RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy13354
(1342 letters)
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 989 bits (2560), Expect = 0.0
Identities = 342/576 (59%), Positives = 433/576 (75%), Gaps = 11/576 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG+L+ V DA+GG+MA A D++GIQFRILN+SKG AVRATRAQ DR+LY+QA+R
Sbjct: 78 KGHLVKEV----DALGGLMAKAIDQAGIQFRILNASKGPAVRATRAQADRVLYRQAVRTA 133
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
LENQ NL +FQ+ V+DLI++ ++++G VT++G+KF +K V+LT GTFL+GKIHIGL +YS
Sbjct: 134 LENQPNLMIFQQAVEDLIVENDRVVGAVTQMGLKFRAKAVVLTVGTFLDGKIHIGLDNYS 193
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR GD + L++RL+EL L GRLKTGTPPRID RTIDFS + +Q GD +P+PVFS +
Sbjct: 194 GGRAGDPPSIPLSRRLRELPLRVGRLKTGTPPRIDARTIDFSVLAQQHGD-NPMPVFSFM 252
Query: 937 GNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKK 996
GN + HP+Q+ C+ITHTNEKTH++IRS SP+++G IE +GPRYCPSIEDKV RF +
Sbjct: 253 GNASQHPQQVPCYITHTNEKTHDVIRSNLDRSPMYAGVIEGVGPRYCPSIEDKVMRFADR 312
Query: 997 KSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP 1056
H IFLEPEG+ NE YPNGISTSLPF+ Q+++V+S+ GM+NA I+RPGYAIEYD+F+P
Sbjct: 313 NQHQIFLEPEGLTSNEIYPNGISTSLPFDVQMQIVRSMQGMENAKIVRPGYAIEYDFFDP 372
Query: 1057 CNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYL 1116
+LK +LE+K I GLFFAGQINGTTGYEEAA+QGLLAGLNAA S D++ W P R QAYL
Sbjct: 373 RDLKPTLESKFIQGLFFAGQINGTTGYEEAAAQGLLAGLNAARLSADKEGWAPARSQAYL 432
Query: 1117 GVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR 1176
GVLVDDL T G +EPYRMFTSRAEYRL LREDNADLRLTEIG +LG V ++W F +K
Sbjct: 433 GVLVDDLCTLGTKEPYRMFTSRAEYRLMLREDNADLRLTEIGRELGLVDDERWARFNEKL 492
Query: 1177 EIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGIN 1236
E I +E QRLK TW+ PS E L + E S +LL P + Y LT+L
Sbjct: 493 ENIERERQRLKSTWVTPSAEAAAEVNAHLTAPLSREASGEDLLRRPEMTYEKLTTLTPFA 552
Query: 1237 GKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLSI 1296
+ E +Q++IQ++YEGYI RQ +E+EK NEN LP LDY ++ LS
Sbjct: 553 P------ALTDEQAAEQVEIQVKYEGYIARQQDEIEKQLRNENTLLPATLDYRQVSGLSN 606
Query: 1297 EARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
E KLN +KP +IGQASRISGVTPAA+++LL++LK
Sbjct: 607 EVIAKLNDHKPASIGQASRISGVTPAAISILLVWLK 642
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 975 bits (2523), Expect = 0.0
Identities = 251/577 (43%), Positives = 359/577 (62%), Gaps = 8/577 (1%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG + + DA+GG M A D +GIQFR+LN SKG A+ + RAQ D+ Y +R
Sbjct: 71 KGQITREI----DALGGEMGKAIDATGIQFRMLNRSKGPAMHSPRAQADKTQYSLYMRRI 126
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
+E++ N+ L Q+ V + + K V + G +K IL GTFLNG IHIG+ +
Sbjct: 127 VEHEPNIDLLQDTVIGVSANSGKFSSVTVRSGRAIQAKAAILACGTFLNGLIHIGMDHFP 186
Query: 877 AGR-FGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSV 935
GR + L + L L S GRLKTGTPPRID R++D++ + EQ GD FS
Sbjct: 187 GGRSTAEPPVEGLTESLASLGFSFGRLKTGTPPRIDSRSVDYTIVTEQPGD-VDPVPFSF 245
Query: 936 LGNINLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPK 995
+ +SC++T T EKTH+I+R+ F SP+F+GK++ +GPRYCPSIEDK+ RFP
Sbjct: 246 SSTSVANRNLVSCYLTKTTEKTHDILRTGFDRSPLFTGKVQGVGPRYCPSIEDKISRFPD 305
Query: 996 KKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFN 1055
K SHHIFLEPEG E Y NG STSLP + QI ++SI G++ A +IRPGYAIEYD+F+
Sbjct: 306 KSSHHIFLEPEGTDTVEMYVNGFSTSLPEDIQIAGLRSIPGLEEAKMIRPGYAIEYDFFH 365
Query: 1056 PCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAY 1115
P ++S++ET+ + LFFAGQINGT+GYEEAA+QGL+AG+NA ++ + GRDQAY
Sbjct: 366 PWQIRSTMETRPVENLFFAGQINGTSGYEEAAAQGLMAGINAVRKILGKELIVLGRDQAY 425
Query: 1116 LGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKK 1175
+GVL+DDLITK +EPYRMFTS AE+RL LR DNADLRL +IG+ VS E
Sbjct: 426 IGVLIDDLITKETKEPYRMFTSSAEHRLILRHDNADLRLRKIGYDCNLVSSDDLHRTESI 485
Query: 1176 REIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSLKGI 1235
+ + L+ +K + P+ +NT + +K +L+ P ++ +
Sbjct: 486 IKRVQHCLEVMKTAKVTPAEINT-LLMNKGLQELKTPARALSLIKRPGISLQDILEHSL- 543
Query: 1236 NGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMKIQSLS 1295
+ ++ + +Q++I+++YEGYI R+ ++ ++L +P N +Y + SLS
Sbjct: 544 SVRSAAEELCNDPRVAEQVQIEIKYEGYIKREQLVADRIARLDSLHIPDNFNYDSLNSLS 603
Query: 1296 IEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
E R+KL K++P TIGQASRI GV+P+ +++L+I L
Sbjct: 604 SEGREKLLKHRPATIGQASRILGVSPSDVSILMIRLG 640
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG; modification,
5-carboxymethylaminomethyl uridine, WOBB uridine, FAD;
HET: FAD; 2.30A {Aquifex aeolicus} PDB: 2zxh_A* 2e57_A*
Length = 637
Score = 956 bits (2473), Expect = 0.0
Identities = 262/582 (45%), Positives = 372/582 (63%), Gaps = 30/582 (5%)
Query: 757 KGNLIHAVLTVLDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFY 816
KG ++ + DA+GG M A D++GIQF++LN+ KG AV++ RAQ D+ Y++ ++
Sbjct: 77 KGIVVREI----DALGGEMGKAIDQTGIQFKMLNTRKGKAVQSPRAQADKKRYREYMKKV 132
Query: 817 LENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYS 876
ENQ NLY+ QEEV D+I+K N+++GV T +G+++ +K V++TTGTFLNG I+IG K
Sbjct: 133 CENQENLYIKQEEVVDIIVKNNQVVGVRTNLGVEYKTKAVVVTTGTFLNGVIYIGDKMIP 192
Query: 877 AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVL 936
GR G+ + L+ + R KTGTP R+DKRTIDFS +E GD DP P FS
Sbjct: 193 GGRLGEPRSEGLSDFYRRFDFPLIRFKTGTPARLDKRTIDFSALEVAPGD-DPPPKFSFW 251
Query: 937 GN------INLHPKQLSCFITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKV 990
+Q++C+IT+T KTH IIR + ++ G I+ IGPRYCPSIEDK+
Sbjct: 252 TEPVGSYWFPKGKEQVNCWITYTTPKTHEIIRKNLHRTALYGGLIKGIGPRYCPSIEDKI 311
Query: 991 YRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIE 1050
+FP K+ H IFLEPEG+ E YPNG+STSLP E Q E+ +SI G++N +IRP YAIE
Sbjct: 312 VKFPDKERHQIFLEPEGLDTIEIYPNGLSTSLPEEVQWEMYRSIPGLENVVLIRPAYAIE 371
Query: 1051 YDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPG 1110
YD P L +LETK+I GLF AG NGTTGYEEAA QG++AG+NAAL + ++P
Sbjct: 372 YDVVPPTELYPTLETKKIRGLFHAGNFNGTTGYEEAAGQGIVAGINAALRAFGKEPIYLR 431
Query: 1111 RDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWK 1170
RD++Y+GV++DDL TKG+ EPYR+FTSR+EYRL +R+DNA LRL ++G +LG +S +Q+K
Sbjct: 432 RDESYIGVMIDDLTTKGVTEPYRLFTSRSEYRLYIRQDNAILRLAKLGRELGLLSEEQYK 491
Query: 1171 IFEKKREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLT 1230
+ ++ I K + K ++ ++ + + Y+L ++
Sbjct: 492 LVKELEREIEKWKEFYKSERVSVAVGGDTR-SYSVATLMTMNYTLDDVKEKFGYEVPQH- 549
Query: 1231 SLKGINGKNLYNTEIYQEDIKKQLKIQLQYEGYILRQINEVEKNKINENLKLPHNLDYMK 1290
+K++++IQL+YE YI R+ EK K E+ K+P ++DY K
Sbjct: 550 -----------------PYVKEEVEIQLKYEPYIERERKLNEKLKKLEDTKIPPDIDYDK 592
Query: 1291 IQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLK 1332
I L+ EAR+KL K+KP T+GQASRI G+TPAA+T LL+YL
Sbjct: 593 IPGLTKEAREKLKKFKPITVGQASRIDGITPAAITALLVYLG 634
>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011,
serine hydroxymethyltransfera salmonella typhimurium.;
HET: MSE; 1.80A {Salmonella typhimurium} PDB: 1dfo_A*
3g8m_A* 1eqb_A*
Length = 420
Score = 736 bits (1903), Expect = 0.0
Identities = 218/382 (57%), Positives = 296/382 (77%), Gaps = 3/382 (0%)
Query: 1 MIIKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYP 60
M+ + N++ D ++W+ + +EK RQ +IELIASENYTS VM+AQG+ LTNKYAEGYP
Sbjct: 4 MLKREMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYP 63
Query: 61 GKRYYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
GKRYYGGC+++D++E++AI+R K++F A+ ANVQPHSGSQAN AV+ ++L PGDT++GM+
Sbjct: 64 GKRYYGGCEYVDVVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLQPGDTVLGMN 123
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY 180
L +GGHLTHG +N SGK +N + YG+++ KIDY ++ LAK++KPK+II G SAYS
Sbjct: 124 LAQGGHLTHGSPVNFSGKLYNIVPYGIDESGKIDYDEMAKLAKEHKPKMIIGGFSAYSGV 183
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFIL 240
+D+ + IA +I +Y VDMAH AGLIAAG YPNPVP A +T+TTHK+L GPRGG IL
Sbjct: 184 VDWAKMREIADSIGAYLFVDMAHVAGLIAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLIL 243
Query: 241 MK---KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSK 297
K ++ K +NSAVFP QGGPLMHVIA KAVA KE ++P+FK+YQ+QV KNAK + +
Sbjct: 244 AKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQQVAKNAKAMVE 303
Query: 298 ILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTS 357
+ RG ++VSGGT++H+ L+DL +K +TGK A++ L ANI NKNS+PNDP+ P+ TS
Sbjct: 304 VFLNRGYKVVSGGTENHLFLLDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTS 363
Query: 358 GIRLGSSAITTRGFSELEIIKV 379
GIR+GS A+T RGF E E+ ++
Sbjct: 364 GIRIGSPAVTRRGFKEAEVKEL 385
>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory,
pyridoxal phosphate, one-carbon metabolism,
PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus
stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A*
1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A*
2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A*
2vgv_A* 2vgw_A* ...
Length = 405
Score = 732 bits (1892), Expect = 0.0
Identities = 214/375 (57%), Positives = 290/375 (77%), Gaps = 1/375 (0%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+ L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYY
Sbjct: 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYY 61
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GG
Sbjct: 62 GGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGG 121
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG +N SG +N + YG++ + IDY V A+ ++PKLI+A A+AY + IDF
Sbjct: 122 HLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAAAAYPRIIDFA 181
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK 244
+F IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL +++
Sbjct: 182 KFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQ 241
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
+ K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G
Sbjct: 242 FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF 301
Query: 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364
+VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++
Sbjct: 302 TLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTA 361
Query: 365 AITTRGFSELEIIKV 379
A+TTRGF E+ ++
Sbjct: 362 AVTTRGFGLEEMDEI 376
>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA)
sandwich, CSGI transferase, structural genomics; HET:
MSE; 1.80A {Campylobacter jejuni}
Length = 417
Score = 732 bits (1891), Expect = 0.0
Identities = 200/377 (53%), Positives = 272/377 (72%), Gaps = 1/377 (0%)
Query: 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR 63
+L D +I+++ KE +RQ +E+IASEN+T VME G++LTNKYAEGYPGKR
Sbjct: 2 NAMSLEMFDKEIFDLTNKELERQCEGLEMIASENFTLPEVMEVMGSILTNKYAEGYPGKR 61
Query: 64 YYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
YYGGC+F+D IE +AI R KK+FN + ANVQP+SGSQANQ V+ +++NPGD I+GM L
Sbjct: 62 YYGGCEFVDEIETLAIERCKKLFNCKFANVQPNSGSQANQGVYAALINPGDKILGMDLSH 121
Query: 124 GGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GGHLTHG ++ SGK + S YG+ +IDY+KV +AKK KPKLI+ GASAY++ IDF
Sbjct: 122 GGHLTHGAKVSSSGKMYESCFYGVELDGRIDYEKVREIAKKEKPKLIVCGASAYARVIDF 181
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+F IA I +Y D+AH AGL+ AGE+P+P P+A ++STTHK+LRGPRGG I+
Sbjct: 182 AKFREIADEIGAYLFADIAHIAGLVVAGEHPSPFPYAHVVSSTTHKTLRGPRGGIIMTND 241
Query: 244 -KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302
+ K INSA+FPGIQGGPLMHVIAAKAV FK L ++K+Y KQV NA++L+ +L R
Sbjct: 242 EELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQVRTNAQVLANVLMDR 301
Query: 303 GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362
++VS GT +H++L+ +++ +GK A+ L +A I NKN++P + P+ TSG+RLG
Sbjct: 302 KFKLVSDGTDNHLVLMSFLDREFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLRLG 361
Query: 363 SSAITTRGFSELEIIKV 379
+ A+T RGF E E+ V
Sbjct: 362 TPALTARGFKEKEMEIV 378
>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural
genomics; HET: PLP; 1.15A {Thermus thermophilus}
Length = 407
Score = 727 bits (1880), Expect = 0.0
Identities = 210/376 (55%), Positives = 275/376 (73%), Gaps = 2/376 (0%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+ K D ++E+I E++RQ +ELIASEN+ S V EA G++LTNKYAEGYPG RYY
Sbjct: 2 VSTLKRDEALFELIALEEKRQREGLELIASENFVSKQVREAVGSVLTNKYAEGYPGARYY 61
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+ ID +E +AI R K +F A ANVQPHSGSQAN AV+ +++ PGDT+MGM L GG
Sbjct: 62 GGCEVIDRVESLAIERAKALFGAAWANVQPHSGSQANMAVYMALMEPGDTLMGMDLAAGG 121
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG +N SGK + + YG+ E ID ++V LA +++PK+I+AGASAY ++ DF+
Sbjct: 122 HLTHGSRVNFSGKLYKVVSYGVRPDTELIDLEEVRRLALEHRPKVIVAGASAYPRFWDFK 181
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK- 243
F IA + +Y +VDMAH+AGL+AAG +PNP+P+A +TSTTHK+LRGPRGG IL
Sbjct: 182 AFREIADEVGAYLVVDMAHFAGLVAAGLHPNPLPYAHVVTSTTHKTLRGPRGGLILSNDP 241
Query: 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRG 303
+ K I+ +FPGIQGGPL HVIA KAVAF E L+P+FK Y + VV+NAK L++ L +RG
Sbjct: 242 ELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVENAKRLAEELARRG 301
Query: 304 IRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGS 363
RIV+GGT +H+ LVDLR K +TGK AE L++ I NKN+IP DP+ P TSGIR+G+
Sbjct: 302 YRIVTGGTDNHLFLVDLRPKGLTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGT 361
Query: 364 SAITTRGFSELEIIKV 379
AITTRGF+ E+ V
Sbjct: 362 PAITTRGFTPEEMPLV 377
>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A,
one-carbon metabolism, pyridoxa phosphate, structural
genomics; 1.60A {Burkholderia pseudomallei}
Length = 425
Score = 727 bits (1878), Expect = 0.0
Identities = 218/377 (57%), Positives = 277/377 (73%), Gaps = 2/377 (0%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+++L++ D + ILKE +RQ + +ELIASEN S AV++AQG++LTNKYAEGYPGKRY
Sbjct: 10 SQSLAERDASVRGAILKELERQQSQVELIASENIVSRAVLDAQGSVLTNKYAEGYPGKRY 69
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEG 124
YGGC+F D +E +AI R+K++FNA ANVQPHSG+QAN AV ++ PGDT++GMSL G
Sbjct: 70 YGGCEFADEVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLALAKPGDTVLGMSLDAG 129
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GHLTHG +SGKWFN++ YG+++ IDY +VE LA+++KP LIIAG SAY + +DF
Sbjct: 130 GHLTHGAKPALSGKWFNALQYGVSRDTMLIDYDQVEALAQQHKPSLIIAGFSAYPRKLDF 189
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
RF IA ++ + MVDMAH AG+IAAG + NPV A +TSTTHK+LRGPRGGF+L
Sbjct: 190 ARFRAIADSVGAKLMVDMAHIAGVIAAGRHANPVEHAHVVTSTTHKTLRGPRGGFVLTND 249
Query: 244 -KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQR 302
+ K INSAVFPG+QGGPLMHVIA KAVAF E L DFK Y +V+ NA+ L +L
Sbjct: 250 EEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKTYIDRVLANAQALGDVLKAG 309
Query: 303 GIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLG 362
G+ +V+GGT +H++LVDLR K + G E LE A I CNKN IP DPEKP TSGIRLG
Sbjct: 310 GVDLVTGGTDNHLLLVDLRPKGLKGAQVEQALERAGITCNKNGIPFDPEKPTITSGIRLG 369
Query: 363 SSAITTRGFSELEIIKV 379
+ A TTRGF E +V
Sbjct: 370 TPAGTTRGFGAAEFREV 386
>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon
metabolism, pyridoxal phosphate, structural genomics;
HET: LLP; 1.50A {Mycobacterium tuberculosis}
Length = 447
Score = 725 bits (1875), Expect = 0.0
Identities = 187/381 (49%), Positives = 266/381 (69%), Gaps = 6/381 (1%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+ L+++DP I E++ KE RQ + +E+IASEN+ AV++AQG++LTNKYAEG PG+RY
Sbjct: 23 SAPLAEVDPDIAELLAKELGRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGLPGRRY 82
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEG 124
YGGC+ +D++E +A +R K +F AE ANVQPHSG+QAN AV ++++PG+ ++G+ L G
Sbjct: 83 YGGCEHVDVVENLARDRAKALFGAEFANVQPHSGAQANAAVLHALMSPGERLLGLDLANG 142
Query: 125 GHLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GHLTHGM LN SGK + + YG++ ID V A + +PK+IIAG SAY + +DF
Sbjct: 143 GHLTHGMRLNFSGKLYENGFYGVDPATHLIDMDAVRATALEFRPKVIIAGWSAYPRVLDF 202
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
F IA + + +VDMAH+AGL+AAG +P+PVP AD +++T HK+L G R G I+ K+
Sbjct: 203 AAFRSIADEVGAKLLVDMAHFAGLVAAGLHPSPVPHADVVSTTVHKTLGGGRSGLIVGKQ 262
Query: 244 KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKIL---- 299
+Y K INSAVFPG QGGPLMHVIA KAVA K P+F Q++ + A+I++ L
Sbjct: 263 QYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQRRTLSGARIIADRLMAPD 322
Query: 300 -DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSG 358
+ G+ +VSGGT H++LVDLR+ + G+ AE +L I N+N++PNDP P TSG
Sbjct: 323 VAKAGVSVVSGGTDVHLVLVDLRDSPLDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSG 382
Query: 359 IRLGSSAITTRGFSELEIIKV 379
+R+G+ A+ TRGF + E +V
Sbjct: 383 LRIGTPALATRGFGDTEFTEV 403
>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural
genomics consortium, SGC; 2.04A {Homo sapiens} SCOP:
c.67.1.4 PDB: 3ou5_A
Length = 490
Score = 677 bits (1749), Expect = 0.0
Identities = 179/402 (44%), Positives = 251/402 (62%), Gaps = 26/402 (6%)
Query: 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR 63
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGKR
Sbjct: 31 GQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGKR 90
Query: 64 YYGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMGM 119
YYGG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG+
Sbjct: 91 YYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMGL 150
Query: 120 SLQEGGHLTHGMM-----LNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAG 173
L +GGHLTHG M ++ + +F S+ Y LN K IDY ++ A+ +P+LIIAG
Sbjct: 151 DLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIAG 210
Query: 174 ASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRG 233
SAY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LRG
Sbjct: 211 TSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRG 270
Query: 234 PRGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK 278
R G I +K ++ IN AVFP +QGGP H IAA AVA K+
Sbjct: 271 ARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACT 330
Query: 279 PDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESAN 338
P F+ Y QV+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE +
Sbjct: 331 PMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVS 390
Query: 339 IICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
I NKN+ P D G+RLG+ A+T+R F E + +VV
Sbjct: 391 ITANKNTCPGD-RSAITPGGLRLGAPALTSRQFREDDFRRVV 431
>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism;
HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP:
c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A*
1bj4_A* 1eji_A*
Length = 483
Score = 673 bits (1739), Expect = 0.0
Identities = 176/401 (43%), Positives = 246/401 (61%), Gaps = 26/401 (6%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+ L D ++++II KE RQ +ELIASEN+ S AV+EA G+ L NKY+ GYPG+RY
Sbjct: 22 AQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRY 81
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + ID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+
Sbjct: 82 YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLD 141
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGA 174
L +GGHLTHG M ++ + +F S+ Y +N IDY ++E A+ PKLIIAG
Sbjct: 142 LPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT 201
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
S YS+ +D+ R IA +Y M DMAH +GL+ AG P+P +T+TTHK+LRG
Sbjct: 202 SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGC 261
Query: 235 RGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279
R G I ++ + +INSAVFPG+QGGP H IA AVA K+ + P
Sbjct: 262 RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 321
Query: 280 DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339
+FK YQ+QVV N + LS L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I
Sbjct: 322 EFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSI 381
Query: 340 ICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
CNKN+ P D + SG+RLG+ A+T+RG E + KV
Sbjct: 382 ACNKNTCPGD-KSALRPSGLRLGTPALTSRGLLEKDFQKVA 421
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp,
clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A
{Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B*
3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Length = 373
Score = 547 bits (1411), Expect = 0.0
Identities = 165/361 (45%), Positives = 240/361 (66%), Gaps = 6/361 (1%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 5 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 65 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 119
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 120 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 179
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 180 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 239
Query: 620 MLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISP 679
ML +D + +++A+ E +G ++++ N+ + + +L ++ LLH+I+++Q+SP
Sbjct: 240 MLGTLDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSP 299
Query: 680 EILIKDSPNYNE-IIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVF 738
L D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 300 AALGNDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAF 359
Query: 739 Q 739
Sbjct: 360 H 360
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase
domains, sensor 1, sensor 2, transferase; HET: DNA;
2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Length = 250
Score = 427 bits (1100), Expect = e-140
Identities = 129/242 (53%), Positives = 176/242 (72%), Gaps = 5/242 (2%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 12 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 72 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 126
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 127 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 186
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 187 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 246
Query: 620 ML 621
ML
Sbjct: 247 ML 248
>3g5s_A Methylenetetrahydrofolate--tRNA-(uracil-5-)- methyltransferase TRMFO;
tRNA methyltransferase FAD folate, FAD, flavoprotein;
HET: MSE FAD GSH; 1.05A {Thermus thermophilus} PDB:
3g5q_A* 3g5r_A*
Length = 443
Score = 304 bits (781), Expect = 2e-92
Identities = 76/393 (19%), Positives = 130/393 (33%), Gaps = 55/393 (13%)
Query: 768 LDAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQ 827
+ G ++ A D + + A A VDR + I L L + +
Sbjct: 71 MRRAGSLVMEAADLA----------RVPAGGALA--VDREEFSGYITERLTGHPLLEVVR 118
Query: 828 EEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTS 887
EEV ++ +L TG + + LK G +
Sbjct: 119 EEVREIP------------------PGITVLATGPLTSEALAEALKRRF-GDHFLAYYDA 159
Query: 888 LAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLS 947
+ + + + ++ EE+ F +
Sbjct: 160 ASPIVLYESIDLTKCFRAGRYGQSADYLNCPMTEEEYRRFHQAL-------LEAQRHTPH 212
Query: 948 CFITHTNEKTHNIIRSEFKN--SPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEP 1005
+ + + + + G ++ +G R K+ + L
Sbjct: 213 DWEKLEFFEACVPVEELARRGYQTLLFGPMKPVGLVDP--------RTGKEPFAVVQLRQ 264
Query: 1006 EGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCN-LKSSLE 1064
E + G T L + Q L+Q I G++NA I+R G Y N L +LE
Sbjct: 265 EDKAGRMWSLVGFQTGLKWPEQKRLIQMIPGLENAEIVRYGVMHRNTYLNAPRLLGETLE 324
Query: 1065 TKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDLI 1124
++ GL+ AG + G GY E+A+ G LAGLNAA + P P +++ LG LV L
Sbjct: 325 FREAEGLYAAGVLAGVEGYLESAATGFLAGLNAARKALGLPPVAP-PEESMLGGLVRYLA 383
Query: 1125 TKGIQEPYRMF-----TSRAEYRLNLREDNADL 1152
T + M+ E R+ +E +
Sbjct: 384 TANPEGFQPMYANWGLVPPVEGRMGKKEKRQAM 416
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia
coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E*
1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Length = 334
Score = 288 bits (740), Expect = 4e-88
Identities = 69/330 (20%), Positives = 114/330 (34%), Gaps = 35/330 (10%)
Query: 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455
+ L+ + R HHA L G+G + L++ L C + CG
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLC-----QQPQGHKSCGH 61
Query: 456 CSVCVKIDNGCFMDYIEM---DAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT 512
C C + G DY + +T G++ + ++ E+ K+ + + +LT
Sbjct: 62 CRGCQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT 121
Query: 513 HHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILN 572
A NA+LKTLEEPP F LAT EP+++ T+ SRC L V L
Sbjct: 122 DAAANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL----- 176
Query: 573 KENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQI 632
+ AL + GS AL+L + E + Q + + +
Sbjct: 177 SREVTMSQDALLAALRLSAGSPGAALALFQGDNWQARETL----CQALAYSVPSGDWYSL 232
Query: 633 LDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEI 692
L AL + L L+ LL + + +
Sbjct: 233 LAALNHEQAPARLHW-----------------LATLLMDALKRHHGAAQVT-NVDVPGLV 274
Query: 693 IQLSKKFNIEQIQLFYQISIHGRNELELAP 722
+L+ + ++Q H R +L
Sbjct: 275 AELANHLSPSRLQAILGDVCHIREQLMSVT 304
>2gno_A DNA polymerase III, gamma subunit-related protein; structural
genomics, joint center for structural genomics, J
protein structure initiative; HET: DNA; 2.00A
{Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Length = 305
Score = 270 bits (691), Expect = 7e-82
Identities = 51/315 (16%), Positives = 113/315 (35%), Gaps = 30/315 (9%)
Query: 420 GTRGVGKTTISRILAKCLNC-IGIDG-NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477
G + +T RI+ K I I+G + + + V+ D +E+D
Sbjct: 1 GAKDQLETL-KRIIEKSEGISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG 59
Query: 478 -TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
GI+++ + + Y+P K ++ + +T A NA LK LEEPP+Y +L T
Sbjct: 60 ENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAFLKALEEPPEYAVIVLNT 119
Query: 537 TEPQKIPITVLSRCIQF------NLKKMLHHDIVNNLCYI-LNKENIKFETSALNLIATG 589
+ T+ SR + + ++ I + + L + + K A L A
Sbjct: 120 RRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLLERDFKTALEAYKLGAEK 179
Query: 590 AQGSMR-----DALSLTDQAINYSSE-KITLNSMQEMLSIIDQKYLIQILDALAEQDGNL 643
G M + L + ++ E + + E S ++ K + D
Sbjct: 180 LSGLMESLKVLETEKLLKKVLSKGLEGYLACRELLERFSKVESKEFFALFDQ-------- 231
Query: 644 ILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNIEQ 703
+ + + ++++ L+ ++ + + + + ++++ N
Sbjct: 232 VTNTITGKDA-----FLLIQRLTRIILHENTWESVEDQKSVSFLDSILRVKIANLNNKLT 286
Query: 704 IQLFYQISIHGRNEL 718
+ I + +
Sbjct: 287 LMNILAIHRERKRGV 301
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 216 bits (553), Expect = 3e-64
Identities = 33/174 (18%), Positives = 60/174 (34%), Gaps = 13/174 (7%)
Query: 793 KGAAVRATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFF 852
K V A A+ +L E L+LFQ L+++ N+++GV T G
Sbjct: 63 KDERVWAFHARAKYLL---------EGLRPLHLFQATATGLLLEGNRVVGVRTWEGPPAR 113
Query: 853 SKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKELQLSHGRLKTGTP--PRI 910
+ V+L G+FL ++ +G AGR + S L + L L + P P
Sbjct: 114 GEKVVLAVGSFLGARLFLGGVVEEAGRLSEASYPDLLEDLSRLGFRFVEREGEVPETPST 173
Query: 911 DKRTIDFSKMEEQIGDFDPVPVFSVLGNI-NLHPKQLSCFITHTNEKTHNIIRS 963
+ + + + L + + +E+ +
Sbjct: 174 PGYRVRYLAFHPEEWEEKTFR-LKRLEGLYAVGLCVREGDYARMSEEGKRLAEH 226
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET:
ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Length = 368
Score = 203 bits (518), Expect = 7e-58
Identities = 52/306 (16%), Positives = 106/306 (34%), Gaps = 56/306 (18%)
Query: 389 NFNTLIGQNHISKS---LINALDKKRLH-HAYLFTGTRGVGKTTISRILAKCLNC----- 439
++GQ ++ ++ + + ++ A L G G GKT I+ +A+ L
Sbjct: 42 ASQGMVGQLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFT 101
Query: 440 --------IGIDGNGGITSQPCGKCSVCVKIDNGC-FMDYIEMDAASTRGINEMA----- 485
+Q + + E+D ++R +A
Sbjct: 102 AIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGD 161
Query: 486 ------QLLEQTIYAPINARYK--------IYVIDEVHMLTHHAFNAMLKTLEEPPKYIK 531
++ EQ R + + IDEVHML +F+ + + LE +
Sbjct: 162 TGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDIESFSFLNRALESDMAPV- 220
Query: 532 FILATTE------------PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFE 579
I+AT P IPI +L R + + D L +E+++
Sbjct: 221 LIMATNRGITRIRGTSYQSPHGIPIDLLDRLLIVSTTPYSEKDTKQILRIRCEEEDVEMS 280
Query: 580 TSALNLIA-TGAQGSMRDALSLTDQAINYS----SEKITLNSMQEMLSI-IDQKYLIQIL 633
A ++ G + S+R A+ L A ++ ++ ++ + S+ +D+ Q +
Sbjct: 281 EDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSLFLDESRSTQYM 340
Query: 634 DALAEQ 639
+
Sbjct: 341 KEYQDA 346
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 354
Score = 142 bits (359), Expect = 7e-37
Identities = 63/329 (19%), Positives = 133/329 (40%), Gaps = 23/329 (6%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + N L ++ L + D+ R L G G GK T L + + G+
Sbjct: 7 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVY 66
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRG---------INEMAQ---LLEQT 491
Q + ++++ ++E+ + + E+AQ + Q
Sbjct: 67 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD 126
Query: 492 IYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI 551
+ RYK +I+E + LT A A+ +T+E+ K I+ I+ I + S+C+
Sbjct: 127 SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 186
Query: 552 QFNLKKMLHHDIVNNLCYILNKENIKFET-SALNLIATGAQGSMRDALSLTDQAINYSSE 610
+I L ++ E I+ ET L IA + G++R +L L +++ +
Sbjct: 187 LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSL-LMLESM-ALNN 244
Query: 611 KITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLH 670
++ L S ++ + ++ + ++ S+ + IE + Y ++ + +
Sbjct: 245 ELALKSSSPIIKPDWIIVIHKLTRKIVKER-----SVNSLIECRAVLYDLLAHCIP--AN 297
Query: 671 QISLIQISPEILIKDSPNYNEIIQLSKKF 699
I L +++ +L ++ N + +
Sbjct: 298 II-LKELTFSLLDVETLNTTNKSSIIEYS 325
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATP ATP-binding,
nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus
fulgidus} PDB: 2chv_A
Length = 319
Score = 122 bits (309), Expect = 1e-30
Identities = 65/297 (21%), Positives = 124/297 (41%), Gaps = 35/297 (11%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++GQ+ + + L +++K + H LF+G G GKT + LA+ L
Sbjct: 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENWR 68
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN---EMAQLLEQTIYAPINARY 500
N +IEM+A+ RGI+ + +T A +
Sbjct: 69 DN------------------------FIEMNASDERGIDVVRHKIKEFARTAPIG-GAPF 103
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSRCIQFNLKKM 558
KI +DE LT A A+ +T+E K +FIL+ +I PI SRC F K +
Sbjct: 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--SRCAVFRFKPV 161
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
+ L I KE +K L + + G R A++ Q E + +++
Sbjct: 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL-QGAAAIGEVVDADTIY 220
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISL 674
++ + + + +++ + + + +++ + Y +S ++ L + + +
Sbjct: 221 QITATARPEEMTELIQTALKGNFMEARELLDRLMVEYGMSGEDIVAQLFREIISMPI 277
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP,
replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP:
a.80.1.1 c.37.1.20
Length = 327
Score = 121 bits (306), Expect = 4e-30
Identities = 84/327 (25%), Positives = 134/327 (40%), Gaps = 43/327 (13%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++GQ HI K L + + + H LF G GVGKTT + LA+ L
Sbjct: 18 KYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALALARELFGENWR 76
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN---EMAQLLEQTIYAPINARY 500
N ++E++A+ RGIN E + +T A +
Sbjct: 77 HN------------------------FLELNASDERGINVIREKVKEFARTKPIG-GASF 111
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSRCIQFNLKKM 558
KI +DE LT A A+ +T+E ++FIL+ KI PI SRC F + +
Sbjct: 112 KIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQ--SRCAIFRFRPL 169
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
DI L YI E ++ L I A+G MR A+++ QA +KIT ++
Sbjct: 170 RDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINIL-QAAAALDKKITDENVF 228
Query: 619 EMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQISL-IQ 676
+ S + + +++ + + +I + LS VL + + + +
Sbjct: 229 MVASRARPEDIREMMLLALKGNFLKAREKLREILLKQGLSGEDVLVQMHKEVFNLPIEEP 288
Query: 677 ISPEILI-------KDSPNYNEIIQLS 696
+ + NEIIQL
Sbjct: 289 KKVLLADKIGEYNFRLVEGANEIIQLE 315
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 353
Score = 118 bits (298), Expect = 8e-29
Identities = 68/320 (21%), Positives = 121/320 (37%), Gaps = 47/320 (14%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP N + + Q+H L L L H LF G G GKT+ L K L +
Sbjct: 30 KYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGPDLM 88
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN-------EMAQ-----LLEQT 491
+ +E++A+ RGI+ A+ +
Sbjct: 89 KS-----------------------RILELNASDERGISIVREKVKNFARLTVSKPSKHD 125
Query: 492 IYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSR 549
+ YKI ++DE +T A +A+ +T+E +F L +I P+ S+
Sbjct: 126 LENYPCPPYKIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLA--SQ 183
Query: 550 CIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSL-----TDQA 604
C +F K + + ++ L +I +EN+K + L I + G +R ++L
Sbjct: 184 CSKFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQ 243
Query: 605 INYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKD 664
+ IT ++E+ ++ LI+I++ + D + I N S + V+
Sbjct: 244 YLGDGKNITSTQVEELAGVVPHDILIEIVEKVKSGDFDEIKKYVNTFMKSGWSAASVVNQ 303
Query: 665 LSLLLHQISLIQISPEILIK 684
L I+ +
Sbjct: 304 LHEYY--ITNDNFDTNFKNQ 321
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA
replication, clamp loader, AAA+ ATPase, ATP-binding,
nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus
fulgidus}
Length = 226
Score = 110 bits (276), Expect = 4e-27
Identities = 62/242 (25%), Positives = 102/242 (42%), Gaps = 34/242 (14%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++GQ+ + + L +++K + H LF+G G GKT + LA+ L
Sbjct: 10 KYRPRTLDEVVGQDEVIQRLKGYVERKNIPH-LLFSGPPGTGKTATAIALARDLFGENWR 68
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN---EMAQLLEQTIYAPINARY 500
N +IEM+A+ RGI+ + +T A +
Sbjct: 69 DN------------------------FIEMNASDERGIDVVRHKIKEFARTAPIG-GAPF 103
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSRCIQFNLKKM 558
KI +DE LT A A+ +T+E K +FIL+ +I PI SRC F K +
Sbjct: 104 KIIFLDEADALTADAQAALRRTMEMYSKSCRFILSCNYVSRIIEPIQ--SRCAVFRFKPV 161
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
+ L I KE +K L + + G R A++ Q E + +++
Sbjct: 162 PKEAMKKRLLEICEKEGVKITEDGLEALIYISGGDFRKAINAL-QGAAAIGEVVDADTIY 220
Query: 619 EM 620
++
Sbjct: 221 QI 222
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 323
Score = 112 bits (282), Expect = 5e-27
Identities = 60/323 (18%), Positives = 121/323 (37%), Gaps = 36/323 (11%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + ++G L + H + +G G+GKTT LA L
Sbjct: 14 KYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGRSYA 72
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN---EMAQLLEQTIYAPINARY 500
+E++A+ RGI+ + Q ++
Sbjct: 73 DG------------------------VLELNASDDRGIDVVRNQIKHFAQKKLHLPPGKH 108
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
KI ++DE +T A A+ +T+E +F A + KI + S+C K+
Sbjct: 109 KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD 168
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
D++ L I+ E++K+ L I A+G MR A++ Q+ + +++ ++
Sbjct: 169 EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNL-QSTVAGHGLVNADNVFKI 227
Query: 621 LSIIDQKYLIQIL------DALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQ-IS 673
+ + ++L D++ +L + I+I S+ + + +
Sbjct: 228 VDSPHPLIVKKMLLASNLEDSIQILRTDLWKKGYSSIDIVTTSFRVTKNLAQVKESVRLE 287
Query: 674 LIQISPEILIKDSPNYNEIIQLS 696
+I+ ++ +QL+
Sbjct: 288 MIKEIGLTHMRILEGVGTYLQLA 310
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 340
Score = 112 bits (282), Expect = 7e-27
Identities = 67/329 (20%), Positives = 130/329 (39%), Gaps = 41/329 (12%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + + GQN + ++ +D+ +L H LF G G GKT+ LA+ +
Sbjct: 18 KYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYGKNYS 76
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQ--TIYAPINARYK 501
+E++A+ RGI+ + ++ + + +K
Sbjct: 77 NM------------------------VLELNASDDRGIDVVRNQIKDFASTRQIFSKGFK 112
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHH 561
+ ++DE +T+ A NA+ + +E K +F + K+ +LS+C +F + +
Sbjct: 113 LIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPLPQE 172
Query: 562 DIVNNLCYILNKENIKFETSALNLIATGAQGSMRDAL----SLTDQAINYSSEKITLNSM 617
I + +L E +K +A + + G MR L S N ++I+ + +
Sbjct: 173 AIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISDDVI 232
Query: 618 QEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEI-YNLSYSIVLKDLSLLLHQ----- 671
E L +L ++ E D NK+ L+ +++ + +L
Sbjct: 233 YECCGAPRPSDLKAVLKSILEDDWGTAHYTLNKVRSAKGLALIDLIEGIVKILEDYELQN 292
Query: 672 ----ISLIQISPEILIKDSPNYNEIIQLS 696
+ L+ +I S N+ IQ S
Sbjct: 293 EETRVHLLTKLADIEYSISKGGNDQIQGS 321
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA
sliding clamp, AAA+ at polymerase, DNA-binding protein;
HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP:
a.80.1.1 c.37.1.20
Length = 516
Score = 101 bits (253), Expect = 3e-22
Identities = 62/422 (14%), Positives = 136/422 (32%), Gaps = 92/422 (21%)
Query: 384 KYRPSNFNTLIGQNHISKSLINAL-----------------DKKRLHHAYLFTGTRGVGK 426
KY P+N + G L N L A + G G+GK
Sbjct: 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAA-MLYGPPGIGK 90
Query: 427 TTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINE--- 483
TT + ++A+ L D +E +A+ R
Sbjct: 91 TTAAHLVAQELG-----------------------------YDILEQNASDVRSKTLLNA 121
Query: 484 -----------MAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLE-EPPKYIK 531
+ +N ++ + ++DEV ++ + + +
Sbjct: 122 GVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTP 181
Query: 532 FILATTEP--QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATG 589
IL E K+ C+ ++ + I + L I +E K + + ++ +
Sbjct: 182 LILICNERNLPKMR-PFDRVCLDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQT 240
Query: 590 AQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDAL--------AEQDG 641
+G +R ++L I+ +++ I ++ E+ ++ ++ D G
Sbjct: 241 TRGDIRQVINLL-STISTTTKTINHENINEISKAWEKNIALKPFDIAHKMLDGQIYSDIG 299
Query: 642 NLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLSKKFNI 701
+ ++ +KI +Y + D + L+ Q + + P +L + + + +
Sbjct: 300 SRNFTLNDKIALYFDDF-----DFTPLMIQENYLSTRPSVLKPGQSHLEAVAEAA----- 349
Query: 702 EQIQLF--YQISIHGRNEL-ELAPDEYAGFTMTLLR-MLVFQTLHNHLDYNN--LKNSKD 755
I L + I +L L P ++ V + +++ +NSK
Sbjct: 350 NCISLGDIVEKKIRSSEQLWSLLP--LHAVLSSVYPASKVAGHMAGRINFTAWLGQNSKS 407
Query: 756 TK 757
K
Sbjct: 408 AK 409
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 99.4 bits (247), Expect = 8e-22
Identities = 59/352 (16%), Positives = 106/352 (30%), Gaps = 51/352 (14%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E +S I ++E N L + + Y L + ++A G Y
Sbjct: 14 ETVSMIPRDERLKKMQE--AGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMMGDEAY 71
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
G + +E+ ++++F + V H G A + + PG + G
Sbjct: 72 AGSENFYHLER----TVQELFGFKHI-VPTHQGRGAENLLSQLAIKPGQYVAGNMY---F 123
Query: 126 HLTHGMMLNMSGKWFNSICYG-------LNKKEKIDYKKVEYLAKKNKPKLI-------- 170
T + + + + K ID KK++ L + + I
Sbjct: 124 TTTRYHQEKNGAVFVDIVRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVT 183
Query: 171 --IAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAG-----LIAAGEYPNPVP----- 218
+AG S + + + D + N
Sbjct: 184 VNLAGGQPVSM-ANMRAVRELTEAHGIKVFYDATRCVENAYFIKEQEQGFENKSIAEIVH 242
Query: 219 ----FADFITSTTHKSLRGPRGGFILMKKK--YKKIINSAVFPG---IQGGPLMHVIAAK 269
+AD T + K GGF+ M + V GG + A
Sbjct: 243 EMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRDMEAM 302
Query: 270 AVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLR 321
A+ +E ++ + Y + VK + L L G+ IV H + +D R
Sbjct: 303 AIGLREAMQYE---YIEHRVKQVRYLGDKLKAAGVPIVE-PVGGHAVFLDAR 350
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 94.0 bits (233), Expect = 3e-19
Identities = 117/608 (19%), Positives = 197/608 (32%), Gaps = 186/608 (30%)
Query: 473 MDAASTRGINEMAQL----LEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP- 527
MDA STR + L LE + P + + + E F K L EP
Sbjct: 1 MDAYSTRPL----TLSHGSLEHVLLVPTASFFIASQLQE-------QF---NKILPEPTE 46
Query: 528 ----------------KYIKFILATTEPQKIP--ITVLSRCIQ-FNLKKMLHHDIVNNLC 568
K++ ++ + EP K+ VL+ C+ F + +DI + L
Sbjct: 47 GFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-HALA 105
Query: 569 YILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKY 628
L +EN LI A + + + S ++ E + +
Sbjct: 106 AKLLQENDTTLVKTKELIKNYIT-----ARIMAKRPFDKKSNSALFRAVGEGNAQL---V 157
Query: 629 LI---Q--ILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEIL- 682
I Q D E L ++Y +Y +++ DL I+ S E L
Sbjct: 158 AIFGGQGNTDDYFEE------LR-----DLYQ-TYHVLVGDL---------IKFSAETLS 196
Query: 683 --IKDSPNYNEIIQLSKKFNIEQ-IQLFYQISIHGRNELELAPDE----YAGFTMTLLRM 735
I+ + + ++ ++ NI + ++ PD+ + L+ +
Sbjct: 197 ELIRTTLDAEKV--FTQGLNILEWLE-----------NPSNTPDKDYLLSIPISCPLIGV 243
Query: 736 LVFQTLHNHLDY-NNLKNSKDTKGNLIHAVLTVLDAMGGI---MAIATDKSGIQFRILNS 791
+ Q H Y K T G L + G+ +AIA S F ++
Sbjct: 244 I--QLAH----YVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESF-FVSV 296
Query: 792 SK--------GAAVRATRAQVDRILYKQAIRFYLEN-------QLNLY-LFQEEVDDLII 835
K G VR A + L + LEN L++ L QE+V D +
Sbjct: 297 RKAITVLFFIG--VRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVN 354
Query: 836 KTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGRFGDFSTTSLAKRLKEL 895
KTN L ++ I L + + + + + L L
Sbjct: 355 KTNSHLPA---------------------GKQVEISL--VNGAK--NLVVSGPPQSLYGL 389
Query: 896 QLSHGRLKTGTPPRIDKRTIDFSKMEEQIGD-FDPV--PVFSVL--------------GN 938
L+ + K P +D+ I FS+ + + + F PV P S L N
Sbjct: 390 NLTLRKAK--APSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNN 447
Query: 939 INLHPKQLSC--FITHTNEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSI-EDKVY--RF 993
++ + K + + T +R SG SI R I V
Sbjct: 448 VSFNAKDIQIPVYDTFDGSD----LRV-------LSG---SISERIVDCIIRLPVKWETT 493
Query: 994 PKKKSHHI 1001
+ K+ HI
Sbjct: 494 TQFKATHI 501
Score = 63.5 bits (154), Expect = 4e-10
Identities = 44/269 (16%), Positives = 90/269 (33%), Gaps = 76/269 (28%)
Query: 470 YIEMDAASTRGINE--MAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP 527
I + I E A + E + + I+E T + F
Sbjct: 1673 TIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEH--STSYTF--------RSE 1722
Query: 528 KYIKFILATTE-PQKIP-ITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKF------E 579
K + L+ T+ Q P +T++ + + + ++ F E
Sbjct: 1723 KGL---LSATQFTQ--PALTLMEKAA---FEDLKSKGLIPADAT--------FAGHSLGE 1766
Query: 580 TSALNLIATGAQGSM--RDALSL-------TDQAINYSSEKITLNSM-----QEMLSIID 625
+AL A+ A M + + A+ + M + +
Sbjct: 1767 YAAL---ASLA-DVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMIAINPGRVAASFS 1822
Query: 626 QKYLIQILDALAEQDGNLILSIANKIEIYNLSYS-IV----LKDLSLLLHQISLIQISPE 680
Q+ L +++ + ++ G L + I N YN+ V L+ L + + ++ I++
Sbjct: 1823 QEALQYVVERVGKRTGWL-VEIVN----YNVENQQYVAAGDLRALDTVTNVLNFIKLQK- 1876
Query: 681 ILIKDSPNYNEIIQLSKKFNIEQI--QLF 707
I II+L K ++E++ LF
Sbjct: 1877 --ID-------IIELQKSLSLEEVEGHLF 1896
Score = 57.0 bits (137), Expect = 4e-08
Identities = 91/538 (16%), Positives = 160/538 (29%), Gaps = 183/538 (34%)
Query: 9 SKIDPK-------IWEIILKEKQR---QNNNI-ELIASENYTSLAVMEAQGTLLTNKYAE 57
S ++P + + L E + + N+I L A + + L+ N
Sbjct: 70 SLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTLVKTKELIKN---- 125
Query: 58 GYPGKRYYGGCKFIDL-IEKIAINRLKKIFNAEAANVQPHS--GSQANQAVFFSVL---- 110
Y +K + + L + N Q + G Q N +F L
Sbjct: 126 ------YITARIMAKRPFDKKSNSALFR--AVGEGNAQLVAIFGGQGNTDDYFEELRDLY 177
Query: 111 ---NP--GDTI--MGMSLQE--------GGHLTHGMMLNMSGKWFNSICYGLNKKEKI-D 154
+ GD I +L E T G+ + +W L D
Sbjct: 178 QTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNI---LEW-------LENPSNTPD 227
Query: 155 YKKVEYLAKKNKP---KLIIAGASAYSQYIDFERFYHIA-KNINSYFMVDMAHYAGLIAA 210
+YL + P LI G + Y+ + + SY H GL+ A
Sbjct: 228 ---KDYLL--SIPISCPLI--GVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTA 280
Query: 211 GEYPNPVPFA------DFITSTTHKSLR-----GPRGGFILMKKKY------KKIINSAV 253
V A F S K++ G R + Y I+ ++
Sbjct: 281 ------VAIAETDSWESFFVSV-RKAITVLFFIGVRC-----YEAYPNTSLPPSILEDSL 328
Query: 254 FPGIQGGP-LMHVIAAKAVAFKEV----------LKPDFKIYQKQV-VKNAKILSKILDQ 301
+G P M ++ + ++V L ++ + + N
Sbjct: 329 ENN-EGVPSPM--LSISNLTQEQVQDYVNKTNSHLPAGKQVE---ISLVNGA------KN 376
Query: 302 RGIRIVSGGTKSHIILV-DLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIR 360
+VSG +S L LR K A +++ IP K F++ R
Sbjct: 377 L---VVSGPPQSLYGLNLTLRKAK------------APSGLDQSRIPFSERKLKFSN--R 419
Query: 361 -LGSSAITTRGFSEL-----EIIKVVLARK---YRPSN-----FNTLIGQN------HIS 400
L + + S L ++I L + + + ++T G + IS
Sbjct: 420 FL---PVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSGSIS 476
Query: 401 KSLINALDKKRLH----------HAYLF--TGTRGVGKTTISRILAKCLNCIGIDGNG 446
+ +++ + + + H F G G+G T R DG G
Sbjct: 477 ERIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLT-HRNK---------DGTG 524
Score = 53.5 bits (128), Expect = 5e-07
Identities = 90/524 (17%), Positives = 146/524 (27%), Gaps = 212/524 (40%)
Query: 889 AKRLKELQLSHGRLKTG--TPPRI--------DKRTIDFSKM-----EEQIGDFDPVPVF 933
A + L LSHG L+ P + F+K+ E D +P
Sbjct: 3 AYSTRPLTLSHGSLEHVLLVPTASFFIASQLQE----QFNKILPEPTEGFAADDEPT--- 55
Query: 934 SVLGNINLHPKQLSCFITHTNEKTHN-----IIRS---EFKNSPIFSGK-IESIGPRYCP 984
+ L K L +++ E + ++ EF+N G I ++ +
Sbjct: 56 TP---AELVGKFLG-YVSSLVEPSKVGQFDQVLNLCLTEFENC-YLEGNDIHALAAKLLQ 110
Query: 985 SIEDKVYRFPKKKSHHIFLEPEGIVINEYYPNGISTSLPFEAQIE--LVQSIDGMKNANI 1042
+ + K K +I Y I PF+ + L +++ NA +
Sbjct: 111 ENDTTL---VKTKE----------LIKNYITARIMAKRPFDKKSNSALFRAVGE-GNAQL 156
Query: 1043 IRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQ 1102
AI F GQ N +EE L L+
Sbjct: 157 ----VAI-----------------------FGGQGNTDDYFEE-----L-----RDLY-- 177
Query: 1103 DRDPWIPGRDQAYLGVLVDDLITKGIQEPYRMFTSRAEYRL-NLREDNADLRLTEIGWKL 1161
Q Y VLV DLI + L L D
Sbjct: 178 ----------QTY-HVLVGDLI------------KFSAETLSELIRTTLDAE-------- 206
Query: 1162 GCVSYKQWKIFEKKREIITKELQRLKDTWI-NPSILNTGESERVLGKRIKHEYSLSNLLT 1220
K+F + I+ W+ NPS +Y LS ++
Sbjct: 207 --------KVFTQGLNIL---------EWLENPS------------NTPDKDYLLSIPIS 237
Query: 1221 WPN------VNYNTLTSLKGINGKNLYNT-----------------------EIYQEDIK 1251
P +Y L G L + E + ++
Sbjct: 238 CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVR 297
Query: 1252 KQLKI--------QLQYEGYILRQINEVEKNKINENLKLPHNLDYM-KIQSLSIEARQK- 1301
K + + Y L + ++ + N +P M I +L+ E Q
Sbjct: 298 KAITVLFFIGVRCYEAYPNTSLPP--SILEDSLENNEGVPS---PMLSISNLTQEQVQDY 352
Query: 1302 ---LNKYKPETIGQASRIS---G-----VT--PAALTLLLIYLK 1332
N + P G+ IS G V+ P +L L + L+
Sbjct: 353 VNKTNSHLPA--GKQVEISLVNGAKNLVVSGPPQSLYGLNLTLR 394
Score = 46.6 bits (110), Expect = 7e-05
Identities = 75/497 (15%), Positives = 149/497 (29%), Gaps = 159/497 (31%)
Query: 208 IAAGEYPNPVP--FADFITSTTHKSLRGPRGGF--ILMKKKYKKIINS--AVFPGIQGGP 261
AA + P F+ + G F +L + + ++G
Sbjct: 48 FAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVL-----NLCLTEFENCY--LEGND 100
Query: 262 LMHVIAAKAVAFKEVLKPDFKIYQKQVVKN---AKILSKILDQRG-----IRIVSGGTKS 313
+ H +AAK + + K K+++KN A+I++K + R V G +
Sbjct: 101 I-HALAAKLLQEND--TTLVK--TKELIKNYITARIMAKRPFDKKSNSALFRAVGEG-NA 154
Query: 314 HIILV------------DLRN--KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGI 359
++ + +LR+ + + + I SA + D EK FT G+
Sbjct: 155 QLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK-VFTQGL 213
Query: 360 RLGS-----------SAITTRGFSELEIIKV-------VLARK--YRPSNFNTLI-GQNH 398
+ + + S +I V V A+ + P + + G
Sbjct: 214 NILEWLENPSNTPDKDYLLSIPIS-CPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG 272
Query: 399 ISKSLINAL------DKKRLHHA------YLF-TGTRG---VGKTTIS-RILAKCLNCIG 441
S+ L+ A+ + + LF G R T++ IL L
Sbjct: 273 HSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLE--- 329
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQL-LEQTIY-APINAR 499
+ G + + + + ++ T + L + + + +N
Sbjct: 330 -NNEGVPSPM------LSIS---NLTQEQVQDYVNKTN-----SHLPAGKQVEISLVNGA 374
Query: 500 YKIYVI-----DEVHMLTHHAFNAMLKTLEEPPKY----IKFILATTEPQKI-------P 543
K V+ L + N L+ + P I F +K+ P
Sbjct: 375 -KNLVVSGPPQS----L--YGLNLTLRKAKAPSGLDQSRIPF-----SERKLKFSNRFLP 422
Query: 544 ITV------LSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNL----IATGAQGS 593
+ L +++ D L K N+ F + + G+
Sbjct: 423 VASPFHSHLLVPASD-----LINKD--------LVKNNVSFNAKDIQIPVYDTFDGS--D 467
Query: 594 MRD-----ALSLTDQAI 605
+R + + D I
Sbjct: 468 LRVLSGSISERIVDCII 484
Score = 46.2 bits (109), Expect = 1e-04
Identities = 46/296 (15%), Positives = 86/296 (29%), Gaps = 109/296 (36%)
Query: 70 FIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEG-GHLT 128
F + K + +F G + +A + + +I+ SL+ G +
Sbjct: 292 FFVSVRKA----ITVLF---------FIGVRCYEA--YPNTSLPPSILEDSLENNEGVPS 336
Query: 129 HGMMLNMSGKWFNSICYGLNKKE---KIDY--------KKVEYLAKKNKPK-LIIAG--- 173
ML SI L +++ ++ K+V ++ N K L+++G
Sbjct: 337 P--ML--------SIS-NLTQEQVQDYVNKTNSHLPAGKQV-EISLVNGAKNLVVSGPPQ 384
Query: 174 --------------ASAYSQY-IDFE--------RF------YH--IAKNINSYFMVDMA 202
S Q I F RF +H + + D+
Sbjct: 385 SLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHLLVPASDLINKDLV 444
Query: 203 HYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAV-FPGIQGGP 261
A + PV + T LR G + ++ II V +
Sbjct: 445 KNNVSFNAKDIQIPV----YDTFDG-SDLRVLSGS--ISERIVDCIIRLPVKWETTTQFK 497
Query: 262 LMHVIAAKAVAFKEVLKPDF------KIYQKQVVKNAKILSKILDQRGIRIVSGGT 311
H++ DF + + + D G+R++ GT
Sbjct: 498 ATHIL-------------DFGPGGASGL--------GVLTHRNKDGTGVRVIVAGT 532
Score = 43.5 bits (102), Expect = 6e-04
Identities = 39/239 (16%), Positives = 69/239 (28%), Gaps = 72/239 (30%)
Query: 909 RIDKRTIDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEK--THNIIRSEFK 966
R D ++ G FS+L + +P L+ K N F+
Sbjct: 1648 RADN------HFKDTYG-------FSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFE 1694
Query: 967 NSPIFSGKIESIGPRYCPSIEDKVYRFPKKK--------------SHHIF--LEPEGIVI 1010
K E I +R K F L+ +G++
Sbjct: 1695 TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIP 1754
Query: 1011 NEYYPNG-----------ISTSLPFEAQIELV------------QSIDGMKNANIIRPGY 1047
+ G ++ + E+ +E+V + G N +I
Sbjct: 1755 ADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDELGRSNYGMI---- 1810
Query: 1048 AIEYDYFNPCNLKSSLETKQIHGLFFAGQINGTTGYE-EAA------SQGLLAGLNAAL 1099
AI NP + +S + + + ++ TG+ E Q + AG AL
Sbjct: 1811 AI-----NPGRVAASFSQEALQ--YVVERVGKRTGWLVEIVNYNVENQQYVAAGDLRAL 1862
Score = 43.1 bits (101), Expect = 7e-04
Identities = 49/308 (15%), Positives = 93/308 (30%), Gaps = 113/308 (36%)
Query: 98 GSQA---------NQAVFFSVLNPGDTIM----GMSLQE-------------GGHLTHGM 131
GSQ V N D G S+ + GG +
Sbjct: 1625 GSQEQGMGMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRI 1684
Query: 132 MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAG------ASAYSQYIDFER 185
N S F +I G K EKI + E+ A+ ++Q
Sbjct: 1685 RENYSAMIFETIVDGKLKTEKIFKEINEHS-----TSYTFRSEKGLLSATQFTQ------ 1733
Query: 186 FYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFA--------------DFIT-STTHKS 230
A + +++ A + L + G P FA D ++ + +
Sbjct: 1734 ---PA--L---TLMEKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEV 1785
Query: 231 LRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAA----------KAVAFKEVLKPD 280
+ RG + AV P + G + + A A + V++
Sbjct: 1786 VFY-RG----------MTMQVAV-PRDELGRSNYGMIAINPGRVAASFSQEALQYVVE-- 1831
Query: 281 FKIYQK-----QVV-KNAKILSKILDQRGIRIVSGGTKSHI-----ILVDLRNKKI-TGK 328
++ ++ ++V N + V+ G + +L ++ +KI +
Sbjct: 1832 -RVGKRTGWLVEIVNYNV---------ENQQYVAAGDLRALDTVTNVLNFIKLQKIDIIE 1881
Query: 329 IAESI-LE 335
+ +S+ LE
Sbjct: 1882 LQKSLSLE 1889
Score = 40.4 bits (94), Expect = 0.005
Identities = 61/346 (17%), Positives = 105/346 (30%), Gaps = 136/346 (39%)
Query: 962 RSEFKNSPIFSGKI-----ESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEYYPN 1016
+K S + Y SI D V P + H F +G I E Y
Sbjct: 1633 MDLYKTSKAAQ-DVWNRADNHFKDTYGFSILDIVINNPVNLTIH-FGGEKGKRIRENY-- 1688
Query: 1017 GISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCNLKSSLETKQIHGLFFAGQ 1076
+++ FE +DG L+T++I F
Sbjct: 1689 ---SAMIFE------TIVDG-------------------------KLKTEKI----FKEI 1710
Query: 1077 INGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGV---LVDDLITKGIQEPYR 1133
+T Y + +GLL +A F+Q P A + +DL +KG+
Sbjct: 1711 NEHSTSYTFRSEKGLL---SATQFTQ------P----ALTLMEKAAFEDLKSKGLIPADA 1757
Query: 1134 MFTSRA-----EY--------RLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKR-EII 1179
F A EY +++ E ++ V R +
Sbjct: 1758 TF---AGHSLGEYAALASLADVMSI-ESLVEV-----------V---------FYRGMTM 1793
Query: 1180 TKELQRLKDTW-------INPSILNTG---ESERVLGKRIKHEYSLSNLLTWPNVNYN-- 1227
+ R + INP + E+ + + +R+ + L VNYN
Sbjct: 1794 QVAVPRDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKR---TGWLVEI-VNYNVE 1849
Query: 1228 --------------TLTS-LKGINGKNLYNTEIYQ----EDIKKQL 1254
T+T+ L I + + E+ + E+++ L
Sbjct: 1850 NQQYVAAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGHL 1895
Score = 30.4 bits (68), Expect = 6.0
Identities = 25/136 (18%), Positives = 44/136 (32%), Gaps = 40/136 (29%)
Query: 1233 KGINGKNLYNT-----EIYQEDIKKQLKIQLQYEGYILRQINEVEKN------------- 1274
+G+ G +LY T +++ K G+ + I V N
Sbjct: 1629 QGM-GMDLYKTSKAAQDVW-NRADNHFKDTY---GFSILDI--VINNPVNLTIHFGGEKG 1681
Query: 1275 -KINEN---LKLPHNLD-YMKIQSLSIEARQKLNKYKPETIGQASRISGVT----PAALT 1325
+I EN + +D +K + + E + Y + +S T PA
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFR--SEKGLLS-ATQFTQPALTL 1738
Query: 1326 L-LLIY--LKSGFLKN 1338
+ + LKS L
Sbjct: 1739 MEKAAFEDLKSKGLIP 1754
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 89.9 bits (222), Expect = 3e-18
Identities = 100/629 (15%), Positives = 200/629 (31%), Gaps = 152/629 (24%)
Query: 150 KEKIDYKKVE-----YLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHY 204
+ D K V+ L+K+ +I++ + F + + F+ ++
Sbjct: 30 VDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRI 89
Query: 205 AGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSA-VFPGIQGGPLM 263
Y F+ S R P + ++ ++ N VF
Sbjct: 90 -------NYK-------FLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAK------Y 129
Query: 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSG--GT-KSHIILVDL 320
+V + Y K ++ A L ++ + + ++ G G+ K+ + L
Sbjct: 130 NV-------------SRLQPYLK--LRQA--LLELRPAKNV-LIDGVLGSGKTWVALDVC 171
Query: 321 RNKKIT----GKI----------AESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAI 366
+ K+ KI E++LE + + PN + +S I+L +I
Sbjct: 172 LSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQID-PNWTSRSDHSSNIKLRIHSI 230
Query: 367 TTRGFSELEIIKVVLARKYRPS--------------NFN----TLIGQNHIS--KSLINA 406
L + ++ Y FN L+ + K + +
Sbjct: 231 QAE-LRRL-----LKSKPYENCLLVLLNVQNAKAWNAFNLSCKILL----TTRFKQVTDF 280
Query: 407 LDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC 466
L H L + + + +L K L+C D + + +
Sbjct: 281 LSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQD----LPREVL-TTNPRR------ 329
Query: 467 FMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
+ + A S R + + +K D++ + + N L+ E
Sbjct: 330 ----LSIIAESIR---DGLATWD---------NWKHVNCDKLTTIIESSLNV-LEPAEYR 372
Query: 527 PKYIKF-ILATTEPQ--KIPITVLSRCIQFNLKKMLHHDIVNNLC-YILNKENIKFETSA 582
+ + + P IP +LS I F++ K +VN L Y L ++ K T +
Sbjct: 373 KMFDRLSVF----PPSAHIPTILLSL-IWFDVIKSDVMVVVNKLHKYSLVEKQPKESTIS 427
Query: 583 LNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILD---ALAEQ 639
+ I + + + +L +++ + T +S + +DQ Y + E
Sbjct: 428 IPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ-YFYSHIGHHLKNIEH 486
Query: 640 DG------NLILS---IANKIE----IYNLSYSI--VLKDLSLLLHQISLIQISPEILIK 684
+ L + KI +N S SI L+ L I E L+
Sbjct: 487 PERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVN 546
Query: 685 D----SPNYNEIIQLSKKFNIEQIQLFYQ 709
P E + SK ++ +I L +
Sbjct: 547 AILDFLPKIEENLICSKYTDLLRIALMAE 575
Score = 84.9 bits (209), Expect = 1e-16
Identities = 118/760 (15%), Positives = 220/760 (28%), Gaps = 240/760 (31%)
Query: 241 MKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQ-----KQVVKNAKIL 295
+ +YK I+ V F++ +F K ++ +I
Sbjct: 14 HQYQYKDIL--------------SV-------FEDAFVDNFDCKDVQDMPKSILSKEEI- 51
Query: 296 SKIL-----DQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILES-----ANIICNKNS 345
I+ +R+ + + +++ K E +L + I +
Sbjct: 52 DHIIMSKDAVSGTLRL--------FWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR 103
Query: 346 IPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVVLARKYRPSNFNTLIGQNHISKSLIN 405
P+ + Y RL + + F++ + R + L
Sbjct: 104 QPSMMTRMYIEQRDRLYND---NQVFAKYNV--------SRLQPYLKLR----------Q 142
Query: 406 ALDKKRLHHAYLFT-GTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDN 464
AL + R + G G GKT +A C V K+D
Sbjct: 143 ALLELR-PAKNVLIDGVLGSGKTW----VA---------------LDVCLSYKVQCKMDF 182
Query: 465 GCFMDYIEM-DAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTL 523
F ++ + + S + EM Q L I +R + H+ N L+ +
Sbjct: 183 KIF--WLNLKNCNSPETVLEMLQKLLYQIDPNWTSR------------SDHSSNIKLR-I 227
Query: 524 EEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIK-FETSA 582
++ +L + + L ++ N+ N + F S
Sbjct: 228 HSIQAELRRLLKSKP----------------YENCL--LVLLNVQ---NAKAWNAFNLSC 266
Query: 583 LNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ------EMLSIIDQKYLIQILDAL 636
L+ T R +TD ++ I+L+ E+ S++ KYL L
Sbjct: 267 KILLTT------RFK-QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL-LKYLDCRPQDL 318
Query: 637 AEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILIKDSPNYNEIIQLS 696
+ + +S+I E I+D
Sbjct: 319 PRE--------VLTT--------------NPRR--LSII---AE-SIRDGLA---TWDNW 347
Query: 697 KKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRML-VFQTLHNHLDYNNLKNSKD 755
K N +++ + S+ N LE P EY + L VF
Sbjct: 348 KHVNCDKLTTIIESSL---NVLE--PAEYR----KMFDRLSVFP--------------PS 384
Query: 756 TKGNLI-HAVLTVL-DAMGGIMAIATDKSGIQFRILNSSKGAAVRATRAQVDRILYKQAI 813
I +L+++ + ++N + V++ + I
Sbjct: 385 AH---IPTILLSLIWFDV---------IKSDVMVVVNKL------HKYSLVEKQPKESTI 426
Query: 814 RFYLENQLNLYL-FQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTT--GTFLNGKIHI 870
++YL + ++++ I+ I F S +I F + HI
Sbjct: 427 SIP-----SIYLELKVKLENEYALHRSIVDHY-NIPKTFDSDDLIPPYLDQYFYS---HI 477
Query: 871 G--LKSYS-AGRFGDFSTTSLAKRLKELQLSHGRLKTGTPPRIDKRTIDFSKMEEQIGDF 927
G LK+ R F L R E ++ H I + I D
Sbjct: 478 GHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDN 537
Query: 928 DPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRSEFKN 967
D P + L N L F+ E N+I S++ +
Sbjct: 538 D--PKYERLVNAILD------FLPKIEE---NLICSKYTD 566
Score = 77.6 bits (190), Expect = 2e-14
Identities = 103/605 (17%), Positives = 178/605 (29%), Gaps = 183/605 (30%)
Query: 816 YLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGI---------KFFSKTVILTTGTFLNG 866
+++ L +EE+D +I+ + + G + + F + V+ FL
Sbjct: 37 DVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMS 96
Query: 867 KIH-------IGLKSYSAGR---FGD---FS---------TTSLAKRLKELQLS-----H 899
I + + Y R + D F+ L + L EL+ +
Sbjct: 97 PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156
Query: 900 GRLKTGTPPRIDKR--TIDFSKMEEQIGDFDPVPVFSV-LGNIN---LHPKQLSCFITHT 953
G L +G K +D + +F + L N N + L
Sbjct: 157 GVLGSG------KTWVALDVCLSYKVQCKM-DFKIFWLNLKNCNSPETVLEML------- 202
Query: 954 NEKTHNIIRSEFKNSPIFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVINEY 1013
+K I + + S I SI+ ++ R K K
Sbjct: 203 -QKLLYQIDPNWTSRSDHSSNI----KLRIHSIQAELRRLLKSKP--------------- 242
Query: 1014 YPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNP-CNLKSSLETKQIHGLF 1072
Y N L LV + ++NA + FN C K L T+
Sbjct: 243 YEN----CL-------LV--LLNVQNAKAW--------NAFNLSC--KILLTTRFKQVTD 279
Query: 1073 FAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGVLVDDL---ITKG-- 1127
F T + S L +L + YL DL +
Sbjct: 280 FLSAATTTHISLDHHSMTLTPDEVKSLLLK------------YLDCRPQDLPREVLTTNP 327
Query: 1128 -----IQEPYRMFTSRAEYRLNLREDNADLRLTE-IGWKLGCVS-------YKQWKIFEK 1174
I E R + + + N D +LT I L + + + +F
Sbjct: 328 RRLSIIAESIRDGLATWDN---WKHVNCD-KLTTIIESSLNVLEPAEYRKMFDRLSVFPP 383
Query: 1175 KREIITKELQRLKDTWINPSILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTSL-- 1232
I T L + W + + V+ K H+YSL + P + ++ S+
Sbjct: 384 SAHIPTILLSLI---WFDVI---KSDVMVVVNKL--HKYSL--VEKQPKESTISIPSIYL 433
Query: 1233 ----KGINGKNLYNT--EIYQE----DIKKQLKIQL-----QYEGYILRQINEVEKNKIN 1277
K N L+ + + Y D + L + G+ L+ I E+ +
Sbjct: 434 ELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLF 493
Query: 1278 ENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPAALTLLLIYLKSGFLK 1337
+ L + +++ QK+ A SG L L Y K
Sbjct: 494 RMVFL--DFRFLE---------QKIRH-----DSTAWNASGSILNTLQQLKFY------K 531
Query: 1338 NFIKK 1342
+I
Sbjct: 532 PYICD 536
Score = 58.7 bits (141), Expect = 1e-08
Identities = 65/551 (11%), Positives = 153/551 (27%), Gaps = 171/551 (31%)
Query: 915 IDFSKMEEQIGDFDPVPVFSVLGNINLHPKQLSCFITHTNEKTHNIIRS-EFK---NSP- 969
+DF E Q D + VF C + +I+ E S
Sbjct: 7 MDFETGEHQYQYKDILSVF--EDAFV---DNFDC--KDVQDMPKSILSKEEIDHIIMSKD 59
Query: 970 ----------IFSGKIESIGPRYCPSIEDKVYRFPKKKSHHIFLEPEGIVI--NEYYPNG 1017
K E + ++ + Y+F +P + E
Sbjct: 60 AVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL 119
Query: 1018 ISTSLPF--------EAQIELVQS-----------IDGMKNANIIRPGYAIEYDYFNPCN 1058
+ + F + ++L Q+ IDG+ + G
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGS-----G------------ 162
Query: 1059 LKSSL--ETKQIHGL--FFAGQIN-GTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQ 1113
K+ + + + + +I + +L L L Q W D
Sbjct: 163 -KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPET-VLEMLQ-KLLYQIDPNWTSRSDH 219
Query: 1114 AY-------------------------LGVLVDDLITKGIQEPY----RM-FTSR----- 1138
+ L VL ++ + ++ T+R
Sbjct: 220 SSNIKLRIHSIQAELRRLLKSKPYENCLLVL-LNVQNAKAWNAFNLSCKILLTTRFKQVT 278
Query: 1139 ----AEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKELQRLKDTWINPS 1194
A ++ D+ + LT + + K + ++L R T NP
Sbjct: 279 DFLSAATTTHISLDHHSMTLTP---------DEVKSLLLKYLDCRPQDLPREVLT-TNPR 328
Query: 1195 ILNTGESERVLGKRIKHEYSLSNLLTWPNVNYNTLTS--------LKGINGKNLYNT-EI 1245
L+ ++ + I+ + + W +VN + LT+ L+ + +++ +
Sbjct: 329 RLS------IIAESIRDGLATWD--NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV 380
Query: 1246 YQEDIK---KQLKI---QLQYE--GYILRQINE---VEKNKINENLKLPHNLDYMKIQSL 1294
+ L + + ++ ++++ VEK + + ++ Y++++
Sbjct: 381 FPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISI-PSI-YLELKVK 438
Query: 1295 S----------IEARQKLNKYKPETIGQASR-----------ISGVTPAALTLLL--IYL 1331
++ + + + + + L ++L
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498
Query: 1332 KSGFLKNFIKK 1342
FL+ I+
Sbjct: 499 DFRFLEQKIRH 509
Score = 37.9 bits (87), Expect = 0.025
Identities = 18/121 (14%), Positives = 37/121 (30%), Gaps = 23/121 (19%)
Query: 139 WFNSICYGLNKKEKID----YKKVEYL------AK-KNKPKLIIAGASAYSQYIDFERFY 187
+++ I + L E + ++ V +L K ++ A S + +FY
Sbjct: 473 FYSHIGHHLKNIEHPERMTLFRMV-FLDFRFLEQKIRHDSTAWNASGSILNTLQQL-KFY 530
Query: 188 --HIAKNINSY--FMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+I N Y + + + L E + D + +L
Sbjct: 531 KPYICDNDPKYERLVNAILDF--LPKIEENLICSKYTDLL----RIALMAEDEAIFEEAH 584
Query: 244 K 244
K
Sbjct: 585 K 585
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp
loader, sliding clamp, primer-TEM DNA, DNA binding
protein-DNA complex; HET: DNA ADP 08T; 3.20A
{Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Length = 324
Score = 82.4 bits (204), Expect = 7e-17
Identities = 51/325 (15%), Positives = 97/325 (29%), Gaps = 75/325 (23%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRPS + I ++ + K ++ H L + + G GKTT+++ L +N
Sbjct: 19 KYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNA---- 74
Query: 444 GNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN-------EMAQLLEQTIYAPI 496
D + ++ S I+ A A
Sbjct: 75 -------------------------DMMFVNG-SDCKIDFVRGPLTNFASA------ASF 102
Query: 497 NARYKIYVIDEV-HMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKI--PITVLSRCIQF 553
+ R K+ VIDE + + +E I+ I P+ SRC
Sbjct: 103 DGRQKVIVIDEFDRSGLAESQRHLRSFMEAYSSNCSIIITANNIDGIIKPL--QSRCRVI 160
Query: 554 -------NLKKMLHHDIVNNLCYILNKENIKF-ETSALNLIATGAQGSMRDALSLTDQAI 605
K + ++ L I E I + + + R + I
Sbjct: 161 TFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDFR-------KTI 213
Query: 606 NY-----SSEKITLNSMQEMLSIIDQKYLI-QILDALAEQDGNLILSIANKIEIYNLSYS 659
S + + + + + I +L++L +D + + Y YS
Sbjct: 214 GELDSYSSKGVLDAGILSL---VTNDRGAIDDVLESLKNKD---VKQLRALAPKYAADYS 267
Query: 660 IVLKDLSLLLHQISLIQISPEILIK 684
+ L+ ++ Q +
Sbjct: 268 WFVGKLAEEIYSRVTPQSIIRMYEI 292
>3pvs_A Replication-associated recombination protein A; maintenance of
genome stability Pro recombination; 2.50A {Escherichia
coli}
Length = 447
Score = 60.2 bits (147), Expect = 2e-09
Identities = 60/271 (22%), Positives = 96/271 (35%), Gaps = 73/271 (26%)
Query: 381 LARKYRPSNFNTLIGQNHI---SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
LA + RP N IGQ H+ K L A++ LH + + G G GKTT++ ++A+
Sbjct: 16 LAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLH-SMILWGPPGTGKTTLAEVIARYA 74
Query: 438 NCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPIN 497
N D + A ++ G+ E+ + +E+
Sbjct: 75 NA-----------------------------DVERISAVTS-GVKEIREAIERARQNRNA 104
Query: 498 ARYKIYVIDEVHMLTHHAFN-----AMLKTLEEPPKYIKFILATTE--------PQKIPI 544
R I +DEV H FN A L +E+ I FI ATTE
Sbjct: 105 GRRTILFVDEV-----HRFNKSQQDAFLPHIED--GTITFIGATTENPSFELNSA----- 152
Query: 545 TVLSRCIQFNLKKMLHHDI-------VNNLCYILNKENIKFETSALNLIATGAQGSMRDA 597
+LSR + LK + DI + + ++I IA G R A
Sbjct: 153 -LLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRA 211
Query: 598 LSLTDQAINYSSE------KITLNSMQEMLS 622
L+ + + + + + E+
Sbjct: 212 LNTLEMMADMAEVDDSGKRVLKPELLTEIAG 242
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 57.9 bits (139), Expect = 1e-08
Identities = 62/358 (17%), Positives = 108/358 (30%), Gaps = 54/358 (15%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
E + + E LKE N L +S Y L + +++A G Y
Sbjct: 15 EKIRVPSREEREAALKE--AGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAY 72
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
G + ++ + K++FN + + H G A +F +L
Sbjct: 73 AGSRNYYDLKD----KAKELFNYDYI-IPAHQGRGAENILFPVLLKYKQKEGKAKNPVFI 127
Query: 126 HLTH-----GMMLNMSGKWFNSICYGL-------NKKEKIDYKKVEYLAKKNKPKLI--- 170
H + K N + + K D KK++ ++ I
Sbjct: 128 SNFHFDTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAI 187
Query: 171 -------IAGASAYSQYIDFERFYHIAKNINSYFMVDMAH--------------YAGLIA 209
AG S + + Y IAK + ++D A Y
Sbjct: 188 VSTVTCNSAGGQPVSM-SNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATI 246
Query: 210 AGEYPNPVPFADFITSTTHKSLRGPRGGFILMK------KKYKKIINSAVFPGIQGGPLM 263
+ +AD +T + K GG + ++ ++ GG
Sbjct: 247 KEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAG 306
Query: 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLR 321
+AA +E + + Y + K L L + GI I T H + VD +
Sbjct: 307 RDMAAMVQGLEEGTEEE---YLHYRIGQVKYLGDRLREAGIPIQY-PTGGHAVFVDCK 360
>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A
{Staphylococcus aureus}
Length = 446
Score = 56.8 bits (137), Expect = 3e-08
Identities = 38/261 (14%), Positives = 90/261 (34%), Gaps = 27/261 (10%)
Query: 99 SQANQAVFFSVLNPGDTIMGMSLQEGGH--LTHGMMLNMSG---KWFN-SICYGLNKKEK 152
+ +V S I+ + H + H + +S + N K
Sbjct: 82 TSGILSVIQSFSQKKGDIL---MARNVHKSVLHALD--ISQQEGHFIETHQSPLTNHYNK 136
Query: 153 IDYKKVEYLAKKNKPKLIIAGASAYSQYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAG 211
++ ++ + KL++ Y + E +N ++D AH A G
Sbjct: 137 VNLSRLNN----DGHKLVVLTYPNYYGETFNVEEVIKSLHQLNIPVLIDEAHGAHFGLQG 192
Query: 212 EYPNPVPF-ADFITSTTHKSLRGPRGGFILMKKK---YKKIINSAVFPGIQGGPLMHVIA 267
+ + + AD++ + HK+L G +L K Y++ I + P ++A
Sbjct: 193 FPDSTLNYQADYVVQSFHKTLPALTMGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMA 252
Query: 268 AKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG 327
+ A + D ++ + + + L+ +G ++ ++ ++ + TG
Sbjct: 253 SLESAAQFYKTYDSTLFFAKRAQLI----ECLENKGFEMLQVDDPLKLL---IKYEGFTG 305
Query: 328 KIAESILESANIICNKNSIPN 348
++ +A+I
Sbjct: 306 HDIQNWFMNAHIYLELADDYQ 326
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 384
Score = 51.7 bits (123), Expect = 9e-07
Identities = 38/299 (12%), Positives = 88/299 (29%), Gaps = 26/299 (8%)
Query: 378 KVVLARKYRPSNFNTLIG----QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRIL 433
KV + + + ++ + + G G GKT +S+ +
Sbjct: 10 KVFIDPLSVFKE---IPFREDILRDAAIAIRYFVKNEVKFSNLF-LGLTGTGKTFVSKYI 65
Query: 434 AKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA----STRGINEMAQLLE 489
+ + + + C ++ + S
Sbjct: 66 FNEIEEVKKEDEEYKDVKQA--YVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYI 123
Query: 490 QTIYAPINARYKIYVIDEV-HMLTHHAFNAMLKTLEEPPKYIKFILATTE---PQKIPIT 545
I I +DEV ++ + +L L I I+ + + +
Sbjct: 124 DKIKNGTRNIRAIIYLDEVDTLVKRRGGDIVLYQLLRSDANISVIMISNDINVRDYMEPR 183
Query: 546 VLSRCIQFNLKKMLHHDIVNNLCYILNKENIK---FETSALNLIA---TGAQGSMRDALS 599
VLS + K + + + + + ++ L+ IA G R A++
Sbjct: 184 VLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVN 243
Query: 600 LTDQAINY--SSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNL 656
L +A I + + + +Q+ LI+ + AL + S+ ++ +
Sbjct: 244 LLFRAAQLASGGGIIRKEHVDKAIVDYEQERLIEAVKALPFHYKLALRSLIESEDVMSA 302
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 46.3 bits (109), Expect = 6e-05
Identities = 44/340 (12%), Positives = 96/340 (28%), Gaps = 43/340 (12%)
Query: 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGH--LTHGMML 133
+ ++F A+ + S +N+ + + + D ++ + H + G+ML
Sbjct: 208 GESEKYAARVFGADRSWSVVVGTSGSNRTIMQACMTDNDVVV---VDRNCHKSIEQGLML 264
Query: 134 -NMSGKWFNSI-----CYGLNKKEKIDYKKVEYLAKKN---------KPKLIIAGASAYS 178
+ G +++ + ++ ++ KP + Y
Sbjct: 265 TGAKPVYMVPSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTYD 324
Query: 179 QYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF----------ADFITSTT 227
+ + + + + D A Y Y + F T +T
Sbjct: 325 GVCYNAKEAQDLLEKTSDRLHFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHST 384
Query: 228 HKSLRGPR-GGFILMKKKYKKI----INSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFK 282
HK L +I +++ I N A PL + A+ VA +
Sbjct: 385 HKLLNALSQASYIHVREGRGAINFSRFNQAYMMHATTSPLYAICASNDVAVSMMDGNSGL 444
Query: 283 IYQKQVVKNA-KILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIIC 341
++V+ A + G ++ TGK + ++
Sbjct: 445 SLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLLT 504
Query: 342 NKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVVL 381
+ G +S L+ IKV +
Sbjct: 505 ------TVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSI 538
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding,
chromatin regulator, growth regulation, hydrolase,
nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo
sapiens} PDB: 2xsz_A*
Length = 456
Score = 45.7 bits (108), Expect = 8e-05
Identities = 31/157 (19%), Positives = 57/157 (36%), Gaps = 18/157 (11%)
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEP---------PKYIKFILATTE---PQKIPITVLS 548
+ +DEVHML F + + LE + I T + P IP+ +L
Sbjct: 297 GVLFVDEVHMLDIECFTYLHRALESSIAPIVIFASNRGNCVIRGTEDITSPHGIPLDLLD 356
Query: 549 RCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIAT-GAQGSMRDALSL----TDQ 603
R + ++ + E I ALN + G + ++R ++ L
Sbjct: 357 RVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLL 416
Query: 604 AINYSSEKITLNSMQEMLSI-IDQKYLIQILDALAEQ 639
A + I ++E+ + D K +IL ++
Sbjct: 417 AKINGKDSIEKEHVEEISELFYDAKSSAKILADQQDK 453
Score = 37.3 bits (86), Expect = 0.031
Identities = 28/160 (17%), Positives = 53/160 (33%), Gaps = 27/160 (16%)
Query: 386 RPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
+ L+GQ + ++ ++ KK A L G G GKT ++ +A+ L
Sbjct: 32 AKQAASGLVGQENAREACGVIVELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELG--- 88
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYK 501
+ P C M E+ + + + + + I I +
Sbjct: 89 -------SKVPF------------CPMVGSEVYSTEIKKTEVLMENFRRAIGLRIKETKE 129
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQK 541
+Y EV LT + + ++ L T + K
Sbjct: 130 VY-EGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTK 168
>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme
biosynthesis, pyridoxal PHOS dependent, transferase,
acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus}
SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*
Length = 401
Score = 44.5 bits (106), Expect = 2e-04
Identities = 65/281 (23%), Positives = 96/281 (34%), Gaps = 43/281 (15%)
Query: 80 NRLKKIFNAEAANVQPHSGSQANQAVFFS--VLNPGDTIMGMSLQEGGHLTHGMMLNMSG 137
+ + EAA V S AN A + VL PG I H
Sbjct: 98 AEIAGLHQKEAALVFS-SAYNANDATLSTLRVLFPGLIIYS---DSLNH----------- 142
Query: 138 KWFNSICYG--LNKKEKIDYK--KVEYL------AKKNKPKLIIAGASAYSQYIDF---E 184
S+ G N K ++ V +L PKLI A S YS DF +
Sbjct: 143 ---ASMIEGIKRNAGPKRIFRHNDVAHLRELIAADDPAAPKLI-AFESVYSMDGDFGPIK 198
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAA-----GEYPNPVPFADFITSTTHKSLRGPRGGFI 239
IA+ + +D H G+ E + D T K+ G GG+I
Sbjct: 199 EICDIAEEFGALTYIDEVHAVGMYGPRGAGVAERDGLMHRIDIFNGTLAKAY-GVFGGYI 257
Query: 240 LMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLK-PDFKIYQKQVVKNAKILSKI 298
+ + S I L IAA A A LK + + + +AK+L
Sbjct: 258 AASARMVDAVRSYAPGFIFSTSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMR 317
Query: 299 LDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339
L G+ I SHI+ V + + T +++ +L +
Sbjct: 318 LKALGMPI--IDHGSHIVPVVIGDPVHTKAVSDMLLSDYGV 356
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 42.7 bits (100), Expect = 2e-04
Identities = 11/37 (29%), Positives = 18/37 (48%)
Query: 408 DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
HH Y+ G G GK+ ++ +A L+ +DG
Sbjct: 3 TTNHDHHIYVLMGVSGSGKSAVASEVAHQLHAAFLDG 39
>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism,
transferase; HET: PLP; 2.30A {Coxiella burnetii}
Length = 399
Score = 44.1 bits (105), Expect = 2e-04
Identities = 58/265 (21%), Positives = 100/265 (37%), Gaps = 52/265 (19%)
Query: 97 SGSQANQAVFFSVLNPGDTIMG-----MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151
S AN +F ++L P D I+ S+ +G L Y N
Sbjct: 111 SCFDANGGLFETLLGPEDAIISDELNHASIIDGIRLCKAQR----------YRYKNNAMG 160
Query: 152 KIDYKKVEYLAKKNKPKLIIA-------GASAYSQYIDFERFYHIAKNINSYFMVDMAHY 204
++ K E K + KLI G A D + +A N+ MVD +H
Sbjct: 161 DLEAKLKEADEKGARFKLIATDGVFSMDGIIA-----DLKSICDLADKYNALVMVDDSHA 215
Query: 205 AGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKK-IINSA---VF- 254
G I EY D +T T K+L G GG+ K+ + + N + +F
Sbjct: 216 VGFIGENGRGTPEYCGVADRVDILTGTLGKALGGASGGYTSGHKEIIEWLRNRSRPYLFS 275
Query: 255 ----PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGG 310
P ++A E+LK + +KQ+ +N++ +++ G ++
Sbjct: 276 NTVAPV--------IVATSLKVL-ELLKTEGPQLRKQLQENSRYFRAGMEKLGFQL--VP 324
Query: 311 TKSHIILVDLRNKKITGKIAESILE 335
II V L + ++ +A+ +L+
Sbjct: 325 GNHPIIPVMLGDAQLATNMADHLLQ 349
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate
dependent decarboxylase, acid stress stringent response;
HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Length = 715
Score = 42.0 bits (98), Expect = 0.002
Identities = 33/190 (17%), Positives = 62/190 (32%), Gaps = 26/190 (13%)
Query: 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGH--LTHGMML 133
K A + ++FNA+ + + + S AN+ V G TI+ + H LTH MM+
Sbjct: 198 KEAEQYIARVFNADRSYMVTNGTSTANKIVGMYSAPAGSTIL---IDRNCHKSLTHLMMM 254
Query: 134 -NMSGKWFN------SICYGLN----KKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYID 182
+++ +F I G+ + I + E +I ++ +
Sbjct: 255 SDVTPIYFRPTRNAYGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTYDGLLYN 314
Query: 183 FERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--------ADFITSTTHKSLRGP 234
+ + D A + Y + T +THK L
Sbjct: 315 TDFIKKTLDVKS--IHFDSAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAF 372
Query: 235 RGGFILMKKK 244
++ K
Sbjct: 373 SQASMIHVKG 382
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 41.2 bits (96), Expect = 0.003
Identities = 27/197 (13%), Positives = 50/197 (25%), Gaps = 32/197 (16%)
Query: 76 KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGH---LTHGMM 132
A +++NA+ S AN V ++++ GD ++ H +
Sbjct: 176 VAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVL---FDRNNHKSVYNSALA 232
Query: 133 L-NMSGKWFN------SICYGL--------NKKEKIDYKKVEYLAKKNKPKLIIAGASAY 177
+ + G+ +E E K +L + Y
Sbjct: 233 MAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTY 292
Query: 178 SQYI-DFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN----------PVPFADFITST 226
I + ++ Y D A N P + +
Sbjct: 293 DGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQS 352
Query: 227 THKSLRGPRGGFILMKK 243
HK G + KK
Sbjct: 353 VHKQQAGFSQTSQIHKK 369
>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate
COA ligase, pyridoxal phosphate, COEN transferase,
structural genomics; HET: PLP; 2.00A {Escherichia coli}
SCOP: c.67.1.4
Length = 401
Score = 39.9 bits (94), Expect = 0.006
Identities = 34/160 (21%), Positives = 57/160 (35%), Gaps = 32/160 (20%)
Query: 97 SGSQANQAVFFSVLNPGDTIMG-----MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151
S AN +F ++L D I+ S+ +G L Y N +
Sbjct: 113 SCFDANGGLFETLLGAEDAIISDALNHASIIDGVRLCKAKR----------YRYANNDMQ 162
Query: 152 KIDYKKVEYLAKKNKPKLIIA-------GASAYSQYIDFERFYHIAKNINSYFMVDMAHY 204
+++ + E + LI G A + + +A ++ MVD +H
Sbjct: 163 ELEARLKEAREAGARHVLIATDGVFSMDGVIA-----NLKGVCDLADKYDALVMVDDSHA 217
Query: 205 AGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFI 239
G + EY + + D IT T K+L G GG+
Sbjct: 218 VGFVGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYT 257
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 38.9 bits (90), Expect = 0.006
Identities = 8/35 (22%), Positives = 17/35 (48%)
Query: 410 KRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
+R + + G G GK+++ +A+ I+G
Sbjct: 15 RRFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIEG 49
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 39.1 bits (92), Expect = 0.009
Identities = 27/56 (48%), Positives = 35/56 (62%), Gaps = 8/56 (14%)
Query: 386 RPSNFNTLIGQNHISKSL---INALDKKR---LHHAYLFTGTRGVGKTTISRILAK 435
RPSNF+ IGQ I K+L I A KKR L H LF+G G+GKTT++ I++
Sbjct: 24 RPSNFDGYIGQESIKKNLNVFIAAA-KKRNECLDHI-LFSGPAGLGKTTLANIISY 77
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 38.5 bits (89), Expect = 0.015
Identities = 42/306 (13%), Positives = 85/306 (27%), Gaps = 56/306 (18%)
Query: 380 VLARKYRPSNFNTLIG----QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAK 435
L Y P L I+ L +++ ++ +++ G G GKT + + +
Sbjct: 12 YLLPDYIPDE---LPHREDQIRKIASILAPLYREEKPNNIFIY-GLTGTGKTAVVKFVLS 67
Query: 436 CL-------------NCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGIN 482
L N ID + + V V G++
Sbjct: 68 KLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKV----------------PFTGLS 111
Query: 483 EMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTL-----EEPPKYIKFILATT 537
+ V+DE+ + +L L E I FI T
Sbjct: 112 IAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSKISFIGITN 171
Query: 538 E---PQKIPITVLSRCI--QFNLKKMLHHDIVNNLCYILN--KENIKFETSALNLIA--- 587
+ + V S + ++ + L + + + L A
Sbjct: 172 DVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALA 231
Query: 588 TGAQGSMRDALSLTDQAI----NYSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNL 643
G R AL L + K+ + I++ + I+ L +
Sbjct: 232 AREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIERDRVRDIILTLPFHSKLV 291
Query: 644 ILSIAN 649
++++ +
Sbjct: 292 LMAVVS 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 37.2 bits (86), Expect = 0.016
Identities = 10/28 (35%), Positives = 14/28 (50%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDG 444
+ TG GKTT+S+ LA L +
Sbjct: 9 IVTGHPATGKTTLSQALATGLRLPLLSK 36
>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type
I, acyltransferase, PY phosphate; HET: PLP; 2.30A
{Sphingobacterium multivorum}
Length = 398
Score = 37.9 bits (89), Expect = 0.022
Identities = 67/335 (20%), Positives = 121/335 (36%), Gaps = 71/335 (21%)
Query: 34 ASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGCKFI--DLIEKIAINRLKKIFN 87
S +Y L +++A L KY G G R+ G I +L EK++
Sbjct: 49 GSNSYLGLTTDTRIIKAAQDAL-EKYGTGCAGSRFLNGTLDIHVELEEKLS-----AYVG 102
Query: 88 AEAANVQPHSGSQANQAVFFSVLNPGDTIMG-----MSLQEGGHLTHGMMLNMSGKWFNS 142
EAA + +G Q+N ++ D I+ S+ +G L+ ++
Sbjct: 103 KEAAILFS-TGFQSNLGPLSCLMGRNDYILLDERDHASIIDGSRLSFSKVIK-------- 153
Query: 143 ICYGLNKKEKIDYKKVEYLAKKNKP---KLIIAGASAYS---QYIDFERFYHIAKNINSY 196
YG N + + + + KLI +S ++ IA ++
Sbjct: 154 --YGHN-----NMEDLRAKLSRLPEDSAKLICTD-GIFSMEGDIVNLPELTSIANEFDAA 205
Query: 197 FMVDMAHYAGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIIN- 250
MVD AH G+I + D I T KSL GGF+ +I+
Sbjct: 206 VMVDDAHSLGVIGHKGAGTASHFGLNDDVDLIMGTFSKSL-ASLGGFVAGD---ADVIDF 261
Query: 251 ----------SAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300
SA +A+ A E+++ + + +++ KN L
Sbjct: 262 LKHNARSVMFSASMT-------PASVASTLKAL-EIIQNE-PEHIEKLWKNTDYAKAQLL 312
Query: 301 QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335
G + G T+S I+ + +R+ + T + + + +
Sbjct: 313 DHGFDL--GATESPILPIFIRSNEKTFWVTKMLQD 345
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 37.5 bits (88), Expect = 0.025
Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 8/56 (14%)
Query: 386 RPSNFNTLIGQNHISKSL---INALDKKR---LHHAYLFTGTRGVGKTTISRILAK 435
RP + + IGQ ++ K L + A K R L H L G G+GKTT++ I+A
Sbjct: 20 RPKSLDEFIGQENVKKKLSLALEAA-KMRGEVLDHV-LLAGPPGLGKTTLAHIIAS 73
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 36.1 bits (82), Expect = 0.026
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 10/31 (32%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDD----LIIK 836
KQA++ L+ L LY DD L IK
Sbjct: 19 KQALK-KLQASLKLY-----ADDSAPALAIK 43
Score = 33.8 bits (76), Expect = 0.15
Identities = 11/54 (20%), Positives = 16/54 (29%), Gaps = 30/54 (55%)
Query: 1272 EKNKINENLKLPHNLDYMKIQSLSIEARQKLNKYKPETIGQASRISGVTPA-AL 1324
EK + KL +A KL Y ++ PA A+
Sbjct: 18 EKQALK---KL--------------QASLKL--YADDS----------APALAI 42
Score = 31.8 bits (71), Expect = 0.75
Identities = 10/38 (26%), Positives = 17/38 (44%), Gaps = 9/38 (23%)
Query: 573 KENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE 610
K+ +K ++L L A + A +L AI + E
Sbjct: 19 KQALKKLQASLKLYADDS------APAL---AIKATME 47
Score = 30.7 bits (68), Expect = 1.7
Identities = 11/46 (23%), Positives = 15/46 (32%), Gaps = 20/46 (43%)
Query: 483 EMAQL--LEQTI--YAPINARYKIYVIDEVHMLTHHAFNAMLKTLE 524
E L L+ ++ YA D L A A T+E
Sbjct: 18 EKQALKKLQASLKLYAD----------DSAPAL---AIKA---TME 47
Score = 30.7 bits (68), Expect = 1.9
Identities = 9/26 (34%), Positives = 12/26 (46%), Gaps = 6/26 (23%)
Query: 151 EKIDYKKVE-----YLAKKNKPKLII 171
EK KK++ Y A + P L I
Sbjct: 18 EKQALKKLQASLKLY-ADDSAPALAI 42
Score = 30.3 bits (67), Expect = 2.1
Identities = 9/30 (30%), Positives = 17/30 (56%), Gaps = 6/30 (20%)
Query: 22 EKQ---RQNNNIELIASENYTSLAV---ME 45
EKQ + +++L A ++ +LA+ ME
Sbjct: 18 EKQALKKLQASLKLYADDSAPALAIKATME 47
Score = 28.8 bits (63), Expect = 7.4
Identities = 7/24 (29%), Positives = 14/24 (58%), Gaps = 6/24 (25%)
Query: 75 EKIAINRLK---KIFNAEAANVQP 95
EK A+ +L+ K++ ++A P
Sbjct: 18 EKQALKKLQASLKLYADDSA---P 38
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 37.2 bits (87), Expect = 0.027
Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 8/56 (14%)
Query: 386 RPSNFNTLIGQNHISKSL---INALDKKR---LHHAYLFTGTRGVGKTTISRILAK 435
RP + IGQ + + L + A K R L H L G G+GKTT++ ++A
Sbjct: 7 RPKTLDEYIGQERLKQKLRVYLEAA-KARKEPLEHL-LLFGPPGLGKTTLAHVIAH 60
>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein
structure initiative, NORT structural genomics
consortium, NESG; 2.50A {Staphylococcus aureus subsp}
SCOP: c.108.1.13
Length = 384
Score = 37.1 bits (85), Expect = 0.033
Identities = 44/243 (18%), Positives = 93/243 (38%), Gaps = 21/243 (8%)
Query: 547 LSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAIN 606
LS F++ + ++++ + CY+ +I +ET N I +R+ + D+ +N
Sbjct: 13 LSEERCFDVSALTVYELLMDKCYLGLHSHIDWETLTDNDIQ-----DIRNRIFQKDKILN 67
Query: 607 YSSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLS 666
LNS +ML I+ +LI IL L+ + + +E+ + S L D
Sbjct: 68 KLKSL-GLNSNWDMLFIVFSIHLIDILKKLSHDEIEAFMYQDEPVELKLQNISTNLADCF 126
Query: 667 LLLHQISLIQISPEILIKDSPNYNEIIQLS-KKFNIEQIQLFYQISIHGRNELELAPDEY 725
L Q+ L + + + + Y + + + + ++ LF E+ + Y
Sbjct: 127 NLNEQLPLQFLD-NVKVGKNNIYAALEEFATTELHVSDATLFSLKGALWTLAQEVYQEWY 185
Query: 726 AGFTMTLLRMLVFQTLHNHLDYNNLKNSKDTKGNL------IHAVLTVLDAMGGIMAIAT 779
G + ++ + + K + + + +L L G + IAT
Sbjct: 186 LGSKL-------YEDVEKKIARTTFKTGYIYQEIILRPVDEVKVLLNDLKGAGFELGIAT 238
Query: 780 DKS 782
+
Sbjct: 239 GRP 241
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 37.1 bits (86), Expect = 0.035
Identities = 32/138 (23%), Positives = 58/138 (42%), Gaps = 22/138 (15%)
Query: 83 KKIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTIMGMSLQEGGHL------THGMMLN 134
++FN E+A V+PH +G+ A A F L PG+T++ + + L T +
Sbjct: 83 ARVFNTESALVRPHFVNGTHALGAALFGNLRPGNTMLSVCGEPYDTLHDVIGITENSNMG 142
Query: 135 MSGKWFNSICYG---LNKKEKIDYKKVEYLAKKN-KPKLI-IAGASAYSQY-----IDFE 184
++ I Y L + K + +++E + K++ L+ I ++ Y D +
Sbjct: 143 SLKEF--GINYKQVDLKEDGKPNLEEIEKVLKEDESITLVHIQRSTGYGWRRALLIEDIK 200
Query: 185 RFYHIAKNINS--YFMVD 200
KNI VD
Sbjct: 201 SIVDCVKNIRKDIICFVD 218
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 37.3 bits (86), Expect = 0.036
Identities = 29/174 (16%), Positives = 52/174 (29%), Gaps = 27/174 (15%)
Query: 156 KKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN 215
K + +AKK +++ A E Y I + Y +
Sbjct: 207 KAMYSIAKKYDIPVVMDSARF------AENAYFIKQREAEYKDWTIEQITRETYK----- 255
Query: 216 PVPFADFITSTTHKSLRGPRGGFILMKK--------KYKKIINSAVFPGIQGGPLMHVIA 267
+AD + + K P GG + MK + + + GG +
Sbjct: 256 ---YADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAME 312
Query: 268 AKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLR 321
AV + + D + + + L L++ G+ G H VD
Sbjct: 313 RLAVGLYDGMNLD---WLAYRIAQVQYLVDGLEEIGVVCQQAGG--HAAFVDAG 361
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop,
rossman fold, AAA+, photosynthesis, metal transport;
2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB:
2x31_G
Length = 350
Score = 36.7 bits (85), Expect = 0.044
Identities = 32/157 (20%), Positives = 57/157 (36%), Gaps = 30/157 (19%)
Query: 390 FNTLIGQNHISKSL-INALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGI 448
F+ ++GQ + +L + A+D + L G RG GK+T R LA L I +
Sbjct: 23 FSAIVGQEDMKLALLLTAVDP-GIGGV-LVFGDRGTGKSTAVRALAALLPEIEAVEGCPV 80
Query: 449 TSQPCGKCSVCVKIDN---------------GCFMDY----IEMDAASTRGINEMAQ-LL 488
+S + + G D ++++ A ++G LL
Sbjct: 81 SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLL 140
Query: 489 EQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEE 525
+ A IDE ++L H + +L +
Sbjct: 141 AR-------ANRGYLYIDECNLLEDHIVDLLLDVAQS 170
>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance;
putative cystathionine beta-lyase involved in aluminum
resis structural genomics; HET: LLP; 1.91A {Listeria
monocytogenes str} PDB: 3fd0_A*
Length = 409
Score = 36.7 bits (85), Expect = 0.046
Identities = 31/136 (22%), Positives = 50/136 (36%), Gaps = 21/136 (15%)
Query: 83 KKIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTIMGMS------LQE--GGHLTHGMM 132
+F EAA V+P SG+ A V F +L P D ++ ++ L+E G
Sbjct: 69 ATVFKTEAALVRPQIISGTHAISTVLFGILRPDDELLYITGQPYDTLEEIVGIRKQGQGS 128
Query: 133 LNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY------IDFERF 186
L ++S+ L + +D+ ++ K K+I S +
Sbjct: 129 LKDFHIGYSSV--PLLENGDVDFPRIAK-KMTPKTKMIGIQRSRGYADRPSFTIEKIKEM 185
Query: 187 YHIAKNINS--YFMVD 200
KNIN VD
Sbjct: 186 IVFVKNINPEVIVFVD 201
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 35.8 bits (82), Expect = 0.053
Identities = 8/31 (25%), Positives = 12/31 (38%)
Query: 414 HAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
+ G G GKTTI+ +A +
Sbjct: 30 RHVVVMGVSGSGKTTIAHGVADETGLEFAEA 60
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA
replication initation factor, cell cycle control factor;
HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11
c.37.1.20
Length = 389
Score = 36.7 bits (84), Expect = 0.055
Identities = 42/309 (13%), Positives = 80/309 (25%), Gaps = 39/309 (12%)
Query: 380 VLARKYRPSNFNTLIG----QNHISKSLINALDKK--RLHHAYLFTGTRGVGKTTISRIL 433
V + Y P L + L N L A L G G GKT R L
Sbjct: 9 VFSPSYVPKR---LPHREQQLQQLDILLGNWLRNPGHHYPRATL-LGRPGTGKTVTLRKL 64
Query: 434 AKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIY 493
+ I +E LL + +
Sbjct: 65 WELYKD---KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLR 121
Query: 494 APINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKY----IKFILATTEPQ---KIPITV 546
Y V+D+ L + ++ +E K I ++ + +
Sbjct: 122 E--RDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPST 179
Query: 547 LSRCI--QFNLKKMLHHDIVNNLCYILNKENIK--FETSALNLIA---------TGAQGS 593
I + L + + L +IA +G
Sbjct: 180 RGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGD 239
Query: 594 MRDALSLTDQAINY----SSEKITLNSMQEMLSIIDQKYLIQILDALAEQDGNLILSIAN 649
R A+ + ++ + I +++ + ++L L + +L+I
Sbjct: 240 ARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEVLFGISEEVLIGLPLHEKLFLLAIVR 299
Query: 650 KIEIYNLSY 658
++I + Y
Sbjct: 300 SLKISHTPY 308
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein,
calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides}
PDB: 3syk_A 3zuh_A*
Length = 309
Score = 35.9 bits (82), Expect = 0.068
Identities = 29/180 (16%), Positives = 55/180 (30%), Gaps = 42/180 (23%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
FTG G GKTT++ +A L+ +G G + +
Sbjct: 71 SFTGNPGTGKTTVALKMAGLLHRLGYVRKG----------------------HLVSVTRD 108
Query: 477 S--TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH---------AFNAMLKTLEE 525
+ I A ++ + A + IDE + L A +L+ +E
Sbjct: 109 DLVGQYIGHTAPKTKEVLKR---AMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMEN 165
Query: 526 PPKYIKFILATTEPQ-----KIPITVLSR-CIQFNLKKMLHHDIVNNLCYILNKENIKFE 579
+ ILA + + SR ++ ++L+ +N +
Sbjct: 166 NRDDLVVILAGYADRMENFFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMT 225
>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine
decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP;
2.11A {Methanocaldococcus jannaschii}
Length = 397
Score = 36.2 bits (84), Expect = 0.080
Identities = 40/180 (22%), Positives = 58/180 (32%), Gaps = 25/180 (13%)
Query: 152 KIDYKKVEYLAKKNKPKLI--IAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIA 209
ID K V+ + I IAG + + E IAK N Y VD A + GL+
Sbjct: 157 TIDEKFVKDAVEDYDVDGIIGIAGTTELGTIDNIEELSKIAKENNIYIHVDAA-FGGLVI 215
Query: 210 -----AGEYPNPVPFADF------ITSTTHKSLRGPRG-GFILMK-KKYKKII------- 249
+ DF IT HK P G IL K YK+ +
Sbjct: 216 PFLDDKYKKKGVNYKFDFSLGVDSITIDPHKMGHCPIPSGGILFKDIGYKRYLDVDAPYL 275
Query: 250 NSAVFPGIQGG-PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVS 308
I G A + + + + + ++N L K L + + V
Sbjct: 276 TETRQATILGTRVGFGGACTYA-VLRYLGREGQRKIVNECMENTLYLYKKLKENNFKPVI 334
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta
protein., structural genomics, PSI-2, protein structure
initiative; HET: G3D; 2.20A {Bacillus subtilis} PDB:
2axp_A*
Length = 173
Score = 34.7 bits (80), Expect = 0.086
Identities = 8/29 (27%), Positives = 13/29 (44%)
Query: 416 YLFTGTRGVGKTTISRILAKCLNCIGIDG 444
+ G K+T++ L+K L I G
Sbjct: 4 IILEGPDCCFKSTVAAKLSKELKYPIIKG 32
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 35.6 bits (82), Expect = 0.11
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 827 QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861
Q V LI + N + G VT G + ++ L G
Sbjct: 184 QGRVVTLIFENNDVKGAVTADGKIWRAERTFLCAG 218
>3ht4_A Aluminum resistance protein; lyase, putative cystathionine
BEAT-lyase, aluminium resistance protein, Q81A77_baccr,
NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}
Length = 431
Score = 35.5 bits (82), Expect = 0.12
Identities = 14/36 (38%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 83 KKIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTI 116
+F AEA V+P SG+ A F +L PGD +
Sbjct: 75 ADVFGAEAGLVRPQIISGTHAISTALFGILRPGDEL 110
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 34.6 bits (79), Expect = 0.12
Identities = 13/27 (48%), Positives = 16/27 (59%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID 443
L TGT GVGKTT+ + LA I+
Sbjct: 15 LLTGTPGVGKTTLGKELASKSGLKYIN 41
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 34.5 bits (79), Expect = 0.12
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 416 YLFTGTRGVGKTTISRILAKCLN 438
Y+ TG GVGK+T + LA L+
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLD 27
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 34.3 bits (78), Expect = 0.13
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 416 YLFTGTRGVGKTTISRILAKCLN 438
L +G G GK+TI+ LA
Sbjct: 12 LLLSGHPGSGKSTIAEALANLPG 34
>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog;
NP_348457.1, putative cystathionine beta-lyase involved
in A resistance; HET: LLP MSE; 2.00A {Clostridium
acetobutylicum}
Length = 427
Score = 35.2 bits (81), Expect = 0.14
Identities = 16/36 (44%), Positives = 21/36 (58%), Gaps = 2/36 (5%)
Query: 83 KKIFNAEAANVQPH--SGSQANQAVFFSVLNPGDTI 116
IFN E+A V+PH +G+ A A F L P DT+
Sbjct: 84 ANIFNTESAFVRPHFVNGTHAIGAALFGNLRPNDTM 119
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; 3.01A {Schizosaccharomyces pombe}
Length = 329
Score = 35.1 bits (81), Expect = 0.15
Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Query: 402 SLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
+L N L++ L G GVGKTT S LA +
Sbjct: 9 TLENLLEQTSLKW-IFVGGKGGVGKTTTSCSLAIQM 43
>1svv_A Threonine aldolase; structural genomics, structural genomics of
pathogenic proto SGPP, protein structure initiative,
PSI; 2.10A {Leishmania major} SCOP: c.67.1.1
Length = 359
Score = 34.9 bits (81), Expect = 0.17
Identities = 8/40 (20%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
Query: 78 AINRLKKIFNAEAANVQP-HSGSQANQAVFFSVLNPGDTI 116
A + ++ A+V G+Q N L P + +
Sbjct: 54 AARLIGELLERPDADVHFISGGTQTNLIACSLALRPWEAV 93
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding
mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli}
SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Length = 758
Score = 34.9 bits (81), Expect = 0.19
Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 8/52 (15%)
Query: 394 IGQNHISKSLINAL--------DKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
GQ+ ++L A+ + + ++LF G GVGKT ++ L+K L
Sbjct: 461 FGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL 512
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 33.7 bits (78), Expect = 0.20
Identities = 11/26 (42%), Positives = 14/26 (53%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGID 443
G RG G TT+ R LA+ L +D
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFVD 32
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding,
protein transport; HET: ANP; 3.00A {Chaetomium
thermophilum} PDB: 3iqx_A* 3ibg_A*
Length = 334
Score = 34.5 bits (79), Expect = 0.22
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 1/36 (2%)
Query: 402 SLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
+L + LD++ L G GVGKTT S LA L
Sbjct: 6 TLQSILDQRSLRW-IFVGGKGGVGKTTTSCSLAIQL 40
>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase,
structural genomics; HET: PLP; 2.40A {Archaeoglobus
fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*
Length = 371
Score = 34.7 bits (80), Expect = 0.22
Identities = 39/246 (15%), Positives = 82/246 (33%), Gaps = 39/246 (15%)
Query: 19 ILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDL----I 74
+ K + + NI+ + + + +A ++ +GY + + ++ I
Sbjct: 1 MFKRETKDFINIDPLQTGGKLTEEARQAL-----LEWGDGYSVCDFCTTGRLDEIKTPPI 55
Query: 75 EKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMML- 133
N+L K + A + +A AV S+ ++ M H + +
Sbjct: 56 HDFIHNQLPKFLGCDVA-RVTNGAREAKFAVMHSLAKKDAWVV-MDENC--H--YSSYVA 109
Query: 134 -NMSG---KWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQY---IDFERF 186
+G Y ++ + KK ++ Y D ++
Sbjct: 110 AERAGLNIALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKI 169
Query: 187 YHIAKNINSYFMVDMAHYAG-----LIAAGEYPNPVPFADFITSTTHKSLRGPRG--GFI 239
+ + +V+ A+ G L G ADFI + HKS+ G G +
Sbjct: 170 AKVCSEYDVPLLVNGAYAIGRMPVSLKEIG--------ADFIVGSGHKSM-AASGPIGVM 220
Query: 240 LMKKKY 245
MK+++
Sbjct: 221 GMKEEW 226
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 33.6 bits (76), Expect = 0.24
Identities = 10/26 (38%), Positives = 16/26 (61%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGI 442
L TGT G GKT+++ ++A L+
Sbjct: 14 LITGTPGTGKTSMAEMIAAELDGFQH 39
>3ab1_A Ferredoxin--NADP reductase; oxidoreductase, electron transport,
FAD, flavoprotein; HET: FAD; 2.39A {Chlorobaculum
tepidum}
Length = 360
Score = 34.2 bits (79), Expect = 0.27
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 5/54 (9%)
Query: 808 LYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861
L+ QA R+ + LN E V + T G + S+ V++ G
Sbjct: 80 LWAQAERYNPDVVLN-----ETVTKYTKLDDGTFETRTNTGNVYRSRAVLIAAG 128
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid
biosynthesis, P-loop kinase, metal- binding, shikimate
pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis}
SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A*
2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A*
1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A*
3baf_A*
Length = 184
Score = 33.0 bits (76), Expect = 0.33
Identities = 11/22 (50%), Positives = 12/22 (54%)
Query: 418 FTGTRGVGKTTISRILAKCLNC 439
G G GK+TI R LAK L
Sbjct: 7 LVGLPGSGKSTIGRRLAKALGV 28
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A
{Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A
3n2e_A*
Length = 168
Score = 32.9 bits (76), Expect = 0.37
Identities = 7/26 (26%), Positives = 13/26 (50%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGID 443
G G GK+++++ L L +D
Sbjct: 12 LIGFMGSGKSSLAQELGLALKLEVLD 37
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 33.0 bits (75), Expect = 0.38
Identities = 8/19 (42%), Positives = 10/19 (52%)
Query: 419 TGTRGVGKTTISRILAKCL 437
G GVGKT + L + L
Sbjct: 11 NGPFGVGKTHTAHTLHERL 29
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292;
mixed alpha-beta protein, rossman fold, signaling
protein, transferase; 1.40A {Aquifex aeolicus} SCOP:
c.37.1.11
Length = 178
Score = 32.7 bits (74), Expect = 0.41
Identities = 24/146 (16%), Positives = 47/146 (32%), Gaps = 39/146 (26%)
Query: 417 LFTGTRGVGKTTISRILAKCLN-----------------------CIGIDGNGGITSQPC 453
+ TG GVGKTT+ + + + L I +G I S
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEV---HM 510
V ++ + +LE+ R K+ +IDE+ +
Sbjct: 64 FTSKKLV---GSYGVNVQYFE-------ELAIPILERAYREAKKDRRKVIIIDEIGKMEL 113
Query: 511 LTHHAFNAMLKTLEEPPKYIKFILAT 536
+ + + + + +P ++AT
Sbjct: 114 FSKKFRDLVRQIMHDPN---VNVVAT 136
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein,
targeting factor, ATP-bindi TRC40, ARSA,
nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus
jannaschii} PDB: 3ug6_A*
Length = 349
Score = 33.4 bits (76), Expect = 0.43
Identities = 13/39 (33%), Positives = 17/39 (43%)
Query: 399 ISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
+ L+KK +F G GVGKTT+S L
Sbjct: 12 LRGITEKKLEKKDGTKYIMFGGKGGVGKTTMSAATGVYL 50
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A
{Debaryomyces hansenii}
Length = 348
Score = 33.7 bits (77), Expect = 0.43
Identities = 12/36 (33%), Positives = 16/36 (44%), Gaps = 1/36 (2%)
Query: 402 SLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
+L + + L G GVGKTT S +A L
Sbjct: 8 TLESIVQHDSLKW-IFVGGKGGVGKTTTSSSVAVQL 42
>2e5v_A L-aspartate oxidase; archaea, oxidoreductase; HET: FAD; 2.09A
{Sulfolobus tokodaii}
Length = 472
Score = 33.7 bits (78), Expect = 0.45
Identities = 12/64 (18%), Positives = 27/64 (42%), Gaps = 7/64 (10%)
Query: 799 ATRAQVDRILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGV-VTKIGIKFFSKTVI 857
T ++ L K A + + + ++ + ++ +K K+ G K G+ ++
Sbjct: 116 ETGREIFNFLLKLA------REEGIPIIEDRLVEIRVKDGKVTGFVTEKRGLVEDVDKLV 169
Query: 858 LTTG 861
L TG
Sbjct: 170 LATG 173
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND
ligase, magnesium, nucleotide-binding; 1.85A
{Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A*
3fpa_A*
Length = 251
Score = 33.2 bits (76), Expect = 0.45
Identities = 13/25 (52%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGID 443
TGT GVGKT + LA GID
Sbjct: 34 TGT-GVGKTVVCAALASAARQAGID 57
>2zbw_A Thioredoxin reductase; redox protein, oxidoreductase, structural
genomics, NPPSFA, project on protein structural and
functional analyses; HET: FAD; 2.10A {Thermus
thermophilus}
Length = 335
Score = 33.3 bits (77), Expect = 0.45
Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 6/54 (11%)
Query: 808 LYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861
L +Q F L E + + + + V T G + +K VI+ G
Sbjct: 71 LVEQVAPFNPVYSLG-----ERAET-LEREGDLFKVTTSQGNAYTAKAVIIAAG 118
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A
{Coxiella burnetii}
Length = 185
Score = 32.6 bits (75), Expect = 0.47
Identities = 8/21 (38%), Positives = 10/21 (47%)
Query: 418 FTGTRGVGKTTISRILAKCLN 438
G G GKT++ LAK
Sbjct: 10 LIGLMGAGKTSVGSQLAKLTK 30
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG, structural
genomics, PSI-2, prote structure initiative; HET: FAD;
2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 33.5 bits (76), Expect = 0.49
Identities = 18/101 (17%), Positives = 33/101 (32%), Gaps = 12/101 (11%)
Query: 1006 EGIVINEYYPNGISTSLPFEAQIELVQSI-DGMKNANIIRPG--------YAIEYDYFNP 1056
G V + P T L V++I + + + G +E +P
Sbjct: 435 LGDVEPSFTPGIKLTDLSKALPPFAVEAIREAIPAFDRKIKGFASEDGLLTGVETRTSSP 494
Query: 1057 CNLK--SSLETKQIHGLFFAGQINGTT-GYEEAASQGLLAG 1094
+K ++ + G + AG+ G G A G+
Sbjct: 495 VCIKRGKDFQSVNLKGFYPAGEGAGYAGGILSAGIDGIKVA 535
Score = 33.5 bits (76), Expect = 0.61
Identities = 14/51 (27%), Positives = 23/51 (45%)
Query: 811 QAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861
+ +R + F VDDL ++ +I GV G + S+ V+L G
Sbjct: 224 EKMRATIIELGGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAVG 274
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A
{Campylobacter jejuni} SCOP: c.37.1.2
Length = 175
Score = 32.5 bits (75), Expect = 0.52
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGID 443
F G G GK+T++R LAK L+ + +D
Sbjct: 9 FIGFMGSGKSTLARALAKDLDLVFLD 34
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor,
endoplasmic reticulum, TRC40, ATP-binding, golgi
apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae}
PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A*
3idq_A 3a36_A 3a37_A*
Length = 354
Score = 33.3 bits (76), Expect = 0.54
Identities = 10/36 (27%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 402 SLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
+L + + G GVGKTT S +A +
Sbjct: 8 NLHSLITSTTHKW-IFVGGKGGVGKTTSSCSIAIQM 42
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI,
protein structure initiative; 2.05A {Escherichia coli}
SCOP: c.37.1.2
Length = 173
Score = 32.1 bits (74), Expect = 0.59
Identities = 11/22 (50%), Positives = 13/22 (59%)
Query: 418 FTGTRGVGKTTISRILAKCLNC 439
G G GK+TI R LA+ LN
Sbjct: 9 LVGPMGAGKSTIGRQLAQQLNM 30
>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA
synthase, biotin biosynthesis, 8-AMIN oxonanoate
synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB:
2g6w_A* 1dje_A* 1dj9_A*
Length = 384
Score = 32.9 bits (76), Expect = 0.67
Identities = 42/269 (15%), Positives = 81/269 (30%), Gaps = 65/269 (24%)
Query: 97 SGSQANQAVFFSVLNPGDTIMG-----MSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151
SG ANQAV +++ D I SL E L+ + + N
Sbjct: 107 SGFAANQAVIAAMMAKEDRIAADRLSHASLLEAASLSPSQLRR----------FAHN--- 153
Query: 152 KIDYKKVEYLAKKNKP--KLIIA-------GASAYSQYIDFERFYHIAKNINSYFMVDMA 202
D + L P ++++ G SA + + N + MVD A
Sbjct: 154 --DVTHLARLLASPCPGQQMVVTEGVFSMDGDSA-----PLAEIQQVTQQHNGWLMVDDA 206
Query: 203 HYAGLIAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFILMKKK---YKKIINSA-- 252
H G+I P + + T K G G +L Y ++ A
Sbjct: 207 HGTGVIGEQGRGSCWLQKVKP--ELLVVTFGKGF-GVSGAAVLCSSTVADY--LLQFARH 261
Query: 253 -VF-----PGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRI 306
++ P A + + + ++++ + +
Sbjct: 262 LIYSTSMPPA--------QAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLPFTL 313
Query: 307 VSGGTKSHIILVDLRNKKITGKIAESILE 335
+ S I + + + ++AE + +
Sbjct: 314 --ADSCSAIQPLIVGDNSRALQLAEKLRQ 340
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase;
0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A*
1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A*
1dak_A* 1dam_A* 1dbs_A 1dts_A
Length = 224
Score = 32.4 bits (74), Expect = 0.73
Identities = 9/25 (36%), Positives = 10/25 (40%), Gaps = 1/25 (4%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGID 443
T T VGKT S L + G
Sbjct: 9 TDT-EVGKTVASCALLQAAKAAGYR 32
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND
biology, protein structure initiative, midwest center
for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter
pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A*
3qy0_A* 2qmo_A
Length = 242
Score = 32.5 bits (74), Expect = 0.75
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGID 443
T T GKTT +R+LA+ N G+
Sbjct: 29 TNT-NAGKTTCARLLAQYCNACGVK 52
>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas
putida} SCOP: c.67.1.1
Length = 356
Score = 32.6 bits (75), Expect = 0.81
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 78 AINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTI 116
+ +IF + +G+ AN ++ P I
Sbjct: 48 VKRKFCEIFERDVEVFLVPTGTAANALCLSAMTPPWGNI 86
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane
protein; HET: ADP; 2.11A {Methanothermobacter
thermautotrophicusorganism_taxid}
Length = 324
Score = 32.5 bits (74), Expect = 0.83
Identities = 13/38 (34%), Positives = 14/38 (36%), Gaps = 2/38 (5%)
Query: 400 SKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
K L K G GVGKTTIS A +
Sbjct: 3 FKDLFKFNKGKT--TFVFIGGKGGVGKTTISAATALWM 38
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat
ATP binding, chloroplast, transferase; 2.35A
{Arabidopsis thaliana}
Length = 250
Score = 32.0 bits (73), Expect = 0.92
Identities = 12/48 (25%), Positives = 19/48 (39%)
Query: 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
+ I K + + G G GKTT+ +I+A+ L D
Sbjct: 31 EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLGYTFFD 78
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop
kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex
aeolicus}
Length = 168
Score = 31.7 bits (73), Expect = 0.93
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 418 FTGTRGVGKTTISRILAKCLN 438
G GK+T+ +L++ LN
Sbjct: 5 LIGFMCSGKSTVGSLLSRSLN 25
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural
genomics of infec diseases, csgid, ligase; 1.52A
{Francisella tularensis subsp}
Length = 228
Score = 32.0 bits (73), Expect = 1.1
Identities = 10/25 (40%), Positives = 11/25 (44%), Gaps = 1/25 (4%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGID 443
T T VGKT IS L + I
Sbjct: 12 TDT-EVGKTYISTKLIEVCEHQNIK 35
>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6,
pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A
{Pseudomonas fluorescens} SCOP: c.67.1.3
Length = 416
Score = 32.4 bits (74), Expect = 1.2
Identities = 37/252 (14%), Positives = 82/252 (32%), Gaps = 56/252 (22%)
Query: 178 SQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRG- 236
D + ++ + + D+AH AG + + D+ T+K L G G
Sbjct: 179 GYMHDMQALTALSHECGALAIWDLAHSAGAVPVDLHQAGA---DYAIGCTYKYLNGGPGS 235
Query: 237 -GFILMKKKYKKIINSAVF------------------PGIQ----GGPLMHVIAAKAVAF 273
F+ + + ++ + GI G + +A
Sbjct: 236 QAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPITSLAMVECGL 295
Query: 274 KEVLKPDFKIYQKQVVKNAKILSKILDQR----GIRIVSGGTK----SHIILVDLRNKKI 325
+ D +++ + + ++++QR + +V+ SH+ +
Sbjct: 296 DVFAQTDMASLRRKSLALTDLFIELVEQRCAAHELTLVTPREHAKRGSHVSFEHPEGYAV 355
Query: 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSE----LEIIKVVL 381
L +I D +P +R G + + T F+E ++I+ +L
Sbjct: 356 I-----QALIDRGVIG-------DYREP---RIMRFGFTPLYTT-FTEVWDAVQILGEIL 399
Query: 382 ARK-YRPSNFNT 392
RK + + F
Sbjct: 400 DRKTWAQAQFQV 411
>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent
aminotransferase fold; HET: PLP; 2.20A {Salmonella
typhimurium} SCOP: c.67.1.3
Length = 366
Score = 32.2 bits (74), Expect = 1.4
Identities = 33/204 (16%), Positives = 73/204 (35%), Gaps = 58/204 (28%)
Query: 70 FIDLIEKIAINRLKKIF---NAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGH 126
I ++E+I +L + + + SGS A +AV S L P D +
Sbjct: 35 NIGVVEQI-RQQLTALATASEGYTSVLLQGSGSYAVEAVLGSALGPQDKV---------- 83
Query: 127 LTHGMMLNMSGKW---FNSIC--YGLNKK-------EKIDYKKVE-YLAKKNKPKLIIA- 172
++++ +G + + G+ + D + ++ L I
Sbjct: 84 ----LIVS-NGAYGARMVEMAGLMGIAHHAYDCGEVARPDVQAIDAILNADPTISHIAMV 138
Query: 173 ------GASAYSQYIDFERFYHIAKNINSYFMVD-MAHYAGLIAAGEYPNPVPFA----D 221
G + +A ++VD M+ + G+ P+ A D
Sbjct: 139 HSETTTGMLN-----PIDEVGALAHRYGKTYIVDAMSSFGGI--------PMDIAALHID 185
Query: 222 FITSTTHKSLRGPRG-GFILMKKK 244
++ S+ +K ++G G F++ +++
Sbjct: 186 YLISSANKCIQGVPGFAFVIAREQ 209
>3gyx_A Adenylylsulfate reductase; oxidoreductase; HET: FAD; 3.20A
{Desulfovibrio gigas}
Length = 662
Score = 32.3 bits (73), Expect = 1.4
Identities = 14/86 (16%), Positives = 31/86 (36%), Gaps = 24/86 (27%)
Query: 794 GAAVRATRAQVDR-------ILYKQAIRFYLENQLNLYLFQEEV--DDLIIKTN---KIL 841
VR+ R Q+ I+ + A +++ E + L++ N +I
Sbjct: 151 DKPVRSGRWQIMINGESYKVIVAEAAKNALGQDR-----IIERIFIVKLLLDKNTPNRIA 205
Query: 842 GVVTKIGIK------FFSKTVILTTG 861
G V ++ F + +++ G
Sbjct: 206 GAVG-FNLRANEVHIFKANAMVVACG 230
>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine,
sepsecs, protein-RNA complex, alternative splicing,
cytoplasm, protein biosynthesis, pyridoxal phosphate,
selenium; HET: PLR SEP; 2.81A {Homo sapiens}
Length = 501
Score = 32.0 bits (72), Expect = 1.5
Identities = 26/127 (20%), Positives = 42/127 (33%), Gaps = 12/127 (9%)
Query: 152 KIDYKKVEYLAKKNKPKLIIAGASAYSQYI-----DFERFYHIAKNINSYFMVDMAHYAG 206
+ D K VE ++ P I+ S S + E I N + +V+ A+
Sbjct: 199 RTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQ 258
Query: 207 LIAAGEYPNP---VPFADFITSTTHKSLRGPRGGFILMKKKYKKIIN--SAVFPGIQGG- 260
V D + K+ P GG I+ I S ++PG
Sbjct: 259 SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFN-DSFIQEISKMYPGRASAS 317
Query: 261 PLMHVIA 267
P + V+
Sbjct: 318 PSLDVLI 324
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD,
CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A*
1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Length = 806
Score = 32.1 bits (73), Expect = 1.6
Identities = 11/30 (36%), Positives = 14/30 (46%), Gaps = 2/30 (6%)
Query: 417 LFTGTRGVGKTTISRILAKCLNC--IGIDG 444
L G G GKT I+R +A I+G
Sbjct: 242 LLYGPPGTGKTLIARAVANETGAFFFLING 271
>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway,
transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP:
c.67.1.3 PDB: 2ch2_A*
Length = 396
Score = 31.9 bits (73), Expect = 1.6
Identities = 14/105 (13%), Positives = 34/105 (32%), Gaps = 10/105 (9%)
Query: 70 FIDLIEKIAINRLKKIFNAEAANV--QPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
++++ + L+ IF E S +A+ ++L GD ++ + G
Sbjct: 49 LFRTMDEV-KDGLRYIFQTENRATMCVSGSAHAGMEAMLSNLLEEGDRVL---IAVNGIW 104
Query: 128 THGM--MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI 170
M G + + + + ++PK +
Sbjct: 105 AERAVEMSERYG--ADVRTIEGPPDRPFSLETLARAIELHQPKCL 147
>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP,
pyridoxal phosphate, HOMO- oligomerization, unknown
function; 1.70A {Methanocaldococcus jannaschii} SCOP:
c.67.1.8 PDB: 2aev_A*
Length = 374
Score = 31.7 bits (72), Expect = 1.6
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 1/66 (1%)
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF-ADFITSTTHKSLRGPRGGFI 239
+F++ + AKN + VD A A + P + AD + ++T K + GPRGG +
Sbjct: 159 ENFKKVINTAKNKEAIVFVDDASGARVRLLFNQPPALKLGADLVVTSTDKLMEGPRGGLL 218
Query: 240 LMKKKY 245
KK+
Sbjct: 219 AGKKEL 224
>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for
structural genomics, JCSG; HET: MSE LLP; 1.70A
{Eubacterium rectale}
Length = 376
Score = 31.8 bits (73), Expect = 1.6
Identities = 6/50 (12%), Positives = 16/50 (32%), Gaps = 4/50 (8%)
Query: 70 FIDLIEKIAINRLKKIFNAEAAN---VQPHSGSQANQAVFFSVLNPGDTI 116
F + + + + A + S + + +AV + D +
Sbjct: 50 FSSTMLEN-EKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNCFTKKDKV 98
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase,
ATP binding site, hydro; HET: ADP; 2.15A {Escherichia
coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A*
1ii9_A*
Length = 589
Score = 31.8 bits (72), Expect = 1.7
Identities = 12/30 (40%), Positives = 14/30 (46%), Gaps = 3/30 (10%)
Query: 408 DKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
+ FTG GVGKT+IS A L
Sbjct: 6 NIPPYL---FFTGKGGVGKTSISCATAIRL 32
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding,
nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A
{Thermococcus onnurineus}
Length = 604
Score = 32.0 bits (73), Expect = 1.7
Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 3/50 (6%)
Query: 386 RPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAK 435
+ +IGQ H + + A ++KR H L G G GK+ + + +A+
Sbjct: 36 PEKLIDQVIGQEHAVEVIKTAANQKR--HVLL-IGEPGTGKSMLGQAMAE 82
>3igf_A ALL4481 protein; two-domained protein consisting of the N-terminal
alpha-beta the C-terminal all beta domain., structural
genomics; 2.00A {Nostoc SP}
Length = 374
Score = 31.8 bits (72), Expect = 1.8
Identities = 9/21 (42%), Positives = 11/21 (52%)
Query: 417 LFTGTRGVGKTTISRILAKCL 437
F G GV +T I+ AK L
Sbjct: 6 TFLGKSGVARTKIAIAAAKLL 26
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural
genomics of infec diseases, csgid, metal binding,
transferase; 1.70A {Bacteroides thetaiotaomicron}
Length = 199
Score = 31.1 bits (71), Expect = 2.0
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGID 443
TG G GKTT+ + A+ LN ID
Sbjct: 30 LTGYMGAGKTTLGKAFARKLNVPFID 55
>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase;
PLP, structural genomics, NPPSFA; HET: PLP; 1.90A
{Pyrococcus horikoshii}
Length = 386
Score = 31.4 bits (72), Expect = 2.1
Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 3/49 (6%)
Query: 70 FIDLIEKIAINRLKKIFNAEAANV--QPHSGSQANQAVFFSVLNPGDTI 116
+ + + RL++ E V P SG+ +A + ++ G +
Sbjct: 51 YRKVHMDT-VERLREFLEVEKGEVLLVPSSGTGIMEASIRNGVSKGGKV 98
>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine
biosynthesis, seven-stranded BETE-strand, PYR
5'-phosphate; HET: PLP; 2.50A {Methanococcus
maripaludis} SCOP: c.67.1.9
Length = 456
Score = 31.6 bits (71), Expect = 2.3
Identities = 19/132 (14%), Positives = 46/132 (34%), Gaps = 12/132 (9%)
Query: 143 ICYGLNKKEKIDYKKVE-YLAKKNKPKLIIAGASAYSQY----ID-FERFYHIAKNINSY 196
+ + + +E + K+ + S + + D I +N +
Sbjct: 204 ETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDDIVEIAKICENYDIP 263
Query: 197 FMVDMAHYAGLIAAGEYPNPVPF---ADFITSTTHKSLRGPRGGFILM--KKKYKKIINS 251
+++ A+ E F D + S++ K+L P GG ++ ++ K I+
Sbjct: 264 HIINGAYAIQNNYYLEKLKK-AFKYRVDAVVSSSDKNLLTPIGGGLVYSTDAEFIKEISL 322
Query: 252 AVFPGIQGGPLM 263
+ P++
Sbjct: 323 SYPGRASATPVV 334
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 30.8 bits (69), Expect = 2.3
Identities = 24/133 (18%), Positives = 42/133 (31%), Gaps = 18/133 (13%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
+ TG GVG TT S++ L G++ G V + D +M
Sbjct: 7 VVTGVPGVGSTTSSQLAMDNLRKEGVN----YKMVSFGSVMFEVAKEENLVSDRDQMRKM 62
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYI------ 530
+ ++ + I A+ +D TH + L P ++
Sbjct: 63 DPETQKRIQKMAGRKIAE--MAKESPVAVD-----THSTVSTPKGYLPGLPSWVLNELNP 115
Query: 531 -KFILATTEPQKI 542
I+ T +I
Sbjct: 116 DLIIVVETTGDEI 128
>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order
transition, phosphate-loop, pyridoxal phospha
selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A
{Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*
Length = 450
Score = 31.5 bits (71), Expect = 2.3
Identities = 25/127 (19%), Positives = 44/127 (34%), Gaps = 12/127 (9%)
Query: 152 KIDYKKVEYLAKKNKPKLIIAGASAYSQYI-----DFERFYHIAKNINSYFMVDMAHYAG 206
+ D K VE ++ P+ I+ S + + E I N + +V+ A+
Sbjct: 181 RTDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDRLEELAVICANYDIPHVVNNAYGLQ 240
Query: 207 LIAAGEYPNP---VPFADFITSTTHKSLRGPRGGFILMKKKYKKIIN--SAVFPGIQGG- 260
V D + K+ P GG I+ + I S ++PG
Sbjct: 241 SSKCMHLIQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFN-EPFIQDISKMYPGRASAS 299
Query: 261 PLMHVIA 267
P + V+
Sbjct: 300 PSLDVLI 306
>2bs2_A Quinol-fumarate reductase flavoprotein subunit A; 2Fe-2S, 3Fe-4S,
4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD
HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.7.3.1
c.3.1.4 d.168.1.1 PDB: 2bs3_A* 1e7p_A* 2bs4_A* 1qlb_A*
Length = 660
Score = 31.5 bits (72), Expect = 2.4
Identities = 14/81 (17%), Positives = 25/81 (30%), Gaps = 19/81 (23%)
Query: 794 GAAVRATRAQVDRI-------LYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVT 845
G T D + + ++ + + E LI + K G V
Sbjct: 143 GTKKWRTCYTADATGHTMLFAVANECLKL------GVSIQDRKEAIALIHQDGKCYGAVV 196
Query: 846 ---KIG--IKFFSKTVILTTG 861
G I + +K ++ TG
Sbjct: 197 RDLVTGDIIAYVAKGTLIATG 217
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 30.5 bits (68), Expect = 2.7
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID 443
+ TG GVGK+T+ + + L+ GI+
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGIN 31
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 30.5 bits (68), Expect = 2.7
Identities = 9/31 (29%), Positives = 12/31 (38%), Gaps = 4/31 (12%)
Query: 417 LFTGTRGVGKTTISRILAKCLN----CIGID 443
+ G GK+ I R L L G+D
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37
>2vhd_A Cytochrome C551 peroxidase; iron, heme, transport, metal-binding,
oxidoreduc electron transport; HET: HEC; 2.3A
{Pseudomonas aeruginosa} SCOP: a.3.1.5 a.3.1.5 PDB:
1eb7_A*
Length = 323
Score = 30.7 bits (70), Expect = 2.9
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
K A+ QL L ++V++++
Sbjct: 269 KDAVAIMGNAQLGKQLAPDDVENIV 293
>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'-
phosphate, calcium binding site, structural genomics,
PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP:
c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*
Length = 347
Score = 30.7 bits (70), Expect = 2.9
Identities = 10/53 (18%), Positives = 26/53 (49%)
Query: 290 KNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICN 342
+NA+ L+ L + G + K++++++ N K+ L ++ ++ N
Sbjct: 260 ENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKVNAHGFIEALRNSGVLAN 312
>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent
enzymes, purine metabolism transaminases,
aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}
Length = 416
Score = 31.1 bits (71), Expect = 2.9
Identities = 9/49 (18%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
Query: 70 FIDLIEKIAINRLKKIFNAEAANVQ--PHSGSQANQAVFFSVLNPGDTI 116
F ++ + + L+++F + + +AV SV+ P D +
Sbjct: 42 FTGIMNET-MEMLRELFQTKNRWAYPIDGTSRAGIEAVLASVIEPEDDV 89
>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein,
PLP-dependent transferase; HET: LLP; 1.75A {Aedes
aegypti} PDB: 2hui_A* 2huu_A*
Length = 393
Score = 31.1 bits (71), Expect = 3.0
Identities = 9/49 (18%), Positives = 19/49 (38%), Gaps = 3/49 (6%)
Query: 70 FIDLIEKIAINRLKKIFNAEAANVQ--PHSGSQANQAVFFSVLNPGDTI 116
+ +++ I ++ +F SG +A ++L GD I
Sbjct: 50 TLKIMDDI-KEGVRYLFQTNNIATFCLSASGHGGMEATLCNLLEDGDVI 97
>1kf6_A Fumarate reductase flavoprotein; respiration, fumarate reductace,
succinate dehydrogenase, CO quinol, quinone,
oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia
coli} SCOP: a.7.3.1 c.3.1.4 d.168.1.1 PDB: 1kfy_A*
1l0v_A* 2b76_A* 3cir_A* 3p4p_A* 3p4q_A* 3p4r_A* 3p4s_A*
Length = 602
Score = 31.1 bits (71), Expect = 3.1
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 18/81 (22%)
Query: 794 GAAVRATRAQVDRI-------LYKQAIRFYLENQLNLYLFQE-EVDDLIIKTNKILGVVT 845
G + T D+ L++ +++F + F E V D+++ + G+V
Sbjct: 119 GMKIERTWFAADKTGFHMLHTLFQTSLQFP-----QIQRFDEHFVLDILVDDGHVRGLVA 173
Query: 846 ---KIG--IKFFSKTVILTTG 861
G ++ + V++ TG
Sbjct: 174 MNMMEGTLVQIRANAVVMATG 194
>1iqc_A DI-heme peroxidase; proteobacteria, B subdivision,
ammonia-oxidizing bacteria, oxidoreductase; HET: HEM;
1.80A {Nitrosomonas europaea} SCOP: a.3.1.5 a.3.1.5
Length = 308
Score = 30.7 bits (70), Expect = 3.4
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
+QA+ QLN ++EV ++
Sbjct: 252 EQAVETMGRIQLNREFNKDEVSKIV 276
>3o5c_A Cytochrome C551 peroxidase; diheme cytochrome, hydrogen peroxide,
oxidoreductase; HET: HEM; 1.80A {Shewanella oneidensis}
Length = 320
Score = 30.7 bits (70), Expect = 3.4
Identities = 5/25 (20%), Positives = 14/25 (56%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
++A+ + QL L ++E +++
Sbjct: 260 EEAVNTMADIQLGQKLTEKETKEMV 284
>1zzh_A Cytochrome C peroxidase; heme groups, oxidoreductase; HET: HEC;
2.70A {Rhodobacter capsulatus}
Length = 328
Score = 30.7 bits (70), Expect = 3.5
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
++A+ +QL L +VD +
Sbjct: 272 REAVSVMANSQLGATLDDTQVDQIT 296
>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP;
2.58A {Klebsiella pneumoniae}
Length = 411
Score = 30.7 bits (70), Expect = 3.6
Identities = 15/105 (14%), Positives = 36/105 (34%), Gaps = 10/105 (9%)
Query: 70 FIDLIEKIAINRLKKIFNAEAANV--QPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
+ ++ + + +F E + +A+ S + PGD ++ + G
Sbjct: 44 MTHYMNEV-MALYRGVFRTENRWTMLVDGTSRAGIEAILVSAIRPGDKVL---VPVFGRF 99
Query: 128 THGM--MLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLI 170
H + + + E +VE K+ +P+L+
Sbjct: 100 GHLLCEIARRCR--AEVHTIEVPWGEVFTPDQVEDAVKRIRPRLL 142
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics,
NPPSFA, national P protein structural and functional
analyses; 2.10A {Aeropyrum pernix}
Length = 186
Score = 29.8 bits (68), Expect = 3.6
Identities = 14/32 (43%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGI-----DG 444
TG G GKTTI+ LA L G DG
Sbjct: 18 LTGLPGSGKTTIATRLADLLQKEGYRVEVLDG 49
>4fc7_A Peroxisomal 2,4-dienoyl-COA reductase; SDR/rossmann fold,
peroxisomal beta-oxidation, oxidoreductas; HET: NAP COA;
1.84A {Homo sapiens} PDB: 4fc6_A*
Length = 277
Score = 30.3 bits (69), Expect = 3.8
Identities = 10/33 (30%), Positives = 15/33 (45%), Gaps = 3/33 (9%)
Query: 240 LMKKKYKKIIN-SAVFPGIQGGPLM-HVIAAKA 270
+ I+N +A G +G L H +AKA
Sbjct: 151 FFRDHGGVIVNITATL-GNRGQALQVHAGSAKA 182
>3hq9_A Cytochrome C551 peroxidase; oxidoreductase; HET: HEM; 1.52A
{Geobacter sulfurreducens} PDB: 3hq6_A* 3hq8_A* 3hq7_A*
Length = 345
Score = 30.4 bits (69), Expect = 4.3
Identities = 5/25 (20%), Positives = 11/25 (44%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
K+A+ Q + L +E + +
Sbjct: 291 KEAVAVMGSAQFGIKLSDDESEAIA 315
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1
(PAPS synthetase...; NMP-kinase fold, protein in complex
with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens}
PDB: 2pey_A* 2ax4_A*
Length = 179
Score = 29.8 bits (68), Expect = 4.5
Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 5/32 (15%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGI-----DG 444
TG G GKTT+S L + L C GI DG
Sbjct: 10 LTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus
thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Length = 311
Score = 30.2 bits (69), Expect = 4.5
Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 8/53 (15%)
Query: 393 LIGQNHISKSLINAL--------DKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
++GQ+ +++ +A+ D R ++LF G GVGKT +++ LA L
Sbjct: 19 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATL 71
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 30.5 bits (68), Expect = 4.5
Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
Query: 402 SLINALDKKRLHHAY----LFTGTRGVGKTTISRILA 434
+L L+K R+ + + G GKT++SR L
Sbjct: 123 NLHFMLEKIRMSNFEGPRVVIVGGSQTGKTSLSRTLC 159
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics
center for infectious disease, ssgcid, ADP, DCMP, D
transferase; 2.00A {Mycobacterium smegmatis} PDB: 3r8c_A
4die_A*
Length = 233
Score = 29.7 bits (68), Expect = 4.6
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 423 GVGKTTISRILAKCLNCIGID 443
G GK+++SR LA+ L +D
Sbjct: 19 GTGKSSVSRGLARALGARYLD 39
>3lzw_A Ferredoxin--NADP reductase 2; ferredoxin reductase, FAD, NADPH,
flavoprotein, oxidor; HET: FAD NAP; 1.80A {Bacillus
subtilis} PDB: 3lzx_A*
Length = 332
Score = 30.2 bits (69), Expect = 4.6
Identities = 14/54 (25%), Positives = 25/54 (46%), Gaps = 6/54 (11%)
Query: 808 LYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861
L +Q +F L + V+ + + + + +VT +SKTVI+T G
Sbjct: 73 LKEQMAKFDQTICLE-----QAVESVEKQADGVFKLVTNEE-THYSKTVIITAG 120
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 30.4 bits (68), Expect = 4.7
Identities = 20/134 (14%), Positives = 40/134 (29%), Gaps = 10/134 (7%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
+ +D L+ A TG G GK++ +N + GN + G V +
Sbjct: 59 SDALKEIDSSVLNVA--VTGETGSGKSSF-------INTLRGIGNEEEGAAKTGVVEVTM 109
Query: 461 KIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAML 520
+ + + GI + + Y ++I + +
Sbjct: 110 ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI-DIA 168
Query: 521 KTLEEPPKYIKFIL 534
K + K F+
Sbjct: 169 KAISMMKKEFYFVR 182
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 29.7 bits (67), Expect = 4.8
Identities = 11/33 (33%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
Query: 419 TGTRGVGKTTISRILAKCLN-------CIGIDG 444
+G G GK+T+S LA L+ + +DG
Sbjct: 28 SGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDG 60
>2w58_A DNAI, primosome component (helicase loader); ATP-binding,
nucleotide-binding, hydrolase; HET: ADP; 2.50A
{Geobacillus kaustophilus HTA426}
Length = 202
Score = 29.7 bits (67), Expect = 5.0
Identities = 9/64 (14%), Positives = 24/64 (37%), Gaps = 7/64 (10%)
Query: 381 LARKYRPSNFNTLIGQN-------HISKSLINALDKKRLHHAYLFTGTRGVGKTTISRIL 433
+ R+ ++ + + + ++ + + + G+ GVGKT + +
Sbjct: 15 MPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEPGKKMKGLYLHGSFGVGKTYLLAAI 74
Query: 434 AKCL 437
A L
Sbjct: 75 ANEL 78
>2i0z_A NAD(FAD)-utilizing dehydrogenases; structural genomics, PSI-2,
protein structure initiative, midwest center for
structural genomics, MCSG; HET: FAD; 1.84A {Bacillus
cereus} SCOP: c.3.1.8 e.74.1.1
Length = 447
Score = 30.2 bits (69), Expect = 5.1
Identities = 5/35 (14%), Positives = 14/35 (40%)
Query: 827 QEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861
V+ + + + V+ + G + V++ G
Sbjct: 154 NTPVETIEYENGQTKAVILQTGEVLETNHVVIAVG 188
>1nml_A DI-HAEM cytochrome C peroxidase; oxidoreductase, electron
transport; HET: HEM CIT; 2.20A {Marinobacter
hydrocarbonoclasticus} SCOP: a.3.1.5 a.3.1.5 PDB:
1rz5_A* 1rz6_A*
Length = 326
Score = 30.0 bits (68), Expect = 5.1
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
++A+ QL L +EV ++
Sbjct: 269 EEAVAVMGTAQLGTELNNDEVKSIV 293
>1fl2_A Alkyl hydroperoxide reductase subunit F; reactive oxygen, FAD,
disulphi oxidoreductase, oxidoreductase; HET: FAD; 1.90A
{Escherichia coli} SCOP: c.3.1.5 c.3.1.5
Length = 310
Score = 30.1 bits (69), Expect = 5.3
Identities = 9/57 (15%), Positives = 22/57 (38%), Gaps = 9/57 (15%)
Query: 808 LYKQAIRF---YLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861
L + +++Q L V+ + + + T G ++++I+ TG
Sbjct: 62 LKVHVDEYDVDVIDSQSASKLIPAAVEGGLHQ------IETASGAVLKARSIIVATG 112
>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR
genomics, JCSG, PSI, protein structure initiative, joint
CE structural genomics; HET: PLP; 1.70A {Nostoc SP}
SCOP: c.67.1.3
Length = 393
Score = 29.9 bits (68), Expect = 5.7
Identities = 21/152 (13%), Positives = 54/152 (35%), Gaps = 42/152 (27%)
Query: 70 FIDLIEKIAINRLKKIFNAEAANV--QPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHL 127
F+ L+++I + L+ ++ E +G+ A +A + + PGD +
Sbjct: 65 FLALMDEI-QSLLRYVWQTENPLTIAVSGTGTAAMEATIANAVEPGDVV----------- 112
Query: 128 THGMMLNMSGKW---FNSIC--YGLNKK-------EKIDYKKVEYLAKKNKPKLIIA--- 172
++ +G + + YG + + E +++ + ++P ++
Sbjct: 113 ---LIGV-AGYFGNRLVDMAGRYGADVRTISKPWGEVFSLEELRTALETHRPAILALVHA 168
Query: 173 ----GASAYSQYIDFERFYHIAKNINSYFMVD 200
GA E + + + +VD
Sbjct: 169 ETSTGARQ-----PLEGVGELCREFGTLLLVD 195
>2c1v_A DI-HAEM cytochrome C peroxidase; electron transport, heme,
oxidoreductase, periplasmic; HET: HEC; 1.2A {Paracoccus
pantotrophus} PDB: 2c1u_A*
Length = 338
Score = 30.0 bits (68), Expect = 5.7
Identities = 4/25 (16%), Positives = 12/25 (48%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
+A++ Q+ L ++ +D+
Sbjct: 283 AEAVKIMSSAQIGTELTDQQAEDIT 307
>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A
{Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*
Length = 392
Score = 29.9 bits (68), Expect = 5.8
Identities = 9/48 (18%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 70 FIDLIEKIAINRLKKIFNAE-AANVQPHSGSQANQAVFFSVLNPGDTI 116
F L EK+ +++ +K + +A S+++P D +
Sbjct: 40 FQLLYEKV-VDKAQKAMRLSNKPVILHGEPVLGLEAAAASLISPDDVV 86
>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center
for structural genomics, JCSG, protein structure INI
PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}
Length = 379
Score = 30.1 bits (68), Expect = 5.8
Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Query: 70 FIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIM 117
F +++ + ++ LK ++NAEAA + P SG+ +AV L + +
Sbjct: 33 FQEVMNDL-LSNLKTVYNAEAAVIIPGSGTYGMEAV-ARQLTIDEDCL 78
>1iug_A Putative aspartate aminotransferase; wild type,
pyridoxal-5'-phosphate form, riken structural
genomics/proteomics initiative, RSGI; HET: LLP; 2.20A
{Thermus thermophilus} SCOP: c.67.1.3
Length = 352
Score = 29.9 bits (68), Expect = 5.9
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Query: 70 FIDLIEKIAINRLKKIFNAEA-ANVQPHSGSQANQAVFFSVLNPGDTI 116
++ K L++ F E + SG+ A +A+ ++ PG+ +
Sbjct: 32 AREVFLKA-RGLLREAFRTEGEVLILTGSGTLAMEALVKNLFAPGERV 78
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold,
transferase-transferase complex; HET: ADX ANP; 1.79A
{Arabidopsis thaliana} PDB: 4fxp_A*
Length = 200
Score = 29.5 bits (67), Expect = 6.0
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGI 442
TG G GK+T++ L + L G
Sbjct: 30 VTGLSGSGKSTLACALNQMLYQKGK 54
>1hyu_A AHPF, alkyl hydroperoxide reductase subunit F; thiol-thiolate
hydrogen bond, nucleotide binding fold, thior reductase,
thioredoxin; HET: FAD; 2.00A {Salmonella typhimurium}
SCOP: c.3.1.5 c.3.1.5 c.47.1.2 c.47.1.2 PDB: 1zyn_A
1zyp_A
Length = 521
Score = 30.0 bits (68), Expect = 6.0
Identities = 8/57 (14%), Positives = 21/57 (36%), Gaps = 9/57 (15%)
Query: 808 LYKQAIRF---YLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861
L + +++Q L + + + + T G ++++I+ TG
Sbjct: 273 LKAHVSDYDVDVIDSQSASKLVPAATEGGLHQ------IETASGAVLKARSIIIATG 323
>1qf6_A THRRS, threonyl-tRNA synthetase; tRNA(Thr), AMP, mRNA, aminoacylati
translational regulation, protein/RNA, ligase-RNA
complex; HET: H2U AET G7M 5MU PSU AMP; 2.90A
{Escherichia coli} SCOP: c.51.1.1 d.15.10.1 d.67.1.1
d.104.1.1
Length = 642
Score = 29.8 bits (68), Expect = 7.3
Identities = 15/44 (34%), Positives = 19/44 (43%), Gaps = 10/44 (22%)
Query: 292 AKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILE 335
L++ L GIR+ DLRN+KI KI E L
Sbjct: 555 VNELTQKLSNAGIRVK----------ADLRNEKIGFKIREHTLR 588
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.8 bits (67), Expect = 7.6
Identities = 5/40 (12%), Positives = 10/40 (25%), Gaps = 6/40 (15%)
Query: 114 DTIMGM--SLQEGG----HLTHGMMLNMSGKWFNSICYGL 147
+ GM + + +N W N +
Sbjct: 1056 SALRGMFKDRFKDEPVQNDILQESFINTMSAWVNMLLISS 1095
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation,
nucleotide metab transferase; HET: C5P; 1.50A {Thermus
thermophilus} PDB: 3akc_A* 3akd_A*
Length = 208
Score = 28.9 bits (66), Expect = 7.7
Identities = 5/21 (23%), Positives = 11/21 (52%)
Query: 423 GVGKTTISRILAKCLNCIGID 443
GK++++R +A L +
Sbjct: 12 ASGKSSVARRVAAALGVPYLS 32
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase;
NMR {Homo sapiens} SCOP: c.37.1.11
Length = 189
Score = 28.9 bits (64), Expect = 7.8
Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 25/155 (16%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQ--------------PCGK----CSV 458
TG GVGKTT+ ++ L G+ +G T + G V
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRV 64
Query: 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA--- 515
++ G + ++A + + ++ VIDE+ + +
Sbjct: 65 GLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLF 124
Query: 516 FNAMLKTLEEPPKYIKFILAT-TEPQKIPITVLSR 549
A+ +TL P IL T P+ P+ ++
Sbjct: 125 IQAVRQTLSTPG---TIILGTIPVPKGKPLALVEE 156
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide
monophosphate kinase,, transferase; 1.75A {Escherichia
coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A*
1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Length = 227
Score = 29.0 bits (66), Expect = 8.0
Identities = 7/21 (33%), Positives = 12/21 (57%)
Query: 423 GVGKTTISRILAKCLNCIGID 443
G GK T+ + +A+ L +D
Sbjct: 15 GAGKGTLCKAMAEALQWHLLD 35
>3le2_A Serpin-ZX; apoplast, glycoprotein, protease inhibitor, secreted,
serine protease inhibitor, hydrolase; 2.20A {Arabidopsis
thaliana}
Length = 393
Score = 29.6 bits (67), Expect = 8.3
Identities = 17/84 (20%), Positives = 32/84 (38%), Gaps = 16/84 (19%)
Query: 572 NKENIKFE----TSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQK 627
N+ F L++IA G+ G+ +D + + +SS + E
Sbjct: 29 QNSNVIFSPASINVVLSIIAAGSAGATKDQIL---SFLKFSSTDQLNSFSSE-------- 77
Query: 628 YLIQILDALAEQDGNLILSIANKI 651
++ + A +G LS+AN
Sbjct: 78 -IVSAVLADGSANGGPKLSVANGA 100
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase,
transferase; NMR {Streptococcus pneumoniae} SCOP:
c.37.1.1
Length = 236
Score = 29.0 bits (66), Expect = 9.1
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 423 GVGKTTISRILAKCLNCIGID 443
GK+T+++I+AK +D
Sbjct: 26 SSGKSTVAKIIAKDFGFTYLD 46
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A
{Staphylococcus aureus}
Length = 219
Score = 28.9 bits (66), Expect = 9.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 423 GVGKTTISRILAKCLNCIGID 443
GK+TI++ +A L+ I +D
Sbjct: 13 AAGKSTIAKRVASELSMIYVD 33
>1v59_A Dihydrolipoamide dehydrogenase; 2-oxoacid dehydroganese complex,
pyruvate dehydrogenase complex; HET: FAD NAD; 2.20A
{Saccharomyces cerevisiae} SCOP: c.3.1.5 c.3.1.5
d.87.1.1 PDB: 1jeh_A*
Length = 478
Score = 29.4 bits (67), Expect = 9.5
Identities = 17/86 (19%), Positives = 24/86 (27%), Gaps = 30/86 (34%)
Query: 158 VEYLAKKNK------------PKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAHYA 205
+E L KKNK I + E KNI
Sbjct: 102 IELLFKKNKVTYYKGNGSFEDETKIRVTPVDGLEGTVKEDHILDVKNI------------ 149
Query: 206 GLIAAGEYPNPVPFADF-----ITST 226
++A G P P + ++ST
Sbjct: 150 -IVATGSEVTPFPGIEIDEEKIVSST 174
>1yxm_A Pecra, peroxisomal trans 2-enoyl COA reductase; perioxisomes, fatty
acid synthesis, short-chain dehydrogenases/reductases,
structural genomics; HET: ADE; 1.90A {Homo sapiens}
SCOP: c.2.1.2
Length = 303
Score = 29.2 bits (66), Expect = 9.6
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 2/31 (6%)
Query: 241 MKKKYKKIINSAVFPGIQGGPLM-HVIAAKA 270
MK+ I+N V P G PL H AA+A
Sbjct: 147 MKEHGGSIVNIIV-PTKAGFPLAVHSGAARA 176
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase
fold, transferase; 2.02A {Caenorhabditis elegans} SCOP:
d.144.1.8
Length = 429
Score = 29.2 bits (64), Expect = 9.8
Identities = 23/174 (13%), Positives = 49/174 (28%), Gaps = 17/174 (9%)
Query: 463 DNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKT 522
G +YI S I + + +VH L +
Sbjct: 146 SGGRLEEYIPSRPLSC-----------HEISLAHMSTKIAKRVAKVHQLEVPIWKEPDYL 194
Query: 523 LEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKF---- 578
E +++K + T + + + C ++ + + L ++
Sbjct: 195 CEALQRWLKQLTGTVDAEHR-FDLPEECGVSSVNCLDLARELEFLRAHISLSKSPVTFCH 253
Query: 579 -ETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQ 631
+ N++ A SL+D+ + N L +ID +Y
Sbjct: 254 NDLQEGNILLPKASSGNIRMPSLSDETQALGNSLSAFNPADPRLVLIDFEYASY 307
>4fk1_A Putative thioredoxin reductase; structural genomics, niaid,
national institute of allergy AN infectious diseases;
HET: MSE FAD; 2.40A {Bacillus anthracis} PDB: 4fk1_C*
Length = 304
Score = 29.1 bits (66), Expect = 10.0
Identities = 10/56 (17%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
Query: 806 RILYKQAIRFYLENQLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTG 861
I + +++ + +++ V + ++ + +VTK K+ ++ V+L TG
Sbjct: 64 EIGLNEVMKYPSV-----HYYEKTVVMITKQSTGLFEIVTKDHTKYLAERVLLATG 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.391
Gapped
Lambda K H
0.267 0.0809 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 20,490,847
Number of extensions: 1304356
Number of successful extensions: 3427
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3303
Number of HSP's successfully gapped: 245
Length of query: 1342
Length of database: 6,701,793
Length adjustment: 105
Effective length of query: 1237
Effective length of database: 3,770,088
Effective search space: 4663598856
Effective search space used: 4663598856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (27.9 bits)