLMVDMAHIAGLVAAGLHPSPIPYADVVTTTTHKTLRGPRGGVIFCKA 244
Query: 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303
++ I+ VFPG+QGGPLMHVIAAKAVAFKE L P+F+ YQ+QVV NAK L++ L ++G
Sbjct: 245 EHAAKIDKTVFPGVQGGPLMHVIAAKAVAFKEALSPEFREYQQQVVNNAKALAEELKKQG 304
Query: 304 IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363
+R+VSGGT +H++LVD+R +TGK AE +L+ + NKN+IP DPE P TSGIR+G+
Sbjct: 305 LRLVSGGTDNHLMLVDVRPVGLTGKRAEQLLDEIGVTVNKNAIPYDPESPNVTSGIRIGT 364
Query: 364 SAITTRGFSELEIIKV 379
A+TTRG E E+ ++
Sbjct: 365 PAVTTRGMKEGEMAEI 380
>UNIPROTKB|Q0BWA9 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:228405 "Hyphomonas neptunium ATCC
15444" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
GO:GO:0002098 EMBL:CP000158 GenomeReviews:CP000158_GR
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
ProtClustDB:PRK05192 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:YP_762234.1 ProteinModelPortal:Q0BWA9 STRING:Q0BWA9
GeneID:4288219 KEGG:hne:HNE_3563 PATRIC:32220013
BioCyc:HNEP228405:GI69-3563-MONOMER Uniprot:Q0BWA9
Length = 621
Score = 1147 (408.8 bits), Expect = 2.1e-116, P = 2.1e-116
Identities = 255/578 (44%), Positives = 350/578 (60%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+ G+M DK+GIQFR+LN SKG AV R+Q+DR LY++A++
Sbjct: 56 KGHLVREI----DALDGVMGRLADKAGIQFRMLNRSKGPAVWGPRSQIDRKLYREAMQSE 111
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
L + NL + ++ +DLI++ I GVV G ++ + V++TTGTFL G+IHIG K
Sbjct: 112 LADYPNLTIIEDGAEDLIVEDGLIRGVVGLTGQRYGASKVVITTGTFLKGEIHIGAKRIP 171
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR G+ L+ RL + L GRLKTGTP R+D RTI + ++E Q D P+P FS L
Sbjct: 172 AGRIGEAPALGLSDRLYSIGLPMGRLKTGTPARLDGRTIHWDRLEMQPADEQPIP-FSFL 230
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
N + +Q+ C IT T +TH II + S ++SG I GPRYCPSIEDKV RF +
Sbjct: 231 -NSEITVRQVQCGITWTTPETHAIIEAHMNESAVYSGAISGRGPRYCPSIEDKVNRFGDR 289
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H +FLEPEG+ + YPNGISTSLP E Q + +++I G+++A I++ YAIEYDY +P
Sbjct: 290 DRHQVFLEPEGLDDHTVYPNGISTSLPEEVQEKFIRTIPGLEDAVILQHAYAIEYDYVDP 349
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
L +LE K + GL+ AGQINGTTGYEEA +QGL+AGLNAA + +DP I R +AY+
Sbjct: 350 RALSPALEVKLMPGLYLAGQINGTTGYEEAGAQGLMAGLNAARAASGKDPVIFDRAEAYI 409
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDL+T+G+ EPYRMFTSRAEYRL LR DNAD RLT+ G G V + +F K
Sbjct: 410 GVLIDDLVTRGVTEPYRMFTSRAEYRLALRADNADQRLTQRGIDAGVVCETRAAMFHVKH 469
Query: 1177 EIITKELQRLKDTWINPSI-LNTGESERVLGK-RIKHEYSLSNLLTWPNVNYNTLTSLKG 1234
+ LK ++P+ + G + G+ R EY L++ + ++ L +
Sbjct: 470 RALESARNLLKTLNLSPAAAVRNGWAVNQDGRIRSAWEY-----LSYKEICFDHLAQVWP 524
Query: 1235 INGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSL 1294
+I Q++I+ Y Y+ RQ P +LDY I L
Sbjct: 525 -------ELSAIPAEIVAQIEIEALYSAYLDRQAEDVAALRRDEALSIPSDLDYDLIGGL 577
Query: 1295 SIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
S E RQKL +P T+GQA RI GVTP ALT LL +++
Sbjct: 578 SNEVRQKLKSVRPGTLGQAGRIEGVTPGALTALLGHVR 615
>TIGR_CMR|NSE_0218 [details] [associations]
symbol:NSE_0218 "serine hydroxymethyltransferase"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0004372
"glycine hydroxymethyltransferase activity" evidence=ISS]
[GO:0006545 "glycine biosynthetic process" evidence=ISS]
[GO:0006730 "one-carbon metabolic process" evidence=ISS]
UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288
GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 HSSP:P34897 RefSeq:YP_506113.1
ProteinModelPortal:Q2GEI3 SMR:Q2GEI3 STRING:Q2GEI3 PRIDE:Q2GEI3
GeneID:3932003 KEGG:nse:NSE_0218 PATRIC:22680535 OMA:INEVIQG
ProtClustDB:CLSK2528038 BioCyc:NSEN222891:GHFU-249-MONOMER
Uniprot:Q2GEI3
Length = 419
Score = 1142 (407.1 bits), Expect = 7.1e-116, P = 7.1e-116
Identities = 213/381 (55%), Positives = 283/381 (74%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
++ +S +DP + II E RQ +++LIASEN+ S AV+EAQG++ TNKYAEGYP
Sbjct: 6 IVFFKSRISAVDPAVARIIDGEVSRQRKHLQLIASENFASAAVLEAQGSVFTNKYAEGYP 65
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYY GC++ D IE++AI R+ K+F ANVQPHSGSQANQAVF ++LNPGDT++G S
Sbjct: 66 GKRYYCGCEYADQIERLAIERVCKLFGCSYANVQPHSGSQANQAVFLALLNPGDTVLGFS 125
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKE-KIDYKKVEYLAKKNKPKLIIAGASAYSQ 179
L GGHLTHG +N+SGKWFN++ Y + + +ID +V LAKK+ P++IIAGASAYS+
Sbjct: 126 LASGGHLTHGASVNLSGKWFNAVHYNVRRDNFEIDMDEVRDLAKKHSPRMIIAGASAYSK 185
Query: 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFI 239
YIDF+ F IA + +Y + D+AHYAGLIAAGEYP+P P+ D +TSTTHK+LRGPRG +
Sbjct: 186 YIDFKSFREIADEVGAYLLGDVAHYAGLIAAGEYPSPFPYVDVMTSTTHKTLRGPRGAIV 245
Query: 240 LMK-KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKI 298
L ++ + INSA+FPG+QGGP MH IAA+AVAF E L +FK Y + V++NAK L+ +
Sbjct: 246 LTNSEELIRKINSAIFPGLQGGPQMHAIAARAVAFGEALTTEFKEYIRSVIRNAKTLANV 305
Query: 299 LDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSG 358
L +RG ++SGGT +HI+++DLR + G ++ LESA IICNKN+IP D EKP+ TSG
Sbjct: 306 LRERGFDVLSGGTDTHIVMIDLRKLNLKGNVSALKLESAGIICNKNAIPFDEEKPFVTSG 365
Query: 359 IRLGSSAITTRGFSELEIIKV 379
+R GS A TTRG ELE +
Sbjct: 366 LRFGSPAETTRGMRELEFAHI 386
>UNIPROTKB|Q2GD63 [details] [associations]
symbol:mnmG "tRNA uridine 5-carboxymethylaminomethyl
modification enzyme MnmG" species:222891 "Neorickettsia sennetsu
str. Miyayama" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_00129
InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737
GO:GO:0050660 EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0002098
eggNOG:COG0445 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
HOGENOM:HOG000201060 RefSeq:YP_506583.1 ProteinModelPortal:Q2GD63
STRING:Q2GD63 GeneID:3932258 KEGG:nse:NSE_0707 PATRIC:22681431
BioCyc:NSEN222891:GHFU-719-MONOMER Uniprot:Q2GD63
Length = 627
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 262/579 (45%), Positives = 354/579 (61%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KGN++ V DAMGG+MA+A D++ I R+LN SKGAAV RAQ DR LYK A+
Sbjct: 51 KGNVVKEV----DAMGGVMALAIDRASIHSRMLNRSKGAAVWGPRAQADRKLYKCAVLEL 106
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVV-TKIG-IKFFSKTVILTTGTFLNGKIHIGLKS 874
L L + ++ + DLII+ ++++GVV K G IK +LTTGTFLNG I G +
Sbjct: 107 LTKYEKLSILEDHITDLIIENDRLMGVVGEKTGTIK--CSAAVLTTGTFLNGIIQTGSER 164
Query: 875 YSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFS 934
GRFG+ ++ L L+ RL+TGTP R+ K +I++S + EQ GD P+P FS
Sbjct: 165 VEGGRFGEKASQCLGNTLRR-HFKISRLRTGTPARLYKDSINYSALVEQPGDSPPIP-FS 222
Query: 935 VLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFP 994
+ N + Q+SC+ITHTN KTH IIR+ K S I +G + + GPRYCPSIEDKV RF
Sbjct: 223 YM-NTEITVPQVSCYITHTNGKTHEIIRNSLKFSAIRNG-VSARGPRYCPSIEDKVVRFA 280
Query: 995 KKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYF 1054
+K SH IFLEPEG+ YPNGIS SLP E Q E ++SI G++ A++ R Y IEYDY
Sbjct: 281 EKDSHQIFLEPEGLDSELVYPNGISNSLPKEIQEEFIRSIAGLEKASVARYAYTIEYDYI 340
Query: 1055 NPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQA 1114
+P L+S+LE+K++ L+FAGQINGTTGYEEAA QG++AG NAA I R +
Sbjct: 341 DPRELRSTLESKRVKNLYFAGQINGTTGYEEAAGQGIVAGSNAAGAGL-----IISRSEG 395
Query: 1115 YLGVLVDDLITKGIQ-EPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFE 1173
Y+GV++DDLIT G EPYR+FTSRAEYRLNLR DNAD RLTE +++G V +++ ++
Sbjct: 396 YIGVMIDDLITLGTNGEPYRLFTSRAEYRLNLRSDNADFRLTEKAYRVGLVDEERYAAYK 455
Query: 1174 KKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLK 1233
KK + +L + P L E + ++ S NL+T P + L +
Sbjct: 456 KKYDTFHNYKSKLNELSTTPYELAKIEGISIAQDGVRK--SAWNLITQPLFVFEDLLRI- 512
Query: 1234 GINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQS 1293
L +E+ E ++ L I +YE Y+LRQ P N D+ I+S
Sbjct: 513 ---WPEL--SEV-PEKYREMLTINARYEPYLLRQEQDVKLLRNNEKVVIPSNFDFGAIKS 566
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
LS E +KL +PET+ QA RISGVTPAA+ +LI+L+
Sbjct: 567 LSSEVIEKLEAVRPETLAQAKRISGVTPAAIVSILIHLR 605
>TIGR_CMR|NSE_0707 [details] [associations]
symbol:NSE_0707 "glucose inhibited division protein A"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0002098 eggNOG:COG0445 KO:K03495
OMA:AQMSCNP ProtClustDB:PRK05192 InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280
PROSITE:PS01281 HOGENOM:HOG000201060 RefSeq:YP_506583.1
ProteinModelPortal:Q2GD63 STRING:Q2GD63 GeneID:3932258
KEGG:nse:NSE_0707 PATRIC:22681431
BioCyc:NSEN222891:GHFU-719-MONOMER Uniprot:Q2GD63
Length = 627
Score = 1136 (405.0 bits), Expect = 3.1e-115, P = 3.1e-115
Identities = 262/579 (45%), Positives = 354/579 (61%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KGN++ V DAMGG+MA+A D++ I R+LN SKGAAV RAQ DR LYK A+
Sbjct: 51 KGNVVKEV----DAMGGVMALAIDRASIHSRMLNRSKGAAVWGPRAQADRKLYKCAVLEL 106
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVV-TKIG-IKFFSKTVILTTGTFLNGKIHIGLKS 874
L L + ++ + DLII+ ++++GVV K G IK +LTTGTFLNG I G +
Sbjct: 107 LTKYEKLSILEDHITDLIIENDRLMGVVGEKTGTIK--CSAAVLTTGTFLNGIIQTGSER 164
Query: 875 YSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFS 934
GRFG+ ++ L L+ RL+TGTP R+ K +I++S + EQ GD P+P FS
Sbjct: 165 VEGGRFGEKASQCLGNTLRR-HFKISRLRTGTPARLYKDSINYSALVEQPGDSPPIP-FS 222
Query: 935 VLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFP 994
+ N + Q+SC+ITHTN KTH IIR+ K S I +G + + GPRYCPSIEDKV RF
Sbjct: 223 YM-NTEITVPQVSCYITHTNGKTHEIIRNSLKFSAIRNG-VSARGPRYCPSIEDKVVRFA 280
Query: 995 KKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYF 1054
+K SH IFLEPEG+ YPNGIS SLP E Q E ++SI G++ A++ R Y IEYDY
Sbjct: 281 EKDSHQIFLEPEGLDSELVYPNGISNSLPKEIQEEFIRSIAGLEKASVARYAYTIEYDYI 340
Query: 1055 NPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQA 1114
+P L+S+LE+K++ L+FAGQINGTTGYEEAA QG++AG NAA I R +
Sbjct: 341 DPRELRSTLESKRVKNLYFAGQINGTTGYEEAAGQGIVAGSNAAGAGL-----IISRSEG 395
Query: 1115 YLGVLVDDLITKGIQ-EPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFE 1173
Y+GV++DDLIT G EPYR+FTSRAEYRLNLR DNAD RLTE +++G V +++ ++
Sbjct: 396 YIGVMIDDLITLGTNGEPYRLFTSRAEYRLNLRSDNADFRLTEKAYRVGLVDEERYAAYK 455
Query: 1174 KKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLK 1233
KK + +L + P L E + ++ S NL+T P + L +
Sbjct: 456 KKYDTFHNYKSKLNELSTTPYELAKIEGISIAQDGVRK--SAWNLITQPLFVFEDLLRI- 512
Query: 1234 GINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQS 1293
L +E+ E ++ L I +YE Y+LRQ P N D+ I+S
Sbjct: 513 ---WPEL--SEV-PEKYREMLTINARYEPYLLRQEQDVKLLRNNEKVVIPSNFDFGAIKS 566
Query: 1294 LSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
LS E +KL +PET+ QA RISGVTPAA+ +LI+L+
Sbjct: 567 LSSEVIEKLEAVRPETLAQAKRISGVTPAAIVSILIHLR 605
>ASPGD|ASPL0000009022 [details] [associations]
symbol:AN6577 species:162425 "Emericella nidulans"
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0070899 "mitochondrial tRNA wobble uridine
modification" evidence=IEA] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005739 GO:GO:0050660
EMBL:BN001301 EMBL:AACD01000110 eggNOG:COG0445 HOGENOM:HOG000201059
KO:K03495 OMA:AQMSCNP InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
GO:GO:0070899 OrthoDB:EOG42C1HS RefSeq:XP_664181.1
ProteinModelPortal:Q5AYQ3 STRING:Q5AYQ3
EnsemblFungi:CADANIAT00007353 GeneID:2870641 KEGG:ani:AN6577.2
Uniprot:Q5AYQ3
Length = 700
Score = 1133 (403.9 bits), Expect = 6.4e-115, P = 6.4e-115
Identities = 257/593 (43%), Positives = 352/593 (59%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG +I + DAM G+ DK+G+ F +LN SKG AV RAQ+DR LYK +R
Sbjct: 87 KGTMIREI----DAMDGVAGRIVDKAGLMFMVLNRSKGPAVWGPRAQIDRELYKIYMREE 142
Query: 817 LENQLNLYLFQEEVDDLIIK-----------TNKILGVVTKIGIKFFSKTVILTTGTFLN 865
L NL + + +V D++I KI+GV + G + V++TTGTFL
Sbjct: 143 LLATENLSIVEGKVADIVISKEDVGTGPAAPAGKIVGVRLETGEVIPTSRVVITTGTFLG 202
Query: 866 GKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIG 925
G+IHIGLK+Y +GR G+ +T L+K L+E GRLKTGTPPR+DK+TIDFS ++ Q G
Sbjct: 203 GEIHIGLKAYPSGRIGEAATFGLSKSLREAGFQLGRLKTGTPPRLDKKTIDFSALQVQKG 262
Query: 926 DFDPVPVFSVLGN-INL-HPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYC 983
D P+P FS L + + QL+ F+T+TN +H+I+R+ S ++ GPRYC
Sbjct: 263 DMPPMP-FSYLNERVQVDEDAQLNSFLTYTNNASHDIVRANLDKSVHIRETVK--GPRYC 319
Query: 984 PSIEDKVYRFPKKKSHHIFLEPEGIVINEY-YPNGISTSLPFEAQIELVQSIDGMKNANI 1042
PS+E KV RF K H I+LEPEG NE YPNGIS ++P +AQ EL+++I G++N +
Sbjct: 320 PSLESKVIRFKDKTQHLIWLEPEGFAPNEVIYPNGISMTIPEDAQFELLKTIRGLENVRM 379
Query: 1043 IRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQ 1102
++PGY +EYDY +P NL +LETK I GL+ AGQINGTTGYEEAA QG++AG NA L +Q
Sbjct: 380 LQPGYGVEYDYIDPRNLWPTLETKLISGLYLAGQINGTTGYEEAAGQGIIAGANAGLSAQ 439
Query: 1103 DRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLG 1162
R+P R Y+G+++DDLITKG+ EPYRMFT+R+E+RL+ R DNADLRLT + K G
Sbjct: 440 GREPLTLTRSDGYIGIMIDDLITKGVSEPYRMFTARSEFRLSARSDNADLRLTRLAHKAG 499
Query: 1163 CVSYKQWKIFEKKREIITKELQRLKDTWINP--SILNTGESERVLGK-RIKHEYSLSNLL 1219
V K+W F I KELQ L P + G + R G R HE LL
Sbjct: 500 IVGKKRWSHFSDTEAQI-KELQSLLSNTKLPLAAWARKGLTVRNDGTVRSAHE-----LL 553
Query: 1220 TWPNVNYNTLTS-LKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXX 1278
V + L ++ +G Y + +I+ ++ ++ +Y Y+L+Q
Sbjct: 554 AHRAVGLDDLIPHIESPSG-TAYTASSFAPEIRNRVIVEARYAPYVLKQDKAAARVRRYE 612
Query: 1279 XXXXPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYL 1331
P +LDY I +S E RQ L + +P IG A RI GVTPA LL++L
Sbjct: 613 DFPIPLDLDYNAIHGISTEERQALERVRPANIGMARRIEGVTPAGSLQLLLHL 665
>TIGR_CMR|ECH_0311 [details] [associations]
symbol:ECH_0311 "serine hydroxymethyltransferase"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0004372
"glycine hydroxymethyltransferase activity" evidence=ISS]
[GO:0006545 "glycine biosynthetic process" evidence=ISS]
[GO:0006730 "one-carbon metabolic process" evidence=ISS]
UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288
GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK00011 HSSP:P34897
RefSeq:YP_507132.1 ProteinModelPortal:Q2GHF1 SMR:Q2GHF1
STRING:Q2GHF1 PRIDE:Q2GHF1 GeneID:3927190 KEGG:ech:ECH_0311
PATRIC:20576127 OMA:LELTHQF BioCyc:ECHA205920:GJNR-311-MONOMER
Uniprot:Q2GHF1
Length = 420
Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
Identities = 212/380 (55%), Positives = 290/380 (76%)
Query: 3 IKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGK 62
I +++L ++D +++ I E RQN+ ++LIASEN+ S AV++AQG++ TNKYAEGYPGK
Sbjct: 5 ILDDDLQEVDAEVFNCISGELNRQNSGLQLIASENFVSKAVLQAQGSIFTNKYAEGYPGK 64
Query: 63 RYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQ 122
RYY GC F D++E +AI RL ++F + ANVQPHSGSQANQ VF ++L PGDT++GMSL
Sbjct: 65 RYYCGCHFADIVENLAIERLCRLFGCKFANVQPHSGSQANQGVFAALLKPGDTVIGMSLD 124
Query: 123 EGGHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYI 181
GGHLTHG ++SGKWFN++ Y +++ ID ++E LA ++ P LIIAG+S+Y + I
Sbjct: 125 CGGHLTHGSAPSISGKWFNAVQYQVDRDTGLIDMDEIEKLAVEHNPSLIIAGSSSYPRVI 184
Query: 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILM 241
DF+RF IA + +Y + D+AHYAGLIAAGE+P+PV +A ITSTTHK+LRGPRG I+
Sbjct: 185 DFKRFREIADKVGAYLLADIAHYAGLIAAGEFPSPVEYAHVITSTTHKTLRGPRGAVIMT 244
Query: 242 KKK--YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL 299
+ +KKI S++FPG+QGGPLMHVIAAKAVAF E LKP+FK Y KQ++KN+K L ++
Sbjct: 245 NYEDIHKKI-QSSIFPGMQGGPLMHVIAAKAVAFAEALKPEFKDYAKQIIKNSKALGEVF 303
Query: 300 DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGI 359
+RG+ +V+GGT SH++++DLR+K +TGK A LE IICNKN+IP DPEKP+ TSG+
Sbjct: 304 KERGLDLVTGGTDSHMVVLDLRSKSVTGKDAVLALEKLGIICNKNAIPFDPEKPFVTSGL 363
Query: 360 RLGSSAITTRGFSELEIIKV 379
R GS+A T+RG E E ++
Sbjct: 364 RFGSAAETSRGLQESEFREI 383
>TIGR_CMR|BA_5558 [details] [associations]
symbol:BA_5558 "serine hydroxymethyltransferase"
species:198094 "Bacillus anthracis str. Ames" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 ProtClustDB:PRK00011 RefSeq:NP_847716.1
RefSeq:YP_022227.1 RefSeq:YP_031404.1 ProteinModelPortal:Q81JY4
SMR:Q81JY4 PRIDE:Q81JY4 DNASU:1085246
EnsemblBacteria:EBBACT00000011325 EnsemblBacteria:EBBACT00000016380
EnsemblBacteria:EBBACT00000022066 GeneID:1085246 GeneID:2820074
GeneID:2851919 KEGG:ban:BA_5558 KEGG:bar:GBAA_5558 KEGG:bat:BAS5165
HOGENOM:HOG000239405 OMA:CREAHAK
BioCyc:BANT260799:GJAJ-5240-MONOMER
BioCyc:BANT261594:GJ7F-5419-MONOMER Uniprot:Q81JY4
Length = 413
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 215/406 (52%), Positives = 295/406 (72%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
++L + D K++ I E RQ + IELIASEN+ S AVMEAQG++LTNKYAEGYPGKRYY
Sbjct: 2 DHLKRQDEKVFAAIEAELGRQRSKIELIASENFVSEAVMEAQGSVLTNKYAEGYPGKRYY 61
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+ +D++E IA +R+K+IF AE NVQPHSG+QAN AV+F++L GDT++GM+L GG
Sbjct: 62 GGCEHVDVVEDIARDRVKEIFGAEHVNVQPHSGAQANMAVYFTILEQGDTVLGMNLSHGG 121
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG +N SG +N + YG++ + I+Y V AK++KPKLI+AGASAY + IDF+
Sbjct: 122 HLTHGSPVNFSGVQYNFVEYGVDAESHCINYDDVLAKAKEHKPKLIVAGASAYPRVIDFK 181
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK 244
RF IA + +Y MVDMAH AGL+AAG +PNPVP A F+T+TTHK+LRGPRGG IL +++
Sbjct: 182 RFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPHAHFVTTTTHKTLRGPRGGMILCEEQ 241
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
+ K I+ ++FPGIQGGPLMHVIAAKAVAF E L+ DFK Y + ++ NA L++ L + G+
Sbjct: 242 FAKQIDKSIFPGIQGGPLMHVIAAKAVAFGEALQDDFKTYAQNIINNANRLAEGLQKEGL 301
Query: 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364
+VSGGT +H+IL+D+RN +ITGK+AE +L+ I NKN+IP + P+ TSG+R+G++
Sbjct: 302 TLVSGGTDNHLILIDVRNLEITGKVAEHVLDEVGITVNKNTIPFETASPFVTSGVRIGTA 361
Query: 365 AITTRGFSELEIIKVVLARKYRPSNFNTLIGQNHISKSLINALDKK 410
A+T+RGF ++ ++ Y N K + AL K
Sbjct: 362 AVTSRGFGLEDMDEIASLIAYTLKNHENEAALEEARKR-VEALTSK 406
>TIGR_CMR|SPO_1572 [details] [associations]
symbol:SPO_1572 "serine hydroxymethyltransferase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK00011
RefSeq:YP_166813.1 RefSeq:YP_168148.1 ProteinModelPortal:Q5LPA8
SMR:Q5LPA8 GeneID:3193885 GeneID:3194742 KEGG:sil:SPO1572
KEGG:sil:SPO2940 PATRIC:23376465 OMA:QIDFARM Uniprot:Q5LPA8
Length = 431
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 218/376 (57%), Positives = 280/376 (74%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E LS+ DP+++ I E RQ + IELIASEN S AVM+AQG+++TNKYAEGYPG+RYY
Sbjct: 13 EALSERDPELFGAITSELGRQRDEIELIASENIVSAAVMQAQGSVMTNKYAEGYPGRRYY 72
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+++D+ E +AI R K++F ANVQP+SGSQANQ VF +++ PGDTI+GMSL GG
Sbjct: 73 GGCQYVDIAENLAIERAKQLFGCGFANVQPNSGSQANQGVFQALIKPGDTILGMSLDAGG 132
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG N SGKWFN++ YG+ +++ + DY +VE LAK+++PKLIIAG SA + IDF
Sbjct: 133 HLTHGAAPNQSGKWFNAVQYGVRQQDNLLDYDQVEALAKEHRPKLIIAGGSAIPRQIDFA 192
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK 244
R IA + +Y VDMAH+AGL+AAGE+P+P P A T+TTHK+LRGPRGG IL +
Sbjct: 193 RMREIADMVGAYLHVDMAHFAGLVAAGEHPSPFPHAHVATTTTHKTLRGPRGGMILTNDE 252
Query: 245 -YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303
K +NSA+FPGIQGGPLMHVIAAKAVAF E L+P+FK Y +QV+ NA+ LS L + G
Sbjct: 253 DIAKKVNSAIFPGIQGGPLMHVIAAKAVAFGEALRPEFKTYIQQVIANAQALSDQLIKGG 312
Query: 304 IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363
+ V+ GT +H++LVDLR K + G E L A+I CNKN +P DPEKP TSGIRLGS
Sbjct: 313 LDTVTHGTDTHVVLVDLRPKGVKGNATEKALGRAHITCNKNGVPFDPEKPTVTSGIRLGS 372
Query: 364 SAITTRGFSELEIIKV 379
A TTRGF+E E ++
Sbjct: 373 PAGTTRGFAETEFRQI 388
>TIGR_CMR|SPO_2940 [details] [associations]
symbol:SPO_2940 "serine hydroxymethyltransferase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK00011
RefSeq:YP_166813.1 RefSeq:YP_168148.1 ProteinModelPortal:Q5LPA8
SMR:Q5LPA8 GeneID:3193885 GeneID:3194742 KEGG:sil:SPO1572
KEGG:sil:SPO2940 PATRIC:23376465 OMA:QIDFARM Uniprot:Q5LPA8
Length = 431
Score = 1125 (401.1 bits), Expect = 4.5e-114, P = 4.5e-114
Identities = 218/376 (57%), Positives = 280/376 (74%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E LS+ DP+++ I E RQ + IELIASEN S AVM+AQG+++TNKYAEGYPG+RYY
Sbjct: 13 EALSERDPELFGAITSELGRQRDEIELIASENIVSAAVMQAQGSVMTNKYAEGYPGRRYY 72
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+++D+ E +AI R K++F ANVQP+SGSQANQ VF +++ PGDTI+GMSL GG
Sbjct: 73 GGCQYVDIAENLAIERAKQLFGCGFANVQPNSGSQANQGVFQALIKPGDTILGMSLDAGG 132
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG N SGKWFN++ YG+ +++ + DY +VE LAK+++PKLIIAG SA + IDF
Sbjct: 133 HLTHGAAPNQSGKWFNAVQYGVRQQDNLLDYDQVEALAKEHRPKLIIAGGSAIPRQIDFA 192
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK 244
R IA + +Y VDMAH+AGL+AAGE+P+P P A T+TTHK+LRGPRGG IL +
Sbjct: 193 RMREIADMVGAYLHVDMAHFAGLVAAGEHPSPFPHAHVATTTTHKTLRGPRGGMILTNDE 252
Query: 245 -YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303
K +NSA+FPGIQGGPLMHVIAAKAVAF E L+P+FK Y +QV+ NA+ LS L + G
Sbjct: 253 DIAKKVNSAIFPGIQGGPLMHVIAAKAVAFGEALRPEFKTYIQQVIANAQALSDQLIKGG 312
Query: 304 IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363
+ V+ GT +H++LVDLR K + G E L A+I CNKN +P DPEKP TSGIRLGS
Sbjct: 313 LDTVTHGTDTHVVLVDLRPKGVKGNATEKALGRAHITCNKNGVPFDPEKPTVTSGIRLGS 372
Query: 364 SAITTRGFSELEIIKV 379
A TTRGF+E E ++
Sbjct: 373 PAGTTRGFAETEFRQI 388
>DICTYBASE|DDB_G0289183 [details] [associations]
symbol:DDB_G0289183 "Protein MTO1 homolog,
mitochondrial" species:44689 "Dictyostelium discoideum" [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0002098 "tRNA wobble uridine
modification" evidence=IEA] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 dictyBase:DDB_G0289183
GO:GO:0005737 GO:GO:0050660 EMBL:AAFI02000131 GO:GO:0002098
eggNOG:COG0445 KO:K03495 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281
RefSeq:XP_636325.1 ProteinModelPortal:Q54HW4 STRING:Q54HW4
EnsemblProtists:DDB0188295 GeneID:8626998 KEGG:ddi:DDB_G0289183
InParanoid:Q54HW4 OMA:ELYRESI ProtClustDB:CLSZ2728812
Uniprot:Q54HW4
Length = 778
Score = 975 (348.3 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 208/507 (41%), Positives = 309/507 (60%)
Query: 836 KTNK-ILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE 894
K K I G++ G K V++TTGTFL G IHIG K +GR GD + T+L+ L
Sbjct: 251 KNKKTIKGIILDNGEIIKCKKVVITTGTFLGGIIHIGNKRIPSGRMGDKAATALSLTLNR 310
Query: 895 LQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTN 954
+ GRLKTGTPPR+D ++ID+S M EQ+GD P+P + +QL CF+T T
Sbjct: 311 IGFELGRLKTGTPPRLDGKSIDYSVMVEQVGDEIPLPFSFSNSKVKNDQRQLKCFMTRTT 370
Query: 955 EKTHNIIRSEFKNSPIF-SGKI-ESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINE 1012
E++H II + P SG+ + +GPRYCPSIE K+ RF + K+H +++EPEG +
Sbjct: 371 EESHQIIIDNLSSRPALESGEDGKGLGPRYCPSIETKIERF-QGKTHQVWIEPEGYTTDV 429
Query: 1013 YYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLF 1072
YPNGIS SLP + Q++ +++I G++N +++PGYA+EYDY +P L +LETK+I GLF
Sbjct: 430 IYPNGISISLPEDVQMKFLKTIPGLENVKMLKPGYAVEYDYIDPRELNHTLETKKISGLF 489
Query: 1073 FAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPY 1132
AGQINGTTGYEEA +QG++AG+NA+L Q+R P I R + Y+GVL+DDL+T G+ EPY
Sbjct: 490 LAGQINGTTGYEEAGAQGIVAGINASLSHQNRPPMIISRSEGYIGVLIDDLVTLGVTEPY 549
Query: 1133 RMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTWIN 1192
RMFTSR+EYR++LR N+D RLTE ++ G S Q + ++K+ ++ + +LK+ +
Sbjct: 550 RMFTSRSEYRISLRAHNSDQRLTEKAFEFGSASNHQLQALKEKQSLLDQVYSKLKEIKKS 609
Query: 1193 PS-ILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQEDIK 1251
PS L E V K+ SL +L P+V++N + K T++ ++
Sbjct: 610 PSEYLTQCGIENVHEKK-----SLFEILRRPHVDFNLI--------KRYLPTDLLEKIPP 656
Query: 1252 KQLKI---QLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSIEARQKLNKYKPE 1308
+ I + +Y Y+ + P +L+Y I LS E++Q L+K +P
Sbjct: 657 LYISIIDSECKYSNYVDKHVIEFNNLRKRENQLIPPSLNYWDISQLSTESKQILSKARPT 716
Query: 1309 TIGQASRISGVTPAALTLLLIYLKSGF 1335
AS+ISG+TP+AL + +Y+K +
Sbjct: 717 NFSSASKISGITPSALFSIQVYIKKNY 743
Score = 169 (64.5 bits), Expect = 6.1e-114, Sum P(2) = 6.1e-114
Identities = 38/84 (45%), Positives = 56/84 (66%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KGNL+ + DA+GGIM +A D+SG QF++LN SKG+AV RAQ+DR LY+++I
Sbjct: 159 KGNLVREI----DAIGGIMGLAADESGCQFKVLNQSKGSAVHGPRAQIDRELYRESIHNL 214
Query: 817 L-----ENQLNLYLFQEEVDDLII 835
L +N NL + + V+D+I+
Sbjct: 215 LWKITQDNGGNLSIKEGMVEDIIL 238
Score = 37 (18.1 bits), Expect = 5.4e-07, Sum P(2) = 5.4e-07
Identities = 10/28 (35%), Positives = 16/28 (57%)
Query: 1016 NGISTSLPFEAQIELVQSIDGMKNANII 1043
+GI+ S F Q+ + ++ DG N II
Sbjct: 725 SGITPSALFSIQVYIKKNYDG--NERII 750
>TIGR_CMR|CBU_1419 [details] [associations]
symbol:CBU_1419 "serine hydroxymethyltransferase"
species:227377 "Coxiella burnetii RSA 493" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK00011
RefSeq:NP_820403.1 ProteinModelPortal:Q83BT3 SMR:Q83BT3
PRIDE:Q83BT3 GeneID:1209325 KEGG:cbu:CBU_1419 PATRIC:17931591
OMA:SKELTGW BioCyc:CBUR227377:GJ7S-1406-MONOMER Uniprot:Q83BT3
Length = 419
Score = 1120 (399.3 bits), Expect = 1.5e-113, P = 1.5e-113
Identities = 204/370 (55%), Positives = 285/370 (77%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
+ D ++ I E++RQ +++ELIASENY S V+E QG++LTNKYAEGYPG+RYYGG
Sbjct: 8 VESFDSELAGAIRDERRRQEHHVELIASENYVSPRVLELQGSVLTNKYAEGYPGRRYYGG 67
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+F+D+ E++AI+R K++F A+ ANVQPHSGSQAN + +++NPGDT++ M L GGHL
Sbjct: 68 CEFVDIAEQLAIDRAKELFGADYANVQPHSGSQANAEAYMALMNPGDTLLAMDLSHGGHL 127
Query: 128 THGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFY 187
THG ++ SGK++ ++ YGLN IDY++ LA+++KPK+I+AG SA+S +D++RF
Sbjct: 128 THGSPVSFSGKFYKAVHYGLNAHGDIDYEQAAQLAQEHKPKVILAGFSAFSGIVDWQRFR 187
Query: 188 HIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK--KY 245
IA ++N+YFM D+AH AGL+AAG YP+PV AD T+TTHK+LRGPR G IL K +
Sbjct: 188 EIADSVNAYFMTDIAHVAGLVAAGVYPSPVQIADVTTTTTHKTLRGPRAGLILAKANPEL 247
Query: 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305
+K +NSAVFPG QGGPLMH+IAAKAVAFKE ++P+FK Y +Q++KNAK +++++ +RG
Sbjct: 248 EKRLNSAVFPGSQGGPLMHIIAAKAVAFKEAMQPEFKTYAQQILKNAKAMAEVMKERGYT 307
Query: 306 IVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365
IVSGGT++H+ LV L +K I+GK AE+ L ANI NKN++P + P+ TSG+R+G+ A
Sbjct: 308 IVSGGTQNHLFLVSLLDKNISGKEAEAALGRANITVNKNTVPGETRSPFVTSGLRIGTPA 367
Query: 366 ITTRGFSELE 375
ITTRGF E E
Sbjct: 368 ITTRGFKEKE 377
>TIGR_CMR|CPS_3844 [details] [associations]
symbol:CPS_3844 "serine hydroxymethyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK13034
RefSeq:YP_270506.1 ProteinModelPortal:Q47XG4 SMR:Q47XG4
STRING:Q47XG4 GeneID:3518659 KEGG:cps:CPS_3844 PATRIC:21470595
OMA:LQSRDPV BioCyc:CPSY167879:GI48-3861-MONOMER Uniprot:Q47XG4
Length = 431
Score = 1111 (396.2 bits), Expect = 1.4e-112, P = 1.4e-112
Identities = 224/377 (59%), Positives = 274/377 (72%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+ +LS D + I E+ RQN IELIASEN S AVMEAQGT+LTNKYAEGYPG+RY
Sbjct: 15 SSDLSSTDGAVQVAIDLEEARQNQQIELIASENIVSKAVMEAQGTVLTNKYAEGYPGRRY 74
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEG 124
YGGC+ +DL+E +AI+R K IF A+ NVQPHSG+QAN AV +++ PGDTI+GMSL G
Sbjct: 75 YGGCEHVDLVETLAIDRAKLIFKADFVNVQPHSGAQANGAVMLALVKPGDTILGMSLDAG 134
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKE-KIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GHLTHG SGKWFN+I YG+ K + +IDY +V LA +++PK+IIAG SA + IDF
Sbjct: 135 GHLTHGAKPAQSGKWFNAIHYGVRKDDMRIDYDQVLALAIEHQPKMIIAGGSAIPRQIDF 194
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+F IA + + MVDMAH AGL+AAG + NP+PFAD +T+TTHK+LRGPRGG IL
Sbjct: 195 AKFREIADQVGAILMVDMAHIAGLVAAGAHQNPLPFADVVTTTTHKTLRGPRGGLILTNN 254
Query: 244 K-YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302
K INSAVFPG+QGGPLMHVIAAKAVA EVL+P F Y KQV+ NA++L+ L QR
Sbjct: 255 PDVAKKINSAVFPGLQGGPLMHVIAAKAVALGEVLEPSFGAYIKQVLSNARVLASTLQQR 314
Query: 303 GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362
G IV+ GT +H++LVDLR K + G E LE A I CNKN IP D EKP TSGIRLG
Sbjct: 315 GCDIVTDGTDTHLMLVDLRPKGLKGNTTEESLERAGITCNKNGIPFDSEKPMVTSGIRLG 374
Query: 363 SSAITTRGFS--ELEII 377
+ A T+RGF E E+I
Sbjct: 375 TPAGTSRGFGNDEFELI 391
>TIGR_CMR|APH_0224 [details] [associations]
symbol:APH_0224 "pyridine nucleotide-disulfide
oxidoreductase" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0008152 "metabolic process" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] HAMAP:MF_00129
InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134 GO:GO:0005737
GO:GO:0050660 EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0002098
RefSeq:YP_504843.1 ProteinModelPortal:Q2GLA8 STRING:Q2GLA8
GeneID:3931118 KEGG:aph:APH_0224 PATRIC:20949022 eggNOG:COG0445
HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP ProtClustDB:PRK05192
BioCyc:APHA212042:GHPM-256-MONOMER InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280
PROSITE:PS01281 Uniprot:Q2GLA8
Length = 628
Score = 1100 (392.3 bits), Expect = 2.0e-111, P = 2.0e-111
Identities = 248/578 (42%), Positives = 350/578 (60%)
Query: 764 VLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNL 823
V+ +DA+ G+M DKS I ILN SKG AV RAQ DR +YK +R + + NL
Sbjct: 56 VVREVDALDGLMGKVIDKSSIHSIILNRSKGPAVWGPRAQADREVYKPTMRDMVLHYENL 115
Query: 824 YLFQEEVDDLII----KTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR 879
+ EEV D + + +I V+ G + ++ TGTFL G IH+G +S+ AGR
Sbjct: 116 TVISEEVVDFTVDGVEERPQISSVLLSNGELIKTTRLVFATGTFLGGTIHVGNESFPAGR 175
Query: 880 FGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNI 939
GD +T L + L GRLKTGTPPRID+ +I++SK+ EQ GD P P FS +
Sbjct: 176 IGDKPSTKLPQALTAHGFQLGRLKTGTPPRIDRDSINWSKLLEQKGDVLPTP-FSFMSEC 234
Query: 940 NLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESI----GPRYCPSIEDKVYRFPK 995
P Q+SC++THTNEKTH IIR +N + + ES+ PRYCPSIE+K+ RFP
Sbjct: 235 VSLP-QISCYVTHTNEKTHEIIR---RNLHLAGSRCESLLDVMAPRYCPSIEEKIRRFPD 290
Query: 996 KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN 1055
KSH IFLEPEG+ N YPNGISTS P E Q+E+++SI+G++ A ++R GY +EY++ +
Sbjct: 291 HKSHQIFLEPEGLETNSVYPNGISTSCPIEVQLEMLRSINGLEQAVMLRHGYTVEYNFID 350
Query: 1056 PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAAL-FSQDRDPWIPGRDQA 1114
P L +LETK+I GLF AGQINGTTGYEEAA QG++AG NAAL Q+++P + R +
Sbjct: 351 PRELYHTLETKKIKGLFCAGQINGTTGYEEAAGQGIVAGANAALSLVQNQEPLVLKRSDS 410
Query: 1115 YLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEK 1174
Y+GV++DDL+T G EPYR+FTSRAEYRL LR DNAD+RLTEIG VS +++ +
Sbjct: 411 YIGVMIDDLVTLGTSEPYRLFTSRAEYRLTLRSDNADMRLTEIGRAYSLVSQERFDRLSQ 470
Query: 1175 KREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKG 1234
K++ + L LK P+ + E + + + + + + LL+ PN+N L +
Sbjct: 471 KKQEMHALLNALKGIVATPN--DIAEYDIAIAQNGEKKNAFE-LLSHPNINMEVLLKI-- 525
Query: 1235 INGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSL 1294
+L + + ++I+ +Y Y+ RQ P ++ Y + L
Sbjct: 526 --WPSLRS---FSAGTLALMEIEGKYAPYLKRQEADIKSFLEEENLSIPKDILYSDVYGL 580
Query: 1295 SIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
S EA++KL KP +IG A RI G+TPAA+ +LI+L+
Sbjct: 581 SKEAQEKLQAVKPFSIGAARRIPGITPAAIANILIHLR 618
>TIGR_CMR|CPS_0728 [details] [associations]
symbol:CPS_0728 "serine hydroxymethyltransferase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0035999 GO:GO:0006545
RefSeq:YP_267478.1 ProteinModelPortal:Q488N6 SMR:Q488N6
STRING:Q488N6 PRIDE:Q488N6 GeneID:3519747 KEGG:cps:CPS_0728
PATRIC:21464771 eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600
OMA:AICAKFP BioCyc:CPSY167879:GI48-815-MONOMER GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 Uniprot:Q488N6
Length = 419
Score = 1095 (390.5 bits), Expect = 6.8e-111, P = 6.8e-111
Identities = 210/376 (55%), Positives = 282/376 (75%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M ++ N++ DP+++E + E RQ +IELIASENY S V+EAQG+ LTNKYAEGYP
Sbjct: 1 MFTRDMNIATFDPELFEAMSNEVVRQEEHIELIASENYCSPRVLEAQGSQLTNKYAEGYP 60
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+++D+ E++AI+R K++F A ANVQPH+GSQAN AVF +++ PG ++GMS
Sbjct: 61 GKRYYGGCEYVDIAEQLAIDRAKELFGATYANVQPHAGSQANAAVFQALVTPGGKVLGMS 120
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKE-KIDYKKVEYLAKKNKPKLIIAGASAYSQ 179
L GGHLTHG ++ SGK + + YGL+ + IDY+++E LA ++KP++II G SA+S
Sbjct: 121 LAHGGHLTHGSHVSFSGKSYEAFQYGLHPETGDIDYEELERLAVEHKPEMIIGGFSAFSG 180
Query: 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFI 239
+D+ R IA + +YF VDMAH AGLIAAG YPNPVP A +T+TTHK+L GPRGG I
Sbjct: 181 VVDWARMRTIADKVGAYFFVDMAHVAGLIAAGLYPNPVPHAHVVTTTTHKTLAGPRGGLI 240
Query: 240 LM----KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKIL 295
+ + YKK+ NSAVFPG QGGPLMH+IAAKAVAFKE L P+FK+YQ+ V+ NA +
Sbjct: 241 ISGCDDEAIYKKL-NSAVFPGGQGGPLMHIIAAKAVAFKEALSPEFKVYQQNVLANALAM 299
Query: 296 SKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYF 355
+L RG ++VS GT++H++L+DL +K ITGK A++ L A+I NKNS+PNDP P+
Sbjct: 300 VDVLQDRGYKVVSNGTQNHLLLLDLIDKDITGKDADAALGKAHITVNKNSVPNDPRSPFV 359
Query: 356 TSGIRLGSSAITTRGF 371
TSG+RLG+ AIT RGF
Sbjct: 360 TSGLRLGTPAITRRGF 375
>UNIPROTKB|Q9KMP4 [details] [associations]
symbol:glyA2 "Serine hydroxymethyltransferase 2"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=ISS] [GO:0006545 "glycine biosynthetic process"
evidence=ISS] [GO:0006730 "one-carbon metabolic process"
evidence=ISS] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288
GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0006730 GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 PIR:A82480 RefSeq:NP_232675.1
ProteinModelPortal:Q9KMP4 SMR:Q9KMP4 DNASU:2612058 GeneID:2612058
KEGG:vch:VCA0278 PATRIC:20085121 OMA:MILTNHE ProtClustDB:PRK13034
Uniprot:Q9KMP4
Length = 435
Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
Identities = 214/371 (57%), Positives = 269/371 (72%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L+ + ++ I E RQN IELIASEN S AVM+AQGT LTNKYAEGYPG+RYYGG
Sbjct: 22 LAATNDAVFAAIQAEYTRQNEQIELIASENIVSKAVMQAQGTCLTNKYAEGYPGRRYYGG 81
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+ +D +E+IAI R K +F + ANVQPHSG+QAN AV ++L PGDTIMGMSL GGHL
Sbjct: 82 CEHVDSVEQIAIERAKMLFQCQYANVQPHSGAQANGAVMLALLQPGDTIMGMSLDAGGHL 141
Query: 128 THGMMLNMSGKWFNSICYGLNKKE-KIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +SGKWFN++ YG++++ +I+Y V LA ++KPK+IIAG SA + IDF +F
Sbjct: 142 THGARPALSGKWFNAVQYGVDRQTLEINYDSVRALALEHKPKMIIAGGSAIPRTIDFAQF 201
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK-- 244
I + + MVDMAH AGL+A G +P+P+P A +T+TTHK+LRGPRGG IL +
Sbjct: 202 RSIVDEVGALLMVDMAHIAGLVATGAHPSPLPHAHVVTTTTHKTLRGPRGGMILTNSEEI 261
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
+KKI NSAVFPG+QGGPLMHVIAAKAVAF E L P+F+ Y V+ NAK+L+++L RG
Sbjct: 262 HKKI-NSAVFPGLQGGPLMHVIAAKAVAFGEALGPEFRTYIDSVIDNAKVLAEVLQTRGC 320
Query: 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364
IV+GGT +H++LVDLR K + G E LE A I CNKN IP D EKP TSGIRLG+
Sbjct: 321 DIVTGGTDTHLMLVDLRPKGLKGNQVEQALERAGITCNKNGIPFDEEKPMITSGIRLGTP 380
Query: 365 AITTRGFSELE 375
A T+RGF E
Sbjct: 381 AGTSRGFGREE 391
>TIGR_CMR|VC_A0278 [details] [associations]
symbol:VC_A0278 "serine hydroxymethyltransferase"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:AE003853
GenomeReviews:AE003853_GR GO:GO:0006730 GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 PIR:A82480 RefSeq:NP_232675.1
ProteinModelPortal:Q9KMP4 SMR:Q9KMP4 DNASU:2612058 GeneID:2612058
KEGG:vch:VCA0278 PATRIC:20085121 OMA:MILTNHE ProtClustDB:PRK13034
Uniprot:Q9KMP4
Length = 435
Score = 1083 (386.3 bits), Expect = 1.3e-109, P = 1.3e-109
Identities = 214/371 (57%), Positives = 269/371 (72%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L+ + ++ I E RQN IELIASEN S AVM+AQGT LTNKYAEGYPG+RYYGG
Sbjct: 22 LAATNDAVFAAIQAEYTRQNEQIELIASENIVSKAVMQAQGTCLTNKYAEGYPGRRYYGG 81
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+ +D +E+IAI R K +F + ANVQPHSG+QAN AV ++L PGDTIMGMSL GGHL
Sbjct: 82 CEHVDSVEQIAIERAKMLFQCQYANVQPHSGAQANGAVMLALLQPGDTIMGMSLDAGGHL 141
Query: 128 THGMMLNMSGKWFNSICYGLNKKE-KIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG +SGKWFN++ YG++++ +I+Y V LA ++KPK+IIAG SA + IDF +F
Sbjct: 142 THGARPALSGKWFNAVQYGVDRQTLEINYDSVRALALEHKPKMIIAGGSAIPRTIDFAQF 201
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK-- 244
I + + MVDMAH AGL+A G +P+P+P A +T+TTHK+LRGPRGG IL +
Sbjct: 202 RSIVDEVGALLMVDMAHIAGLVATGAHPSPLPHAHVVTTTTHKTLRGPRGGMILTNSEEI 261
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
+KKI NSAVFPG+QGGPLMHVIAAKAVAF E L P+F+ Y V+ NAK+L+++L RG
Sbjct: 262 HKKI-NSAVFPGLQGGPLMHVIAAKAVAFGEALGPEFRTYIDSVIDNAKVLAEVLQTRGC 320
Query: 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364
IV+GGT +H++LVDLR K + G E LE A I CNKN IP D EKP TSGIRLG+
Sbjct: 321 DIVTGGTDTHLMLVDLRPKGLKGNQVEQALERAGITCNKNGIPFDEEKPMITSGIRLGTP 380
Query: 365 AITTRGFSELE 375
A T+RGF E
Sbjct: 381 AGTSRGFGREE 391
>TIGR_CMR|APH_0154 [details] [associations]
symbol:APH_0154 "serine hydroxymethyltransferase"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006544
"glycine metabolic process" evidence=ISS] [GO:0006730 "one-carbon
metabolic process" evidence=ISS] UniPathway:UPA00193 HAMAP:MF_00051
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
UniPathway:UPA00288 GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:CP000235 GenomeReviews:CP000235_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK00011
RefSeq:YP_504778.1 HSSP:P34897 ProteinModelPortal:Q2GLH3 SMR:Q2GLH3
STRING:Q2GLH3 GeneID:3930419 KEGG:aph:APH_0154 PATRIC:20948876
OMA:FKAYAHQ BioCyc:APHA212042:GHPM-189-MONOMER Uniprot:Q2GLH3
Length = 425
Score = 1076 (383.8 bits), Expect = 7.0e-109, P = 7.0e-109
Identities = 199/375 (53%), Positives = 280/375 (74%)
Query: 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG 66
++S+ D ++ E + E +RQN ++++IASEN+ S AV++AQG++LTNKYAEGYPG RYY
Sbjct: 9 HISESDAEVAECLSAEYKRQNTSLQMIASENFVSRAVLQAQGSVLTNKYAEGYPGSRYYC 68
Query: 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGH 126
GC +D+ E +A+ RL K+F + ANVQPHSGSQANQ V+ ++L PGDT++GMSL GGH
Sbjct: 69 GCSEVDVAETLAVERLCKLFGCKYANVQPHSGSQANQQVYMALLKPGDTVLGMSLDSGGH 128
Query: 127 LTHGMMLNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAYSQYIDFER 185
LTHG N+SGKWFN++ Y + + + D ++E +A + KP LIIAGAS+Y + IDF+
Sbjct: 129 LTHGAGPNVSGKWFNAVPYNVRRDTNLLDMGEIEEIALRVKPNLIIAGASSYPRRIDFKA 188
Query: 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KK 244
F IA + +YF+ D+AHY+GLIA G+YP P +A +TSTTHK+LRGPRGG I+ ++
Sbjct: 189 FRAIADKVGAYFLADIAHYSGLIAGGQYPTPFGYAHVVTSTTHKTLRGPRGGVIMTDDEE 248
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
K + SAVFPG+QGG LMHVIAAKAVAF+E + PDFK+Y Q++ N++ L+ +L G+
Sbjct: 249 IHKKLRSAVFPGMQGGALMHVIAAKAVAFREAMSPDFKVYVSQILDNSRALAAVLATGGL 308
Query: 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364
+V+GGT SH+++VDLR+K +TG+ S LE A I+CNKN++P D EKP+ TSGIRLG++
Sbjct: 309 DVVTGGTDSHMVVVDLRSKGLTGRDVSSSLERAGIVCNKNAVPFDTEKPWVTSGIRLGAA 368
Query: 365 AITTRGFSELEIIKV 379
A T+RG + K+
Sbjct: 369 AETSRGLVVKDFEKI 383
>TIGR_CMR|DET_0436 [details] [associations]
symbol:DET_0436 "Serine hydroxymethyltransferase"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0004372
"glycine hydroxymethyltransferase activity" evidence=ISS]
[GO:0006545 "glycine biosynthetic process" evidence=ISS]
[GO:0006730 "one-carbon metabolic process" evidence=ISS]
UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288
GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK00011
RefSeq:YP_181180.1 ProteinModelPortal:Q3Z9B9 SMR:Q3Z9B9
STRING:Q3Z9B9 PRIDE:Q3Z9B9 GeneID:3230231 KEGG:det:DET0436
PATRIC:21607941 OMA:ERFRAIC BioCyc:DETH243164:GJNF-436-MONOMER
Uniprot:Q3Z9B9
Length = 415
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 201/375 (53%), Positives = 280/375 (74%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L DP ++ I++E R I+LIASENYTS AV+EAQG++ TNKYAEGYPGKRYY G
Sbjct: 4 LKTSDPAVYNAIMQETTRLKETIDLIASENYTSKAVLEAQGSVFTNKYAEGYPGKRYYAG 63
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C++ D IE++AI+R K +F+AE ANVQPHSG+QAN A +F+++ PGDTIMG++L GGHL
Sbjct: 64 CEYADAIEELAIDRAKTLFHAEHANVQPHSGAQANMAAYFAMVKPGDTIMGLTLSHGGHL 123
Query: 128 THGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THG N +GK ++ I YGLN + E+IDY +E LA +++P+LI+ GASAY + +DFERF
Sbjct: 124 THGSKANFTGKLYHVIEYGLNAETERIDYDNLEKLALEHRPRLIVTGASAYPRILDFERF 183
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
I +++ MVD+AH AGL+AAG +P+PVP+AD +TST+HK+LRGPRGGFIL K++Y
Sbjct: 184 RAICDKVDAKLMVDIAHIAGLVAAGLHPSPVPYADVVTSTSHKTLRGPRGGFILCKEQYA 243
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
K I+ AVFP IQGGPLM V+AAKAVAF+E ++P F YQK++++N +++++ L + G+R+
Sbjct: 244 KAIDQAVFPVIQGGPLMQVVAAKAVAFQEAMQPGFVTYQKKILENTQVMAEELRKLGLRL 303
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIP-NDPEKPYFTSGIRLGSSA 365
VSGGT +H++LVDL + G A+ L A I+ N+N++P + + +GIRLG A
Sbjct: 304 VSGGTDNHLVLVDLSPIGVNGYDAQLALRRAGIVINRNTVPFAENQTANVPAGIRLGCPA 363
Query: 366 ITTRGFSELEIIKVV 380
T+RGF EI + V
Sbjct: 364 ATSRGFGPAEIRQTV 378
>SGD|S000003205 [details] [associations]
symbol:MTO1 "Mitochondrial protein" species:4932
"Saccharomyces cerevisiae" [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0070899 "mitochondrial tRNA wobble uridine
modification" evidence=IMP] [GO:0003674 "molecular_function"
evidence=ND] [GO:0002098 "tRNA wobble uridine modification"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134 SGD:S000003205
GO:GO:0005739 EMBL:BK006941 GO:GO:0050660 eggNOG:COG0445
HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280
PROSITE:PS01281 GO:GO:0070899 OrthoDB:EOG42C1HS EMBL:Z72758
PIR:S64258 RefSeq:NP_011278.2 ProteinModelPortal:P53070 SMR:P53070
DIP:DIP-4488N IntAct:P53070 MINT:MINT-535976 STRING:P53070
PaxDb:P53070 PeptideAtlas:P53070 EnsemblFungi:YGL236C GeneID:852616
KEGG:sce:YGL236C CYGD:YGL236c GeneTree:ENSGT00390000011297
NextBio:971820 Genevestigator:P53070 GermOnline:YGL236C
Uniprot:P53070
Length = 669
Score = 1065 (380.0 bits), Expect = 1.0e-107, P = 1.0e-107
Identities = 236/568 (41%), Positives = 350/568 (61%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQL---NLY 824
+DA+ G+M TD +G+QF++LN SKG AV RAQ+DR LYK+ ++ L ++ NL
Sbjct: 93 IDALDGLMGKVTDLAGVQFKMLNRSKGPAVWGPRAQIDRELYKKYMQRELSDKKAHPNLS 152
Query: 825 LFQEEVDDLIIKT----NKIL-GVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR 879
L Q +V DLI+ +K++ GVV G + + VI+TTGTFL+ +IHIG K +AGR
Sbjct: 153 LLQNKVADLILYDPGCGHKVIKGVVLDDGTQVGADQVIITTGTFLSAEIHIGDKRIAAGR 212
Query: 880 FGDFSTTSLAKRLK-ELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGN 938
G+ T ++ L+ E+ GRLKTGTP R+ K +IDFS +E Q GD PVP+ +
Sbjct: 213 IGEQPTYGISNTLQNEVGFQLGRLKTGTPARLAKESIDFSALEVQKGDALPVPMSFLNET 272
Query: 939 INLHP-KQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKK 997
+++ P KQL CF THT + H+ +R+ S I GPRYCPSIE K+ RFP +
Sbjct: 273 VSVEPTKQLDCFGTHTTPQMHDFLRNNLHQS-IHIQDTTIKGPRYCPSIEAKILRFPDRS 331
Query: 998 SHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPC 1057
SH I+LEPEG + YPNGIS S+P + Q+++++ I GM N I++P Y +EYDY +P
Sbjct: 332 SHKIWLEPEGFNSDVIYPNGISNSMPEDVQLQMMRLIPGMANVEILQPAYGVEYDYVDPR 391
Query: 1058 NLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFS-QDRDPWIPGRDQAYL 1116
LK SLETK + GLF AGQINGTTGYEEAA+QG++AG+NA L S Q+R+ + R +AY+
Sbjct: 392 QLKPSLETKLVDGLFLAGQINGTTGYEEAAAQGIIAGINAGLLSRQEREQLVLKRSEAYI 451
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVL+DDLI G+ EPYRMFTSR+E+R+++R DNAD RLT IG +LG +S + + + +
Sbjct: 452 GVLIDDLINNGVIEPYRMFTSRSEFRISVRADNADFRLTPIGAQLGIISPVRLSQYSRDK 511
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
+ + ++ L++ ++ ++ + + S + + +++ + L
Sbjct: 512 HLYDETIRALQNFKLSSQKWSSLLQANIAPQA--ENRSAWEIFRFKDMDLHKLYECIPDL 569
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQSLSI 1296
NL + ++ + ++ IQ +YE YI++Q P + DY ++ +LS
Sbjct: 570 PINLLDIPMH---VVTKINIQGKYEPYIVKQNQFVKAFQADENMLLPQDYDYRQLPTLST 626
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAAL 1324
E + LN+ +P TIGQA RI G+T AAL
Sbjct: 627 ECKLLLNRVQPLTIGQARRIQGITAAAL 654
>TIGR_CMR|CJE_0451 [details] [associations]
symbol:CJE_0451 "serine hydroxymethyltransferase"
species:195099 "Campylobacter jejuni RM1221" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 ProtClustDB:PRK13034 HOGENOM:HOG000239405
RefSeq:YP_178470.1 ProteinModelPortal:Q5HW65 SMR:Q5HW65
STRING:Q5HW65 PRIDE:Q5HW65 GeneID:3231213 KEGG:cjr:CJE0451
PATRIC:20042602 OMA:ALATWIC BioCyc:CJEJ195099:GJC0-456-MONOMER
Uniprot:Q5HW65
Length = 414
Score = 1063 (379.3 bits), Expect = 1.7e-107, P = 1.7e-107
Identities = 200/379 (52%), Positives = 275/379 (72%)
Query: 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG 66
+L D +I+++ KE +RQ +E+IASEN+T VME G++LTNKYAEGYPGKRYYG
Sbjct: 2 SLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKRYYG 61
Query: 67 GCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGH 126
GC+F+D IE +AI R KK+FN + ANVQP+SGSQANQ V+ +++NPGD I+GM L GGH
Sbjct: 62 GCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSHGGH 121
Query: 127 LTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
LTHG ++ SGK + S YG+ +IDY+KV +AKK KPKLI+ GASAY++ IDF +F
Sbjct: 122 LTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAYARVIDFAKF 181
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMK-KKY 245
IA + +Y D+AH AGL+ AGE+P+P P A ++STTHK+LRGPRGG I+ ++
Sbjct: 182 REIADEVGAYLFADIAHIAGLVVAGEHPSPFPHAHVVSSTTHKTLRGPRGGIIMTNDEEL 241
Query: 246 KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305
K INSA+FPGIQGGPLMHVIAAKAV FK L ++K+Y KQV NA++L+ +L R +
Sbjct: 242 AKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDRKFK 301
Query: 306 IVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365
+VS GT +H++L+ +++ +GK A+ L +A I NKN++P + P+ TSG+RLG+ A
Sbjct: 302 LVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLGTPA 361
Query: 366 ITTRGFSE--LEIIKVVLA 382
+T RGF E +EI+ +A
Sbjct: 362 LTARGFKEKEMEIVSNYIA 380
>UNIPROTKB|F1NVJ9 [details] [associations]
symbol:MTO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] [GO:0070899 "mitochondrial tRNA wobble uridine
modification" evidence=IEA] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0005739 GO:GO:0050660
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281 GO:GO:0070899
OMA:SRKPPFV GeneTree:ENSGT00390000011297 EMBL:AADN02002506
IPI:IPI00823447 Ensembl:ENSGALT00000025668 ArrayExpress:F1NVJ9
Uniprot:F1NVJ9
Length = 704
Score = 1055 (376.4 bits), Expect = 1.2e-106, P = 1.2e-106
Identities = 243/596 (40%), Positives = 361/596 (60%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ D +G+ +++LN SKG AV RAQ+DR Y+ ++
Sbjct: 82 KGHLMREV----DALDGLCGRICDVAGVHYKVLNRSKGPAVWGLRAQIDRRRYRDGVQKE 137
Query: 817 LENQLNLYLFQEEVDDLII---KTN-----KILGVVTKIGIKFFSKTVILTTGTFLNGKI 868
+ + L + + V+DL++ +TN ++ GVV G + +VILTTGTFL G I
Sbjct: 138 ILSTPLLTVREASVEDLLLTEPETNHPGKCQVTGVVLGDGSTVSAGSVILTTGTFLRGVI 197
Query: 869 HIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFD 928
+GL+++ AGR GD LA+ L++L + GRLKTGTPPR+ K TI+FS +EE++ D
Sbjct: 198 LMGLETHPAGRLGDQPAVGLAQTLEKLGFTVGRLKTGTPPRLAKDTINFSGLEERVPDNP 257
Query: 929 PVPVFSVLGN-INLHPK-QLSCFITHTNEKTHNIIRSEFK-NSPIFSGKIESIGPRYCPS 985
PVP FS L + + P+ QL C++THTN K I+ N + + + GPRYCPS
Sbjct: 258 PVP-FSFLSKAVWIKPEDQLLCYLTHTNLKAQQIVLDNLHLNDHV---RETTKGPRYCPS 313
Query: 986 IEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRP 1045
E KV RFP ++ H ++LEPEG+ + YP G+S +LP E Q ++++SI G++ A I++P
Sbjct: 314 FESKVLRFPNRE-HQVWLEPEGLESDVIYPQGLSMTLPPELQEQVIRSIRGLEKARILQP 372
Query: 1046 GYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRD 1105
GY ++YD+ +P L +SLE++ + LFFAGQINGTTGYEEAA+QG++AG+NA L Q +
Sbjct: 373 GYGVQYDFLDPRQLTASLESRLVQRLFFAGQINGTTGYEEAAAQGVIAGINACLRVQGKP 432
Query: 1106 PWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK-LGCV 1164
P+I R + Y+GVL+DDL T G EPYRMFTSR E+R++LR DNAD RLT G++ GCV
Sbjct: 433 PFIVSRTEGYVGVLIDDLTTLGTTEPYRMFTSRVEFRMSLRPDNADARLTHRGFEEAGCV 492
Query: 1165 SYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNV 1224
S ++++ + R + + LK + S + E + + S ++L +P
Sbjct: 493 SQQRYEQAVQMRAALEDGIATLKSLQFSISKWSHLVPEVPISSNRRSPLSAFDILRYPEA 552
Query: 1225 NYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPH 1284
N L + I + L ++E + ++LKI+ YE ++ Q P
Sbjct: 553 NMEILA--RAIP-EPLRKLAEWRE-LSERLKIEAAYEWCVVNQQQEIEEVRRDEALRLPE 608
Query: 1285 NLDYMKIQ-SLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLKNF 1339
++DY I SLS E R+KLN +P+TIG SRI GVTPAA+ LL ++K+ LK F
Sbjct: 609 DIDYFAIDASLSAEVREKLNSSRPQTIGAVSRIPGVTPAAIINLLRFVKAEKLKAF 664
>UNIPROTKB|F1RQG8 [details] [associations]
symbol:MTO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0055114 "oxidation-reduction process" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0002098 "tRNA wobble uridine modification" evidence=IEA]
HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416
InterPro:IPR013027 Pfam:PF01134 PRINTS:PR00368 GO:GO:0050660
GO:GO:0055114 GO:GO:0002098 KO:K03495 InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280
PROSITE:PS01281 GeneTree:ENSGT00390000011297 EMBL:FP102323
RefSeq:XP_003121457.1 UniGene:Ssc.52100 Ensembl:ENSSSCT00000004958
GeneID:100515594 KEGG:ssc:100515594 Uniprot:F1RQG8
Length = 691
Score = 1019 (363.8 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 243/593 (40%), Positives = 360/593 (60%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ + D+SG+ +++LN KG AV RAQ+DR LYKQ ++
Sbjct: 86 KGHLMREV----DALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRNLYKQNMQKE 141
Query: 817 LENQLNLYLFQEEVDDLII------KTNK--ILGVVTKIGIKFFSKTVILTTGTFLNGKI 868
+ N L + + V+DLI+ +T K + GVV G ++ +V+LTTGTFL G I
Sbjct: 142 ILNTPLLTVQEGAVEDLILTEPEPERTGKYRVCGVVLVDGNTVYADSVVLTTGTFLRGVI 201
Query: 869 HIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFD 928
IGL+++ AGR GD + LA+ L++L GRLKTGTPPRI K +I+FS + +Q D
Sbjct: 202 VIGLETHPAGRLGDQPSVGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKQTPDNP 261
Query: 929 PVPVFSVLGN-INLHPK-QLSCFITHTNEKTHNIIRSEFK-NSPIFSGKIESIGPRYCPS 985
+P FS + + + P+ QL C +THTN + I+ N + K + GPRYCPS
Sbjct: 262 SIP-FSFMNETVWIKPEDQLPCHLTHTNPRVDEIVLENLHLNCHV---KETTRGPRYCPS 317
Query: 986 IEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRP 1045
IE KV RFP + H ++LEPEG+ + YP G+S +LP E Q +++ I G++ A +I+P
Sbjct: 318 IESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLEKAKMIQP 376
Query: 1046 GYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRD 1105
GY ++YDY +P + SLET + LFFAGQINGTTGYEEAA+QG++AG+NA+L + +
Sbjct: 377 GYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGIMAGINASLRVRCKP 436
Query: 1106 PWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK-LGCV 1164
P++ R + Y+GVL+DDL T G EPYRMFTSRAE+RL+LR DNAD RLT G+K GCV
Sbjct: 437 PFVISRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFRLSLRPDNADNRLTFRGYKEAGCV 496
Query: 1165 SYKQWKIFEKKREIITKELQRLKDTWINPSILNT--GESERVLGKRIKHEYSLSNLLTWP 1222
S ++++ + + + + LK + S E+ +GK + +L ++L +
Sbjct: 497 SQQRYERASWMKSSLEEGISVLKSIEFSSSKWKNLIPEASISIGKSVPLR-AL-DVLKYE 554
Query: 1223 NVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXX 1282
V+ +L K + + L +E + ++LKI+ YE + Q
Sbjct: 555 EVDMKSLA--KAVP-EPLKKYSKCRE-LAERLKIEATYEAVLFHQQQEMKEVQRDEALRL 610
Query: 1283 PHNLDYMKIQ--SLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
P +LDY+ ++ SLS E R+KL+ +P+TIG ASRI GVTPAA+ LL ++K+
Sbjct: 611 PEDLDYLTLRDVSLSYEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKT 663
Score = 37 (18.1 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 422 RGVGKTTISRILAKCLNCIGIDGNGGITSQP 452
RG G+ + ++ + L G G+G P
Sbjct: 5 RGCGRRVAAFLIKQHLPSAGFSGDGAAPRTP 35
>UNIPROTKB|Q1JQB6 [details] [associations]
symbol:MTO1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0070899 "mitochondrial tRNA wobble uridine
modification" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 InterPro:IPR013027 Pfam:PF01134 PRINTS:PR00368
GO:GO:0005739 GO:GO:0050660 GO:GO:0055114 eggNOG:COG0445
HOGENOM:HOG000201059 KO:K03495 InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280
PROSITE:PS01281 GO:GO:0070899 CTD:25821 HOVERGEN:HBG031719
OMA:SRKPPFV OrthoDB:EOG4J3WGQ GeneTree:ENSGT00390000011297
EMBL:DAAA02025232 EMBL:BC116077 IPI:IPI00703008
RefSeq:NP_001069537.1 UniGene:Bt.42230 STRING:Q1JQB6
Ensembl:ENSBTAT00000022398 GeneID:535768 KEGG:bta:535768
InParanoid:Q1JQB6 NextBio:20876830 Uniprot:Q1JQB6
Length = 692
Score = 1026 (366.2 bits), Expect = 1.4e-103, P = 1.4e-103
Identities = 241/592 (40%), Positives = 357/592 (60%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ + D+SGI +++LN KG AV RAQ+DR LYKQ ++
Sbjct: 86 KGHLMREV----DALDGLCSRICDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKE 141
Query: 817 LENQLNLYLFQEEVDDLIIK------TNK--ILGVVTKIGIKFFSKTVILTTGTFLNGKI 868
+ N L + + V+DLI+ T K + GVV G K ++++V+LTTGTFL G I
Sbjct: 142 ILNTPLLTVQEGAVEDLILTEPEPEHTGKYRVSGVVLADGSKVYAESVVLTTGTFLRGMI 201
Query: 869 HIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFD 928
IGL+ + AGR GD LA+ L++L GRLKTGTPPRI K +++FS + +Q D
Sbjct: 202 VIGLEMHPAGRLGDQPAVGLAQTLEKLGFVVGRLKTGTPPRIAKESVNFSILNKQTPDNP 261
Query: 929 PVPVFSVLGNINLHPK-QLSCFITHTNEKTHNIIRSEFK-NSPIFSGKIESIGPRYCPSI 986
+P + + + P+ QL C++THTN + I+ N + K + GPRYCPSI
Sbjct: 262 SIPFSFINQTVWIKPEDQLPCYLTHTNPRVDEIVLENLHLNCHV---KETTRGPRYCPSI 318
Query: 987 EDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPG 1046
E KV RFP + H ++LEPEG+ + YP G+S +LP E Q +++ I G++NA +I+PG
Sbjct: 319 ESKVLRFPNRV-HQVWLEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLENAKMIQPG 377
Query: 1047 YAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDP 1106
Y ++YDY +P + SLET + LFFAGQINGTTGYEEAA+QG++AG+NA+L + + P
Sbjct: 378 YGVQYDYMDPRQISPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVRHKPP 437
Query: 1107 WIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK-LGCVS 1165
++ R + Y+GVL+DDL T G EPYRMFTSRAE+RL+LR DNAD RLT G+K GCVS
Sbjct: 438 FVISRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFRLSLRPDNADSRLTFRGYKEAGCVS 497
Query: 1166 YKQWKIFEKKREIITKELQRLKDT-WINPSILNT-GESERVLGKRIKHEYSLSNLLTWPN 1223
++++ + + + + LK +++ N ES GK + +L ++L +
Sbjct: 498 QQRYERASWMKSSLEEGISMLKSIEFLSTKWKNLIPESSISSGKSLPLR-AL-DVLKYEE 555
Query: 1224 VNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXP 1283
V+ L + + T+ ++ ++LKI+ YE + Q P
Sbjct: 556 VDMELLA--RAVPEPLKKYTQC--RELAERLKIEATYESVLFHQQQEIKEVQRDEALQLP 611
Query: 1284 HNLDYMKIQ--SLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
+LDY+ ++ SLS E R+KL+ +P+TIG ASRI GVT AA+ LL ++K+
Sbjct: 612 KDLDYLTLKDISLSYEVREKLHFSRPQTIGAASRIPGVTAAAIVNLLRFVKT 663
>UNIPROTKB|E2R8R6 [details] [associations]
symbol:MTO1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0070899 "mitochondrial tRNA wobble uridine
modification" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] HAMAP:MF_00129 InterPro:IPR002218
InterPro:IPR004416 InterPro:IPR013027 Pfam:PF01134 PRINTS:PR00368
GO:GO:0005739 GO:GO:0050660 GO:GO:0055114 OMA:AQMSCNP
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281 GO:GO:0070899
GeneTree:ENSGT00390000011297 EMBL:AAEX03008459
ProteinModelPortal:E2R8R6 Ensembl:ENSCAFT00000004181 Uniprot:E2R8R6
Length = 672
Score = 1021 (364.5 bits), Expect = 4.7e-103, P = 4.7e-103
Identities = 238/590 (40%), Positives = 349/590 (59%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ + D+SG+ +++LN KG AV RAQ+DR LYK+ ++
Sbjct: 86 KGHLMREV----DALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKRNMQKE 141
Query: 817 LENQLNLYLFQEEVDDLIIK------TNK--ILGVVTKIGIKFFSKTVILTTGTFLNGKI 868
+ N L + + V+DLI+ T K + GVV G +++V+LTTGTFL G I
Sbjct: 142 ILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLADGSTVHAESVVLTTGTFLRGVI 201
Query: 869 HIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFD 928
IGL+ + AGR GD + LA+ L++L GRLKTGTPPRI K +++FS + +Q D
Sbjct: 202 VIGLEMHPAGRLGDQPSVGLAQTLEKLGFVVGRLKTGTPPRIAKESVNFSILNKQTPDNP 261
Query: 929 PVPVFSVLGNINLHPK-QLSCFITHTNEKTHNIIRSEFK-NSPIFSGKIESIGPRYCPSI 986
+P V + + P+ QL C++THTN + I+ NS I K + GPRYCPSI
Sbjct: 262 SIPFSFVSETVWIKPEDQLPCYLTHTNPRVDEIVLENLHLNSHI---KETTRGPRYCPSI 318
Query: 987 EDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPG 1046
E KV RFP + H ++LEPEG+ YP G+S +LP E Q +++ I G++ A +I+PG
Sbjct: 319 ESKVLRFPNRL-HQVWLEPEGMDSELIYPQGLSVTLPAELQEKMITCIKGLEKAKMIQPG 377
Query: 1047 YAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDP 1106
Y ++YDY +P + SLET + LFFAGQINGTTGYEEAA+QG++AG+NA+L + + P
Sbjct: 378 YGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVKHKPP 437
Query: 1107 WIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK-LGCVS 1165
++ R + Y+GVL+DDL T G EPYRMFTSRAE+RL+LR DNAD RLT G+K +GCVS
Sbjct: 438 FVVSRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFRLSLRPDNADSRLTFRGYKEVGCVS 497
Query: 1166 YKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVN 1225
++++ + + + + LK + S E + ++L + V+
Sbjct: 498 QQRYERASWMKSSLEEGISVLKSIEFSSSKWKKLIPEASISIVKSLPLRALDVLKYEEVD 557
Query: 1226 YNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHN 1285
L K + + ++ ++LKI+ YE + Q P +
Sbjct: 558 MKLLA--KAV--PEPLKKYVESRELAERLKIEATYESVLFHQQQQIKEVQQDEALQLPKD 613
Query: 1286 LDYMKIQ--SLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
LDY+ ++ SLS E R+KL+ +PETIG ASRI GVTPAA+ LL ++K+
Sbjct: 614 LDYLTLRDVSLSYEVREKLHFIRPETIGAASRIPGVTPAAIINLLRFVKT 663
>UNIPROTKB|O53615 [details] [associations]
symbol:glyA2 "Serine hydroxymethyltransferase 2"
species:1773 "Mycobacterium tuberculosis" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006544 "glycine metabolic
process" evidence=IDA] [GO:0006563 "L-serine metabolic process"
evidence=IDA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IDA] [GO:0042803 "protein homodimerization activity"
evidence=IPI] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288
GO:GO:0005886 GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:AE000516 GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR
EMBL:BX842572 GO:GO:0006544 GO:GO:0035999 GO:GO:0006545
eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 ProtClustDB:PRK00011 BRENDA:2.1.2.1
PIR:G70848 RefSeq:NP_214584.1 RefSeq:NP_334486.1
RefSeq:YP_006513385.1 ProteinModelPortal:O53615 SMR:O53615
PRIDE:O53615 EnsemblBacteria:EBMYCT00000002193
EnsemblBacteria:EBMYCT00000071276 GeneID:13316049 GeneID:886983
GeneID:922815 KEGG:mtc:MT0076 KEGG:mtu:Rv0070c KEGG:mtv:RVBD_0070c
PATRIC:18121891 TubercuList:Rv0070c OMA:DYLIDMD Uniprot:O53615
Length = 425
Score = 1020 (364.1 bits), Expect = 6.0e-103, P = 6.0e-103
Identities = 199/375 (53%), Positives = 273/375 (72%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N++L+ DP I +I E +RQ + +E+IASENY LAVM+AQG++LTNKYAEGYPG+RY
Sbjct: 5 NDSLTAFDPDIAALIDGELRRQESGLEMIASENYAPLAVMQAQGSVLTNKYAEGYPGRRY 64
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEG 124
YGGC+F+D +E++AI+R+K +F AE ANVQPHSG+ AN A ++LNPGDTI+G+SL G
Sbjct: 65 YGGCEFVDGVEQLAIDRVKALFGAEYANVQPHSGATANAATMHALLNPGDTILGLSLAHG 124
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GHLTHGM +N SGK +++ Y ++K++ +D V A+ ++PK+IIAG SAY + +DF
Sbjct: 125 GHLTHGMRINFSGKLYHATAYEVSKEDYLVDMDAVAEAARTHRPKMIIAGWSAYPRQLDF 184
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
RF IA +++ MVDMAH+AGL+AAG +P+PVP A +TSTTHK+L GPRGG IL
Sbjct: 185 ARFRAIADEVDAVLMVDMAHFAGLVAAGVHPSPVPHAHVVTSTTHKTLGGPRGGIILCND 244
Query: 244 K-YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQ- 301
K INSAVFPG QGGPL HVIAAKA AFK +P+F Q++ + A+IL+ L Q
Sbjct: 245 PAIAKKINSAVFPGQQGGPLEHVIAAKATAFKMAAQPEFAQRQQRCLDGARILAGRLTQP 304
Query: 302 ----RGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTS 357
RGI +++GGT H++LVDLR+ ++ G+ AE L + +I N+N++P DP P TS
Sbjct: 305 DVAERGIAVLTGGTDVHLVLVDLRDAELDGQQAEDRLAAVDITVNRNAVPFDPRPPMITS 364
Query: 358 GIRLGSSAITTRGFS 372
G+R+G+ A+ RGFS
Sbjct: 365 GLRIGTPALAARGFS 379
>CGD|CAL0001681 [details] [associations]
symbol:MTO1 species:5476 "Candida albicans" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0070899 "mitochondrial tRNA
wobble uridine modification" evidence=IEA] InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 CGD:CAL0001681 GO:GO:0050660
EMBL:AACQ01000053 EMBL:AACQ01000052 GO:GO:0002098 eggNOG:COG0445
KO:K03495 InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 RefSeq:XP_717515.1
RefSeq:XP_717588.1 ProteinModelPortal:Q5A7B1 STRING:Q5A7B1
GeneID:3640707 GeneID:3640773 KEGG:cal:CaO19.12517
KEGG:cal:CaO19.5050 Uniprot:Q5A7B1
Length = 695
Score = 1016 (362.7 bits), Expect = 1.6e-102, P = 1.6e-102
Identities = 239/599 (39%), Positives = 357/599 (59%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG L+ V DA+ G+ A TDK+GI FRILN+S+GAAV RAQ+DR +Y + ++
Sbjct: 87 KGTLLREV----DALDGVSARITDKAGIHFRILNASRGAAVHGPRAQIDRKIYLEEMQKE 142
Query: 817 LENQLNLYLFQEEVDDLIIK---TN----------KILGVVTKIGIKFFSKTVILTTGTF 863
+ N NL + + +V+D+IIK +N ++ GV+ G S+ V++TTGTF
Sbjct: 143 ILNYPNLKVLEAQVEDIIIKPVLSNGEDFSGREFGEVKGVILSDGRVLKSEKVVVTTGTF 202
Query: 864 LNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQ 923
L G+IHIGLK + +GR G+ +T L+K LK+ GRLKTGTPPR+ RTI+F + EQ
Sbjct: 203 LGGEIHIGLKCFPSGRMGEDATFGLSKTLKQAGFRLGRLKTGTPPRLSSRTINFKGLIEQ 262
Query: 924 IGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYC 983
DF P P+ + + L + + C+ T TN + H II S ++ GPRYC
Sbjct: 263 PSDFPPQPMSYMNDKVYLEDQLMKCYQTKTNPEFHKIIADNLDKSIHIRETVK--GPRYC 320
Query: 984 PSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANII 1043
PSIE KV +FP K H+++LEPEG+ + YPNGIS ++P E Q +LV+ + G +N +
Sbjct: 321 PSIESKVIKFPHKDYHYVWLEPEGLDSDLIYPNGISCTMPEEIQEKLVRLMPGCENVTMT 380
Query: 1044 RPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQD 1103
+PGY +EYD+ +P LKS+LETK ++GL+ AGQINGTTGYEEAA+QG +AG+NA L S
Sbjct: 381 QPGYGVEYDFIDPRELKSTLETKLVNGLYLAGQINGTTGYEEAAAQGCIAGINAGL-SYL 439
Query: 1104 RDPWIP-GRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLG 1162
+ P + R + +L+DDLITKG++EPYRMFTSR+E+R ++R DNAD RLT+ G++LG
Sbjct: 440 QKPLLELKRPDGLVAILIDDLITKGVEEPYRMFTSRSEFRFSIRSDNADDRLTQKGYELG 499
Query: 1163 CVSYKQWKIFEKKREI---ITKELQRLK---DTWINPSI----LNTGESERVLG-KRIKH 1211
VS ++++ F+K+ + I L LK W P + +T E+++V G K + +
Sbjct: 500 VVSEERYQFFKKEADQFKDIKNALSVLKLSGKQWA-PGLQGLKTDTRENDKVSGWKLLSY 558
Query: 1212 E-YSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXX 1270
S++++L P++++ +T + L N + ++ ++ + Y+ + R+
Sbjct: 559 PGVSINDIL--PHMSH-FMTQVPPC----LQNVSMR---LQNKIDVVSDYDPIMYREKAN 608
Query: 1271 XXXXXXXXXXXXPHNLDYMKIQSLSI--EARQKLNKYKPETIGQASRISGVTPAALTLL 1327
P N Y SL I E LN +P TIGQA + G+TP A+ L
Sbjct: 609 LNTFESLDMYKLPQNFTYDNSGSLKISHEVCTILNIVQPTTIGQAQSLQGITPTAINEL 667
>FB|FBgn0034735 [details] [associations]
symbol:CG4610 species:7227 "Drosophila melanogaster"
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0002098 "tRNA wobble uridine modification" evidence=IEA]
HAMAP:MF_00129 InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134
EMBL:AE013599 GO:GO:0005737 GO:GO:0050660 GO:GO:0002098
eggNOG:COG0445 KO:K03495 OMA:AQMSCNP InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280
PROSITE:PS01281 GeneTree:ENSGT00390000011297 EMBL:AY118816
RefSeq:NP_611677.1 UniGene:Dm.13574 SMR:Q9W245 IntAct:Q9W245
MINT:MINT-749650 STRING:Q9W245 EnsemblMetazoa:FBtr0071834
GeneID:37571 KEGG:dme:Dmel_CG4610 UCSC:CG4610-RA
FlyBase:FBgn0034735 InParanoid:Q9W245 OrthoDB:EOG4CZ8WZ
GenomeRNAi:37571 NextBio:804346 Uniprot:Q9W245
Length = 661
Score = 1015 (362.4 bits), Expect = 2.0e-102, P = 2.0e-102
Identities = 245/596 (41%), Positives = 355/596 (59%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ A D SG+ +++LN +G AV RAQ+DR LYK+A++
Sbjct: 80 KGHLMREV----DALDGVCARCCDVSGVHYKVLNRRRGPAVWGPRAQIDRQLYKKAVQQE 135
Query: 817 LENQLNLYLFQEEVDDLIIK------TNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHI 870
L + NL + VD+L+I+ + GV+ G S++V+LTTGTFL I+I
Sbjct: 136 LHSTPNLEIRAAAVDNLLIEDEQDTQARRCTGVLLANGEVVRSRSVVLTTGTFLRAHINI 195
Query: 871 GLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPV 930
GL+ AGR GD +L + + L GRLKTGTPPRI K ++DFS+++ GD P+
Sbjct: 196 GLEVRPAGRIGDAPAKALGEAIDRLGFRMGRLKTGTPPRIAKDSVDFSQLQRHEGDDPPM 255
Query: 931 PVFSVLG-NINLHPK-QLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIED 988
P FS L ++ L K QL C++T+T K +I+R + + +I GPRYCPSIE
Sbjct: 256 P-FSFLNKDVWLPAKDQLPCYLTYTTPKVSDIVRDNLHVNRHVTEEIT--GPRYCPSIES 312
Query: 989 KVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYA 1048
K+ RF K H ++LEPEG+ + YP GIS +LP + Q+ELV +I G++ A +++PGY
Sbjct: 313 KILRFGAKV-HQVWLEPEGLDSSLVYPQGISCTLPHDQQVELVHAIQGLEKAVVVQPGYG 371
Query: 1049 IEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAA---LFSQDRD 1105
+EYD+ +P L +LETK++ GLFFAGQINGTTGYEEAA+QG++AG NAA S R
Sbjct: 372 VEYDFIDPRELYPTLETKRVPGLFFAGQINGTTGYEEAAAQGIIAGANAAGKTRHSDGRQ 431
Query: 1106 PWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVS 1165
I R + Y+GVL+DDL + G EPYRMFTSRAE+RL+LR DNAD+RLT+ G++ G VS
Sbjct: 432 LTI-SRTEGYIGVLIDDLTSLGTNEPYRMFTSRAEFRLSLRPDNADMRLTQKGYEFGLVS 490
Query: 1166 ---YKQWKIFEKKREIITKELQRL-KDTWINPSILNTGESERVLGKRIKHEYSLSNLLTW 1221
Y+ ++ E + + + L+RL K T LN +++ + K S ++L
Sbjct: 491 SDRYQHFQQTEARLQSAIESLRRLRKHTHYWRQALNLPKAKASVEK------SAFDMLGI 544
Query: 1222 PNVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXX 1281
P N T+ L ++ L + + ++ ++LKI+ Y ++ Q
Sbjct: 545 PADNI-TIEQLIHLHPNELSWLK-GERNLAERLKIEALYSFFVDEQQRDVEDVRREERLS 602
Query: 1282 XPHNLDYM-KIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFL 1336
P ++DY K SLS E RQKL +P+TI ASRI GVTP+ + +L Y+K L
Sbjct: 603 IPADIDYFSKSLSLSNEERQKLTLIQPQTIAAASRIQGVTPSTIVRILKYVKKAEL 658
>MGI|MGI:1915541 [details] [associations]
symbol:Mto1 "mitochondrial translation optimization 1
homolog (S. cerevisiae)" species:10090 "Mus musculus" [GO:0002098
"tRNA wobble uridine modification" evidence=IGI] [GO:0003674
"molecular_function" evidence=ND] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0050660 "flavin adenine dinucleotide binding" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0070899
"mitochondrial tRNA wobble uridine modification" evidence=IGI]
InterPro:IPR002218 InterPro:IPR004416 InterPro:IPR013027
Pfam:PF01134 PRINTS:PR00368 MGI:MGI:1915541 GO:GO:0005739
GO:GO:0050660 GO:GO:0055114 eggNOG:COG0445 HOGENOM:HOG000201059
KO:K03495 InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281 GO:GO:0070899
CTD:25821 HOVERGEN:HBG031719 EMBL:AF369902 EMBL:AK019088
IPI:IPI00124893 RefSeq:NP_080934.2 UniGene:Mm.291779
ProteinModelPortal:Q923Z3 SMR:Q923Z3 STRING:Q923Z3
PhosphoSite:Q923Z3 PaxDb:Q923Z3 PRIDE:Q923Z3 GeneID:68291
KEGG:mmu:68291 UCSC:uc009qum.2 InParanoid:Q923Z3 OrthoDB:EOG4J3WGQ
NextBio:326933 Genevestigator:Q923Z3 GermOnline:ENSMUSG00000032342
Uniprot:Q923Z3
Length = 669
Score = 1006 (359.2 bits), Expect = 1.8e-101, P = 1.8e-101
Identities = 239/591 (40%), Positives = 353/591 (59%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ + D+SGI +++LN KG AV RAQ+DR LYKQ ++
Sbjct: 85 KGHLMREV----DALDGLCSRICDQSGIHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKE 140
Query: 817 LENQLNLYLFQEEVDDLIIKT--------NKILGVVTKIGIKFFSKTVILTTGTFLNGKI 868
+ + L + + V+DL++ +++ GVV G ++++VILTTGTFL G I
Sbjct: 141 ILSTPLLTVQKGAVEDLVLAEPEPGYPGKSRVRGVVLADGSTIYAESVILTTGTFLRGMI 200
Query: 869 HIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFD 928
IGL+ + AGR GD + LA+ L++L GRLKTGTPPR+ K +I+FS + + D D
Sbjct: 201 IIGLEMHPAGRLGDQPSIGLAQTLEKLGFMVGRLKTGTPPRLGKESINFSILNKHTPD-D 259
Query: 929 PVPVFSVLGN-INLHPK-QLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESI-GPRYCPS 985
P FS L + + + P+ QL C++THTN + I+ +N + S E+ GPRYCPS
Sbjct: 260 PSIPFSFLSDSVWIKPEDQLPCYLTHTNPRVDAIV---LENLHLNSHVQETTKGPRYCPS 316
Query: 986 IEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRP 1045
IE KV RFP + H ++LEPEG+ + YP G+S +LP E Q +++ I G++ A ++ P
Sbjct: 317 IESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLEKAKMVHP 375
Query: 1046 GYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRD 1105
GY ++YDY +P + SLET + LFFAGQINGTTGYEEAA+QG++AG+NA+L +
Sbjct: 376 GYGVQYDYLDPRQISPSLETHLVQRLFFAGQINGTTGYEEAAAQGVIAGINASLRVSRKP 435
Query: 1106 PWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK-LGCV 1164
P++ R + Y+GVL+DDL T G EPYRMFTSR E+RL+LR DNAD RLT K GCV
Sbjct: 436 PFVVSRTEGYIGVLIDDLTTLGTSEPYRMFTSRVEFRLSLRPDNADTRLTFRAHKEAGCV 495
Query: 1165 SYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNV 1224
S ++++ + + + + LK + S + + S ++L + V
Sbjct: 496 SSQRFERALWMKSSLEEGISVLKSIKFSSSKWKKLIPQIPISINRSLPVSALDVLKYEEV 555
Query: 1225 NYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPH 1284
+ + SL G+ + L +E + ++LKI+ YE + Q PH
Sbjct: 556 D---MESLVGVLPEPLEKYTACRE-LARRLKIEASYESVLSYQLQEIKEVQQDEALQLPH 611
Query: 1285 NLDYMKIQ--SLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
LDY+ I+ SLS E R+KL+ +P+TIG ASRI GVTPAA+ LL +++S
Sbjct: 612 ELDYLTIRDVSLSQEVREKLHLSRPQTIGAASRIPGVTPAAIINLLRFVRS 662
>UNIPROTKB|O53441 [details] [associations]
symbol:glyA1 "Serine hydroxymethyltransferase 1"
species:1773 "Mycobacterium tuberculosis" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IDA] [GO:0005618 "cell
wall" evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0006544 "glycine metabolic process" evidence=IDA] [GO:0006563
"L-serine metabolic process" evidence=IDA] [GO:0030170 "pyridoxal
phosphate binding" evidence=IDA] [GO:0042783 "active evasion of
host immune response" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=IPI] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 UniPathway:UPA00288 GO:GO:0005886
GO:GO:0005737 GO:GO:0005618 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0006544 GO:GO:0035999 GO:GO:0042783
GO:GO:0006545 eggNOG:COG0112 HOGENOM:HOG000239404 KO:K00600
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 PIR:C70896
RefSeq:NP_335569.1 RefSeq:YP_006514462.1 PDB:1LXB PDB:3H7F
PDBsum:1LXB PDBsum:3H7F ProteinModelPortal:O53441 SMR:O53441
PRIDE:O53441 EnsemblBacteria:EBMYCT00000001613
EnsemblBacteria:EBMYCT00000071670 GeneID:13319665 GeneID:924979
KEGG:mtc:MT1125 KEGG:mtu:Rv1093 KEGG:mtv:RVBD_1093 PATRIC:18124236
TubercuList:Rv1093 OMA:PETHRID ProtClustDB:PRK00011 BRENDA:2.1.2.1
EvolutionaryTrace:O53441 Uniprot:O53441
Length = 426
Score = 981 (350.4 bits), Expect = 8.2e-99, P = 8.2e-99
Identities = 188/378 (49%), Positives = 266/378 (70%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L+++DP I E++ KE RQ + +E+IASEN+ AV++AQG++LTNKYAEG PG+RYYGG
Sbjct: 5 LAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRYYGG 64
Query: 68 CKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
C+ +D++E +A +R K +F AE ANVQPHSG+QAN AV ++++PG+ ++G+ L GGHL
Sbjct: 65 CEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANGGHL 124
Query: 128 THGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERF 186
THGM LN SGK + + YG++ ID V A + +PK+IIAG SAY + +DF F
Sbjct: 125 THGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDFAAF 184
Query: 187 YHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYK 246
IA + + +VDMAH+AGL+AAG +P+PVP AD +++T HK+L G R G I+ K++Y
Sbjct: 185 RSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLIVGKQQYA 244
Query: 247 KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL---D--Q 301
K INSAVFPG QGGPLMHVIA KAVA K P+F Q++ + A+I++ L D +
Sbjct: 245 KAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPDVAK 304
Query: 302 RGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRL 361
G+ +VSGGT H++LVDLR+ + G+ AE +L I N+N++PNDP P TSG+R+
Sbjct: 305 AGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGLRI 364
Query: 362 GSSAITTRGFSELEIIKV 379
G+ A+ TRGF + E +V
Sbjct: 365 GTPALATRGFGDTEFTEV 382
>UNIPROTKB|Q9Y2Z2 [details] [associations]
symbol:MTO1 "Protein MTO1 homolog, mitochondrial"
species:9606 "Homo sapiens" [GO:0050660 "flavin adenine
dinucleotide binding" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] [GO:0070899
"mitochondrial tRNA wobble uridine modification" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IEA] InterPro:IPR002218
InterPro:IPR013027 Pfam:PF01134 PRINTS:PR00368 EMBL:AF319422
GO:GO:0005739 GO:GO:0050660 EMBL:CH471051 GO:GO:0055114
EMBL:AL603910 eggNOG:COG0445 KO:K03495 InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 PROSITE:PS01280 PROSITE:PS01281
GO:GO:0070899 EMBL:AF469110 EMBL:AF469111 EMBL:AF442963
EMBL:AY078986 EMBL:AY078985 EMBL:AF132937 EMBL:AK074625
EMBL:AK225828 EMBL:BC005808 EMBL:BC011051 EMBL:AL833823
IPI:IPI00032630 IPI:IPI00180380 IPI:IPI00215953 IPI:IPI00215954
IPI:IPI00233661 IPI:IPI00890773 RefSeq:NP_001116698.1
RefSeq:NP_036255.2 RefSeq:NP_598400.1 UniGene:Hs.347614
ProteinModelPortal:Q9Y2Z2 SMR:Q9Y2Z2 IntAct:Q9Y2Z2 STRING:Q9Y2Z2
PhosphoSite:Q9Y2Z2 DMDM:20981712 PaxDb:Q9Y2Z2 PRIDE:Q9Y2Z2
Ensembl:ENST00000370300 Ensembl:ENST00000370305
Ensembl:ENST00000415954 Ensembl:ENST00000498286 GeneID:25821
KEGG:hsa:25821 UCSC:uc003pgy.4 UCSC:uc003pgz.4 UCSC:uc003pha.4
UCSC:uc010kav.3 CTD:25821 GeneCards:GC06P074171 HGNC:HGNC:19261
HPA:HPA030230 HPA:HPA030232 MIM:614667 MIM:614702
neXtProt:NX_Q9Y2Z2 PharmGKB:PA134974199 HOVERGEN:HBG031719
InParanoid:Q9Y2Z2 OMA:SRKPPFV PhylomeDB:Q9Y2Z2 ChiTaRS:MTO1
GenomeRNAi:25821 NextBio:47075 ArrayExpress:Q9Y2Z2 Bgee:Q9Y2Z2
CleanEx:HS_MTO1 Genevestigator:Q9Y2Z2 Uniprot:Q9Y2Z2
Length = 717
Score = 522 (188.8 bits), Expect = 1.7e-97, Sum P(2) = 1.7e-97
Identities = 124/299 (41%), Positives = 182/299 (60%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ + D+SG+ +++LN KG AV RAQ+DR LYKQ ++
Sbjct: 86 KGHLMREV----DALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKE 141
Query: 817 LENQLNLYLFQEEVDDLIIK------TNK--ILGVVTKIGIKFFSKTVILTTGTFLNGKI 868
+ N L + + V+DLI+ T K + GVV G ++++VILTTGTFL G I
Sbjct: 142 ILNTPLLTVQEGAVEDLILTEPEPEHTGKCRVSGVVLVDGSTVYAESVILTTGTFLRGMI 201
Query: 869 HIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFD 928
IGL+++ AGR GD + LA+ L++L GRLKTGTPPRI K +I+FS + + I D
Sbjct: 202 VIGLETHPAGRLGDQPSIGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKHIPDNP 261
Query: 929 PVPVFSVLGNINLHPK-QLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESI-GPRYCPSI 986
+P + + P+ QL C++THTN + I+ KN + S E+ GPRYCPSI
Sbjct: 262 SIPFSFTNETVWIKPEDQLPCYLTHTNPRVDEIV---LKNLHLNSHVKETTRGPRYCPSI 318
Query: 987 EDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRP 1045
E KV RFP + H ++LEPEG+ + YP G+S +LP E Q +++ I G++ A +I+P
Sbjct: 319 ESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQP 376
Score = 508 (183.9 bits), Expect = 1.7e-97, Sum P(2) = 1.7e-97
Identities = 132/331 (39%), Positives = 192/331 (58%)
Query: 1015 PNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFA 1074
P+G+ LP ++E +I N + PGY ++YDY +P + SLET + LFFA
Sbjct: 376 PDGVLLLLP---RMECNGAISAHHNLPL--PGYGVQYDYLDPRQITPSLETHLVQRLFFA 430
Query: 1075 GQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRM 1134
GQINGTTGYEEAA+QG++AG+NA+L + P++ R + Y+GVL+DDL T G EPYRM
Sbjct: 431 GQINGTTGYEEAAAQGVIAGINASLRVSRKPPFVVSRTEGYIGVLIDDLTTLGTSEPYRM 490
Query: 1135 FTSRAEYRLNLREDNADLRLTEIGWK-LGCVS---YKQ--WKIFEKKREI-ITKELQRLK 1187
FTSR E+RL+LR DNAD RLT G+K GCVS Y++ W + I + K ++ L
Sbjct: 491 FTSRVEFRLSLRPDNADSRLTLRGYKDAGCVSQQRYERACWMKSSLEEGISVLKSIEFLS 550
Query: 1188 DTW---INPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTE 1244
W I + ++T S L R +L ++L + V+ ++L K + T+
Sbjct: 551 SKWKKLIPEASISTSRS---LPVR-----AL-DVLKYEEVDMDSLA--KAVPEPLKKYTK 599
Query: 1245 IYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQ--SLSIEARQKL 1302
++ ++LKI+ YE + Q P +LDY+ I+ SLS E R+KL
Sbjct: 600 C--RELAERLKIEATYESVLFHQLQEIKGVQQDEALQLPKDLDYLTIRDVSLSHEVREKL 657
Query: 1303 NKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
+ +P+TIG ASRI GVTPAA+ LL ++K+
Sbjct: 658 HFSRPQTIGAASRIPGVTPAAIINLLRFVKT 688
Score = 42 (19.8 bits), Expect = 6.5e-46, Sum P(2) = 6.5e-46
Identities = 14/34 (41%), Positives = 19/34 (55%)
Query: 326 TGKIAESILESANI-ICNKNSIPNDPEKPY-FTS 357
TG ES N I NK+ IP++P P+ FT+
Sbjct: 237 TGTPPRIAKESINFSILNKH-IPDNPSIPFSFTN 269
>POMBASE|SPBC30B4.06c [details] [associations]
symbol:SPBC30B4.06c "mitochondrial GIDA family tRNA
uridine 5-carboxymethylaminomethyl modification enzyme (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002098 "tRNA wobble
uridine modification" evidence=ISO] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0006412 "translation" evidence=ISO]
[GO:0032543 "mitochondrial translation" evidence=NAS] [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA]
InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134
PomBase:SPBC30B4.06c GO:GO:0005739 GO:GO:0050660 EMBL:CU329671
GenomeReviews:CU329671_GR GO:GO:0032543 GO:GO:0002098 EMBL:AB004539
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 OMA:AQMSCNP
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 PROSITE:PS01281 PIR:T40172
RefSeq:NP_595531.1 ProteinModelPortal:O13670 IntAct:O13670
STRING:O13670 EnsemblFungi:SPBC30B4.06c.1 GeneID:2540415
KEGG:spo:SPBC30B4.06c OrthoDB:EOG42C1HS NextBio:20801542
Uniprot:O13670
Length = 666
Score = 967 (345.5 bits), Expect = 2.5e-97, P = 2.5e-97
Identities = 231/586 (39%), Positives = 342/586 (58%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG L+ + DA+GG+++ D+S IQF +LN S G AV + RAQ+DR ++K+ ++
Sbjct: 66 KGTLMREI----DALGGVVSGVCDESAIQFHMLNRSNGPAVWSPRAQMDRSVFKKNMQKT 121
Query: 817 LEN-QLNLYLFQEEVDDLIIKTN----KIL-GVVTKIGIKFFSKTVILTTGTFLNGKIHI 870
+ + NL + + + + T ++ +V + G + +++TTGTFL G+I++
Sbjct: 122 ISTYRKNLQVREGAAVSINVLTEDDGKQVCDSIVLEDGTAIPASCIVITTGTFLGGQINV 181
Query: 871 GLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPV 930
GL +AGR+G+ + L+K L L GRLKTGTPPR+ I+ SKM EQ GD P
Sbjct: 182 GLTQLAAGRYGERPSLPLSKCLSNLGFKMGRLKTGTPPRLSS-PINISKMTEQTGDEIP- 239
Query: 931 PVFSVLG-NINLHPK--QLSCFITHTNEKTHNIIRSEFKNSP-IFSGKIESIGPRYCPSI 986
FS L + P Q SC+ T+T E TH I+R +P + +G I + PRYCPS+
Sbjct: 240 ETFSFLNLERDFSPALPQRSCYRTYTTELTHEIVRKNLAFAPHMLAGDI--LSPRYCPSL 297
Query: 987 EDKVYRFPKKKSHHIFLEPEGIVINEY-YPNGISTSLPFEAQIELVQSIDGMKNANIIRP 1045
E KV RFP K H I+LEPEG+ N + YPNG+S S+P E Q +++SI G++N NI+RP
Sbjct: 298 EAKVTRFPHKARHLIWLEPEGLDPNSWWYPNGLSNSMPEEIQHNIIRSIPGLENCNIVRP 357
Query: 1046 GYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRD 1105
Y + YDY P LK++LETK+I GL+ AGQINGTTGYEEAA+QG+LAGLNA L + R+
Sbjct: 358 AYGVMYDYVIPTQLKATLETKKIQGLYLAGQINGTTGYEEAAAQGILAGLNAGLSALGRE 417
Query: 1106 PW-IPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCV 1164
P IP R+ A LGV+VDDLITKG++EPYR+FTSR+EYRL R DNADLRLT + +G +
Sbjct: 418 PVDIP-RNTALLGVMVDDLITKGVKEPYRVFTSRSEYRLTTRADNADLRLTPLAQSIGLL 476
Query: 1165 SYK-QWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPN 1223
+ W+ F++ + ++ + K+ ++P + LG I ++ + W
Sbjct: 477 DDQTHWESFQRTKSLLDFSNKIAKEFILSP------QQWSKLGMPIPNDGKYRS--AWDL 528
Query: 1224 VNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXX-XXXXXXX 1282
+++ L I+ + + + + ++L I+ +Y YI RQ
Sbjct: 529 LSFTNLDLFCVISC--IPKLKDIPKRVLQRLIIEGKYTYYIKRQGTQNKQLNCRDESTVI 586
Query: 1283 PHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLL 1328
P + D+ + S+S E L +P TIGQ RI G+ P + LL
Sbjct: 587 PSDFDFDTLHSVSAEELMLLKTIRPATIGQLKRIQGIKPGTIIRLL 632
>WB|WBGene00009944 [details] [associations]
symbol:F52H3.2 species:6239 "Caenorhabditis elegans"
[GO:0008033 "tRNA processing" evidence=IEA] [GO:0050660 "flavin
adenine dinucleotide binding" evidence=IEA] [GO:0002098 "tRNA
wobble uridine modification" evidence=IEA] [GO:0016491
"oxidoreductase activity" evidence=IEA] [GO:0055114
"oxidation-reduction process" evidence=IEA] InterPro:IPR002218
InterPro:IPR004416 Pfam:PF01134 GO:GO:0050660 GO:GO:0002098
eggNOG:COG0445 HOGENOM:HOG000201059 KO:K03495 InterPro:IPR026904
InterPro:IPR020595 Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01280
PROSITE:PS01281 OMA:SRKPPFV GeneTree:ENSGT00390000011297
EMBL:Z66512 PIR:T22518 RefSeq:NP_496169.1 ProteinModelPortal:Q20680
SMR:Q20680 STRING:Q20680 PaxDb:Q20680 EnsemblMetazoa:F52H3.2.1
EnsemblMetazoa:F52H3.2.2 GeneID:174563 KEGG:cel:CELE_F52H3.2
UCSC:F52H3.2.1 CTD:174563 WormBase:F52H3.2 InParanoid:Q20680
NextBio:884576 Uniprot:Q20680
Length = 638
Score = 964 (344.4 bits), Expect = 5.2e-97, P = 5.2e-97
Identities = 221/587 (37%), Positives = 347/587 (59%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+LI V DA+ G+ A DKS I ++ LN ++G AV RAQ+DR LYK ++
Sbjct: 66 KGHLIREV----DALDGLCARICDKSAITYQALNRAQGPAVLGLRAQIDRKLYKTQMQNE 121
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
+ + L + + EV +L+++ KI+G+ +K V++TTGTFL +I+ G+K++
Sbjct: 122 INSTKRLEILEGEVAELLVENGKIVGIRMMNETVIRTKCVVITTGTFLRAQIYQGMKTWP 181
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
AGR G+ S+ L++ + GRL+TGTPPR+ K +I+FSK E D P+P +
Sbjct: 182 AGRIGEKSSDRLSESFLKHGFELGRLRTGTPPRLMKDSINFSKFERVAPDRTPIPFSFLT 241
Query: 937 GNINL-HPKQLSCFITHTNEKTHNIIRSEF-KNSPIFSGKIESIGPRYCPSIEDKVYRFP 994
N+ + + QL ++ HTN++ I +N + S E+ PRYCPS+E K+ RFP
Sbjct: 242 KNVWISYEDQLPTYLGHTNDEVCRIGNENMHENYQVAS---ETTSPRYCPSLESKLLRFP 298
Query: 995 KKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYF 1054
K H +FLE EG+ YP G+S + E Q +L+++I G++N I +PGY ++YD+
Sbjct: 299 KLH-HRLFLEHEGLDSPHIYPQGMSLTFKPEVQTQLLRAIPGLENVEIFQPGYGVQYDFV 357
Query: 1055 NPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQA 1114
NP LK +LET+++ G+F AGQINGTTGYEEAA+QG++AG+NA+ +Q+ R +
Sbjct: 358 NPKQLKRTLETRKVEGMFLAGQINGTTGYEEAAAQGVVAGINASARAQNEPGMEVSRTEG 417
Query: 1115 YLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIF-E 1173
Y+GVL+DDL + G EPYRM TSRAE+RL LR DNAD+RLTE+G + +S +W IF E
Sbjct: 418 YIGVLIDDLTSLGTNEPYRMLTSRAEFRLYLRPDNADIRLTELGRRHNAISDNRWAIFTE 477
Query: 1174 KKREI--ITKELQRLKDT---W--INPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNY 1226
K E+ +T+ + +K + W I P + T ++ GK + S +L+ +++
Sbjct: 478 TKGELNNLTQRTEEMKMSMVKWKRIIPKLAATSRND---GKVL----SAFDLIHRYDLDK 530
Query: 1227 NTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNL 1286
+ L + KN+ EDI ++LKI+ +Y+ R P N
Sbjct: 531 SDLELC--LKDKNI------GEDILERLKIEGRYQMEHERMKAKKQEIDRESATAIPDNT 582
Query: 1287 DYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
D+ ++ +S+E +KL + +P + A+RISG+TP A+ +L+ +LK+
Sbjct: 583 DFSTMRGMSLECIEKLERARPRNLAAATRISGITPEAIVVLMRHLKN 629
>UNIPROTKB|I3L655 [details] [associations]
symbol:MTO1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0070899 "mitochondrial tRNA wobble uridine
modification" evidence=IEA] [GO:0055114 "oxidation-reduction
process" evidence=IEA] [GO:0050660 "flavin adenine dinucleotide
binding" evidence=IEA] InterPro:IPR002218 InterPro:IPR013027
Pfam:PF01134 PRINTS:PR00368 GO:GO:0005739 GO:GO:0050660
GO:GO:0055114 InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
PROSITE:PS01280 PROSITE:PS01281 GO:GO:0070899 OMA:SRKPPFV
GeneTree:ENSGT00390000011297 EMBL:FP102323
Ensembl:ENSSSCT00000024890 Uniprot:I3L655
Length = 717
Score = 514 (186.0 bits), Expect = 2.8e-96, Sum P(3) = 2.8e-96
Identities = 123/300 (41%), Positives = 182/300 (60%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ + D+SG+ +++LN KG AV RAQ+DR LYKQ ++
Sbjct: 86 KGHLMREV----DALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRNLYKQNMQKE 141
Query: 817 LENQLNLYLFQEEVDDLII------KTNK--ILGVVTKIGIKFFSKTVILTTGTFLNGKI 868
+ N L + + V+DLI+ +T K + GVV G ++ +V+LTTGTFL G I
Sbjct: 142 ILNTPLLTVQEGAVEDLILTEPEPERTGKYRVCGVVLVDGNTVYADSVVLTTGTFLRGVI 201
Query: 869 HIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFD 928
IGL+++ AGR GD + LA+ L++L GRLKTGTPPRI K +I+FS + +Q D
Sbjct: 202 VIGLETHPAGRLGDQPSVGLAQTLEKLGFVVGRLKTGTPPRIAKESINFSILNKQTPDNP 261
Query: 929 PVPVFSVLGN-INLHPK-QLSCFITHTNEKTHNIIRSEFK-NSPIFSGKIESIGPRYCPS 985
+P FS + + + P+ QL C +THTN + I+ N + K + GPRYCPS
Sbjct: 262 SIP-FSFMNETVWIKPEDQLPCHLTHTNPRVDEIVLENLHLNCHV---KETTRGPRYCPS 317
Query: 986 IEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRP 1045
IE KV RFP + H ++LEPEG+ + YP G+S +LP E Q +++ I G++ A +I+P
Sbjct: 318 IESKVLRFPNRL-HQVWLEPEGMDSDLIYPQGLSVTLPAELQEKMITCIRGLEKAKMIQP 376
Score = 512 (185.3 bits), Expect = 2.8e-96, Sum P(3) = 2.8e-96
Identities = 121/294 (41%), Positives = 179/294 (60%)
Query: 1045 PGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDR 1104
PGY ++YDY +P + SLET + LFFAGQINGTTGYEEAA+QG++AG+NA+L + +
Sbjct: 402 PGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGIMAGINASLRVRCK 461
Query: 1105 DPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK-LGC 1163
P++ R + Y+GVL+DDL T G EPYRMFTSRAE+RL+LR DNAD RLT G+K GC
Sbjct: 462 PPFVISRTEGYIGVLIDDLTTLGTNEPYRMFTSRAEFRLSLRPDNADNRLTFRGYKEAGC 521
Query: 1164 VSYKQWKIFEKKREIITKELQRLKDTWINPSILNT--GESERVLGKRIKHEYSLSNLLTW 1221
VS ++++ + + + + LK + S E+ +GK + +L ++L +
Sbjct: 522 VSQQRYERASWMKSSLEEGISVLKSIEFSSSKWKNLIPEASISIGKSVPLR-AL-DVLKY 579
Query: 1222 PNVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXX 1281
V+ +L K + + L +E + ++LKI+ YE + Q
Sbjct: 580 EEVDMKSLA--KAVP-EPLKKYSKCRE-LAERLKIEATYEAVLFHQQQEMKEVQRDEALR 635
Query: 1282 XPHNLDYMKIQ--SLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKS 1333
P +LDY+ ++ SLS E R+KL+ +P+TIG ASRI GVTPAA+ LL ++K+
Sbjct: 636 LPEDLDYLTLRDVSLSYEVREKLHFSRPQTIGAASRIPGVTPAAIINLLRFVKT 689
Score = 37 (18.1 bits), Expect = 2.8e-96, Sum P(3) = 2.8e-96
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 422 RGVGKTTISRILAKCLNCIGIDGNGGITSQP 452
RG G+ + ++ + L G G+G P
Sbjct: 5 RGCGRRVAAFLIKQHLPSAGFSGDGAAPRTP 35
>ZFIN|ZDB-GENE-070209-253 [details] [associations]
symbol:mto1 "mitochondrial translation optimization
1 homolog (S. cerevisiae)" species:7955 "Danio rerio" [GO:0050660
"flavin adenine dinucleotide binding" evidence=IEA] [GO:0008033
"tRNA processing" evidence=IEA] [GO:0002098 "tRNA wobble uridine
modification" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134
ZFIN:ZDB-GENE-070209-253 GO:GO:0050660 GO:GO:0002098 OMA:AQMSCNP
InterPro:IPR026904 InterPro:IPR020595 Pfam:PF13932
TIGRFAMs:TIGR00136 PROSITE:PS01280 GeneTree:ENSGT00390000011297
EMBL:CU652698 EMBL:AL627167 IPI:IPI00772153
Ensembl:ENSDART00000078052 Bgee:F1R509 Uniprot:F1R509
Length = 659
Score = 941 (336.3 bits), Expect = 1.6e-94, P = 1.6e-94
Identities = 233/596 (39%), Positives = 346/596 (58%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ + DA+ G+M A D +GI F ILN SKG AV RAQ+DR YK ++
Sbjct: 76 KGHLVREI----DALDGVMGRAGDWAGIHFSILNRSKGPAVWGLRAQLDRQRYKDFMQSE 131
Query: 817 LENQLNLYLFQEEVDDLIIKT--------NKILGV-VTKIGIKFFSKTVILTTGTFLNGK 867
L + + + + V DL++ +K+ G+ + G + S +V+LTTGTFL+G
Sbjct: 132 LLSTPLVTILEGSVQDLLLTEADPGKPGKHKVYGICLANGGGEIHSSSVVLTTGTFLSGA 191
Query: 868 IHIGLKSYSAGRFGDF-STTSLAKRLKE-LQLSHGRLKTGTPPRIDKRTIDFSKMEEQIG 925
+ +G + GR GD S L+ LK L L GRL+TGTPPRI K +IDFS +
Sbjct: 192 LFMGQNTTPGGRMGDPPSCAGLSHNLKNVLGLKIGRLRTGTPPRIVKDSIDFSLTSVCLP 251
Query: 926 DFDPVPVFSVLGNINLH--PK-QLSCFITHTNEKTHNIIR-SEFKNSPIFSGKIESIGPR 981
D P P FS + N + H PK QL CF+T+T +++ S NS I I+ GPR
Sbjct: 252 DSSPTP-FSFI-NKHTHCTPKEQLPCFLTYTTPGVEKVVKESSHLNSHI-QQDIK--GPR 306
Query: 982 YCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNAN 1041
YCPSIE KV RFP ++ H ++LEPEG+ + YP G+S ++P E Q+ L++ I G+++A
Sbjct: 307 YCPSIESKVLRFPGRQ-HQVWLEPEGLTSSLMYPQGLSMTMPLEMQLRLIREIPGLQHAK 365
Query: 1042 IIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFS 1101
I PGY ++YD+ P L L+ K GLF AGQINGTTGYEEAA+QGL AG+NA S
Sbjct: 366 IQTPGYGVQYDFVCPTQLFPWLQLKNTQGLFLAGQINGTTGYEEAAAQGLWAGVNAGRTS 425
Query: 1102 QDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK- 1160
P R Q+Y+GVL+DDL+ G+ EPYRMFTSRAE+R +LR DNADLRLT G++
Sbjct: 426 LSMSPLSLSRTQSYIGVLIDDLVCHGVTEPYRMFTSRAEFRTSLRPDNADLRLTIRGFEE 485
Query: 1161 LGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRI-KHEYSLSN-- 1217
+GCVS +++ K ++ L++ T + + +++ G I K + S+ N
Sbjct: 486 IGCVSEQRYN----KALLVQASLKQALSTLQSIHLSAARWRDKLGGVTISKTKSSILNGV 541
Query: 1218 -LLTWPNVNYNTLTSLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQXXXXXXXXX 1276
+L + +V + L S + + L+ + +I ++LK++ Y + +Q
Sbjct: 542 EVLQYKDVTFQMLAS----SFQELFGPHL---EISERLKVEALYHPHCEKQRREMEKMQT 594
Query: 1277 XXXXXXPHNLDYMKIQ-SLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYL 1331
P+++DY+ + SLS E R+ L++ +P T+G A+R+ G+TPAA+ L Y+
Sbjct: 595 EESLSLPNDIDYLALPISLSQEVREILDRVRPSTLGAAARLPGITPAAIVHLFNYV 650
>UNIPROTKB|F1NQ08 [details] [associations]
symbol:MTO1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0002098 "tRNA wobble uridine modification"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR002218 InterPro:IPR004416 Pfam:PF01134
GO:GO:0050660 GO:GO:0002098 InterPro:IPR026904 InterPro:IPR020595
Pfam:PF13932 TIGRFAMs:TIGR00136 PROSITE:PS01281
GeneTree:ENSGT00390000011297 EMBL:AADN02002506 IPI:IPI00581250
Ensembl:ENSGALT00000037065 ArrayExpress:F1NQ08 Uniprot:F1NQ08
Length = 645
Score = 932 (333.1 bits), Expect = 1.9e-93, P = 1.9e-93
Identities = 214/514 (41%), Positives = 310/514 (60%)
Query: 839 KILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLS 898
++ GVV G + +VILTTGTFL G I +GL+++ AGR GD LA+ L++L +
Sbjct: 98 QVTGVVLGDGSTVSAGSVILTTGTFLRGVILMGLETHPAGRLGDQPAVGLAQTLEKLGFT 157
Query: 899 HGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGN-INLHPK-QLSCFITHTNEK 956
GRLKTGTPPR+ K TI+FS +EE++ D PVP FS L + + P+ QL C++THTN K
Sbjct: 158 VGRLKTGTPPRLAKDTINFSGLEERVPDNPPVP-FSFLSKAVWIKPEDQLLCYLTHTNLK 216
Query: 957 THNIIRSEFK-NSPIFS--GKIESIGPR------YCPSIEDKVYRFPKKKSHHIFLEPEG 1007
I+ N + G + P YCPS E KV RFP ++ H ++LEPEG
Sbjct: 217 AQQIVLDNLHLNDHVRENEGPPVRMWPHLRLLKAYCPSFESKVLRFPNRE-HQVWLEPEG 275
Query: 1008 IVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQ 1067
+ + YP G+S +LP E Q ++++SI G++ A I++PGY ++YD+ +P L +SLE++
Sbjct: 276 LESDVIYPQGLSMTLPPELQEQVIRSIRGLEKARILQPGYGVQYDFLDPRQLTASLESRL 335
Query: 1068 IHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLITKG 1127
+ LFFAGQINGTTGYEEAA+QG++AG+NA L Q + P+I R + Y+GVL+DDL T G
Sbjct: 336 VQRLFFAGQINGTTGYEEAAAQGVIAGINACLRVQGKPPFIVSRTEGYVGVLIDDLTTLG 395
Query: 1128 IQEPYRMFTSRAEYRLNLREDNADLRLTEIGWK-LGCVSYKQWKIFEKKREIITKELQRL 1186
EPYRMFTSR E+R++LR DNAD RLT G++ GCVS ++++ + R + + L
Sbjct: 396 TTEPYRMFTSRVEFRMSLRPDNADARLTHRGFEEAGCVSQQRYEQAVQMRAALEDGIATL 455
Query: 1187 KDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIY 1246
K + S + E + + S ++L +P N L + I + L +
Sbjct: 456 KSLQFSISKWSHLVPEVPISSNRRSPLSAFDILRYPEANMEILA--RAIP-EPLRKLAEW 512
Query: 1247 QEDIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQ-SLSIEARQKLNKY 1305
+E + ++LKI+ YE ++ Q P ++DY I SLS E R+KLN
Sbjct: 513 RE-LSERLKIEAAYEWCVVNQQQEIEEVRRDEALRLPEDIDYFAIDASLSAEVREKLNSS 571
Query: 1306 KPETIGQASRISGVTPAALTLLLIYLKSGFLKNF 1339
+P+TIG SRI GVTPAA+ LL ++K+ LK F
Sbjct: 572 RPQTIGAVSRIPGVTPAAIINLLRFVKAEKLKAF 605
Score = 362 (132.5 bits), Expect = 1.2e-29, P = 1.2e-29
Identities = 88/215 (40%), Positives = 132/215 (61%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ D +G+ +++LN SKG AV RAQ+DR Y+ ++
Sbjct: 12 KGHLMREV----DALDGLCGRICDVAGVHYKVLNRSKGPAVWGLRAQIDRRRYRDGVQKE 67
Query: 817 LENQLNLYLFQEEVDDLII---KTN-----KILGVVTKIGIKFFSKTVILTTGTFLNGKI 868
+ + L + + V+DL++ +TN ++ GVV G + +VILTTGTFL G I
Sbjct: 68 ILSTPLLTVREASVEDLLLTEPETNHPGKCQVTGVVLGDGSTVSAGSVILTTGTFLRGVI 127
Query: 869 HIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFD 928
+GL+++ AGR GD LA+ L++L + GRLKTGTPPR+ K TI+FS +EE++ D
Sbjct: 128 LMGLETHPAGRLGDQPAVGLAQTLEKLGFTVGRLKTGTPPRLAKDTINFSGLEERVPDNP 187
Query: 929 PVPVFSVLGN-INLHPK-QLSCFITHTNEKTHNII 961
PVP FS L + + P+ QL C++THTN K I+
Sbjct: 188 PVP-FSFLSKAVWIKPEDQLLCYLTHTNLKAQQIV 221
>TAIR|locus:2127806 [details] [associations]
symbol:SHM3 "serine hydroxymethyltransferase 3"
species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0006544 "glycine
metabolic process" evidence=IEA;ISS] [GO:0006563 "L-serine
metabolic process" evidence=IEA;ISS] [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0009570 "chloroplast stroma" evidence=IDA]
[GO:0009536 "plastid" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006164 "purine nucleotide biosynthetic process"
evidence=RCA] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0009570
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CP002687 GO:GO:0008168
GO:GO:0006544 GO:GO:0035999 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 OMA:SKELTGW IPI:IPI00529123 RefSeq:NP_001119098.1
RefSeq:NP_567895.1 UniGene:At.27717 ProteinModelPortal:F4JUC7
SMR:F4JUC7 PRIDE:F4JUC7 EnsemblPlants:AT4G32520.1
EnsemblPlants:AT4G32520.2 GeneID:829387 KEGG:ath:AT4G32520
Uniprot:F4JUC7
Length = 529
Score = 880 (314.8 bits), Expect = 1.5e-87, P = 1.5e-87
Identities = 186/388 (47%), Positives = 252/388 (64%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L ++DP++ II KEK RQ ++ELIASEN+TS AVMEA G+ LTNKY+EG PGKRYYGG
Sbjct: 83 LGEVDPEVRTIITKEKDRQFRSLELIASENFTSRAVMEAVGSCLTNKYSEGLPGKRYYGG 142
Query: 68 CKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
++ID +E + NR F ++ NVQP SGS AN AV+ ++L+P D IMG+ L
Sbjct: 143 NEYIDQLETLCQNRALAAFRLDSTKWGVNVQPLSGSPANFAVYTAILSPHDRIMGLDLPH 202
Query: 124 GGHLTHGMML---NMSGK--WFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAY 177
GGHL+HG M +SG +F S+ Y L++ I DY +E A +PKLIIAGASAY
Sbjct: 203 GGHLSHGFMTAKRRVSGTSIYFESMPYRLDESTGIVDYDMLEKTATLFRPKLIIAGASAY 262
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ D+ R IA ++ ++ M+DMAH +GL+AA +P + D +T+TTHKSLRGPRGG
Sbjct: 263 SRDFDYPRMRKIADSVGAFLMMDMAHISGLVAASVVADPFEYCDIVTTTTHKSLRGPRGG 322
Query: 238 FILMKKK------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291
I +K + +N+AVFPG+QGGP H I AV K P+FK YQK+VV N
Sbjct: 323 MIFFRKDPINGVDLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSPEFKAYQKRVVSN 382
Query: 292 AKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPE 351
+ L+ L + G ++VSGG+ +H++LVDLR + G E IL+ A+I NKNS+P D +
Sbjct: 383 CRALANRLVELGFKLVSGGSDNHLVLVDLRPMGMDGARVEKILDMASITLNKNSVPGD-K 441
Query: 352 KPYFTSGIRLGSSAITTRGFSELEIIKV 379
GIR+GS A+TTRG SE + + V
Sbjct: 442 SALVPGGIRIGSPAMTTRGLSEKDFVVV 469
>UNIPROTKB|Q47XQ9 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 872 (312.0 bits), Expect = 1.1e-86, P = 1.1e-86
Identities = 178/366 (48%), Positives = 243/366 (66%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP NF L+GQ H+ L NAL +KRLHHAYLFTGTRGVGKTTI+RI AK LNC
Sbjct: 5 VLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT +PCGKC C+ ID G F+D +E+DAAS +++ ++L+ YAP R
Sbjct: 65 -----ELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KFILATT+PQK+PITVLSRC+QF+LK +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALT 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L IL+ E + E L L+A A+GSMRD+LSLTDQAI I L ++Q+
Sbjct: 180 VKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQ 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML IDQ ++ Q++ L +QD +++++ +I Y SYS + +
Sbjct: 240 MLGGIDQNWVYQLVITLLKQDSQALMTLSQEIASYAPSYSRLFAELIQLFHQIALMQIVE 299
Query: 680 EILIKDSPNYNEIIQLSKKFN----IEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRM 735
+ D P +++ L KKF+ E +QL+YQIS++GR +L A DE A F MTLLR+
Sbjct: 300 QPF--DLPA--DLLALLKKFSQAMSAEDVQLYYQISLNGRKDLPYAFDEQAAFDMTLLRL 355
Query: 736 LVFQTL 741
F+ +
Sbjct: 356 FAFKPM 361
>TIGR_CMR|CPS_3744 [details] [associations]
symbol:CPS_3744 "DNA polymerase III, gamma/tau subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HOGENOM:HOG000083934
RefSeq:YP_270411.1 ProteinModelPortal:Q47XQ9 SMR:Q47XQ9
STRING:Q47XQ9 GeneID:3522410 KEGG:cps:CPS_3744 PATRIC:21470407
OMA:ICEFLAR BioCyc:CPSY167879:GI48-3766-MONOMER Uniprot:Q47XQ9
Length = 715
Score = 872 (312.0 bits), Expect = 1.1e-86, P = 1.1e-86
Identities = 178/366 (48%), Positives = 243/366 (66%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP NF L+GQ H+ L NAL +KRLHHAYLFTGTRGVGKTTI+RI AK LNC
Sbjct: 5 VLARKWRPKNFQQLMGQEHVVNVLANALSQKRLHHAYLFTGTRGVGKTTIARIFAKSLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT +PCGKC C+ ID G F+D +E+DAAS +++ ++L+ YAP R
Sbjct: 65 -----ELGITDKPCGKCDACIDIDQGRFVDLLEIDAASKTKVDDTREILDNVQYAPSRGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KFILATT+PQK+PITVLSRC+QF+LK +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFILATTDPQKLPITVLSRCLQFHLKALT 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L IL+ E + E L L+A A+GSMRD+LSLTDQAI I L ++Q+
Sbjct: 180 VKQIEDKLAEILSHEQVSHEQGCLTLLAKAARGSMRDSLSLTDQAIAQGQGHINLTNIQQ 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML IDQ ++ Q++ L +QD +++++ +I Y SYS + +
Sbjct: 240 MLGGIDQNWVYQLVITLLKQDSQALMTLSQEIASYAPSYSRLFAELIQLFHQIALMQIVE 299
Query: 680 EILIKDSPNYNEIIQLSKKFN----IEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRM 735
+ D P +++ L KKF+ E +QL+YQIS++GR +L A DE A F MTLLR+
Sbjct: 300 QPF--DLPA--DLLALLKKFSQAMSAEDVQLYYQISLNGRKDLPYAFDEQAAFDMTLLRL 355
Query: 736 LVFQTL 741
F+ +
Sbjct: 356 FAFKPM 361
>POMBASE|SPAC18G6.04c [details] [associations]
symbol:shm2 "serine hydroxymethyltransferase Shm2
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004372
"glycine hydroxymethyltransferase activity" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS;IDA] [GO:0006544 "glycine
metabolic process" evidence=ISS] [GO:0006563 "L-serine metabolic
process" evidence=IEA] [GO:0006730 "one-carbon metabolic process"
evidence=IC] [GO:0009070 "serine family amino acid biosynthetic
process" evidence=ISS] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 PomBase:SPAC18G6.04c
GO:GO:0005739 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0006730 GO:GO:0006544 GO:GO:0035999
eggNOG:COG0112 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
HOGENOM:HOG000239405 PIR:T37918 RefSeq:NP_593668.2 STRING:Q10104
EnsemblFungi:SPAC18G6.04c.1 GeneID:2542242 OrthoDB:EOG4V1B88
NextBio:20803308 GO:GO:0009070 Uniprot:Q10104
Length = 488
Score = 845 (302.5 bits), Expect = 1.1e-83, P = 1.1e-83
Identities = 176/397 (44%), Positives = 251/397 (63%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L++ DP +++I+ EK RQ +I LIASEN+TS AVM+A G+++ NKY+EGYPG RYYGG
Sbjct: 34 LAECDPTVYKILESEKSRQKESIALIASENFTSRAVMDALGSIMQNKYSEGYPGARYYGG 93
Query: 68 CKFIDLIEKIAINRLKKIFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+FID E++ R + F+ + NVQPHSGS AN + +V+ P D +MG+ L
Sbjct: 94 NEFIDQAERLCQTRALEAFHLDGEKWGVNVQPHSGSPANLQAYQAVMKPHDRLMGLDLPH 153
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAY 177
GGHL+HG ++ +F+++ Y +NK+ I DY +E A + +PK+I+AGASAY
Sbjct: 154 GGHLSHGFSTPQKAISAVSTYFSTMPYNVNKETGIIDYDSLEKAAIQFRPKVIVAGASAY 213
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
++ +D++R I + N+Y + DMAH +GL+AAG P+P +AD +T+TTHKSLRGPRG
Sbjct: 214 ARLVDYKRMRKITEMCNAYLLCDMAHISGLVAAGVIPSPFEYADIVTTTTHKSLRGPRGA 273
Query: 238 FILMKK--------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKI 283
I +K + + IN +VFPG QGGP H I A AVA + P+F
Sbjct: 274 MIFYRKGTRSHDKRGNPILYELEDKINFSVFPGHQGGPHNHTITALAVALGQAKTPEFYQ 333
Query: 284 YQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNK 343
YQK V+ NAK ++ RG ++VSGGT +H++LVDL +K + G E ILE NI NK
Sbjct: 334 YQKDVLSNAKAMANAFITRGYKLVSGGTDTHLVLVDLTDKGVDGARVERILELVNISANK 393
Query: 344 NSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
N++P D + G+RLG+ A TTRGF E + +VV
Sbjct: 394 NTVPGD-KSALIPRGLRLGTPACTTRGFDEKDFERVV 429
>SGD|S000000467 [details] [associations]
symbol:SHM1 "Mitochondrial serine hydroxymethyltransferase"
species:4932 "Saccharomyces cerevisiae" [GO:0035999
"tetrahydrofolate interconversion" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA;IDA;IMP] [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0006563 "L-serine metabolic
process" evidence=IEA] [GO:0006544 "glycine metabolic process"
evidence=IEA] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=IEA;IMP] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0006730 "one-carbon metabolic process"
evidence=IEA;IGI;IMP] [GO:0009070 "serine family amino acid
biosynthetic process" evidence=IGI] [GO:0016740 "transferase
activity" evidence=IEA] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 SGD:S000000467
GO:GO:0005739 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:BK006936 EMBL:X70529
EMBL:Z36131 GO:GO:0006730 GO:GO:0006544 GO:GO:0035999
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 HOGENOM:HOG000239405 GeneTree:ENSGT00390000002762
OrthoDB:EOG4V1B88 GO:GO:0009070 EMBL:L22528 PIR:S29348
RefSeq:NP_009822.4 RefSeq:NP_009827.3 ProteinModelPortal:P37292
SMR:P37292 DIP:DIP-4952N IntAct:P37292 MINT:MINT-548725
STRING:P37292 PaxDb:P37292 PeptideAtlas:P37292 PRIDE:P37292
EnsemblFungi:YBR263W GeneID:852565 GeneID:852571 KEGG:sce:YBR263W
KEGG:sce:YBR268W CYGD:YBR263w OMA:GFNENDV
BioCyc:MetaCyc:YBR263W-MONOMER NextBio:971682 Genevestigator:P37292
GermOnline:YBR263W Uniprot:P37292
Length = 490
Score = 827 (296.2 bits), Expect = 7.0e-83, Sum P(2) = 7.0e-83
Identities = 172/397 (43%), Positives = 254/397 (63%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
+S+ DP++++I+ +E+ RQ ++I LI SEN+TS AVM+ G+ L NKY+EGYPG+RYYGG
Sbjct: 33 VSEGDPEMFDILQQERHRQKHSITLIPSENFTSKAVMDLLGSELQNKYSEGYPGERYYGG 92
Query: 68 CKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+ ID E + R +++ + A NVQP SG+ AN V+ +++N G+ +MG+ L +
Sbjct: 93 NEIIDKSESLCQARALELYGLDPAKWGVNVQPLSGAPANLYVYSAIMNVGERLMGLDLPD 152
Query: 124 GGHLTHGMMLNMS------GKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASA 176
GGHL+HG L K+F S+ Y ++ IDY ++ LAK +PK+I+AG SA
Sbjct: 153 GGHLSHGYQLKSGTPISFISKYFQSMPYHVDHTTGLIDYDNLQVLAKAFRPKVIVAGTSA 212
Query: 177 YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG 236
YS+ ID+ RF I++ +Y M DMAH +GL+AA P+P +D +T+TTHKSLRGPRG
Sbjct: 213 YSRLIDYARFKEISQGCGAYLMSDMAHISGLVAANVVPSPFEHSDIVTTTTHKSLRGPRG 272
Query: 237 GFILMKKKYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFK 282
I +K K + IN +VFPG QGGP H I A AVA K+ + P+FK
Sbjct: 273 AMIFFRKGIKSVTKKGKEIPYELEKKINFSVFPGHQGGPHNHTIGAMAVALKQAMSPEFK 332
Query: 283 IYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICN 342
YQ+++V N+K ++ L + G ++VSGGT +H+I++DL ++ G E+IL + NI N
Sbjct: 333 EYQQKIVDNSKWFAQELTKMGYKLVSGGTDNHLIVIDLSGTQVDGARVETILSALNIAAN 392
Query: 343 KNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
KN+IP D + F SG+R+G+ A+TTRGF E +V
Sbjct: 393 KNTIPGD-KSALFPSGLRIGTPAMTTRGFGREEFSQV 428
Score = 37 (18.1 bits), Expect = 7.0e-83, Sum P(2) = 7.0e-83
Identities = 6/25 (24%), Positives = 18/25 (72%)
Query: 1296 IEARQKLNKYKPETIGQASRISGVT 1320
++AR +LN++K + ++S ++ ++
Sbjct: 451 LDARSRLNEFK-KLCNESSEVAALS 474
>TIGR_CMR|CBU_0659 [details] [associations]
symbol:CBU_0659 "DNA polymerase III, gamma and tau
subunits" species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_819689.1
ProteinModelPortal:Q83DN8 SMR:Q83DN8 GeneID:1208544
KEGG:cbu:CBU_0659 PATRIC:17929995 OMA:CETKLLA ProtClustDB:PRK14958
BioCyc:CBUR227377:GJ7S-653-MONOMER Uniprot:Q83DN8
Length = 509
Score = 833 (298.3 bits), Expect = 2.2e-82, P = 2.2e-82
Identities = 169/359 (47%), Positives = 236/359 (65%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F +IGQ + ++L NALD++ LHHAYLFTGTRGVGKTTISRILAKCLNC
Sbjct: 5 VLARKWRPRCFQEVIGQAPVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G+++ PC C C +ID G F D E+DAAS + + +LL+ YAP R
Sbjct: 65 -----EKGVSANPCNDCENCREIDEGRFPDLFEVDAASRTKVEDTRELLDNIPYAPTKGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP ++KFILATT+ K+P+TVLSRC+QF+L ++
Sbjct: 120 FKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFILATTDHHKLPVTVLSRCLQFHLAQLP 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + ++L +EN++FE +AL+L+A A GS+RDALSL DQ+I Y + K+ + ++
Sbjct: 180 PLQIAAHCQHLLKEENVEFENAALDLLARAANGSVRDALSLLDQSIAYGNGKVLIADVKT 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML I+ L IL+ALA + G+ +L ++ + +S L D P
Sbjct: 240 MLGTIEPLLLFDILEALAAKAGDRLLGCVTRLVEQGVDFSNALADLLSLLHQIAIIQTVP 299
Query: 680 EILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
E LI++ ++ QL+K + E +QLFYQI + G+ +L +P GF MTLLRML F
Sbjct: 300 EALIENDSE--QLRQLAKLLDREDVQLFYQIGLIGQRDLAYSPTPQTGFEMTLLRMLAF 356
>TIGR_CMR|SO_2013 [details] [associations]
symbol:SO_2013 "DNA polymerase III, gamma and tau subunits"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HOGENOM:HOG000083934 HSSP:P06710 RefSeq:NP_717619.1
ProteinModelPortal:Q8EFG0 SMR:Q8EFG0 GeneID:1169765
KEGG:son:SO_2013 PATRIC:23523647 OMA:PKSGLEM ProtClustDB:PRK14949
Uniprot:Q8EFG0
Length = 1002
Score = 826 (295.8 bits), Expect = 1.3e-81, P = 1.3e-81
Identities = 169/361 (46%), Positives = 237/361 (65%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP+ F ++GQ+H+ +L NAL ++RLHHAYLFTGTRGVGKT+++R+ AK LNC
Sbjct: 5 VLARKWRPATFEQMVGQSHVLHALTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G+T+ PCG C CV+I G F+D IE+DAAS +++ +LL+ Y P R
Sbjct: 65 -----ETGVTASPCGVCGSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPTRGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ +FNA+LKTLEEPP+++KF+LATT+PQK+P+TVLSRC+QFNLK +
Sbjct: 120 FKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLPVTVLSRCLQFNLKSLT 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
+I L +IL +E + FE AL L+A A GSMRDALSLTDQAI + + LN +Q
Sbjct: 180 QQEIGTQLQHILTQEQLPFEHEALGLLAKSANGSMRDALSLTDQAIAFGGGTVMLNQVQS 239
Query: 620 MLSIIDQKYLIQILDALAEQD-GNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXX 678
ML ID+++++ +L AL + D G L+ S A ++ Y VL+
Sbjct: 240 MLGSIDEQHVLGLLKALTDADIGALMQSCA-QVLAYGADAQEVLRSLLELLHQITLTQFA 298
Query: 679 PEILIKDSPNYNEIIQ-LSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLV 737
P + Y+ IQ +++ EQ+QL+YQI + GR +L APD +G M LLR +
Sbjct: 299 PAAAQQSL--YSAQIQAFAEQLAPEQVQLYYQILLTGRKDLPHAPDPKSGLEMALLRAVA 356
Query: 738 F 738
F
Sbjct: 357 F 357
>DICTYBASE|DDB_G0291652 [details] [associations]
symbol:shmt2 "serine hydroxymethyltransferase 2"
species:44689 "Dictyostelium discoideum" [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0006563 "L-serine metabolic
process" evidence=IEA] [GO:0006544 "glycine metabolic process"
evidence=IEA] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=IEA;ISS] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0006730 "one-carbon metabolic process"
evidence=IEA;ISS] [GO:0005759 "mitochondrial matrix" evidence=ISS]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0035999
"tetrahydrofolate interconversion" evidence=IEA] [GO:0044351
"macropinocytosis" evidence=RCA] UniPathway:UPA00193
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
dictyBase:DDB_G0291652 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:AAFI02000177 GenomeReviews:CM000155_GR GO:GO:0005759
GO:GO:0006730 GO:GO:0006544 GO:GO:0035999 eggNOG:COG0112 KO:K00600
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 OMA:DYLIDMD
HSSP:P34897 ProtClustDB:PTZ00094 RefSeq:XP_635129.1
ProteinModelPortal:Q54EW1 SMR:Q54EW1 STRING:Q54EW1 PRIDE:Q54EW1
EnsemblProtists:DDB0230073 GeneID:8628075 KEGG:ddi:DDB_G0291652
Uniprot:Q54EW1
Length = 481
Score = 813 (291.2 bits), Expect = 3.3e-80, P = 3.3e-80
Identities = 175/398 (43%), Positives = 246/398 (61%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N ++S+ DP+I+++++KEKQRQ +ELIASEN+TS AVME+ G+ TNKYAEG PG RY
Sbjct: 31 NRSVSESDPEIYDLMMKEKQRQFTGLELIASENFTSRAVMESIGSCFTNKYAEGLPGARY 90
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + +D +E + I R + FN NVQP+SGS AN A F +L P D IMG+
Sbjct: 91 YGGNEVVDQLENLCIKRALETFNLNPEEWGVNVQPYSGSTANFAAFTGLLKPHDRIMGLD 150
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGAS 175
L GGHLTHG ++ + +F S+ Y +N+ +DY K+E A +PKL+IAGAS
Sbjct: 151 LPSGGHLTHGYQTDKKKISATSIFFESMPYQVNETGYVDYNKMEANAALFRPKLLIAGAS 210
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY + D+ER IA +Y + DMAH +G++A + +P F D +T+TTHK+LRGPR
Sbjct: 211 AYPREWDYERMRKIADKHGAYLLCDMAHISGMVAGKQAISPFLFCDVVTTTTHKTLRGPR 270
Query: 236 GGFILMKKKYKKI-------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFK 282
G I +K ++ IN AVFP QGGP + IA AVA KE PDF+
Sbjct: 271 AGLIFFRKTKRRDAKGNIIDDDLENRINFAVFPSCQGGPHENTIAGIAVALKEASSPDFQ 330
Query: 283 IYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICN 342
Y KQV +N++ + + L +RG +V+ GT +H++L DLR + ITG E + A+I N
Sbjct: 331 EYTKQVRRNSQTMGEELKKRGYSLVTEGTDNHLVLWDLRPQGITGSKIEKACDEAHITVN 390
Query: 343 KNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
KN++ D G+RLG+ A+T+RG E + +KVV
Sbjct: 391 KNAVYGDTNA-IAPGGVRLGAPALTSRGLKEQDFVKVV 427
>DICTYBASE|DDB_G0277947 [details] [associations]
symbol:shmt1 "serine hydroxymethyltransferase 1"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0006563 "L-serine metabolic process"
evidence=IEA] [GO:0006544 "glycine metabolic process" evidence=IEA]
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=IEA;ISS] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0006730 "one-carbon metabolic process" evidence=IEA;ISS]
[GO:0005829 "cytosol" evidence=ISS] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
dictyBase:DDB_G0277947 GO:GO:0005829 GO:GO:0045335 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 GenomeReviews:CM000152_GR EMBL:AAFI02000023
GO:GO:0006730 GO:GO:0006544 GO:GO:0035999 eggNOG:COG0112 KO:K00600
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 HSSP:P34897
RefSeq:XP_642026.1 ProteinModelPortal:Q54Z26 SMR:Q54Z26
STRING:Q54Z26 EnsemblProtists:DDB0230072 GeneID:8621237
KEGG:ddi:DDB_G0277947 OMA:LKEVASP ProtClustDB:PTZ00094
Uniprot:Q54Z26
Length = 457
Score = 812 (290.9 bits), Expect = 4.2e-80, P = 4.2e-80
Identities = 181/398 (45%), Positives = 245/398 (61%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N L ++D +I+E++ +EK RQ +ELIASEN+TS AVMEA G+ TNKYAEGYPG RY
Sbjct: 7 NTPLKEVDNEIFELMNREKDRQFKGLELIASENFTSRAVMEALGSHFTNKYAEGYPGSRY 66
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + +D +E + R K F + + NVQP+SGS AN AV+ ++L P D IMG+
Sbjct: 67 YGGTEVVDELETLCQKRALKAFRLDESKWGVNVQPYSGSPANFAVYTALLRPHDRIMGLD 126
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGAS 175
L GGHLTHG ++ S +F S+ Y + IDY+++E A KPKLII+GAS
Sbjct: 127 LPSGGHLTHGYQTDKKKISASSIFFESMPYQIGADGLIDYQRLEENALLFKPKLIISGAS 186
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY + D++R IA + +Y M DMAHY+GL+AA +P + D +TSTTHK+LRGPR
Sbjct: 187 AYPREWDYKRMRAIADKVGAYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPR 246
Query: 236 GGFILMKK------KYKKI--------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDF 281
G I ++ K+I IN AVFP +QGGP +VIA AVA KE +F
Sbjct: 247 SGIIFFRRGKRVDGNGKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEF 306
Query: 282 KIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIIC 341
K Y QV KNA + L +G ++V+ GT +H+IL DLR K++TG E + ANI
Sbjct: 307 KEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITV 366
Query: 342 NKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
NKN++ D GIR+GSSA+T+RG E + K+
Sbjct: 367 NKNAVHGDTNA-ISPGGIRIGSSALTSRGLKEADFEKI 403
>UNIPROTKB|Q9KT51 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR021029
InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 OMA:VQLYYQT
ProtClustDB:PRK07994 InterPro:IPR022001 Pfam:PF12168 HSSP:P06710
PIR:H82246 RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 809 (289.8 bits), Expect = 8.9e-80, P = 8.9e-80
Identities = 158/364 (43%), Positives = 232/364 (63%)
Query: 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
+ LARK+RP+ F+ ++GQ+H+ +L NAL + RLHHAYLF+GTRGVGKTTI R+ AK LN
Sbjct: 4 LALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLN 63
Query: 439 CIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA 498
C GIT+ PCG+C+ C +ID G F+D +E+DAAS + + +LL+ Y P
Sbjct: 64 C-----ETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARG 118
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
R+K+Y+IDEVHML+ H+FNA+LKTLEEPP+Y+KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPI 178
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
+I L +L+ E I ++ ALNL+A A GSMRDALSLTDQAI + + + +
Sbjct: 179 SVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVA 238
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXX 678
ML +D + + +L A++ Q ++ + + + +L+
Sbjct: 239 HMLGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQAL 298
Query: 679 PEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
P L K P + I L+K + +QL+YQI++ GR +L L+P G M +LRM+ F
Sbjct: 299 PATLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAF 358
Query: 739 QTLH 742
+ H
Sbjct: 359 RPSH 362
>TIGR_CMR|VC_1054 [details] [associations]
symbol:VC_1054 "DNA polymerase III, subunits gamma and tau"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR021029 InterPro:IPR022754
Pfam:PF12169 Pfam:PF12170 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:VQLYYQT ProtClustDB:PRK07994
InterPro:IPR022001 Pfam:PF12168 HSSP:P06710 PIR:H82246
RefSeq:NP_230699.1 ProteinModelPortal:Q9KT51 SMR:Q9KT51
DNASU:2614324 GeneID:2614324 KEGG:vch:VC1054 PATRIC:20081206
Uniprot:Q9KT51
Length = 692
Score = 809 (289.8 bits), Expect = 8.9e-80, P = 8.9e-80
Identities = 158/364 (43%), Positives = 232/364 (63%)
Query: 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
+ LARK+RP+ F+ ++GQ+H+ +L NAL + RLHHAYLF+GTRGVGKTTI R+ AK LN
Sbjct: 4 LALARKWRPTRFSEVVGQSHVLTALENALAQNRLHHAYLFSGTRGVGKTTIGRLFAKGLN 63
Query: 439 CIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA 498
C GIT+ PCG+C+ C +ID G F+D +E+DAAS + + +LL+ Y P
Sbjct: 64 C-----ETGITATPCGQCATCQEIDQGRFVDLLEIDAASRTKVEDTRELLDNVQYKPARG 118
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
R+K+Y+IDEVHML+ H+FNA+LKTLEEPP+Y+KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 119 RFKVYLIDEVHMLSRHSFNALLKTLEEPPEYVKFLLATTDPQKLPVTILSRCLQFHLKPI 178
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
+I L +L+ E I ++ ALNL+A A GSMRDALSLTDQAI + + + +
Sbjct: 179 SVENIQQQLDKVLHAEQISSDSKALNLLAHAADGSMRDALSLTDQAIALGNGVVKSDIVA 238
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXX 678
ML +D + + +L A++ Q ++ + + + +L+
Sbjct: 239 HMLGTLDTDHSLHLLQAISLQTPQAVMDCIETLAQNGVEWDGLLQQLSTQLHRIAMYQAL 298
Query: 679 PEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
P L K P + I L+K + +QL+YQI++ GR +L L+P G M +LRM+ F
Sbjct: 299 PATLDKSLPEASRIESLAKTLAPQDVQLYYQIALKGRQDLPLSPTARIGIEMLMLRMMAF 358
Query: 739 QTLH 742
+ H
Sbjct: 359 RPSH 362
>UNIPROTKB|P06710 [details] [associations]
symbol:dnaX species:83333 "Escherichia coli K-12"
[GO:0006260 "DNA replication" evidence=IEA;IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IDA] [GO:0043846 "DNA
polymerase III, clamp loader complex" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0030337 "DNA polymerase
processivity factor activity" evidence=IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0006200 "ATP catabolic process"
evidence=IDA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] UniProt:P06710 InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR021029 InterPro:IPR022754 Pfam:PF12169 Pfam:PF12170
PRINTS:PR00300 SMART:SM00382 GO:GO:0005524 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 EMBL:U82664 EMBL:X04487
EMBL:M38777 GO:GO:0003887 eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 EMBL:X04275 PIR:A25549 RefSeq:NP_415003.1
RefSeq:YP_488761.1 PDB:1JR3 PDB:1NJF PDB:1NJG PDB:1XXH PDB:1XXI
PDB:2AYA PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1NJF PDBsum:1NJG PDBsum:1XXH PDBsum:1XXI PDBsum:2AYA
PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH PDBsum:3GLI
ProteinModelPortal:P06710 SMR:P06710 DIP:DIP-9464N IntAct:P06710
MINT:MINT-1222776 PRIDE:P06710 EnsemblBacteria:EBESCT00000003686
EnsemblBacteria:EBESCT00000015762 GeneID:12930852 GeneID:945105
KEGG:ecj:Y75_p0457 KEGG:eco:b0470 PATRIC:32116097 EchoBASE:EB0241
EcoGene:EG10245 HOGENOM:HOG000083934 OMA:VQLYYQT
ProtClustDB:PRK07994 BioCyc:EcoCyc:EG10245-MONOMER
BioCyc:EcoCyc:MONOMER0-2383 BioCyc:ECOL316407:JW0459-MONOMER
BindingDB:P06710 EvolutionaryTrace:P06710 Genevestigator:P06710
GO:GO:0043846 GO:GO:0030337 InterPro:IPR022001 Pfam:PF12168
Length = 643
Score = 791 (283.5 bits), Expect = 5.4e-79, Sum P(2) = 5.4e-79
Identities = 159/360 (44%), Positives = 228/360 (63%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 65 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML +D + +++A+ E +G ++++ N+ + + +L + P
Sbjct: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299
Query: 680 EILIKDSPNYN-EIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
L D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359
Score = 38 (18.4 bits), Expect = 5.4e-79, Sum P(2) = 5.4e-79
Identities = 9/28 (32%), Positives = 13/28 (46%)
Query: 1103 DRDPWIPGRDQAYLGVLVDDLITKGIQE 1130
+RDPW Q L LV+ + +E
Sbjct: 519 ERDPWAAQVSQLSLPKLVEQVALNAWKE 546
>GENEDB_PFALCIPARUM|PFL2115c [details] [associations]
symbol:PFL2115c "glucose inhibited division
protein A homologue, putative" species:5833 "Plasmodium falciparum"
[GO:0020011 "apicoplast" evidence=ISS] InterPro:IPR002218
Pfam:PF01134 GO:GO:0050660 EMBL:AE014188 GO:GO:0008033
GO:GO:0020011 HOGENOM:HOG000201059 InterPro:IPR026904 Pfam:PF13932
RefSeq:XP_001350827.1 ProteinModelPortal:Q8I4Z0
EnsemblProtists:PFL2115c:mRNA GeneID:811475 KEGG:pfa:PFL2115c
EuPathDB:PlasmoDB:PF3D7_1244000 ProtClustDB:CLSZ2733848
Uniprot:Q8I4Z0
Length = 972
Score = 492 (178.3 bits), Expect = 9.7e-78, Sum P(4) = 9.7e-78
Identities = 104/223 (46%), Positives = 145/223 (65%)
Query: 884 STTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINL-- 941
ST ++A++L+E R+KTGTPPR+D +I+F +E + + D FS L N+N
Sbjct: 352 STKNIAQQLRENNFEIKRMKTGTPPRLDINSINFHVLEREDTEKDYPFYFSFL-NMNKIN 410
Query: 942 HPKQLSCFITHTNEKTHNIIRSEFKNSPIFSG--KIESIGPRYCPSIEDKVYRFPKKKSH 999
+ K L C+ T+TN KTH ++R+ P + K + GPRYCPSI KV +F +KK H
Sbjct: 411 NNKTLPCYKTYTNLKTHELVRNNLAQLPDYDSFDKFGN-GPRYCPSIAKKVMKFSEKKKH 469
Query: 1000 HIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNL 1059
I++EPEG YPNG+S++ P Q +++ SI G++NA I+ P Y +EY Y NP L
Sbjct: 470 IIWIEPEGFNNKLIYPNGLSSAYPIHIQKDIINSIKGLENAQIVFPAYDVEYYYVNPKCL 529
Query: 1060 KSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQ 1102
+LETK + GLF AGQI GTTGYEEAA QG++AG+NAAL S+
Sbjct: 530 NYTLETKNVKGLFLAGQICGTTGYEEAACQGIVAGINAALNSK 572
Score = 202 (76.2 bits), Expect = 9.7e-78, Sum P(4) = 9.7e-78
Identities = 55/154 (35%), Positives = 82/154 (53%)
Query: 1096 NAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLT 1155
N + + + + +I R+++Y+GVL+ DLI KGI EPYRMFTSRAEYRL LR DN D+RLT
Sbjct: 589 NHNINNDEVNKFILKRNESYIGVLIHDLINKGITEPYRMFTSRAEYRLFLRPDNCDIRLT 648
Query: 1156 EIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSL 1215
+LG VS ++ + +K + K + K IN N + + K + Y
Sbjct: 649 PKANQLGIVSKERIYMLRQKYSSVNKFIYVFKKILINED--NPNSTYENMNK--SNTYIN 704
Query: 1216 SNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQED 1249
N+ +N L+ I+ N N IY ++
Sbjct: 705 ETKEIKKNIKHNVNQELQHIDKLNPNNL-IYSKN 737
Score = 166 (63.5 bits), Expect = 9.7e-78, Sum P(4) = 9.7e-78
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+DA+GG+M DKSGI F+ILN KG AVR RAQ DR LY ++ YL N NL + +
Sbjct: 145 IDALGGLMGKVIDKSGIHFKILNMKKGLAVRGHRAQADRDLYNYYMKEYLYNTPNLDILE 204
Query: 828 EEVDDLIIKT 837
V L+I T
Sbjct: 205 NSVQSLLIDT 214
Score = 110 (43.8 bits), Expect = 7.5e-36, Sum P(4) = 7.5e-36
Identities = 39/133 (29%), Positives = 58/133 (43%)
Query: 835 IKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE 894
+K KI G+ K + +S VILTTGTFL G HIG Y GR + ++K+
Sbjct: 232 VKKKKIYGIKNKCSCEIYSHNVILTTGTFLGGICHIGKDKYIGGRIKRL-INNFDLKMKK 290
Query: 895 LQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTN 954
+ +KT P I + D K Q G+ + ++ N N K+ + + N
Sbjct: 291 GNIES--IKTNDEPIIKQ---DKLKKINQNGEST---INNMHNNYNEDNKKYINYEENLN 342
Query: 955 EKTHNIIRSEFKN 967
+I S KN
Sbjct: 343 IPFEKLIESSTKN 355
Score = 105 (42.0 bits), Expect = 9.7e-78, Sum P(4) = 9.7e-78
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 1257 QLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMK--IQSLSIEARQKLNKYKPETIGQAS 1314
+++Y Y+ +Q P +L Y + LS E +KLNK+KP+T+ +A+
Sbjct: 886 EIKYSSYLKKQFQEIRKINDNFDLVIPRDLKYDRNNFPYLSNEEIEKLNKFKPQTLFEAN 945
Query: 1315 RISGVTPAALTLLLIYLK 1332
+I GVT +A+ L ++K
Sbjct: 946 KIEGVTMSAVNYLYYHIK 963
Score = 48 (22.0 bits), Expect = 1.1e-61, Sum P(4) = 1.1e-61
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 1173 EKKREIITKELQRLKDTWINPSILNTGESERVL-----GKRIKHEYSLSNLLTWPNVNYN 1227
+ ++ I+ KE +L +N + N+ + + K IK SL N+L V Y
Sbjct: 775 DNEKNILKKE-NKLS---LNTKLFNSKNNSNINYTHHDNKNIK---SLYNILK-SGVEYP 826
Query: 1228 TLTSLKGINGKNLYNTEIYQEDIKKQL 1254
L GI KNL+N E ++ + K +
Sbjct: 827 LNDLLHGI--KNLHNQEQFKNYLSKHI 851
Score = 44 (20.5 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 1212 EYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQE 1248
EY L++LL N + K K++Y+ +IY++
Sbjct: 824 EYPLNDLLHGIK-NLHNQEQFKNYLSKHIYSLDIYKD 859
Score = 40 (19.1 bits), Expect = 3.8e-64, Sum P(5) = 3.8e-64
Identities = 21/93 (22%), Positives = 38/93 (40%)
Query: 575 NIKFETSALNLIATGAQGSMRDALSLTDQAINY--SSEKITLNSMQEMLSI--IDQKYLI 630
N+K + +I G G +S A+ + K T+ M SI I + L+
Sbjct: 84 NVKKNYDVI-VIGGGHSGCEASYISAKSNAMTLLVTQNKETIGEMSCNPSIGGIGKGILV 142
Query: 631 QILDALAEQDGNLILSIANKIEIYNLSYSIVLK 663
+ +DAL G +I +I N+ + ++
Sbjct: 143 KEIDALGGLMGKVIDKSGIHFKILNMKKGLAVR 175
Score = 39 (18.8 bits), Expect = 3.9e-19, Sum P(5) = 3.9e-19
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1164 VSYKQWKIFEKKREIITKELQRLKDTWINPSILNT 1198
++ K K EKK+ II E + + I P+ L++
Sbjct: 456 IAKKVMKFSEKKKHIIWIEPEGFNNKLIYPNGLSS 490
Score = 37 (18.1 bits), Expect = 3.8e-64, Sum P(5) = 3.8e-64
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 762 HAVLTVLDAMGGIMAIATDK--SGIQFRILNS 791
+ +LT +GGI I DK G R++N+
Sbjct: 252 NVILTTGTFLGGICHIGKDKYIGGRIKRLINN 283
>UNIPROTKB|Q8I4Z0 [details] [associations]
symbol:PFL2115c "Glucose inhibited division protein A
homologue, putative" species:36329 "Plasmodium falciparum 3D7"
[GO:0020011 "apicoplast" evidence=ISS] InterPro:IPR002218
Pfam:PF01134 GO:GO:0050660 EMBL:AE014188 GO:GO:0008033
GO:GO:0020011 HOGENOM:HOG000201059 InterPro:IPR026904 Pfam:PF13932
RefSeq:XP_001350827.1 ProteinModelPortal:Q8I4Z0
EnsemblProtists:PFL2115c:mRNA GeneID:811475 KEGG:pfa:PFL2115c
EuPathDB:PlasmoDB:PF3D7_1244000 ProtClustDB:CLSZ2733848
Uniprot:Q8I4Z0
Length = 972
Score = 492 (178.3 bits), Expect = 9.7e-78, Sum P(4) = 9.7e-78
Identities = 104/223 (46%), Positives = 145/223 (65%)
Query: 884 STTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINL-- 941
ST ++A++L+E R+KTGTPPR+D +I+F +E + + D FS L N+N
Sbjct: 352 STKNIAQQLRENNFEIKRMKTGTPPRLDINSINFHVLEREDTEKDYPFYFSFL-NMNKIN 410
Query: 942 HPKQLSCFITHTNEKTHNIIRSEFKNSPIFSG--KIESIGPRYCPSIEDKVYRFPKKKSH 999
+ K L C+ T+TN KTH ++R+ P + K + GPRYCPSI KV +F +KK H
Sbjct: 411 NNKTLPCYKTYTNLKTHELVRNNLAQLPDYDSFDKFGN-GPRYCPSIAKKVMKFSEKKKH 469
Query: 1000 HIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNL 1059
I++EPEG YPNG+S++ P Q +++ SI G++NA I+ P Y +EY Y NP L
Sbjct: 470 IIWIEPEGFNNKLIYPNGLSSAYPIHIQKDIINSIKGLENAQIVFPAYDVEYYYVNPKCL 529
Query: 1060 KSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQ 1102
+LETK + GLF AGQI GTTGYEEAA QG++AG+NAAL S+
Sbjct: 530 NYTLETKNVKGLFLAGQICGTTGYEEAACQGIVAGINAALNSK 572
Score = 202 (76.2 bits), Expect = 9.7e-78, Sum P(4) = 9.7e-78
Identities = 55/154 (35%), Positives = 82/154 (53%)
Query: 1096 NAALFSQDRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLT 1155
N + + + + +I R+++Y+GVL+ DLI KGI EPYRMFTSRAEYRL LR DN D+RLT
Sbjct: 589 NHNINNDEVNKFILKRNESYIGVLIHDLINKGITEPYRMFTSRAEYRLFLRPDNCDIRLT 648
Query: 1156 EIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSL 1215
+LG VS ++ + +K + K + K IN N + + K + Y
Sbjct: 649 PKANQLGIVSKERIYMLRQKYSSVNKFIYVFKKILINED--NPNSTYENMNK--SNTYIN 704
Query: 1216 SNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQED 1249
N+ +N L+ I+ N N IY ++
Sbjct: 705 ETKEIKKNIKHNVNQELQHIDKLNPNNL-IYSKN 737
Score = 166 (63.5 bits), Expect = 9.7e-78, Sum P(4) = 9.7e-78
Identities = 35/70 (50%), Positives = 44/70 (62%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+DA+GG+M DKSGI F+ILN KG AVR RAQ DR LY ++ YL N NL + +
Sbjct: 145 IDALGGLMGKVIDKSGIHFKILNMKKGLAVRGHRAQADRDLYNYYMKEYLYNTPNLDILE 204
Query: 828 EEVDDLIIKT 837
V L+I T
Sbjct: 205 NSVQSLLIDT 214
Score = 110 (43.8 bits), Expect = 7.5e-36, Sum P(4) = 7.5e-36
Identities = 39/133 (29%), Positives = 58/133 (43%)
Query: 835 IKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKE 894
+K KI G+ K + +S VILTTGTFL G HIG Y GR + ++K+
Sbjct: 232 VKKKKIYGIKNKCSCEIYSHNVILTTGTFLGGICHIGKDKYIGGRIKRL-INNFDLKMKK 290
Query: 895 LQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTN 954
+ +KT P I + D K Q G+ + ++ N N K+ + + N
Sbjct: 291 GNIES--IKTNDEPIIKQ---DKLKKINQNGEST---INNMHNNYNEDNKKYINYEENLN 342
Query: 955 EKTHNIIRSEFKN 967
+I S KN
Sbjct: 343 IPFEKLIESSTKN 355
Score = 105 (42.0 bits), Expect = 9.7e-78, Sum P(4) = 9.7e-78
Identities = 24/78 (30%), Positives = 42/78 (53%)
Query: 1257 QLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMK--IQSLSIEARQKLNKYKPETIGQAS 1314
+++Y Y+ +Q P +L Y + LS E +KLNK+KP+T+ +A+
Sbjct: 886 EIKYSSYLKKQFQEIRKINDNFDLVIPRDLKYDRNNFPYLSNEEIEKLNKFKPQTLFEAN 945
Query: 1315 RISGVTPAALTLLLIYLK 1332
+I GVT +A+ L ++K
Sbjct: 946 KIEGVTMSAVNYLYYHIK 963
Score = 48 (22.0 bits), Expect = 1.1e-61, Sum P(4) = 1.1e-61
Identities = 24/87 (27%), Positives = 40/87 (45%)
Query: 1173 EKKREIITKELQRLKDTWINPSILNTGESERVL-----GKRIKHEYSLSNLLTWPNVNYN 1227
+ ++ I+ KE +L +N + N+ + + K IK SL N+L V Y
Sbjct: 775 DNEKNILKKE-NKLS---LNTKLFNSKNNSNINYTHHDNKNIK---SLYNILK-SGVEYP 826
Query: 1228 TLTSLKGINGKNLYNTEIYQEDIKKQL 1254
L GI KNL+N E ++ + K +
Sbjct: 827 LNDLLHGI--KNLHNQEQFKNYLSKHI 851
Score = 44 (20.5 bits), Expect = 2.9e-61, Sum P(4) = 2.9e-61
Identities = 11/37 (29%), Positives = 20/37 (54%)
Query: 1212 EYSLSNLLTWPNVNYNTLTSLKGINGKNLYNTEIYQE 1248
EY L++LL N + K K++Y+ +IY++
Sbjct: 824 EYPLNDLLHGIK-NLHNQEQFKNYLSKHIYSLDIYKD 859
Score = 40 (19.1 bits), Expect = 3.8e-64, Sum P(5) = 3.8e-64
Identities = 21/93 (22%), Positives = 38/93 (40%)
Query: 575 NIKFETSALNLIATGAQGSMRDALSLTDQAINY--SSEKITLNSMQEMLSI--IDQKYLI 630
N+K + +I G G +S A+ + K T+ M SI I + L+
Sbjct: 84 NVKKNYDVI-VIGGGHSGCEASYISAKSNAMTLLVTQNKETIGEMSCNPSIGGIGKGILV 142
Query: 631 QILDALAEQDGNLILSIANKIEIYNLSYSIVLK 663
+ +DAL G +I +I N+ + ++
Sbjct: 143 KEIDALGGLMGKVIDKSGIHFKILNMKKGLAVR 175
Score = 39 (18.8 bits), Expect = 3.9e-19, Sum P(5) = 3.9e-19
Identities = 11/35 (31%), Positives = 19/35 (54%)
Query: 1164 VSYKQWKIFEKKREIITKELQRLKDTWINPSILNT 1198
++ K K EKK+ II E + + I P+ L++
Sbjct: 456 IAKKVMKFSEKKKHIIWIEPEGFNNKLIYPNGLSS 490
Score = 37 (18.1 bits), Expect = 3.8e-64, Sum P(5) = 3.8e-64
Identities = 11/32 (34%), Positives = 17/32 (53%)
Query: 762 HAVLTVLDAMGGIMAIATDK--SGIQFRILNS 791
+ +LT +GGI I DK G R++N+
Sbjct: 252 NVILTTGTFLGGICHIGKDKYIGGRIKRLINN 283
>TAIR|locus:2030581 [details] [associations]
symbol:SHM6 "serine hydroxymethyltransferase 6"
species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA;ISS] [GO:0006544
"glycine metabolic process" evidence=IEA;ISS] [GO:0006563 "L-serine
metabolic process" evidence=IEA;ISS] [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] UniPathway:UPA00193 HAMAP:MF_00051
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PROSITE:PS00096 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0008168 EMBL:AC069252 GO:GO:0006544 GO:GO:0035999
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 HOGENOM:HOG000239405 HSSP:P07511
ProtClustDB:PLN02271 EMBL:AY125514 EMBL:BT004532 IPI:IPI00534805
RefSeq:NP_173621.1 UniGene:At.41627 ProteinModelPortal:Q9LM59
SMR:Q9LM59 STRING:Q9LM59 PaxDb:Q9LM59 PRIDE:Q9LM59
EnsemblPlants:AT1G22020.1 GeneID:838807 KEGG:ath:AT1G22020
TAIR:At1g22020 InParanoid:Q9LM59 OMA:IFGAIGK PhylomeDB:Q9LM59
Genevestigator:Q9LM59 Uniprot:Q9LM59
Length = 599
Score = 539 (194.8 bits), Expect = 1.5e-74, Sum P(2) = 1.5e-74
Identities = 120/253 (47%), Positives = 157/253 (62%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N+++ + DP+I E + KEKQRQ IELIASEN+ AVMEA G+ LTNKY+EG PG RY
Sbjct: 139 NQSIEEADPEIHEFMEKEKQRQFRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARY 198
Query: 65 YGGCKFIDLIEKIAINRLKKIF--NAE--AANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
Y G ++ID IE + R F N E NVQP+S + AN AVF +L PG+ IMG+
Sbjct: 199 YTGNQYIDQIEILCQERALAAFGLNHEKWGVNVQPYSCTSANFAVFTGLLMPGERIMGLD 258
Query: 121 LQEGGHLTHGMML----NMSGK--WFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAG 173
GGH++HG +SG +F S Y ++ + IDY K+E A +PK++I G
Sbjct: 259 SPSGGHMSHGYYTPGGKKVSGASIFFESFPYKVDPRTGYIDYDKLEEKALDYRPKILICG 318
Query: 174 ASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233
S+Y + +F RF HIA + M DMA +GL+AA E PNP + D +TSTTHKSLRG
Sbjct: 319 GSSYPRDWEFPRFRHIADKCGAVLMFDMAQISGLVAAKESPNPFDYCDIVTSTTHKSLRG 378
Query: 234 PRGGFILMKKKYK 246
PRGG I K+ K
Sbjct: 379 PRGGIIFYKRGLK 391
Score = 255 (94.8 bits), Expect = 1.5e-74, Sum P(2) = 1.5e-74
Identities = 56/154 (36%), Positives = 92/154 (59%)
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
+++ IN +VFP +QGGP + IAA A+A K+ P++K+Y +QV KNAK L+ L R
Sbjct: 410 FEEKINFSVFPSLQGGPHNNHIAALAIALKQAASPEYKLYMRQVKKNAKALASALISRKC 469
Query: 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364
++++GGT +H++L DL +TGK+ E + E +I NK +I ++ G+R+GS
Sbjct: 470 KLITGGTDNHLLLWDLTPLGLTGKVYEKVCEMCHITVNKVAIFSE-NGVISPGGVRIGSP 528
Query: 365 AITTRGFSELEIIKVVLARKYRPSNFNTLIGQNH 398
A+T+RG E E + + YR + + + H
Sbjct: 529 AMTSRGCLEPEF-ETMADFLYRAAQIASAAQREH 561
Score = 39 (18.8 bits), Expect = 8.6e-52, Sum P(2) = 8.6e-52
Identities = 16/61 (26%), Positives = 30/61 (49%)
Query: 266 IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKS--HII-LVDLRN 322
I + A+ + L+P+F+ + + A+I S + G ++ KS H + DLRN
Sbjct: 525 IGSPAMTSRGCLEPEFETMADFLYRAAQIASAAQREHG-KLQKEPLKSIYHCKEIADLRN 583
Query: 323 K 323
+
Sbjct: 584 Q 584
>GENEDB_PFALCIPARUM|PFL1720w [details] [associations]
symbol:PFL1720w "Serine
hydroxymethyltransferase" species:5833 "Plasmodium falciparum"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006730
"one-carbon metabolic process" evidence=TAS] HAMAP:MF_00051
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
Pfam:PF00464 PIRSF:PIRSF000412 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:AE014188 GO:GO:0008168 GO:GO:0006730 GO:GO:0006544 KO:K00600
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 HOGENOM:HOG000239405
OMA:IAKLQWA ProtClustDB:PTZ00094 HSSP:P07511 RefSeq:XP_001350750.1
ProteinModelPortal:Q8I566 EnsemblProtists:PFL1720w:mRNA
GeneID:811396 KEGG:pfa:PFL1720w EuPathDB:PlasmoDB:PF3D7_1235600
Uniprot:Q8I566
Length = 442
Score = 740 (265.6 bits), Expect = 2.6e-72, P = 2.6e-72
Identities = 164/397 (41%), Positives = 233/397 (58%)
Query: 2 IIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPG 61
+ N+ L K D ++++++ KEK RQ I LIASEN T+ AV E G ++NKY+EGYP
Sbjct: 1 MFNNDPLQKYDKELFDLLEKEKNRQIETINLIASENLTNTAVRECLGDRISNKYSEGYPH 60
Query: 62 KRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIM 117
KRYYGG ++D IE++ R + FN NVQP SGS AN ++++ IM
Sbjct: 61 KRYYGGNDYVDKIEELCYKRALEAFNVSEEEWGVNVQPLSGSAANVQALYALVGVKGKIM 120
Query: 118 GMSLQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIA 172
GM L GGHLTHG ++++ F S Y N + +D + V LA +PK+II
Sbjct: 121 GMHLCSGGHLTHGFFDEKKKVSITSDLFESKLYKCNSEGYVDMESVRNLALSFQPKVIIC 180
Query: 173 GASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLR 232
G ++Y + ID++ F I +N+Y D++H + +A NP +AD +T+TTHK LR
Sbjct: 181 GYTSYPRDIDYKGFREICDEVNAYLFADISHISSFVACNLLNNPFTYADVVTTTTHKILR 240
Query: 233 GPRGGFILMKKKYK----KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
GPR I KK + INS+VFP QGGP + IAA A KEV P FK Y KQV
Sbjct: 241 GPRSALIFFNKKRNPGIDQKINSSVFPSFQGGPHNNKIAAVACQLKEVNTPFFKEYTKQV 300
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+ N+K L++ L +R + +V+ GT +H+I+VDLR ITG + + NI NKN+IP+
Sbjct: 301 LLNSKALAECLLKRNLDLVTNGTDNHLIVVDLRKYNITGSKLQETCNAINIALNKNTIPS 360
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSE--LEIIKVVLAR 383
D + SGIR+G+ A+TTRG E +E I +L +
Sbjct: 361 DVDC-VSPSGIRIGTPALTTRGCKEKDMEFIADMLLK 396
>UNIPROTKB|Q8I566 [details] [associations]
symbol:PFL1720w "Serine hydroxymethyltransferase"
species:36329 "Plasmodium falciparum 3D7" [GO:0005575
"cellular_component" evidence=ND] [GO:0006730 "one-carbon metabolic
process" evidence=TAS] HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 Pfam:PF00464
PIRSF:PIRSF000412 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:AE014188 GO:GO:0008168 GO:GO:0006730 GO:GO:0006544 KO:K00600
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 HOGENOM:HOG000239405
OMA:IAKLQWA ProtClustDB:PTZ00094 HSSP:P07511 RefSeq:XP_001350750.1
ProteinModelPortal:Q8I566 EnsemblProtists:PFL1720w:mRNA
GeneID:811396 KEGG:pfa:PFL1720w EuPathDB:PlasmoDB:PF3D7_1235600
Uniprot:Q8I566
Length = 442
Score = 740 (265.6 bits), Expect = 2.6e-72, P = 2.6e-72
Identities = 164/397 (41%), Positives = 233/397 (58%)
Query: 2 IIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPG 61
+ N+ L K D ++++++ KEK RQ I LIASEN T+ AV E G ++NKY+EGYP
Sbjct: 1 MFNNDPLQKYDKELFDLLEKEKNRQIETINLIASENLTNTAVRECLGDRISNKYSEGYPH 60
Query: 62 KRYYGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIM 117
KRYYGG ++D IE++ R + FN NVQP SGS AN ++++ IM
Sbjct: 61 KRYYGGNDYVDKIEELCYKRALEAFNVSEEEWGVNVQPLSGSAANVQALYALVGVKGKIM 120
Query: 118 GMSLQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIA 172
GM L GGHLTHG ++++ F S Y N + +D + V LA +PK+II
Sbjct: 121 GMHLCSGGHLTHGFFDEKKKVSITSDLFESKLYKCNSEGYVDMESVRNLALSFQPKVIIC 180
Query: 173 GASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLR 232
G ++Y + ID++ F I +N+Y D++H + +A NP +AD +T+TTHK LR
Sbjct: 181 GYTSYPRDIDYKGFREICDEVNAYLFADISHISSFVACNLLNNPFTYADVVTTTTHKILR 240
Query: 233 GPRGGFILMKKKYK----KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
GPR I KK + INS+VFP QGGP + IAA A KEV P FK Y KQV
Sbjct: 241 GPRSALIFFNKKRNPGIDQKINSSVFPSFQGGPHNNKIAAVACQLKEVNTPFFKEYTKQV 300
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+ N+K L++ L +R + +V+ GT +H+I+VDLR ITG + + NI NKN+IP+
Sbjct: 301 LLNSKALAECLLKRNLDLVTNGTDNHLIVVDLRKYNITGSKLQETCNAINIALNKNTIPS 360
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSE--LEIIKVVLAR 383
D + SGIR+G+ A+TTRG E +E I +L +
Sbjct: 361 DVDC-VSPSGIRIGTPALTTRGCKEKDMEFIADMLLK 396
>TAIR|locus:2035937 [details] [associations]
symbol:SHM7 "serine hydroxymethyltransferase 7"
species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006544 "glycine metabolic process"
evidence=IEA;ISS] [GO:0006563 "L-serine metabolic process"
evidence=IEA;ISS] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0046686 "response to cadmium ion" evidence=IEP]
UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PROSITE:PS00096 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0046686 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 GO:GO:0008168 GO:GO:0006544 GO:GO:0035999
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 HOGENOM:HOG000239405 OMA:IAKLQWA HSSP:P07511
EMBL:BT002738 IPI:IPI00548548 RefSeq:NP_564473.1 UniGene:At.23145
ProteinModelPortal:Q84WV0 STRING:Q84WV0 PaxDb:Q84WV0 PRIDE:Q84WV0
EnsemblPlants:AT1G36370.1 GeneID:840543 KEGG:ath:AT1G36370
TAIR:At1g36370 InParanoid:Q84WV0 PhylomeDB:Q84WV0
ProtClustDB:PLN02271 ArrayExpress:Q84WV0 Genevestigator:Q84WV0
Uniprot:Q84WV0
Length = 598
Score = 510 (184.6 bits), Expect = 2.5e-71, Sum P(2) = 2.5e-71
Identities = 112/243 (46%), Positives = 147/243 (60%)
Query: 12 DPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFI 71
DP I E++ KEKQRQ IELIASEN+ AVMEA G+ LTNKY+EG PG RYY G ++I
Sbjct: 142 DPDIHELMEKEKQRQVRGIELIASENFVCRAVMEALGSHLTNKYSEGMPGARYYTGNQYI 201
Query: 72 DLIEKIAINRLKKIFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
D IE + I R F E+ NVQP+S + AN AV+ +L PG+ IMG+ GGH+
Sbjct: 202 DQIENLCIERALTAFGLESDKWGVNVQPYSCTSANFAVYTGLLLPGERIMGLDSPSGGHM 261
Query: 128 THGMM------LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQY 180
+HG ++ + +F S Y +N + IDY K+E A +PK++I G S+Y +
Sbjct: 262 SHGYCTPGGKKISAASIFFESFPYKVNPQTGYIDYDKLEDKALDYRPKILICGGSSYPRD 321
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
DF R IA + M DMAH +GL+A E NP D +TSTTHK LRGPRGG I
Sbjct: 322 WDFARVRQIADKCGAVLMCDMAHISGLVATKECSNPFDHCDIVTSTTHKGLRGPRGGIIF 381
Query: 241 MKK 243
++
Sbjct: 382 YRR 384
Score = 254 (94.5 bits), Expect = 2.5e-71, Sum P(2) = 2.5e-71
Identities = 55/125 (44%), Positives = 80/125 (64%)
Query: 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS 308
IN AVFP +QGGP + IAA A+A K+V P++K Y +Q+ KNA+ L+ L +R R+V+
Sbjct: 410 INFAVFPSLQGGPHNNHIAALAIALKQVATPEYKAYIQQMKKNAQALAAALLRRKCRLVT 469
Query: 309 GGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITT 368
GGT +H++L DL +TGK+ E + E +I NK +I D G+R+G+ A+TT
Sbjct: 470 GGTDNHLLLWDLTPMGLTGKVYEKVCEMCHITLNKTAIFGD-NGTISPGGVRIGTPAMTT 528
Query: 369 RGFSE 373
RG E
Sbjct: 529 RGCIE 533
Score = 37 (18.1 bits), Expect = 1.8e-48, Sum P(2) = 1.8e-48
Identities = 9/38 (23%), Positives = 19/38 (50%)
Query: 266 IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303
I A+ + ++ DF+ ++K A+I S + + G
Sbjct: 521 IGTPAMTTRGCIESDFETMADFLIKAAQITSALQREHG 558
>TIGR_CMR|SPO_3550 [details] [associations]
symbol:SPO_3550 "DNA polymerase III, gamma and tau
subunits" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
ProtClustDB:PRK09111 InterPro:IPR022107 Pfam:PF12362
RefSeq:YP_168745.1 ProteinModelPortal:Q5LML3 GeneID:3193201
KEGG:sil:SPO3550 PATRIC:23380573 OMA:FTHLVTR Uniprot:Q5LML3
Length = 583
Score = 655 (235.6 bits), Expect = 3.7e-63, P = 3.7e-63
Identities = 137/359 (38%), Positives = 211/359 (58%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARKYRP F L+GQ+ + ++L NA R+ A++ TG RG GKTT +RI+AK +NC
Sbjct: 11 VLARKYRPETFADLVGQDAMVRTLKNAFAADRIAQAFIMTGIRGTGKTTTARIIAKGMNC 70
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
IG DGNGG T++PCGKC CV I G +D +EMDAAS G+N++ ++++ Y +AR
Sbjct: 71 IGPDGNGGPTTEPCGKCEHCVAIMEGRHVDVMEMDAASRTGVNDIREIIDSVRYRAASAR 130
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YKIY+IDEVHML+ AFNA+LKTLEEPP ++KFI ATTE +K+P+TVLSRC +F+L+++
Sbjct: 131 YKIYIIDEVHMLSTSAFNALLKTLEEPPAHVKFIFATTEIRKVPVTVLSRCQRFDLRRIE 190
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
D++ + I + E + AL LI A+GS RDA SL DQAI++ + + + ++
Sbjct: 191 PEDMIALMRRIADAEGAQIAEDALALIVRAAEGSARDATSLLDQAISHGAGETSAEQVRA 250
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXP 679
ML + D+ ++ ++D + D L+ VL+D P
Sbjct: 251 MLGLADRGRVLDLMDMILRGDAGAALTELGAQYAEGADPMAVLRDLAEITHWVSVVKITP 310
Query: 680 EILIKDSPNYNEII---QLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRM 735
+ + + +E Q++ + + +Q+ + E+ AP+ M ++R+
Sbjct: 311 DAAEDPTVSPDERARGQQMADALAMRVLTRMWQMLLKALEEVAAAPNAMMAAEMAVIRL 369
>UNIPROTKB|G4MRB4 [details] [associations]
symbol:MGG_13781 "Serine hydroxymethyltransferase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0008168 EMBL:CM001231 GO:GO:0006544 GO:GO:0035999 KO:K00600
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 RefSeq:XP_003710851.1
ProteinModelPortal:G4MRB4 SMR:G4MRB4 EnsemblFungi:MGG_13781T0
GeneID:5049001 KEGG:mgr:MGG_13781 Uniprot:G4MRB4
Length = 516
Score = 652 (234.6 bits), Expect = 7.7e-63, P = 7.7e-63
Identities = 138/322 (42%), Positives = 199/322 (61%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+ +L DP +++I+ KEKQRQ + I LI SEN+TS AV++A G+ + NKY+EGYPG RY
Sbjct: 40 SSHLQTADPAMYDIVEKEKQRQKHYINLIPSENFTSQAVLDALGSPMQNKYSEGYPGARY 99
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG +FID E++ R + F + NVQ SG+ AN V+ +++ D +MG+
Sbjct: 100 YGGNEFIDQSERLCQQRALETFGLDDKQWGVNVQALSGAPANLYVYSALMGVHDRMMGLD 159
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGA 174
L GGHL+HG ++ K+F ++ Y L++ IDY K+E LA +PK+I+AG
Sbjct: 160 LPHGGHLSHGYQTPTKKISFISKYFETVPYRLDESTGYIDYDKLEELAHIYRPKIIVAGT 219
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
SAYS++ID++R I +N+Y + DMAH +G++AA P P +AD +T+TTHKSLRGP
Sbjct: 220 SAYSRFIDYKRMREICDKVNAYMLADMAHISGMVAAKVIPGPFGYADIVTTTTHKSLRGP 279
Query: 235 RGGFILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279
RG I +K + IN +VFPG QGGP H IAA AVA K+ P
Sbjct: 280 RGAMIFFRKGVRSTNPKTKAEVMYDLENPINQSVFPGHQGGPHNHTIAALAVALKQAQMP 339
Query: 280 DFKIYQKQVVKNAKILSKILDQ 301
+F+ YQ+QV+ NAK ++ L +
Sbjct: 340 EFRAYQEQVLVNAKAFARRLGE 361
Score = 288 (106.4 bits), Expect = 7.7e-22, P = 7.7e-22
Identities = 61/138 (44%), Positives = 87/138 (63%)
Query: 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR------ 302
IN +VFPG QGGP H IAA AVA K+ P+F+ YQ+QV+ NAK ++ L +
Sbjct: 309 INQSVFPGHQGGPHNHTIAALAVALKQAQMPEFRAYQEQVLVNAKAFARRLGEAKGNGGG 368
Query: 303 -GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRL 361
G +IVSGGT +H++L DL+ + I G E +LE I NKN++P D + G+R+
Sbjct: 369 LGYKIVSGGTDNHLVLADLKPQGIDGARVERVLELVGIAANKNTVPGD-KSALTPGGLRM 427
Query: 362 GSSAITTRGFSELEIIKV 379
G+ A+TTRGF E + ++V
Sbjct: 428 GTPAMTTRGFGEDDFVRV 445
>TIGR_CMR|GSU_0094 [details] [associations]
symbol:GSU_0094 "DNA polymerase III, gamma and tau
subunits" species:243231 "Geobacter sulfurreducens PCA" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 HOGENOM:HOG000083933
KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397 HSSP:P28631
RefSeq:NP_951156.1 ProteinModelPortal:Q74GZ9 GeneID:2688299
KEGG:gsu:GSU0094 PATRIC:22022936 OMA:ELIDHFR ProtClustDB:PRK14965
BioCyc:GSUL243231:GH27-55-MONOMER Uniprot:Q74GZ9
Length = 579
Score = 643 (231.4 bits), Expect = 7.1e-62, P = 7.1e-62
Identities = 137/368 (37%), Positives = 214/368 (58%)
Query: 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
+VLARK+RP F+ L GQ H+S++L NA+D R+ HA+LFTG RGVGKT+ +RILAK LN
Sbjct: 4 LVLARKWRPQTFSDLTGQEHVSRTLQNAIDSGRIAHAFLFTGARGVGKTSSARILAKALN 63
Query: 439 CIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA 498
C G++ +PC C C +I G +D +E+D AS G++++ +L E Y P
Sbjct: 64 C-----EQGMSPEPCNVCPACTEITAGTSVDVLEIDGASNTGVDDIRELRENVKYLPSRL 118
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
RYKI++IDEVHML+ +AFNA+LKTLEEPP ++KFI ATTEP K+PIT+LSRC +F+ +++
Sbjct: 119 RYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKLPITILSRCQRFDFRRI 178
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
+V L YI+++E I +L ++A GSMRD+LS+ DQ + + E + + +
Sbjct: 179 PLAKVVARLRYIVDREGISISDESLAVVARKGDGSMRDSLSVLDQVLAFCGETVNDDDVV 238
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI--YNL-SYSIVLKDXXXXXXXXXXX 675
+L ++D++ L++ A+ +D +L + +++ YN+ + L D
Sbjct: 239 SLLGVVDRRLLLEASAAVLGRDTRSVLGVVARVDEFGYNMRQFCGELIDHFRNLTIMRAV 298
Query: 676 XXXPEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFT--MTLL 733
++L + + + +E +Q I + R + ELA Y M L+
Sbjct: 299 GDAGDLLDLSEAELQSVREQASSALLEDLQRHMTILL--RADGELAHSGYPRLVLEMALV 356
Query: 734 RMLVFQTL 741
RM L
Sbjct: 357 RMATLAPL 364
>TAIR|locus:2148463 [details] [associations]
symbol:SHM2 "serine hydroxymethyltransferase 2"
species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA;ISS] [GO:0005739
"mitochondrion" evidence=ISM;IDA] [GO:0006544 "glycine metabolic
process" evidence=IEA;ISS] [GO:0006563 "L-serine metabolic process"
evidence=IEA;ISS] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0050897 "cobalt ion binding" evidence=IDA] [GO:0005747
"mitochondrial respiratory chain complex I" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009744 "response to
sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0005829
EMBL:CP002688 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0008270 GO:GO:0050897
GO:GO:0005747 GO:GO:0008168 GO:GO:0006544 GO:GO:0035999
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 HOGENOM:HOG000239405 OMA:ERFRAIC HSSP:P07511
ProtClustDB:PLN03226 EMBL:BT001097 EMBL:BT001113 IPI:IPI00525834
RefSeq:NP_568488.2 RefSeq:NP_851081.1 UniGene:At.22652
ProteinModelPortal:Q8GRI1 STRING:Q8GRI1 PaxDb:Q8GRI1 PRIDE:Q8GRI1
EnsemblPlants:AT5G26780.2 EnsemblPlants:AT5G26780.3 GeneID:832736
KEGG:ath:AT5G26780 TAIR:At5g26780 InParanoid:Q8GRI1
PhylomeDB:Q8GRI1 Genevestigator:Q8GRI1 Uniprot:Q8GRI1
Length = 533
Score = 642 (231.1 bits), Expect = 9.1e-62, P = 9.1e-62
Identities = 143/337 (42%), Positives = 203/337 (60%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N +L +IDP++ +II EK RQ ELI SEN+TSL+VM+A G+++TNKY+EGYPG RY
Sbjct: 52 NASLDEIDPEVADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARY 111
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG ++ID+ E + R + F + + NVQ SGS AN V+ ++L P + IM +
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFQLDPSKWGVNVQSLSGSPANFQVYTALLKPHERIMALD 171
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGA 174
L GGHL+HG ++ +F ++ Y L++ IDY ++E A +PKLI+AGA
Sbjct: 172 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDENTGYIDYDQLEKSAVLFRPKLIVAGA 231
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
SAY++ D+ R + + + DMAH +GL+AAG P+P +AD +T+TTHKSLRGP
Sbjct: 232 SAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGP 291
Query: 235 RGGFILMKKKYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPD 280
RG I +K K+I IN AVFPG+QGGP H I AVA K+ P+
Sbjct: 292 RGAMIFFRKGLKEINKQGKEVMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPE 351
Query: 281 FKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317
+K YQ QV++N ++ LD R I+S G +L
Sbjct: 352 YKAYQDQVLRNCSKFAE-LDIRPTVIISYGLSMQTLL 387
Score = 271 (100.5 bits), Expect = 6.6e-20, P = 6.6e-20
Identities = 63/151 (41%), Positives = 88/151 (58%)
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAK----------- 293
Y+ IN AVFPG+QGGP H I AVA K+ P++K YQ QV++N
Sbjct: 316 YEDRINQAVFPGLQGGPHNHTITGLAVALKQARTPEYKAYQDQVLRNCSKFAELDIRPTV 375
Query: 294 ILS-----KILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
I+S + L +G +VSGGT +H++LV+L+NK I G E +LE +I NKN++P
Sbjct: 376 IISYGLSMQTLLAKGYDLVSGGTDNHLVLVNLKNKGIDGSRVEKVLELVHIAANKNTVPG 435
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
D GIR+G+ A+T+RGF E + KV
Sbjct: 436 DVSA-MVPGGIRMGTPALTSRGFIEEDFAKV 465
>ASPGD|ASPL0000008876 [details] [associations]
symbol:AN10745 species:162425 "Emericella nidulans"
[GO:0006544 "glycine metabolic process" evidence=IEA] [GO:0006563
"L-serine metabolic process" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0030170
"pyridoxal phosphate binding" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] UniPathway:UPA00193 HAMAP:MF_00051
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PROSITE:PS00096 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 EMBL:BN001301 GO:GO:0008168 GO:GO:0006544
GO:GO:0035999 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
HOGENOM:HOG000239405 OMA:LELTHQF ProteinModelPortal:C8V028
EnsemblFungi:CADANIAT00007210 Uniprot:C8V028
Length = 600
Score = 641 (230.7 bits), Expect = 1.2e-61, P = 1.2e-61
Identities = 145/333 (43%), Positives = 200/333 (60%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP ++ I+ KEK+RQ + I LI SEN+TS AV++A G+++ NKY+EGYPG RYYGG
Sbjct: 130 LEQADPSVYNILQKEKKRQQHFINLIPSENFTSQAVLDALGSVMQNKYSEGYPGARYYGG 189
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+ ID E++ R + F NVQP SGS AN ++LN D +MG+ L
Sbjct: 190 NEHIDEAERLCQQRALETFRLSPEEWGVNVQPLSGSPANLYAISALLNTHDRLMGLDLPH 249
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAY 177
GGHL+HG ++ K+F ++ Y L++ IDY+ +E A +PKLIIAG SAY
Sbjct: 250 GGHLSHGYQTPTKKISFISKYFETLPYRLDESTGLIDYESLEKQALLYRPKLIIAGTSAY 309
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ ID+ R IA N +Y M DMAH +GL+AAG P+P +D +T+TTHKSLRGPRG
Sbjct: 310 SRLIDYPRMRQIADNAGAYLMSDMAHISGLVAAGVIPSPFAHSDVVTTTTHKSLRGPRGA 369
Query: 238 FILMKKKYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKI 283
I +K ++ IN++VFPG QGGP H I A AVA ++ +FK
Sbjct: 370 MIFYRKGIRRTDKKGNQEMYDLEGPINASVFPGHQGGPHNHTITALAVALQQAQSTEFKT 429
Query: 284 YQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316
YQ+ V+ NAK L++ L G SGG +I+
Sbjct: 430 YQETVLANAKSLAERL---GGSTSSGGLGYNIV 459
Score = 270 (100.1 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 61/139 (43%), Positives = 85/139 (61%)
Query: 249 INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR------ 302
IN++VFPG QGGP H I A AVA ++ +FK YQ+ V+ NAK L++ L
Sbjct: 395 INASVFPGHQGGPHNHTITALAVALQQAQSTEFKTYQETVLANAKSLAERLGGSTSSGGL 454
Query: 303 GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPE--KPYFTSGIR 360
G IVSGGT +H++LVDL+N+ + G E +LE + NKN++P D KP G+R
Sbjct: 455 GYNIVSGGTDNHLVLVDLKNRGVDGARVERVLELCGVASNKNTVPGDRSALKP---GGLR 511
Query: 361 LGSSAITTRGFSELEIIKV 379
LG+ A+TTRGF + +V
Sbjct: 512 LGTPAMTTRGFQPEDFRRV 530
>TIGR_CMR|BA_0019 [details] [associations]
symbol:BA_0019 "DNA polymerase III, gamma and tau subunits"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR001270 InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 PRINTS:PR00300 SMART:SM00382 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 RefSeq:NP_842590.1
RefSeq:YP_016623.1 RefSeq:YP_026309.1 ProteinModelPortal:Q81W18
IntAct:Q81W18 DNASU:1089003 EnsemblBacteria:EBBACT00000011079
EnsemblBacteria:EBBACT00000018474 EnsemblBacteria:EBBACT00000022003
GeneID:1089003 GeneID:2819477 GeneID:2849405 KEGG:ban:BA_0019
KEGG:bar:GBAA_0019 KEGG:bat:BAS0021 OMA:QTSHAYL
BioCyc:BANT260799:GJAJ-24-MONOMER BioCyc:BANT261594:GJ7F-25-MONOMER
Uniprot:Q81W18
Length = 562
Score = 630 (226.8 bits), Expect = 1.8e-60, P = 1.8e-60
Identities = 119/271 (43%), Positives = 179/271 (66%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
L R +RP F ++GQ H++K+L NAL ++++ HAYLF+G RG GKTTI+++ AK +NC
Sbjct: 6 LYRTWRPQKFEDVVGQKHVTKTLQNALLQEKVSHAYLFSGPRGTGKTTIAKVFAKAINC- 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
++PC +C C+ I G D +E+DAAS G++E+ + ++ YAP Y
Sbjct: 65 ----EHAPVAEPCNECPSCLGITQGSISDVLEIDAASNNGVDEIRDIRDKVKYAPSAVEY 120
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K+Y+IDEVHML+ AFNA+LKTLEEPP ++ FILATTEP KIP T++SRC +F +K+
Sbjct: 121 KVYIIDEVHMLSMGAFNALLKTLEEPPGHVIFILATTEPHKIPPTIISRCQRFEFRKISV 180
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
+DIV L ++ E + E AL ++A A+G MRDALSL DQAI+YS E++T + +
Sbjct: 181 NDIVERLSTVVTNEGTQVEDEALQIVARAAEGGMRDALSLIDQAISYSDERVTTEDVLAV 240
Query: 621 LSIIDQKYLIQILDALAEQDGNLILSIANKI 651
+ Q+YL +++ + E D + L I +++
Sbjct: 241 TGSVSQQYLGNLVECIRENDVSRALRIIDEM 271
>TIGR_CMR|CJE_1293 [details] [associations]
symbol:CJE_1293 "DNA polymerase III, gamma/tau subunits"
species:195099 "Campylobacter jejuni RM1221" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR012763
SMART:SM00382 GO:GO:0005524 GO:GO:0006260 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 TIGRFAMs:TIGR02397
RefSeq:YP_179281.1 ProteinModelPortal:Q5HTV4 STRING:Q5HTV4
GeneID:3231800 KEGG:cjr:CJE1293 PATRIC:20044382 OMA:EMMLFLK
ProtClustDB:PRK08451 BioCyc:CJEJ195099:GJC0-1319-MONOMER
Uniprot:Q5HTV4
Length = 509
Score = 625 (225.1 bits), Expect = 6.1e-60, P = 6.1e-60
Identities = 131/281 (46%), Positives = 179/281 (63%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
LA KYRP F+ LIGQ +S SL AL+ RL HAYLF+G RG GKT+ +RI ++ L C
Sbjct: 5 LAIKYRPKTFDELIGQKTVSVSLKYALNHNRLAHAYLFSGLRGSGKTSSARIFSRALVC- 63
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
G + PCG C C+ G +D IEMDAAS RG+ ++ L+EQT Y P AR+
Sbjct: 64 ----EQGPSDTPCGTCKHCLAALEGKHIDIIEMDAASNRGLEDIQALIEQTKYTPSMARF 119
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
KI++IDEVHMLT A NA+LKTLEEPP Y+KFILATT+P K+P TVLSR F K++
Sbjct: 120 KIFIIDEVHMLTPQAANALLKTLEEPPSYVKFILATTDPLKLPATVLSRTQHFRFKQIPQ 179
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
+I+N+L IL KEN+KFE AL IA GS+RD L+L DQAI + +I+++ +M
Sbjct: 180 SEILNHLKEILLKENVKFEEEALKFIARSGNGSLRDTLTLLDQAIIFCQNEISISKTTDM 239
Query: 621 LSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIV 661
L +D + + A+ +D + + +++ Y S S++
Sbjct: 240 LGFLDPEKIKAFYQAILTKDKEKVFAYLEELQDYEAS-SVI 279
>FB|FBgn0029823 [details] [associations]
symbol:CG3011 species:7227 "Drosophila melanogaster"
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=ISS] [GO:0006564 "L-serine biosynthetic process"
evidence=ISS] [GO:0005739 "mitochondrion" evidence=ISS] [GO:0030170
"pyridoxal phosphate binding" evidence=IEA] [GO:0006544 "glycine
metabolic process" evidence=IEA] [GO:0048149 "behavioral response
to ethanol" evidence=IMP] UniPathway:UPA00193 HAMAP:MF_00051
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:AE014298 GO:GO:0048149
GO:GO:0006544 GO:GO:0035999 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 GeneTree:ENSGT00390000002762 HSSP:P07511
OMA:VDLRESH UniGene:Dm.11053 GeneID:31524 KEGG:dme:Dmel_CG3011
FlyBase:FBgn0029823 GenomeRNAi:31524 NextBio:774055 EMBL:BT011432
RefSeq:NP_572278.1 SMR:Q9W457 IntAct:Q9W457 MINT:MINT-313386
STRING:Q9W457 EnsemblMetazoa:FBtr0070827 UCSC:CG3011-RA
InParanoid:Q9W457 Uniprot:Q9W457
Length = 537
Score = 606 (218.4 bits), Expect = 2.1e-59, Sum P(2) = 2.1e-59
Identities = 120/246 (48%), Positives = 170/246 (69%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L++ DP++ E+I KEK+RQ +E+IASEN+TS+AV+E+ + LTNKY+EGYPGKRYYGG
Sbjct: 81 LAQGDPELAELIKKEKERQREGLEMIASENFTSVAVLESLSSCLTNKYSEGYPGKRYYGG 140
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
++ID IE +A R +++FN + NVQP+SGS AN AV+ V P D IMG+ L +
Sbjct: 141 NEYIDRIELLAQQRGRELFNLDDEKWGVNVQPYSGSPANLAVYTGVCRPHDRIMGLDLPD 200
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAY 177
GGHLTHG ++ + +F S+ Y +N + I DY K+ AK +P++IIAG S Y
Sbjct: 201 GGHLTHGFFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRPQIIIAGISCY 260
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ +D+ RF I ++ +Y M DMAH AG++AAG P+P +AD +T+TTHK+LRGPR G
Sbjct: 261 SRLLDYARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPFEWADIVTTTTHKTLRGPRAG 320
Query: 238 FILMKK 243
I +K
Sbjct: 321 VIFFRK 326
Score = 558 (201.5 bits), Expect = 9.1e-53, P = 9.1e-53
Identities = 120/271 (44%), Positives = 168/271 (61%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G T ++ + +F S+ Y +N + I DY K+ AK +P++IIAG S YS+ +D+
Sbjct: 207 GFFTPTKKISATSIFFESMPYKVNPETGIIDYDKLAEAAKNFRPQIIIAGISCYSRLLDY 266
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
RF I ++ +Y M DMAH AG++AAG P+P +AD +T+TTHK+LRGPR G I +K
Sbjct: 267 ARFRQICDDVGAYLMADMAHVAGIVAAGLIPSPFEWADIVTTTTHKTLRGPRAGVIFFRK 326
Query: 244 KYK-------KI-------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289
+ K+ IN AVFP +QGGP + +A A AFK+ P+FK YQ QV+
Sbjct: 327 GVRSTKANGDKVLYDLEERINQAVFPSLQGGPHNNAVAGIATAFKQAKSPEFKAYQTQVL 386
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349
KNAK L L RG ++ +GGT H++LVD+R +TG AE ILE I CNKN++P D
Sbjct: 387 KNAKALCDGLISRGYQVATGGTDVHLVLVDVRKAGLTGAKAEYILEEVGIACNKNTVPGD 446
Query: 350 PEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
+ SGIRLG+ A+TTRG +E +I +VV
Sbjct: 447 -KSAMNPSGIRLGTPALTTRGLAEQDIEQVV 476
Score = 43 (20.2 bits), Expect = 2.1e-59, Sum P(2) = 2.1e-59
Identities = 17/55 (30%), Positives = 29/55 (52%)
Query: 774 IMAIATDKS--GIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLF 826
I+ T K+ G + ++ KG VR+T+A D++LY LE ++N +F
Sbjct: 305 IVTTTTHKTLRGPRAGVIFFRKG--VRSTKANGDKVLYD------LEERINQAVF 351
>ZFIN|ZDB-GENE-071213-1 [details] [associations]
symbol:shmt2 "serine hydroxymethyltransferase 2
(mitochondrial)" species:7955 "Danio rerio" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0006544 "glycine metabolic process"
evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA;IDA] [GO:0006563 "L-serine metabolic process"
evidence=IEA] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0032259 "methylation" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 Pfam:PF00464
PIRSF:PIRSF000412 ZFIN:ZDB-GENE-071213-1 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0008168 GO:GO:0006544
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 HOGENOM:HOG000239405 GeneTree:ENSGT00390000002762
HOVERGEN:HBG002807 CTD:6472 EMBL:CABZ01098501 EMBL:CABZ01112226
EMBL:CABZ01112227 EMBL:CABZ01112228 EMBL:CABZ01112229
EMBL:CABZ01112230 EMBL:EF213101 IPI:IPI00862356
RefSeq:NP_001116846.1 UniGene:Dr.128606 SMR:A9LDD9 STRING:A9LDD9
Ensembl:ENSDART00000111064 GeneID:100144628 KEGG:dre:100144628
NextBio:20791462 Uniprot:A9LDD9
Length = 492
Score = 615 (221.5 bits), Expect = 7.2e-59, P = 7.2e-59
Identities = 124/253 (49%), Positives = 170/253 (67%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS+ DP++W+++LKEK RQ +ELIASEN+ S A +EAQG+ L NKY+EGYPGKRYY
Sbjct: 36 ESLSQDDPEMWDLLLKEKDRQCRGLELIASENFCSRAALEAQGSCLNNKYSEGYPGKRYY 95
Query: 66 GGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + NVQP+SGS AN A + +VLNP + IMG+ L
Sbjct: 96 GGAEVVDQIELLCQKRALEAFDLDPQLWGVNVQPYSGSPANFAAYTAVLNPHERIMGLDL 155
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y LN K IDY ++E AK +PKLIIAG S
Sbjct: 156 PDGGHLTHGYMSDVRRISATSIYFESMPYKLNPKTGLIDYDQMELTAKLFRPKLIIAGTS 215
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY++ ID+ R + IN+Y + DMAH +GL+AA P+P AD +T+TTHKSLRG R
Sbjct: 216 AYARLIDYCRIKTLCSEINAYMLADMAHISGLVAAKAIPSPFQHADIVTTTTHKSLRGSR 275
Query: 236 GGFILMKKKYKKI 248
G I +K + +
Sbjct: 276 AGLIFYRKGVRSV 288
Score = 512 (185.3 bits), Expect = 7.6e-48, P = 7.6e-48
Identities = 115/271 (42%), Positives = 164/271 (60%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+++ ++ + +F S+ Y LN K IDY ++E AK +PKLIIAG SAY++ ID+
Sbjct: 164 GYMSDVRRISATSIYFESMPYKLNPKTGLIDYDQMELTAKLFRPKLIIAGTSAYARLIDY 223
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R + IN+Y + DMAH +GL+AA P+P AD +T+TTHKSLRG R G I +K
Sbjct: 224 CRIKTLCSEINAYMLADMAHISGLVAAKAIPSPFQHADIVTTTTHKSLRGSRAGLIFYRK 283
Query: 244 -------KYKKI-------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289
K K+I +N +VFP +QGGP H IA AVA K+ P F+ Y QV+
Sbjct: 284 GVRSVDKKGKEIMYDLEEKVNFSVFPSLQGGPHNHAIAGVAVALKQATSPMFREYIAQVL 343
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349
KN+K ++ L +G +VSGGT +H++LVDLR + + G AE +LE +I NKN+ P D
Sbjct: 344 KNSKAMAAALLDKGYTLVSGGTDNHLVLVDLRPQGMDGARAERVLELVSITANKNTCPGD 403
Query: 350 PEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
+ G+RLG+ A+T+R E + KVV
Sbjct: 404 -KSALTPGGLRLGTPALTSRQLKECDFQKVV 433
>TIGR_CMR|ECH_0014 [details] [associations]
symbol:ECH_0014 "DNA polymerase III, subunits gamma and
tau" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR003583
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00278 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0006260 GO:GO:0006281 GO:GO:0017111 GO:GO:0003887
GO:GO:0009360 eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 RefSeq:YP_506849.1
ProteinModelPortal:Q2GI84 STRING:Q2GI84 GeneID:3926952
KEGG:ech:ECH_0014 PATRIC:20575601 OMA:HPDVIEI ProtClustDB:PRK14964
BioCyc:ECHA205920:GJNR-14-MONOMER Uniprot:Q2GI84
Length = 505
Score = 601 (216.6 bits), Expect = 2.3e-57, P = 2.3e-57
Identities = 126/284 (44%), Positives = 186/284 (65%)
Query: 382 ARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
A KYRPSNF LIGQ + + L NA ++ + L TG GVGKTT +RI++ CLNCI
Sbjct: 17 ALKYRPSNFKDLIGQEVLVRVLHNAFHLNKIPESILLTGISGVGKTTAARIISMCLNCIS 76
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYK 501
G TS PC C C+ I N D IE+DAAS I ++ +LE + Y PI++++K
Sbjct: 77 -----GPTSDPCNTCQNCISIKNFNHPDVIEIDAASNTSIEDVKVILENSRYMPISSKFK 131
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHH 561
+Y+IDEVHML++ AFNA+LK LEEP Y+KFILATTE +KIP+T++SRC +F+ +++
Sbjct: 132 VYIIDEVHMLSNSAFNALLKVLEEPAPYVKFILATTEVKKIPVTIISRCQRFDFQRISTD 191
Query: 562 DIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEML 621
+V++L + KEN+ F+ ++ LIA A GS+R+ALSL +QA YS++ ++ N +EML
Sbjct: 192 KLVDHLKVVAKKENVSFDEESIKLIAYNADGSIRNALSLLEQAAIYSNKILSENITKEML 251
Query: 622 SIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSY-SIVLKD 664
+ + L++I++ L GN ++ NK E SY S+++ D
Sbjct: 252 GYVSRHTLLEIIEPLII--GNATEAL-NKFEEACNSYNSVIILD 292
>UNIPROTKB|Q97RF7 [details] [associations]
symbol:dnaX "DNA polymerase III, gamma and tau subunits"
species:170187 "Streptococcus pneumoniae TIGR4" [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE005672
GenomeReviews:AE005672_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 HSSP:P06710 OMA:QTSHAYL PIR:G95099
RefSeq:NP_345352.1 ProteinModelPortal:Q97RF7
EnsemblBacteria:EBSTRT00000026555 GeneID:930817 KEGG:spn:SP_0865
PATRIC:19706123 Uniprot:Q97RF7
Length = 551
Score = 597 (215.2 bits), Expect = 6.1e-57, P = 6.1e-57
Identities = 123/270 (45%), Positives = 178/270 (65%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
L RKYR NF+ L+GQ ++K+L A++++++ HAYLF+G RG GKT++++I AK +NC
Sbjct: 5 LYRKYRSQNFSQLVGQEVVAKTLKQAVEQEKISHAYLFSGPRGTGKTSVAKIFAKAMNCP 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
+ GG +PC C +C + +G D IEMDAAS G++E+ ++ +++ YAP ARY
Sbjct: 65 --NQVGG---EPCNNCYICQAVTDGSLEDVIEMDAASNNGVDEIREIRDKSTYAPSLARY 119
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K+Y+IDEVHML+ AFNA+LKTLEEP + + FILATTE KIP T+LSR +F K +
Sbjct: 120 KVYIIDEVHMLSTGAFNALLKTLEEPTQNVVFILATTELHKIPATILSRVQRFEFKSIKT 179
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS-EKITLNSMQE 619
DI ++ YIL KENI E A+ +IA A+G MRDALS+ DQA++ + ++T +E
Sbjct: 180 QDIKEHIHYILEKENISSEPEAVEIIARRAEGGMRDALSILDQALSLTQGNELTTAISEE 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIAN 649
+ I L + AL++QD LS N
Sbjct: 240 ITGTISLSALDDYVAALSQQDVPKALSCLN 269
>UNIPROTKB|Q60V73 [details] [associations]
symbol:mel-32 "Serine hydroxymethyltransferase"
species:6238 "Caenorhabditis briggsae" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=TAS] [GO:0005575
"cellular_component" evidence=ND] [GO:0009069 "serine family amino
acid metabolic process" evidence=TAS] [GO:0030170 "pyridoxal
phosphate binding" evidence=TAS] UniPathway:UPA00193
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0006544 GO:GO:0035999
eggNOG:COG0112 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
HOGENOM:HOG000239405 EMBL:HE600934 HSSP:P07511
ProteinModelPortal:Q60V73 STRING:Q60V73 PRIDE:Q60V73
EnsemblMetazoa:CBG19673 WormBase:CBG19673 GO:GO:0009069
Uniprot:Q60V73
Length = 511
Score = 569 (205.4 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 114/253 (45%), Positives = 168/253 (66%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+++ KIDP+++ I+ EK RQ +ELIASEN+TS AVM+A G+ + NKY+EGYPG RYY
Sbjct: 54 DHVEKIDPEVFNIMKNEKSRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYY 113
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG +FID +E + R ++F + A NVQ SGS AN AV+ +++ IMG+ L
Sbjct: 114 GGNEFIDQMEILCQKRALEVFGLDPAKWGVNVQSLSGSPANFAVYTALVGANGRIMGLDL 173
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG ++ + ++F S+ Y ++ + IDY K+E A +PK++IAG S
Sbjct: 174 PDGGHLTHGFFTPARKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVS 233
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
Y++++D+ERF IA +Y M DMAH +GL+AAG P+P ++D +T+TTHKSLRGPR
Sbjct: 234 CYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPR 293
Query: 236 GGFILMKKKYKKI 248
G I +K + +
Sbjct: 294 GAMIFYRKGVRSV 306
Score = 546 (197.3 bits), Expect = 4.0e-54, Sum P(2) = 4.0e-54
Identities = 118/270 (43%), Positives = 168/270 (62%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G T ++ + ++F S+ Y ++ + IDY K+E A +PK++IAG S Y++++D+
Sbjct: 182 GFFTPARKVSATSEFFQSMPYKVDAQSGLIDYDKLEENAMLFRPKVLIAGVSCYARHLDY 241
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
ERF IA +Y M DMAH +GL+AAG P+P ++D +T+TTHKSLRGPRG I +K
Sbjct: 242 ERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGAMIFYRK 301
Query: 244 KYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289
+ + INSAVFPG+QGGP H IA AVA K+ L DF Y +Q++
Sbjct: 302 GVRSVNAKGVETLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALKQCLSEDFVQYGEQIL 361
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349
KNAK L++ L + G + +GGT +H++LVDLR + G AE IL+ A+I CNKN+ P D
Sbjct: 362 KNAKTLAERLKKHGYSLATGGTDNHLLLVDLRPIGVEGARAEHILDLAHIACNKNTCPGD 421
Query: 350 PEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
GIRLG+ A+T+RGF E + KV
Sbjct: 422 VSA-LRPGGIRLGTPALTSRGFKEQDFEKV 450
Score = 54 (24.1 bits), Expect = 1.4e-56, Sum P(2) = 1.4e-56
Identities = 26/87 (29%), Positives = 36/87 (41%)
Query: 897 LSHGRLKTGTPPRIDKRTIDFSKME-EQIGDFDPVPVFSVLGNINLHP-KQLSCF--ITH 952
L G ++ GTP + F + + E++GDF V + N K L F T
Sbjct: 425 LRPGGIRLGTPALTSR---GFKEQDFEKVGDFIHEGV-QIAKKYNAEAGKTLKDFKAFTA 480
Query: 953 TNEKTHNIIRSEFKNSPIFSGKIESIG 979
TNE+ + K FSGK E G
Sbjct: 481 TNEQFKQEVAELAKRVEEFSGKFEIPG 507
>UNIPROTKB|P09122 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AL009126
GenomeReviews:AL009126_GR GO:GO:0017111 GO:GO:0003887 EMBL:D26185
GO:GO:0009360 EMBL:X17014 EMBL:X06803 EMBL:X52144 PIR:I40469
PIR:S13786 RefSeq:NP_387900.2 ProteinModelPortal:P09122 SMR:P09122
IntAct:P09122 EnsemblBacteria:EBBACT00000003868 GeneID:936899
KEGG:bsu:BSU00190 PATRIC:18971499 GenoList:BSU00190 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 ProtClustDB:PRK05563
BioCyc:BSUB:BSU00190-MONOMER SUPFAM:SSF48019 TIGRFAMs:TIGR02397
Uniprot:P09122
Length = 563
Score = 590 (212.7 bits), Expect = 3.4e-56, P = 3.4e-56
Identities = 115/271 (42%), Positives = 176/271 (64%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
L R +RP F ++GQ HI+K+L NAL +K+ HAYLF+G RG GKT+ ++I AK +NC
Sbjct: 6 LYRVFRPQRFEDVVGQEHITKTLQNALLQKKFSHAYLFSGPRGTGKTSAAKIFAKAVNC- 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
+PC +C+ C I NG D IE+DAAS G++E+ + ++ +AP Y
Sbjct: 65 ----EHAPVDEPCNECAACKGITNGSISDVIEIDAASNNGVDEIRDIRDKVKFAPSAVTY 120
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K+Y+IDEVHML+ AFNA+LKTLEEPP++ FILATTEP KIP+T++SRC +F+ K++
Sbjct: 121 KVYIIDEVHMLSIGAFNALLKTLEEPPEHCIFILATTEPHKIPLTIISRCQRFDFKRITS 180
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
IV + I++ E ++ E +L +IA+ A G MRDALSL DQAI++S + + + +
Sbjct: 181 QAIVGRMNKIVDAEQLQVEEGSLEIIASAADGGMRDALSLLDQAISFSGDILKVEDALLI 240
Query: 621 LSIIDQKYLIQILDALAEQDGNLILSIANKI 651
+ Q Y+ ++ +L +++ + L N++
Sbjct: 241 TGAVSQLYIGKLAKSLHDKNVSDALETLNEL 271
>TIGR_CMR|CHY_2675 [details] [associations]
symbol:CHY_2675 "putative DNA polymerase III, gamma/tau
subunits" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006260 "DNA replication" evidence=ISS] InterPro:IPR001270
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_361464.1 ProteinModelPortal:Q3A8S0
STRING:Q3A8S0 GeneID:3728788 KEGG:chy:CHY_2675 PATRIC:21278371
OMA:DICHAIN BioCyc:CHYD246194:GJCN-2674-MONOMER Uniprot:Q3A8S0
Length = 511
Score = 590 (212.7 bits), Expect = 3.4e-56, P = 3.4e-56
Identities = 116/275 (42%), Positives = 181/275 (65%)
Query: 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
+ L RK+RP F+ ++GQ I K L NA+ ++ HAYLF+G RG GKTT +++LAK +N
Sbjct: 3 LALYRKWRPKTFSEIVGQETIVKILKNAVATMQVAHAYLFSGPRGTGKTTTAKVLAKAVN 62
Query: 439 CIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA 498
C + +PC +C C+ I+N ++ E+DAAS RGI+E+ +L E P
Sbjct: 63 C-----EHPVEGEPCNQCPSCIGINNQSLLNVFEIDAASNRGIDEIRELRESIKLVPAQG 117
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
+YK+Y+IDEVHMLT+ AFNA+LKTLEEPP+++ FILATTE K+P+T++SRC +F+ K++
Sbjct: 118 KYKVYIIDEVHMLTNEAFNALLKTLEEPPEHVIFILATTEFNKVPVTIVSRCQRFDFKRI 177
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
I +L I KE +++E AL+LIA ++G +RDALSL DQ + ++ KIT+
Sbjct: 178 STKTIWEHLKNIAEKEKLQYEAEALHLIAEASEGGLRDALSLMDQILVFNP-KITVEDTL 236
Query: 619 EMLSIIDQKYLIQILDALAEQDG-NLILSIANKIE 652
++L + + +++++ A+ E + +I IA +E
Sbjct: 237 KVLGFVSWRKILELISAIRENNQLKIINEIAEVVE 271
>UNIPROTKB|P34897 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0008168 "methyltransferase
activity" evidence=IEA] [GO:0005758 "mitochondrial intermembrane
space" evidence=IEA] [GO:0006564 "L-serine biosynthetic process"
evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0008732 "L-allo-threonine aldolase
activity" evidence=IEA] [GO:0016597 "amino acid binding"
evidence=IEA] [GO:0019264 "glycine biosynthetic process from
serine" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0051289 "protein homotetramerization"
evidence=IEA] [GO:0035999 "tetrahydrofolate interconversion"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0004372
"glycine hydroxymethyltransferase activity" evidence=IDA]
[GO:0006730 "one-carbon metabolic process" evidence=IDA]
[GO:0005759 "mitochondrial matrix" evidence=IDA] [GO:0005743
"mitochondrial inner membrane" evidence=IDA] [GO:0003682 "chromatin
binding" evidence=IDA] [GO:0042645 "mitochondrial nucleoid"
evidence=IDA] [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
UniPathway:UPA00193 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0005743 GO:GO:0005758 GO:GO:0008284
EMBL:CH471054 DrugBank:DB00114 GO:GO:0003682 GO:GO:0016597
GO:GO:0051289 GO:GO:0042645 DrugBank:DB00145 DrugBank:DB00116
GO:GO:0008168 GO:GO:0006730 GO:GO:0035999 GO:GO:0006564
GO:GO:0008732 eggNOG:COG0112 KO:K00600 GO:GO:0004372
PANTHER:PTHR11680 OMA:GKIDYED HOGENOM:HOG000239405 GO:GO:0019264
HOVERGEN:HBG002807 CTD:6472 EMBL:AK315916 EMBL:BT006866
EMBL:AC137834 EMBL:BC011911 EMBL:BC013677 EMBL:BC032584
EMBL:BC044211 EMBL:Y12331 EMBL:U23143 EMBL:L11932 IPI:IPI00002520
IPI:IPI00795816 PIR:B46746 RefSeq:NP_001159828.1
RefSeq:NP_001159829.1 RefSeq:NP_001159830.1 RefSeq:NP_001159831.1
RefSeq:NP_005403.2 UniGene:Hs.741179 PDB:3OU5 PDBsum:3OU5
ProteinModelPortal:P34897 SMR:P34897 IntAct:P34897 STRING:P34897
PhosphoSite:P34897 DMDM:6226865 PaxDb:P34897 PRIDE:P34897
DNASU:6472 Ensembl:ENST00000328923 Ensembl:ENST00000414700
Ensembl:ENST00000449049 Ensembl:ENST00000553474
Ensembl:ENST00000557487 GeneID:6472 KEGG:hsa:6472 UCSC:uc001snf.2
GeneCards:GC12P057623 HGNC:HGNC:10852 HPA:HPA020543 HPA:HPA020549
MIM:138450 neXtProt:NX_P34897 PharmGKB:PA35755 InParanoid:P34897
PhylomeDB:P34897 BioCyc:MetaCyc:HS00049-MONOMER ChiTaRS:SHMT2
EvolutionaryTrace:P34897 GenomeRNAi:6472 NextBio:25141
ArrayExpress:P34897 Bgee:P34897 CleanEx:HS_SHMT2
Genevestigator:P34897 GermOnline:ENSG00000182199 Uniprot:P34897
Length = 504
Score = 582 (209.9 bits), Expect = 2.5e-55, P = 2.5e-55
Identities = 117/253 (46%), Positives = 166/253 (65%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 47 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+ L
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 166
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG S
Sbjct: 167 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 226
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R
Sbjct: 227 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGAR 286
Query: 236 GGFILMKKKYKKI 248
G I +K K +
Sbjct: 287 SGLIFYRKGVKAV 299
Score = 503 (182.1 bits), Expect = 7.0e-47, P = 7.0e-47
Identities = 111/272 (40%), Positives = 162/272 (59%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+++ ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG SAY++ ID+
Sbjct: 175 GYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDY 234
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R G I +K
Sbjct: 235 ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRK 294
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
K + IN AVFP +QGGP H IAA AVA K+ P F+ Y QV
Sbjct: 295 GVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQV 354
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE +I NKN+ P
Sbjct: 355 LKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPG 414
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
D G+RLG+ A+T+R F E + +VV
Sbjct: 415 D-RSAITPGGLRLGAPALTSRQFREDDFRRVV 445
>TIGR_CMR|APH_1348 [details] [associations]
symbol:APH_1348 "DNA polymerase III, subunits gamma and
tau" species:212042 "Anaplasma phagocytophilum HZ" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 OMA:TCARIVS ProtClustDB:PRK14964
RefSeq:YP_505851.1 ProteinModelPortal:Q2GIF0 STRING:Q2GIF0
GeneID:3930792 KEGG:aph:APH_1348 PATRIC:20951496
BioCyc:APHA212042:GHPM-1348-MONOMER Uniprot:Q2GIF0
Length = 456
Score = 582 (209.9 bits), Expect = 2.5e-55, P = 2.5e-55
Identities = 134/364 (36%), Positives = 211/364 (57%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
LA KYRPSNF+ L+GQ+ + + L N+ L+ L G GVGKTT +RI++ CLNC
Sbjct: 3 LALKYRPSNFDDLVGQDVLVRILRNSFSVGNLNTPLLMVGASGVGKTTCARIVSLCLNC- 61
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
G TS PCG C+ C I N D +EMDAAS ++++ +LE + Y P+++R+
Sbjct: 62 ----ENGPTSSPCGTCATCTSIKNSHNPDVVEMDAASNTSVDDIRVILESSNYLPVSSRF 117
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K+Y+IDEVHML+ AFNA+LKTLE P ++ KFI+ATTE +K+P+TV SRC++ +L K+
Sbjct: 118 KVYIIDEVHMLSTSAFNALLKTLESPAQHAKFIMATTEVRKVPVTVASRCLRLDLGKLPI 177
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
+ ++L I KENI + S+L LIA + GS+R++L L +QA+ YS+ KI+L ++E+
Sbjct: 178 KQLYDHLVKISAKENIAHDESSLMLIAENSSGSVRNSLFLLEQALIYSNNKISLQEVREL 237
Query: 621 LSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXXPE 680
L +D+K L I+ + D + +I E+ N S +++ +
Sbjct: 238 LGCVDKKILEGIVRDIISSD--VKSAIDGFRELCNASTPVIIFEGMQKVVYGLCMYS--- 292
Query: 681 ILIKDSPNY--NEIIQLSKKFNIEQIQLFYQISIHGRNELELAPD-EYAGFTMTLLRMLV 737
+ KD + E+ K + + +Q+ +HG E++ + E AG M ++R+
Sbjct: 293 -IDKDFHHGLGEELFTAEKSGSTPFLSRLWQLVLHGIQEIKSSESPEQAG-EMLIVRLCY 350
Query: 738 FQTL 741
L
Sbjct: 351 LSDL 354
>WB|WBGene00003214 [details] [associations]
symbol:mel-32 species:6239 "Caenorhabditis elegans"
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=IEA] [GO:0006544 "glycine metabolic process" evidence=IEA]
[GO:0006563 "L-serine metabolic process" evidence=IEA] [GO:0030170
"pyridoxal phosphate binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0005739 "mitochondrion" evidence=IDA] UniPathway:UPA00193
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
GO:GO:0005739 GO:GO:0009792 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0006544 GO:GO:0035999 EMBL:FO080365 eggNOG:COG0112 KO:K00600
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 HOGENOM:HOG000239405
OMA:ERFRAIC GeneTree:ENSGT00390000002762 GO:GO:0009069 PIR:B88483
RefSeq:NP_741197.1 RefSeq:NP_741198.1 ProteinModelPortal:P50432
SMR:P50432 DIP:DIP-26240N IntAct:P50432 MINT:MINT-227953
STRING:P50432 PaxDb:P50432 PRIDE:P50432 EnsemblMetazoa:C05D11.11b.1
EnsemblMetazoa:C05D11.11b.2 EnsemblMetazoa:C05D11.11b.3
GeneID:175915 KEGG:cel:CELE_C05D11.11 UCSC:F44F4.6 CTD:175915
WormBase:C05D11.11a WormBase:C05D11.11b InParanoid:P50432
NextBio:890288 Uniprot:P50432
Length = 507
Score = 579 (208.9 bits), Expect = 5.2e-55, P = 5.2e-55
Identities = 115/248 (46%), Positives = 167/248 (67%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+++ K+DP++++I+ EK+RQ +ELIASEN+TS AVM+A G+ + NKY+EGYPG RYY
Sbjct: 50 DHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYY 109
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG +FID +E + R ++F + A NVQP SGS AN AV+ +++ IMG+ L
Sbjct: 110 GGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDL 169
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG ++ + ++F S+ Y ++ IDY K+E A +PK IIAG S
Sbjct: 170 PDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVS 229
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
Y++++D+ERF IA +Y M DMAH +GL+AAG P+P ++D +T+TTHKSLRGPR
Sbjct: 230 CYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPR 289
Query: 236 GGFILMKK 243
G I +K
Sbjct: 290 GALIFYRK 297
Score = 536 (193.7 bits), Expect = 2.1e-50, P = 2.1e-50
Identities = 117/270 (43%), Positives = 165/270 (61%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G T ++ + ++F S+ Y ++ IDY K+E A +PK IIAG S Y++++D+
Sbjct: 178 GFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDY 237
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
ERF IA +Y M DMAH +GL+AAG P+P ++D +T+TTHKSLRGPRG I +K
Sbjct: 238 ERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIFYRK 297
Query: 244 KYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289
+ INSAVFPG+QGGP H IA AVA ++ L DF Y +QV+
Sbjct: 298 GVRSTNAKGVDTLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVL 357
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349
KNAK L++ + + G + +GGT +H++LVDLR + G AE +L+ A+I CNKN+ P D
Sbjct: 358 KNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGD 417
Query: 350 PEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
GIRLG+ A+T+RGF E + KV
Sbjct: 418 VSA-LRPGGIRLGTPALTSRGFQEQDFEKV 446
>UNIPROTKB|P50432 [details] [associations]
symbol:mel-32 "Serine hydroxymethyltransferase"
species:6239 "Caenorhabditis elegans" [GO:0030170 "pyridoxal
phosphate binding" evidence=TAS] [GO:0009790 "embryo development"
evidence=IMP] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=TAS] [GO:0009069 "serine family amino acid
metabolic process" evidence=TAS] UniPathway:UPA00193
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
GO:GO:0005739 GO:GO:0009792 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0006544 GO:GO:0035999 EMBL:FO080365 eggNOG:COG0112 KO:K00600
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 HOGENOM:HOG000239405
OMA:ERFRAIC GeneTree:ENSGT00390000002762 GO:GO:0009069 PIR:B88483
RefSeq:NP_741197.1 RefSeq:NP_741198.1 ProteinModelPortal:P50432
SMR:P50432 DIP:DIP-26240N IntAct:P50432 MINT:MINT-227953
STRING:P50432 PaxDb:P50432 PRIDE:P50432 EnsemblMetazoa:C05D11.11b.1
EnsemblMetazoa:C05D11.11b.2 EnsemblMetazoa:C05D11.11b.3
GeneID:175915 KEGG:cel:CELE_C05D11.11 UCSC:F44F4.6 CTD:175915
WormBase:C05D11.11a WormBase:C05D11.11b InParanoid:P50432
NextBio:890288 Uniprot:P50432
Length = 507
Score = 579 (208.9 bits), Expect = 5.2e-55, P = 5.2e-55
Identities = 115/248 (46%), Positives = 167/248 (67%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+++ K+DP++++I+ EK+RQ +ELIASEN+TS AVM+A G+ + NKY+EGYPG RYY
Sbjct: 50 DHVEKVDPEVFDIMKNEKKRQRRGLELIASENFTSKAVMDALGSAMCNKYSEGYPGARYY 109
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG +FID +E + R ++F + A NVQP SGS AN AV+ +++ IMG+ L
Sbjct: 110 GGNEFIDQMELLCQKRALEVFGLDPAKWGVNVQPLSGSPANFAVYTAIVGSNGRIMGLDL 169
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG ++ + ++F S+ Y ++ IDY K+E A +PK IIAG S
Sbjct: 170 PDGGHLTHGFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVS 229
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
Y++++D+ERF IA +Y M DMAH +GL+AAG P+P ++D +T+TTHKSLRGPR
Sbjct: 230 CYARHLDYERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPR 289
Query: 236 GGFILMKK 243
G I +K
Sbjct: 290 GALIFYRK 297
Score = 536 (193.7 bits), Expect = 2.1e-50, P = 2.1e-50
Identities = 117/270 (43%), Positives = 165/270 (61%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G T ++ + ++F S+ Y ++ IDY K+E A +PK IIAG S Y++++D+
Sbjct: 178 GFFTPARKVSATSEFFQSLPYKVDPTTGLIDYDKLEQNAMLFRPKAIIAGVSCYARHLDY 237
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
ERF IA +Y M DMAH +GL+AAG P+P ++D +T+TTHKSLRGPRG I +K
Sbjct: 238 ERFRKIATKAGAYLMSDMAHISGLVAAGLIPSPFEYSDVVTTTTHKSLRGPRGALIFYRK 297
Query: 244 KYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289
+ INSAVFPG+QGGP H IA AVA ++ L DF Y +QV+
Sbjct: 298 GVRSTNAKGVDTLYDLEEKINSAVFPGLQGGPHNHTIAGIAVALRQCLSEDFVQYGEQVL 357
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349
KNAK L++ + + G + +GGT +H++LVDLR + G AE +L+ A+I CNKN+ P D
Sbjct: 358 KNAKTLAERMKKHGYALATGGTDNHLLLVDLRPIGVEGARAEHVLDLAHIACNKNTCPGD 417
Query: 350 PEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
GIRLG+ A+T+RGF E + KV
Sbjct: 418 VSA-LRPGGIRLGTPALTSRGFQEQDFEKV 446
>RGD|1308582 [details] [associations]
symbol:Shmt2 "serine hydroxymethyltransferase 2 (mitochondrial)"
species:10116 "Rattus norvegicus" [GO:0003682 "chromatin binding"
evidence=IEA;ISO] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=ISO;IDA;TAS] [GO:0005739 "mitochondrion"
evidence=ISO;IDA;TAS] [GO:0005743 "mitochondrial inner membrane"
evidence=ISO;IDA] [GO:0005758 "mitochondrial intermembrane space"
evidence=IDA] [GO:0005759 "mitochondrial matrix" evidence=ISO;IDA]
[GO:0006544 "glycine metabolic process" evidence=IDA;TAS]
[GO:0006545 "glycine biosynthetic process" evidence=IDA]
[GO:0006563 "L-serine metabolic process" evidence=TAS] [GO:0006564
"L-serine biosynthetic process" evidence=IDA] [GO:0006730
"one-carbon metabolic process" evidence=ISO] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IDA] [GO:0008732
"L-allo-threonine aldolase activity" evidence=IDA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA;ISO] [GO:0016597 "amino
acid binding" evidence=IPI] [GO:0019264 "glycine biosynthetic
process from serine" evidence=IDA] [GO:0030170 "pyridoxal phosphate
binding" evidence=IDA;TAS] [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] [GO:0042645 "mitochondrial nucleoid"
evidence=IEA;ISO] [GO:0042802 "identical protein binding"
evidence=IDA] [GO:0051289 "protein homotetramerization"
evidence=IDA] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 RGD:1308582
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0015630 GO:GO:0005743
GO:GO:0005758 GO:GO:0005759 GO:GO:0008284 GO:GO:0003682
GO:GO:0016597 GO:GO:0051289 GO:GO:0042802 GO:GO:0042645
GO:GO:0008168 GO:GO:0035999 GO:GO:0006564 GO:GO:0008732
eggNOG:COG0112 KO:K00600 GO:GO:0004372 PANTHER:PTHR11680
OMA:GKIDYED HOGENOM:HOG000239405 GO:GO:0019264
GeneTree:ENSGT00390000002762 HOVERGEN:HBG002807 CTD:6472
OrthoDB:EOG4G4GQ7 EMBL:BC085331 IPI:IPI00195109
RefSeq:NP_001008323.1 UniGene:Rn.9214 SMR:Q5U3Z7 IntAct:Q5U3Z7
STRING:Q5U3Z7 Ensembl:ENSRNOT00000011082 GeneID:299857
KEGG:rno:299857 InParanoid:Q5U3Z7 NextBio:645904
Genevestigator:Q5U3Z7 Uniprot:Q5U3Z7
Length = 504
Score = 577 (208.2 bits), Expect = 8.4e-55, P = 8.4e-55
Identities = 115/253 (45%), Positives = 166/253 (65%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP+IWE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 47 ESLSDSDPEIWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN A + ++L P D IMG+ L
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 166
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y LN + IDY ++ A+ +P+LIIAG S
Sbjct: 167 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFRPRLIIAGTS 226
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY++ ID+ R + + ++ + DMAH +GL+AA P+P +AD +T+TTHK+LRG R
Sbjct: 227 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKYADIVTTTTHKTLRGAR 286
Query: 236 GGFILMKKKYKKI 248
G I +K + +
Sbjct: 287 SGLIFYRKGVRTV 299
Score = 494 (179.0 bits), Expect = 6.4e-46, P = 6.4e-46
Identities = 108/272 (39%), Positives = 163/272 (59%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+++ ++ + +F S+ Y LN + IDY ++ A+ +P+LIIAG SAY++ ID+
Sbjct: 175 GYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFRPRLIIAGTSAYARLIDY 234
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R + + ++ + DMAH +GL+AA P+P +AD +T+TTHK+LRG R G I +K
Sbjct: 235 ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKYADIVTTTTHKTLRGARSGLIFYRK 294
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + IN AVFP +QGGP H IAA AVA K+ P F+ Y QV
Sbjct: 295 GVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQV 354
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
++NA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE +I NKN+ P
Sbjct: 355 LRNAQAMADALLKRGYSLVSGGTDTHLVLVDLRPKGLDGARAERVLELVSITANKNTCPG 414
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
D G+RLG+ A+T+R F E + +VV
Sbjct: 415 D-RSAITPGGLRLGAPALTSRQFREDDFRRVV 445
>UNIPROTKB|F1SL74 [details] [associations]
symbol:LOC100626911 "Serine hydroxymethyltransferase"
species:9823 "Sus scrofa" [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0030170
"pyridoxal phosphate binding" evidence=IEA] [GO:0006563 "L-serine
metabolic process" evidence=IEA] [GO:0006544 "glycine metabolic
process" evidence=IEA] UniPathway:UPA00193 HAMAP:MF_00051
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0006544 GO:GO:0035999
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 OMA:GKIDYED
GeneTree:ENSGT00390000002762 EMBL:CU633428 EMBL:FP340566
Ensembl:ENSSSCT00000023184 Ensembl:ENSSSCT00000023666
Uniprot:F1SL74
Length = 504
Score = 573 (206.8 bits), Expect = 2.3e-54, P = 2.3e-54
Identities = 115/253 (45%), Positives = 165/253 (65%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 47 ESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN A + ++L P D IMG+ L
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 166
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG S
Sbjct: 167 PDGGHLTHGYMTDVKRISATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTS 226
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R
Sbjct: 227 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFEHADVVTTTTHKTLRGAR 286
Query: 236 GGFILMKKKYKKI 248
G I +K + +
Sbjct: 287 SGLIFYRKGVRTV 299
Score = 501 (181.4 bits), Expect = 1.1e-46, P = 1.1e-46
Identities = 111/272 (40%), Positives = 161/272 (59%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G++T ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG SAY++ ID+
Sbjct: 175 GYMTDVKRISATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTSAYARLIDY 234
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R G I +K
Sbjct: 235 ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFEHADVVTTTTHKTLRGARSGLIFYRK 294
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + IN AVFP +QGGP H IAA AVA K+ P F+ Y QV
Sbjct: 295 GVRTVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQV 354
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G E +LE +I NKN+ P
Sbjct: 355 LKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARVERVLELVSITANKNTCPG 414
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
D G+RLG+ A+T+R F E + KVV
Sbjct: 415 D-RSAITPGGLRLGTPALTSRQFREDDFRKVV 445
>UNIPROTKB|Q3SZ20 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9913 "Bos taurus" [GO:0005743 "mitochondrial
inner membrane" evidence=ISS] [GO:0005759 "mitochondrial matrix"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
[GO:0003682 "chromatin binding" evidence=ISS] [GO:0035999
"tetrahydrofolate interconversion" evidence=IEA] [GO:0015630
"microtubule cytoskeleton" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0008168
"methyltransferase activity" evidence=IEA] [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0006563 "L-serine metabolic
process" evidence=IEA] [GO:0006544 "glycine metabolic process"
evidence=IEA] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 GO:GO:0015630 GO:GO:0005743 GO:GO:0003682
GO:GO:0042645 GO:GO:0008168 GO:GO:0006544 GO:GO:0035999
eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 OMA:GKIDYED HOGENOM:HOG000239405
GeneTree:ENSGT00390000002762 HOVERGEN:HBG002807 EMBL:BC103242
IPI:IPI00718654 RefSeq:NP_001029454.1 UniGene:Bt.49106
ProteinModelPortal:Q3SZ20 SMR:Q3SZ20 STRING:Q3SZ20 PRIDE:Q3SZ20
Ensembl:ENSBTAT00000038244 GeneID:507197 KEGG:bta:507197 CTD:6472
InParanoid:Q3SZ20 OrthoDB:EOG4G4GQ7 NextBio:20867950 Uniprot:Q3SZ20
Length = 504
Score = 572 (206.4 bits), Expect = 2.9e-54, P = 2.9e-54
Identities = 115/248 (46%), Positives = 163/248 (65%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 47 ESLSDSDPEMWELLRREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN A + ++L P D IMG+ L
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 166
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y LN + IDY ++ A+ KP+LIIAG S
Sbjct: 167 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTS 226
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R
Sbjct: 227 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGAR 286
Query: 236 GGFILMKK 243
G I +K
Sbjct: 287 SGLIFYRK 294
Score = 506 (183.2 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 111/272 (40%), Positives = 163/272 (59%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+++ ++ + +F S+ Y LN + IDY ++ A+ KP+LIIAG SAY++ ID+
Sbjct: 175 GYMSDVKRISATSIFFESMPYKLNPQTGLIDYDQLALTARLFKPRLIIAGTSAYARLIDY 234
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R G I +K
Sbjct: 235 ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRK 294
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + IN AVFP +QGGP H IAA AVA K+ P F+ Y Q+
Sbjct: 295 GVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQI 354
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE +I NKN+ P
Sbjct: 355 LKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPG 414
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
D G+RLG+ A+T+RGF E + KVV
Sbjct: 415 D-RSAITPGGLRLGAPALTSRGFLEDDFRKVV 445
>UNIPROTKB|E2R4L7 [details] [associations]
symbol:SHMT2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0035999 "tetrahydrofolate interconversion"
evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0006563 "L-serine metabolic process"
evidence=IEA] [GO:0006544 "glycine metabolic process" evidence=IEA]
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=IEA] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 GO:GO:0006544 GO:GO:0035999 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 OMA:GKIDYED
GeneTree:ENSGT00390000002762 EMBL:AAEX03006944 EMBL:AAEX03006943
Ensembl:ENSCAFT00000000313 NextBio:20893182 Uniprot:E2R4L7
Length = 531
Score = 572 (206.4 bits), Expect = 2.9e-54, P = 2.9e-54
Identities = 115/253 (45%), Positives = 165/253 (65%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 92 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 151
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN A + ++L P D IMG+ L
Sbjct: 152 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 211
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG S
Sbjct: 212 PDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTS 271
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R
Sbjct: 272 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGAR 331
Query: 236 GGFILMKKKYKKI 248
G I +K + +
Sbjct: 332 SGLIFYRKGMRAV 344
Score = 498 (180.4 bits), Expect = 2.4e-46, P = 2.4e-46
Identities = 110/272 (40%), Positives = 162/272 (59%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+++ ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG SAY++ ID+
Sbjct: 220 GYMSDVKRVSATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLIIAGTSAYARLIDY 279
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R G I +K
Sbjct: 280 ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRK 339
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + IN AVFP +QGGP H IAA AVA K+ P F+ Y QV
Sbjct: 340 GMRAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPTFREYALQV 399
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE +I NKN+ P
Sbjct: 400 LKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPG 459
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
D G+RLG+ A+T+R F E + +VV
Sbjct: 460 D-RSAITPGGLRLGAPALTSRQFREDDFRRVV 490
>TAIR|locus:2129251 [details] [associations]
symbol:SHM4 "serine hydroxymethyltransferase 4"
species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006544 "glycine metabolic process"
evidence=IEA;ISS] [GO:0006563 "L-serine metabolic process"
evidence=IEA;ISS] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=ISS;IDA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0016020 "membrane"
evidence=IDA] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0005829 GO:GO:0005886
GO:GO:0009506 GO:GO:0046686 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:Z97335 GO:GO:0008168
GO:GO:0006544 GO:GO:0035999 EMBL:AL161537 eggNOG:COG0112 KO:K00600
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 HOGENOM:HOG000239405
OMA:LKEVASP HSSP:P07511 ProtClustDB:PLN03226 EMBL:AF361589
EMBL:AY093987 IPI:IPI00532971 PIR:B71400 RefSeq:NP_193129.1
UniGene:At.23373 ProteinModelPortal:O23254 SMR:O23254 STRING:O23254
PaxDb:O23254 PRIDE:O23254 ProMEX:O23254 EnsemblPlants:AT4G13930.1
GeneID:827027 KEGG:ath:AT4G13930 TAIR:At4g13930 InParanoid:O23254
PhylomeDB:O23254 Genevestigator:O23254 Uniprot:O23254
Length = 471
Score = 569 (205.4 bits), Expect = 6.1e-54, P = 6.1e-54
Identities = 122/250 (48%), Positives = 161/250 (64%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N +L +DP+I ++I KEK+RQ IELIASEN+TS AV+EA G+ LTNKY+EG PG RY
Sbjct: 9 NTSLVSVDPEIHDLIEKEKRRQCRGIELIASENFTSFAVIEALGSALTNKYSEGIPGNRY 68
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG +FID IE + +R + F+ + A NVQP+SGS AN A + ++L P D IMG+
Sbjct: 69 YGGNEFIDEIENLCRSRALEAFHCDPAAWGVNVQPYSGSPANFAAYTALLQPHDRIMGLD 128
Query: 121 LQEGGHLTHGMMLNMSGK------WFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAG 173
L GGHLTHG + K +F S+ Y +N IDY K+E A +PKL+I G
Sbjct: 129 LPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPKLLICG 188
Query: 174 ASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233
SAY + D+ RF IA + + + DMAH +GL+AA E NP + D +T+TTHKSLRG
Sbjct: 189 GSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHKSLRG 248
Query: 234 PRGGFILMKK 243
PR G I +K
Sbjct: 249 PRAGMIFYRK 258
Score = 466 (169.1 bits), Expect = 6.3e-43, P = 6.3e-43
Identities = 118/320 (36%), Positives = 170/320 (53%)
Query: 114 DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIA 172
D G L G + + G ++ + +F S+ Y +N IDY K+E A +PKL+I
Sbjct: 128 DLPSGGHLTHGYYTSGGKKISATSIYFESLPYKVNFTTGYIDYDKLEEKALDFRPKLLIC 187
Query: 173 GASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLR 232
G SAY + D+ RF IA + + + DMAH +GL+AA E NP + D +T+TTHKSLR
Sbjct: 188 GGSAYPRDWDYARFRAIADKVGALLLCDMAHISGLVAAQEAANPFEYCDVVTTTTHKSLR 247
Query: 233 GPRGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVL 277
GPR G I +K ++ IN AVFP +QGGP H I A AVA K+
Sbjct: 248 GPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALAVALKQAN 307
Query: 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337
P FK+Y KQV NA L L +G +IV+ GT++H++L DLR +TG E + +
Sbjct: 308 TPGFKVYAKQVKANAVALGNYLMSKGYQIVTNGTENHLVLWDLRPLGLTGNKVEKLCDLC 367
Query: 338 NIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSE--LEIIKVVLARKYRPS-NFNTLI 394
+I NKN++ D G+R+G+ A+T+RG E E I L+R + +
Sbjct: 368 SITLNKNAVFGD-SSALAPGGVRIGAPAMTSRGLVEKDFEQIGEFLSRAVTLTLDIQKTY 426
Query: 395 GQ--NHISKSLINALDKKRL 412
G+ +K L+N D +L
Sbjct: 427 GKLLKDFNKGLVNNKDLDQL 446
>CGD|CAL0003822 [details] [associations]
symbol:SHM1 species:5476 "Candida albicans" [GO:0004372
"glycine hydroxymethyltransferase activity" evidence=ISS]
[GO:0006544 "glycine metabolic process" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006730 "one-carbon metabolic
process" evidence=ISS] [GO:0009070 "serine family amino acid
biosynthetic process" evidence=IEA] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 CGD:CAL0003822 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0006730 GO:GO:0006544
GO:GO:0035999 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
EMBL:AACQ01000187 RefSeq:XP_711682.1 RefSeq:XP_888942.1
ProteinModelPortal:Q59PP7 SMR:Q59PP7 STRING:Q59PP7 GeneID:3646724
GeneID:3703901 KEGG:cal:CaO19.1342 KEGG:cal:CaO19_1342
Uniprot:Q59PP7
Length = 493
Score = 565 (203.9 bits), Expect = 1.6e-53, P = 1.6e-53
Identities = 119/270 (44%), Positives = 174/270 (64%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+ T+ ++ K+F ++ Y LN++ I DY +E A+ +PK+I+AGASAYS+ ID+
Sbjct: 165 GYQTNTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVAGASAYSRVIDY 224
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+R IA + +Y + DMAH +GL++AG +P P++D +T+TTHKSLRGPRG I +K
Sbjct: 225 KRMRQIADKVGAYLLSDMAHISGLVSAGVTDSPFPYSDIVTTTTHKSLRGPRGAMIFFRK 284
Query: 244 KYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289
+K+ IN +VFPG QGGP H I+A AVA K+ +P++ YQ++VV
Sbjct: 285 GIRKVTKKGKEIPYELERKINFSVFPGHQGGPHNHTISALAVALKQCTEPEYVKYQQEVV 344
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349
NAK + L +G ++VS GT +H+ILVDLR++ I G E++LE ANI NKN++P D
Sbjct: 345 SNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIATNKNTVPGD 404
Query: 350 PEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
F SG+R+G+ A+TTRGF E KV
Sbjct: 405 VSA-LFPSGLRVGTPAMTTRGFGPEEFDKV 433
Score = 558 (201.5 bits), Expect = 9.1e-53, P = 9.1e-53
Identities = 111/254 (43%), Positives = 168/254 (66%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
++++ +DP++ +I+ +E+ RQ N+I LI SEN+TS AVM+ G+ + NKY+EGYPG+RY
Sbjct: 36 SKSVQDVDPEMADILNQERTRQKNSITLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERY 95
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + ID E + R + F + + NVQP SG+ AN + ++L GD IMG+
Sbjct: 96 YGGNEIIDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIMGLD 155
Query: 121 LQEGGHLTHGMMLNMS-----GKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGA 174
L GGHL+HG N + K+F ++ Y LN++ I DY +E A+ +PK+I+AGA
Sbjct: 156 LPHGGHLSHGYQTNTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVAGA 215
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
SAYS+ ID++R IA + +Y + DMAH +GL++AG +P P++D +T+TTHKSLRGP
Sbjct: 216 SAYSRVIDYKRMRQIADKVGAYLLSDMAHISGLVSAGVTDSPFPYSDIVTTTTHKSLRGP 275
Query: 235 RGGFILMKKKYKKI 248
RG I +K +K+
Sbjct: 276 RGAMIFFRKGIRKV 289
>UNIPROTKB|Q59PP7 [details] [associations]
symbol:SHM1 "Putative uncharacterized protein SHM1"
species:237561 "Candida albicans SC5314" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006544 "glycine metabolic
process" evidence=ISS] [GO:0006730 "one-carbon metabolic process"
evidence=ISS] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 CGD:CAL0003822
GO:GO:0005739 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0006730 GO:GO:0006544
GO:GO:0035999 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
EMBL:AACQ01000187 RefSeq:XP_711682.1 RefSeq:XP_888942.1
ProteinModelPortal:Q59PP7 SMR:Q59PP7 STRING:Q59PP7 GeneID:3646724
GeneID:3703901 KEGG:cal:CaO19.1342 KEGG:cal:CaO19_1342
Uniprot:Q59PP7
Length = 493
Score = 565 (203.9 bits), Expect = 1.6e-53, P = 1.6e-53
Identities = 119/270 (44%), Positives = 174/270 (64%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+ T+ ++ K+F ++ Y LN++ I DY +E A+ +PK+I+AGASAYS+ ID+
Sbjct: 165 GYQTNTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVAGASAYSRVIDY 224
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+R IA + +Y + DMAH +GL++AG +P P++D +T+TTHKSLRGPRG I +K
Sbjct: 225 KRMRQIADKVGAYLLSDMAHISGLVSAGVTDSPFPYSDIVTTTTHKSLRGPRGAMIFFRK 284
Query: 244 KYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289
+K+ IN +VFPG QGGP H I+A AVA K+ +P++ YQ++VV
Sbjct: 285 GIRKVTKKGKEIPYELERKINFSVFPGHQGGPHNHTISALAVALKQCTEPEYVKYQQEVV 344
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349
NAK + L +G ++VS GT +H+ILVDLR++ I G E++LE ANI NKN++P D
Sbjct: 345 SNAKHFADALVSKGFKLVSDGTDTHLILVDLRSRNIDGARVEAVLERANIATNKNTVPGD 404
Query: 350 PEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
F SG+R+G+ A+TTRGF E KV
Sbjct: 405 VSA-LFPSGLRVGTPAMTTRGFGPEEFDKV 433
Score = 558 (201.5 bits), Expect = 9.1e-53, P = 9.1e-53
Identities = 111/254 (43%), Positives = 168/254 (66%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
++++ +DP++ +I+ +E+ RQ N+I LI SEN+TS AVM+ G+ + NKY+EGYPG+RY
Sbjct: 36 SKSVQDVDPEMADILNQERTRQKNSITLIPSENFTSKAVMDLLGSEMQNKYSEGYPGERY 95
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + ID E + R + F + + NVQP SG+ AN + ++L GD IMG+
Sbjct: 96 YGGNEIIDKAEALCQKRALEAFGLDPSQWGVNVQPLSGAPANLYAYSAILEVGDRIMGLD 155
Query: 121 LQEGGHLTHGMMLNMS-----GKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGA 174
L GGHL+HG N + K+F ++ Y LN++ I DY +E A+ +PK+I+AGA
Sbjct: 156 LPHGGHLSHGYQTNTTKISYISKYFQTMPYRLNEETGIIDYDTLEKNAQLFRPKVIVAGA 215
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
SAYS+ ID++R IA + +Y + DMAH +GL++AG +P P++D +T+TTHKSLRGP
Sbjct: 216 SAYSRVIDYKRMRQIADKVGAYLLSDMAHISGLVSAGVTDSPFPYSDIVTTTTHKSLRGP 275
Query: 235 RGGFILMKKKYKKI 248
RG I +K +K+
Sbjct: 276 RGAMIFFRKGIRKV 289
>UNIPROTKB|P14519 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9986 "Oryctolagus cuniculus" [GO:0003682
"chromatin binding" evidence=ISS] [GO:0005743 "mitochondrial inner
membrane" evidence=ISS] [GO:0005759 "mitochondrial matrix"
evidence=ISS] [GO:0042645 "mitochondrial nucleoid" evidence=ISS]
UniPathway:UPA00193 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0005743 GO:GO:0003682 GO:GO:0042645 GO:GO:0006544
GO:GO:0035999 eggNOG:COG0112 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 HOGENOM:HOG000239405 HOVERGEN:HBG002807 CTD:6472
EMBL:X91902 RefSeq:NP_001075874.1 UniGene:Ocu.3292
ProteinModelPortal:P14519 SMR:P14519 STRING:P14519 PRIDE:P14519
GeneID:100009293 Uniprot:P14519
Length = 504
Score = 565 (203.9 bits), Expect = 1.6e-53, P = 1.6e-53
Identities = 113/253 (44%), Positives = 165/253 (65%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ A +EA G+ L NKY+EGYPGKRYY
Sbjct: 47 ESLSDTDPEMWELLQREKDRQCRGLELIASENFCIRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN A + ++L P D IMG+ L
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAAYTALLQPHDRIMGLDL 166
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y LN + IDY+++ A+ +P+LIIAG S
Sbjct: 167 PDGGHLTHGYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTS 226
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R
Sbjct: 227 AYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGAR 286
Query: 236 GGFILMKKKYKKI 248
G I +K + +
Sbjct: 287 SGLIFYRKGVRTV 299
Score = 495 (179.3 bits), Expect = 5.0e-46, P = 5.0e-46
Identities = 109/272 (40%), Positives = 163/272 (59%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+++ ++ + +F S+ Y LN + IDY+++ A+ +P+LIIAG SAY++ ID+
Sbjct: 175 GYMSDVKRVSATSIFFESMPYKLNPQTGLIDYEQLALTARLFRPRLIIAGTSAYARLIDY 234
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG R G I +K
Sbjct: 235 ARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRK 294
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + IN AVFP +QGGP H IAA AVA K+ P F+ Y QV
Sbjct: 295 GVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQV 354
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE +I NKN+ P
Sbjct: 355 LKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPG 414
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
D G+RLG+ A+T+R F E + +VV
Sbjct: 415 D-RSAITPGGLRLGAPALTSRQFREDDFRRVV 445
>ZFIN|ZDB-GENE-040426-1558 [details] [associations]
symbol:shmt1 "serine hydroxymethyltransferase 1
(soluble)" species:7955 "Danio rerio" [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0006544 "glycine metabolic process" evidence=IEA]
[GO:0006563 "L-serine metabolic process" evidence=IEA] [GO:0004372
"glycine hydroxymethyltransferase activity" evidence=IEA;ISS;IDA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0006730
"one-carbon metabolic process" evidence=IEA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0008168 "methyltransferase
activity" evidence=IEA] [GO:0032259 "methylation" evidence=IEA]
UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
ZFIN:ZDB-GENE-040426-1558 GO:GO:0005829 GO:GO:0005634 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 GO:GO:0006544 GO:GO:0035999 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 GeneTree:ENSGT00390000002762
EMBL:BX649440 IPI:IPI00994921 Ensembl:ENSDART00000124883
Bgee:F1QY03 Uniprot:F1QY03
Length = 504
Score = 562 (202.9 bits), Expect = 3.4e-53, P = 3.4e-53
Identities = 112/249 (44%), Positives = 165/249 (66%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E LS DP++++II KEK+RQ +ELIASEN+TS AV+EA G+ + NKY+EGYPG+RYY
Sbjct: 46 EPLSTNDPEVFDIIKKEKKRQTYGLELIASENFTSRAVLEALGSCMNNKYSEGYPGQRYY 105
Query: 66 GGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D +E++ +R K++ + NVQP+SGS AN AV+ +++ P IMG+ L
Sbjct: 106 GGTEHVDELERLCQDRALKVYGLDPEKWGVNVQPYSGSPANFAVYTAIVEPHGRIMGLDL 165
Query: 122 QEGGHLTHGMMLNMSG-KWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQ 179
+GGHLTHG M + +S+ Y +N + IDY ++E A+ P+LIIAG S YS+
Sbjct: 166 PDGGHLTHGFMTDKKKISATSSMPYKVNPETGYIDYNRLEENARLFHPRLIIAGTSCYSR 225
Query: 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFI 239
+D+ R IA +Y + DMAH +GL+AAG P+P + D +++TTHK+LRG R G I
Sbjct: 226 NLDYSRLRKIADENGAYLLADMAHISGLVAAGVVPSPFEYCDVVSTTTHKTLRGCRAGVI 285
Query: 240 LMKKKYKKI 248
+K + +
Sbjct: 286 FFRKGVRSV 294
Score = 498 (180.4 bits), Expect = 2.4e-46, P = 2.4e-46
Identities = 111/257 (43%), Positives = 155/257 (60%)
Query: 141 NSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMV 199
+S+ Y +N + IDY ++E A+ P+LIIAG S YS+ +D+ R IA +Y +
Sbjct: 186 SSMPYKVNPETGYIDYNRLEENARLFHPRLIIAGTSCYSRNLDYSRLRKIADENGAYLLA 245
Query: 200 DMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKI----------- 248
DMAH +GL+AAG P+P + D +++TTHK+LRG R G I +K + +
Sbjct: 246 DMAHISGLVAAGVVPSPFEYCDVVSTTTHKTLRGCRAGVIFFRKGVRSVDAKTGKETMYN 305
Query: 249 ----INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
IN AVFPG+QGGP H IA AVA K+ L P+FK YQ QV+ N K L+ L +G
Sbjct: 306 LESLINQAVFPGLQGGPHNHAIAGVAVALKQALTPEFKTYQLQVLANCKALASALMDKGY 365
Query: 305 RIVS--GGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362
++V+ GG+ +H+ILVDLR+ G AE +LE+ I CNKN+ P D + SG+RLG
Sbjct: 366 KVVTDKGGSDNHLILVDLRSNGTDGGRAEKVLEACAIACNKNTCPGD-KSALRPSGLRLG 424
Query: 363 SSAITTRGFSELEIIKV 379
S A+T+RG E KV
Sbjct: 425 SPALTSRGLLEEHFHKV 441
>UNIPROTKB|E1BS67 [details] [associations]
symbol:SHMT1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=IEA] [GO:0006544 "glycine metabolic process" evidence=IEA]
[GO:0030170 "pyridoxal phosphate binding" evidence=IEA] [GO:0035999
"tetrahydrofolate interconversion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0006565 "L-serine catabolic process" evidence=IEA] [GO:0009113
"purine nucleobase biosynthetic process" evidence=IEA] [GO:0042803
"protein homodimerization activity" evidence=IEA] [GO:0046655
"folic acid metabolic process" evidence=IEA] [GO:0051262 "protein
tetramerization" evidence=IEA] UniPathway:UPA00193 HAMAP:MF_00051
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
GO:GO:0005739 GO:GO:0005634 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0051262 GO:GO:0009113 GO:GO:0006544 GO:GO:0035999
GO:GO:0046655 GO:GO:0006565 GO:GO:0004372 PANTHER:PTHR11680
GeneTree:ENSGT00390000002762 OMA:VDLRESH EMBL:AADN02023704
IPI:IPI00573440 Ensembl:ENSGALT00000008093 Uniprot:E1BS67
Length = 486
Score = 562 (202.9 bits), Expect = 3.4e-53, P = 3.4e-53
Identities = 118/249 (47%), Positives = 162/249 (65%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E L DP+++ II KEKQRQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RYY
Sbjct: 26 EPLDSNDPEVYNIIKKEKQRQRLGLELIASENFASCAVLEALGSCLNNKYSEGYPGQRYY 85
Query: 66 GGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG +F+D +E++ R + F + NVQP+SGS AN AV+ +++ P IMG+ L
Sbjct: 86 GGTEFVDELERLCQKRALQAFRLDPQKWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 145
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIA-GA 174
+GGHLTHG M ++ + +F S+ Y +N K IDY K+E A+ PKLIIA G
Sbjct: 146 PDGGHLTHGFMTDKKKISATSVFFESMPYKVNPKTGYIDYDKLEENARLFHPKLIIAAGV 205
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
S YS+ +D+ R IA ++Y M DMAH +GL+AAG P+P D +++TTHK+LRG
Sbjct: 206 SCYSRNLDYARMRQIANANSAYLMADMAHISGLVAAGVVPSPFEHCDVVSTTTHKTLRGC 265
Query: 235 RGGFILMKK 243
R G I +K
Sbjct: 266 RAGMIFYRK 274
Score = 489 (177.2 bits), Expect = 2.2e-45, P = 2.2e-45
Identities = 107/237 (45%), Positives = 146/237 (61%)
Query: 153 IDYKKVEYLAKKNKPKLIIA-GASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAG 211
IDY K+E A+ PKLIIA G S YS+ +D+ R IA ++Y M DMAH +GL+AAG
Sbjct: 183 IDYDKLEENARLFHPKLIIAAGVSCYSRNLDYARMRQIANANSAYLMADMAHISGLVAAG 242
Query: 212 EYPNPVPFADFITSTTHKSLRGPRGGFILMKK---------------KYKKIINSAVFPG 256
P+P D +++TTHK+LRG R G I +K + +IN AVFPG
Sbjct: 243 VVPSPFEHCDVVSTTTHKTLRGCRAGMIFYRKGTRSTDPKTGKETLYNLESLINQAVFPG 302
Query: 257 IQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHII 316
+QGGP H IA AVA ++ + P+FK YQ+QVV N K L+ L + G IV+GG+ +H+I
Sbjct: 303 LQGGPHNHAIAGIAVALQQAMTPEFKAYQQQVVANCKTLAAALMEMGYDIVTGGSDNHLI 362
Query: 317 LVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSE 373
L+DLRN+ G AE +LE +I CNKN+ P D SG+R G+ A+T+RGF +
Sbjct: 363 LLDLRNRGTDGGRAERVLELCSIACNKNTCPGDVSA-LRPSGLRFGTPALTSRGFRQ 418
>UNIPROTKB|Q0C591 [details] [associations]
symbol:dnaX "DNA polymerase III, subunits gamma and tau"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006260 "DNA
replication" evidence=ISS] [GO:0009360 "DNA polymerase III complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:CP000158 GenomeReviews:CP000158_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 RefSeq:YP_759102.1 STRING:Q0C591 GeneID:4289739
KEGG:hne:HNE_0372 PATRIC:32213536 OMA:TCARIVS ProtClustDB:PRK09111
BioCyc:HNEP228405:GI69-416-MONOMER InterPro:IPR022107 Pfam:PF12362
Uniprot:Q0C591
Length = 578
Score = 561 (202.5 bits), Expect = 4.4e-53, P = 4.4e-53
Identities = 133/373 (35%), Positives = 203/373 (54%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARKYRP F LIGQ + ++L NA + R+ H ++ TG RGVGKTT +R+LA+ LN
Sbjct: 31 VLARKYRPRRFEDLIGQEAMVRTLSNAFETGRIAHGFMLTGVRGVGKTTTARLLARGLNY 90
Query: 440 ---IGIDGNGGITSQPCGKCSV----CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI 492
G G + P C I D +E+DAAS G+ +M LL+
Sbjct: 91 EPKADAKGKKGKAAGPSIHLDPPGEHCDAIMASRHPDVLELDAASRTGVADMRDLLDSAR 150
Query: 493 YAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ 552
Y P++ARYK+Y+IDEVHML++ +FNA+LKTLEEPP ++KFI ATTE +K+P+TVLSRC +
Sbjct: 151 YGPVSARYKVYIIDEVHMLSNASFNALLKTLEEPPPHLKFIFATTEIRKVPVTVLSRCQR 210
Query: 553 FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS--E 610
F+LK++ ++ +L + E AL LIA A+GS+RD LSL DQ I ++ E
Sbjct: 211 FDLKRLDSGELSRHLGNVAQSEGANVSEEALALIARAAEGSVRDGLSLLDQGIVQTTDGE 270
Query: 611 KITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXX 670
+++ +++ ML + D+ L+ ++ D L+ + +++LKD
Sbjct: 271 EVSGAAVRAMLGLGDRARLLDAVEKAVGGDAKGALAEVREQVAGGADPAVILKDILDIAA 330
Query: 671 XXXXXXXXPEILIKDSPN--YNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGF 728
+ + P N L+++ Q +Q+ + G +L++APD
Sbjct: 331 DISVAQATGDDWTQAGPADWANRTRALAQRLTPAQAARNWQLLLSGYGDLQVAPDPATAL 390
Query: 729 TMTLLRMLVFQTL 741
M +LR+ TL
Sbjct: 391 NMVILRLAAASTL 403
>POMBASE|SPAC24C9.12c [details] [associations]
symbol:SPAC24C9.12c "glycine hydroxymethyltransferase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0004372
"glycine hydroxymethyltransferase activity" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0006544 "glycine
metabolic process" evidence=ISS] [GO:0006563 "L-serine metabolic
process" evidence=ISS] [GO:0006730 "one-carbon metabolic process"
evidence=ISS] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 PomBase:SPAC24C9.12c
GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CU329670 GO:GO:0006730
GO:GO:0006544 GO:GO:0035999 eggNOG:COG0112 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 HOGENOM:HOG000239405
OrthoDB:EOG444PTT PIR:T38353 RefSeq:NP_594037.1
ProteinModelPortal:O13972 SMR:O13972 STRING:O13972 PRIDE:O13972
EnsemblFungi:SPAC24C9.12c.1 GeneID:2542651 KEGG:spo:SPAC24C9.12c
OMA:HMVLVDV NextBio:20803700 Uniprot:O13972
Length = 467
Score = 559 (201.8 bits), Expect = 7.1e-53, P = 7.1e-53
Identities = 115/271 (42%), Positives = 174/271 (64%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+ T ++ +F S+ Y ++ IDY +E+ A+ +PK+++AG SAY + ID+
Sbjct: 138 GYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAYCRLIDY 197
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA ++N+Y +VDMAH +GL++AG P+P +AD +T+TTHKSLRGPRG I ++
Sbjct: 198 ARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRR 257
Query: 244 KYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289
+K IN +VFPG QGGP H I A AVA K+ +P +K YQ QVV
Sbjct: 258 GLRKHDKKGNPIYYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVV 317
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349
KNAK+ + +RG ++ + GT SH++LVD+++K + G AE +LE NI+ NKN++P+D
Sbjct: 318 KNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSD 377
Query: 350 PEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
+ + SGIR+G+ A+TTRGF E + ++VV
Sbjct: 378 -KSAFSPSGIRVGTPAMTTRGFKEQDFVRVV 407
Score = 550 (198.7 bits), Expect = 6.5e-52, P = 6.5e-52
Identities = 112/250 (44%), Positives = 163/250 (65%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + DP + EI+ E RQ +++ LIASEN+TS AVM+A G++++NKY+EGYPG RYYGG
Sbjct: 12 LKEQDPTVAEIMRHEADRQRSSVVLIASENFTSRAVMDALGSVMSNKYSEGYPGARYYGG 71
Query: 68 CKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
KFID IE + R FN + A NVQ SGS AN V+ +++ P +MG+ L
Sbjct: 72 NKFIDQIETLCQERALAAFNLDPAKWGVNVQCLSGSPANMQVYQAIMPPHGRLMGLDLPS 131
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAY 177
GGHL+HG ++ +F S+ Y ++ IDY +E+ A+ +PK+++AG SAY
Sbjct: 132 GGHLSHGYQTDTKKISAVSTYFESMPYRVDPNTGLIDYDMLEHDAQLFRPKILVAGTSAY 191
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
+ ID+ R IA ++N+Y +VDMAH +GL++AG P+P +AD +T+TTHKSLRGPRG
Sbjct: 192 CRLIDYARMRQIADSVNAYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGA 251
Query: 238 FILMKKKYKK 247
I ++ +K
Sbjct: 252 MIFFRRGLRK 261
>TAIR|locus:2119545 [details] [associations]
symbol:EDA36 "EMBRYO SAC DEVELOPMENT ARREST 37"
species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006544 "glycine metabolic process"
evidence=IEA;ISS] [GO:0006563 "L-serine metabolic process"
evidence=IEA;ISS] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0010197 "polar nucleus fusion" evidence=IMP]
[GO:0009555 "pollen development" evidence=IMP] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0009555 GO:GO:0008168
GO:GO:0006544 GO:GO:0010197 GO:GO:0035999 EMBL:AL035528
EMBL:AL161537 eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 HOGENOM:HOG000239405 HSSP:P07511
ProtClustDB:PLN03226 IPI:IPI00536506 PIR:T05258 RefSeq:NP_193125.1
UniGene:At.33326 ProteinModelPortal:Q9SVM4 SMR:Q9SVM4 STRING:Q9SVM4
EnsemblPlants:AT4G13890.1 GeneID:827024 KEGG:ath:AT4G13890
TAIR:At4g13890 InParanoid:Q9SVM4 OMA:MAHNSAL PhylomeDB:Q9SVM4
ArrayExpress:Q9SVM4 Genevestigator:Q9SVM4 Uniprot:Q9SVM4
Length = 470
Score = 555 (200.4 bits), Expect = 1.9e-52, P = 1.9e-52
Identities = 117/250 (46%), Positives = 163/250 (65%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N +L +DP+I+++I KEK RQ IELIA+EN+TS+AVMEA G+ LTNKY+EG PG RY
Sbjct: 9 NTHLDFVDPEIYDLIEKEKHRQCRGIELIAAENFTSVAVMEALGSCLTNKYSEGMPGNRY 68
Query: 65 YGGCKFIDLIEKIAINRLKKIF--NAE--AANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG +FID IE + +R + F N E NVQP+SGS AN A + ++L P D IMG+
Sbjct: 69 YGGTEFIDEIESLCRSRSLEAFHCNPEKWGVNVQPYSGSPANFAAYTALLQPHDRIMGLD 128
Query: 121 LQEGGHLTHGMML----NMSGK--WFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAG 173
L GGH+THG N+S +F ++ Y ++ K IDY K+E A +PKLII G
Sbjct: 129 LPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIICG 188
Query: 174 ASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233
++Y + D+ RF +A + ++ + DMAH + L+AA E +P + D +T++THKSLRG
Sbjct: 189 GTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLRG 248
Query: 234 PRGGFILMKK 243
PR G I +K
Sbjct: 249 PRAGMIFYRK 258
Score = 443 (161.0 bits), Expect = 1.8e-40, P = 1.8e-40
Identities = 103/282 (36%), Positives = 156/282 (55%)
Query: 114 DTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIA 172
D G + G + + G ++ + +F ++ Y ++ K IDY K+E A +PKLII
Sbjct: 128 DLPSGGHITHGYYSSGGKNISATSIYFENLPYKVDSKTGYIDYDKLEEKAMDFRPKLIIC 187
Query: 173 GASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLR 232
G ++Y + D+ RF +A + ++ + DMAH + L+AA E +P + D +T++THKSLR
Sbjct: 188 GGTSYPREWDYARFRAVADKVGAFLLCDMAHNSALVAAQEAADPFEYCDVVTTSTHKSLR 247
Query: 233 GPRGGFILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVL 277
GPR G I +K K INSAVFP +Q GP + I A AVA K+V+
Sbjct: 248 GPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVM 307
Query: 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337
P FK+Y KQV NA L+ L +G +V+ GT +H+IL DLR +TG E + E
Sbjct: 308 APSFKVYAKQVKANAACLASYLINKGYTLVTDGTDNHLILWDLRPLGLTGNKVEKVCELC 367
Query: 338 NIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
I N+N++ D G+R+G+ A+T+RG E + K+
Sbjct: 368 YITLNRNAVFGDTSF-LAPGGVRIGTPAMTSRGLVEKDFEKI 408
>SGD|S000004048 [details] [associations]
symbol:SHM2 "Cytosolic serine hydroxymethyltransferase"
species:4932 "Saccharomyces cerevisiae" [GO:0005737 "cytoplasm"
evidence=IEA;IMP;IDA] [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] [GO:0006730 "one-carbon metabolic
process" evidence=IEA;IGI;IMP] [GO:0030170 "pyridoxal phosphate
binding" evidence=IEA] [GO:0006563 "L-serine metabolic process"
evidence=IEA] [GO:0006544 "glycine metabolic process" evidence=IEA]
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=IEA;IMP] [GO:0003824 "catalytic activity" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0016740
"transferase activity" evidence=IEA] [GO:0043332 "mating projection
tip" evidence=IDA] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 SGD:S000004048
GO:GO:0005886 GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0043332 EMBL:BK006945 GO:GO:0006730 GO:GO:0006544
GO:GO:0035999 EMBL:X94607 eggNOG:COG0112 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 HOGENOM:HOG000239405
GeneTree:ENSGT00390000002762 EMBL:L22529 EMBL:Z73230 PIR:S61632
RefSeq:NP_013159.1 ProteinModelPortal:P37291 SMR:P37291
DIP:DIP-2602N IntAct:P37291 MINT:MINT-423439 STRING:P37291
PaxDb:P37291 PeptideAtlas:P37291 PRIDE:P37291 EnsemblFungi:YLR058C
GeneID:850747 KEGG:sce:YLR058C CYGD:YLR058c OMA:FRRGVRS
OrthoDB:EOG444PTT BioCyc:MetaCyc:YLR058C-MONOMER NextBio:966873
Genevestigator:P37291 GermOnline:YLR058C Uniprot:P37291
Length = 469
Score = 538 (194.4 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 119/272 (43%), Positives = 158/272 (58%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+ T ++ +F S Y +N + I DY +E A +PK+++AG SAY + ID+
Sbjct: 143 GYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLVAGTSAYCRLIDY 202
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+R IA +Y MVDMAH +GLIAAG P+P +AD +T+TTHKSLRGPRG I ++
Sbjct: 203 KRMREIADKCGAYLMVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRR 262
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ I IN +VFPG QGGP H IAA A A K+ P+FK YQ QV
Sbjct: 263 GVRSINPKTGKEVLYDLENPINFSVFPGHQGGPHNHTIAALATALKQAATPEFKEYQTQV 322
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+KNAK L G R+VS GT SH++LV LR K + G E I E NI NKNSIP
Sbjct: 323 LKNAKALESEFKNLGYRLVSNGTDSHMVLVSLREKGVDGARVEYICEKINIALNKNSIPG 382
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
D + G+R+G+ A+TTRG E + ++V
Sbjct: 383 D-KSALVPGGVRIGAPAMTTRGMGEEDFHRIV 413
Score = 529 (191.3 bits), Expect = 1.2e-49, P = 1.2e-49
Identities = 112/252 (44%), Positives = 159/252 (63%)
Query: 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG 66
+L DP++ II E +RQ ++I+LIASEN+TS +V +A GT L+NKY+EGYPG RYYG
Sbjct: 16 HLVDTDPEVDSIIKDEIERQKHSIDLIASENFTSTSVFDALGTPLSNKYSEGYPGARYYG 75
Query: 67 GCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQ 122
G + ID +E + R K F+ NVQ SGS AN V+ +++ P + +MG+ L
Sbjct: 76 GNEHIDRMEILCQQRALKAFHVTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLYLP 135
Query: 123 EGGHLTHGMM-----LNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASA 176
+GGHL+HG ++ +F S Y +N + I DY +E A +PK+++AG SA
Sbjct: 136 DGGHLSHGYATENRKISAVSTYFESFPYRVNPETGIIDYDTLEKNAILYRPKVLVAGTSA 195
Query: 177 YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG 236
Y + ID++R IA +Y MVDMAH +GLIAAG P+P +AD +T+TTHKSLRGPRG
Sbjct: 196 YCRLIDYKRMREIADKCGAYLMVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRG 255
Query: 237 GFILMKKKYKKI 248
I ++ + I
Sbjct: 256 AMIFFRRGVRSI 267
>CGD|CAL0001464 [details] [associations]
symbol:SHM2 species:5476 "Candida albicans" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006544
"glycine metabolic process" evidence=ISS] [GO:0006730 "one-carbon
metabolic process" evidence=ISS] [GO:0043332 "mating projection
tip" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
UniPathway:UPA00193 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 CGD:CAL0001464 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0006730 EMBL:AACQ01000046
EMBL:AACQ01000047 GO:GO:0006544 GO:GO:0035999 eggNOG:COG0112
KO:K00600 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
HOGENOM:HOG000239405 EMBL:AF009966 RefSeq:XP_718020.1
RefSeq:XP_718086.1 ProteinModelPortal:O13426 SMR:O13426
STRING:O13426 COMPLUYEAST-2DPAGE:O13426 GeneID:3640306
GeneID:3640372 KEGG:cal:CaO19.13173 KEGG:cal:CaO19.5750
Uniprot:O13426
Length = 470
Score = 538 (194.4 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 114/272 (41%), Positives = 166/272 (61%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+ T ++ +F ++ Y ++ + IDY +E A +PK+++AG SAY + ID+
Sbjct: 144 GYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAYCRLIDY 203
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+R IA + +Y +VDMAH +GLIAAG P+P +AD +T+TTHKSLRGPRG I ++
Sbjct: 204 KRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRR 263
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + IN +VFPG QGGP H IAA A A K+ P+FK YQ+QV
Sbjct: 264 GVRSVNPKTGQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQV 323
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+KNAK L ++G ++VS GT SH++LV L++K+I G E++ E NI NKNSIP
Sbjct: 324 LKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPG 383
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
D + G+R+G+ A+TTRG E + K+V
Sbjct: 384 D-KSALVPGGVRIGAPAMTTRGLGEEDFKKIV 414
Score = 517 (187.1 bits), Expect = 2.2e-48, P = 2.2e-48
Identities = 107/252 (42%), Positives = 157/252 (62%)
Query: 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG 66
+L DP++ +II E RQ ++I LIASEN+T+ AV +A GT + NKY+EGYPG RYYG
Sbjct: 17 HLKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYG 76
Query: 67 GCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQ 122
G + ID +E + R K F NVQ SGS AN V+ +++ P + +MG+ L
Sbjct: 77 GNEHIDRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLP 136
Query: 123 EGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASA 176
GGHL+HG ++ +F ++ Y ++ + IDY +E A +PK+++AG SA
Sbjct: 137 HGGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSA 196
Query: 177 YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG 236
Y + ID++R IA + +Y +VDMAH +GLIAAG P+P +AD +T+TTHKSLRGPRG
Sbjct: 197 YCRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRG 256
Query: 237 GFILMKKKYKKI 248
I ++ + +
Sbjct: 257 AMIFFRRGVRSV 268
>UNIPROTKB|O13426 [details] [associations]
symbol:SHM2 "Serine hydroxymethyltransferase, cytosolic"
species:237561 "Candida albicans SC5314" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0006544 "glycine metabolic process"
evidence=ISS] [GO:0006730 "one-carbon metabolic process"
evidence=ISS] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 CGD:CAL0001464
GO:GO:0005737 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0006730 EMBL:AACQ01000046
EMBL:AACQ01000047 GO:GO:0006544 GO:GO:0035999 eggNOG:COG0112
KO:K00600 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
HOGENOM:HOG000239405 EMBL:AF009966 RefSeq:XP_718020.1
RefSeq:XP_718086.1 ProteinModelPortal:O13426 SMR:O13426
STRING:O13426 COMPLUYEAST-2DPAGE:O13426 GeneID:3640306
GeneID:3640372 KEGG:cal:CaO19.13173 KEGG:cal:CaO19.5750
Uniprot:O13426
Length = 470
Score = 538 (194.4 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 114/272 (41%), Positives = 166/272 (61%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+ T ++ +F ++ Y ++ + IDY +E A +PK+++AG SAY + ID+
Sbjct: 144 GYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSAYCRLIDY 203
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+R IA + +Y +VDMAH +GLIAAG P+P +AD +T+TTHKSLRGPRG I ++
Sbjct: 204 KRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRGAMIFFRR 263
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + IN +VFPG QGGP H IAA A A K+ P+FK YQ+QV
Sbjct: 264 GVRSVNPKTGQEILYDLENPINFSVFPGHQGGPHNHTIAALATALKQANTPEFKEYQEQV 323
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+KNAK L ++G ++VS GT SH++LV L++K+I G E++ E NI NKNSIP
Sbjct: 324 LKNAKALESEFTKKGYKLVSDGTDSHMVLVSLKDKQIDGARVETVCEKINIALNKNSIPG 383
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
D + G+R+G+ A+TTRG E + K+V
Sbjct: 384 D-KSALVPGGVRIGAPAMTTRGLGEEDFKKIV 414
Score = 517 (187.1 bits), Expect = 2.2e-48, P = 2.2e-48
Identities = 107/252 (42%), Positives = 157/252 (62%)
Query: 7 NLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYG 66
+L DP++ +II E RQ ++I LIASEN+T+ AV +A GT + NKY+EGYPG RYYG
Sbjct: 17 HLKDTDPEVDQIIKDEIDRQQHSIVLIASENFTTTAVFDALGTPMCNKYSEGYPGARYYG 76
Query: 67 GCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQ 122
G + ID +E + R K F NVQ SGS AN V+ +++ P + +MG+ L
Sbjct: 77 GNEHIDRMELLCQERALKAFGLTPDKWGVNVQTLSGSPANLQVYQAIMKPHERLMGLDLP 136
Query: 123 EGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASA 176
GGHL+HG ++ +F ++ Y ++ + IDY +E A +PK+++AG SA
Sbjct: 137 HGGHLSHGYQTDSRKISAVSTYFETMPYRVDLETGLIDYDMLEKTAVLYRPKVLVAGTSA 196
Query: 177 YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG 236
Y + ID++R IA + +Y +VDMAH +GLIAAG P+P +AD +T+TTHKSLRGPRG
Sbjct: 197 YCRLIDYKRMREIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADIVTTTTHKSLRGPRG 256
Query: 237 GFILMKKKYKKI 248
I ++ + +
Sbjct: 257 AMIFFRRGVRSV 268
>ASPGD|ASPL0000040474 [details] [associations]
symbol:AN3058 species:162425 "Emericella nidulans"
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=IEA;RCA] [GO:0006520 "cellular amino acid metabolic
process" evidence=RCA] [GO:0043332 "mating projection tip"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006544 "glycine
metabolic process" evidence=IEA] [GO:0006563 "L-serine metabolic
process" evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0006730 "one-carbon metabolic process"
evidence=IEA] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 EMBL:BN001306 GO:GO:0008168 GO:GO:0006544
GO:GO:0035999 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
HOGENOM:HOG000239405 OMA:FRRGVRS ProteinModelPortal:C8VIR5
EnsemblFungi:CADANIAT00010021 Uniprot:C8VIR5
Length = 471
Score = 535 (193.4 bits), Expect = 2.6e-50, P = 2.6e-50
Identities = 112/248 (45%), Positives = 158/248 (63%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+ L DP++ +I+ E QRQ ++ LIASEN+TS AV +A G+ + NKY+EGYPG RYY
Sbjct: 16 DRLVDTDPEVAKIMENEIQRQRESVVLIASENFTSRAVFDALGSPMCNKYSEGYPGARYY 75
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + ID IE + +R K FN +A NVQ SGS AN V+ +++ P D +MG+ L
Sbjct: 76 GGNQHIDAIELLCQSRALKAFNLDADKWGVNVQCLSGSPANLQVYQALMRPHDRLMGLDL 135
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGAS 175
GGHL+HG ++ +F + Y +N + I DY +E A+ +PK+++AG S
Sbjct: 136 PHGGHLSHGYQTPSRKISAVSTYFETFPYRVNLETGIIDYDTLEANAELYRPKILVAGTS 195
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY + ID+ R IA + +Y +VDMAH +GLIAAG P+P +AD +T+TTHKSLRGPR
Sbjct: 196 AYCRLIDYARMRKIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADVVTTTTHKSLRGPR 255
Query: 236 GGFILMKK 243
G I +K
Sbjct: 256 GAMIFFRK 263
Score = 524 (189.5 bits), Expect = 4.0e-49, P = 4.0e-49
Identities = 115/271 (42%), Positives = 160/271 (59%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+ T ++ +F + Y +N + I DY +E A+ +PK+++AG SAY + ID+
Sbjct: 144 GYQTPSRKISAVSTYFETFPYRVNLETGIIDYDTLEANAELYRPKILVAGTSAYCRLIDY 203
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA + +Y +VDMAH +GLIAAG P+P +AD +T+TTHKSLRGPRG I +K
Sbjct: 204 ARMRKIADKVGAYLVVDMAHISGLIAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRK 263
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ IN +VFPG QGGP H I A +VA K +FK YQ+QV
Sbjct: 264 GVRSTDPKTGKDIMYDLEGPINFSVFPGHQGGPHNHTITALSVALKYAATTEFKQYQEQV 323
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+KNAK L G ++VS GT SH++LVDLR K + G E++LE NI CNKNSIP
Sbjct: 324 IKNAKALENEFKAIGHKLVSDGTDSHMVLVDLRPKSLDGARVEAVLEQINIACNKNSIPG 383
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
D + GIR+G+ A+T+RG E + ++
Sbjct: 384 D-KSALTPCGIRIGAPAMTSRGMGEEDFKRI 413
>TAIR|locus:2005518 [details] [associations]
symbol:SHM1 "serine transhydroxymethyltransferase 1"
species:3702 "Arabidopsis thaliana" [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA;ISS;TAS]
[GO:0005739 "mitochondrion" evidence=ISM;IDA] [GO:0006544 "glycine
metabolic process" evidence=IEA;ISS] [GO:0006563 "L-serine
metabolic process" evidence=IEA;ISS] [GO:0019464 "glycine
decarboxylation via glycine cleavage system" evidence=IMP]
[GO:0030170 "pyridoxal phosphate binding" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=ISS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0009507 "chloroplast" evidence=IDA] [GO:0009626
"plant-type hypersensitive response" evidence=TAS] [GO:0022626
"cytosolic ribosome" evidence=IDA] [GO:0046686 "response to cadmium
ion" evidence=IEP] [GO:0009409 "response to cold" evidence=IEP;RCA]
[GO:0010319 "stromule" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009853 "photorespiration" evidence=IMP]
[GO:0016020 "membrane" evidence=IDA] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009534
"chloroplast thylakoid" evidence=IDA] [GO:0009570 "chloroplast
stroma" evidence=IDA] [GO:0009697 "salicylic acid biosynthetic
process" evidence=RCA] [GO:0009814 "defense response, incompatible
interaction" evidence=RCA] [GO:0019684 "photosynthesis, light
reaction" evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0005886
GO:GO:0005634 GO:GO:0046686 GO:GO:0009570 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 EMBL:CP002687 GenomeReviews:CT486007_GR
EMBL:AL161592 GO:GO:0008266 GO:GO:0005759 GO:GO:0048046
GO:GO:0009409 GO:GO:0009626 EMBL:AL035538 GO:GO:0009853
GO:GO:0009534 GO:GO:0022626 GO:GO:0010319 GO:GO:0006544
GO:GO:0035999 eggNOG:COG0112 KO:K00600 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 OMA:GKIDYED HOGENOM:HOG000239405 EMBL:AJ271726
EMBL:AY054254 EMBL:AY057645 EMBL:AY070726 EMBL:AF428388
EMBL:BT006353 IPI:IPI00525727 PIR:T05620 RefSeq:NP_195506.1
UniGene:At.21766 ProteinModelPortal:Q9SZJ5 SMR:Q9SZJ5 IntAct:Q9SZJ5
STRING:Q9SZJ5 PaxDb:Q9SZJ5 PRIDE:Q9SZJ5 ProMEX:Q9SZJ5
EnsemblPlants:AT4G37930.1 GeneID:829949 KEGG:ath:AT4G37930
TAIR:At4g37930 InParanoid:Q9SZJ5 PhylomeDB:Q9SZJ5
ProtClustDB:PLN03226 BioCyc:MetaCyc:AT4G37930-MONOMER
Genevestigator:Q9SZJ5 GermOnline:AT4G37930 Uniprot:Q9SZJ5
Length = 517
Score = 534 (193.0 bits), Expect = 3.4e-50, P = 3.4e-50
Identities = 111/254 (43%), Positives = 161/254 (63%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
N L ++DP+I +II EK RQ +ELI SEN+TS++VM+A G+++TNKY+EGYPG RY
Sbjct: 52 NAPLEEVDPEIADIIEHEKARQWKGLELIPSENFTSVSVMQAVGSVMTNKYSEGYPGARY 111
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG ++ID+ E + R + F + NVQP SGS AN V+ ++L P + IM +
Sbjct: 112 YGGNEYIDMAETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFHVYTALLKPHERIMALD 171
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGA 174
L GGHL+HG ++ +F ++ Y L++ IDY ++E A +PKLI+AGA
Sbjct: 172 LPHGGHLSHGYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGA 231
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
SAY++ D+ R + + + DMAH +GL+AA P+P +AD +T+TTHKSLRGP
Sbjct: 232 SAYARLYDYARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGP 291
Query: 235 RGGFILMKKKYKKI 248
RG I +K K+I
Sbjct: 292 RGAMIFFRKGVKEI 305
Score = 506 (183.2 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 109/270 (40%), Positives = 161/270 (59%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+ T ++ +F ++ Y L++ IDY ++E A +PKLI+AGASAY++ D+
Sbjct: 181 GYQTDTKKISAVSIFFETMPYRLDESTGYIDYDQMEKSATLFRPKLIVAGASAYARLYDY 240
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R + + + DMAH +GL+AA P+P +AD +T+TTHKSLRGPRG I +K
Sbjct: 241 ARIRKVCNKQKAVMLADMAHISGLVAANVIPSPFDYADVVTTTTHKSLRGPRGAMIFFRK 300
Query: 244 KYKKI--------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVV 289
K+I IN AVFPG+QGGP H I AVA K+ ++K YQ+QV+
Sbjct: 301 GVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATTSEYKAYQEQVL 360
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPND 349
N+ ++ L +RG +VSGGT +H++LV+L+ K I G E +LE+ +I NKN++P D
Sbjct: 361 SNSAKFAQTLMERGYELVSGGTDNHLVLVNLKPKGIDGSRVEKVLEAVHIASNKNTVPGD 420
Query: 350 PEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
GIR+G+ A+T+RGF E + KV
Sbjct: 421 VSA-MVPGGIRMGTPALTSRGFVEEDFAKV 449
>UNIPROTKB|E2RIV3 [details] [associations]
symbol:SHMT1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0035999 "tetrahydrofolate interconversion"
evidence=IEA] [GO:0051262 "protein tetramerization" evidence=IEA]
[GO:0046655 "folic acid metabolic process" evidence=IEA]
[GO:0042803 "protein homodimerization activity" evidence=IEA]
[GO:0009113 "purine nucleobase biosynthetic process" evidence=IEA]
[GO:0006565 "L-serine catabolic process" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0030170 "pyridoxal phosphate binding" evidence=IEA] [GO:0006544
"glycine metabolic process" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA]
UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0005739
GO:GO:0005634 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0051262 GO:GO:0009113
GO:GO:0006544 GO:GO:0035999 GO:GO:0046655 GO:GO:0006565 KO:K00600
GO:GO:0004372 PANTHER:PTHR11680 CTD:6470
GeneTree:ENSGT00390000002762 OMA:VDLRESH EMBL:AAEX03003713
EMBL:AAEX03003714 RefSeq:XP_851819.2 Ensembl:ENSCAFT00000028996
GeneID:489536 KEGG:cfa:489536 Uniprot:E2RIV3
Length = 484
Score = 531 (192.0 bits), Expect = 7.1e-50, P = 7.1e-50
Identities = 111/253 (43%), Positives = 161/253 (63%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E L D +++ II KE RQ +ELIASEN+TS AV+EA G+ L NKY+EGYPG+RYY
Sbjct: 24 EPLKDNDTEVYNIIKKESNRQRVGLELIASENFTSRAVLEALGSCLNNKYSEGYPGQRYY 83
Query: 66 GGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG +FID +E + R +++ + NVQP+SGS AN AV+ +++ P IMG+ L
Sbjct: 84 GGTEFIDELEILCQKRALQVYGLDPECWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDL 143
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y +N + I+Y ++E A+ PKLIIAG S
Sbjct: 144 PDGGHLTHGFMTDKKKISATSIFFESMPYKVNPETGYINYDQLEENARLFHPKLIIAGTS 203
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
YS+ +D+ R IA + +Y M DMAH +GL+AAG P+P +++TTHK+LRG R
Sbjct: 204 CYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCR 263
Query: 236 GGFILMKKKYKKI 248
G I ++ + +
Sbjct: 264 AGIIFYRRGVRSV 276
Score = 524 (189.5 bits), Expect = 4.0e-49, P = 4.0e-49
Identities = 113/271 (41%), Positives = 168/271 (61%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G +T ++ + +F S+ Y +N + I+Y ++E A+ PKLIIAG S YS+ +D+
Sbjct: 152 GFMTDKKKISATSIFFESMPYKVNPETGYINYDQLEENARLFHPKLIIAGTSCYSRNLDY 211
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA + +Y M DMAH +GL+AAG P+P +++TTHK+LRG R G I ++
Sbjct: 212 ARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGIIFYRR 271
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + INSAVFPG+QGGP H IA AVA K+ + P+F++YQ QV
Sbjct: 272 GVRSVDPKTGKETLYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRLYQHQV 331
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
V N ++L++ L + G ++V+GG+ +H+ILVDLR+K G AE +LE+ +I CNKN+ P
Sbjct: 332 VANCRVLAETLMELGYKVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 391
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
D + SG+RLG+ A+T+RG E E KV
Sbjct: 392 D-KSALRPSGLRLGTPALTSRGLLEKEFQKV 421
>TIGR_CMR|DET_0585 [details] [associations]
symbol:DET_0585 "DNA polymerase III, gamma and tau
subunits, putative" species:243164 "Dehalococcoides ethenogenes
195" [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0009360 "DNA polymerase III complex" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_181327.1 ProteinModelPortal:Q3Z8X2 STRING:Q3Z8X2
GeneID:3230093 KEGG:det:DET0585 PATRIC:21608239 OMA:ISGDERI
ProtClustDB:PRK14950 BioCyc:DETH243164:GJNF-586-MONOMER
Uniprot:Q3Z8X2
Length = 559
Score = 530 (191.6 bits), Expect = 9.0e-50, P = 9.0e-50
Identities = 115/262 (43%), Positives = 158/262 (60%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
V RK+RP L+GQ H++ +L NAL R+ AYLF G RG GKT+ RILAK +NC
Sbjct: 5 VFYRKWRPQTLADLVGQEHVAHTLKNALSSGRIAQAYLFCGPRGTGKTSTGRILAKAVNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
G G +PC C +C+ I G MD IE+DAAS G++++ +L E+ YAP A
Sbjct: 65 TTNQGKG----EPCNTCPMCLSITEGSSMDVIEIDAASNTGVDDIRELKEKVQYAPALAN 120
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YK+Y+IDEVHML++ A NA+LKTLEEPP + FILATTE K+ T++SRC +F+ ++
Sbjct: 121 YKVYIIDEVHMLSNSASNALLKTLEEPPPRVIFILATTEIHKVLPTIMSRCQRFDFHRVS 180
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQ-AINYSSEKITLNSMQ 618
D+ L I E I E AL LIA A GS RD +L Q A Y +E I+L +Q
Sbjct: 181 LSDMSRKLEKISQAEGINIEPEALKLIARSAGGSFRDGENLLQQIATTYGTE-ISLPQVQ 239
Query: 619 EMLSIIDQKYLIQILDALAEQD 640
L I + + + + + ++D
Sbjct: 240 AALGISGDERIKTLAENILKKD 261
>UNIPROTKB|P34896 [details] [associations]
symbol:SHMT1 "Serine hydroxymethyltransferase, cytosolic"
species:9606 "Homo sapiens" [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0008732 "L-allo-threonine aldolase activity"
evidence=IEA] [GO:0016597 "amino acid binding" evidence=IEA]
[GO:0019264 "glycine biosynthetic process from serine"
evidence=IEA] [GO:0051289 "protein homotetramerization"
evidence=IEA] [GO:0035999 "tetrahydrofolate interconversion"
evidence=IEA] [GO:0042803 "protein homodimerization activity"
evidence=IDA] [GO:0051262 "protein tetramerization" evidence=IDA]
[GO:0046655 "folic acid metabolic process" evidence=IDA;TAS]
[GO:0030170 "pyridoxal phosphate binding" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA;TAS] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IDA;TAS] [GO:0006565
"L-serine catabolic process" evidence=IDA] [GO:0009113 "purine
nucleobase biosynthetic process" evidence=IDA] [GO:0006766 "vitamin
metabolic process" evidence=TAS] [GO:0006767 "water-soluble vitamin
metabolic process" evidence=TAS] [GO:0034641 "cellular nitrogen
compound metabolic process" evidence=TAS] [GO:0044281 "small
molecule metabolic process" evidence=TAS] [GO:0045329 "carnitine
biosynthetic process" evidence=TAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
UniPathway:UPA00193 Reactome:REACT_111217 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 EMBL:L11931
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0042803
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0051262 DrugBank:DB00114
GO:GO:0016597 GO:GO:0051289 GO:GO:0045329 DrugBank:DB00145
DrugBank:DB00116 EMBL:CH471196 GO:GO:0009113 GO:GO:0035999
GO:GO:0046655 GO:GO:0006565 DrugBank:DB01055 GO:GO:0008732
eggNOG:COG0112 KO:K00600 GO:GO:0004372 PANTHER:PTHR11680
HOGENOM:HOG000239405 GO:GO:0019264 CTD:6470 HOVERGEN:HBG002807
OrthoDB:EOG42Z4Q2 EMBL:L23928 EMBL:Y14485 EMBL:Y14486 EMBL:Y14487
EMBL:BC007979 EMBL:BC022874 EMBL:BC038598 IPI:IPI00002519
IPI:IPI00220668 IPI:IPI00220669 PIR:A46746 RefSeq:NP_004160.3
RefSeq:NP_683718.1 UniGene:Hs.513987 UniGene:Hs.636044 PDB:1BJ4
PDBsum:1BJ4 ProteinModelPortal:P34896 SMR:P34896 IntAct:P34896
STRING:P34896 PhosphoSite:P34896 DMDM:462184 PaxDb:P34896
PRIDE:P34896 DNASU:6470 Ensembl:ENST00000316694
Ensembl:ENST00000352886 Ensembl:ENST00000354098 GeneID:6470
KEGG:hsa:6470 UCSC:uc002gsz.3 UCSC:uc002gtb.3 GeneCards:GC17M018231
HGNC:HGNC:10850 HPA:HPA023314 MIM:182144 neXtProt:NX_P34896
PharmGKB:PA35753 InParanoid:P34896 OMA:VDLRESH BindingDB:P34896
ChEMBL:CHEMBL1772927 ChiTaRS:SHMT1 EvolutionaryTrace:P34896
GenomeRNAi:6470 NextBio:25133 ArrayExpress:P34896 Bgee:P34896
CleanEx:HS_SHMT1 Genevestigator:P34896 GermOnline:ENSG00000176974
Uniprot:P34896
Length = 483
Score = 524 (189.5 bits), Expect = 4.0e-49, P = 4.0e-49
Identities = 111/251 (44%), Positives = 156/251 (62%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L D +++ II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RYYGG
Sbjct: 26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+FID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+ L +
Sbjct: 86 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAY 177
GGHLTHG M ++ + +F S+ Y +N I+Y ++E A+ PKLIIAG S Y
Sbjct: 146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 205
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ +++ R IA +Y M DMAH +GL+AAG P+P +T+TTHK+LRG R G
Sbjct: 206 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 265
Query: 238 FILMKKKYKKI 248
I +K K +
Sbjct: 266 MIFYRKGVKSV 276
Score = 519 (187.8 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 116/271 (42%), Positives = 163/271 (60%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G +T ++ + +F S+ Y +N I+Y ++E A+ PKLIIAG S YS+ +++
Sbjct: 152 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEY 211
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA +Y M DMAH +GL+AAG P+P +T+TTHK+LRG R G I +K
Sbjct: 212 ARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK 271
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
K + INSAVFPG+QGGP H IA AVA K+ + +FK+YQ QV
Sbjct: 272 GVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQV 331
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
V N + LS+ L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I CNKN+ P
Sbjct: 332 VANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 391
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
D SG+RLG+ A+T+RG E + KV
Sbjct: 392 D-RSALRPSGLRLGTPALTSRGLLEKDFQKV 421
>UNIPROTKB|A8MYA6 [details] [associations]
symbol:SHMT1 "Serine hydroxymethyltransferase, cytosolic"
species:9606 "Homo sapiens" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0006544
"glycine metabolic process" evidence=IEA] [GO:0006563 "L-serine
metabolic process" evidence=IEA] [GO:0030170 "pyridoxal phosphate
binding" evidence=IEA] [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] UniPathway:UPA00193
HAMAP:MF_00051 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0005634 GO:GO:0005737
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0006544 GO:GO:0035999
EMBL:AC127537 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
HOGENOM:HOG000239405 HOVERGEN:HBG002807 HGNC:HGNC:10850
ChiTaRS:SHMT1 EMBL:AL353997 IPI:IPI00793862
ProteinModelPortal:A8MYA6 SMR:A8MYA6 STRING:A8MYA6
Ensembl:ENST00000395685 ArrayExpress:A8MYA6 Bgee:A8MYA6
Uniprot:A8MYA6
Length = 446
Score = 524 (189.5 bits), Expect = 4.0e-49, P = 4.0e-49
Identities = 111/251 (44%), Positives = 156/251 (62%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L D +++ II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RYYGG
Sbjct: 26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+FID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+ L +
Sbjct: 86 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAY 177
GGHLTHG M ++ + +F S+ Y +N I+Y ++E A+ PKLIIAG S Y
Sbjct: 146 GGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCY 205
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ +++ R IA +Y M DMAH +GL+AAG P+P +T+TTHK+LRG R G
Sbjct: 206 SRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 265
Query: 238 FILMKKKYKKI 248
I +K K +
Sbjct: 266 MIFYRKGVKSV 276
Score = 469 (170.2 bits), Expect = 3.0e-43, P = 3.0e-43
Identities = 103/239 (43%), Positives = 145/239 (60%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G +T ++ + +F S+ Y +N I+Y ++E A+ PKLIIAG S YS+ +++
Sbjct: 152 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEY 211
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA +Y M DMAH +GL+AAG P+P +T+TTHK+LRG R G I +K
Sbjct: 212 ARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK 271
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
K + INSAVFPG+QGGP H IA AVA K+ + +FK+YQ QV
Sbjct: 272 GVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQV 331
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIP 347
V N + LS+ L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I CNKN+ P
Sbjct: 332 VANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCP 390
>UNIPROTKB|Q5E9P9 [details] [associations]
symbol:SHMT1 "Serine hydroxymethyltransferase, cytosolic"
species:9913 "Bos taurus" [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] [GO:0051262 "protein
tetramerization" evidence=IEA] [GO:0046655 "folic acid metabolic
process" evidence=IEA] [GO:0042803 "protein homodimerization
activity" evidence=IEA] [GO:0009113 "purine nucleobase biosynthetic
process" evidence=IEA] [GO:0006565 "L-serine catabolic process"
evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0030170
"pyridoxal phosphate binding" evidence=IEA] [GO:0006544 "glycine
metabolic process" evidence=IEA] UniPathway:UPA00193
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
GO:GO:0005739 GO:GO:0005634 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0051262 GO:GO:0009113 GO:GO:0006544 GO:GO:0035999
GO:GO:0046655 GO:GO:0006565 eggNOG:COG0112 KO:K00600 GO:GO:0004372
PANTHER:PTHR11680 HOGENOM:HOG000239405 EMBL:BT020871 EMBL:BC112563
IPI:IPI00695792 RefSeq:NP_001015553.1 UniGene:Bt.88340
ProteinModelPortal:Q5E9P9 SMR:Q5E9P9 STRING:Q5E9P9 PRIDE:Q5E9P9
Ensembl:ENSBTAT00000022732 GeneID:509002 KEGG:bta:509002 CTD:6470
GeneTree:ENSGT00390000002762 HOVERGEN:HBG002807 InParanoid:Q5E9P9
OrthoDB:EOG42Z4Q2 NextBio:20868773 Uniprot:Q5E9P9
Length = 484
Score = 522 (188.8 bits), Expect = 6.5e-49, P = 6.5e-49
Identities = 108/247 (43%), Positives = 158/247 (63%)
Query: 12 DPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFI 71
D +++ II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RYYGG +FI
Sbjct: 30 DVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGGTEFI 89
Query: 72 DLIEKIAINRLKKIFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
D +E + R +++ ++ NVQP+SGS AN AV+ +++ P IMG+ L +GGHL
Sbjct: 90 DELEVLCQKRALQVYGLDSQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPDGGHL 149
Query: 128 THGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYI 181
THG M ++ + +F S+ Y +N I+Y ++E A+ P+LIIAG S YS+ +
Sbjct: 150 THGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNL 209
Query: 182 DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILM 241
D+ R IA + +Y M DMAH +GL+AAG P+P +++TTHK+LRG R G I
Sbjct: 210 DYARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFY 269
Query: 242 KKKYKKI 248
+K + +
Sbjct: 270 RKGVRSV 276
Score = 516 (186.7 bits), Expect = 2.8e-48, P = 2.8e-48
Identities = 114/271 (42%), Positives = 167/271 (61%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G +T ++ + +F S+ Y +N I+Y ++E A+ P+LIIAG S YS+ +D+
Sbjct: 152 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPRLIIAGTSCYSRNLDY 211
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA + +Y M DMAH +GL+AAG P+P +++TTHK+LRG R G I +K
Sbjct: 212 ARLRKIADDNGAYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRK 271
Query: 244 -------------KY--KKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+Y + +INSAVFPG+QGGP H IA AVA K+ + P+F+ YQ+QV
Sbjct: 272 GVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQV 331
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
V N + L++ L G R+V+GG+ +H+ILVDLR+K G AE +LE+ +I CNKN+ P
Sbjct: 332 VANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 391
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
D + SG+RLG+ A+T+RG E + KV
Sbjct: 392 D-KSALRPSGLRLGTPALTSRGLLEEDFQKV 421
>MGI|MGI:98299 [details] [associations]
symbol:Shmt1 "serine hydroxymethyltransferase 1 (soluble)"
species:10090 "Mus musculus" [GO:0003824 "catalytic activity"
evidence=IEA] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0006544 "glycine metabolic process" evidence=ISO]
[GO:0006545 "glycine biosynthetic process" evidence=ISO]
[GO:0006563 "L-serine metabolic process" evidence=IEA] [GO:0006565
"L-serine catabolic process" evidence=ISO] [GO:0006730 "one-carbon
metabolic process" evidence=IEA] [GO:0008732 "L-allo-threonine
aldolase activity" evidence=ISO] [GO:0009113 "purine nucleobase
biosynthetic process" evidence=ISO] [GO:0016597 "amino acid
binding" evidence=ISO] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0019264 "glycine biosynthetic process from
serine" evidence=ISO] [GO:0030170 "pyridoxal phosphate binding"
evidence=ISO] [GO:0042802 "identical protein binding" evidence=ISO]
[GO:0042803 "protein homodimerization activity" evidence=ISO]
[GO:0046655 "folic acid metabolic process" evidence=ISO]
[GO:0051262 "protein tetramerization" evidence=ISO] [GO:0051289
"protein homotetramerization" evidence=ISO] UniPathway:UPA00193
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
MGI:MGI:98299 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0016597 GO:GO:0051289
GO:GO:0009113 GO:GO:0035999 GO:GO:0046655 GO:GO:0006565
EMBL:AL596215 GO:GO:0008732 eggNOG:COG0112 KO:K00600 GO:GO:0004372
PANTHER:PTHR11680 HOGENOM:HOG000239405 GO:GO:0019264 CTD:6470
GeneTree:ENSGT00390000002762 HOVERGEN:HBG002807 OrthoDB:EOG42Z4Q2
ChiTaRS:SHMT1 EMBL:AF237702 EMBL:BC026055 EMBL:X94478 EMBL:X94479
IPI:IPI00118059 PIR:JC4959 RefSeq:NP_033197.2 UniGene:Mm.364956
PDB:1EJI PDBsum:1EJI ProteinModelPortal:P50431 SMR:P50431
STRING:P50431 PhosphoSite:P50431 REPRODUCTION-2DPAGE:P50431
SWISS-2DPAGE:P50431 PaxDb:P50431 PRIDE:P50431
Ensembl:ENSMUST00000018744 GeneID:20425 KEGG:mmu:20425
InParanoid:Q8R0X9 OMA:KEALEPW ChEMBL:CHEMBL4396
EvolutionaryTrace:P50431 NextBio:298438 Bgee:P50431
CleanEx:MM_SHMT1 Genevestigator:P50431
GermOnline:ENSMUSG00000020534 Uniprot:P50431
Length = 478
Score = 521 (188.5 bits), Expect = 8.3e-49, P = 8.3e-49
Identities = 110/254 (43%), Positives = 159/254 (62%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
++ L D +++ II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RY
Sbjct: 17 SQPLKDSDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRY 76
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG +FID +E + R + ++ + NVQP+SGS AN AV+ +++ P IMG+
Sbjct: 77 YGGTEFIDELEMLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLD 136
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGA 174
L +GGHLTHG M ++ + +F S+ Y + + I+Y ++E A PKLIIAG
Sbjct: 137 LPDGGHLTHGFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGT 196
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
S YS+ +D+ R IA + +Y M DMAH +GL+AAG P+P +T+TTHK+LRG
Sbjct: 197 SCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGC 256
Query: 235 RGGFILMKKKYKKI 248
R G I +K + +
Sbjct: 257 RAGMIFYRKGVRSV 270
Score = 508 (183.9 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 114/271 (42%), Positives = 164/271 (60%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G +T ++ + +F S+ Y + + I+Y ++E A PKLIIAG S YS+ +D+
Sbjct: 146 GFMTDKKKISATSIFFESMPYKVYPETGYINYDQLEENASLFHPKLIIAGTSCYSRNLDY 205
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA + +Y M DMAH +GL+AAG P+P +T+TTHK+LRG R G I +K
Sbjct: 206 ARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK 265
Query: 244 ---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + +INSAVFPG+QGGP H IA AVA K+ + +FKIYQ QV
Sbjct: 266 GVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQV 325
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+ N + LS L + G +IV+GG+ +H+IL+DLR+K G AE +LE+ +I CNKN+ P
Sbjct: 326 LANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPG 385
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
D + SG+RLG+ A+T+RG E + KV
Sbjct: 386 D-KSALRPSGLRLGTPALTSRGLLEEDFQKV 415
>RGD|1312011 [details] [associations]
symbol:Shmt1 "serine hydroxymethyltransferase 1 (soluble)"
species:10116 "Rattus norvegicus" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISO;IDA;TAS]
[GO:0005634 "nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=ISO] [GO:0005739 "mitochondrion" evidence=IEA;ISO]
[GO:0005829 "cytosol" evidence=ISO;IDA;TAS] [GO:0006544 "glycine
metabolic process" evidence=IDA;TAS] [GO:0006545 "glycine
biosynthetic process" evidence=IDA] [GO:0006563 "L-serine metabolic
process" evidence=TAS] [GO:0006565 "L-serine catabolic process"
evidence=IEA;ISO] [GO:0008732 "L-allo-threonine aldolase activity"
evidence=IDA] [GO:0009113 "purine nucleobase biosynthetic process"
evidence=IEA;ISO] [GO:0016597 "amino acid binding" evidence=IPI]
[GO:0019264 "glycine biosynthetic process from serine"
evidence=IDA] [GO:0030170 "pyridoxal phosphate binding"
evidence=ISO;IDA;TAS] [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] [GO:0042802 "identical protein
binding" evidence=IDA] [GO:0042803 "protein homodimerization
activity" evidence=IEA;ISO] [GO:0046655 "folic acid metabolic
process" evidence=IEA;ISO] [GO:0051262 "protein tetramerization"
evidence=ISO] [GO:0051289 "protein homotetramerization"
evidence=IDA] UniPathway:UPA00193 HAMAP:MF_00051 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PROSITE:PS00096 RGD:1312011 GO:GO:0005829
GO:GO:0005739 GO:GO:0005634 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0016597 GO:GO:0051289 GO:GO:0042802 GO:GO:0009113
GO:GO:0035999 GO:GO:0046655 GO:GO:0006565 GO:GO:0008732 KO:K00600
GO:GO:0004372 PANTHER:PTHR11680 HOGENOM:HOG000239405 GO:GO:0019264
CTD:6470 GeneTree:ENSGT00390000002762 HOVERGEN:HBG002807
OrthoDB:EOG42Z4Q2 UniGene:Rn.3684 EMBL:AY383687 IPI:IPI00421364
RefSeq:NP_001041307.1 SMR:Q6TXG7 STRING:Q6TXG7
Ensembl:ENSRNOT00000007092 GeneID:287379 KEGG:rno:287379
UCSC:RGD:1312011 InParanoid:Q6TXG7 NextBio:625985
Genevestigator:Q6TXG7 Uniprot:Q6TXG7
Length = 681
Score = 520 (188.1 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 110/251 (43%), Positives = 157/251 (62%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L + D +++ II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RYYGG
Sbjct: 223 LKESDAEVYSIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 282
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+FID +E + R + ++ + NVQP+SGS AN AV+ +++ P IMG+ L +
Sbjct: 283 TEFIDELETLCQKRALQAYHLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 342
Query: 124 GGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAY 177
GGHLTHG M ++ + +F S+ Y + I+Y ++E A PKLIIAG S Y
Sbjct: 343 GGHLTHGFMTDKKKISATSIFFESMPYKVYPDTGYINYDQLEENASLFHPKLIIAGTSCY 402
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGG 237
S+ +D+ R IA + +Y M DMAH +GL+AAG P+P +T+TTHK+LRG R G
Sbjct: 403 SRNLDYARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAG 462
Query: 238 FILMKKKYKKI 248
I +K + +
Sbjct: 463 MIFYRKGVRSV 473
Score = 502 (181.8 bits), Expect = 8.9e-47, P = 8.9e-47
Identities = 113/271 (41%), Positives = 162/271 (59%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G +T ++ + +F S+ Y + I+Y ++E A PKLIIAG S YS+ +D+
Sbjct: 349 GFMTDKKKISATSIFFESMPYKVYPDTGYINYDQLEENASLFHPKLIIAGTSCYSRNLDY 408
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA + +Y M DMAH +GL+AAG P+P +T+TTHK+LRG R G I +K
Sbjct: 409 ARLRKIADDNGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK 468
Query: 244 ---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + +INSAVFPG+QGGP H IA AVA K+ + +FKIYQ QV
Sbjct: 469 GVRSVDPKTGEETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQV 528
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
+ N + LS L + G +IV+GG+ +H+IL+DLR K G AE +LE+ +I CNKN+ P
Sbjct: 529 LANCRALSDALTELGYKIVTGGSDNHLILMDLRPKGTDGGRAEKVLEACSIACNKNTCPG 588
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
D + SG+RLG+ A+T+RG E + K+
Sbjct: 589 D-KSALRPSGLRLGTPALTSRGLLEEDFQKI 618
>UNIPROTKB|B4DPM9 [details] [associations]
symbol:SHMT1 "Serine hydroxymethyltransferase" species:9606
"Homo sapiens" [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0008732 "L-allo-threonine
aldolase activity" evidence=IEA] [GO:0016597 "amino acid binding"
evidence=IEA] [GO:0019264 "glycine biosynthetic process from
serine" evidence=IEA] [GO:0042802 "identical protein binding"
evidence=IEA] [GO:0051289 "protein homotetramerization"
evidence=IEA] [GO:0035999 "tetrahydrofolate interconversion"
evidence=IEA] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 InterPro:IPR019798
Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0005829
GO:GO:0005739 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0016597 GO:GO:0051289
GO:GO:0008168 GO:GO:0035999 EMBL:AC127537 GO:GO:0008732
GO:GO:0004372 PANTHER:PTHR11680 GO:GO:0019264 HOVERGEN:HBG002807
UniGene:Hs.513987 UniGene:Hs.636044 HGNC:HGNC:10850 ChiTaRS:SHMT1
EMBL:AL353997 EMBL:AK298415 IPI:IPI01015924 SMR:B4DPM9
STRING:B4DPM9 Ensembl:ENST00000539052 Uniprot:B4DPM9
Length = 345
Score = 519 (187.8 bits), Expect = 1.4e-48, P = 1.4e-48
Identities = 116/271 (42%), Positives = 163/271 (60%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G +T ++ + +F S+ Y +N I+Y ++E A+ PKLIIAG S YS+ +++
Sbjct: 14 GFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLIIAGTSCYSRNLEY 73
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA +Y M DMAH +GL+AAG P+P +T+TTHK+LRG R G I +K
Sbjct: 74 ARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRK 133
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
K + INSAVFPG+QGGP H IA AVA K+ + +FK+YQ QV
Sbjct: 134 GVKSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQV 193
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
V N + LS+ L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I CNKN+ P
Sbjct: 194 VANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPG 253
Query: 349 DPEKPYFTSGIRLGSSAITTRGFSELEIIKV 379
D SG+RLG+ A+T+RG E + KV
Sbjct: 254 D-RSALRPSGLRLGTPALTSRGLLEKDFQKV 283
Score = 270 (100.1 bits), Expect = 5.1e-22, P = 5.1e-22
Identities = 58/138 (42%), Positives = 83/138 (60%)
Query: 117 MGMSLQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLI 170
MG+ L +GGHLTHG M ++ + +F S+ Y +N I+Y ++E A+ PKLI
Sbjct: 1 MGLDLPDGGHLTHGFMTDKKKISATSIFFESMPYKVNPDTGYINYDQLEENARLFHPKLI 60
Query: 171 IAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKS 230
IAG S YS+ +++ R IA +Y M DMAH +GL+AAG P+P +T+TTHK+
Sbjct: 61 IAGTSCYSRNLEYARLRKIADENGAYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKT 120
Query: 231 LRGPRGGFILMKKKYKKI 248
LRG R G I +K K +
Sbjct: 121 LRGCRAGMIFYRKGVKSV 138
>UNIPROTKB|O83970 [details] [associations]
symbol:TP_1005 "DNA polymerase III, subunits gamma and tau
(DnaH)" species:243276 "Treponema pallidum subsp. pallidum str.
Nichols" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001270 InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 PRINTS:PR00300
SMART:SM00382 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 EMBL:AE000520 GenomeReviews:AE000520_GR
GO:GO:0009360 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
HSSP:P06710 PIR:G71254 RefSeq:NP_219442.1 ProteinModelPortal:O83970
IntAct:O83970 GeneID:2610796 KEGG:tpa:TP1005 PATRIC:20532135
OMA:ANAYIFS ProtClustDB:PRK06647 Uniprot:O83970
Length = 572
Score = 514 (186.0 bits), Expect = 4.6e-48, P = 4.6e-48
Identities = 104/272 (38%), Positives = 162/272 (59%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
V A +YRP F ++GQ + +L +L++ ++ AYLF+G G GKT+ +RILAK LNC
Sbjct: 5 VTATRYRPQRFQHVLGQKFVVATLQKSLEENKVSPAYLFSGPHGCGKTSCARILAKALNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
+ + S+PCG+C C +I G ++ IE+D AS G+ ++ Q+ E+ ++ P R
Sbjct: 65 VQREA-----SEPCGECPSCREIATGTNLNVIEIDGASHTGVGDVRQIKEEILFPPHGTR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YK+++IDEVHML++ AFNA+LKT+EEPP Y+ FI ATTE +IP TV SRC QF+ + +
Sbjct: 120 YKVFIIDEVHMLSNSAFNALLKTIEEPPPYVVFIFATTEVHRIPATVKSRCQQFHFRLVD 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
+V L + I E L+ IA + GSMRDA +L DQ + + +TL ++Q+
Sbjct: 180 TQTLVCALAQAAQQMQIAVEDGVLSWIARESAGSMRDAYTLFDQTVVSCAGPVTLENIQK 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKI 651
L ++ L + +D L + + +
Sbjct: 240 KLGLMTDDSLAALFSHCCRKDARAALELVDAL 271
>UNIPROTKB|G4NDG3 [details] [associations]
symbol:MGG_00923 "Serine hydroxymethyltransferase"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] UniPathway:UPA00193 HAMAP:MF_00051
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 EMBL:CM001235 GO:GO:0008168
GO:GO:0043581 GO:GO:0006544 GO:GO:0035999 KO:K00600 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 RefSeq:XP_003718036.1
ProteinModelPortal:G4NDG3 SMR:G4NDG3 EnsemblFungi:MGG_00923T0
GeneID:2674480 KEGG:mgr:MGG_00923 Uniprot:G4NDG3
Length = 482
Score = 507 (183.5 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 110/263 (41%), Positives = 158/263 (60%)
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
G+ T ++ +F ++ Y ++ + I DY ++E +PK+++AG SAY + ID+
Sbjct: 146 GYQTPQRKISAVSTYFETMPYRVDLETGIIDYDQLEKNVVLYRPKILVAGTSAYCRLIDY 205
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
R IA + +Y +VD+AH +GL+A+G P+P AD +T+TTHKSLRGPRG I ++
Sbjct: 206 ARMRKIADLVGAYLVVDIAHISGLVASGVIPSPFLHADVVTTTTHKSLRGPRGAMIFFRR 265
Query: 244 KYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
+ + IN +VFPG QGGP H I A AVA K+ P+FK YQ+QV
Sbjct: 266 GVRSVDPKTGKETMYDLEEPINFSVFPGHQGGPHNHTITALAVALKQASTPEFKAYQQQV 325
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPN 348
V NAK L + G ++VS GT SH++LVDLR + G E++LE NI CNKNSIP
Sbjct: 326 VDNAKALENSFKELGHKLVSDGTDSHMVLVDLRAHSLDGARVEAVLEQINIACNKNSIPG 385
Query: 349 DPEKPYFTSGIRLGSSAITTRGF 371
D + GIR+G+ A+T+RGF
Sbjct: 386 D-KSALTPCGIRIGTPAMTSRGF 407
Score = 493 (178.6 bits), Expect = 8.2e-46, P = 8.2e-46
Identities = 106/253 (41%), Positives = 156/253 (61%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
++L DP++ EI+ E QRQ +I LIASEN TS AV +A G+ ++NKY+EGYPGKRYY
Sbjct: 18 KSLLDSDPEVAEIMKHEIQRQRESIILIASENVTSRAVFDALGSPMSNKYSEGYPGKRYY 77
Query: 66 GGCKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + ID IE + R FN NVQ SGS AN V+ +++ P +MG+ L
Sbjct: 78 GGNQHIDEIELLCQRRALAAFNVTEDKWGVNVQCLSGSPANLQVYQAIMPPHGRLMGLDL 137
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEKI-DYKKVEYLAKKNKPKLIIAGAS 175
GGHL+HG ++ +F ++ Y ++ + I DY ++E +PK+++AG S
Sbjct: 138 PHGGHLSHGYQTPQRKISAVSTYFETMPYRVDLETGIIDYDQLEKNVVLYRPKILVAGTS 197
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
AY + ID+ R IA + +Y +VD+AH +GL+A+G P+P AD +T+TTHKSLRGPR
Sbjct: 198 AYCRLIDYARMRKIADLVGAYLVVDIAHISGLVASGVIPSPFLHADVVTTTTHKSLRGPR 257
Query: 236 GGFILMKKKYKKI 248
G I ++ + +
Sbjct: 258 GAMIFFRRGVRSV 270
>UNIPROTKB|Q2GDS0 [details] [associations]
symbol:NSE_0492 "Putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 506 (183.2 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 105/282 (37%), Positives = 167/282 (59%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
LA KYRP + ++GQ+ + K L ++ + + A L +G G GKTT +R + L C+
Sbjct: 6 LANKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCL 65
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
++ PC KC C+ I +G D +E+DAAS G+ ++ L+E +Y P+ ++Y
Sbjct: 66 N-----RTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKY 120
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K Y++DEVHML+ AF+A+LK LEEPP+++KF LATTE QKIP T++SRC + L ++
Sbjct: 121 KSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSR 180
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE-KITLNSMQE 619
I L + KE I+ A+ IA A GS+RDALSL +Q + SE KIT++ ++
Sbjct: 181 VVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVHVLRN 240
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIV 661
+ ++D + +LD++ D L N ++Y+ Y ++
Sbjct: 241 KMGLVDLSEVYMLLDSIIAGDCKTSLGKLN--DLYSKGYEML 280
>TIGR_CMR|NSE_0492 [details] [associations]
symbol:NSE_0492 "putative DNA polymerase III, gamma/tau
subunit" species:222891 "Neorickettsia sennetsu str. Miyayama"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006259 "DNA metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0006259 GO:GO:0017111
EMBL:CP000237 GenomeReviews:CP000237_GR GO:GO:0003887 GO:GO:0009360
eggNOG:COG2812 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
RefSeq:YP_506376.1 ProteinModelPortal:Q2GDS0 STRING:Q2GDS0
GeneID:3931782 KEGG:nse:NSE_0492 PATRIC:22681033
HOGENOM:HOG000127275 OMA:IKEEIWI ProtClustDB:CLSK2528078
BioCyc:NSEN222891:GHFU-512-MONOMER Uniprot:Q2GDS0
Length = 396
Score = 506 (183.2 bits), Expect = 3.3e-47, P = 3.3e-47
Identities = 105/282 (37%), Positives = 167/282 (59%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
LA KYRP + ++GQ+ + K L ++ + + A L +G G GKTT +R + L C+
Sbjct: 6 LANKYRPRLLDEIVGQDFLVKCLSASIARDEVAGAILLSGPYGTGKTTTARAVTLSLLCL 65
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
++ PC KC C+ I +G D +E+DAAS G+ ++ L+E +Y P+ ++Y
Sbjct: 66 N-----RTSALPCLKCDSCISILSGSHPDILEIDAASNTGVEDVRMLIEGALYKPLLSKY 120
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K Y++DEVHML+ AF+A+LK LEEPP+++KF LATTE QKIP T++SRC + L ++
Sbjct: 121 KSYIVDEVHMLSQSAFSALLKLLEEPPQHVKFFLATTELQKIPATIISRCQHYRLSRLSR 180
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE-KITLNSMQE 619
I L + KE I+ A+ IA A GS+RDALSL +Q + SE KIT++ ++
Sbjct: 181 VVIAERLTQVAEKEQIEITQDAIKFIAEKADGSLRDALSLLEQVTLHPSEGKITVHVLRN 240
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIV 661
+ ++D + +LD++ D L N ++Y+ Y ++
Sbjct: 241 KMGLVDLSEVYMLLDSIIAGDCKTSLGKLN--DLYSKGYEML 280
>UNIPROTKB|Q4KLG7 [details] [associations]
symbol:Shmt1 "Serine hydroxymethyltransferase"
species:10116 "Rattus norvegicus" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0006544
"glycine metabolic process" evidence=IEA] [GO:0006563 "L-serine
metabolic process" evidence=IEA] [GO:0030170 "pyridoxal phosphate
binding" evidence=IEA] [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] UniPathway:UPA00193
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PIRSF:PIRSF000412 PROSITE:PS00096
RGD:1312011 GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0006544 GO:GO:0035999
eggNOG:COG0112 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
HOGENOM:HOG000239405 HOVERGEN:HBG002807 EMBL:BC099219
IPI:IPI00627076 UniGene:Rn.3684 STRING:Q4KLG7
Ensembl:ENSRNOT00000057973 OMA:MTPEFKL Genevestigator:Q4KLG7
Uniprot:Q4KLG7
Length = 352
Score = 496 (179.7 bits), Expect = 3.9e-46, P = 3.9e-46
Identities = 108/242 (44%), Positives = 150/242 (61%)
Query: 153 IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE 212
I+Y ++E A PKLIIAG S YS+ +D+ R IA + +Y M DMAH +GL+AAG
Sbjct: 49 INYDQLEENASLFHPKLIIAGTSCYSRNLDYARLRKIADDNGAYLMADMAHISGLVAAGV 108
Query: 213 YPNPVPFADFITSTTHKSLRGPRGGFILMKK---------------KYKKIINSAVFPGI 257
P+P +T+TTHK+LRG R G I +K + + +INSAVFPG+
Sbjct: 109 VPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGEETYYELESLINSAVFPGL 168
Query: 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317
QGGP H IA AVA K+ + +FKIYQ QV+ N + LS L + G +IV+GG+ +H+IL
Sbjct: 169 QGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLIL 228
Query: 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEII 377
+DLR K G AE +LE+ +I CNKN+ P D + SG+RLG+ A+T+RG E +
Sbjct: 229 MDLRPKGTDGGRAEKVLEACSIACNKNTCPGD-KSALRPSGLRLGTPALTSRGLLEEDFQ 287
Query: 378 KV 379
K+
Sbjct: 288 KI 289
>UNIPROTKB|B4DLV4 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase" species:9606
"Homo sapiens" [GO:0006544 "glycine metabolic process"
evidence=IEA] [GO:0006563 "L-serine metabolic process"
evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0008168 "methyltransferase activity"
evidence=IEA] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=IEA] [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
UniPathway:UPA00193 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464
PIRSF:PIRSF000412 PROSITE:PS00096 GO:GO:0005739 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 GO:GO:0015630 EMBL:CH471054 GO:GO:0008168
GO:GO:0006544 GO:GO:0035999 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 HOGENOM:HOG000239405 HOVERGEN:HBG002807
EMBL:AC137834 UniGene:Hs.741179 HGNC:HGNC:10852 ChiTaRS:SHMT2
EMBL:AK297173 IPI:IPI00794549 SMR:B4DLV4 STRING:B4DLV4
Ensembl:ENST00000393827 UCSC:uc001snj.2 Uniprot:B4DLV4
Length = 408
Score = 487 (176.5 bits), Expect = 3.6e-45, P = 3.6e-45
Identities = 106/255 (41%), Positives = 152/255 (59%)
Query: 142 SICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVD 200
++C + K IDY ++ A+ +P+LIIAG SAY++ ID+ R + + ++ + D
Sbjct: 96 AVCVSVQPKTGLIDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLAD 155
Query: 201 MAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKI------------ 248
MAH +GL+AA P+P AD +T+TTHK+LRG R G I +K K +
Sbjct: 156 MAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTF 215
Query: 249 ---INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIR 305
IN AVFP +QGGP H IAA AVA K+ P F+ Y QV+KNA+ ++ L +RG
Sbjct: 216 EDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS 275
Query: 306 IVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSA 365
+VSGGT +H++LVDLR K + G AE +LE +I NKN+ P D G+RLG+ A
Sbjct: 276 LVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGD-RSAITPGGLRLGAPA 334
Query: 366 ITTRGFSELEIIKVV 380
+T+R F E + +VV
Sbjct: 335 LTSRQFREDDFRRVV 349
>UNIPROTKB|H0YIZ0 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase" species:9606
"Homo sapiens" [GO:0006544 "glycine metabolic process"
evidence=IEA] [GO:0006563 "L-serine metabolic process"
evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=IEA] [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] UniPathway:UPA00193
InterPro:IPR001085 InterPro:IPR015421 InterPro:IPR015422
InterPro:IPR019798 Pfam:PF00464 PROSITE:PS00096 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 GO:GO:0006544 GO:GO:0035999 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 EMBL:AC137834 HGNC:HGNC:10852
ChiTaRS:SHMT2 Ensembl:ENST00000557529 Uniprot:H0YIZ0
Length = 264
Score = 482 (174.7 bits), Expect = 1.2e-44, P = 1.2e-44
Identities = 104/243 (42%), Positives = 147/243 (60%)
Query: 153 IDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGE 212
IDY ++ A+ +P+LIIAG SAY++ ID+ R + + ++ + DMAH +GL+AA
Sbjct: 4 IDYNQLALTARLFRPRLIIAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKV 63
Query: 213 YPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKI---------------INSAVFPGI 257
P+P AD +T+TTHK+LRG R G I +K K + IN AVFP +
Sbjct: 64 IPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSL 123
Query: 258 QGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIIL 317
QGGP H IAA AVA K+ P F+ Y QV+KNA+ ++ L +RG +VSGGT +H++L
Sbjct: 124 QGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVL 183
Query: 318 VDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEII 377
VDLR K + G AE +LE +I NKN+ P D G+RLG+ A+T+R F E +
Sbjct: 184 VDLRPKGLDGARAERVLELVSITANKNTCPGD-RSAITPGGLRLGAPALTSRQFREDDFR 242
Query: 378 KVV 380
+VV
Sbjct: 243 RVV 245
>UNIPROTKB|P63975 [details] [associations]
symbol:dnaX "DNA polymerase III subunit gamma/tau"
species:1773 "Mycobacterium tuberculosis" [GO:0040007 "growth"
evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
InterPro:IPR012763 InterPro:IPR022754 Pfam:PF12169 SMART:SM00382
GO:GO:0005524 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0003677 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
HOGENOM:HOG000083933 KO:K02343 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
PIR:B70796 RefSeq:NP_218238.1 RefSeq:NP_338379.1
RefSeq:YP_006517213.1 ProteinModelPortal:P63975 SMR:P63975
PRIDE:P63975 EnsemblBacteria:EBMYCT00000002188
EnsemblBacteria:EBMYCT00000072154 GeneID:13317335 GeneID:885361
GeneID:922673 KEGG:mtc:MT3824 KEGG:mtu:Rv3721c KEGG:mtv:RVBD_3721c
PATRIC:18130168 TubercuList:Rv3721c OMA:IARVEPH
ProtClustDB:PRK14952 Uniprot:P63975
Length = 578
Score = 478 (173.3 bits), Expect = 3.3e-44, P = 3.3e-44
Identities = 99/265 (37%), Positives = 158/265 (59%)
Query: 379 VVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLN 438
+ L RKYRP++F ++GQ H++ L ALD R++HAYLF+G RG GKT+ +RILA+ LN
Sbjct: 1 MALYRKYRPASFAEVVGQEHVTAPLSVALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60
Query: 439 CIGIDGNGGITSQPCGKCSVCVKIDNGC--FMDYIEMDAASTRGINEMAQLLEQTIYAPI 496
C G T+ PCG C CV + +D +E+DAAS G+++ +L ++ YAP+
Sbjct: 61 CAQ-----GPTANPCGVCESCVSLAPNAPGSIDVVELDAASHGGVDDTRELRDRAFYAPV 115
Query: 497 NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK 556
+RY+++++DE HM+T FNA+LK +EEPP+++ FI ATTEP+K+ T+ SR + +
Sbjct: 116 QSRYRVFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEKVLPTIRSRTHHYPFR 175
Query: 557 KMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEK-ITLN 615
+ + L I +E + + + L+ GS RD LS+ DQ + +++ +T
Sbjct: 176 LLPPRTMRALLARICEQEGVVVDDAVYPLVIRAGGGSPRDTLSVLDQLLAGAADTHVTYT 235
Query: 616 SMQEMLSIIDQKYLIQILDALAEQD 640
+L + D + +DALA D
Sbjct: 236 RALGLLGVTDVALIDDAVDALAACD 260
>UNIPROTKB|G3V2Y4 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase" species:9606
"Homo sapiens" [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] [GO:0004372 "glycine hydroxymethyltransferase
activity" evidence=IEA] [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005758 "mitochondrial intermembrane space"
evidence=IEA] [GO:0005759 "mitochondrial matrix" evidence=IEA]
[GO:0006564 "L-serine biosynthetic process" evidence=IEA]
[GO:0008284 "positive regulation of cell proliferation"
evidence=IEA] [GO:0008732 "L-allo-threonine aldolase activity"
evidence=IEA] [GO:0016597 "amino acid binding" evidence=IEA]
[GO:0019264 "glycine biosynthetic process from serine"
evidence=IEA] [GO:0042802 "identical protein binding" evidence=IEA]
[GO:0051289 "protein homotetramerization" evidence=IEA] [GO:0035999
"tetrahydrofolate interconversion" evidence=IEA]
UniPathway:UPA00193 InterPro:IPR001085 InterPro:IPR015421
InterPro:IPR015422 InterPro:IPR019798 Pfam:PF00464 PROSITE:PS00096
GO:GO:0030170 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0005743 GO:GO:0005758
GO:GO:0005759 GO:GO:0008284 GO:GO:0016597 GO:GO:0051289
GO:GO:0035999 GO:GO:0006564 GO:GO:0008732 GO:GO:0004372
PANTHER:PTHR11680 GO:GO:0019264 EMBL:AC137834 HGNC:HGNC:10852
ChiTaRS:SHMT2 ProteinModelPortal:G3V2Y4 SMR:G3V2Y4
Ensembl:ENST00000555634 ArrayExpress:G3V2Y4 Bgee:G3V2Y4
Uniprot:G3V2Y4
Length = 234
Score = 459 (166.6 bits), Expect = 3.5e-42, P = 3.5e-42
Identities = 100/232 (43%), Positives = 141/232 (60%)
Query: 117 MGMSLQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLI 170
MG+ L +GGHLTHG M ++ + +F S+ Y LN K IDY ++ A+ +P+LI
Sbjct: 1 MGLDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLI 60
Query: 171 IAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKS 230
IAG SAY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+
Sbjct: 61 IAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKT 120
Query: 231 LRGPRGGFILMKKKYKKI---------------INSAVFPGIQGGPLMHVIAAKAVAFKE 275
LRG R G I +K K + IN AVFP +QGGP H IAA AVA K+
Sbjct: 121 LRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQ 180
Query: 276 VLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327
P F+ Y QV+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G
Sbjct: 181 ACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDG 232
>UNIPROTKB|G3V5L0 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA] [GO:0006564 "L-serine
biosynthetic process" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0008732
"L-allo-threonine aldolase activity" evidence=IEA] [GO:0016597
"amino acid binding" evidence=IEA] [GO:0019264 "glycine
biosynthetic process from serine" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0051289 "protein
homotetramerization" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR001085 InterPro:IPR015421 Pfam:PF00464 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0005743 GO:GO:0005758 GO:GO:0005759
GO:GO:0008284 GO:GO:0016597 GO:GO:0051289 GO:GO:0006564
GO:GO:0008732 GO:GO:0004372 PANTHER:PTHR11680 GO:GO:0019264
EMBL:AC137834 HGNC:HGNC:10852 ChiTaRS:SHMT2
ProteinModelPortal:G3V5L0 SMR:G3V5L0 Ensembl:ENST00000554975
ArrayExpress:G3V5L0 Bgee:G3V5L0 Uniprot:G3V5L0
Length = 215
Score = 441 (160.3 bits), Expect = 2.9e-40, P = 2.9e-40
Identities = 92/190 (48%), Positives = 128/190 (67%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+ L
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 145
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLIIAGAS 175
+GGHLTHG M ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG S
Sbjct: 146 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAGTS 205
Query: 176 AYSQYIDFER 185
AY++ ID+ R
Sbjct: 206 AYARLIDYAR 215
>TAIR|locus:2065299 [details] [associations]
symbol:STI "STICHEL" species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0009360 "DNA
polymerase III complex" evidence=IEA] [GO:0010026 "trichome
differentiation" evidence=IMP] [GO:0010091 "trichome branching"
evidence=IMP] [GO:0005886 "plasma membrane" evidence=IDA]
[GO:0000278 "mitotic cell cycle" evidence=RCA] [GO:0003002
"regionalization" evidence=RCA] [GO:0007155 "cell adhesion"
evidence=RCA] [GO:0009887 "organ morphogenesis" evidence=RCA]
[GO:0009888 "tissue development" evidence=RCA] [GO:0010014
"meristem initiation" evidence=RCA] [GO:0010090 "trichome
morphogenesis" evidence=RCA] [GO:0010228 "vegetative to
reproductive phase transition of meristem" evidence=RCA]
[GO:0010638 "positive regulation of organelle organization"
evidence=RCA] [GO:0016049 "cell growth" evidence=RCA] [GO:0016926
"protein desumoylation" evidence=RCA] [GO:0033043 "regulation of
organelle organization" evidence=RCA] [GO:0033044 "regulation of
chromosome organization" evidence=RCA] [GO:0045010 "actin
nucleation" evidence=RCA] [GO:0045595 "regulation of cell
differentiation" evidence=RCA] [GO:0048449 "floral organ formation"
evidence=RCA] [GO:0048589 "developmental growth" evidence=RCA]
[GO:0048765 "root hair cell differentiation" evidence=RCA]
[GO:0050665 "hydrogen peroxide biosynthetic process" evidence=RCA]
[GO:0071555 "cell wall organization" evidence=RCA]
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 GO:GO:0005886 GO:GO:0005524 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0006260 GO:GO:0010091
EMBL:AC004136 GO:GO:0003887 GO:GO:0009360 eggNOG:COG2812
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:AF264023 IPI:IPI00542444
PIR:T00615 RefSeq:NP_565285.1 UniGene:At.19529 HSSP:P06710
ProteinModelPortal:O64728 SMR:O64728 STRING:O64728 PaxDb:O64728
PRIDE:O64728 EnsemblPlants:AT2G02480.1 GeneID:814777
KEGG:ath:AT2G02480 TAIR:At2g02480 HOGENOM:HOG000244020
InParanoid:O64728 OMA:CHSKTLR PhylomeDB:O64728
ProtClustDB:CLSN2687935 ArrayExpress:O64728 Genevestigator:O64728
Uniprot:O64728
Length = 1218
Score = 432 (157.1 bits), Expect = 1.7e-36, P = 1.7e-36
Identities = 109/357 (30%), Positives = 189/357 (52%)
Query: 382 ARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
++KYRP F LIGQ+ + +SL+NA+ + R+ YLF G RG GKT+ +RI + LNC+
Sbjct: 452 SQKYRPMFFEELIGQSIVVQSLMNAVKRSRIAPVYLFQGPRGTGKTSTARIFSAALNCVA 511
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQ--TIYAPINAR 499
+ +PCG C C +G D+ E+D A+ +G +++ LL+ TI ++
Sbjct: 512 TE-----EMKPCGYCKECNDFMSGKSKDFWELDGANKKGADKVRYLLKNLPTILPRNSSM 566
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
YK++VIDE H+L + + LK LE P + + FI TT+ + +P T+ SRC +F K+
Sbjct: 567 YKVFVIDECHLLPSKTWLSFLKFLENPLQKVVFIFITTDLENVPRTIQSRCQKFLFDKLK 626
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
DIV L I + EN+ + AL+LIA A GS+RDA ++ +Q ++ ++IT + E
Sbjct: 627 DSDIVVRLKKIASDENLDVDLHALDLIAMNADGSLRDAETMLEQ-LSLLGKRITTALVNE 685
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYS-IVLKDXXXXXXXXXXXXXX 678
++ ++ + L+++L+ D + A E+ +L IVL
Sbjct: 686 LVGVVSDEKLLELLELALSSDTAETVKRAR--ELLDLGADPIVLMSQLASLIMDIIAGTY 743
Query: 679 PEILIKDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRM 735
+ K S + + L++ ++E ++ ++ +L ++ D FT TLL++
Sbjct: 744 KVVDEKYSNAFFDGRNLTEA-DMEGLKHALKLLSEAEKQLRVSNDRSTWFTATLLQL 799
>TAIR|locus:2012497 [details] [associations]
symbol:AT1G14460 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IDA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 EMBL:CP002684
GO:GO:0005886 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019
TIGRFAMs:TIGR02397 IPI:IPI00525486 RefSeq:NP_172898.2
UniGene:At.43554 UniGene:At.69297 ProteinModelPortal:F4HW65
SMR:F4HW65 PRIDE:F4HW65 EnsemblPlants:AT1G14460.1 GeneID:838008
KEGG:ath:AT1G14460 OMA:REVIAYK Uniprot:F4HW65
Length = 1116
Score = 438 (159.2 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 110/358 (30%), Positives = 192/358 (53%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
L++KY+P F+ LIGQ+ + +SL+NA+ K R+ H YLF G RG GKT+ +RIL+ LNC
Sbjct: 424 LSQKYKPMFFDELIGQSIVVQSLMNAVKKGRVAHVYLFQGPRGTGKTSTARILSAALNCD 483
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI-YAPINA- 498
+ +PCG C C G D +E+DA G ++ LL++ + AP ++
Sbjct: 484 VVTEE----MKPCGYCKECSDYMLGKSRDLLELDAGKKNGAEKVRYLLKKLLTLAPQSSQ 539
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
RYK++VIDE H+L + ++LK LE P + F+ TT+ +P T+ SRC ++ K+
Sbjct: 540 RYKVFVIDECHLLPSRTWLSLLKFLENPLQKFVFVCITTDLDNVPRTIQSRCQKYIFNKV 599
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
DIV L I + EN+ E+ AL+LIA A GS+RDA ++ +Q ++ ++IT++ +
Sbjct: 600 RDGDIVVRLRKIASDENLDVESQALDLIALNADGSLRDAETMLEQ-LSLMGKRITVDLVN 658
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDXXXXXXXXXXXXXX 678
E++ ++ L+++L+ D + A E+ +L +L
Sbjct: 659 ELVGVVSDDKLLELLELALSSDTAETVKKAR--ELLDLGADPILMMSQLASLIMDIIAGA 716
Query: 679 PEILI-KDSPNYNEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRM 735
+ L K S + + L++ ++E+++ ++ +L ++ D F TLL++
Sbjct: 717 YKALDEKYSEAFLDRRNLTEA-DLERLKHALKLLSEAEKQLRVSTDRSTWFIATLLQL 773
Score = 38 (18.4 bits), Expect = 1.7e-35, Sum P(2) = 1.7e-35
Identities = 7/14 (50%), Positives = 11/14 (78%)
Query: 889 AKRLKELQLSHGRL 902
+K LK+L +HG+L
Sbjct: 883 SKTLKQLLYAHGKL 896
>TAIR|locus:2121934 [details] [associations]
symbol:AT4G24790 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0009360 "DNA polymerase III complex"
evidence=IEA] InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 GO:GO:0005524 EMBL:CP002687
GO:GO:0003677 GO:GO:0006260 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 IPI:IPI00532502
RefSeq:NP_001119046.1 RefSeq:NP_194210.2 UniGene:At.54505
ProteinModelPortal:F4JRP8 SMR:F4JRP8 PRIDE:F4JRP8
EnsemblPlants:AT4G24790.1 EnsemblPlants:AT4G24790.2 GeneID:828581
KEGG:ath:AT4G24790 OMA:TWLTVAL Uniprot:F4JRP8
Length = 857
Score = 405 (147.6 bits), Expect = 6.3e-34, P = 6.3e-34
Identities = 90/299 (30%), Positives = 164/299 (54%)
Query: 348 NDPEKPYFTSGIRLGSSAITTRGFSELEIIKVVLARKYRPSNFNTLIGQNHISKSLINAL 407
+D E+ G G S + T E++ L++K+RP +F+ L+GQ + K L++ +
Sbjct: 211 SDVEEYPLLPGNGNGESDVVTPSH---EVLSRSLSQKFRPKSFDELVGQEVVVKCLLSTI 267
Query: 408 DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467
+ R+ YLF G RG GKT+ S+I A LNC+ + S+PCG CS C +G
Sbjct: 268 LRGRITSVYLFHGPRGTGKTSTSKIFAAALNCLSQAAH----SRPCGLCSECKSYFSGRG 323
Query: 468 MDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP 527
D +E D+ + + L++ P+++R+K+++IDE +L + +L +L+
Sbjct: 324 RDVMETDSGKLNRPSYLRSLIKSASLPPVSSRFKVFIIDECQLLCQETWGTLLNSLDNFS 383
Query: 528 KYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587
++ FIL T+E +K+P VLSR +++ K+ DI L I +E I F+ A++ IA
Sbjct: 384 QHSVFILVTSELEKLPRNVLSRSQKYHFSKVCDADISTKLAKICIEEGIDFDQGAVDFIA 443
Query: 588 TGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILD-ALAEQDGNLIL 645
+ + GS+RDA + DQ ++ ++IT + +++ ++ L+ +LD A++ N ++
Sbjct: 444 SKSDGSLRDAEIMLDQ-LSLLGKRITTSLAYKLIGVVSDDELLDLLDLAMSSDTSNTVI 501
>UNIPROTKB|G3V4W5 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0006544
"glycine metabolic process" evidence=IEA] [GO:0006563 "L-serine
metabolic process" evidence=IEA] [GO:0030170 "pyridoxal phosphate
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR001085 InterPro:IPR015421 Pfam:PF00464 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0006544 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 EMBL:AC137834 HGNC:HGNC:10852 ChiTaRS:SHMT2
ProteinModelPortal:G3V4W5 SMR:G3V4W5 Ensembl:ENST00000556689
ArrayExpress:G3V4W5 Bgee:G3V4W5 Uniprot:G3V4W5
Length = 237
Score = 367 (134.2 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 75/157 (47%), Positives = 106/157 (67%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 47 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+ L
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 166
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEKI 153
+GGHLTHG M ++ + +F S+ Y LN +++
Sbjct: 167 PDGGHLTHGYMSDVKRISATSIFFESMPYKLNVCDEV 203
>UNIPROTKB|G3V540 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0006544
"glycine metabolic process" evidence=IEA] [GO:0006563 "L-serine
metabolic process" evidence=IEA] [GO:0030170 "pyridoxal phosphate
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR001085 InterPro:IPR015421 Pfam:PF00464 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0006544 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 EMBL:AC137834 HGNC:HGNC:10852 ChiTaRS:SHMT2
SMR:G3V540 Ensembl:ENST00000553837 Ensembl:ENST00000554604
Uniprot:G3V540
Length = 192
Score = 366 (133.9 bits), Expect = 3.0e-32, P = 3.0e-32
Identities = 75/152 (49%), Positives = 103/152 (67%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+ L
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 145
Query: 122 QEGGHLTHGMM-----LNMSGKWFNSICYGLN 148
+GGHLTHG M ++ + +F S+ Y LN
Sbjct: 146 PDGGHLTHGYMSDVKRISATSIFFESMPYKLN 177
>UNIPROTKB|G3V2W0 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA] [GO:0006564 "L-serine
biosynthetic process" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0008732
"L-allo-threonine aldolase activity" evidence=IEA] [GO:0016597
"amino acid binding" evidence=IEA] [GO:0019264 "glycine
biosynthetic process from serine" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0051289 "protein
homotetramerization" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR001085 InterPro:IPR015421 Pfam:PF00464 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0005743 GO:GO:0005758 GO:GO:0005759
GO:GO:0008284 GO:GO:0016597 GO:GO:0051289 GO:GO:0006564
GO:GO:0008732 GO:GO:0004372 PANTHER:PTHR11680 GO:GO:0019264
EMBL:AC137834 HGNC:HGNC:10852 ChiTaRS:SHMT2
ProteinModelPortal:G3V2W0 SMR:G3V2W0 Ensembl:ENST00000554310
ArrayExpress:G3V2W0 Bgee:G3V2W0 Uniprot:G3V2W0
Length = 160
Score = 359 (131.4 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 70/131 (53%), Positives = 93/131 (70%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+ L
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 145
Query: 122 QEGGHLTHGMM 132
+GGHLTHG M
Sbjct: 146 PDGGHLTHGYM 156
>UNIPROTKB|G3V4X0 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA] [GO:0006564 "L-serine
biosynthetic process" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0008732
"L-allo-threonine aldolase activity" evidence=IEA] [GO:0016597
"amino acid binding" evidence=IEA] [GO:0019264 "glycine
biosynthetic process from serine" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0051289 "protein
homotetramerization" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR001085 InterPro:IPR015421 Pfam:PF00464 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0005743 GO:GO:0005758 GO:GO:0005759
GO:GO:0008284 GO:GO:0016597 GO:GO:0051289 GO:GO:0006564
GO:GO:0008732 GO:GO:0004372 PANTHER:PTHR11680 GO:GO:0019264
EMBL:AC137834 HGNC:HGNC:10852 ChiTaRS:SHMT2
ProteinModelPortal:G3V4X0 SMR:G3V4X0 Ensembl:ENST00000557427
ArrayExpress:G3V4X0 Bgee:G3V4X0 Uniprot:G3V4X0
Length = 159
Score = 359 (131.4 bits), Expect = 1.7e-31, P = 1.7e-31
Identities = 70/131 (53%), Positives = 93/131 (70%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+ L
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 145
Query: 122 QEGGHLTHGMM 132
+GGHLTHG M
Sbjct: 146 PDGGHLTHGYM 156
>UNIPROTKB|E7DN81 [details] [associations]
symbol:E7DN81 "DnaX DNA polymerase III clamp loader complex
gamma-tau-delta subunit" species:59241 "Streptococcus phage Dp-1"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR003593
InterPro:IPR008921 InterPro:IPR012763 InterPro:IPR022754
Pfam:PF12169 SMART:SM00382 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 GO:GO:0003887 GO:GO:0009360
SUPFAM:SSF48019 TIGRFAMs:TIGR02397 EMBL:HQ268735
RefSeq:YP_004306905.1 IntAct:E7DN81 GeneID:10358613 Uniprot:E7DN81
Length = 341
Score = 353 (129.3 bits), Expect = 7.2e-31, P = 7.2e-31
Identities = 73/199 (36%), Positives = 119/199 (59%)
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYI 530
IE+DAAS G+ + ++E + Y +++ +K+Y+IDEVHML+ AFNA+LKTLEEP
Sbjct: 67 IEIDAASNNGVENVRNIIEDSRYKSMDSEFKVYIIDEVHMLSTGAFNALLKTLEEPSSGT 126
Query: 531 KFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKEN-----IKFETSALNL 585
FIL TT+PQKIP T+LSR +F+ ++ + DIVN L +I+ EN +E AL+
Sbjct: 127 VFILCTTDPQKIPDTILSRVQRFDFTRIDNDDIVNQLQFIIESENEEGAGYSYERDALSF 186
Query: 586 IATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLIL 645
I A G MRD+++ ++ ++YS + + ++ L + D + +++A+A DG+ L
Sbjct: 187 IGKLANGGMRDSITRLEKVLDYSHH-VDMEAVSNALGVPDYETFASLVEAIANYDGSKCL 245
Query: 646 SIANKIEIYNLSYSIVLKD 664
I N +V ++
Sbjct: 246 EIVNDFHYSGKDLKLVTRN 264
Score = 140 (54.3 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 42/120 (35%), Positives = 61/120 (50%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC- 439
LA KYRP F ++ Q ++ + L+N L + H YLF G G GKTT +RI AK +N
Sbjct: 3 LASKYRPQTFEEVVAQEYVKEILLNQLQNGAIKHGYLFCGGAGTGKTTTARIFAKDVNKG 62
Query: 440 ----IGIDG--NGGITS-QPCGKCSVCVKIDNGCFMDYI--EMDAASTRGINEMAQLLEQ 490
I ID N G+ + + + S +D+ F YI E+ ST N + + LE+
Sbjct: 63 LGSPIEIDAASNNGVENVRNIIEDSRYKSMDSE-FKVYIIDEVHMLSTGAFNALLKTLEE 121
>TAIR|locus:2172013 [details] [associations]
symbol:AT5G45720 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005739 "mitochondrion"
evidence=ISM] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 InterPro:IPR012763
InterPro:IPR022754 Pfam:PF12169 SMART:SM00382 GO:GO:0005524
EMBL:CP002688 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 TIGRFAMs:TIGR02397
IPI:IPI00536419 RefSeq:NP_199384.2 UniGene:At.51078
UniGene:At.70630 ProteinModelPortal:F4KEM0 SMR:F4KEM0 PRIDE:F4KEM0
EnsemblPlants:AT5G45720.1 GeneID:834611 KEGG:ath:AT5G45720
OMA:ESGRSEI Uniprot:F4KEM0
Length = 966
Score = 352 (129.0 bits), Expect = 4.5e-28, P = 4.5e-28
Identities = 80/266 (30%), Positives = 145/266 (54%)
Query: 383 RKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGI 442
+KY P F L+GQN + ++L NA+ K+R+ Y+F G G GKT+ +R+ A+ LNC
Sbjct: 347 QKYAPRTFRDLLGQNLVVQALSNAIAKRRVGLLYVFHGPNGTGKTSCARVFARALNCHST 406
Query: 443 DGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKI 502
+ S+PCG CS CV D+G EM + + LL++T + +
Sbjct: 407 E-----QSKPCGVCSSCVSYDDGKNRYIREMGPVKSF---DFENLLDKTNIRQQQKQQLV 458
Query: 503 YVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHD 562
+ D+ ++ +N + K ++ P+ + F+L + +P ++SRC +F K+ D
Sbjct: 459 LIFDDCDTMSTDCWNTLSKIVDRAPRRVVFVLVCSSLDVLPHIIVSRCQKFFFPKLKDVD 518
Query: 563 IVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLS 622
I+++L I +KE I + AL L+A+ + GS+RDA +T + ++ +I++ +QEM+
Sbjct: 519 IIDSLQLIASKEEIDIDKDALKLVASRSDGSLRDA-EMTLEQLSLLGTRISVPLVQEMVG 577
Query: 623 IIDQKYLIQILD-ALAEQDGNLILSI 647
+I + L+ +LD AL+ N + ++
Sbjct: 578 LISDEKLVDLLDLALSADTVNTVKNL 603
>UNIPROTKB|G3V2E4 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0006544
"glycine metabolic process" evidence=IEA] [GO:0006563 "L-serine
metabolic process" evidence=IEA] [GO:0030170 "pyridoxal phosphate
binding" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR001085 InterPro:IPR015421 Pfam:PF00464 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0006544 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 EMBL:AC137834 HGNC:HGNC:10852 ChiTaRS:SHMT2
ProteinModelPortal:G3V2E4 SMR:G3V2E4 Ensembl:ENST00000557433
ArrayExpress:G3V2E4 Bgee:G3V2E4 Uniprot:G3V2E4
Length = 171
Score = 324 (119.1 bits), Expect = 9.0e-28, P = 9.0e-28
Identities = 64/124 (51%), Positives = 87/124 (70%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 47 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 106
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+ L
Sbjct: 107 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 166
Query: 122 QEGG 125
+GG
Sbjct: 167 PDGG 170
>UNIPROTKB|G3V4T0 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA] [GO:0006564 "L-serine
biosynthetic process" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0008732
"L-allo-threonine aldolase activity" evidence=IEA] [GO:0016597
"amino acid binding" evidence=IEA] [GO:0019264 "glycine
biosynthetic process from serine" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0051289 "protein
homotetramerization" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR001085 InterPro:IPR015421 Pfam:PF00464 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0005743 GO:GO:0005758 GO:GO:0005759
GO:GO:0008284 GO:GO:0016597 GO:GO:0051289 GO:GO:0006564
GO:GO:0008732 GO:GO:0004372 PANTHER:PTHR11680 GO:GO:0019264
EMBL:AC137834 HGNC:HGNC:10852 ChiTaRS:SHMT2
ProteinModelPortal:G3V4T0 SMR:G3V4T0 Ensembl:ENST00000555773
ArrayExpress:G3V4T0 Bgee:G3V4T0 Uniprot:G3V4T0
Length = 149
Score = 324 (119.1 bits), Expect = 9.0e-28, P = 9.0e-28
Identities = 64/124 (51%), Positives = 87/124 (70%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+ L
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 145
Query: 122 QEGG 125
+GG
Sbjct: 146 PDGG 149
>UNIPROTKB|J3KRZ5 [details] [associations]
symbol:SHMT1 "Serine hydroxymethyltransferase, cytosolic"
species:9606 "Homo sapiens" [GO:0030170 "pyridoxal phosphate
binding" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0008732 "L-allo-threonine aldolase activity" evidence=IEA]
[GO:0016597 "amino acid binding" evidence=IEA] [GO:0019264 "glycine
biosynthetic process from serine" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0051289 "protein
homotetramerization" evidence=IEA] InterPro:IPR001085
InterPro:IPR015421 Pfam:PF00464 GO:GO:0030170 Gene3D:3.40.640.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0006544 EMBL:AC127537
GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680 HGNC:HGNC:10850
ChiTaRS:SHMT1 EMBL:AL353997 Ensembl:ENST00000582653 Uniprot:J3KRZ5
Length = 167
Score = 320 (117.7 bits), Expect = 2.4e-27, P = 2.4e-27
Identities = 64/129 (49%), Positives = 86/129 (66%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGG 67
L D +++ II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+RYYGG
Sbjct: 26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQRYYGG 85
Query: 68 CKFIDLIEKIAINRLKKIFNAE----AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
+FID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+ L +
Sbjct: 86 TEFIDELETLCQKRALQAYKLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLDLPD 145
Query: 124 GGHLTHGMM 132
GGHLTHG M
Sbjct: 146 GGHLTHGFM 154
>UNIPROTKB|G3V3Y8 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA] [GO:0006564 "L-serine
biosynthetic process" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0008732
"L-allo-threonine aldolase activity" evidence=IEA] [GO:0016597
"amino acid binding" evidence=IEA] [GO:0019264 "glycine
biosynthetic process from serine" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0051289 "protein
homotetramerization" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR001085 InterPro:IPR015421 Pfam:PF00464 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0005743 GO:GO:0005758 GO:GO:0005759
GO:GO:0008284 GO:GO:0016597 GO:GO:0051289 GO:GO:0006564
GO:GO:0008732 GO:GO:0004372 PANTHER:PTHR11680 GO:GO:0019264
EMBL:AC137834 HGNC:HGNC:10852 ChiTaRS:SHMT2 SMR:G3V3Y8
Ensembl:ENST00000553529 Ensembl:ENST00000556737 Uniprot:G3V3Y8
Length = 147
Score = 312 (114.9 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 62/122 (50%), Positives = 85/122 (69%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGMSL 121
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+ L
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGLDL 145
Query: 122 QE 123
+
Sbjct: 146 PD 147
>UNIPROTKB|G3V241 [details] [associations]
symbol:SHMT2 "Serine hydroxymethyltransferase,
mitochondrial" species:9606 "Homo sapiens" [GO:0030170 "pyridoxal
phosphate binding" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0005743
"mitochondrial inner membrane" evidence=IEA] [GO:0005758
"mitochondrial intermembrane space" evidence=IEA] [GO:0005759
"mitochondrial matrix" evidence=IEA] [GO:0006564 "L-serine
biosynthetic process" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0008732
"L-allo-threonine aldolase activity" evidence=IEA] [GO:0016597
"amino acid binding" evidence=IEA] [GO:0019264 "glycine
biosynthetic process from serine" evidence=IEA] [GO:0042802
"identical protein binding" evidence=IEA] [GO:0051289 "protein
homotetramerization" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0015630 "microtubule cytoskeleton" evidence=IDA]
InterPro:IPR001085 InterPro:IPR015421 Pfam:PF00464 GO:GO:0005739
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0015630 GO:GO:0005743 GO:GO:0005758 GO:GO:0005759
GO:GO:0008284 GO:GO:0016597 GO:GO:0051289 GO:GO:0006564
GO:GO:0008732 GO:GO:0004372 PANTHER:PTHR11680 GO:GO:0019264
EMBL:AC137834 HGNC:HGNC:10852 ChiTaRS:SHMT2
ProteinModelPortal:G3V241 SMR:G3V241 Ensembl:ENST00000557703
ArrayExpress:G3V241 Bgee:G3V241 Uniprot:G3V241
Length = 142
Score = 305 (112.4 bits), Expect = 9.5e-26, P = 9.5e-26
Identities = 61/117 (52%), Positives = 82/117 (70%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKRYY
Sbjct: 26 ESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKRYY 85
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMG 118
GG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG
Sbjct: 86 GGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMG 142
>TIGR_CMR|SPO_3529 [details] [associations]
symbol:SPO_3529 "serine hydroxymethyltransferase"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=ISS] [GO:0006545
"glycine biosynthetic process" evidence=ISS] [GO:0006730
"one-carbon metabolic process" evidence=ISS] InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR015422 Pfam:PF00464
PIRSF:PIRSF000412 GO:GO:0030170 Gene3D:3.40.640.10
Gene3D:3.90.1150.10 InterPro:IPR015424 SUPFAM:SSF53383
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008168 GO:GO:0006544
KO:K00600 GO:GO:0004372 GO:GO:0006563 PANTHER:PTHR11680
HOGENOM:HOG000239403 RefSeq:YP_168724.1 ProteinModelPortal:Q5LMN4
GeneID:3192992 KEGG:sil:SPO3529 PATRIC:23380529 OMA:ATMANLA
ProtClustDB:CLSK759294 Uniprot:Q5LMN4
Length = 431
Score = 293 (108.2 bits), Expect = 6.0e-23, P = 6.0e-23
Identities = 99/361 (27%), Positives = 168/361 (46%)
Query: 20 LKEKQRQNNNIELIASENYTSLAVMEAQGTL---LTNKYAEGYPGKRYYGGCKFIDLIEK 76
L E+ R ++ E T++ A+ L L ++ + GYPG +Y G + I+ IE
Sbjct: 31 LIEENRTIHDAECFNLNPATNVMNPRAEAVLARGLGSRPSLGYPGDKYEMGLEAIEEIEV 90
Query: 77 IAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMS 136
IA K+FNA A ++ SG+ AN F ++ PGDTI+ GGH+TH +
Sbjct: 91 IAAELAAKVFNARYAEIRVGSGALANLYGFMALTRPGDTIIAPPASIGGHVTHHKA-GCA 149
Query: 137 GKW-FNSICYGLNKKE-KIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNIN 194
G + +I ++ +D + LA++++P+LI G S IA +
Sbjct: 150 GLYGLKTIEAPVDADGYSLDLSALAELAERHRPRLITVGGSLNLFPHPVAAVREIADRVG 209
Query: 195 SYFMVDMAHYAGLIAAGEYPNPVPF-ADFITSTTHKSLRGPRGGFILMKK-KYKKIINSA 252
+ + D AH G+IA G + NP+ A +T +T+KSL GP GG I+ + + + +++
Sbjct: 210 AKVLFDAAHQCGIIAGGAWANPLDEGAHLMTMSTYKSLGGPAGGLIVTNEAEIAERLDAI 269
Query: 253 VFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI---VSG 309
FPG+ AA A++ + + Y + +V A+ L+ L+ G+ + G
Sbjct: 270 AFPGMTANFDAAKSAALAISLLDWVDHG-AAYAQAMVDLAQALAAELEALGLPVFHGAGG 328
Query: 310 GTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369
T SH V+ G+ A L A + +P P +G+R+G+ + R
Sbjct: 329 ATASHQFAVEAARFG-GGQAASKTLRRAGFLACGIGLPIAPVAGDM-NGLRIGTPELVRR 386
Query: 370 G 370
G
Sbjct: 387 G 387
>UNIPROTKB|I3LGT5 [details] [associations]
symbol:I3LGT5 "Serine hydroxymethyltransferase"
species:9823 "Sus scrofa" [GO:0035999 "tetrahydrofolate
interconversion" evidence=IEA] [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0030170
"pyridoxal phosphate binding" evidence=IEA] [GO:0006563 "L-serine
metabolic process" evidence=IEA] [GO:0006544 "glycine metabolic
process" evidence=IEA] UniPathway:UPA00193 InterPro:IPR001085
InterPro:IPR015421 InterPro:IPR019798 Pfam:PF00464 PROSITE:PS00096
GO:GO:0030170 Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383
GO:GO:0006544 GO:GO:0035999 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 GeneTree:ENSGT00390000002762 EMBL:FP565227
Ensembl:ENSSSCT00000028049 Uniprot:I3LGT5
Length = 161
Score = 278 (102.9 bits), Expect = 7.2e-23, P = 7.2e-23
Identities = 56/128 (43%), Positives = 82/128 (64%)
Query: 117 MGMSLQEGGHLTHGMM-----LNMSGKWFNSICYGLNKKEK-IDYKKVEYLAKKNKPKLI 170
MG+ L +GGHLTHG M ++ + +F S+ Y LN K IDY ++ A+ +P+LI
Sbjct: 1 MGLDLPDGGHLTHGYMTDVKRISATSIFFESMPYKLNPKTGLIDYDQLALTARLFRPRLI 60
Query: 171 IAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKS 230
IAG SAY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+
Sbjct: 61 IAGTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFEHADVVTTTTHKT 120
Query: 231 LRGPRGGF 238
LRG R GF
Sbjct: 121 LRGARSGF 128
>UNIPROTKB|H7C2S9 [details] [associations]
symbol:MTO1 "Protein MTO1 homolog, mitochondrial"
species:9606 "Homo sapiens" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR002218 Pfam:PF01134 GO:GO:0050660
GO:GO:0008033 EMBL:AL603910 HGNC:HGNC:19261 ChiTaRS:MTO1
ProteinModelPortal:H7C2S9 Ensembl:ENST00000445187 Bgee:H7C2S9
Uniprot:H7C2S9
Length = 98
Score = 251 (93.4 bits), Expect = 5.4e-20, P = 5.4e-20
Identities = 49/98 (50%), Positives = 68/98 (69%)
Query: 1004 EPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSL 1063
EPEG+ + YP G+S +LP E Q +++ I G++ A +I+PGY ++YDY +P + SL
Sbjct: 1 EPEGMDSDLIYPQGLSMTLPAELQEKMITCIRGLEKAKVIQPGYGVQYDYLDPRQITPSL 60
Query: 1064 ETKQIHGLFFAGQINGTTGYEEAASQG--LLAGLNAAL 1099
ET + LFFAGQINGTTGYEEAA+Q LL G +A +
Sbjct: 61 ETHLVQRLFFAGQINGTTGYEEAAAQSVALLPGWSAVI 98
>TIGR_CMR|DET_0535 [details] [associations]
symbol:DET_0535 "DNA polymerase III, delta prime subunit"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] EMBL:CP000027 GenomeReviews:CP000027_GR
eggNOG:COG0470 GO:GO:0003887 KO:K02341 RefSeq:YP_181279.1
ProteinModelPortal:Q3Z920 STRING:Q3Z920 GeneID:3230147
KEGG:det:DET0535 PATRIC:21608137 HOGENOM:HOG000192593 OMA:AFIKIDQ
ProtClustDB:CLSK935628 BioCyc:DETH243164:GJNF-535-MONOMER
Uniprot:Q3Z920
Length = 339
Score = 226 (84.6 bits), Expect = 8.0e-16, P = 8.0e-16
Identities = 58/175 (33%), Positives = 86/175 (49%)
Query: 393 LIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP 452
+IGQ+ L N+L++ +L HAY+F G GVGK ++ A+ LNC S P
Sbjct: 4 IIGQDKAVSFLCNSLNQDKLCHAYVFYGQSGVGKKRMALSFAQALNCQA-------ASPP 56
Query: 453 CGKCSVCVKIDNGCFMDYIEMDAASTR-----------GINEMAQLLEQTIYAPINARYK 501
C +C VC +I G F D I ++ S G+ ++ + P +YK
Sbjct: 57 CQECPVCERIMAGNFPDVIHIELLSAEDSSDGKAKAEIGVKQVEDIQHAASLPPFEGKYK 116
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK 556
+++I + L+ + N +LKTLEEP FIL T + + TVLSRC LK
Sbjct: 117 VFIIHQAEKLSVESSNRLLKTLEEPGSQNIFILLTADKSLLLPTVLSRCQILELK 171
>TIGR_CMR|BA_0028 [details] [associations]
symbol:BA_0028 "DNA polymerase III, delta prime subunit"
species:198094 "Bacillus anthracis str. Ames" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006260
GO:GO:0008408 GO:GO:0003887 KO:K02341 TIGRFAMs:TIGR00678
HOGENOM:HOG000192593 RefSeq:NP_842598.1 RefSeq:YP_016633.2
RefSeq:YP_026317.1 ProteinModelPortal:Q81W10 DNASU:1085794
EnsemblBacteria:EBBACT00000013310 EnsemblBacteria:EBBACT00000013749
EnsemblBacteria:EBBACT00000019869 GeneID:1085794 GeneID:2816307
GeneID:2852708 KEGG:ban:BA_0028 KEGG:bar:GBAA_0028 KEGG:bat:BAS0030
OMA:RIESGNH ProtClustDB:PRK08058 BioCyc:BANT260799:GJAJ-37-MONOMER
BioCyc:BANT261594:GJ7F-38-MONOMER Uniprot:Q81W10
Length = 327
Score = 207 (77.9 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 61/202 (30%), Positives = 99/202 (49%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
K L+N++ K+R+ HAYL G +G GK + +AK C N +PC C+ C
Sbjct: 17 KMLMNSIAKERISHAYLLEGEKGTGKFATAIQMAKSFLCS--QRN---RVEPCHVCTNCK 71
Query: 461 KIDNGCF--MDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNA 518
+ID+G + ++ D S + ++ L E+ + A K+Y+I+ +T +A NA
Sbjct: 72 RIDSGNHPNLHIVKPDGLSIKK-QQIHDLQEEFSKTGLEANKKVYIIEHADRMTANAANA 130
Query: 519 MLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKF 578
+LK LEEP IL T + +I T+LSRC + + ++ L E I
Sbjct: 131 LLKFLEEPSSDTTAILLTEQSHQILNTILSRCQVVTFRPLPTESLIRRL----QDEGI-- 184
Query: 579 ETSALNLIATGAQGSMRDALSL 600
T +L+ +A S +AL+L
Sbjct: 185 -TVSLSTLAAQLTNSFDEALTL 205
Score = 37 (18.1 bits), Expect = 4.8e-13, Sum P(2) = 4.8e-13
Identities = 21/98 (21%), Positives = 46/98 (46%)
Query: 1167 KQW-KIFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVN 1225
++W K F +K ++ + L L + + + GE +R++ + K + ++
Sbjct: 237 EKWGKHFGEKEQL-QQGLDMLLLIYKDLLYVQLGEEDRLVFREQKEMFE-----SFSYAQ 290
Query: 1226 YNTLTSLKGI-NGKNLYNTEIYQEDIKKQLKIQLQYEG 1262
+++L I KN N + + + +QL ++LQ EG
Sbjct: 291 KRIVSALFNILEAKNRINANVNAQLVFEQLVLRLQ-EG 327
>TIGR_CMR|GSU_2230 [details] [associations]
symbol:GSU_2230 "DNA polymerase III, delta prime subunit"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 HOGENOM:HOG000192593
OMA:AFIKIDQ RefSeq:NP_953279.1 ProteinModelPortal:Q74AW9
GeneID:2687562 KEGG:gsu:GSU2230 PATRIC:22027315
ProtClustDB:CLSK828770 BioCyc:GSUL243231:GH27-2186-MONOMER
Uniprot:Q74AW9
Length = 323
Score = 199 (75.1 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 67/217 (30%), Positives = 97/217 (44%)
Query: 390 FNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGIT 449
F+ ++GQ L AL + HAYLF G G GK T + + C DG
Sbjct: 3 FSRVLGQETAVNVLQRALRSGKTAHAYLFEGIEGCGKMTTALAFIEAAFCRRDDG----- 57
Query: 450 SQPCGKCSVCVKIDNGCFMDYIEMDAASTRG----INEMAQLLEQTIYAPINARYKIYVI 505
CG C C K+ + + ++ + G I+++ +L + P+ A K +I
Sbjct: 58 ---CGSCPSCRKMAG---LQHPDLHRLAPEGAFIKIDQVRELQRELSLRPVEAPMKACII 111
Query: 506 DEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVN 565
D+ L A NA+LKTLEEPP IL TT P I TV SRC Q L ++
Sbjct: 112 DDADRLNPAAANALLKTLEEPPGNALLILLTTNPAGILPTVRSRC-QLLRFSPLPERVIE 170
Query: 566 NLCYILNKENIKFETSALNLIATGAQGSMRDALSLTD 602
Y+ + E +A L A+ A GS+ AL + +
Sbjct: 171 E--YLTDAGR---EPAAARLAASLAGGSLSRALEMEE 202
>ZFIN|ZDB-GENE-050306-29 [details] [associations]
symbol:rfc2 "replication factor C (activator 1) 2"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-050306-29 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 SUPFAM:SSF48019 GeneTree:ENSGT00550000075050
Pfam:PF08542 EMBL:CR450711 IPI:IPI00505688
Ensembl:ENSDART00000122513 Bgee:F1R0T0 Uniprot:F1R0T0
Length = 384
Score = 178 (67.7 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 56/195 (28%), Positives = 96/195 (49%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A++ RGI N++ +Q + P R+KI ++DE +T A A+ +T+E
Sbjct: 133 LELNASNDRGIDVVRNKIKMFAQQKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIY 191
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F LA KI + SRC K+ I+ L ++ KEN+ L I
Sbjct: 192 SKTTRFALACNASDKIIEPIQSRCAVLRYSKLRDEQIMMRLTEVVEKENLHVTNDGLEAI 251
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILS 646
AQG MR AL+ Q+ N I NS + + + D+ + + ++ ++ E N +
Sbjct: 252 IFTAQGDMRQALNNL-QSTNSGFGYI--NS-ENVFKVCDEPHPL-LVKSMLEHCVNANID 306
Query: 647 IANKI--EIYNLSYS 659
A KI ++++L YS
Sbjct: 307 EAYKIIEQLWSLGYS 321
Score = 62 (26.9 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
KYRP N ++G N + S + ++ + G G GKTT LA+ L
Sbjct: 71 KYRPLKLNEIVG-NEETVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 123
Score = 42 (19.8 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 17/59 (28%), Positives = 25/59 (42%)
Query: 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTS-LAVMEAQGTLLTNKYAEGYPG 61
K+E K +E+ EK R E++ +E S L V +G + N G PG
Sbjct: 52 KDETAPKPTTTAYELPWVEKYRPLKLNEIVGNEETVSRLEVFAREGNV-PNIIIAGPPG 109
>UNIPROTKB|H0YC00 [details] [associations]
symbol:MTO1 "Protein MTO1 homolog, mitochondrial"
species:9606 "Homo sapiens" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR002218 Pfam:PF01134 GO:GO:0050660
GO:GO:0008033 EMBL:AL603910 HGNC:HGNC:19261 ChiTaRS:MTO1
Ensembl:ENST00000524046 Uniprot:H0YC00
Length = 86
Score = 171 (65.3 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 31/51 (60%), Positives = 39/51 (76%)
Query: 1041 NIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGL 1091
N+ PGY ++YDY +P + SLET + LFFAGQINGTTGYEEAA+QG+
Sbjct: 20 NLPLPGYGVQYDYLDPRQITPSLETHLVQRLFFAGQINGTTGYEEAAAQGI 70
>GENEDB_PFALCIPARUM|PFB0840w [details] [associations]
symbol:PFB0840w "replication factor C, subunit
2" species:5833 "Plasmodium falciparum" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 182 (69.1 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 67/261 (25%), Positives = 117/261 (44%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++ QN+ L + K + H +F G G GKT+ LA L
Sbjct: 9 KYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHL-IFHGPPGTGKTSAINALAHELF----- 62
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIY 503
G I+ + + D G + ++ A + I++ ++ +T + +K+
Sbjct: 63 GKENISERVL---ELNASDDRGINVVREKIKAYTRISISKN-KIHSET--KEVLPSWKLV 116
Query: 504 VIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI 563
V+DE M+T A +A+ + +E +FIL KI + SRC + + + +
Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIK 176
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSI 623
L YI ENI AL I +G +R A+S+ Q + + KITLNS+ ++ +
Sbjct: 177 KEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSIL-QLCSCINTKITLNSVLDVSGL 235
Query: 624 IDQKYLIQILDALAEQDGNLI 644
+ +I+DA +D L+
Sbjct: 236 PSDNIVYKIIDACKMKDLKLV 256
Score = 46 (21.3 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1233 KGINGKNLYNTEIYQEDIKKQLKIQLQYEGYIL 1265
K N + NTE Y++ +K Q+ ++L Y L
Sbjct: 275 KSFNNYFVTNTE-YEDSLKYQILLELSRHDYRL 306
>UNIPROTKB|O96260 [details] [associations]
symbol:PFB0840w "Replication factor C, subunit 2"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 EMBL:AE001362 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 HOGENOM:HOG000224154 HSSP:Q8U4J3
PIR:H71604 RefSeq:XP_001349685.1 ProteinModelPortal:O96260
PRIDE:O96260 EnsemblProtists:PFB0840w:mRNA GeneID:812767
KEGG:pfa:PFB0840w EuPathDB:PlasmoDB:PF3D7_0218000 OMA:DPIFSRC
ProtClustDB:CLSZ2432483 Uniprot:O96260
Length = 330
Score = 182 (69.1 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 67/261 (25%), Positives = 117/261 (44%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++ QN+ L + K + H +F G G GKT+ LA L
Sbjct: 9 KYRPKRLDDIVHQNNAVMMLKEVVRTKNMPHL-IFHGPPGTGKTSAINALAHELF----- 62
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIY 503
G I+ + + D G + ++ A + I++ ++ +T + +K+
Sbjct: 63 GKENISERVL---ELNASDDRGINVVREKIKAYTRISISKN-KIHSET--KEVLPSWKLV 116
Query: 504 VIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI 563
V+DE M+T A +A+ + +E +FIL KI + SRC + + + +
Sbjct: 117 VLDEADMMTEDAQSALRRIIEIYSNVTRFILICNYIHKISDPIFSRCSCYRFQSIPINIK 176
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSI 623
L YI ENI AL I +G +R A+S+ Q + + KITLNS+ ++ +
Sbjct: 177 KEKLLYICQNENIDIVDDALEKIIETTEGDLRRAVSIL-QLCSCINTKITLNSVLDVSGL 235
Query: 624 IDQKYLIQILDALAEQDGNLI 644
+ +I+DA +D L+
Sbjct: 236 PSDNIVYKIIDACKMKDLKLV 256
Score = 46 (21.3 bits), Expect = 7.3e-11, Sum P(2) = 7.3e-11
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1233 KGINGKNLYNTEIYQEDIKKQLKIQLQYEGYIL 1265
K N + NTE Y++ +K Q+ ++L Y L
Sbjct: 275 KSFNNYFVTNTE-YEDSLKYQILLELSRHDYRL 306
>RGD|621198 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA;ISO] [GO:0006260 "DNA replication"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:621198
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
GO:GO:0005663 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 OMA:IQCLARI
OrthoDB:EOG48WC2D Pfam:PF08542 HSSP:P40339 EMBL:BC082110
IPI:IPI00194781 RefSeq:NP_446238.1 UniGene:Rn.113319
ProteinModelPortal:Q641W4 SMR:Q641W4 STRING:Q641W4 PRIDE:Q641W4
Ensembl:ENSRNOT00000001989 GeneID:116468 KEGG:rno:116468
UCSC:RGD:621198 InParanoid:Q641W4 NextBio:619010
Genevestigator:Q641W4 Uniprot:Q641W4
Length = 349
Score = 167 (63.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 48/194 (24%), Positives = 91/194 (46%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A++ RGI N++ +Q + P R+KI ++DE +T A A+ +T+E
Sbjct: 98 LELNASNDRGIDVVRNKIKMFAQQKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIY 156
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F LA KI + SRC K+ +++ L ++ KE + + L I
Sbjct: 157 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLSRLMNVIEKEKVPYTDDGLEAI 216
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAE-QDGNLIL 645
AQG MR AL+ + +NS + + + D+ + + + + + D N+
Sbjct: 217 IFTAQGDMRQALNNLQSTFSGFGY---INS-ENVFKVCDEPHPLLVKEMIQHCVDANIDE 272
Query: 646 SIANKIEIYNLSYS 659
+ +++L YS
Sbjct: 273 AYKILAHLWHLGYS 286
Score = 62 (26.9 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
KYRP N ++G N + S + ++ + G G GKTT LA+ L
Sbjct: 36 KYRPVKLNEIVG-NEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 88
>UNIPROTKB|P35250 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006260 "DNA replication"
evidence=TAS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006283 "transcription-coupled nucleotide-excision repair"
evidence=TAS] [GO:0006289 "nucleotide-excision repair"
evidence=TAS] [GO:0006297 "nucleotide-excision repair, DNA gap
filling" evidence=TAS] [GO:0032201 "telomere maintenance via
semi-conservative replication" evidence=TAS] [GO:0005515 "protein
binding" evidence=IPI] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 Reactome:REACT_115566
GO:GO:0005654 GO:GO:0003677 GO:GO:0017111 GO:GO:0000084 KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722 EMBL:CH471200
Orphanet:904 Reactome:REACT_383 GO:GO:0006283 GO:GO:0006271
GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019 GO:GO:0005663
EMBL:AF045555 EMBL:AC005081 CTD:5982 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI Pfam:PF08542 EMBL:M87338
EMBL:AF483622 EMBL:AB451243 EMBL:BC002813 IPI:IPI00017412
IPI:IPI00218280 PIR:A42700 RefSeq:NP_002905.2 RefSeq:NP_852136.1
UniGene:Hs.647062 ProteinModelPortal:P35250 SMR:P35250
DIP:DIP-34367N IntAct:P35250 STRING:P35250 PhosphoSite:P35250
DMDM:2507300 PaxDb:P35250 PeptideAtlas:P35250 PRIDE:P35250
DNASU:5982 Ensembl:ENST00000055077 Ensembl:ENST00000352131
Ensembl:ENST00000573234 Ensembl:ENST00000576908 GeneID:5982
KEGG:hsa:5982 UCSC:uc003uaj.3 GeneCards:GC07M073645 HGNC:HGNC:9970
HPA:HPA029493 MIM:194050 MIM:600404 neXtProt:NX_P35250
PharmGKB:PA34339 InParanoid:P35250 PhylomeDB:P35250 ChiTaRS:RFC2
GenomeRNAi:5982 NextBio:23285 ArrayExpress:P35250 Bgee:P35250
CleanEx:HS_RFC2 Genevestigator:P35250 GermOnline:ENSG00000049541
Uniprot:P35250
Length = 354
Score = 167 (63.8 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 52/195 (26%), Positives = 93/195 (47%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A++ RGI N++ +Q + P R+KI ++DE +T A A+ +T+E
Sbjct: 103 LELNASNDRGIDVVRNKIKMFAQQKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIY 161
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F LA KI + SRC K+ I+ L ++ KE + + L I
Sbjct: 162 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILTRLMNVIEKERVPYTDDGLEAI 221
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILS 646
AQG MR AL+ +S +NS + + + D+ + + + + + + N +
Sbjct: 222 IFTAQGDMRQALNNLQST--FSGFGF-INS-ENVFKVCDEPHPLLVKEMI-QHCVNANID 276
Query: 647 IANKI--EIYNLSYS 659
A KI +++L YS
Sbjct: 277 EAYKILAHLWHLGYS 291
Score = 62 (26.9 bits), Expect = 1.4e-10, Sum P(2) = 1.4e-10
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
KYRP N ++G N + S + ++ + G G GKTT LA+ L
Sbjct: 41 KYRPVKLNEIVG-NEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 93
>MGI|MGI:1341868 [details] [associations]
symbol:Rfc2 "replication factor C (activator 1) 2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1341868
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260
GO:GO:0017111 KO:K10755 eggNOG:COG0470 EMBL:AF289664
SUPFAM:SSF48019 GO:GO:0005663 EMBL:AF139987 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
ChiTaRS:RFC2 EMBL:AK075997 EMBL:BC023028 IPI:IPI00124744
RefSeq:NP_064406.1 UniGene:Mm.332739 ProteinModelPortal:Q9WUK4
SMR:Q9WUK4 STRING:Q9WUK4 PhosphoSite:Q9WUK4 PaxDb:Q9WUK4
PRIDE:Q9WUK4 Ensembl:ENSMUST00000023867 GeneID:19718 KEGG:mmu:19718
InParanoid:Q9WUK4 NextBio:297116 Bgee:Q9WUK4 CleanEx:MM_RFC2
Genevestigator:Q9WUK4 GermOnline:ENSMUSG00000023104 Uniprot:Q9WUK4
Length = 349
Score = 166 (63.5 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 48/194 (24%), Positives = 90/194 (46%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A++ RGI N++ +Q + P R+KI ++DE +T A A+ +T+E
Sbjct: 98 LELNASNDRGIDVVRNKIKMFAQQKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIY 156
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F LA KI + SRC K+ ++ L ++ KE + + L I
Sbjct: 157 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQVLTRLMNVIEKEKVPYTDDGLEAI 216
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAE-QDGNLIL 645
AQG MR AL+ + +NS + + + D+ + + + + + D N+
Sbjct: 217 IFTAQGDMRQALNNLQSTFSGFGY---INS-ENVFKVCDEPHPLLVKEMIQHCVDANIDE 272
Query: 646 SIANKIEIYNLSYS 659
+ +++L YS
Sbjct: 273 AYKILAHLWHLGYS 286
Score = 62 (26.9 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
KYRP N ++G N + S + ++ + G G GKTT LA+ L
Sbjct: 36 KYRPLKLNEIVG-NEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 88
>UNIPROTKB|E2QSU1 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
Ensembl:ENSCAFT00000019010 Uniprot:E2QSU1
Length = 316
Score = 161 (61.7 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 50/195 (25%), Positives = 93/195 (47%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A++ RGI N++ +Q + P R+KI ++DE +T A A+ +T+E
Sbjct: 101 LELNASNDRGIDVVRNKIKMFAQQKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIY 159
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F LA KI + SRC K+ ++ L +L +E + + L +
Sbjct: 160 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAV 219
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILS 646
AQG MR AL+ +S +NS + + + D+ + + + + + + N +
Sbjct: 220 IFTAQGDMRQALNNVQST--FSGFGF-INS-ENVFKVCDEPHPLLVKEMI-QHCVNANID 274
Query: 647 IANKI--EIYNLSYS 659
A KI +++L YS
Sbjct: 275 EAYKILAHLWHLGYS 289
Score = 65 (27.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
KYRP N ++G N + S + K+ + G G GKTT LA+ L
Sbjct: 39 KYRPVKLNEIVG-NEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARAL 91
>UNIPROTKB|Q05B83 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9913
"Bos taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 EMBL:BC122635 IPI:IPI00704020
RefSeq:NP_001074372.1 UniGene:Bt.35362 ProteinModelPortal:Q05B83
SMR:Q05B83 STRING:Q05B83 PRIDE:Q05B83 Ensembl:ENSBTAT00000024740
GeneID:508652 KEGG:bta:508652 CTD:5982 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 HOVERGEN:HBG002053 InParanoid:Q05B83
OMA:IQCLARI OrthoDB:EOG48WC2D NextBio:20868620 ArrayExpress:Q05B83
Pfam:PF08542 Uniprot:Q05B83
Length = 352
Score = 166 (63.5 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 52/195 (26%), Positives = 94/195 (48%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A++ RGI N++ +Q + P R+KI ++DE +T A A+ +T+E
Sbjct: 101 LELNASNDRGIDVVRNKIKMFAQQKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIY 159
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F LA KI + SRC K+ I+ L ++ KE +++ L I
Sbjct: 160 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDMQILARLLSVIEKEKVQYTDDGLEAI 219
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILS 646
AQG MR AL+ YS +NS + + + D+ + + + + + + + +
Sbjct: 220 IFTAQGDMRQALNNLQST--YSGFGF-INS-ENVFKVCDEPHPLLVKEMI-QHCVSADID 274
Query: 647 IANKI--EIYNLSYS 659
A KI +++L YS
Sbjct: 275 EAYKILAHLWHLGYS 289
Score = 62 (26.9 bits), Expect = 1.7e-10, Sum P(2) = 1.7e-10
Identities = 17/54 (31%), Positives = 25/54 (46%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
KYRP N ++G N + S + ++ + G G GKTT LA+ L
Sbjct: 39 KYRPVKLNEIVG-NEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARAL 91
>UNIPROTKB|O06363 [details] [associations]
symbol:Rv3644c "Possible DNA polymerase" species:1773
"Mycobacterium tuberculosis" [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR003593 InterPro:IPR004622 SMART:SM00382 GO:GO:0005829
GenomeReviews:AL123456_GR GO:GO:0000166 EMBL:BX842583 GO:GO:0006260
GO:GO:0017111 GO:GO:0008408 GO:GO:0003887 KO:K02341
TIGRFAMs:TIGR00678 EMBL:AL123456 PIR:E70563 RefSeq:NP_218161.1
RefSeq:YP_006517131.1 HSSP:P28631 ProteinModelPortal:O06363
SMR:O06363 PRIDE:O06363 EnsemblBacteria:EBMYCT00000000905
GeneID:13317252 GeneID:885553 KEGG:mtu:Rv3644c KEGG:mtv:RVBD_3644c
PATRIC:18156710 TubercuList:Rv3644c HOGENOM:HOG000192594
OMA:AFKLRRI ProtClustDB:PRK07940 Uniprot:O06363
Length = 401
Score = 180 (68.4 bits), Expect = 3.1e-10, P = 3.1e-10
Identities = 45/141 (31%), Positives = 71/141 (50%)
Query: 414 HAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQP-CGKCSVCVKIDNGCFMDYIE 472
HA+L TG G G++ + A L C +GG +P CG+C C G D
Sbjct: 41 HAWLLTGPPGSGRSVAALCFAAALQCT----SGG---EPGCGRCRACTTTLAGTHADVRR 93
Query: 473 M-DAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIK 531
+ + G++EM +++ P ++I VI++ LT A NA+LK +EEPP
Sbjct: 94 VIPEGLSIGVDEMRAIVQIAARRPTTGHWQIVVIEDADRLTEGAANALLKVVEEPPPSTV 153
Query: 532 FILA--TTEPQKIPITVLSRC 550
F+L + +P+ I +T+ SRC
Sbjct: 154 FLLCAPSVDPEDIAVTLRSRC 174
>UNIPROTKB|P53033 [details] [associations]
symbol:RFC2 "Replication factor C subunit 2" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
[GO:0000724 "double-strand break repair via homologous
recombination" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS] [GO:0006302
"double-strand break repair" evidence=TAS] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005654 GO:GO:0003677
GO:GO:0006260 GO:GO:0000724 GO:GO:0017111 KO:K10755 eggNOG:COG0470
Reactome:REACT_115612 SUPFAM:SSF48019 GO:GO:0005663 CTD:5982
GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
HOVERGEN:HBG002053 OMA:IQCLARI OrthoDB:EOG48WC2D Pfam:PF08542
EMBL:U12438 IPI:IPI00586061 PIR:I50704 RefSeq:NP_990861.1
UniGene:Gga.883 ProteinModelPortal:P53033 SMR:P53033 STRING:P53033
Ensembl:ENSGALT00000001980 GeneID:396542 KEGG:gga:396542
InParanoid:P53033 NextBio:20816578 Uniprot:P53033
Length = 359
Score = 169 (64.5 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 54/195 (27%), Positives = 93/195 (47%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A++ RGI N++ +Q + P R+KI ++DE +T A A+ +T+E
Sbjct: 108 LELNASNDRGIDVVRNKIKMFAQQKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIY 166
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F LA KI + SRC K+ I+ L I+ KE++ + L I
Sbjct: 167 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDSQILARLLKIVEKEDVPYTDDGLEAI 226
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILS 646
AQG MR AL+ YS +NS + + + D+ + + + + + + N +
Sbjct: 227 IFTAQGDMRQALNNLQST--YSGFGF-INS-ENVFKVCDEPHPLLVKEMI-QHCINANID 281
Query: 647 IANKI--EIYNLSYS 659
A KI ++ L YS
Sbjct: 282 EAYKILAHLWRLGYS 296
Score = 56 (24.8 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 30/107 (28%), Positives = 47/107 (43%)
Query: 331 ESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVVLARKYRPSNF 390
E +LE ++ ++ + P EK T LGS+ + G EL ++ KYRP
Sbjct: 4 EEVLE---VVEDEKAGPAAAEKRGPTD--TLGSAPAAS-GHYELPWVE-----KYRPLKL 52
Query: 391 NTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
++G N + S + K+ + G G GKTT LA+ L
Sbjct: 53 CEVVG-NEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARAL 98
>UNIPROTKB|F6ULR2 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 OMA:IQCLARI
Pfam:PF08542 Ensembl:ENSCAFT00000019010 EMBL:AAEX03004231
EMBL:AAEX03004232 Uniprot:F6ULR2
Length = 364
Score = 161 (61.7 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 50/195 (25%), Positives = 93/195 (47%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A++ RGI N++ +Q + P R+KI ++DE +T A A+ +T+E
Sbjct: 113 LELNASNDRGIDVVRNKIKMFAQQKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIY 171
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F LA KI + SRC K+ ++ L +L +E + + L +
Sbjct: 172 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLSDAQVLARLLTVLEQEKVPYTDDGLEAV 231
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILS 646
AQG MR AL+ +S +NS + + + D+ + + + + + + N +
Sbjct: 232 IFTAQGDMRQALNNVQST--FSGFGF-INS-ENVFKVCDEPHPLLVKEMI-QHCVNANID 286
Query: 647 IANKI--EIYNLSYS 659
A KI +++L YS
Sbjct: 287 EAYKILAHLWHLGYS 301
Score = 65 (27.9 bits), Expect = 3.7e-10, Sum P(2) = 3.7e-10
Identities = 18/54 (33%), Positives = 25/54 (46%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
KYRP N ++G N + S + K+ + G G GKTT LA+ L
Sbjct: 51 KYRPVKLNEIVG-NEDTVSRLEVFAKEGNVPNIIIAGPPGTGKTTSILCLARAL 103
>DICTYBASE|DDB_G0282235 [details] [associations]
symbol:rfc5 "replication factor C subunit 5"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=ISS] [GO:0031391 "Elg1 RFC-like complex" evidence=ISS]
[GO:0031389 "Rad17 RFC-like complex" evidence=ISS] [GO:0016887
"ATPase activity" evidence=ISS] [GO:0006298 "mismatch repair"
evidence=ISS] [GO:0006272 "leading strand elongation" evidence=ISS]
[GO:0006200 "ATP catabolic process" evidence=ISS] [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
dictyBase:DDB_G0282235 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0003677 GO:GO:0016887 GO:GO:0006298
KO:K10756 EMBL:AAFI02000046 eggNOG:COG0470 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 RefSeq:XP_640301.1 HSSP:P38629
ProteinModelPortal:Q54ST4 STRING:Q54ST4 EnsemblProtists:DDB0232229
GeneID:8623477 KEGG:ddi:DDB_G0282235 OMA:ILACARQ Uniprot:Q54ST4
Length = 347
Score = 135 (52.6 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 36/143 (25%), Positives = 71/143 (49%)
Query: 471 IEMDAASTRGINEMAQLLE----QTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A+ RGI+ + + ++ + YK+ ++DE +T+ A A+ + +E+
Sbjct: 91 LELNASDDRGIDVVREQIKTFASSMFFFNTTVPYKLIILDEADSMTNIAQTALRRVIEKY 150
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F + KI + SRC +F + L I+ KEN+K ++ A+N +
Sbjct: 151 TKTTRFCIVCNYVIKIIPALQSRCTRFRFSPLPTPPTEIRLKEIIEKENVKVDSKAMNAV 210
Query: 587 ATGAQGSMRDALSLTDQAINYSS 609
G MR L++ Q+++ SS
Sbjct: 211 LELGCGDMRKCLNIL-QSVSMSS 232
Score = 91 (37.1 bits), Expect = 4.9e-10, Sum P(2) = 4.9e-10
Identities = 20/54 (37%), Positives = 30/54 (55%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
KYRP N + LI I++++ +D L H LF G G GKT+ + +A+ L
Sbjct: 29 KYRPKNLDDLIAHEDITQTITKLIDNNTLPHL-LFYGPPGTGKTSTIQAIARKL 81
Score = 42 (19.8 bits), Expect = 5.3e-05, Sum P(2) = 5.3e-05
Identities = 17/58 (29%), Positives = 25/58 (43%)
Query: 5 NENLSKIDPKIWEII-LKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPG 61
N+ + I+ K +E + EK R N +LIA E+ T L + G PG
Sbjct: 10 NKFKTDIERKQFESLPWVEKYRPKNLDDLIAHEDITQTITKLIDNNTLPHLLFYGPPG 67
>UNIPROTKB|P28631 [details] [associations]
symbol:holB "DNA polymerase III, delta prime subunit"
species:83333 "Escherichia coli K-12" [GO:0008408 "3'-5'
exonuclease activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA;IDA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IDA] InterPro:IPR004622
InterPro:IPR008921 InterPro:IPR015199 Pfam:PF09115 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0006261 GO:GO:0008408 eggNOG:COG0470
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 PDB:1JR3 PDB:1XXH
PDB:1XXI PDB:3GLF PDB:3GLG PDB:3GLH PDB:3GLI PDBsum:1JR3
PDBsum:1XXH PDBsum:1XXI PDBsum:3GLF PDBsum:3GLG PDBsum:3GLH
PDBsum:3GLI EMBL:L04577 EMBL:L01483 PIR:S35523 RefSeq:NP_415617.1
RefSeq:YP_489367.1 PDB:1A5T PDBsum:1A5T ProteinModelPortal:P28631
SMR:P28631 DIP:DIP-9932N IntAct:P28631 MINT:MINT-1239429
EnsemblBacteria:EBESCT00000003941 EnsemblBacteria:EBESCT00000017474
GeneID:12934122 GeneID:945661 KEGG:ecj:Y75_p1069 KEGG:eco:b1099
PATRIC:32117439 EchoBASE:EB1463 EcoGene:EG11500
HOGENOM:HOG000192595 KO:K02341 OMA:CHSCHLM ProtClustDB:PRK07993
BioCyc:EcoCyc:EG11500-MONOMER BioCyc:ECOL316407:JW1085-MONOMER
EvolutionaryTrace:P28631 Genevestigator:P28631 TIGRFAMs:TIGR00678
Uniprot:P28631
Length = 334
Score = 176 (67.0 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 48/154 (31%), Positives = 76/154 (49%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
+ L+ + R HHA L G+G + L++ L C G+ + CG C C
Sbjct: 12 EKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGH-----KSCGHCRGCQ 66
Query: 461 KIDNGCFMDYIEM---DAASTRGINEMAQLLEQ-TIYAPINARYKIYVIDEVHMLTHHAF 516
+ G DY + +T G++ + ++ E+ +A + ++V D +LT A
Sbjct: 67 LMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAA-LLTDAAA 125
Query: 517 NAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
NA+LKTLEEPP F LAT EP+++ T+ SRC
Sbjct: 126 NALLKTLEEPPAETWFFLATREPERLLATLRSRC 159
>TIGR_CMR|CPS_2303 [details] [associations]
symbol:CPS_2303 "DNA polymerase III, delta prime subunit"
species:167879 "Colwellia psychrerythraea 34H" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] EMBL:CP000083 GenomeReviews:CP000083_GR
eggNOG:COG0470 GO:GO:0003887 KO:K02341 RefSeq:YP_269023.1
ProteinModelPortal:Q482J4 STRING:Q482J4 GeneID:3518620
KEGG:cps:CPS_2303 PATRIC:21467705 OMA:ETISEAC
BioCyc:CPSY167879:GI48-2368-MONOMER Uniprot:Q482J4
Length = 331
Score = 175 (66.7 bits), Expect = 6.3e-10, P = 6.3e-10
Identities = 59/237 (24%), Positives = 115/237 (48%)
Query: 412 LHHAYLFTGTRGVGKTTISRILAK---CLNCIGIDGNGGIT--SQPCGKCSVCV--KIDN 464
L HA + G G G+ +++ L + C N + G S+ CG+C C+ K DN
Sbjct: 21 LAHAIIIQGIEGAGQGALAKWLIELLICQNPLSTTNAAGTETISEACGQCKACLLKKSDN 80
Query: 465 GCFMDYIEMDAAS-TRGINEMAQ---LLEQTIYAPINARYKIYVIDEVHMLTHHAFNAML 520
+ D++ + + + T G++++ + LE+T + + K +I + ++T A NA+L
Sbjct: 81 --YPDHLLLKSENKTLGVDDIRRGNAFLEKTAHL---GKVKTILIPQAQVMTIAAANALL 135
Query: 521 KTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFET 580
KTLEEP +L T + + T++SRC + ++ M+ ++ L + N +++ +
Sbjct: 136 KTLEEPSANSYIVLITDDLDSLLPTIISRCAVYAIRPMIGEALLAQL-KVSNLGDVQLSS 194
Query: 581 SA--LNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEML-SIIDQKYLIQILD 634
SA N A ++ LTD+ ++ + + +L ++K L QI+D
Sbjct: 195 SAPLTNKANDTAYINLSHLPELTDKIVHQEFQVFNQYLLDYLLHGQSEEKLLSQIVD 251
>UNIPROTKB|J3KRK5 [details] [associations]
symbol:SHMT1 "Serine hydroxymethyltransferase, cytosolic"
species:9606 "Homo sapiens" [GO:0004372 "glycine
hydroxymethyltransferase activity" evidence=IEA] [GO:0006544
"glycine metabolic process" evidence=IEA] [GO:0006563 "L-serine
metabolic process" evidence=IEA] [GO:0008242 "omega peptidase
activity" evidence=IEA] [GO:0030170 "pyridoxal phosphate binding"
evidence=IEA] InterPro:IPR001085 InterPro:IPR006155
InterPro:IPR015421 Pfam:PF00464 PROSITE:PS50957 GO:GO:0030170
Gene3D:3.40.640.10 InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0008242
GO:GO:0006544 EMBL:AC127537 GO:GO:0004372 GO:GO:0006563
PANTHER:PTHR11680 HGNC:HGNC:10850 ChiTaRS:SHMT1 EMBL:AL353997
ProteinModelPortal:J3KRK5 Ensembl:ENST00000580002 Uniprot:J3KRK5
Length = 128
Score = 156 (60.0 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 31/56 (55%), Positives = 40/56 (71%)
Query: 8 LSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR 63
L D +++ II KE RQ +ELIASEN+ S AV+EA G+ L NKY+EGYPG+R
Sbjct: 26 LKDSDVEVYNIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSEGYPGQR 81
>TIGR_CMR|ECH_0333 [details] [associations]
symbol:ECH_0333 "serine hydroxymethyltransferase domain
protein" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0004372 "glycine hydroxymethyltransferase activity"
evidence=ISS] [GO:0006545 "glycine biosynthetic process"
evidence=ISS] [GO:0006730 "one-carbon metabolic process"
evidence=ISS] InterPro:IPR001085 InterPro:IPR015422 Pfam:PF00464
GO:GO:0030170 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 EMBL:CP000236 GenomeReviews:CP000236_GR
GO:GO:0008168 GO:GO:0006544 eggNOG:COG0112 GO:GO:0004372
GO:GO:0006563 PANTHER:PTHR11680 RefSeq:YP_507153.1
ProteinModelPortal:Q2GHD0 STRING:Q2GHD0 GeneID:3927872
KEGG:ech:ECH_0333 PATRIC:20576167
BioCyc:ECHA205920:GJNR-333-MONOMER Uniprot:Q2GHD0
Length = 68
Score = 156 (60.0 bits), Expect = 7.2e-10, P = 7.2e-10
Identities = 29/52 (55%), Positives = 39/52 (75%)
Query: 263 MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSH 314
MHVI AKAVAF E LKP+FK Y KQ++KN+K L ++ +R + V+GGTK +
Sbjct: 1 MHVIVAKAVAFAEALKPEFKDYAKQIIKNSKALGEVFKERELDFVTGGTKCY 52
>FB|FBgn0260985 [details] [associations]
symbol:RfC4 "Replication factor C subunit 4" species:7227
"Drosophila melanogaster" [GO:0007076 "mitotic chromosome
condensation" evidence=IMP;NAS] [GO:0000819 "sister chromatid
segregation" evidence=NAS] [GO:0006281 "DNA repair" evidence=TAS]
[GO:0006271 "DNA strand elongation involved in DNA replication"
evidence=NAS;TAS] [GO:0006260 "DNA replication"
evidence=ISS;NAS;TAS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;NAS] [GO:0004003 "ATP-dependent DNA helicase
activity" evidence=ISS] [GO:0003677 "DNA binding" evidence=IEA;NAS]
[GO:0016321 "female meiosis chromosome segregation" evidence=IMP]
[GO:0007067 "mitosis" evidence=IMP] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0000077 "DNA damage checkpoint" evidence=IMP]
[GO:0000076 "DNA replication checkpoint" evidence=IMP] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005875 "microtubule associated
complex" evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005634 GO:GO:0000077
GO:GO:0005875 EMBL:AE014296 GO:GO:0022008 GO:GO:0003677
GO:GO:0006281 GO:GO:0046331 GO:GO:0017111 GO:GO:0007076 KO:K10755
eggNOG:COG0470 GO:GO:0016321 GO:GO:0000076 GO:GO:0006271
SUPFAM:SSF48019 EMBL:U15967 GeneTree:ENSGT00550000075050
OMA:IQCLARI Pfam:PF08542 EMBL:AY094829 PIR:S55020
RefSeq:NP_523915.1 UniGene:Dm.839 ProteinModelPortal:P53034
SMR:P53034 DIP:DIP-22077N IntAct:P53034 MINT:MINT-925288
STRING:P53034 PaxDb:P53034 PRIDE:P53034 EnsemblMetazoa:FBtr0073264
GeneID:38492 KEGG:dme:Dmel_CG14999 CTD:5984 FlyBase:FBgn0260985
InParanoid:P53034 OrthoDB:EOG4P8D0Q PhylomeDB:P53034
GenomeRNAi:38492 NextBio:808930 Bgee:P53034 GermOnline:CG14999
Uniprot:P53034
Length = 331
Score = 156 (60.0 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 54/223 (24%), Positives = 96/223 (43%)
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI----NEMAQLLEQTIYAPIN 497
I G G+ +C + + + +E++A++ RGI N++ +Q + P
Sbjct: 54 IAGPPGVGKTTTIQCLARILLGDSYKEAVLELNASNERGIDVVRNKIKMFAQQKVTLP-R 112
Query: 498 ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKK 557
R+KI ++DE +T A A+ +T+E +F LA +KI + SRC K
Sbjct: 113 GRHKIVILDEADSMTEGAQQALRRTMEIYSSTTRFALACNTSEKIIEPIQSRCAMLRFTK 172
Query: 558 MLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALS-LTDQAINYSSEKITLNS 616
+ ++ L + E + + L I AQG MR L+ L A + IT +
Sbjct: 173 LSDAQVLAKLIEVAKWEKLNYTEDGLEAIVFTAQGDMRQGLNNLQSTAQGFGD--ITAEN 230
Query: 617 MQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYS 659
+ ++ K L +++ A D + I K+ + L YS
Sbjct: 231 VFKVCDEPHPKLLEEMIHHCAANDIHKAYKILAKL--WKLGYS 271
Score = 65 (27.9 bits), Expect = 8.3e-10, Sum P(2) = 8.3e-10
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
KYRP F ++G N + + ++ + + G GVGKTT + LA+ L
Sbjct: 21 KYRPVKFKEIVG-NEDTVARLSVFATQGNAPNIIIAGPPGVGKTTTIQCLARIL 73
>RGD|1308830 [details] [associations]
symbol:Mto1 "mitochondrial translation optimization 1 homolog
(S. cerevisiae)" species:10116 "Rattus norvegicus" [GO:0002098
"tRNA wobble uridine modification" evidence=ISO] [GO:0005739
"mitochondrion" evidence=ISO] [GO:0070899 "mitochondrial tRNA
wobble uridine modification" evidence=IEA;ISO] RGD:1308830
GO:GO:0005739 InterPro:IPR026904 Pfam:PF13932 GO:GO:0070899
GeneTree:ENSGT00390000011297 EMBL:AC097023 IPI:IPI00767953
PRIDE:F1LYH3 Ensembl:ENSRNOT00000057138 Uniprot:F1LYH3
Length = 194
Score = 153 (58.9 bits), Expect = 1.5e-09, P = 1.5e-09
Identities = 35/87 (40%), Positives = 53/87 (60%)
Query: 1249 DIKKQLKIQLQYEGYILRQXXXXXXXXXXXXXXXPHNLDYMKIQ--SLSIEARQKLNKYK 1306
++ ++LKI+ YE +L Q P +LDY+ I+ SLS E R+KL+ +
Sbjct: 91 ELARRLKIEATYESVLLYQLQEIKEVQQDEALQLPQDLDYLTIKDVSLSQEVREKLHLSR 150
Query: 1307 PETIGQASRISGVTPAALTLLLIYLKS 1333
P+TIG ASRI GVTPAA+ LL ++++
Sbjct: 151 PQTIGAASRIPGVTPAAIINLLRFVRN 177
>CGD|CAL0002015 [details] [associations]
symbol:RFC2 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1
RFC-like complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IEA] [GO:0003689 "DNA clamp loader activity"
evidence=IEA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0006270
"DNA replication initiation" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 CGD:CAL0002015
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000024 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224154 RefSeq:XP_720328.1
RefSeq:XP_888712.1 ProteinModelPortal:Q5AFN3 SMR:Q5AFN3
STRING:Q5AFN3 GeneID:3637939 GeneID:3703993 KEGG:cal:CaO19.7035
KEGG:cal:CaO19_7035 Uniprot:Q5AFN3
Length = 363
Score = 172 (65.6 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 74/309 (23%), Positives = 129/309 (41%)
Query: 369 RGFSELEIIKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTT 428
+ + E ++ KYRP + N + Q H K L + L H LF G G GKT+
Sbjct: 14 QAYEEEKLHHTPWVEKYRPKSLNDVSSQEHTIKVLTQTIKSGNLPHM-LFYGPPGTGKTS 72
Query: 429 ISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLL 488
LAK L + + + + + + + I+ A T N + L
Sbjct: 73 TILALAKELYGPNLYKSRVLELNASDERGISI------VREKIKNFARLTIS-NPTKEDL 125
Query: 489 EQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLS 548
+ P YKI ++DE +T+ A +A+ +T+E +F+L +I + S
Sbjct: 126 QNYPCPP----YKIIILDEADSMTNDAQSALRRTMENYAGITRFVLICNYITRIIDPITS 181
Query: 549 RCIQFNLKKMLHHDIVNNLCYILNKENIKFETS-----ALNLIATGAQGSMRDALSLTDQ 603
RC +F K + + + L YI +EN++FE+ + + + G +R A++
Sbjct: 182 RCSKFRFKLLNNENAQLRLKYIGQQENLRFESENNEHQVIQELLKISGGDLRKAITYLQS 241
Query: 604 A--------INYSSEKITLNSMQEMLSIIDQKYLIQILDALAE--QDGNLILSIANKIEI 653
A IN+ IT+ S++E I+ L +++ + Q LI I I +
Sbjct: 242 AAKLSETFDINHHQSLITIQSIRETAGILPDDILAELIQFIKSKTQQSRLIKYIDQSIIL 301
Query: 654 YNLSYSIVL 662
S I+L
Sbjct: 302 SGWSAQILL 310
>TIGR_CMR|CBU_0500 [details] [associations]
symbol:CBU_0500 "DNA polymerase III, delta prime subunit"
species:227377 "Coxiella burnetii RSA 493" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 InterPro:IPR015199
Pfam:PF09115 GO:GO:0003677 GO:GO:0006260 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0008408 GO:GO:0003887 GO:GO:0009360
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 RefSeq:NP_819534.1
ProteinModelPortal:Q83E34 GeneID:1208384 KEGG:cbu:CBU_0500
PATRIC:17929691 HOGENOM:HOG000192592 OMA:EMSTSAQ
ProtClustDB:PRK05707 BioCyc:CBUR227377:GJ7S-497-MONOMER
Uniprot:Q83E34
Length = 319
Score = 169 (64.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 62/241 (25%), Positives = 111/241 (46%)
Query: 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470
RL HA L TG+ G+GK ++ +A+ + C DG G+ CG C C G D+
Sbjct: 21 RLPHALLLTGSPGLGKFDFAKAVAEFILCEAQDG--GV----CGSCRGCQLFRAGNHPDF 74
Query: 471 IEM---DAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP 527
++ + + I ++ +L+ + Y++ +I + A NA LKTLEEP
Sbjct: 75 FKLIPEEKSKNIKIAQIRELMNALNQTAQHDGYQVAIIYPAEAMNRAAANAFLKTLEEPC 134
Query: 528 KYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587
I IL + +P + T+LSRC + + V L K+ A+ L+
Sbjct: 135 GQIFLILISHQPGALLPTILSRCQRLAFTASANEPTVQ----WLQKQIEGDRREAIQLL- 189
Query: 588 TGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKY-LIQILDALAEQDGNLILS 646
T A + AL L +++NY+ + L +Q ++++ Q+ + + L ++D +L
Sbjct: 190 TAASYAPLQALQL--KSLNYTEVRDRL--LQLIINLTAQRENAVSVAGTLLKEDLPFVLQ 245
Query: 647 I 647
+
Sbjct: 246 V 246
>FB|FBgn0030871 [details] [associations]
symbol:CG8142 species:7227 "Drosophila melanogaster"
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0031122 "cytoplasmic microtubule organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 GO:GO:0003677
GO:GO:0006260 EMBL:AE014298 GO:GO:0046331 GO:GO:0017111
GO:GO:0031122 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
GeneTree:ENSGT00550000074917 HSSP:Q8U4J3 EMBL:AY069598
RefSeq:NP_573245.1 UniGene:Dm.2050 SMR:Q9VX15 IntAct:Q9VX15
MINT:MINT-847740 STRING:Q9VX15 EnsemblMetazoa:FBtr0074472
GeneID:32763 KEGG:dme:Dmel_CG8142 UCSC:CG8142-RA
FlyBase:FBgn0030871 InParanoid:Q9VX15 OMA:VGQMMEQ OrthoDB:EOG4Q2BXJ
GenomeRNAi:32763 NextBio:780237 Uniprot:Q9VX15
Length = 353
Score = 170 (64.9 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 62/261 (23%), Positives = 110/261 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP N + ++ Q+ + L ++ L + L+ G G GKT S ILA G
Sbjct: 35 KYRPRNVDDVVEQSEVVAVLRKCVEGGDLPNMLLY-GPPGTGKT--STILAASRQIFGDM 91
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIY 503
I + + ++ ++ A+S R + P +KI
Sbjct: 92 FKDRILELNASD-ERGINVVRTKIKNFSQLSASSVRPDGKPCP--------P----FKII 138
Query: 504 VIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI 563
++DE +TH A +A+ +T+E+ + +F L +I + + SRC +F K + +
Sbjct: 139 ILDEADSMTHAAQSALRRTMEKESRSTRFCLICNYVSRIIVPITSRCSKFRFKALGEDKV 198
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ--EML 621
++ L YI E +K E A I + G +R A++ + +N+ EM
Sbjct: 199 IDRLKYICEMEGVKIEDDAYKSIVKISGGDLRRAITTLQSCYRLKGPEHIINTADLFEMS 258
Query: 622 SIIDQKYLIQILDALAEQDGN 642
+I + YL L+ + GN
Sbjct: 259 GVIPEYYLEDYLEVC--RSGN 277
>SGD|S000003829 [details] [associations]
symbol:RFC2 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0007049 "cell cycle" evidence=IEA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0031391 "Elg1 RFC-like complex"
evidence=IPI] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0006272 "leading strand elongation" evidence=IDA] [GO:0017076
"purine nucleotide binding" evidence=ISS] [GO:0000075 "cell cycle
checkpoint" evidence=IMP] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0007062 "sister chromatid cohesion"
evidence=IPI] [GO:0003689 "DNA clamp loader activity" evidence=IDA]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000003829
GO:GO:0005524 GO:GO:0005634 EMBL:BK006943 GO:GO:0003677
GO:GO:0006298 EMBL:L47993 GO:GO:0017111 GO:GO:0017076 KO:K06883
RefSeq:NP_012602.3 GeneID:853531 KEGG:sce:YJR068W KO:K10755
eggNOG:COG0470 GO:GO:0000075 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
RefSeq:NP_012606.3 GeneID:853535 KEGG:sce:YJR072C PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224154
OrthoDB:EOG4ZCXDF EMBL:D28499 EMBL:U26028 EMBL:Z49568 EMBL:AY557920
PIR:S45531 ProteinModelPortal:P40348 SMR:P40348 DIP:DIP-2528N
IntAct:P40348 MINT:MINT-480404 STRING:P40348 PaxDb:P40348
PeptideAtlas:P40348 EnsemblFungi:YJR068W CYGD:YJR068w
GeneTree:ENSGT00550000074917 OMA:SMTADAQ EvolutionaryTrace:P40348
NextBio:974230 Genevestigator:P40348 GermOnline:YJR068W
Uniprot:P40348
Length = 353
Score = 170 (64.9 bits), Expect = 2.8e-09, P = 2.8e-09
Identities = 68/272 (25%), Positives = 117/272 (43%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP N + + Q+H L L L H LF G G GKT S ILA G D
Sbjct: 30 KYRPKNLDEVTAQDHAVTVLKKTLKSANLPHM-LFYGPPGTGKT--STILALTKELYGPD 86
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQL-LEQTIYAPINARYKI 502
+ + + + + ++ A T +++ ++ LE P YKI
Sbjct: 87 ----LMKSRILELNASDERGISIVREKVKNFARLT--VSKPSKHDLENYPCPP----YKI 136
Query: 503 YVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHD 562
++DE +T A +A+ +T+E +F L +I + SRC +F K + +
Sbjct: 137 IILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASRCSKFRFKALDASN 196
Query: 563 IVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQA---INY--SSEKITLNSM 617
++ L +I +EN+K + L I + G +R ++L A Y + IT +
Sbjct: 197 AIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITSTQV 256
Query: 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIAN 649
+E+ ++ LI+I++ + D + I N
Sbjct: 257 EELAGVVPHDILIEIVEKVKSGDFDEIKKYVN 288
>UNIPROTKB|J9NUF8 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
EMBL:AAEX03014719 Ensembl:ENSCAFT00000046634 Uniprot:J9NUF8
Length = 316
Score = 137 (53.3 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 46/196 (23%), Positives = 91/196 (46%)
Query: 471 IEMDAASTRGINEM-AQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + +L I + +K+ ++DE +T A NA+ + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F L KI + SRC +F + +V L +++ +E + + + T
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVT 206
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIA 648
+ G MR AL++ Q+ N + K+T ++ + + ILD + QD +
Sbjct: 207 LSSGDMRRALNIL-QSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQD--FTTAYR 263
Query: 649 NKIEIYNLSYSIVLKD 664
N +E+ L + L D
Sbjct: 264 NIMELKTLK-GLALHD 278
Score = 78 (32.5 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP N LI I ++ + + RL H L+ G G GKT S ILA
Sbjct: 24 KYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKT--STILA 71
Score = 42 (19.8 bits), Expect = 3.1e-09, Sum P(3) = 3.1e-09
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 747 YNNLKNSKDTKGNLIHAVLT 766
Y N+ K KG +H +LT
Sbjct: 262 YRNIMELKTLKGLALHDILT 281
>RGD|1309280 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=IEA;ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1309280
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 GO:GO:0005663 Pfam:PF08542
GeneTree:ENSGT00550000075072 OMA:ILACARQ IPI:IPI00870052
Ensembl:ENSRNOT00000001498 UCSC:RGD:1309280 ArrayExpress:F1LQL0
Uniprot:F1LQL0
Length = 339
Score = 145 (56.1 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 48/196 (24%), Positives = 92/196 (46%)
Query: 471 IEMDAASTRGINEM-AQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + +L I R +K+ ++DE +T A NA+ + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKRGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F L KI + SRC +F + +V L +++ +EN+ + + T
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVT 206
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIA 648
+ G MR AL++ Q+ N + K+T ++ + + ILD + QD +
Sbjct: 207 LSSGDMRRALNIL-QSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQD--FTTAYK 263
Query: 649 NKIEIYNLSYSIVLKD 664
N +E+ L + L D
Sbjct: 264 NIMELKTLK-GLALHD 278
Score = 70 (29.7 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP LI I ++ + + RL H L+ G G GKT S ILA
Sbjct: 24 KYRPQTLADLISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKT--STILA 71
Score = 42 (19.8 bits), Expect = 3.9e-09, Sum P(3) = 3.9e-09
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 747 YNNLKNSKDTKGNLIHAVLT 766
Y N+ K KG +H +LT
Sbjct: 262 YKNIMELKTLKGLALHDILT 281
>DICTYBASE|DDB_G0286027 [details] [associations]
symbol:rfc4 "replication factor C subunit 4"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0286027 GO:GO:0005524
GO:GO:0005634 GenomeReviews:CM000153_GR GO:GO:0003677 GO:GO:0006298
EMBL:AAFI02000085 GO:GO:0017111 KO:K10755 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 RefSeq:XP_637900.1 HSSP:O28219
ProteinModelPortal:Q54MD4 STRING:Q54MD4 EnsemblProtists:DDB0232233
GeneID:8625410 KEGG:ddi:DDB_G0286027 OMA:SANDIVQ
ProtClustDB:CLSZ2430137 Uniprot:Q54MD4
Length = 347
Score = 168 (64.2 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 64/270 (23%), Positives = 115/270 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + + Q + +L +L+ L H LF G G GKT S ILA ++ G +
Sbjct: 15 KYRPKTVDDVSYQEDVISALKKSLNTGNLPHL-LFYGPPGTGKT--STILAIAMDIYGPE 71
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPIN--ARYK 501
+ Q + + D ++ T+ N + +T N A +K
Sbjct: 72 ----LMKQRVLELNAS---------DERGIEVVRTKIKNFAGYAVNKTTTGTSNPGATFK 118
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHH 561
+ ++DE +T A A+ +T+E K +F L +I + SRC +F K +
Sbjct: 119 LIILDEADSMTTDAQAALRRTIETTSKTTRFCLLCNYISRIIDPLASRCAKFRFKPLDTV 178
Query: 562 DIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEML 621
+ L +I +E IK E S I + G MR A++ A + + KI+ + + +
Sbjct: 179 ATIERLKFISQQEGIKCEESVYQAIQVVSNGDMRKAITYLQSAFRFFANKISEDVIYNIA 238
Query: 622 SIIDQKYLIQILDALAEQDGNLILSIANKI 651
+ + + Q++D + + + S+ I
Sbjct: 239 GSLPPQLIKQLVDCCKKNSFDRLQSMVQSI 268
>UNIPROTKB|E2RCF4 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:AAEX03014719 RefSeq:XP_534696.3
ProteinModelPortal:E2RCF4 Ensembl:ENSCAFT00000015721 GeneID:477499
KEGG:cfa:477499 NextBio:20852966 Uniprot:E2RCF4
Length = 339
Score = 137 (53.3 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 46/196 (23%), Positives = 91/196 (46%)
Query: 471 IEMDAASTRGINEM-AQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + +L I + +K+ ++DE +T A NA+ + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F L KI + SRC +F + +V L +++ +E + + + T
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVGEEKVDLSEDGMKALVT 206
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIA 648
+ G MR AL++ Q+ N + K+T ++ + + ILD + QD +
Sbjct: 207 LSSGDMRRALNIL-QSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQD--FTTAYR 263
Query: 649 NKIEIYNLSYSIVLKD 664
N +E+ L + L D
Sbjct: 264 NIMELKTLK-GLALHD 278
Score = 78 (32.5 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP N LI I ++ + + RL H L+ G G GKT S ILA
Sbjct: 24 KYRPQTLNDLISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKT--STILA 71
Score = 42 (19.8 bits), Expect = 5.0e-09, Sum P(3) = 5.0e-09
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 747 YNNLKNSKDTKGNLIHAVLT 766
Y N+ K KG +H +LT
Sbjct: 262 YRNIMELKTLKGLALHDILT 281
>UNIPROTKB|P40937 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019899 "enzyme binding" evidence=NAS]
[GO:0006260 "DNA replication" evidence=NAS;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0006281 "DNA repair"
evidence=NAS;TAS] [GO:0005663 "DNA replication factor C complex"
evidence=IDA] [GO:0000722 "telomere maintenance via recombination"
evidence=TAS] [GO:0000723 "telomere maintenance" evidence=TAS]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
Reactome:REACT_216 InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677
GO:GO:0019899 KO:K10756 GO:GO:0017111 GO:GO:0000084 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
OMA:ILACARQ EMBL:L07540 EMBL:AY254323 EMBL:AK094575 EMBL:AC131159
EMBL:BC001866 EMBL:BC013961 IPI:IPI00031514 IPI:IPI00925306
RefSeq:NP_001123584.1 RefSeq:NP_031396.1 RefSeq:NP_853556.2
UniGene:Hs.731908 PDB:1LFS PDBsum:1LFS ProteinModelPortal:P40937
SMR:P40937 DIP:DIP-36433N IntAct:P40937 MINT:MINT-1372754
STRING:P40937 PhosphoSite:P40937 DMDM:728777 PaxDb:P40937
PRIDE:P40937 DNASU:5985 Ensembl:ENST00000392542
Ensembl:ENST00000454402 GeneID:5985 KEGG:hsa:5985 UCSC:uc001twq.3
CTD:5985 GeneCards:GC12P118454 HGNC:HGNC:9973 HPA:HPA041037
MIM:600407 neXtProt:NX_P40937 PharmGKB:PA34342 InParanoid:P40937
PhylomeDB:P40937 GenomeRNAi:5985 NextBio:23303 ArrayExpress:P40937
Bgee:P40937 CleanEx:HS_RFC5 Genevestigator:P40937
GermOnline:ENSG00000111445 Uniprot:P40937
Length = 340
Score = 136 (52.9 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 41/172 (23%), Positives = 82/172 (47%)
Query: 471 IEMDAASTRGINEM-AQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + +L I + +K+ ++DE +T A NA+ + +E+ +
Sbjct: 88 LELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 147
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F L KI + SRC +F + +V L +++ +E + + + T
Sbjct: 148 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVT 207
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQD 640
+ G MR AL++ Q+ N + K+T ++ + + ILD + QD
Sbjct: 208 LSSGDMRRALNIL-QSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQD 258
Score = 79 (32.9 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 21/51 (41%), Positives = 27/51 (52%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP N LI I ++ +++ RL H L+ G G GKT S ILA
Sbjct: 25 KYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLY-GPPGTGKT--STILA 72
Score = 42 (19.8 bits), Expect = 5.2e-09, Sum P(3) = 5.2e-09
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 747 YNNLKNSKDTKGNLIHAVLT 766
Y N+ K KG +H +LT
Sbjct: 263 YRNITELKTLKGLALHDILT 282
>MGI|MGI:1919401 [details] [associations]
symbol:Rfc5 "replication factor C (activator 1) 5"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 MGI:MGI:1919401
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 GO:GO:0005663
HOVERGEN:HBG002053 Pfam:PF08542 HOGENOM:HOG000224152
GeneTree:ENSGT00550000075072 OMA:ILACARQ CTD:5985 EMBL:AK011489
IPI:IPI00132481 RefSeq:NP_082404.1 UniGene:Mm.27997
ProteinModelPortal:Q9D0F6 SMR:Q9D0F6 STRING:Q9D0F6
PhosphoSite:Q9D0F6 PaxDb:Q9D0F6 PRIDE:Q9D0F6
Ensembl:ENSMUST00000086461 GeneID:72151 KEGG:mmu:72151
InParanoid:Q9D0F6 OrthoDB:EOG4RBQJX NextBio:335574 Bgee:Q9D0F6
CleanEx:MM_RFC5 Genevestigator:Q9D0F6 GermOnline:ENSMUSG00000029363
Uniprot:Q9D0F6
Length = 339
Score = 142 (55.0 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 47/196 (23%), Positives = 92/196 (46%)
Query: 471 IEMDAASTRGINEM-AQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + +L I + +K+ ++DE +T A NA+ + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F L KI + SRC +F + +V L +++ +EN+ + + T
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVQEENVDISEDGMKALVT 206
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIA 648
+ G MR AL++ Q+ N + K+T ++ + + ILD + QD +
Sbjct: 207 LSSGDMRRALNIL-QSTNMAFGKVTEETVYTCTGHPLKTDIANILDWMLNQD--FTTAYK 263
Query: 649 NKIEIYNLSYSIVLKD 664
N +E+ L + L D
Sbjct: 264 NIMELKTLK-GLALHD 278
Score = 70 (29.7 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 20/51 (39%), Positives = 25/51 (49%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP LI I ++ + + RL H L+ G G GKT S ILA
Sbjct: 24 KYRPQTLADLISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKT--STILA 71
Score = 42 (19.8 bits), Expect = 8.6e-09, Sum P(3) = 8.6e-09
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 747 YNNLKNSKDTKGNLIHAVLT 766
Y N+ K KG +H +LT
Sbjct: 262 YKNIMELKTLKGLALHDILT 281
>UNIPROTKB|Q81WK3 [details] [associations]
symbol:trmFO
"Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO" species:1392 "Bacillus anthracis" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01037 InterPro:IPR002218 InterPro:IPR004417
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0008033
InterPro:IPR020595 PROSITE:PS01280 PROSITE:PS01281
RefSeq:NP_846213.1 RefSeq:YP_020609.1 RefSeq:YP_029934.1
ProteinModelPortal:Q81WK3 IntAct:Q81WK3 DNASU:1086598
EnsemblBacteria:EBBACT00000008528 EnsemblBacteria:EBBACT00000013934
EnsemblBacteria:EBBACT00000019629 GeneID:1086598 GeneID:2818794
GeneID:2850973 KEGG:ban:BA_3970 KEGG:bar:GBAA_3970 KEGG:bat:BAS3683
eggNOG:COG1206 HOGENOM:HOG000252054 KO:K04094 OMA:RFAGQIT
ProtClustDB:PRK05335 BioCyc:BANT260799:GJAJ-3741-MONOMER
BioCyc:BANT261594:GJ7F-3858-MONOMER GO:GO:0047151
TIGRFAMs:TIGR00137 Uniprot:Q81WK3
Length = 434
Score = 168 (64.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNL-KSSLETKQIHGLFFAG 1075
G T L + Q E++Q I G++NA I+R G + N NL + + + KQ LFFAG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRDP 1106
Q+ G GY E+A+ GLLAG+NAA + +P
Sbjct: 339 QMTGVEGYVESAASGLLAGINAARLVKGEEP 369
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 27/110 (24%), Positives = 49/110 (44%)
Query: 727 GFTMTLLRML-VFQTLHNHLD-YNNLKNSKDTKGNLIHAVLTVLDAMGGIMAIATDKSGI 784
G + L M V QT +H D + L S + N T+ +A+G I + +
Sbjct: 26 GVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRAN------TLTNAVG---VIKEEMRLM 76
Query: 785 QFRILNSSKGAAVRATRA-QVDRILYKQAIRFYLENQLNLYLFQEEVDDL 833
I+ ++ +V A A VDR + + Y++N N+ + EE+ ++
Sbjct: 77 DSVIIRAADECSVPAGGALAVDRHEFAAKVTEYVKNHPNVTVMNEEITEI 126
>TIGR_CMR|BA_3970 [details] [associations]
symbol:BA_3970 "gid protein" species:198094 "Bacillus
anthracis str. Ames" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01037
InterPro:IPR002218 InterPro:IPR004417 Pfam:PF01134 GO:GO:0005737
GO:GO:0050660 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008033 InterPro:IPR020595
PROSITE:PS01280 PROSITE:PS01281 RefSeq:NP_846213.1
RefSeq:YP_020609.1 RefSeq:YP_029934.1 ProteinModelPortal:Q81WK3
IntAct:Q81WK3 DNASU:1086598 EnsemblBacteria:EBBACT00000008528
EnsemblBacteria:EBBACT00000013934 EnsemblBacteria:EBBACT00000019629
GeneID:1086598 GeneID:2818794 GeneID:2850973 KEGG:ban:BA_3970
KEGG:bar:GBAA_3970 KEGG:bat:BAS3683 eggNOG:COG1206
HOGENOM:HOG000252054 KO:K04094 OMA:RFAGQIT ProtClustDB:PRK05335
BioCyc:BANT260799:GJAJ-3741-MONOMER
BioCyc:BANT261594:GJ7F-3858-MONOMER GO:GO:0047151
TIGRFAMs:TIGR00137 Uniprot:Q81WK3
Length = 434
Score = 168 (64.2 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 38/91 (41%), Positives = 54/91 (59%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNL-KSSLETKQIHGLFFAG 1075
G T L + Q E++Q I G++NA I+R G + N NL + + + KQ LFFAG
Sbjct: 279 GFQTHLKWGPQKEVLQLIPGLENAEIVRYGVMHRNTFINSPNLLRPTYQYKQRDDLFFAG 338
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRDP 1106
Q+ G GY E+A+ GLLAG+NAA + +P
Sbjct: 339 QMTGVEGYVESAASGLLAGINAARLVKGEEP 369
Score = 46 (21.3 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 27/110 (24%), Positives = 49/110 (44%)
Query: 727 GFTMTLLRML-VFQTLHNHLD-YNNLKNSKDTKGNLIHAVLTVLDAMGGIMAIATDKSGI 784
G + L M V QT +H D + L S + N T+ +A+G I + +
Sbjct: 26 GVQVRLYEMRPVRQTPAHHTDKFAELVCSNSLRAN------TLTNAVG---VIKEEMRLM 76
Query: 785 QFRILNSSKGAAVRATRA-QVDRILYKQAIRFYLENQLNLYLFQEEVDDL 833
I+ ++ +V A A VDR + + Y++N N+ + EE+ ++
Sbjct: 77 DSVIIRAADECSVPAGGALAVDRHEFAAKVTEYVKNHPNVTVMNEEITEI 126
>UNIPROTKB|Q32PI3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542
HOGENOM:HOG000224152 GeneTree:ENSGT00550000075072 OMA:ILACARQ
CTD:5985 OrthoDB:EOG4RBQJX EMBL:DAAA02045332 EMBL:BC108105
IPI:IPI00688331 RefSeq:NP_001068826.1 UniGene:Bt.21988 SMR:Q32PI3
STRING:Q32PI3 Ensembl:ENSBTAT00000009392 GeneID:508389
KEGG:bta:508389 NextBio:20868499 Uniprot:Q32PI3
Length = 316
Score = 136 (52.9 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 46/196 (23%), Positives = 91/196 (46%)
Query: 471 IEMDAASTRGINEM-AQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + +L I + +K+ ++DE +T A NA+ + +E+ +
Sbjct: 87 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 146
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F L KI + SRC +F + +V L +++ +E + + + T
Sbjct: 147 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALIT 206
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIA 648
+ G MR AL++ Q+ N + K+T ++ + + ILD + QD +
Sbjct: 207 LSSGDMRRALNIL-QSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQD--FTTAYR 263
Query: 649 NKIEIYNLSYSIVLKD 664
N +E+ L + L D
Sbjct: 264 NIMELKTLK-GLALHD 278
Score = 73 (30.8 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP + LI I ++ + + RL H L+ G G GKT S ILA
Sbjct: 24 KYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKT--STILA 71
Score = 42 (19.8 bits), Expect = 1.3e-08, Sum P(3) = 1.3e-08
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 747 YNNLKNSKDTKGNLIHAVLT 766
Y N+ K KG +H +LT
Sbjct: 262 YRNIMELKTLKGLALHDILT 281
>ASPGD|ASPL0000017750 [details] [associations]
symbol:AN8064 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003689 "DNA clamp
loader activity" evidence=IEA] [GO:0016887 "ATPase activity"
evidence=IEA] [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0031390
"Ctf18 RFC-like complex" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IEA]
[GO:0031389 "Rad17 RFC-like complex" evidence=IEA] [GO:0006272
"leading strand elongation" evidence=IEA] [GO:0007062 "sister
chromatid cohesion" evidence=IEA] [GO:0000077 "DNA damage
checkpoint" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:BN001302 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:AACD01000139 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8 OMA:ILACARQ
RefSeq:XP_681333.1 ProteinModelPortal:Q5AUG6 STRING:Q5AUG6
EnsemblFungi:CADANIAT00004090 GeneID:2869010 KEGG:ani:AN8064.2
Uniprot:Q5AUG6
Length = 398
Score = 165 (63.1 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 60/238 (25%), Positives = 113/238 (47%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP+ + + G I ++ ++ +L H L+ G G GKT S ILA G
Sbjct: 50 KYRPNTLDDVSGHKDILATINRFVEANQLPHLLLY-GPPGTGKT--STILALARRIYGSK 106
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA-ASTRGINEMAQLLEQTIYAPINARYKI 502
+ + + D G + ++ AST+ I MA T + + A +K+
Sbjct: 107 NMRQMVLE------LNASDDRGIDVVREQIKTFASTKQIFSMAP--SATGKSSL-ASFKL 157
Query: 503 YVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHD 562
++DE +T A A+ + +E+ +F + K+ +LSRC +F + D
Sbjct: 158 IILDEADAMTSTAQMALRRIMEKYTANTRFCIIANYTHKLSPALLSRCTRFRFSPLKEQD 217
Query: 563 IVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITL-NSMQE 619
I + ++ KE+++ + A++ + T ++G MR AL++ QA + SS+ + + N+ Q+
Sbjct: 218 IRVLIDQVIEKEDVRIQPEAVDSLVTLSRGDMRRALNVL-QACHASSKPLPIKNAPQD 274
>SGD|S000005234 [details] [associations]
symbol:RFC3 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0031389 "Rad17 RFC-like
complex" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;IDA] [GO:0031390 "Ctf18 RFC-like complex"
evidence=IPI] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IDA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA] [GO:0006272 "leading
strand elongation" evidence=IDA] [GO:0006298 "mismatch repair"
evidence=TAS] [GO:0007062 "sister chromatid cohesion" evidence=IPI]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 SGD:S000005234
GO:GO:0005524 GO:GO:0005634 GO:GO:0003677 EMBL:BK006947
GO:GO:0016887 GO:GO:0006298 KO:K10756 eggNOG:COG0470 EMBL:U23084
GO:GO:0031390 GO:GO:0007062 GO:GO:0006272 SUPFAM:SSF48019
GO:GO:0005663 GO:GO:0031391 EMBL:Z71566 PDB:1SXJ PDBsum:1SXJ
GO:GO:0031389 Pfam:PF08542 HOGENOM:HOG000224152 OrthoDB:EOG4K0TX8
EMBL:L18755 EMBL:U26029 PIR:A36988 RefSeq:NP_014109.1
ProteinModelPortal:P38629 SMR:P38629 DIP:DIP-2529N IntAct:P38629
MINT:MINT-540713 STRING:P38629 PaxDb:P38629 PeptideAtlas:P38629
EnsemblFungi:YNL290W GeneID:855426 KEGG:sce:YNL290W CYGD:YNL290w
GeneTree:ENSGT00550000075072 OMA:YAHKLTP EvolutionaryTrace:P38629
NextBio:979295 Genevestigator:P38629 GermOnline:YNL290W
Uniprot:P38629
Length = 340
Score = 128 (50.1 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 41/187 (21%), Positives = 84/187 (44%)
Query: 471 IEMDAASTRGINEMA-QLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + Q+ + I ++ +K+ ++DE +T+ A NA+ + +E K
Sbjct: 80 LELNASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMTNAAQNALRRVIERYTK 139
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F + K+ +LSRC +F + + I + +L E +K +A +
Sbjct: 140 NTRFCVLANYAHKLTPALLSRCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIE 199
Query: 589 GAQGSMRDALSLTDQAI----NYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLI 644
+ G MR L++ N ++I+ + + E L +L ++ E D
Sbjct: 200 LSNGDMRRVLNVLQSCKATLDNPDEDEISDDVIYECCGAPRPSDLKAVLKSILEDDWGTA 259
Query: 645 LSIANKI 651
NK+
Sbjct: 260 HYTLNKV 266
Score = 83 (34.3 bits), Expect = 1.8e-08, Sum P(2) = 1.8e-08
Identities = 19/52 (36%), Positives = 29/52 (55%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAK 435
KYRP + + GQN + ++ +D+ +L H LF G G GKT+ LA+
Sbjct: 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLPHL-LFYGPPGTGKTSTIVALAR 68
>CGD|CAL0000922 [details] [associations]
symbol:RFC4 species:5476 "Candida albicans" [GO:0003689 "DNA
clamp loader activity" evidence=IEA] [GO:0005663 "DNA replication
factor C complex" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 CGD:CAL0000922
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
EMBL:AACQ01000032 KO:K10755 eggNOG:COG0470 SUPFAM:SSF48019
HOGENOM:HOG000224155 Pfam:PF08542 RefSeq:XP_719417.1
ProteinModelPortal:Q5ACI4 SMR:Q5ACI4 STRING:Q5ACI4 GeneID:3638994
KEGG:cal:CaO19.7658 Uniprot:Q5ACI4
Length = 323
Score = 151 (58.2 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 54/209 (25%), Positives = 95/209 (45%)
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI----NEMAQLLEQTIYAPI 496
G+ G G TS C + D +E++A+ RGI N++ Q + I P
Sbjct: 49 GLPGIGKTTSIHCLAYELLG--DEHYHQATMELNASDDRGIDVVRNKIKQFAQTKISLP- 105
Query: 497 NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK 556
R KI ++DE +T A A+ +T+E +F A + KI + SRC
Sbjct: 106 PGRQKIIILDEADSMTPGAQQALRRTIEIYSNTTRFAFACNQSSKIIEPLQSRCAILRYN 165
Query: 557 KMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALS-LTDQAINYSSEKITLN 615
++ +++ L I+ E++K+ T L + A+G MR A++ L + +N
Sbjct: 166 RLSDEEVLARLLEIIKMEDVKYNTEGLQALIFTAEGDMRQAINNLQSTVAGFGF----VN 221
Query: 616 SMQEMLSIIDQKY--LIQ--ILDALAEQD 640
+ + I+DQ + +IQ +L L ++D
Sbjct: 222 DVN-VFKIVDQPHPLVIQSILLSCLKDKD 249
Score = 56 (24.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP ++G + L + + + + +G G+GKTT LA
Sbjct: 14 KYRPKKLEDIVGNEETVERLKLIVQDGNMPNM-IISGLPGIGKTTSIHCLA 63
>UNIPROTKB|F1RKG3 [details] [associations]
symbol:RFC5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000075072 OMA:ILACARQ
EMBL:CU468330 Ensembl:ENSSSCT00000010801 Uniprot:F1RKG3
Length = 354
Score = 137 (53.3 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 46/196 (23%), Positives = 91/196 (46%)
Query: 471 IEMDAASTRGINEM-AQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + +L I + +K+ ++DE +T A NA+ + +E+ +
Sbjct: 102 LELNASDDRGIDIVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 161
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F L KI + SRC +F + +V L +++ +E + + + T
Sbjct: 162 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALIT 221
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIA 648
+ G MR AL++ Q+ N + K+T ++ + + ILD + QD +
Sbjct: 222 LSSGDMRRALNIL-QSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQD--FTTAYR 278
Query: 649 NKIEIYNLSYSIVLKD 664
N +E+ L + L D
Sbjct: 279 NIMELKTLK-GLALND 293
Score = 73 (30.8 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP + LI I ++ + + RL H L+ G G GKT S ILA
Sbjct: 39 KYRPQTLDDLISHQDILSTIQKFISEDRLPHLLLY-GPPGTGKT--STILA 86
>POMBASE|SPAC1687.03c [details] [associations]
symbol:rfc4 "DNA replication factor C complex subunit
Rfc4 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0031389 "Rad17 RFC-like complex"
evidence=TAS] [GO:0031390 "Ctf18 RFC-like complex" evidence=TAS]
[GO:0031391 "Elg1 RFC-like complex" evidence=IDA] [GO:0043596
"nuclear replication fork" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=TAS] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748
PomBase:SPAC1687.03c GO:GO:0005829 GO:GO:0005524 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0007049 GO:GO:0000790
GO:GO:0043596 GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0031390
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 HOGENOM:HOG000224155 Pfam:PF08542 PIR:T37746
RefSeq:NP_593121.1 ProteinModelPortal:O94449 SMR:O94449
STRING:O94449 EnsemblFungi:SPAC1687.03c.1 GeneID:2542790
KEGG:spo:SPAC1687.03c OMA:GTYELPW OrthoDB:EOG4PP1RM
NextBio:20803834 Uniprot:O94449
Length = 342
Score = 149 (57.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 47/196 (23%), Positives = 88/196 (44%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A+ RGI N + ++ + P R+KI ++DE +T A A+ +T+E
Sbjct: 88 LELNASDERGIDVVRNRIKAFAQKKVILP-PGRHKIIILDEADSMTAGAQQALRRTMEIY 146
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
+F LA + KI + SRC ++ ++ L I E + + L +
Sbjct: 147 SNTTRFALACNQSNKIIEPIQSRCAILRYSRLTDQQVLQRLLNICKAEKVNYTDDGLAAL 206
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDAL-AEQDGNLIL 645
A+G MR A++ + L + + + + DQ + I L A Q GN+ +
Sbjct: 207 IMTAEGDMRQAVNNLQSTV----AGFGLVNGENVFRVADQPSPVAIHAMLTACQSGNIDV 262
Query: 646 SIANKIEIYNLSYSIV 661
++ I++L +S V
Sbjct: 263 ALEKLQGIWDLGFSAV 278
Score = 58 (25.5 bits), Expect = 3.2e-08, Sum P(2) = 3.2e-08
Identities = 20/78 (25%), Positives = 34/78 (43%)
Query: 363 SSAITTRGFSELE---IIKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFT 419
S+A+++ F E ++ KYRP + ++G L + + H + +
Sbjct: 2 SNAVSSSVFGEKNNSVAYELPWVEKYRPIVLDDIVGNEETIDRLKVIAKEGNMPHLVI-S 60
Query: 420 GTRGVGKTTISRILAKCL 437
G G+GKTT LA L
Sbjct: 61 GMPGIGKTTSILCLAHAL 78
>POMBASE|SPAC23D3.02 [details] [associations]
symbol:rfc2 "DNA replication factor C complex subunit
Rfc2" species:4896 "Schizosaccharomyces pombe" [GO:0000790 "nuclear
chromatin" evidence=IC] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005663 "DNA replication
factor C complex" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006270 "DNA replication initiation" evidence=IMP] [GO:0031389
"Rad17 RFC-like complex" evidence=TAS] [GO:0031390 "Ctf18 RFC-like
complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like complex"
evidence=IDA] [GO:0033314 "mitotic DNA replication checkpoint"
evidence=IMP] [GO:0043596 "nuclear replication fork" evidence=IC]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC23D3.02
GO:GO:0005829 GO:GO:0005524 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0000790 GO:GO:0006270 GO:GO:0043596
GO:GO:0017111 KO:K10755 eggNOG:COG0470 GO:GO:0033314 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 PIR:T38278 RefSeq:NP_594540.1
ProteinModelPortal:Q09843 SMR:Q09843 STRING:Q09843
EnsemblFungi:SPAC23D3.02.1 GeneID:2541908 KEGG:spo:SPAC23D3.02
HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4ZCXDF NextBio:20802995
Uniprot:Q09843
Length = 340
Score = 160 (61.4 bits), Expect = 3.3e-08, P = 3.3e-08
Identities = 65/287 (22%), Positives = 122/287 (42%)
Query: 385 YRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
YRP + + Q + L L L H LF G+ G GKT S ILA G
Sbjct: 25 YRPKTLDQVSSQESTVQVLKKTLLSNNLPHM-LFYGSPGTGKT--STILALSRELFG--- 78
Query: 445 NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN----EMAQLLEQTIYAPINAR- 499
K V +E++A+ RGI+ ++ + T+ ++
Sbjct: 79 ------PQLMKSRV------------LELNASDERGISIIREKVKSFAKTTVTNKVDGYP 120
Query: 500 ---YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK 556
+KI ++DE +T A A+ +T+E + +F L +I + SRC ++ K
Sbjct: 121 CPPFKIIILDEADSMTQDAQAALRRTMESYARITRFCLICNYMTRIIDPLSSRCSKYRFK 180
Query: 557 KMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN-YSSEKITLN 615
+ + ++V L +I + + E +N + + G MR A++ A N + IT++
Sbjct: 181 PLDNENMVKRLEFIAADQAVSMEPGVVNALVECSGGDMRKAITFLQSAANLHQGTPITIS 240
Query: 616 SMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVL 662
S++E+ + + +LD ++ + I +++ + S I+L
Sbjct: 241 SVEELAGAVPYNIIRSLLDTAYTKNVSNIETLSRDVAAEGYSTGIIL 287
>TAIR|locus:2180315 [details] [associations]
symbol:EMB2775 "EMBRYO DEFECTIVE 2775" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0009793 "embryo
development ending in seed dormancy" evidence=IMP] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=RCA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006260
KO:K10756 GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542
HOGENOM:HOG000224153 OMA:TRIMCLL HSSP:Q8U4J3 EMBL:AY074381
EMBL:AY091236 IPI:IPI00528406 RefSeq:NP_198126.1 UniGene:At.19785
ProteinModelPortal:Q8VXX4 SMR:Q8VXX4 STRING:Q8VXX4 PaxDb:Q8VXX4
PRIDE:Q8VXX4 EnsemblPlants:AT5G27740.1 GeneID:832836
KEGG:ath:AT5G27740 TAIR:At5g27740 InParanoid:Q8VXX4
PhylomeDB:Q8VXX4 ProtClustDB:CLSN2687133 ArrayExpress:Q8VXX4
Genevestigator:Q8VXX4 Uniprot:Q8VXX4
Length = 354
Score = 160 (61.4 bits), Expect = 3.7e-08, P = 3.7e-08
Identities = 66/283 (23%), Positives = 128/283 (45%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL---NCI 440
KYRP + + +I I++ L + ++ H LF G G GK T+ L K + +
Sbjct: 6 KYRPKSLDKVIVHEDIAQKLKKLVSEQDCPHL-LFYGPSGSGKKTLIMALLKQIYGASAE 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINE--MAQ--LLEQTIYAPI 496
+ G ++ +++ +++E+ S G + + Q + E PI
Sbjct: 65 KVKVENRAWKVDAGSRTIDLELTTLSSTNHVEL-TPSDAGFQDRYIVQEIIKEMAKNRPI 123
Query: 497 NAR----YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQ 552
+ + YK+ V++EV L+ A +++ +T+E+ + IL K+ + SRC+
Sbjct: 124 DTKGKKGYKVLVLNEVDKLSREAQHSLRRTMEKYSSSCRLILCCNSSSKVTEAIKSRCLN 183
Query: 553 FNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDA-LSL-TDQAINYSSE 610
+ +IV L ++ KE+++ IA + S+R A LSL T + NY
Sbjct: 184 VRINAPSQEEIVKVLEFVAKKESLQLPQGFAARIAEKSNRSLRRAILSLETCRVQNYP-- 241
Query: 611 KITLNSMQEMLSIID-QKYLIQIL-DALAEQDGNLILSIANKI 651
T N +++S +D ++Y+ +I D + EQ + + K+
Sbjct: 242 -FTGN---QVISPMDWEEYVAEIATDMMKEQSPKKLFQVRGKV 280
>WB|WBGene00018409 [details] [associations]
symbol:F44B9.8 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0009360 "DNA polymerase III complex" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260 KO:K10756
GO:GO:0017111 eggNOG:COG0470 EMBL:FO080400 SUPFAM:SSF48019
Pfam:PF08542 HOGENOM:HOG000224152 OMA:VIAFHER
GeneTree:ENSGT00550000075072 PIR:S44809 RefSeq:NP_498750.2
ProteinModelPortal:P34429 SMR:P34429 DIP:DIP-27001N IntAct:P34429
MINT:MINT-1095598 STRING:P34429 PaxDb:P34429 EnsemblMetazoa:F44B9.8
GeneID:176131 KEGG:cel:CELE_F44B9.8 UCSC:F44B9.8 CTD:176131
WormBase:F44B9.8 InParanoid:P34429 NextBio:891256 Uniprot:P34429
Length = 368
Score = 160 (61.4 bits), Expect = 4.1e-08, P = 4.1e-08
Identities = 56/253 (22%), Positives = 108/253 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRPS + L+ I K+L ++ + L H LF G G GKTT +LA
Sbjct: 34 KYRPSKLDELVAHEQIVKTLTKFIENRTLPHL-LFYGPPGTGKTTT--VLAAARQMYSPT 90
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIY 503
+ + + + +++ A T+G+ + T P +K+
Sbjct: 91 KMASMVLELNASDERGIDVVRNTIVNF-----AQTKGLQAFSTS-SNTGTVP----FKLV 140
Query: 504 VIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI 563
++DE +T A NA+ + +E+ ++F + I + SRC +F + I
Sbjct: 141 ILDEADAMTKDAQNALRRVIEKYTDNVRFCIICNYLASIVPAIQSRCTRFRFAPLDQKLI 200
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSI 623
V L YI+ E +K + + ++G MR ++ T Q+ S + ++ N++ + +
Sbjct: 201 VPRLEYIVETEQLKMTPDGKDALLIVSKGDMRTVIN-TLQSTAMSFDTVSENTVYQCIGQ 259
Query: 624 IDQKYLIQILDAL 636
K + +++ L
Sbjct: 260 PTPKEMKEVVKTL 272
>UNIPROTKB|I3LHX6 [details] [associations]
symbol:RFC2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005663 "DNA replication factor C complex"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 GeneTree:ENSGT00550000075050 OMA:IQCLARI Pfam:PF08542
EMBL:FP340223 Ensembl:ENSSSCT00000028815 Uniprot:I3LHX6
Length = 295
Score = 161 (61.7 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 41/133 (30%), Positives = 66/133 (49%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A++ RGI N++ +Q + P R+KI ++DE +T A A+ +T+E
Sbjct: 44 LELNASNDRGIDVVRNKIKMFAQQKVTLP-KGRHKIIILDEADSMTDGAQQALRRTMEIY 102
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
K +F LA KI + SRC K+ I+ L ++ KE + + L I
Sbjct: 103 SKTTRFALACNASDKIIEPIQSRCAVLRYTKLTDAQILARLLNVIEKEKVPYTDDGLEAI 162
Query: 587 ATGAQGSMRDALS 599
AQG MR AL+
Sbjct: 163 IFTAQGDMRQALN 175
Score = 39 (18.8 bits), Expect = 5.0e-08, Sum P(2) = 5.0e-08
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 417 LFTGTRGVGKTTISRILAKCL 437
+ G G GKTT LA+ L
Sbjct: 14 IIAGPPGTGKTTSILCLARAL 34
>POMBASE|SPAC27E2.10c [details] [associations]
symbol:rfc3 "DNA replication factor C complex subunit
Rfc3" species:4896 "Schizosaccharomyces pombe" [GO:0000077 "DNA
damage checkpoint" evidence=IMP] [GO:0000790 "nuclear chromatin"
evidence=IC] [GO:0005524 "ATP binding" evidence=ISM] [GO:0005634
"nucleus" evidence=IC;IDA] [GO:0005663 "DNA replication factor C
complex" evidence=TAS] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IC]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] [GO:0065007 "biological regulation" evidence=NAS]
[GO:0003689 "DNA clamp loader activity" evidence=TAS]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 PomBase:SPAC27E2.10c
GO:GO:0005829 GO:GO:0005524 GO:GO:0000077 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0000790
GO:GO:0043596 KO:K10756 GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 EMBL:AB017039 EMBL:AB017040 EMBL:AJ012839 PIR:T43410
RefSeq:XP_001713099.1 ProteinModelPortal:O14003 SMR:O14003
STRING:O14003 EnsemblFungi:SPAC27E2.10c.1 GeneID:2541493
KEGG:spo:SPAC27E2.10c HOGENOM:HOG000224152 OMA:VIAFHER
OrthoDB:EOG4K0TX8 NextBio:20802592 Uniprot:O14003
Length = 342
Score = 130 (50.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 32/149 (21%), Positives = 78/149 (52%)
Query: 471 IEMDAASTRGINEMAQLLEQ--TIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + + ++ + + +K+ ++DE +T A NA+ + +E+ K
Sbjct: 90 MELNASDDRGIDAVREQIKNFASTRQIFASTFKMIILDEADAMTLAAQNALRRVIEKYTK 149
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
++F + KI + SRC +F + + +I + +++ E+ + A +
Sbjct: 150 NVRFCIICNYINKISPAIQSRCTRFRFQPLPPKEIEKTVDHVIQSEHCNIDPDAKMAVLR 209
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSM 617
++G MR AL++ QA + + + I ++++
Sbjct: 210 LSKGDMRKALNIL-QACHAAYDHIDVSAI 237
Score = 76 (31.8 bits), Expect = 5.8e-08, Sum P(2) = 5.8e-08
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP+N ++ I +L + R+ H LF G G GKT S ILA
Sbjct: 28 KYRPANLEDVVSHKDIISTLEKFISSNRVPHM-LFYGPPGTGKT--STILA 75
>FB|FBgn0032244 [details] [associations]
symbol:RfC3 "Replication factor C subunit 3" species:7227
"Drosophila melanogaster" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006260 "DNA replication" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0017111 "nucleoside-triphosphatase activity"
evidence=IEA] [GO:0005875 "microtubule associated complex"
evidence=IDA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0046331
"lateral inhibition" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0005875 EMBL:AE014134
GO:GO:0022008 GO:GO:0003677 GO:GO:0006260 GO:GO:0046331 KO:K10756
GO:GO:0017111 eggNOG:COG0470 SUPFAM:SSF48019 Pfam:PF08542 CTD:5983
GeneTree:ENSGT00550000075072 OMA:ILACARQ HSSP:Q8U4J3 EMBL:AF247499
EMBL:AY119188 RefSeq:NP_609399.1 UniGene:Dm.3298 SMR:Q9VKW3
IntAct:Q9VKW3 MINT:MINT-284572 STRING:Q9VKW3
EnsemblMetazoa:FBtr0080019 GeneID:34423 KEGG:dme:Dmel_CG5313
UCSC:CG5313-RA FlyBase:FBgn0032244 InParanoid:Q9VKW3
OrthoDB:EOG451C6M GenomeRNAi:34423 NextBio:788424 Uniprot:Q9VKW3
Length = 332
Score = 119 (46.9 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 42/199 (21%), Positives = 92/199 (46%)
Query: 471 IEMDAASTRGINEM-AQLLE----QTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE 525
+E++A+ RGI + Q+L +TI+ +K+ ++DE +T+ A NA+ + +E+
Sbjct: 79 LELNASDDRGIGIVRGQILNFASTRTIFCDT---FKLIILDEADAMTNDAQNALRRIIEK 135
Query: 526 PPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL 585
++F + KI + SRC +F + ++ L I+ E ++
Sbjct: 136 YTDNVRFCVICNYLSKIIPALQSRCTRFRFAPLSQDQMMPRLEKIIEAEAVQITEDGKRA 195
Query: 586 IATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLIL 645
+ T A+G MR L++ + + + + +++ + ++ + QIL AL G+ +
Sbjct: 196 LLTLAKGDMRKVLNVLQSTV-MAFDTVNEDNVYMCVGYPLRQDIEQILKALLS--GSSLE 252
Query: 646 SIANKIEIYNLSYSIVLKD 664
+E + + L+D
Sbjct: 253 DSFKTVESAKYARGLALED 271
Score = 87 (35.7 bits), Expect = 6.3e-08, Sum P(2) = 6.3e-08
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 377 IKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
+++ KYRPS + LI I ++ + +K+L H LF G G GKT S ILA
Sbjct: 9 VRMPWVEKYRPSGLDDLISHEEIISTITRFISRKQLPHL-LFYGPPGTGKT--STILA 63
>CGD|CAL0003213 [details] [associations]
symbol:RCF3 species:5476 "Candida albicans" [GO:0005663 "DNA
replication factor C complex" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0031390 "Ctf18 RFC-like complex" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] [GO:0031391 "Elg1 RFC-like
complex" evidence=IEA] [GO:0031389 "Rad17 RFC-like complex"
evidence=IEA] [GO:0006272 "leading strand elongation" evidence=IEA]
[GO:0007062 "sister chromatid cohesion" evidence=IEA] [GO:0000077
"DNA damage checkpoint" evidence=IEA] [GO:0003689 "DNA clamp loader
activity" evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 CGD:CAL0003213 GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 HOGENOM:HOG000224152 EMBL:AACQ01000224
RefSeq:XP_710951.1 ProteinModelPortal:Q59ML2 SMR:Q59ML2
STRING:Q59ML2 GeneID:3647440 KEGG:cal:CaO19.3211 Uniprot:Q59ML2
Length = 361
Score = 158 (60.7 bits), Expect = 6.4e-08, P = 6.4e-08
Identities = 56/220 (25%), Positives = 100/220 (45%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + + GQ I ++ ++ +L H LF G G GKT+ LAK +
Sbjct: 28 KYRPDSLEEVKGQQEIVDTVRKFVETGKLPHL-LFYGPSGTGKTSTIIALAKEIY----- 81
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIE---MDAASTRGINEMAQLLEQTIYAPINARY 500
G T+ + D G +D + + ASTR I + T N ++
Sbjct: 82 ---GATNYKNMILELNASDDRG--IDVVRNQIKNFASTRQI-----FTKNTSQTASNNQF 131
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
K+ ++DE +T+ A N++ + +E+ K +F + K+ ++SRC +F +
Sbjct: 132 KLIILDEADAMTNVAQNSLRRVIEKFTKNCRFCILANYSHKLNPALISRCTRFRFTPIDI 191
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSL 600
I + L ++ KEN+ A++ + + G MR AL++
Sbjct: 192 SAIKDRLNTVIIKENVNISPEAIDALLKLSNGDMRRALNV 231
>TIGR_CMR|SPO_2741 [details] [associations]
symbol:SPO_2741 "DNA polymerase III, delta prime subunit,
putative" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR003593 SMART:SM00382
GO:GO:0000166 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0017111
KO:K02341 HOGENOM:HOG000142449 RefSeq:YP_167948.1
ProteinModelPortal:Q5LPV8 GeneID:3194106 KEGG:sil:SPO2741
PATRIC:23378901 OMA:NLDRKQT ProtClustDB:PRK07471 Uniprot:Q5LPV8
Length = 373
Score = 158 (60.7 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 58/230 (25%), Positives = 100/230 (43%)
Query: 387 PSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNG 446
P L GQ+ ++ ++A RLHH +L TG GVGK T++ +A+ L +
Sbjct: 17 PRETPRLFGQDAAEQAFLSAYGSDRLHHGWLLTGPEGVGKATLAWRIARFLLATPPQSDD 76
Query: 447 GITSQPCGKCSVCVKIDNGC---FMDYIEMD-AASTRGINEMAQLLEQTIYAPIN--ARY 500
G+ P ++ + ++ E AA TR +N+ +L + + + R+
Sbjct: 77 GLFGAPPPPDTLDIDPEHPVARRMQAGAEPGLAAITRSLNDQGRLRAEIVVEDVRKLGRF 136
Query: 501 ----------KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
++ ++D + A NA+LK LEEPP +L + +P ++ T+ SRC
Sbjct: 137 FGLSAADGGRRVVIVDSADEMNTSAANALLKMLEEPPARTTLLLVSHQPSRLLPTIRSRC 196
Query: 551 IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSL 600
L + D+ + L + E +L A A GS+ AL L
Sbjct: 197 RTLRLTPLSPADMQS----ALEQAGAGTEVMPEHLAAL-ASGSVGRALRL 241
>ZFIN|ZDB-GENE-040907-1 [details] [associations]
symbol:rfc5 "replication factor C (activator 1) 5"
species:7955 "Danio rerio" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0060041 "retina development in camera-type eye" evidence=IMP]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
ZFIN:ZDB-GENE-040907-1 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0060041 KO:K10756 GO:GO:0017111 SUPFAM:SSF48019
HOVERGEN:HBG002053 Pfam:PF08542 GeneTree:ENSGT00550000075072
OMA:ILACARQ CTD:5985 EMBL:CU207223 EMBL:AY648755 IPI:IPI00505315
RefSeq:NP_001003862.1 UniGene:Dr.151058 SMR:Q6DRK4 STRING:Q6DRK4
Ensembl:ENSDART00000051670 GeneID:445385 KEGG:dre:445385
InParanoid:Q6DRK4 NextBio:20832089 Uniprot:Q6DRK4
Length = 334
Score = 130 (50.8 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 35/145 (24%), Positives = 74/145 (51%)
Query: 471 IEMDAASTRGINEM-AQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + +L I + +K+ ++DE +T A NA+ + +E+ +
Sbjct: 82 LELNASDDRGIDVVRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 141
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F L KI + SRC +F + + ++ L +++ +E+I + I T
Sbjct: 142 NTRFCLICNYLSKIIPALQSRCTRFRFGPLSQNQMIPRLEHVIQQESIDITPDGMKAIVT 201
Query: 589 GAQGSMRDALSLTDQAINYSSEKIT 613
+ G MR +L++ Q+ + + K+T
Sbjct: 202 LSTGDMRRSLNIL-QSTHMAYGKVT 225
Score = 75 (31.5 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 21/51 (41%), Positives = 26/51 (50%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP + LI I ++ + + RL H LF G G GKT S ILA
Sbjct: 19 KYRPQTLDDLISHQDILSTIQKFISEDRLPHL-LFYGPPGTGKT--STILA 66
Score = 41 (19.5 bits), Expect = 7.0e-08, Sum P(3) = 7.0e-08
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 747 YNNLKNSKDTKGNLIHAVLT 766
YN + K KG +H +LT
Sbjct: 257 YNQILELKTLKGLALHDILT 276
>SGD|S000005454 [details] [associations]
symbol:RFC4 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0003689 "DNA
clamp loader activity" evidence=IDA] [GO:0007062 "sister chromatid
cohesion" evidence=IPI] [GO:0005663 "DNA replication factor C
complex" evidence=ISS;IDA] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006298 "mismatch repair" evidence=TAS]
[GO:0005634 "nucleus" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031391 "Elg1 RFC-like complex" evidence=IPI]
[GO:0031390 "Ctf18 RFC-like complex" evidence=IPI] [GO:0007049
"cell cycle" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0031389 "Rad17
RFC-like complex" evidence=IDA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 SGD:S000005454 GO:GO:0005524 GO:GO:0005634
EMBL:BK006948 GO:GO:0003677 GO:GO:0006298 EMBL:X83121 GO:GO:0017111
KO:K10755 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 EMBL:U26030 PDB:1SXJ
PDBsum:1SXJ GO:GO:0031389 GeneTree:ENSGT00550000075050
HOGENOM:HOG000224155 Pfam:PF08542 OrthoDB:EOG4PP1RM EMBL:L20502
EMBL:Z74836 PIR:A53845 RefSeq:NP_014547.1 ProteinModelPortal:P40339
SMR:P40339 DIP:DIP-2530N IntAct:P40339 MINT:MINT-540691
STRING:P40339 PaxDb:P40339 PeptideAtlas:P40339 EnsemblFungi:YOL094C
GeneID:854059 KEGG:sce:YOL094C CYGD:YOL094c OMA:TMELYSN
EvolutionaryTrace:P40339 NextBio:975656 Genevestigator:P40339
GermOnline:YOL094C Uniprot:P40339
Length = 323
Score = 156 (60.0 bits), Expect = 8.0e-08, P = 8.0e-08
Identities = 50/185 (27%), Positives = 85/185 (45%)
Query: 424 VG-KTTISRI--LAKCLNC--IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAST 478
VG K TI R+ +AK N + I G GI C + +E++A+
Sbjct: 24 VGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDD 83
Query: 479 RGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFIL 534
RGI N++ ++ ++ P ++KI ++DE +T A A+ +T+E +F
Sbjct: 84 RGIDVVRNQIKHFAQKKLHLP-PGKHKIVILDEADSMTAGAQQALRRTMELYSNSTRFAF 142
Query: 535 ATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSM 594
A + KI + SRC K+ D++ L I+ E++K+ L I A+G M
Sbjct: 143 ACNQSNKIIEPLQSRCAILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDM 202
Query: 595 RDALS 599
R A++
Sbjct: 203 RQAIN 207
>TAIR|locus:2015233 [details] [associations]
symbol:RFC2 "replication factor C 2" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISM]
[GO:0005663 "DNA replication factor C complex" evidence=ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=ISS] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0003677
GO:GO:0006260 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 EMBL:AC010795 HOGENOM:HOG000224155 Pfam:PF08542
OMA:TMELYSN HSSP:Q8U4J3 EMBL:BT031353 IPI:IPI00535046 PIR:B96657
RefSeq:NP_176504.1 UniGene:At.36170 ProteinModelPortal:Q9CAM7
SMR:Q9CAM7 STRING:Q9CAM7 PaxDb:Q9CAM7 PRIDE:Q9CAM7
EnsemblPlants:AT1G63160.1 GeneID:842620 KEGG:ath:AT1G63160
TAIR:At1g63160 InParanoid:Q9CAM7 PhylomeDB:Q9CAM7
ProtClustDB:PLN03025 Genevestigator:Q9CAM7 Uniprot:Q9CAM7
Length = 333
Score = 143 (55.4 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 44/194 (22%), Positives = 88/194 (45%)
Query: 471 IEMDAASTRGI----NEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+E++A+ RGI N++ ++ + P R+K+ ++DE +T A A+ +T+E
Sbjct: 82 LELNASDDRGIDVVRNKIKMFAQKKVTLP-PGRHKVVILDEADSMTSGAQQALRRTIEIY 140
Query: 527 PKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLI 586
+F LA KI + SRC ++ I+ L ++ E + + L I
Sbjct: 141 SNSTRFALACNTSAKIIEPIQSRCALVRFSRLSDQQILGRLLVVVAAEKVPYVPEGLEAI 200
Query: 587 ATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQ-DGNLIL 645
A G MR AL+ QA +S + + + + + DQ + + + + + + +
Sbjct: 201 IFTADGDMRQALNNL-QA-TFSG--FSFVNQENVFKVCDQPHPLHVKNIVRNVLESKFDI 256
Query: 646 SIANKIEIYNLSYS 659
+ ++Y+L YS
Sbjct: 257 ACDGLKQLYDLGYS 270
Score = 57 (25.1 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 19/59 (32%), Positives = 30/59 (50%)
Query: 384 KYRPSNFNTLIG-QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
KYRPS ++G ++ +S+ + A D + + +G G GKTT ILA +G
Sbjct: 20 KYRPSKVVDIVGNEDAVSRLQVIARDGNMPN--LILSGPPGTGKTT--SILALAHELLG 74
Score = 43 (20.2 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 12/41 (29%), Positives = 21/41 (51%)
Query: 22 EKQRQNNNIELIASENYTS-LAVMEAQGTLLTNKYAEGYPG 61
EK R + ++++ +E+ S L V+ G + N G PG
Sbjct: 19 EKYRPSKVVDIVGNEDAVSRLQVIARDGNM-PNLILSGPPG 58
>ASPGD|ASPL0000039105 [details] [associations]
symbol:AN2969 species:162425 "Emericella nidulans"
[GO:0005524 "ATP binding" evidence=IEA] [GO:0033314 "mitotic DNA
replication checkpoint" evidence=IEA] [GO:0006272 "leading strand
elongation" evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] [GO:0003689 "DNA clamp loader activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0031390 "Ctf18 RFC-like
complex" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IEA] [GO:0031389
"Rad17 RFC-like complex" evidence=IEA] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
EMBL:BN001306 GO:GO:0017111 SUPFAM:SSF48019 Pfam:PF08542
OMA:QQLSQNC EnsemblFungi:CADANIAT00010111 Uniprot:C8VJ05
Length = 387
Score = 154 (59.3 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 51/221 (23%), Positives = 96/221 (43%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + + Q+H +K L L L H LF G G GKT+ LAK L +
Sbjct: 39 KYRPKTLDDVAAQDHTTKVLQRTLQASNLPHM-LFYGPPGTGKTSTILALAKSLFGPALY 97
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIY 503
+ + + + + + + + + G++ A+ E+ P +KI
Sbjct: 98 RSRILELNASDERGIGIVREK--VKGFARVQLSHPTGLD--AEYFEKYPCPP----FKII 149
Query: 504 VIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI 563
++DE +T A +A+ +T+E+ + +F L +I + SRC +F K + +
Sbjct: 150 ILDEADSMTQDAQSALRRTMEQYSRITRFCLVCNYVTRIIEPLASRCSKFRFKPLDNSAA 209
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQA 604
+ L I E + E ++ + + + G +R A++ A
Sbjct: 210 GDRLAQIAQLEKLSLENGVVDKLISCSDGDLRRAITYLQSA 250
>UNIPROTKB|F1NIY0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917
EMBL:AADN02020726 IPI:IPI00574772 Ensembl:ENSGALT00000014162
ArrayExpress:F1NIY0 Uniprot:F1NIY0
Length = 359
Score = 151 (58.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 62/278 (22%), Positives = 119/278 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP N + + Q+ + L +L+ L + LF G G GKT S ILA G +
Sbjct: 41 KYRPKNVDEVAFQDEVVAVLKKSLEGADLPNL-LFYGPPGTGKT--STILAAARELFGPE 97
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIY 503
+ +++ + ++ A+ +R + + P +KI
Sbjct: 98 LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRA--------DGKVCPP----FKIV 145
Query: 504 VIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI 563
++DE +T A A+ +T+E+ K +F L +I + SRC +F K +
Sbjct: 146 ILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQ 205
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEK-ITLNSMQEMLS 622
L + KEN+K + A++ + + G +R A++ A K IT ++ E+
Sbjct: 206 QQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAG 265
Query: 623 IIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSI 660
+I ++ + +L A + + ++A + N Y++
Sbjct: 266 VIPRETIDGLLSACSSGSFEKLETVAKNL--INEGYAV 301
>UNIPROTKB|F1NEW1 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0017111 "nucleoside-triphosphatase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 GeneTree:ENSGT00550000074917 OMA:QQLSQNC
EMBL:AADN02020726 IPI:IPI00819051 PRIDE:F1NEW1
Ensembl:ENSGALT00000039711 ArrayExpress:F1NEW1 Uniprot:F1NEW1
Length = 362
Score = 151 (58.2 bits), Expect = 3.8e-07, P = 3.8e-07
Identities = 62/278 (22%), Positives = 119/278 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP N + + Q+ + L +L+ L + LF G G GKT S ILA G +
Sbjct: 41 KYRPKNVDEVAFQDEVVAVLKKSLEGADLPNL-LFYGPPGTGKT--STILAAARELFGPE 97
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIY 503
+ +++ + ++ A+ +R + + P +KI
Sbjct: 98 LFRQRVLELNASDERGIQVIREKVKAFAQLTASGSRA--------DGKVCPP----FKIV 145
Query: 504 VIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI 563
++DE +T A A+ +T+E+ K +F L +I + SRC +F K +
Sbjct: 146 ILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYISRIIEPLTSRCSKFRFKPLSDKIQ 205
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEK-ITLNSMQEMLS 622
L + KEN+K + A++ + + G +R A++ A K IT ++ E+
Sbjct: 206 QQRLLDVSEKENVKITSEAVSYLVKVSDGDLRKAITYLQSATRLMGGKEITEKTVTEIAG 265
Query: 623 IIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSI 660
+I ++ + +L A + + ++A + N Y++
Sbjct: 266 VIPRETIDGLLSACSSGSFEKLETVAKNL--INEGYAV 301
>ZFIN|ZDB-GENE-040824-3 [details] [associations]
symbol:rfc4 "replication factor C (activator 1) 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0060041 "retina development in
camera-type eye" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 InterPro:IPR008921 Pfam:PF00004 SMART:SM00382
InterPro:IPR013748 ZFIN:ZDB-GENE-040824-3 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0060041 GO:GO:0017111 KO:K10755
eggNOG:COG0470 SUPFAM:SSF48019 HOVERGEN:HBG002053 Pfam:PF08542
CTD:5984 HOGENOM:HOG000224154 OMA:ICFRGTF OrthoDB:EOG4Q58PN
EMBL:AY648805 IPI:IPI00506924 RefSeq:NP_999902.2 UniGene:Dr.77554
ProteinModelPortal:Q6DRF4 STRING:Q6DRF4 PRIDE:Q6DRF4 GeneID:406435
KEGG:dre:406435 NextBio:20818031 ArrayExpress:Q6DRF4 Bgee:Q6DRF4
Uniprot:Q6DRF4
Length = 358
Score = 150 (57.9 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 58/251 (23%), Positives = 107/251 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + + Q + L +L+ L + LF G G GKT S ILA G D
Sbjct: 38 KYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKT--STILAAARELYGPD 94
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIY 503
+ +++ + ++ A TR + P +KI
Sbjct: 95 LYRQRVLELNASDERGIQVVREKVKRFAQLTVAGTRPDGKTCP--------P----FKII 142
Query: 504 VIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDI 563
++DE +T A A+ +T+E+ + +F L +I + SRC +F K + +
Sbjct: 143 ILDEADSMTSAAQAALRRTMEKESRTTRFCLICNYVSRIIEPLTSRCSKFRFKPLANDVQ 202
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEK-ITLNSMQEMLS 622
+ I KEN+K+ T ++ + ++G +R A++ +SE+ IT ++ E+
Sbjct: 203 QERILEICRKENLKYTTEGVDALVRVSEGDLRKAITFLQSGARLNSEREITEQTIIEIAG 262
Query: 623 IIDQKYLIQIL 633
++ K + +L
Sbjct: 263 VVPPKVIQSLL 273
>GENEDB_PFALCIPARUM|PFL2005w [details] [associations]
symbol:PFL2005w "replication factor c subunit 4"
species:5833 "Plasmodium falciparum" [GO:0006260 "DNA replication"
evidence=ISS] [GO:0005663 "DNA replication factor C complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 139 (54.0 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 55/228 (24%), Positives = 104/228 (45%)
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN----EMAQLLEQTIYAPI 496
G G G TS C + + N +E++A+ RGIN + ++ I P
Sbjct: 56 GAPGTGKTTSILCLASEM---LGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLP- 111
Query: 497 NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK 556
++KI ++DEV +T A ++ + +E +F LA + +KI + SRC
Sbjct: 112 PGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYF 171
Query: 557 KMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNS 616
K+ ++ + I + ENIK+ L+ + A G +R +A+N L S
Sbjct: 172 KLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLR-------KAVN------CLQS 218
Query: 617 MQEMLSIIDQKYLIQILDALA-EQDGNLILSIANKI--EIYNLSYSIV 661
L +I+++ ++ I D + E+ NL+ N + ++++YS++
Sbjct: 219 TYAGLEVINKENVLHICDIPSPERIENLLKHCVNSEWKKAHDIAYSMI 266
Score = 57 (25.1 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP + ++G + +L + + + + L G G GKTT LA
Sbjct: 21 KYRPEFLDEVVGNPFVINTLKSIITSGNMPNL-LLAGAPGTGKTTSILCLA 70
>UNIPROTKB|Q8I512 [details] [associations]
symbol:PFL2005w "Replication factor C subunit 4"
species:36329 "Plasmodium falciparum 3D7" [GO:0005663 "DNA
replication factor C complex" evidence=ISS] [GO:0006260 "DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 EMBL:AE014188
GO:GO:0017111 KO:K10755 SUPFAM:SSF48019 GO:GO:0005663
HOGENOM:HOG000224155 OMA:IQCLARI Pfam:PF08542 HSSP:Q8U4J3
RefSeq:XP_001350805.1 ProteinModelPortal:Q8I512
EnsemblProtists:PFL2005w:mRNA GeneID:811453 KEGG:pfa:PFL2005w
EuPathDB:PlasmoDB:PF3D7_1241700 ProtClustDB:CLSZ2733842
Uniprot:Q8I512
Length = 336
Score = 139 (54.0 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 55/228 (24%), Positives = 104/228 (45%)
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN----EMAQLLEQTIYAPI 496
G G G TS C + + N +E++A+ RGIN + ++ I P
Sbjct: 56 GAPGTGKTTSILCLASEM---LGNQAKKAVLELNASDDRGINVIRDRIKSFAKEIISLP- 111
Query: 497 NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK 556
++KI ++DEV +T A ++ + +E +F LA + +KI + SRC
Sbjct: 112 PGKHKIIILDEVDSMTTAAQQSLRRIMELYSDTTRFALACNQSEKIIDALQSRCAIIRYF 171
Query: 557 KMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNS 616
K+ ++ + I + ENIK+ L+ + A G +R +A+N L S
Sbjct: 172 KLSDDQVLKRILKICDLENIKYTDDGLDALTFIADGDLR-------KAVN------CLQS 218
Query: 617 MQEMLSIIDQKYLIQILDALA-EQDGNLILSIANKI--EIYNLSYSIV 661
L +I+++ ++ I D + E+ NL+ N + ++++YS++
Sbjct: 219 TYAGLEVINKENVLHICDIPSPERIENLLKHCVNSEWKKAHDIAYSMI 266
Score = 57 (25.1 bits), Expect = 4.9e-07, Sum P(2) = 4.9e-07
Identities = 15/51 (29%), Positives = 24/51 (47%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
KYRP + ++G + +L + + + + L G G GKTT LA
Sbjct: 21 KYRPEFLDEVVGNPFVINTLKSIITSGNMPNL-LLAGAPGTGKTTSILCLA 70
>UNIPROTKB|E7EWX0 [details] [associations]
symbol:MTO1 "Protein MTO1 homolog, mitochondrial"
species:9606 "Homo sapiens" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR002218 Pfam:PF01134 GO:GO:0050660
GO:GO:0008033 EMBL:AL603910 HGNC:HGNC:19261 ChiTaRS:MTO1
IPI:IPI01014419 ProteinModelPortal:E7EWX0 SMR:E7EWX0
Ensembl:ENST00000521032 UCSC:uc003phc.1 ArrayExpress:E7EWX0
Bgee:E7EWX0 Uniprot:E7EWX0
Length = 110
Score = 129 (50.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ + D+SG+ +++LN KG AV RAQ+DR LYKQ ++
Sbjct: 12 KGHLMREV----DALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKE 67
Query: 817 LENQLNLYLFQEEVDDLII 835
+ N L + + V+DLI+
Sbjct: 68 ILNTPLLTVQEGAVEDLIL 86
>UNIPROTKB|E9PHR8 [details] [associations]
symbol:MTO1 "Protein MTO1 homolog, mitochondrial"
species:9606 "Homo sapiens" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR002218 Pfam:PF01134 GO:GO:0050660
GO:GO:0008033 EMBL:AL603910 HGNC:HGNC:19261 ChiTaRS:MTO1
IPI:IPI01013990 ProteinModelPortal:E9PHR8 SMR:E9PHR8
Ensembl:ENST00000442897 ArrayExpress:E9PHR8 Bgee:E9PHR8
Uniprot:E9PHR8
Length = 118
Score = 129 (50.5 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ + D+SG+ +++LN KG AV RAQ+DR LYKQ ++
Sbjct: 12 KGHLMREV----DALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKE 67
Query: 817 LENQLNLYLFQEEVDDLII 835
+ N L + + V+DLI+
Sbjct: 68 ILNTPLLTVQEGAVEDLIL 86
>UNIPROTKB|Q720E5 [details] [associations]
symbol:trmFO
"Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO" species:265669 "Listeria monocytogenes serotype 4b str.
F2365" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
"biological_process" evidence=ND] HAMAP:MF_01037 InterPro:IPR002218
InterPro:IPR004417 Pfam:PF01134 GO:GO:0005737 GO:GO:0050660
GO:GO:0008033 EMBL:AE017262 GenomeReviews:AE017262_GR
InterPro:IPR020595 PROSITE:PS01280 PROSITE:PS01281 eggNOG:COG1206
HOGENOM:HOG000252054 KO:K04094 OMA:RFAGQIT ProtClustDB:PRK05335
GO:GO:0047151 TIGRFAMs:TIGR00137 RefSeq:YP_013892.1
ProteinModelPortal:Q720E5 STRING:Q720E5 GeneID:2798171
KEGG:lmf:LMOf2365_1294 PATRIC:20323821 Uniprot:Q720E5
Length = 434
Score = 151 (58.2 bits), Expect = 5.6e-07, P = 5.6e-07
Identities = 34/90 (37%), Positives = 52/90 (57%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 1075
G T L + Q + I G++NA I+R G + N P L+ + + K + LFFAG
Sbjct: 278 GFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLFFAG 337
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRD 1105
Q+ G GY E+A+ GL AG+NAA F ++++
Sbjct: 338 QMTGVEGYVESAASGLAAGINAANFVEEKE 367
>UNIPROTKB|P43090 [details] [associations]
symbol:alas2 "5-aminolevulinate synthase,
erythroid-specific, mitochondrial" species:8068 "Opsanus tau"
[GO:0001666 "response to hypoxia" evidence=ISS] [GO:0003870
"5-aminolevulinate synthase activity" evidence=ISS] [GO:0005743
"mitochondrial inner membrane" evidence=ISS] InterPro:IPR001917
InterPro:IPR004839 InterPro:IPR010961 InterPro:IPR015118
InterPro:IPR015421 InterPro:IPR015422 Pfam:PF00155 Pfam:PF09029
PROSITE:PS00599 UniPathway:UPA00251 GO:GO:0030170
Gene3D:3.40.640.10 Gene3D:3.90.1150.10 InterPro:IPR015424
SUPFAM:SSF53383 GO:GO:0005743 GO:GO:0005759 GO:GO:0001666
GO:GO:0006782 GO:GO:0003870 HOVERGEN:HBG005954 TIGRFAMs:TIGR01821
EMBL:L02632 ProteinModelPortal:P43090 SMR:P43090 Uniprot:P43090
Length = 582
Score = 151 (58.2 bits), Expect = 9.2e-07, P = 9.2e-07
Identities = 84/344 (24%), Positives = 144/344 (41%)
Query: 25 RQNNNIELIASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGC-KFIDLIEKIAI 79
RQ + + + S +Y ++ V+EA +L ++ G G R G K+ +EK
Sbjct: 181 RQGSQVSVWCSNDYLGMSRHPRVLEAIREVL-ERHGAGAGGTRNISGTSKYHVTLEK--- 236
Query: 80 NRLKKIFNAEAANVQPHSGSQANQAVFFSVLN--PGDTIMGMSLQEGGHLTHGMMLNMSG 137
L + +AA V S AN + F++ PG I G H + + SG
Sbjct: 237 -ELAHLHQKDAALVFS-SCFVANDSTLFTLAKMLPGCHIYS---DAGNHASMIQGIRNSG 291
Query: 138 KWFNSICYGLNKKEKIDYKKVEYLAKKNKPKL--IIAGASAYSQ---YIDFERFYHIAKN 192
+ N D + +E L +++ PK I+A + +S E +A
Sbjct: 292 A--KRFIFRHN-----DSRHLEELLQQSDPKTPKIVAFETVHSMDGAICPLEELCDVAHR 344
Query: 193 INSYFMVDMAHYAGLIAA-----GEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKK 247
+ VD H GL A GE N + D ++ T K+ G GG++
Sbjct: 345 HGALTFVDEVHAVGLYGAHGAGVGERDNVMHKIDIVSGTLGKAF-GCVGGYVASSAALVD 403
Query: 248 IINSAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKILDQRGIRI 306
+ S I L +I A A+ VLK P+ ++ ++ +N K + ++L +G+ +
Sbjct: 404 TVRSFAAGFIFTTSLPPMILAGALESVRVLKSPEGQLLRRAHQRNVKYMRQLLMDKGLPV 463
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDP 350
V+ SHII + + N ++ K+ +S+LE NI + P P
Sbjct: 464 VN--CPSHIIPIRVGNAELNTKVCDSLLEKHNIYVQAINYPTVP 505
>WB|WBGene00004338 [details] [associations]
symbol:rfc-2 species:6239 "Caenorhabditis elegans"
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0009792 GO:GO:0003677 GO:GO:0006260
GO:GO:0040011 GO:GO:0000003 GO:GO:0017111 KO:K10755 eggNOG:COG0470
SUPFAM:SSF48019 GeneTree:ENSGT00550000075050 HOGENOM:HOG000224155
OMA:IQCLARI Pfam:PF08542 EMBL:FO080408 PIR:D88638
RefSeq:NP_500069.1 HSSP:Q8U4J3 ProteinModelPortal:O44175 SMR:O44175
DIP:DIP-26649N IntAct:O44175 MINT:MINT-1044481 STRING:O44175
PaxDb:O44175 EnsemblMetazoa:F58F6.4 GeneID:176946
KEGG:cel:CELE_F58F6.4 UCSC:F58F6.4 CTD:176946 WormBase:F58F6.4
InParanoid:O44175 NextBio:894694 Uniprot:O44175
Length = 334
Score = 154 (59.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 52/204 (25%), Positives = 93/204 (45%)
Query: 437 LNCIGIDGN--GGITSQP--CGKCSVCVKIDNGCFMDYI-----EMDAASTRGINEMAQL 487
L IG +GN + S P CGK + + D + E++A+ RGI+ +
Sbjct: 34 LKVIGHEGNVPNIVLSGPPGCGKTTSVWALARELLGDKVKEAVLELNASDERGIDVVRHR 93
Query: 488 LE---QTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPI 544
++ QT R+KI ++DE +T A A+ +T+E K +F LA + +KI
Sbjct: 94 IKTFAQTKVTLPEGRHKIIILDEADSMTDGAQQALRRTMEMYTKTTRFALACNQSEKIIE 153
Query: 545 TVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQA 604
+ SRC K+ ++ + + E + ++ L I AQG MR AL+
Sbjct: 154 PIQSRCALLRYTKLSPVQLLTRVKEVAKAEKVNYDDGGLEAILFTAQGDMRQALNNLQAT 213
Query: 605 INYSSEKITLNSMQEMLSIIDQKY 628
+N + E + + + +L + D+ +
Sbjct: 214 VN-AYELV---NKENVLKVCDEPH 233
Score = 37 (18.1 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 6/18 (33%), Positives = 13/18 (72%)
Query: 331 ESILESANIICNKNSIPN 348
E+I+E +I ++ ++PN
Sbjct: 28 ENIVERLKVIGHEGNVPN 45
>POMBASE|SPBC83.14c [details] [associations]
symbol:rfc5 "DNA replication factor C complex subunit
Rfc5 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000790 "nuclear chromatin" evidence=IC] [GO:0003689 "DNA clamp
loader activity" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006272 "leading strand
elongation" evidence=ISO] [GO:0006281 "DNA repair" evidence=ISO]
[GO:0031389 "Rad17 RFC-like complex" evidence=TAS] [GO:0031390
"Ctf18 RFC-like complex" evidence=TAS] [GO:0031391 "Elg1 RFC-like
complex" evidence=IDA] [GO:0043596 "nuclear replication fork"
evidence=IC] InterPro:IPR008921 InterPro:IPR013748
PomBase:SPBC83.14c GO:GO:0005829 EMBL:CU329671 GO:GO:0006281
GenomeReviews:CU329671_GR GO:GO:0000790 GO:GO:0043596 KO:K10756
eggNOG:COG0470 GO:GO:0003689 GO:GO:0031390 GO:GO:0006272
SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391 GO:GO:0031389
Pfam:PF08542 HOGENOM:HOG000224153 OMA:TRIMCLL PIR:T40703
RefSeq:NP_595646.1 ProteinModelPortal:O94697 STRING:O94697
EnsemblFungi:SPBC83.14c.1 GeneID:2540215 KEGG:spo:SPBC83.14c
OrthoDB:EOG4R273P NextBio:20801347 Uniprot:O94697
Length = 358
Score = 146 (56.5 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 83/365 (22%), Positives = 154/365 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG-- 441
+YRP +L +S+ LI+ H ++ G G GK T R++A G
Sbjct: 6 QYRPKTLASLDYHKQLSERLISLSSTNEFPHLLVY-GPSGAGKKT--RVVAILRELYGPG 62
Query: 442 -----IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINE--MAQLLE---QT 491
ID +T P K + + I + + ++E+ + + M +LL+ Q+
Sbjct: 63 SEKLKIDQRTFLT--PSSK-KLQINIVSS--LHHLEITPSDVGNYDRVIMQELLKDVAQS 117
Query: 492 IYAPINAR--YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSR 549
+ A+ +K+ VI+ LT A A+ +T+E+ I+ IL KI + SR
Sbjct: 118 AQVDLQAKKIFKVVVINVADELTRDAQAALRRTMEKYSNNIRLILIANSTSKIIEPIRSR 177
Query: 550 CIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS 609
+ + +I+ + IL + ++ S LN IA ++R A+ L + S
Sbjct: 178 TLMVRVAAPTPEEIILVMSKILTAQGLEAPDSLLNNIANNCDRNLRKAILLLETVHAKSP 237
Query: 610 EKITLNSMQEMLSIID-QKYLIQILDA-LAEQDGNLILSIANKIEIYNL-SYSI----VL 662
L L + D Q ++ Q+ D+ L EQ IL++ + + Y+L S+ I +L
Sbjct: 238 GNKQLIDTGAQLPLPDWQTFIQQVGDSMLQEQSPARILAVRSML--YDLLSHCIPPTTIL 295
Query: 663 KDXXXXXXXXXXXXXXPEILIKDSPNYNEIIQLSKK--FNIEQIQLFYQISIHGRNELEL 720
K+ P LI+ + NY ++ K F++E ++ + ++ +L +
Sbjct: 296 KELLSFFLSKVDTKLHP-YLIQAAANYEHRTRMGNKSIFHLEAFVAYF-MKVYAMLQLGM 353
Query: 721 APDEY 725
Y
Sbjct: 354 ELPSY 358
>WB|WBGene00004339 [details] [associations]
symbol:rfc-3 species:6239 "Caenorhabditis elegans"
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR003593 InterPro:IPR008921
SMART:SM00382 InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792
GO:GO:0040010 GO:GO:0003677 GO:GO:0006260 GO:GO:0040011
GO:GO:0006974 GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 143 (55.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 62/280 (22%), Positives = 124/280 (44%)
Query: 384 KYRPSNFNTLIGQN-HISKSL-INALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
KYRP + G + HI ++ + L + H LF G G GK T + L + L +G
Sbjct: 7 KYRPKDLLGKDGVDYHIEQANHLKFLSADCMPHL-LFCGPSGAGKKTRIKCLLRELYGVG 65
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI------NEMAQLLEQT--IY 493
++ I + ++I +IEM + GI ++ + + QT I
Sbjct: 66 VEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDV-GIYDRVVVQDLVKEMAQTSQIE 124
Query: 494 APINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553
+ +K+ V+ E LT A + + +T+E+ K +L+ +I + SRCI
Sbjct: 125 STSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIII 184
Query: 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKIT 613
N+ D+ L ++ +E+ + L I ++G++R A+ +T+ A+ +E
Sbjct: 185 NVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTE-ALRMENESGV 243
Query: 614 LNSMQEMLSIIDQKYLIQILDALA--EQDGNLILSIANKI 651
S+ ++ + + + IQ L +Q +++L + ++
Sbjct: 244 AESV--VIPVPEWEIYIQETARLILQKQSSDMLLKVRERL 281
Score = 48 (22.0 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 944 KQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFL 1003
KQ S + E+ + ++ + IF +E + P+ P I +V K H + L
Sbjct: 268 KQSSDMLLKVRERLYELLSRCIPPTVIFKKLLEHLLPKCPPQIAREVVSEAAKFEHRLVL 327
Query: 1004 EPEGI 1008
+ I
Sbjct: 328 GQKAI 332
>UNIPROTKB|Q18547 [details] [associations]
symbol:rfc-3 "Protein RFC-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0009792 GO:GO:0040010
GO:GO:0003677 GO:GO:0006260 GO:GO:0040011 GO:GO:0006974
GO:GO:0040035 KO:K10756 GO:GO:0017111 eggNOG:COG0470
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
HOGENOM:HOG000224153 OMA:TRIMCLL EMBL:Z70307 HSSP:Q8U4J3 PIR:T19856
RefSeq:NP_502517.1 ProteinModelPortal:Q18547 SMR:Q18547
DIP:DIP-27479N IntAct:Q18547 MINT:MINT-228120 STRING:Q18547
PaxDb:Q18547 EnsemblMetazoa:C39E9.13.1 EnsemblMetazoa:C39E9.13.2
GeneID:178259 KEGG:cel:CELE_C39E9.13 UCSC:C39E9.13 CTD:178259
WormBase:C39E9.13 InParanoid:Q18547 NextBio:900398 Uniprot:Q18547
Length = 354
Score = 143 (55.4 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 62/280 (22%), Positives = 124/280 (44%)
Query: 384 KYRPSNFNTLIGQN-HISKSL-INALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
KYRP + G + HI ++ + L + H LF G G GK T + L + L +G
Sbjct: 7 KYRPKDLLGKDGVDYHIEQANHLKFLSADCMPHL-LFCGPSGAGKKTRIKCLLRELYGVG 65
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI------NEMAQLLEQT--IY 493
++ I + ++I +IEM + GI ++ + + QT I
Sbjct: 66 VEKTQLIMKSFTSPSNKKLEIQTVSSNYHIEMTPSDV-GIYDRVVVQDLVKEMAQTSQIE 124
Query: 494 APINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553
+ +K+ V+ E LT A + + +T+E+ K +L+ +I + SRCI
Sbjct: 125 STSQRSFKVVVLCEADSLTRDAQHGLRRTMEKYANNCKIVLSCESLSRIIEPLQSRCIII 184
Query: 554 NLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKIT 613
N+ D+ L ++ +E+ + L I ++G++R A+ +T+ A+ +E
Sbjct: 185 NVPAPTDEDVTKVLRKVIERESFLLPENVLQKIVEKSEGNLRRAILMTE-ALRMENESGV 243
Query: 614 LNSMQEMLSIIDQKYLIQILDALA--EQDGNLILSIANKI 651
S+ ++ + + + IQ L +Q +++L + ++
Sbjct: 244 AESV--VIPVPEWEIYIQETARLILQKQSSDMLLKVRERL 281
Score = 48 (22.0 bits), Expect = 1.8e-06, Sum P(2) = 1.8e-06
Identities = 15/65 (23%), Positives = 27/65 (41%)
Query: 944 KQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFL 1003
KQ S + E+ + ++ + IF +E + P+ P I +V K H + L
Sbjct: 268 KQSSDMLLKVRERLYELLSRCIPPTVIFKKLLEHLLPKCPPQIAREVVSEAAKFEHRLVL 327
Query: 1004 EPEGI 1008
+ I
Sbjct: 328 GQKAI 332
>TIGR_CMR|CBU_0111 [details] [associations]
symbol:CBU_0111 "2-amino-3-ketobutyrate coenzyme A ligase"
species:227377 "Coxiella burnetii RSA 493" [GO:0006567 "threonine
catabolic process" evidence=ISS] [GO:0008890 "glycine
C-acetyltransferase activity" evidence=ISS] InterPro:IPR001917
InterPro:IPR004839 InterPro:IPR011282 InterPro:IPR015421
InterPro:IPR015422 Pfam:PF00155 PROSITE:PS00599 GO:GO:0030170
GO:GO:0009058 Gene3D:3.40.640.10 Gene3D:3.90.1150.10
InterPro:IPR015424 SUPFAM:SSF53383 GO:GO:0016874 EMBL:AE016828
GenomeReviews:AE016828_GR HOGENOM:HOG000221022 KO:K00639
GO:GO:0008890 ProtClustDB:PRK06939 TIGRFAMs:TIGR01822 OMA:GTHEYCD
RefSeq:NP_819161.1 PDB:3TQX PDBsum:3TQX ProteinModelPortal:Q83F40
SMR:Q83F40 PRIDE:Q83F40 GeneID:1207982 KEGG:cbu:CBU_0111
PATRIC:17928907 BioCyc:CBUR227377:GJ7S-117-MONOMER
EvolutionaryTrace:Q83F40 Uniprot:Q83F40
Length = 396
Score = 145 (56.1 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 87/379 (22%), Positives = 156/379 (41%)
Query: 2 IIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEA---QGTLLTNKYAEG 58
+ K+E + P+ EI + EK+ N + NY LA A + +Y G
Sbjct: 20 LYKSERIIT-SPQNAEIKVGEKEVLN-----FCANNYLGLADHPALIKTAQTVVEQYGFG 73
Query: 59 YPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMG 118
R+ G + I K + + + + S AN +F ++L P D I+
Sbjct: 74 MASVRFICGTQ---TIHKELEKDISEFLGTDDT-ILYSSCFDANGGLFETLLGPEDAIIS 129
Query: 119 MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIA-GASAY 177
L + G+ L + ++ Y N ++ K E K + KLI G +
Sbjct: 130 DELNHAS-IIDGIRLCKAQRYR----YKNNAMGDLEAKLKEADEKGARFKLIATDGVFSM 184
Query: 178 SQYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAG-----EYPNPVPFADFITSTTHKSL 231
I D + +A N+ MVD +H G I EY D +T T K+L
Sbjct: 185 DGIIADLKSICDLADKYNALVMVDDSHAVGFIGENGRGTPEYCGVADRVDILTGTLGKAL 244
Query: 232 RGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKN 291
G GG+ K+ + + + P + + VI A ++ E+LK + +KQ+ +N
Sbjct: 245 GGASGGYTSGHKEIIEWLRNRSRPYLFSNTVAPVIVATSLKVLELLKTEGPQLRKQLQEN 304
Query: 292 AKILSKILDQRGIRIVSGGTKSH-IILVDLRNKKITGKIAESILESANIICNKNSIPNDP 350
++ +++ G ++V G +H II V L + ++ +A+ +L+ + + P
Sbjct: 305 SRYFRAGMEKLGFQLVPG---NHPIIPVMLGDAQLATNMADHLLQEGIYVVGFSY----P 357
Query: 351 EKPYFTSGIRLGSSAITTR 369
P + IR+ SA+ T+
Sbjct: 358 VVPMGKARIRVQMSAVHTQ 376
>TIGR_CMR|SPO_1686 [details] [associations]
symbol:SPO_1686 "gid protein" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0003824 "catalytic activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] HAMAP:MF_01037
InterPro:IPR002218 InterPro:IPR004417 Pfam:PF01134 GO:GO:0005737
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0050660 GO:GO:0008033
PROSITE:PS01280 PROSITE:PS01281 eggNOG:COG1206 HOGENOM:HOG000252054
KO:K04094 OMA:RFAGQIT ProtClustDB:PRK05335 GO:GO:0047151
TIGRFAMs:TIGR00137 RefSeq:YP_166925.1 ProteinModelPortal:Q5LST0
GeneID:3193555 KEGG:sil:SPO1686 PATRIC:23376697 Uniprot:Q5LST0
Length = 449
Score = 145 (56.1 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 42/115 (36%), Positives = 61/115 (53%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 1075
G T + + AQ + ++I G++NA+ R G + N P L + + K + FAG
Sbjct: 286 GFQTKMKYGAQTAVFKTIPGLENASFARLGGIHRNTFLNSPTLLDAQMRMKSRPNIRFAG 345
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRD-PWIPGRDQAYLGVLVDDLITKGIQ 1129
QI G GY E+A+ GLLAG AA Q R P +P +D A +G L+ IT G +
Sbjct: 346 QITGVEGYVESAAMGLLAGRLAAAEIQGRALPEVP-QDSA-MGALIHH-ITGGAE 397
>TIGR_CMR|CPS_2757 [details] [associations]
symbol:CPS_2757 "ATPase, AAA family" species:167879
"Colwellia psychrerythraea 34H" [GO:0016887 "ATPase activity"
evidence=ISS] [GO:0019538 "protein metabolic process" evidence=ISS]
InterPro:IPR003593 InterPro:IPR008824 Pfam:PF05496 SMART:SM00382
GO:GO:0000166 GO:GO:0006281 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0006310 GO:GO:0009378 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886
Pfam:PF12002 RefSeq:YP_269469.1 ProteinModelPortal:Q480Q0
SMR:Q480Q0 STRING:Q480Q0 GeneID:3522496 KEGG:cps:CPS_2757
PATRIC:21468551 BioCyc:CPSY167879:GI48-2818-MONOMER Uniprot:Q480Q0
Length = 511
Score = 107 (42.7 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 42/150 (28%), Positives = 66/150 (44%)
Query: 471 IEMDAASTRGINEMAQLLEQT-IYAP---INARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
IE +A T GI E+ +E+ + A N R + +DEVH +A L +E+
Sbjct: 121 IERVSAVTSGIKEIRSAIEKAKLRAQGEGANKRRTVLFVDEVHRFNKSQQDAFLPHIEDG 180
Query: 527 PKYIKFILATTEPQKIPIT--VLSRCIQFNLKKMLHHDIVN------NLCYILNKENIKF 578
I FI ATTE + +LSR + LKK+ D+ +LC + +IK
Sbjct: 181 T--IIFIGATTENPAFELNQALLSRARLYTLKKLTRDDLAQVLQRAISLCEAEQQLSIKL 238
Query: 579 ETSALNLIATGAQGSMRDALSLTDQAINYS 608
A + + G R L+L + ++ S
Sbjct: 239 SVDAKQSLLNRSDGDARRLLNLLENCLDSS 268
Score = 88 (36.0 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 381 LARKYRPSNFNTLIGQNHI---SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
LA K RP +GQ HI L ++++ H + +F G G GKTT++ I+A+
Sbjct: 59 LAAKMRPKTLADYVGQQHILGGDSPLAQSIEQGHCH-SLIFWGPPGSGKTTLAEIIAQHA 117
Query: 438 NCIGIDGNGGITS 450
N I+ +TS
Sbjct: 118 NA-EIERVSAVTS 129
>SGD|S000000291 [details] [associations]
symbol:RFC5 "Subunit of heteropentameric Replication factor C
(RF-C)" species:4932 "Saccharomyces cerevisiae" [GO:0031390 "Ctf18
RFC-like complex" evidence=IPI] [GO:0003689 "DNA clamp loader
activity" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007062 "sister chromatid cohesion"
evidence=IMP;IPI] [GO:0006272 "leading strand elongation"
evidence=IDA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005663 "DNA
replication factor C complex" evidence=IDA;IMP] [GO:0006298
"mismatch repair" evidence=TAS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0031389 "Rad17 RFC-like complex" evidence=IDA]
[GO:0031391 "Elg1 RFC-like complex" evidence=IPI] [GO:0005634
"nucleus" evidence=IEA] [GO:0007049 "cell cycle" evidence=IEA]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 SGD:S000000291 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 EMBL:BK006936 GO:GO:0006298 EMBL:X78993
RefSeq:NP_009644.3 GeneID:852383 KEGG:sce:YBR087W KO:K10756
GO:GO:0017111 eggNOG:COG0470 GO:GO:0031390 GO:GO:0007062
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
EMBL:Z35956 PDB:1SXJ PDBsum:1SXJ GO:GO:0031389 Pfam:PF08542
GeneTree:ENSGT00550000075006 HOGENOM:HOG000224153 OMA:TRIMCLL
OrthoDB:EOG4R273P EMBL:U26031 EMBL:AY693173 PIR:S48257
RefSeq:NP_009648.4 ProteinModelPortal:P38251 SMR:P38251
DIP:DIP-2531N IntAct:P38251 MINT:MINT-480383 STRING:P38251
PaxDb:P38251 PeptideAtlas:P38251 EnsemblFungi:YBR087W GeneID:852387
KEGG:sce:YBR090C CYGD:YBR087w EvolutionaryTrace:P38251
NextBio:971189 Genevestigator:P38251 GermOnline:YBR087W
Uniprot:P38251
Length = 354
Score = 140 (54.3 bits), Expect = 6.0e-06, P = 6.0e-06
Identities = 63/241 (26%), Positives = 103/241 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKR-LHHAYLFTGTRGVGKTT-----ISRILAKCL 437
KYRP + N L ++ L + D+ R L H L+ G G GK T + I +
Sbjct: 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLY-GPNGTGKKTRCMALLESIFGPGV 65
Query: 438 NCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI------NEMAQLLEQT 491
+ ID +T+ K + V + + ++ D + I E+AQ+ EQ
Sbjct: 66 YRLKIDVRQFVTASN-RKLELNV-VSSPYHLEITPSDMGNNDRIVIQELLKEVAQM-EQV 122
Query: 492 IYAP----INARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVL 547
+ + RYK +I+E + LT A A+ +T+E+ K I+ I+ I +
Sbjct: 123 DFQDSKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIK 182
Query: 548 SRCIQFNLKKMLHHDIVNNLCYILNKENIKFETS-ALNLIATGAQGSMR-DALSLTDQAI 605
SRC+ +I L ++ E I+ ET L IA + G++R L L A+
Sbjct: 183 SRCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMAL 242
Query: 606 N 606
N
Sbjct: 243 N 243
>UNIPROTKB|Q9KQI3 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] InterPro:IPR004622
InterPro:IPR008921 InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677
GO:GO:0006260 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408
GO:GO:0003887 GO:GO:0009360 SUPFAM:SSF48019 KO:K02341
TIGRFAMs:TIGR00678 HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1
ProteinModelPortal:Q9KQI3 DNASU:2613394 GeneID:2613394
KEGG:vch:VC2015 PATRIC:20083062 OMA:AMNESAS ProtClustDB:PRK06090
Uniprot:Q9KQI3
Length = 324
Score = 139 (54.0 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470
++ A L + GVG ++ ++A+ L C S+PCG C C + +G D+
Sbjct: 26 KISSATLIQASEGVGVESLVELMARTLMCTSSQ------SEPCGFCHSCGLMQSGNHPDF 79
Query: 471 --IEMD----AASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLE 524
++ + + + I +M ++ +++ + ++ Y++ VI+ + + NA+LKTLE
Sbjct: 80 HVVKPEKIGKSITVEQIRQMNRIAQES--SQLSG-YRLIVIEPADAMNESSANALLKTLE 136
Query: 525 EPPKYIKFILATTEPQKIPITVLSRC 550
EP FIL T+ + + T++SRC
Sbjct: 137 EPAPNCLFILVTSRIKHLLPTIVSRC 162
>TIGR_CMR|VC_2015 [details] [associations]
symbol:VC_2015 "DNA polymerase III, delta prime subunit"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 InterPro:IPR008921
InterPro:IPR015199 Pfam:PF09115 GO:GO:0003677 GO:GO:0006260
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008408 GO:GO:0003887
GO:GO:0009360 SUPFAM:SSF48019 KO:K02341 TIGRFAMs:TIGR00678
HSSP:P28631 PIR:H82127 RefSeq:NP_231649.1 ProteinModelPortal:Q9KQI3
DNASU:2613394 GeneID:2613394 KEGG:vch:VC2015 PATRIC:20083062
OMA:AMNESAS ProtClustDB:PRK06090 Uniprot:Q9KQI3
Length = 324
Score = 139 (54.0 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDY 470
++ A L + GVG ++ ++A+ L C S+PCG C C + +G D+
Sbjct: 26 KISSATLIQASEGVGVESLVELMARTLMCTSSQ------SEPCGFCHSCGLMQSGNHPDF 79
Query: 471 --IEMD----AASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLE 524
++ + + + I +M ++ +++ + ++ Y++ VI+ + + NA+LKTLE
Sbjct: 80 HVVKPEKIGKSITVEQIRQMNRIAQES--SQLSG-YRLIVIEPADAMNESSANALLKTLE 136
Query: 525 EPPKYIKFILATTEPQKIPITVLSRC 550
EP FIL T+ + + T++SRC
Sbjct: 137 EPAPNCLFILVTSRIKHLLPTIVSRC 162
>UNIPROTKB|Q74A44 [details] [associations]
symbol:trmFO
"Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase
TrmFO" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] HAMAP:MF_01037 InterPro:IPR002218 InterPro:IPR004417
Pfam:PF01134 GO:GO:0005737 GO:GO:0050660 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0008033 InterPro:IPR020595
PROSITE:PS01280 PROSITE:PS01281 eggNOG:COG1206 HOGENOM:HOG000252054
KO:K04094 OMA:RFAGQIT ProtClustDB:PRK05335 GO:GO:0047151
TIGRFAMs:TIGR00137 RefSeq:NP_953593.1 ProteinModelPortal:Q74A44
GeneID:2686108 KEGG:gsu:GSU2547 PATRIC:22027945
BioCyc:GSUL243231:GH27-2524-MONOMER Uniprot:Q74A44
Length = 434
Score = 150 (57.9 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 39/110 (35%), Positives = 55/110 (50%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 1075
G T L + Q + + I G+++A +R G + N P L+ + K FFAG
Sbjct: 279 GFQTKLTWPEQRRVFRMIPGLESAEFVRLGSMHRNTFINAPTLLEPTFRLKGDPRTFFAG 338
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT 1125
QI G GY E+A G LAG+N+A + DP +P A LG LV + T
Sbjct: 339 QITGVEGYVESAGSGFLAGINSARLVRGEDPAVPPPVTA-LGALVAHITT 387
Score = 38 (18.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 804 VDRILYKQAIRFYLENQLNLYLFQEEVDDL 833
VDR L+ + +E + L +EEV +L
Sbjct: 96 VDRELFSSYVTERIEGHPLIELVREEVTEL 125
>TIGR_CMR|GSU_2547 [details] [associations]
symbol:GSU_2547 "gid protein" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] HAMAP:MF_01037
InterPro:IPR002218 InterPro:IPR004417 Pfam:PF01134 GO:GO:0005737
GO:GO:0050660 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0008033
InterPro:IPR020595 PROSITE:PS01280 PROSITE:PS01281 eggNOG:COG1206
HOGENOM:HOG000252054 KO:K04094 OMA:RFAGQIT ProtClustDB:PRK05335
GO:GO:0047151 TIGRFAMs:TIGR00137 RefSeq:NP_953593.1
ProteinModelPortal:Q74A44 GeneID:2686108 KEGG:gsu:GSU2547
PATRIC:22027945 BioCyc:GSUL243231:GH27-2524-MONOMER Uniprot:Q74A44
Length = 434
Score = 150 (57.9 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 39/110 (35%), Positives = 55/110 (50%)
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN-PCNLKSSLETKQIHGLFFAG 1075
G T L + Q + + I G+++A +R G + N P L+ + K FFAG
Sbjct: 279 GFQTKLTWPEQRRVFRMIPGLESAEFVRLGSMHRNTFINAPTLLEPTFRLKGDPRTFFAG 338
Query: 1076 QINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLIT 1125
QI G GY E+A G LAG+N+A + DP +P A LG LV + T
Sbjct: 339 QITGVEGYVESAGSGFLAGINSARLVRGEDPAVPPPVTA-LGALVAHITT 387
Score = 38 (18.4 bits), Expect = 7.4e-06, Sum P(2) = 7.4e-06
Identities = 10/30 (33%), Positives = 16/30 (53%)
Query: 804 VDRILYKQAIRFYLENQLNLYLFQEEVDDL 833
VDR L+ + +E + L +EEV +L
Sbjct: 96 VDRELFSSYVTERIEGHPLIELVREEVTEL 125
>UNIPROTKB|F8W9B4 [details] [associations]
symbol:RFC5 "Replication factor C subunit 5" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] InterPro:IPR008921
InterPro:IPR013748 GO:GO:0003677 GO:GO:0006260 KO:K10756
SUPFAM:SSF48019 Pfam:PF08542 EMBL:AC131159 RefSeq:NP_001123584.1
UniGene:Hs.731908 DNASU:5985 GeneID:5985 KEGG:hsa:5985 CTD:5985
HGNC:HGNC:9973 GenomeRNAi:5985 NextBio:23303 IPI:IPI00908568
ProteinModelPortal:F8W9B4 SMR:F8W9B4 PRIDE:F8W9B4
Ensembl:ENST00000229043 ArrayExpress:F8W9B4 Bgee:F8W9B4
Uniprot:F8W9B4
Length = 255
Score = 136 (52.9 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 41/172 (23%), Positives = 82/172 (47%)
Query: 471 IEMDAASTRGINEM-AQLLEQTIYAPINAR-YKIYVIDEVHMLTHHAFNAMLKTLEEPPK 528
+E++A+ RGI+ + +L I + +K+ ++DE +T A NA+ + +E+ +
Sbjct: 3 LELNASDDRGIDIIRGPILSFASTRTIFKKGFKLVILDEADAMTQDAQNALRRVIEKFTE 62
Query: 529 YIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
+F L KI + SRC +F + +V L +++ +E + + + T
Sbjct: 63 NTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGMKALVT 122
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQD 640
+ G MR AL++ Q+ N + K+T ++ + + ILD + QD
Sbjct: 123 LSSGDMRRALNIL-QSTNMAFGKVTEETVYTCTGHPLKSDIANILDWMLNQD 173
Score = 42 (19.8 bits), Expect = 8.1e-06, Sum P(2) = 8.1e-06
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 747 YNNLKNSKDTKGNLIHAVLT 766
Y N+ K KG +H +LT
Sbjct: 178 YRNITELKTLKGLALHDILT 197
>UNIPROTKB|E7EWI1 [details] [associations]
symbol:MTO1 "Protein MTO1 homolog, mitochondrial"
species:9606 "Homo sapiens" [GO:0008033 "tRNA processing"
evidence=IEA] [GO:0050660 "flavin adenine dinucleotide binding"
evidence=IEA] InterPro:IPR002218 Pfam:PF01134 GO:GO:0050660
GO:GO:0008033 EMBL:AL603910 HGNC:HGNC:19261 ChiTaRS:MTO1
IPI:IPI00893962 ProteinModelPortal:E7EWI1 SMR:E7EWI1
Ensembl:ENST00000415228 ArrayExpress:E7EWI1 Bgee:E7EWI1
Uniprot:E7EWI1
Length = 192
Score = 129 (50.5 bits), Expect = 9.2e-06, P = 9.2e-06
Identities = 31/79 (39%), Positives = 49/79 (62%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+ G+ + D+SG+ +++LN KG AV RAQ+DR LYKQ ++
Sbjct: 86 KGHLMREV----DALDGLCSRICDQSGVHYKVLNRRKGPAVWGLRAQIDRKLYKQNMQKE 141
Query: 817 LENQLNLYLFQEEVDDLII 835
+ N L + + V+DLI+
Sbjct: 142 ILNTPLLTVQEGAVEDLIL 160
>UNIPROTKB|Q3AG11 [details] [associations]
symbol:CHY_0051 "Putative DNA polymerase III, delta prime
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 eggNOG:COG0470
GO:GO:0003887 GO:GO:0009360 KO:K02341 RefSeq:YP_358923.1
ProteinModelPortal:Q3AG11 STRING:Q3AG11 GeneID:3726269
KEGG:chy:CHY_0051 PATRIC:21273299 OMA:FLIHISE
BioCyc:CHYD246194:GJCN-51-MONOMER Uniprot:Q3AG11
Length = 267
Score = 138 (53.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 48/156 (30%), Positives = 76/156 (48%)
Query: 403 LINALDKKRLHHAYLFTGT--RGV---GKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457
+I AL++ +L HAYL T V + T IL K N P +
Sbjct: 5 IIEALNQDKLSHAYLLTSPVLEAVVDFARRTAREILIKSAN------------DPVEAAN 52
Query: 458 VCVKIDNGCFMDYIEM--DAASTRGINEMAQLLEQTIY-APINARYKIYVIDEVHMLTHH 514
+ + G D++ + D +S + I ++ ++L +Y P K+ V++EV +T
Sbjct: 53 L---FEAGTHPDFLWLAPDGSSFK-IWQVNEVLIPKVYLTPQKGSRKVIVLEEVDKMTLD 108
Query: 515 AFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
A NA LKTLEEPP + ++L T P+K+ T+ SRC
Sbjct: 109 AANAFLKTLEEPPAGVTYLLIATMPEKVLPTIHSRC 144
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1169 WKIFEKKREIITKE 1182
W+ F KK E IT+E
Sbjct: 173 WEEFYKKTEKITRE 186
>TIGR_CMR|CHY_0051 [details] [associations]
symbol:CHY_0051 "putative DNA polymerase III, delta prime
subunit" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0006260 "DNA replication" evidence=ISS] [GO:0009360 "DNA
polymerase III complex" evidence=ISS] EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0006260 eggNOG:COG0470
GO:GO:0003887 GO:GO:0009360 KO:K02341 RefSeq:YP_358923.1
ProteinModelPortal:Q3AG11 STRING:Q3AG11 GeneID:3726269
KEGG:chy:CHY_0051 PATRIC:21273299 OMA:FLIHISE
BioCyc:CHYD246194:GJCN-51-MONOMER Uniprot:Q3AG11
Length = 267
Score = 138 (53.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 48/156 (30%), Positives = 76/156 (48%)
Query: 403 LINALDKKRLHHAYLFTGT--RGV---GKTTISRILAKCLNCIGIDGNGGITSQPCGKCS 457
+I AL++ +L HAYL T V + T IL K N P +
Sbjct: 5 IIEALNQDKLSHAYLLTSPVLEAVVDFARRTAREILIKSAN------------DPVEAAN 52
Query: 458 VCVKIDNGCFMDYIEM--DAASTRGINEMAQLLEQTIY-APINARYKIYVIDEVHMLTHH 514
+ + G D++ + D +S + I ++ ++L +Y P K+ V++EV +T
Sbjct: 53 L---FEAGTHPDFLWLAPDGSSFK-IWQVNEVLIPKVYLTPQKGSRKVIVLEEVDKMTLD 108
Query: 515 AFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
A NA LKTLEEPP + ++L T P+K+ T+ SRC
Sbjct: 109 AANAFLKTLEEPPAGVTYLLIATMPEKVLPTIHSRC 144
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 1169 WKIFEKKREIITKE 1182
W+ F KK E IT+E
Sbjct: 173 WEEFYKKTEKITRE 186
>TIGR_CMR|SO_2612 [details] [associations]
symbol:SO_2612 "DNA polymerase III, delta prime subunit"
species:211586 "Shewanella oneidensis MR-1" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=ISS] [GO:0006260
"DNA replication" evidence=ISS] [GO:0009360 "DNA polymerase III
complex" evidence=ISS] InterPro:IPR004622 GO:GO:0006260
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0008408 GO:GO:0003887
KO:K02341 TIGRFAMs:TIGR00678 HSSP:P28631 RefSeq:NP_718197.1
ProteinModelPortal:Q8EDX9 DNASU:1170314 GeneID:1170314
KEGG:son:SO_2612 PATRIC:23524851 HOGENOM:HOG000290789 OMA:SSGHLCA
ProtClustDB:CLSK906797 Uniprot:Q8EDX9
Length = 318
Score = 136 (52.9 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 62/268 (23%), Positives = 117/268 (43%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
++ + L +++ HA L G +S +A+ C GG CG C C
Sbjct: 20 QAFLTQLQTQKVPHAQLVGIDSAYGGELLSVFMARAAMCSQPTHTGG-----CGFCKSCQ 74
Query: 461 KIDNGCFMDYIEMDAASTR-GINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAM 519
D G D+ +++A + ++++ +L + + ++ +I L + NA+
Sbjct: 75 LFDAGNHPDFYQIEADGHQIKVDQIRELCSRLSATAQQSGRRVAIIHHSERLNSASANAL 134
Query: 520 LKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNL---KKMLHHDIVNNLCYILNKENI 576
LKTLEEP K +L + P ++ T+ SRC + K L + + C I +E++
Sbjct: 135 LKTLEEPGKDTLLLLHSDTPARLMATISSRCQRLPFVAPSKTLIKNWLIQQCQI--QEDV 192
Query: 577 KFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDAL 636
T L+++ G ++ A SL + S + L ++ + +L L +
Sbjct: 193 ---TWCLSVVG----GPLKLAESLQSNSTQPSRYQTLLGFRKDWAQSLSSGHLCASLLII 245
Query: 637 AEQDGNLILSIANKIEIYNLSYSIVLKD 664
+EQ I+ A K+ +Y L I+LK+
Sbjct: 246 SEQQ---IID-ALKV-LYLLLRQILLKN 268
>WB|WBGene00004340 [details] [associations]
symbol:rfc-4 species:6239 "Caenorhabditis elegans"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0009378 "four-way
junction helicase activity" evidence=IEA] [GO:0016887 "ATPase
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0051301 "cell division" evidence=IMP] [GO:0000910
"cytokinesis" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0045750 "positive regulation of S
phase of mitotic cell cycle" evidence=IMP] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
GO:GO:0005634 GO:GO:0009792 GO:GO:0040010 GO:GO:0006260
GO:GO:0000003 GO:GO:0000910 GO:GO:0017111 GO:GO:0045750 KO:K10755
eggNOG:COG0470 EMBL:FO080392 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 PIR:T16219 RefSeq:NP_498521.1
ProteinModelPortal:P53016 SMR:P53016 DIP:DIP-24293N IntAct:P53016
MINT:MINT-226482 STRING:P53016 PaxDb:P53016 EnsemblMetazoa:F31E3.3
GeneID:175976 KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976
WormBase:F31E3.3 InParanoid:P53016 OMA:CDLENNL NextBio:890574
Uniprot:P53016
Length = 334
Score = 109 (43.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 33/135 (24%), Positives = 62/135 (45%)
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPIN-------ARYKIYVIDEVHMLTHHAFNAMLKTL 523
++++A+ RGI + Q ++ + + + KI ++DEV +T A AM + +
Sbjct: 83 LDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRVI 142
Query: 524 EEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSAL 583
E+ K +FIL ++ V+SRC +F K + V L I + E L
Sbjct: 143 EDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDEL 202
Query: 584 NLIATGAQGSMRDAL 598
+ ++G +R A+
Sbjct: 203 KQVMEYSEGDLRRAV 217
Score = 72 (30.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKC 436
KYRP + + Q+ + L AL + L H LF G G GKT S LA C
Sbjct: 20 KYRPKTLDDIAYQDEVVTMLKGALQGRDLPHL-LFYGPPGTGKT--SAALAFC 69
>UNIPROTKB|P53016 [details] [associations]
symbol:rfc-4 "Replication factor C subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 GO:GO:0005634 GO:GO:0009792
GO:GO:0040010 GO:GO:0006260 GO:GO:0000003 GO:GO:0000910
GO:GO:0017111 GO:GO:0045750 KO:K10755 eggNOG:COG0470 EMBL:FO080392
HOGENOM:HOG000224154 GeneTree:ENSGT00550000074917 PIR:T16219
RefSeq:NP_498521.1 ProteinModelPortal:P53016 SMR:P53016
DIP:DIP-24293N IntAct:P53016 MINT:MINT-226482 STRING:P53016
PaxDb:P53016 EnsemblMetazoa:F31E3.3 GeneID:175976
KEGG:cel:CELE_F31E3.3 UCSC:F31E3.3 CTD:175976 WormBase:F31E3.3
InParanoid:P53016 OMA:CDLENNL NextBio:890574 Uniprot:P53016
Length = 334
Score = 109 (43.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 33/135 (24%), Positives = 62/135 (45%)
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPIN-------ARYKIYVIDEVHMLTHHAFNAMLKTL 523
++++A+ RGI + Q ++ + + + KI ++DEV +T A AM + +
Sbjct: 83 LDLNASDERGIAVVRQKIQSFSKSSLGHSHREDVLKLKIIILDEVDAMTREAQAAMRRVI 142
Query: 524 EEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSAL 583
E+ K +FIL ++ V+SRC +F K + V L I + E L
Sbjct: 143 EDFSKTTRFILICNYVSRLIPPVVSRCAKFRFKSLPAEIQVQRLRTICDAEGTPMSDDEL 202
Query: 584 NLIATGAQGSMRDAL 598
+ ++G +R A+
Sbjct: 203 KQVMEYSEGDLRRAV 217
Score = 72 (30.4 bits), Expect = 2.8e-05, Sum P(2) = 2.8e-05
Identities = 21/53 (39%), Positives = 26/53 (49%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKC 436
KYRP + + Q+ + L AL + L H LF G G GKT S LA C
Sbjct: 20 KYRPKTLDDIAYQDEVVTMLKGALQGRDLPHL-LFYGPPGTGKT--SAALAFC 69
>UNIPROTKB|P0AAZ4 [details] [associations]
symbol:rarA species:83333 "Escherichia coli K-12"
[GO:0030894 "replisome" evidence=IDA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IGI] [GO:0006310 "DNA recombination" evidence=IGI]
InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004 SMART:SM00382
GO:GO:0005524 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006261 GO:GO:0006310 GO:GO:0017111
GO:GO:0030894 EMBL:D49398 eggNOG:COG2256 HOGENOM:HOG000017623
KO:K07478 ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
EMBL:X05017 PIR:C64828 RefSeq:NP_415412.1 RefSeq:YP_489164.1
ProteinModelPortal:P0AAZ4 SMR:P0AAZ4 DIP:DIP-48151N IntAct:P0AAZ4
MINT:MINT-1224512 PRIDE:P0AAZ4 EnsemblBacteria:EBESCT00000001727
EnsemblBacteria:EBESCT00000016690 GeneID:12930363 GeneID:945505
KEGG:ecj:Y75_p0864 KEGG:eco:b0892 PATRIC:32116995 EchoBASE:EB2553
EcoGene:EG12690 OMA:TTYYLND BioCyc:EcoCyc:EG12690-MONOMER
BioCyc:ECOL316407:JW0875-MONOMER Genevestigator:P0AAZ4
Uniprot:P0AAZ4
Length = 447
Score = 98 (39.6 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 381 LARKYRPSNFNTLIGQNHI---SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
LA + RP N IGQ H+ K L A++ LH L+ G G GKTT++ ++A+
Sbjct: 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILW-GPPGTGKTTLAEVIARYA 74
Query: 438 NCIGIDGNGGITS 450
N ++ +TS
Sbjct: 75 NA-DVERISAVTS 86
Score = 87 (35.7 bits), Expect = 3.1e-05, Sum P(2) = 3.1e-05
Identities = 30/95 (31%), Positives = 46/95 (48%)
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYI 530
+E +A T G+ E+ + +E+ R I +DEVH +A L +E+ I
Sbjct: 78 VERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--I 135
Query: 531 KFILATTE-PQ-KIPITVLSRCIQFNLKKMLHHDI 563
FI ATTE P ++ +LSR + LK + DI
Sbjct: 136 TFIGATTENPSFELNSALLSRARVYLLKSLSTEDI 170
>UNIPROTKB|Q9KSZ8 [details] [associations]
symbol:VC_1108 "Putative uncharacterized protein"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003674 "molecular_function" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0017111 KO:K07478 OMA:HDEPDAF ProtClustDB:PRK13342
InterPro:IPR021886 Pfam:PF12002 HSSP:Q56313 PIR:G82241
RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8 SMR:Q9KSZ8
DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108 PATRIC:20081310
Uniprot:Q9KSZ8
Length = 449
Score = 96 (38.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 48/192 (25%), Positives = 85/192 (44%)
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYI 530
+E +A T G+ E+ +E+ ++ R I +DEVH +A L +E+ +
Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--V 136
Query: 531 KFILATTEPQKIPIT--VLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
FI ATTE + +LSR + L + +I+ L + I L +A
Sbjct: 137 TFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQAL-----HQAIADTERGLGKVAA 191
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSII--DQKYLIQI-LDALAEQDGNLIL 645
++ D L+ + +N +++LN ++ + + D + QI L LAE G +
Sbjct: 192 VFADNVLDRLA---ELVN-GDARMSLNYLELLYDMAREDDQGRKQIDLPLLAEVAGEKVS 247
Query: 646 SIANKIEI-YNL 656
NK +I Y+L
Sbjct: 248 RFDNKGDIWYDL 259
Score = 89 (36.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 25/73 (34%), Positives = 35/73 (47%)
Query: 381 LARKYRPSNFNTLIGQNHI---SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
LA + RP IGQ HI K L AL+ +H L+ G G GKTT++ + A
Sbjct: 17 LAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYA 75
Query: 438 NCIGIDGNGGITS 450
N ++ +TS
Sbjct: 76 NA-EVERVSAVTS 87
>TIGR_CMR|VC_1108 [details] [associations]
symbol:VC_1108 "conserved hypothetical protein" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003674 "molecular_function"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR003593
InterPro:IPR003959 Pfam:PF00004 SMART:SM00382 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0017111 KO:K07478
OMA:HDEPDAF ProtClustDB:PRK13342 InterPro:IPR021886 Pfam:PF12002
HSSP:Q56313 PIR:G82241 RefSeq:NP_230753.1 ProteinModelPortal:Q9KSZ8
SMR:Q9KSZ8 DNASU:2614378 GeneID:2614378 KEGG:vch:VC1108
PATRIC:20081310 Uniprot:Q9KSZ8
Length = 449
Score = 96 (38.9 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 48/192 (25%), Positives = 85/192 (44%)
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYI 530
+E +A T G+ E+ +E+ ++ R I +DEVH +A L +E+ +
Sbjct: 79 VERVSAVTSGVKEIRAAIEKARENKLSGRRTILFVDEVHRFNKSQQDAFLPHIEDGT--V 136
Query: 531 KFILATTEPQKIPIT--VLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT 588
FI ATTE + +LSR + L + +I+ L + I L +A
Sbjct: 137 TFIGATTENPSFELNNALLSRARVYKLTSLNQQEILQAL-----HQAIADTERGLGKVAA 191
Query: 589 GAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSII--DQKYLIQI-LDALAEQDGNLIL 645
++ D L+ + +N +++LN ++ + + D + QI L LAE G +
Sbjct: 192 VFADNVLDRLA---ELVN-GDARMSLNYLELLYDMAREDDQGRKQIDLPLLAEVAGEKVS 247
Query: 646 SIANKIEI-YNL 656
NK +I Y+L
Sbjct: 248 RFDNKGDIWYDL 259
Score = 89 (36.4 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 25/73 (34%), Positives = 35/73 (47%)
Query: 381 LARKYRPSNFNTLIGQNHI---SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
LA + RP IGQ HI K L AL+ +H L+ G G GKTT++ + A
Sbjct: 17 LAARMRPQTVEQYIGQQHILGPGKPLRRALEAGHIHSMILW-GPPGTGKTTLAEVAANYA 75
Query: 438 NCIGIDGNGGITS 450
N ++ +TS
Sbjct: 76 NA-EVERVSAVTS 87
>UNIPROTKB|E2R7L0 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046683 "response to organophosphorus"
evidence=IEA] [GO:0016887 "ATPase activity" evidence=IEA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 GO:GO:0005524 GO:GO:0003677 GO:GO:0006260
GO:GO:0016887 KO:K10756 GO:GO:0046683 SUPFAM:SSF48019 Pfam:PF08542
CTD:5983 GeneTree:ENSGT00550000075006 OMA:TRIMCLL EMBL:AAEX03014212
RefSeq:XP_534500.3 ProteinModelPortal:E2R7L0
Ensembl:ENSCAFT00000010156 GeneID:477308 KEGG:cfa:477308
NextBio:20852824 Uniprot:E2R7L0
Length = 356
Score = 133 (51.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 61/277 (22%), Positives = 119/277 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + L + L N + H ++ G G GK T + + L +G++
Sbjct: 7 KYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVY-GPSGAGKKTRIMCILRELYGVGVE 65
Query: 444 G----NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG--INEMAQLLEQTIYAPIN 497
+ IT+ K + I + ++ DA ++ I EM + + Q+ N
Sbjct: 66 KLRIEHQTITTPSKKKIEIST-IASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETN 124
Query: 498 AR--YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNL 555
++ +K+ ++ EV LT A +A+ +T+E+ + IL K+ + SRC+ +
Sbjct: 125 SQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRV 184
Query: 556 KKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615
DI + L + KE + + + +A + ++R AL L +A T +
Sbjct: 185 PAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL-LMCEACRVQQYPFTAD 243
Query: 616 SMQEMLSIIDQKYLIQILDAL-AEQDGNLILSIANKI 651
QE+ + YL + +A+ +EQ +L + ++
Sbjct: 244 --QEIPETDWEVYLRETANAIVSEQTPQRLLEVRGRL 278
>RGD|1310142 [details] [associations]
symbol:Rfc4 "replication factor C (activator 1) 4" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0005663 "DNA replication factor C complex" evidence=ISO]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA]
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 RGD:1310142
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111 KO:K10755
eggNOG:COG0470 EMBL:CH473999 SUPFAM:SSF48019 HOVERGEN:HBG002053
Pfam:PF08542 CTD:5984 HOGENOM:HOG000224154
GeneTree:ENSGT00550000074917 OrthoDB:EOG4Q58PN EMBL:BC168166
IPI:IPI00370513 RefSeq:NP_001099339.1 UniGene:Rn.17046
STRING:B4F778 Ensembl:ENSRNOT00000002487 GeneID:288003
KEGG:rno:288003 UCSC:RGD:1310142 OMA:INIPHED NextBio:627397
Genevestigator:B4F778 Uniprot:B4F778
Length = 364
Score = 116 (45.9 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 36/164 (21%), Positives = 74/164 (45%)
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPINAR---------YKIYVIDEVHMLTHHAFNAMLK 521
+E++A+ RGI + + ++ ++ +KI ++DE +T A A+ +
Sbjct: 106 LELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRR 165
Query: 522 TLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETS 581
T+E+ K +F L +I + SRC +F K + L I KEN+K
Sbjct: 166 TMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQKRLLDIAEKENVKIGDE 225
Query: 582 ALNLIATGAQGSMRDALSLTDQAINYSSEK-ITLNSMQEMLSII 624
+ + ++G +R A++ A + K I+ + + ++ +I
Sbjct: 226 EIAYLVRISEGDLRKAITFLQSATRLTGGKEISEDVITDIAGVI 269
Score = 64 (27.6 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 29/91 (31%), Positives = 40/91 (43%)
Query: 352 KPYFTSGIRLGSSAITTRGFSELEIIKVV-LARKYRPSNFNTLIGQNHISKSLINALDKK 410
KP T + SSA ++ E + +K V KYRP + + Q + L +L+
Sbjct: 13 KPQLTKERGISSSAGSS---GETKKVKPVPWVEKYRPKCVDEVAFQEEVVAVLKKSLEGA 69
Query: 411 RLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
L + LF G G GKT S ILA G
Sbjct: 70 DLPNL-LFYGPPGTGKT--STILAAARELFG 97
>DICTYBASE|DDB_G0293702 [details] [associations]
symbol:rfc3 "replication factor C subunit 3"
species:44689 "Dictyostelium discoideum" [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003689 "DNA
clamp loader activity" evidence=ISS] [GO:0031391 "Elg1 RFC-like
complex" evidence=ISS] [GO:0031389 "Rad17 RFC-like complex"
evidence=ISS] [GO:0006298 "mismatch repair" evidence=ISS]
[GO:0006272 "leading strand elongation" evidence=ISS] [GO:0005663
"DNA replication factor C complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR003593 InterPro:IPR008921 SMART:SM00382
InterPro:IPR013748 dictyBase:DDB_G0293702 GO:GO:0005634
GenomeReviews:CM000155_GR GO:GO:0000166 GO:GO:0003677 GO:GO:0006298
KO:K10756 GO:GO:0017111 EMBL:AAFI02000218 eggNOG:COG0470
GO:GO:0006272 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0031391
GO:GO:0031389 Pfam:PF08542 OMA:TRIMCLL RefSeq:XP_628996.1
HSSP:P38251 ProteinModelPortal:Q54BN3 STRING:Q54BN3 PRIDE:Q54BN3
EnsemblProtists:DDB0232232 GeneID:8629280 KEGG:ddi:DDB_G0293702
ProtClustDB:CLSZ2429230 Uniprot:Q54BN3
Length = 347
Score = 132 (51.5 bits), Expect = 4.3e-05, P = 4.3e-05
Identities = 62/285 (21%), Positives = 128/285 (44%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTT-ISRILAKCL--NCI 440
KY+P++ + + N IS +L N + H ++ G G GK T I +L + N +
Sbjct: 6 KYKPTSLDKMDYHNDISINLKNMIKSGDFPHLLVY-GPSGAGKKTRILAVLQEIYGPNAL 64
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMA-QLLEQTIYA--PIN 497
+ + P ++ + + + +IE++ + + Q + + I PI+
Sbjct: 65 KLKIDHRTFKHPTSSKNIQITTISSHY--HIEINPGEAGSYDRVVIQTIIKEIAQSPPID 122
Query: 498 A----RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553
+ +KI +++EV L+ A +A+ +T+E+ + + IL K+ + SRC+
Sbjct: 123 SGSLGAFKIVILNEVDKLSKDAQHALRRTMEKYATFCRLILCCDSTAKVIDPIKSRCLGI 182
Query: 554 NLKKMLHHDIVNNLCYILNKENIKFETS-ALNLIATGAQGSMRDALSLTDQAINYSSEKI 612
+ +I L + E + A+N +A + G++R AL L + + +++
Sbjct: 183 RVPAPSQEEIEKVLAKVATAEKFDLPSKLAVN-VAKQSGGNLRYALMLLE---SQKAKQY 238
Query: 613 TLNSMQEMLSIID-QKYLIQILDALAEQDGNLILSIANKIEIYNL 656
S + L ++D + Y+ QI+ E+ LSI ++Y L
Sbjct: 239 PFQSTE--LPLLDWENYISQIVKDCFEEQSPARLSIVRG-KLYEL 280
>UNIPROTKB|C9JZI1 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0006260
"DNA replication" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 GO:GO:0006260 GO:GO:0017111
SUPFAM:SSF48019 EMBL:AC112907 Pfam:PF08542 HOGENOM:HOG000224154
HGNC:HGNC:9972 ChiTaRS:RFC4 IPI:IPI00925945
ProteinModelPortal:C9JZI1 SMR:C9JZI1 STRING:C9JZI1
Ensembl:ENST00000433496 ArrayExpress:C9JZI1 Bgee:C9JZI1
Uniprot:C9JZI1
Length = 336
Score = 122 (48.0 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 40/178 (22%), Positives = 81/178 (45%)
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPINAR---------YKIYVIDEVHMLTHHAFNAMLK 521
+E++A+ RGI + + ++ ++ +KI ++DE +T A A+ +
Sbjct: 106 LELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRR 165
Query: 522 TLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETS 581
T+E+ K +F L +I + SRC +F K + L I KEN+K
Sbjct: 166 TMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDE 225
Query: 582 ALNLIATGAQGSMRDALSLTDQAINYSSEK-ITLNSMQEMLS-IIDQKYLI-QILDAL 636
+ + ++G +R A++ A + K IT + ++ +ID+ + Q+++ L
Sbjct: 226 GIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGDLIDEGHAATQLVNQL 283
Score = 55 (24.4 bits), Expect = 5.9e-05, Sum P(2) = 5.9e-05
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
KYRP + + Q + L +L+ L + LF G G GKT S ILA G
Sbjct: 43 KYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKT--STILAAARELFG 97
>UNIPROTKB|F1RSR4 [details] [associations]
symbol:RFC3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0046683 "response to organophosphorus" evidence=IEA]
[GO:0016887 "ATPase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
GO:GO:0003677 GO:GO:0006260 GO:GO:0016887 GO:GO:0046683
SUPFAM:SSF48019 Pfam:PF08542 GeneTree:ENSGT00550000075006
OMA:TRIMCLL EMBL:AEMK01181220 EMBL:CU076062
Ensembl:ENSSSCT00000010246 Uniprot:F1RSR4
Length = 356
Score = 131 (51.2 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 60/277 (21%), Positives = 119/277 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + L + L N + H ++ G G GK T + + L +G++
Sbjct: 7 KYRPCSLGQLDYHKEQAAQLRNLVQCGDFPHLLVY-GPSGAGKKTRIMCILRELYGVGVE 65
Query: 444 G----NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG--INEMAQLLEQTIYAPIN 497
+ IT+ K + I + ++ DA ++ I EM + + Q+ N
Sbjct: 66 KLRIEHQTITTPSKKKIEIST-IASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETN 124
Query: 498 AR--YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNL 555
++ +K+ ++ EV LT A +A+ +T+E+ + IL K+ + SRC+ +
Sbjct: 125 SQKDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRV 184
Query: 556 KKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615
DI + L + KE + + +A + ++R AL L +A T++
Sbjct: 185 PAPSIEDICHVLSTVCKKEGLSLPSQLARKLAEKSCRNLRKAL-LMCEACRVQQYPFTVD 243
Query: 616 SMQEMLSIIDQKYLIQILDAL-AEQDGNLILSIANKI 651
QE+ + YL + +A+ ++Q +L + ++
Sbjct: 244 --QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRL 278
>UNIPROTKB|P35249 [details] [associations]
symbol:RFC4 "Replication factor C subunit 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005663 "DNA replication factor C
complex" evidence=IDA] [GO:0048015 "phosphatidylinositol-mediated
signaling" evidence=NAS] [GO:0006260 "DNA replication"
evidence=NAS;TAS] [GO:0006281 "DNA repair" evidence=NAS;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0006271 "DNA strand elongation
involved in DNA replication" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0000075 "cell cycle checkpoint"
evidence=TAS] [GO:0000084 "S phase of mitotic cell cycle"
evidence=TAS] [GO:0000278 "mitotic cell cycle" evidence=TAS]
[GO:0000722 "telomere maintenance via recombination" evidence=TAS]
[GO:0000723 "telomere maintenance" evidence=TAS] Reactome:REACT_216
InterPro:IPR003593 InterPro:IPR003959 InterPro:IPR008921
Pfam:PF00004 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0003677 EMBL:CH471052
GO:GO:0017111 GO:GO:0048015 GO:GO:0000084 KO:K10755 eggNOG:COG0470
GO:GO:0000075 GO:GO:0000722 Reactome:REACT_383 GO:GO:0006283
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 HOVERGEN:HBG002053 Pfam:PF08542 CTD:5984
HOGENOM:HOG000224154 EMBL:M87339 EMBL:AF538718 EMBL:BT006987
EMBL:CR536561 EMBL:BC017452 EMBL:BC024022 IPI:IPI00017381
PIR:A45253 RefSeq:NP_002907.1 RefSeq:NP_853551.1 UniGene:Hs.732098
ProteinModelPortal:P35249 SMR:P35249 DIP:DIP-24267N IntAct:P35249
MINT:MINT-1485723 STRING:P35249 PhosphoSite:P35249 DMDM:1703052
PaxDb:P35249 PeptideAtlas:P35249 PRIDE:P35249 DNASU:5984
Ensembl:ENST00000296273 Ensembl:ENST00000392481 GeneID:5984
KEGG:hsa:5984 UCSC:uc003fqz.3 GeneCards:GC03M186507 HGNC:HGNC:9972
HPA:CAB004557 MIM:102577 neXtProt:NX_P35249 PharmGKB:PA34341
InParanoid:P35249 OMA:QQLSQNC PhylomeDB:P35249 ChiTaRS:RFC4
GenomeRNAi:5984 NextBio:23297 ArrayExpress:P35249 Bgee:P35249
CleanEx:HS_RFC4 Genevestigator:P35249 GermOnline:ENSG00000163918
Uniprot:P35249
Length = 363
Score = 123 (48.4 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 37/164 (22%), Positives = 73/164 (44%)
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPINAR---------YKIYVIDEVHMLTHHAFNAMLK 521
+E++A+ RGI + + ++ ++ +KI ++DE +T A A+ +
Sbjct: 106 LELNASDERGIQVVREKVKNFAQLTVSGSRSDGKPCPPFKIVILDEADSMTSAAQAALRR 165
Query: 522 TLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETS 581
T+E+ K +F L +I + SRC +F K + L I KEN+K
Sbjct: 166 TMEKESKTTRFCLICNYVSRIIEPLTSRCSKFRFKPLSDKIQQQRLLDIAKKENVKISDE 225
Query: 582 ALNLIATGAQGSMRDALSLTDQAINYSSEK-ITLNSMQEMLSII 624
+ + ++G +R A++ A + K IT + ++ +I
Sbjct: 226 GIAYLVKVSEGDLRKAITFLQSATRLTGGKEITEKVITDIAGVI 269
Score = 55 (24.4 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 20/58 (34%), Positives = 26/58 (44%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
KYRP + + Q + L +L+ L + LF G G GKT S ILA G
Sbjct: 43 KYRPKCVDEVAFQEEVVAVLKKSLEGADLPNL-LFYGPPGTGKT--STILAAARELFG 97
>GENEDB_PFALCIPARUM|PF14_0601 [details] [associations]
symbol:PF14_0601 "replication factor C3"
species:5833 "Plasmodium falciparum" [GO:0005663 "DNA replication
factor C complex" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] [GO:0006271 "DNA strand elongation involved in DNA
replication" evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 130 (50.8 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 48/207 (23%), Positives = 90/207 (43%)
Query: 427 TTISRILAKC-LNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYI-EMDAASTRGINEM 484
+TI R + K L + + G G T + +VC ++ ++ E++A+ RGIN +
Sbjct: 35 STIKRFVQKGELPHLLLHGPPG-TGKTSTILAVCKELYGDKRSSFVLELNASDDRGINVI 93
Query: 485 AQLLE-----QTIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538
++ + Y K+ ++DE +T+ A NAM + +E K ++F L
Sbjct: 94 RDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNY 153
Query: 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDAL 598
KI + SRC F + + N I EN+ ++ + G MR L
Sbjct: 154 VNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRIL 213
Query: 599 SLTDQAINYSSEKITLNSMQEMLSIID 625
+ Q ++ S + + ++ +LS +D
Sbjct: 214 NCL-QVVSLSHKNLVIDE-NVILSTLD 238
>UNIPROTKB|Q8IKK4 [details] [associations]
symbol:PF14_0601 "Replication factor C3" species:36329
"Plasmodium falciparum 3D7" [GO:0005663 "DNA replication factor C
complex" evidence=ISS] [GO:0006271 "DNA strand elongation involved
in DNA replication" evidence=ISS] [GO:0043626 "PCNA complex"
evidence=ISS] InterPro:IPR003593 InterPro:IPR003959
InterPro:IPR008921 Pfam:PF00004 SMART:SM00382 InterPro:IPR013748
GO:GO:0005524 GO:GO:0003677 EMBL:AE014187 KO:K10756 GO:GO:0017111
GO:GO:0006271 SUPFAM:SSF48019 GO:GO:0005663 GO:GO:0043626
Pfam:PF08542 HOGENOM:HOG000224152 HSSP:Q8U4J3 RefSeq:XP_001348775.1
ProteinModelPortal:Q8IKK4 EnsemblProtists:PF14_0601:mRNA
GeneID:812183 KEGG:pfa:PF14_0601 EuPathDB:PlasmoDB:PF3D7_1463200
OMA:ERIFITR ProtClustDB:CLSZ2432150 Uniprot:Q8IKK4
Length = 344
Score = 130 (50.8 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 48/207 (23%), Positives = 90/207 (43%)
Query: 427 TTISRILAKC-LNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYI-EMDAASTRGINEM 484
+TI R + K L + + G G T + +VC ++ ++ E++A+ RGIN +
Sbjct: 35 STIKRFVQKGELPHLLLHGPPG-TGKTSTILAVCKELYGDKRSSFVLELNASDDRGINVI 93
Query: 485 AQLLE-----QTIYAPIN-ARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538
++ + Y K+ ++DE +T+ A NAM + +E K ++F L
Sbjct: 94 RDQIKTFAESKNHYTTCEKTTLKLIILDEADHMTYPAQNAMRRIMENYAKNVRFCLLCNY 153
Query: 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDAL 598
KI + SRC F + + N I EN+ ++ + G MR L
Sbjct: 154 VNKITPAIQSRCTAFRFAPLKKEYMKNKALDIAKSENVNLTEGGIDSLIRVGHGDMRRIL 213
Query: 599 SLTDQAINYSSEKITLNSMQEMLSIID 625
+ Q ++ S + + ++ +LS +D
Sbjct: 214 NCL-QVVSLSHKNLVIDE-NVILSTLD 238
>UNIPROTKB|P40938 [details] [associations]
symbol:RFC3 "Replication factor C subunit 3" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005663 "DNA replication factor C complex" evidence=IDA;TAS]
[GO:0000731 "DNA synthesis involved in DNA repair" evidence=TAS]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006260 "DNA replication"
evidence=IDA;TAS] [GO:0003689 "DNA clamp loader activity"
evidence=TAS] [GO:0016887 "ATPase activity" evidence=IDA]
[GO:0046683 "response to organophosphorus" evidence=IEP]
[GO:0000075 "cell cycle checkpoint" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000278 "mitotic
cell cycle" evidence=TAS] [GO:0000722 "telomere maintenance via
recombination" evidence=TAS] [GO:0000723 "telomere maintenance"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0006271
"DNA strand elongation involved in DNA replication" evidence=TAS]
[GO:0006281 "DNA repair" evidence=TAS] [GO:0006283
"transcription-coupled nucleotide-excision repair" evidence=TAS]
[GO:0006289 "nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0006200 "ATP catabolic process"
evidence=IDA] Reactome:REACT_216 InterPro:IPR003593
InterPro:IPR008921 SMART:SM00382 InterPro:IPR013748 GO:GO:0005524
Reactome:REACT_115566 GO:GO:0005654 GO:GO:0000166 GO:GO:0003677
GO:GO:0006260 EMBL:CH471075 KO:K10756 GO:GO:0017111 GO:GO:0046683
GO:GO:0000084 eggNOG:COG0470 GO:GO:0000075 GO:GO:0000722
GO:GO:0000731 Reactome:REACT_383 GO:GO:0006283 GO:GO:0003689
GO:GO:0006271 GO:GO:0032201 GO:GO:0006297 SUPFAM:SSF48019
GO:GO:0005663 Pfam:PF08542 CTD:5983 HOGENOM:HOG000224153
HOVERGEN:HBG040509 OMA:TRIMCLL OrthoDB:EOG4T4CVP EMBL:L07541
EMBL:AF484446 EMBL:AL139081 EMBL:AL160394 EMBL:AL161891
EMBL:BC000149 EMBL:CX786577 IPI:IPI00031521 IPI:IPI00373882
PIR:T09573 RefSeq:NP_002906.1 RefSeq:NP_853536.2 UniGene:Hs.115474
ProteinModelPortal:P40938 SMR:P40938 DIP:DIP-36432N IntAct:P40938
MINT:MINT-3015032 STRING:P40938 PhosphoSite:P40938 DMDM:3915601
PaxDb:P40938 PeptideAtlas:P40938 PRIDE:P40938 DNASU:5983
Ensembl:ENST00000380071 Ensembl:ENST00000434425 GeneID:5983
KEGG:hsa:5983 UCSC:uc001uuz.3 GeneCards:GC13P034392 HGNC:HGNC:9971
HPA:HPA030149 MIM:600405 neXtProt:NX_P40938 PharmGKB:PA34340
InParanoid:P40938 PhylomeDB:P40938 ChiTaRS:RFC3 GenomeRNAi:5983
NextBio:23291 ArrayExpress:P40938 Bgee:P40938 CleanEx:HS_RFC3
Genevestigator:P40938 GermOnline:ENSG00000133119 Uniprot:P40938
Length = 356
Score = 130 (50.8 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 60/277 (21%), Positives = 119/277 (42%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + L + L N + H ++ G G GK T + + L +G++
Sbjct: 7 KYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVY-GPSGAGKKTRIMCILRELYGVGVE 65
Query: 444 G----NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG--INEMAQLLEQTIYAPIN 497
+ IT+ K + I + ++ DA ++ I EM + + Q+ N
Sbjct: 66 KLRIEHQTITTPSKKKIEIST-IASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETN 124
Query: 498 AR--YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNL 555
++ +K+ ++ EV LT A +A+ +T+E+ + IL K+ + SRC+ +
Sbjct: 125 SQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRV 184
Query: 556 KKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLN 615
DI + L + KE + + + +A + ++R AL L +A T +
Sbjct: 185 PAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL-LMCEACRVQQYPFTAD 243
Query: 616 SMQEMLSIIDQKYLIQILDAL-AEQDGNLILSIANKI 651
QE+ + YL + +A+ ++Q +L + ++
Sbjct: 244 --QEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRL 278
>CGD|CAL0000272 [details] [associations]
symbol:orf19.3601 species:5476 "Candida albicans" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR003593 InterPro:IPR003959 Pfam:PF00004
SMART:SM00382 CGD:CAL0000272 GO:GO:0005524 GO:GO:0017111
EMBL:AACQ01000103 EMBL:AACQ01000102 eggNOG:COG2256
RefSeq:XP_714445.1 RefSeq:XP_714494.1 ProteinModelPortal:Q59Y48
GeneID:3643833 GeneID:3643882 KEGG:cal:CaO19.11084
KEGG:cal:CaO19.3601 Uniprot:Q59Y48
Length = 547
Score = 98 (39.6 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 37/133 (27%), Positives = 64/133 (48%)
Query: 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR------YKIYV-ID 506
GK ++ I C + ++E+ A + ++ ++++ N + KI + ID
Sbjct: 73 GKTTLASVISYECGLPFLELSATTMTTMDLKTTIMQKNQKNQKNQKNQNVGEQKIVLFID 132
Query: 507 EVHMLTHHAFNAMLKTLEEPPKYIKFILATT-EPQ-KIPITVLSRCIQFNLKKMLHHDIV 564
E+H LT + +L LE I I ATT +P +I +LSRC F L+K+ +I
Sbjct: 133 ELHRLTKIQQDWLLPYLENGE--IVLIGATTIQPNTRIRQAILSRCQVFKLEKLTRKEIK 190
Query: 565 NNLCYILNKENIK 577
LC + +N+K
Sbjct: 191 KVLCQAITFQNLK 203
Score = 86 (35.3 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 19/67 (28%), Positives = 38/67 (56%)
Query: 375 EIIKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYL----FTGTRGVGKTTIS 430
++ + L+ RP+ F +GQ+H+ + A+ + + YL FTG G+GKTT++
Sbjct: 20 KLTSLSLSEAIRPTTFEQYVGQDHLINPIDGAI-RNFIKLGYLPSMIFTGPSGIGKTTLA 78
Query: 431 RILA-KC 436
+++ +C
Sbjct: 79 SVISYEC 85
Score = 43 (20.2 bits), Expect = 9.2e-05, Sum P(3) = 9.2e-05
Identities = 12/40 (30%), Positives = 18/40 (45%)
Query: 1047 YAIEY-DYFNP-CNLKSSLETKQIHGLFFAGQINGTTGYE 1084
Y +Y Y CN + L+ +Q G+ +G N G E
Sbjct: 475 YLSDYISYIKTYCNKQMELDAEQSSGVVGSGSGNNIDGVE 514
Score = 39 (18.8 bits), Expect = 0.00023, Sum P(3) = 0.00023
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 1233 KGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQ 1267
K N KN + E +D K Q+ +E + L+Q
Sbjct: 319 KNKNNKNKNSLEFIYDDFKTQI-----FENHYLQQ 348
WARNING: HSPs involving 17 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.137 0.393 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1342 1313 0.00084 124 3 11 22 0.39 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 267
No. of states in DFA: 620 (66 KB)
Total size of DFA: 516 KB (2238 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 114.23u 0.16s 114.39t Elapsed: 00:00:12
Total cpu time: 114.31u 0.16s 114.47t Elapsed: 00:00:12
Start: Thu Aug 15 13:05:00 2013 End: Thu Aug 15 13:05:12 2013
WARNINGS ISSUED: 2