RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy13354
(1342 letters)
>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 405
Score = 469 bits (1208), Expect = e-154
Identities = 215/376 (57%), Positives = 290/376 (77%), Gaps = 1/376 (0%)
Query: 6 ENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYY 65
+ L + DP+++ I +E++RQ+ IELIASEN+ S AVMEAQG++LTNKYAEGYPG+RYY
Sbjct: 2 KYLPQQDPQVFAAIEQERKRQHAKIELIASENFVSRAVMEAQGSVLTNKYAEGYPGRRYY 61
Query: 66 GGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGG 125
GGC+++D++E++A R K++F AE ANVQPHSG+QAN AV+F+VL GDT++GM+L GG
Sbjct: 62 GGCEYVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTVLEHGDTVLGMNLSHGG 121
Query: 126 HLTHGMMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFE 184
HLTHG +N SG +N + YG++ + IDY V A+ ++PKLI+A ASAY + IDF
Sbjct: 122 HLTHGSPVNFSGVQYNFVAYGVDPETHVIDYDDVREKARLHRPKLIVAAASAYPRIIDFA 181
Query: 185 RFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKK 244
+F IA + +Y MVDMAH AGL+AAG +PNPVP+A F+T+TTHK+LRGPRGG IL +++
Sbjct: 182 KFREIADEVGAYLMVDMAHIAGLVAAGLHPNPVPYAHFVTTTTHKTLRGPRGGMILCQEQ 241
Query: 245 YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGI 304
+ K I+ A+FPGIQGGPLMHVIAAKAVAF E L+ DFK Y K+VV NAK L+ L G
Sbjct: 242 FAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAKRLASALQNEGF 301
Query: 305 RIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSS 364
+VSGGT +H++LVDLR +++TGK AE +L+ I NKN+IP DPE P+ TSGIR+G++
Sbjct: 302 TLVSGGTDNHLLLVDLRPQQLTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTA 361
Query: 365 AITTRGFSELEIIKVV 380
A+TTRGF E+ ++
Sbjct: 362 AVTTRGFGLEEMDEIA 377
>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia
coli [TaxId: 562]}
Length = 416
Score = 464 bits (1195), Expect = e-152
Identities = 217/380 (57%), Positives = 288/380 (75%), Gaps = 3/380 (0%)
Query: 4 KNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKR 63
+ N++ D ++W+ + +EK RQ +IELIASENYTS VM+AQG+ LTNKYAEGYPGKR
Sbjct: 3 REMNIADYDAELWQAMEQEKVRQEEHIELIASENYTSPRVMQAQGSQLTNKYAEGYPGKR 62
Query: 64 YYGGCKFIDLIEKIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQE 123
YYGGC+++D++E++AI+R K++F A+ ANVQPHSGSQAN AV+ ++L PGDT++GM+L
Sbjct: 63 YYGGCEYVDIVEQLAIDRAKELFGADYANVQPHSGSQANFAVYTALLEPGDTVLGMNLAH 122
Query: 124 GGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF 183
GGHLTHG +N SGK +N + YG++ IDY +E AK++KPK+II G SAYS +D+
Sbjct: 123 GGHLTHGSPVNFSGKLYNIVPYGIDATGHIDYADLEKQAKEHKPKMIIGGFSAYSGVVDW 182
Query: 184 ERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKK 243
+ IA +I +Y VDMAH AGL+AAG YPNPVP A +T+TTHK+L GPRGG IL K
Sbjct: 183 AKMREIADSIGAYLFVDMAHVAGLVAAGVYPNPVPHAHVVTTTTHKTLAGPRGGLILAKG 242
Query: 244 KYK---KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILD 300
+ K +NSAVFPG QGGPLMHVIA KAVA KE ++P+FK YQ+QV KNAK + ++
Sbjct: 243 GSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQQVAKNAKAMVEVFL 302
Query: 301 QRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIR 360
+RG ++VSGGT +H+ LVDL +K +TGK A++ L ANI NKNS+PNDP+ P+ TSGIR
Sbjct: 303 ERGYKVVSGGTDNHLFLVDLVDKNLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIR 362
Query: 361 LGSSAITTRGFSELEIIKVV 380
+G+ AIT RGF E E ++
Sbjct: 363 VGTPAITRRGFKEAEAKELA 382
>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 470
Score = 436 bits (1123), Expect = e-141
Identities = 179/447 (40%), Positives = 255/447 (57%), Gaps = 42/447 (9%)
Query: 5 NENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRY 64
+ L D ++++II KE RQ +ELIASEN+ S AV+EA G+ L NKY+ GYPG+RY
Sbjct: 9 AQPLKDSDAEVYDIIKKESNRQRVGLELIASENFASRAVLEALGSCLNNKYSLGYPGQRY 68
Query: 65 YGGCKFIDLIEKIAINRLKKIFNAEA----ANVQPHSGSQANQAVFFSVLNPGDTIMGMS 120
YGG + ID +E + R + + + NVQP+SGS AN AV+ +++ P IMG+
Sbjct: 69 YGGTEHIDELETLCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTALVEPHGRIMGLD 128
Query: 121 LQEGGHLTHGMM-----LNMSGKWFNSICYGLN-KKEKIDYKKVEYLAKKNKPKLIIAGA 174
L +GGHLTHG M ++ + +F S+ Y +N IDY ++E A+ PKLIIAG
Sbjct: 129 LPDGGHLTHGFMTDKKKISATSIFFESMAYKVNPDTGYIDYDRLEENARLFHPKLIIAGT 188
Query: 175 SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP 234
S YS+ +D+ R IA +Y M DMAH +GL+ AG P+P +T+TTHK+LRG
Sbjct: 189 SCYSRNLDYGRLRKIADENGAYLMADMAHISGLVVAGVVPSPFEHCHVVTTTTHKTLRGC 248
Query: 235 RGGFILMKK---------------KYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKP 279
R G I ++ + +INSAVFPG+QGGP H IA AVA K+ + P
Sbjct: 249 RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTP 308
Query: 280 DFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESANI 339
+FK YQ+QVV N + LS L + G +IV+GG+ +H+ILVDLR+K G AE +LE+ +I
Sbjct: 309 EFKEYQRQVVANCRALSAALVELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSI 368
Query: 340 ICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV----------------LAR 383
CNKN+ P D SG+RLG+ A+T+RG E + KV
Sbjct: 369 ACNKNTCPGDK-SALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTVQIQDDTGP 427
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKK 410
+ F + + + + AL ++
Sbjct: 428 RATLKEFKEKLAGDEKHQRAVRALRQE 454
>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human
(Homo sapiens), mitochondrial [TaxId: 9606]}
Length = 463
Score = 416 bits (1070), Expect = e-133
Identities = 179/403 (44%), Positives = 249/403 (61%), Gaps = 26/403 (6%)
Query: 3 IKNENLSKIDPKIWEIILKEKQRQNNNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGK 62
E+LS DP++WE++ +EK RQ +ELIASEN+ S A +EA G+ L NKY+EGYPGK
Sbjct: 3 TGQESLSDSDPEMWELLQREKDRQCRGLELIASENFCSRAALEALGSCLNNKYSEGYPGK 62
Query: 63 RYYGGCKFIDLIEKIAINRLKKIFNAEAA----NVQPHSGSQANQAVFFSVLNPGDTIMG 118
RYYGG + +D IE + R + F+ + A NVQP+SGS AN AV+ ++L P D IMG
Sbjct: 63 RYYGGAEVVDEIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTALLQPHDRIMG 122
Query: 119 MSLQEGGHLTHG-----MMLNMSGKWFNSICYGLNKK-EKIDYKKVEYLAKKNKPKLIIA 172
+ L +GGHLTHG ++ + +F S+ Y LN K IDY ++ A+ +P+LIIA
Sbjct: 123 LDLPDGGHLTHGYMSDVKRISATSIFFESMPYKLNPKTGLIDYNQLALTARLFRPRLIIA 182
Query: 173 GASAYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHKSLR 232
G SAY++ ID+ R + + ++ + DMAH +GL+AA P+P AD +T+TTHK+LR
Sbjct: 183 GTSAYARLIDYARMREVCDEVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLR 242
Query: 233 GPRGGFILMKKKYK---------------KIINSAVFPGIQGGPLMHVIAAKAVAFKEVL 277
G R G I +K K IN AVFP +QGGP H IAA AVA K+
Sbjct: 243 GARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQAC 302
Query: 278 KPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITGKIAESILESA 337
P F+ Y QV+KNA+ ++ L +RG +VSGGT +H++LVDLR K + G AE +LE
Sbjct: 303 TPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELV 362
Query: 338 NIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
+I NKN+ P D G+RLG+ A+T+R F E + +VV
Sbjct: 363 SITANKNTCPGDR-SAITPGGLRLGAPALTSRQFREDDFRRVV 404
>d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III,
N-domain {Escherichia coli [TaxId: 562]}
Length = 239
Score = 227 bits (579), Expect = 3e-68
Identities = 129/242 (53%), Positives = 176/242 (72%), Gaps = 5/242 (2%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNC 439
VLARK+RP F ++GQ H+ +L N L R+HHAYLF+GTRGVGKT+I+R+LAK LNC
Sbjct: 1 VLARKWRPQTFADVVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLNC 60
Query: 440 IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
GIT+ PCG C C +I+ G F+D IE+DAAS + + LL+ YAP R
Sbjct: 61 -----ETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGR 115
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKML 559
+K+Y+IDEVHML+ H+FNA+LKTLEEPP+++KF+LATT+PQK+P+T+LSRC+QF+LK +
Sbjct: 116 FKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPVTILSRCLQFHLKALD 175
Query: 560 HHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQE 619
I + L +ILN+E+I E AL L+A A+GS+RDALSLTDQAI +++ ++
Sbjct: 176 VEQIRHQLEHILNEEHIAHEPRALQLLARAAEGSLRDALSLTDQAIASGDGQVSTQAVSA 235
Query: 620 ML 621
ML
Sbjct: 236 ML 237
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 166 bits (421), Expect = 2e-44
Identities = 54/412 (13%), Positives = 119/412 (28%), Gaps = 64/412 (15%)
Query: 25 RQNNNIELIASEN-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLK 83
+ N L+ SE+ + L G + + A G + G + + + +K
Sbjct: 29 KSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSYYALAE----SVK 84
Query: 84 KIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTH-------------G 130
IF + + H G A Q ++ + G+ + ++ G
Sbjct: 85 NIFGYQYT-IPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDTTQGHSQING 143
Query: 131 MMLNMSGKWFNSICYGLNK-KEKIDYKKVEYLAKKNKPKLII---------AGASAYSQY 180
+ K D + +E ++ P + +
Sbjct: 144 CTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSL 203
Query: 181 IDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNP--------------VPFADFITST 226
+ + Y IAK + ++D A +A + +AD + +
Sbjct: 204 ANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAEYKDWTIEQITRETYKYADMLAMS 263
Query: 227 THKSLRGPRGGFILMKKK---YKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDF-- 281
K P GG + MK + +G P + A+ V D
Sbjct: 264 AKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMN 323
Query: 282 KIYQKQVVKNAKILSKILDQRGIRIVSGG-----TKSHIILVDLRNKKITGK-IAESILE 335
+ + + L L++ G+ G + +L + + + +A + +
Sbjct: 324 LDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDAGKLLPHIPADQFPAQALACELYK 383
Query: 336 SANIICNKNSIP-------NDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
A I + + P +RL I +++ + ++
Sbjct: 384 VAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRL---TIPRATYTQTHMDFII 432
>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain
{Lactobacillus sp., strain 30a [TaxId: 1591]}
Length = 462
Score = 155 bits (393), Expect = 6e-41
Identities = 58/420 (13%), Positives = 103/420 (24%), Gaps = 60/420 (14%)
Query: 28 NNIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKF-IDLIE----------- 75
+++ S QG K+ G ++G F DL
Sbjct: 5 KSLKEYVSRYLIQFDCPGHQGGQYYRKHPAGREFYDFFGETVFRADLCNADVALGDLLIH 64
Query: 76 ----KIAINRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGM 131
A +++NA+ S AN V ++++ GD ++ +
Sbjct: 65 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSALVSNGDLVLFDRNNHKSVYNSAL 124
Query: 132 MLNMSGKWFNSICY------GLNKKEKIDYKKVEYLAKKNKPK----------LIIAGAS 175
+ + G D KK+ LA K P+ +I +
Sbjct: 125 AMAGGRPVYLQTNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGT 184
Query: 176 AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPN----------PVPFADFITS 225
+ ++ Y D A N P +
Sbjct: 185 YDGTIYNAHEVVKRIGHLCDYIEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQ 244
Query: 226 TTHKSLRGPRGGFILMKKK----------YKKIINSAVFPGIQGGPLMHVIAAKAVAFKE 275
+ HK G + KK K N++ + P + AA V
Sbjct: 245 SVHKQQAGFSQTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSPFYPMYAALDVNAAM 304
Query: 276 VLKPDFKIYQKQVVKNAKILSK-------ILDQRGIRIVSGGTKSHIILVDLRNKKITGK 328
+ ++ K + +V+G D+ N +
Sbjct: 305 QEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWR 364
Query: 329 IAESILESANIICNKNSIPNDPEK-PYFTSGIRLGSSAITTRGFSELEIIKVVLARKYRP 387
+ A N DP K T GI + G + + P
Sbjct: 365 FEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIP 424
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 147 bits (371), Expect = 4e-38
Identities = 67/405 (16%), Positives = 119/405 (29%), Gaps = 60/405 (14%)
Query: 24 QRQNNNIELIASEN-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82
Q N L+ S++ Y L + ++A G Y G + +EK +
Sbjct: 29 QEAGYNTFLLNSKDIYIDLLTDSGTNAMSDKQWAGMMIGDEAYAGSENFYHLEK----TV 84
Query: 83 KKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSL---QEGGHLTHGMMLNMSGKW 139
K++F + V H G A + + PG + G +G +
Sbjct: 85 KELFGFKHI-VPTHQGRGAENLLSQLAIKPGQYVAGNMYFTTTRFHQEKNGATFVDIVRD 143
Query: 140 FNSICYGLNK-KEKIDYKKVEYLAKKNKPKLI---------IAGASAYSQYIDFERFYHI 189
K ID K+ L K+ + I + + +
Sbjct: 144 EAHDASLNLPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEM 203
Query: 190 AKNINSYFMVDMAH--------------YAGLIAAGEYPNPVPFADFITSTTHKSLRGPR 235
A D Y + +AD T + K
Sbjct: 204 ASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI 263
Query: 236 GGFILMK-----KKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVK 290
GGF+ M K+++ GG + A A+ +E ++ + Y + VK
Sbjct: 264 GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYE---YIEHRVK 320
Query: 291 NAKILSKILDQRGIRIVSGGTKSHIILVDLR--------NKKITGKIAESILESANIICN 342
+ L L + G+ IV T H + +D R ++ +A SI +
Sbjct: 321 QVRYLGDKLREAGVPIVE-PTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSM 379
Query: 343 KNSIPNDPEKPYF-------TSGIRLGSSAITTRGFSELEIIKVV 380
+ I + +RL I R ++ + V
Sbjct: 380 ERGIVSAGRSKETGENHRPKLETVRL---TIPRRVYTYAHMDVVA 421
>d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 252
Score = 137 bits (345), Expect = 1e-36
Identities = 53/251 (21%), Positives = 97/251 (38%), Gaps = 15/251 (5%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGID 443
KYRP + N L ++ L + D+ R L G G GK T L + + G+
Sbjct: 4 KYRPKSLNALSHNEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESIFGPGVY 63
Query: 444 GN---GGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGI---------NEMAQLLEQT 491
+ + + ++ D + I +M Q+ Q
Sbjct: 64 RLKIDVRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQD 123
Query: 492 IYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCI 551
+ RYK +I+E + LT A A+ +T+E+ K I+ I+ I + S+C+
Sbjct: 124 SKDGLAHRYKCVIINEANSLTKDAQAALRRTMEKYSKNIRLIMVCDSMSPIIAPIKSQCL 183
Query: 552 QFNLKKMLHHDIVNNLCYILNKENIKFET-SALNLIATGAQGSMRDALSLTDQAINYSSE 610
+I L ++ E I+ ET L IA + G++R +L + + +
Sbjct: 184 LIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQASNGNLRVSLLMLESMA--LNN 241
Query: 611 KITLNSMQEML 621
++ L S ++
Sbjct: 242 ELALKSSSPII 252
>d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon
Pyrococcus furiosus [TaxId: 2261]}
Length = 231
Score = 133 bits (336), Expect = 1e-35
Identities = 68/252 (26%), Positives = 113/252 (44%), Gaps = 28/252 (11%)
Query: 373 ELEIIKVVLARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRI 432
E+++++ KYRP + ++GQ HI K L + + + H LF G GVGKTT +
Sbjct: 6 EVKVLEKPWVEKYRPQRLDDIVGQEHIVKRLKHYVKTGSMPH-LLFAGPPGVGKTTAALA 64
Query: 433 LAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTI 492
LA+ L +++E++A+ RGIN + + +++
Sbjct: 65 LARELFG------------------------ENWRHNFLELNASDERGINVIREKVKEFA 100
Query: 493 YAPI--NARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC 550
A +KI +DE LT A A+ +T+E ++FIL+ KI + SRC
Sbjct: 101 RTKPIGGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC 160
Query: 551 IQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSE 610
F + + DI L YI E ++ L I A+G MR A+++ A +
Sbjct: 161 AIFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDMRRAINILQAAAA-LDK 219
Query: 611 KITLNSMQEMLS 622
KIT ++ + S
Sbjct: 220 KITDENVFMVAS 231
>d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 237
Score = 129 bits (324), Expect = 4e-34
Identities = 53/248 (21%), Positives = 100/248 (40%), Gaps = 17/248 (6%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
KYRP N + + Q+H L L L H LF G G GKT+ L K L
Sbjct: 2 WVEKYRPKNLDEVTAQDHAVTVLKKTLKSANLPH-MLFYGPPGTGKTSTILALTKELYGP 60
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
+ + + G + ++ + +++ ++ + Y
Sbjct: 61 DL--------MKSRILELNASDERGISIVREKVKNFARLTVSKPSKHDLENYP---CPPY 109
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
KI ++DE +T A +A+ +T+E +F L +I + S+C +F K +
Sbjct: 110 KIIILDEADSMTADAQSALRRTMETYSGVTRFCLICNYVTRIIDPLASQCSKFRFKALDA 169
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYS-----SEKITLN 615
+ ++ L +I +EN+K + L I + G +R ++L A + + IT
Sbjct: 170 SNAIDRLRFISEQENVKCDDGVLERILDISAGDLRRGITLLQSASKGAQYLGDGKNITST 229
Query: 616 SMQEMLSI 623
++E+ +
Sbjct: 230 QVEELAGV 237
>d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB
{Thermotoga maritima [TaxId: 2336]}
Length = 238
Score = 126 bits (317), Expect = 4e-33
Identities = 45/249 (18%), Positives = 95/249 (38%), Gaps = 26/249 (10%)
Query: 386 RPSNFNTLIGQNHISKSLINALD----KKRLHHAYLFTGTRGVGKTTISRILAKCLNCIG 441
RP + + IGQ ++ K L AL+ + + L G G+GKTT++ I+A L
Sbjct: 4 RPKSLDEFIGQENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQT-- 61
Query: 442 IDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYK 501
S V + G + + L + + + + +
Sbjct: 62 ----------NIHVTSGPVLVKQGDMAAILTSLERGDVLFIDEIHRLNKAVEELLYSAIE 111
Query: 502 IYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSR-CIQFNLKKMLH 560
+ ID + A K++ + + ATT + + SR I L
Sbjct: 112 DFQIDIMIGKGPSA-----KSIRIDIQPFTLVGATTRSGLLSSPLRSRFGIILELDFYTV 166
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLT----DQAINYSSEKITLNS 616
++ + + +++ E +A +IA ++G+ R A+ LT D +++I +
Sbjct: 167 KELKEIIKRAASLMDVEIEDAAAEMIAKRSRGTPRIAIRLTKRVRDMLTVVKADRINTDI 226
Query: 617 MQEMLSIID 625
+ + + +++
Sbjct: 227 VLKTMEVLN 235
>d2cula1 c.3.1.7 (A:2-231) GidA-related protein TTHA1897 {Thermus
thermophilus [TaxId: 274]}
Length = 230
Score = 125 bits (314), Expect = 1e-32
Identities = 34/204 (16%), Positives = 65/204 (31%), Gaps = 14/204 (6%)
Query: 763 AVLTVLDAMGGIMAIATDKSGI---QFRILNSSKGAAVRATRAQVDRILYKQAIRFYLEN 819
+LT + + K V A A+ +L
Sbjct: 29 GLLTQSLDAVMMPFLPPKPPFPPGSLLERAYDPKDERVWAFHARAKYLLE---------G 79
Query: 820 QLNLYLFQEEVDDLIIKTNKILGVVTKIGIKFFSKTVILTTGTFLNGKIHIGLKSYSAGR 879
L+LFQ L+++ N+++GV T G + V+L G+FL ++ +G AGR
Sbjct: 80 LRPLHLFQATATGLLLEGNRVVGVRTWEGPPARGEKVVLAVGSFLGARLFLGGVVEEAGR 139
Query: 880 FGDFSTTSLAKRLKELQLSHGRLKTGTP--PRIDKRTIDFSKMEEQIGDFDPVPVFSVLG 937
+ S L + L L + P P + + + + + + G
Sbjct: 140 LSEASYPDLLEDLSRLGFRFVEREGEVPETPSTPGYRVRYLAFHPEEWEEKTFRLKRLEG 199
Query: 938 NINLHPKQLSCFITHTNEKTHNII 961
+ +E+ +
Sbjct: 200 LYAVGLCVREGDYARMSEEGKRLA 223
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 131 bits (329), Expect = 1e-32
Identities = 52/410 (12%), Positives = 116/410 (28%), Gaps = 61/410 (14%)
Query: 24 QRQNNNIELIASEN-YTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRL 82
+ N L+ S Y L + +++A G Y G + ++ +
Sbjct: 29 KEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNYYDLKD----KA 84
Query: 83 KKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNS 142
K++FN + + H G A +F +L H +
Sbjct: 85 KELFNYDYI-IPAHQGRGAENILFPVLLKYKQKEGKAKNPVFISNFHFDTTAAHVELNGC 143
Query: 143 ICYGL------------NKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYH-- 188
+ + K D KK++ ++ I+A S + +
Sbjct: 144 KAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMS 203
Query: 189 -------IAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--------------ADFITSTT 227
IAK + ++D A + + +P AD +T +
Sbjct: 204 NLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSA 263
Query: 228 HKSLRGPRGGFILMKKKYK-KIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPD--FKIY 284
K GG + ++ + + ++G +A + +A + + Y
Sbjct: 264 KKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEY 323
Query: 285 QKQVVKNAKILSKILDQRGIRIVSGG------TKSHIILVDLRNKKIT-GKIAESILESA 337
+ K L L + GI I ++ + + + ++ +
Sbjct: 324 LHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQAVINALYLES 383
Query: 338 NIICNKNSIP-------NDPEKPYFTSGIRLGSSAITTRGFSELEIIKVV 380
+ + +K +RL I R ++ + +
Sbjct: 384 GVRAVEIGSFLLGRDPATGEQKHADMEFMRL---TIARRVYTNDHMDYIA 430
>d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 224
Score = 117 bits (293), Expect = 4e-30
Identities = 49/241 (20%), Positives = 90/241 (37%), Gaps = 23/241 (9%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
KYRP + ++G L + H + +G G+GKTT LA L
Sbjct: 5 WVEKYRPQVLSDIVGNKETIDRLQQIAKDGNMPH-MIISGMPGIGKTTSVHCLAHELLGR 63
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
S G + D G + + + Q ++
Sbjct: 64 ---------SYADGVLELNASDDRGIDV------------VRNQIKHFAQKKLHLPPGKH 102
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
KI ++DE +T A A+ +T+E +F A + KI + S+C K+
Sbjct: 103 KIVILDEADSMTAGAQQALRRTMELYSNSTRFAFACNQSNKIIEPLQSQCAILRYSKLSD 162
Query: 561 HDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEM 620
D++ L I+ E++K+ L I A+G MR A++ + + +++ ++
Sbjct: 163 EDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEGDMRQAINNLQSTVA-GHGLVNADNVFKI 221
Query: 621 L 621
+
Sbjct: 222 V 222
>d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 227
Score = 116 bits (290), Expect = 1e-29
Identities = 50/247 (20%), Positives = 99/247 (40%), Gaps = 31/247 (12%)
Query: 381 LARKYRPSNFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
KYRP + + GQN + ++ +D+ +L H LF G G GKT+ LA+ +
Sbjct: 4 WVEKYRPETLDEVYGQNEVITTVRKFVDEGKLPH-LLFYGPPGTGKTSTIVALAREIYG- 61
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA-- 498
+E++A+ RGI+ + ++
Sbjct: 62 -----------------------KNYSNMVLELNASDDRGIDVVRNQIKDFASTRQIFSK 98
Query: 499 RYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKM 558
+K+ ++DE +T+ A NA+ + +E K +F + K+ +LS+C +F + +
Sbjct: 99 GFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLANYAHKLTPALLSQCTRFRFQPL 158
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS----EKITL 614
I + +L E +K +A + + G MR L++ ++I+
Sbjct: 159 PQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVLNVLQSCKATLDNPDEDEISD 218
Query: 615 NSMQEML 621
+ + E
Sbjct: 219 DVIYECC 225
>d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase
III, N-domain {Escherichia coli [TaxId: 562]}
Length = 207
Score = 111 bits (277), Expect = 4e-28
Identities = 50/205 (24%), Positives = 80/205 (39%), Gaps = 7/205 (3%)
Query: 396 QNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGK 455
+ L+ + R HHA L G+G + L++ L C G+
Sbjct: 7 LRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRG-- 64
Query: 456 CSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA 515
C + + + +T G++ + ++ E+ K+ + + +LT A
Sbjct: 65 CQLMQAGTHPDYYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLTDAA 124
Query: 516 FNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKEN 575
NA+LKTLEEPP F LAT EP+++ T+ SRC L V L
Sbjct: 125 ANALLKTLEEPPAETWFFLATREPERLLATLRSRCRLHYLAPPPEQYAVTWL-----SRE 179
Query: 576 IKFETSALNLIATGAQGSMRDALSL 600
+ AL + GS AL+L
Sbjct: 180 VTMSQDALLAALRLSAGSPGAALAL 204
>d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB
{Thermus thermophilus [TaxId: 274]}
Length = 239
Score = 110 bits (275), Expect = 2e-27
Identities = 49/251 (19%), Positives = 91/251 (36%), Gaps = 29/251 (11%)
Query: 386 RPSNFNTLIGQNHISKSLINALDKKRLH----HAYLFTGTRGVGKTTISRILAKCLNCIG 441
RP + IGQ + + L L+ + L G G+GKTT++ ++A L
Sbjct: 4 RPKTLDEYIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGV-N 62
Query: 442 IDGNGGITSQPCGKCSVCVK--IDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINAR 499
+ G + G + + ++ G + E+ S + + +E
Sbjct: 63 LRVTSGPAIEKPGDLAAILANSLEEGDILFIDEIHRLSRQAEEHLYPAMED--------- 113
Query: 500 YKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLS-RCIQFNLKKM 558
+V+D V A +T+ I ATT P I +LS I +L+
Sbjct: 114 ---FVMDIVIGQGPAA-----RTIRLELPRFTLIGATTRPGLITAPLLSRFGIVEHLEYY 165
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSS----EKITL 614
++ + ++ A I ++G+MR A L + +++ E IT
Sbjct: 166 TPEELAQGVMRDARLLGVRITEEAALEIGRRSRGTMRVAKRLFRRVRDFAQVAGEEVITR 225
Query: 615 NSMQEMLSIID 625
E L+ +
Sbjct: 226 ERALEALAALG 236
>d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III,
N-domain {Thermotoga maritima [TaxId: 2336]}
Length = 198
Score = 105 bits (264), Expect = 2e-26
Identities = 40/214 (18%), Positives = 74/214 (34%), Gaps = 37/214 (17%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
++L ++K L G +S L + +
Sbjct: 4 ETLKRIIEKSEGIS-ILINGEDLSYPREVSLELPEYVE---------------------- 40
Query: 461 KIDNGCFMDYIEMDAAS-TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAM 519
D +E+D GI+++ + + Y+P K ++ + +T A NA
Sbjct: 41 -KFPPKASDVLEIDPEGENIGIDDIRTIKDFLNYSPELYTRKYVIVHDCERMTQQAANAF 99
Query: 520 LKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLK---------KMLHHDIVNNLCYI 570
LK LEEPP+Y +L T + T+ SR + + K D+ L +
Sbjct: 100 LKALEEPPEYAVIVLNTRRWHYLLPTIKSRVFRVVVNVPKEFRDLVKEKIGDLWEELPLL 159
Query: 571 LNKENIKFETSALNLIATGAQGSMRDALSLTDQA 604
+ + K A L A G + ++L + +
Sbjct: 160 --ERDFKTALEAYKLGAEKLSG-LMESLKVLETE 190
>d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal
domain {Aeropyrum pernix [TaxId: 56636]}
Length = 287
Score = 103 bits (256), Expect = 1e-24
Identities = 39/278 (14%), Positives = 81/278 (29%), Gaps = 35/278 (12%)
Query: 380 VLARKYRPSNFNTLIGQ-----NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILA 434
V Y P G+ L++ ++ Y G G+GKTT+++
Sbjct: 8 VFDENYIPPELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTV 67
Query: 435 KCLNCIGIDGNGGITSQPCGKCSVC------VKIDNGCFMDYIEMDAASTRGINEMAQLL 488
K ++ + + I A + + + L
Sbjct: 68 KRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNL 127
Query: 489 EQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPK-----YIKFILATTEP---- 539
+ + + + + +L+ EE P I F+L ++
Sbjct: 128 YVENHYLLVILDEFQSMLSSPRIAAEDLYTLLRVHEEIPSRDGVNRIGFLLVASDVRALS 187
Query: 540 ---QKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIK--FETSALNLIA------T 588
+KIP + +L ++ L +E L LI+
Sbjct: 188 YMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYGEDK 247
Query: 589 GAQGSMRDALSLTDQAINY----SSEKITLNSMQEMLS 622
G GS R A+ A + ++ + +++ +S
Sbjct: 248 GGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVS 285
>d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 253
Score = 101 bits (252), Expect = 2e-24
Identities = 30/248 (12%), Positives = 85/248 (34%), Gaps = 8/248 (3%)
Query: 384 KYRPSNFNTLIGQNHISKSLINALD--KKRLHHAYLFTGTRGVGKTTISRILAKC-LNCI 440
KY P+N + G L N L + +++ G G G + + +
Sbjct: 7 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKT 66
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
+ + ++ +A + + +N ++
Sbjct: 67 TAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFK--HNEEAQNLNGKH 124
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPI--TVLSRCIQFNLKKM 558
+ ++DEV ++ + + + K ++ + +P C+ ++
Sbjct: 125 FVIIMDEVDGMSGGDRGGVGQLAQFCRKTSTPLILICNERNLPKMRPFDRVCLDIQFRRP 184
Query: 559 LHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQ 618
+ I + L I +E K + + ++ + +G +R ++L I+ +++ I ++
Sbjct: 185 DANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRGDIRQVINLL-STISTTTKTINHENIN 243
Query: 619 EMLSIIDQ 626
E+ ++
Sbjct: 244 EISKAWEK 251
>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas
putida [TaxId: 303]}
Length = 345
Score = 92.6 bits (228), Expect = 2e-20
Identities = 46/349 (13%), Positives = 98/349 (28%), Gaps = 38/349 (10%)
Query: 34 ASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAA 91
+S+N V +A L + YG + +++ + +IF +
Sbjct: 8 SSDNIAGASPEVAQA----LVKHSSGQAGP---YGTDELTAQVKR----KFCEIFERDVE 56
Query: 92 NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151
+G+ AN ++ P I + G S G K
Sbjct: 57 VFLVPTGTAANALCLSAMTPPWGNIYCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKL 116
Query: 152 KIDYKKVEYLAKKNKPKLIIAGASAYSQY---------IDFERFYHIAKNINSYFMVDMA 202
I + K + +Q + E + K+ + +D +
Sbjct: 117 DIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGS 176
Query: 203 HYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGG 260
+A + + A + + G ++ + G
Sbjct: 177 RFANALVSLGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGH 236
Query: 261 PLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDL 320
+ A + + ++ A+ L++ L+ G V GGT+++I+ L
Sbjct: 237 LSSKMRFLSAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRL 296
Query: 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369
+ I L A + + + +R +S TT
Sbjct: 297 DSAMIDA------LLKAGFGFYHD--------RWGPNVVRFVTSFATTA 331
>d1jr3a1 a.80.1.1 (A:243-368) gamma subunit {Escherichia coli
[TaxId: 562]}
Length = 126
Score = 86.3 bits (213), Expect = 2e-20
Identities = 36/117 (30%), Positives = 64/117 (54%), Gaps = 1/117 (0%)
Query: 624 IDQKYLIQILDALAEQDGNLILSIANKIEIYNLSYSIVLKDLSLLLHQISLIQISPEILI 683
+D + +++A+ E +G ++++ N+ + + +L ++ LLH+I+++Q+SP L
Sbjct: 2 LDDDQALSLVEAMVEANGERVMALINEAAARGIEWEALLVEMLGLLHRIAMVQLSPAALG 61
Query: 684 KDSPNY-NEIIQLSKKFNIEQIQLFYQISIHGRNELELAPDEYAGFTMTLLRMLVFQ 739
D + +L++ IQL+YQ + GR EL APD G MTLLR L F
Sbjct: 62 NDMAAIELRMRELARTIPPTDIQLYYQTLLIGRKELPYAPDRRMGVEMTLLRALAFH 118
>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Thermotoga maritima [TaxId: 2336]}
Length = 343
Score = 74.0 bits (180), Expect = 2e-14
Identities = 54/360 (15%), Positives = 107/360 (29%), Gaps = 33/360 (9%)
Query: 34 ASENYT--SLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAA 91
S+ T + + +A A+ G YG I+ +E+ + F EAA
Sbjct: 5 RSDTVTKPTEEMRKA--------MAQAEVGDDVYGEDPTINELER----LAAETFGKEAA 52
Query: 92 NVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKE 151
P SG+ NQ + GD ++ + G M +SG + + +
Sbjct: 53 LFVP-SGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSGVMPHPVPGKNGAMD 111
Query: 152 KIDYKKVEYLAKKNKPKLIIAGASAYSQYIDF-----ERFYHIAKNINSY-FMVDMAHYA 205
D +K + P+ + E I + V +
Sbjct: 112 PDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIAKEHGINVHIDGAR 171
Query: 206 GLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHV 265
A+ PV + L + + +
Sbjct: 172 IFNASIASGVPVKEYAGYADSVMFCLSKGLCAPVGSVVVGDRDFIERARKARKMLGGGMR 231
Query: 266 IAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKI 325
A A + K+ +NA+ L+ L + G + K++++++ N K+
Sbjct: 232 QAGVLAAAGIIALTKMVDRLKEDHENARFLALKLKEIGYSVNPEDVKTNMVILRTDNLKV 291
Query: 326 TGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSE--LEIIKVVLAR 383
L ++ ++ N + IRL + +R E L I + + +
Sbjct: 292 NAHGFIEALRNSGVLAN----------AVSDTEIRLVTHKDVSRNDIEEALNIFEKLFRK 341
>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase
{Leishmania major [TaxId: 5664]}
Length = 340
Score = 70.0 bits (169), Expect = 4e-13
Identities = 40/347 (11%), Positives = 91/347 (26%), Gaps = 35/347 (10%)
Query: 34 ASENYTSL--AVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAEAA 91
++ + +++ + + G YG + + ++ A
Sbjct: 5 VNDYSVGMHPKILDL----MARDNMTQHAG---YGQDSHCAKAAR----LIGELLERPDA 53
Query: 92 NVQP-HSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKK 150
+V G+Q N L P + ++ L G + K + C +
Sbjct: 54 DVHFISGGTQTNLIACSLALRPWEAVIATQLGHISTHETGAIEATGHKVVTAPCPDGKLR 113
Query: 151 EKIDYKKVEYLAKKNKPKLIIAG------ASAYSQYIDFERFYHIAKNINSYFMVDMAHY 204
+ ++ + + E K Y +D A
Sbjct: 114 VADIESALHENRSEHMVIPKLVYISNTTEVGTQYTKQELEDISASCKEHGLYLFLDGARL 173
Query: 205 AGLIAAGEYPNPVPFADFITSTTHKSLRGPRG--GFILMKKKYKKIINSAVFPGIQGGPL 262
A +++ + +T + G G L+ N+ +G +
Sbjct: 174 ASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALM 233
Query: 263 MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322
+ F K A IL L+ GIR+ S+ +
Sbjct: 234 AKGWLLGIQFEVLMKDNLFFELGAHSNKMAAILKAGLEACGIRLAWPSA-SNQLFPI--- 289
Query: 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369
+ + + ++ ++ + +RL +S T
Sbjct: 290 --LENTMIAELNNDFDMY----TVEPLKDGT---CIMRLCTSWATEE 327
>d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum
aerophilum [TaxId: 13773]}
Length = 276
Score = 68.3 bits (165), Expect = 8e-13
Identities = 30/274 (10%), Positives = 65/274 (23%), Gaps = 37/274 (13%)
Query: 380 VLARKYRPSNFNTLIGQNHISKSLINAL-----DKKRLHHAYLFTGTRGVGKTTISRILA 434
V + Y P L + + L L + + G G GKT R L
Sbjct: 8 VFSPSYVP---KRLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLW 64
Query: 435 KCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYA 494
+ I +E LL + +
Sbjct: 65 ELYKD---KTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDEFLALLVE--HL 119
Query: 495 PINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKY----IKFILATTEP---QKIPITVL 547
Y V+D+ L + ++ +E K I ++ + +
Sbjct: 120 RERDLYMFLVLDDAFNLAPDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNLDPSTR 179
Query: 548 SRCIQ--FNLKKMLHHDIVNNLCYILNKENIKF-----------ETSALNLIATGAQGSM 594
+ I + L + + + +G
Sbjct: 180 GIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDA 239
Query: 595 RDALSLTDQAINYS----SEKITLNSMQEMLSII 624
R A+ + ++ + + I +++ +
Sbjct: 240 RLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 273
>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS)
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 364
Score = 69.5 bits (168), Expect = 8e-13
Identities = 51/368 (13%), Positives = 117/368 (31%), Gaps = 22/368 (5%)
Query: 29 NIELIASENYTSLAVMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAIN-----RLK 83
NI+ + + + +A ++ +GY + + +D I+ I+ +L
Sbjct: 4 NIDPLQTGGKLTEEARQA-----LLEWGDGYSVCDFCTTGR-LDEIKTPPIHDFIHNQLP 57
Query: 84 KIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSI 143
K + A V +A AV S+ ++ ++
Sbjct: 58 KFLGCDVARVTN-GAREAKFAVMHSLAKKDAWVVMDENCHYSSYVAAERAGLNIALVPKT 116
Query: 144 CYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMVDMAH 203
Y ++ + KK ++ Y + IAK + Y + + +
Sbjct: 117 DYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPDVKKIAKVCSEYDVPLLVN 176
Query: 204 YAGLIAAGEYPNPVPFADFITSTTHKSLRGP-RGGFILMKKKYKKIINSAVFPGIQGGPL 262
A I ADFI + HKS+ G + MK+++ +I+
Sbjct: 177 GAYAIGRMPVSLKEIGADFIVGSGHKSMAASGPIGVMGMKEEWAEIVLRRSEKYKNKEVE 236
Query: 263 MHVIAAKAVAFKEVLKPDFKIYQ-----KQVVKNAKILSKILDQRGIRIVSGGTKSH-II 316
+ A+ ++ + + + V+ A+ + +++ GI+ + +H ++
Sbjct: 237 LLGCTARGATIITLMASFPHVRERIKRWDEEVEKARRFAAEMEKLGIKQLGDNPHNHDLM 296
Query: 317 LVDLRNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTRGFSEL-E 375
K A+ I KP T +L + ++ +
Sbjct: 297 FFHAEVLYEISKKAKGGRFFLYRELKSRKIHG--IKPGLTRYFKLSTYGLSDEEVDYVLN 354
Query: 376 IIKVVLAR 383
K ++ +
Sbjct: 355 AFKEIIEK 362
>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase
{Escherichia coli [TaxId: 562]}
Length = 401
Score = 59.8 bits (144), Expect = 1e-09
Identities = 68/347 (19%), Positives = 123/347 (35%), Gaps = 28/347 (8%)
Query: 34 ASENYTSLA----VMEAQGTLLTNKYAEGYPGKRYYGGCKFIDLIEKIAINRLKKIFNAE 89
+ NY LA ++ A + + + G R+ G + K +L E
Sbjct: 51 CANNYLGLANHPDLIAAAKAGM-DSHGFGMASVRFICGTQDSH---KELEQKLAAFLGME 106
Query: 90 AANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNK 149
A + S AN +F ++L D I+ +L + G+ L + + Y N
Sbjct: 107 DA-ILYSSCFDANGGLFETLLGAEDAIISDALNHASII-DGVRLCKAKR----YRYANND 160
Query: 150 KEKIDYKKVEYLAKKNKPKLIIAGA--SAYSQYIDFERFYHIAKNINSYFMVDMAHYAGL 207
++++ + E + LI S + + +A ++ MVD +H G
Sbjct: 161 MQELEARLKEAREAGARHVLIATDGVFSMDGVIANLKGVCDLADKYDALVMVDDSHAVGF 220
Query: 208 IAAG-----EYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPL 262
+ EY + + D IT T K+L G GG+ +K+ + + P + L
Sbjct: 221 VGENGRGSHEYCDVMGRVDIITGTLGKALGGASGGYTAARKEVVEWLRQRSRPYLFSNSL 280
Query: 263 MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIVSGGTKSHIILVDLRN 322
I A + + ++ NA+ + + G + G II V L +
Sbjct: 281 APAI-VAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTL--AGADHAIIPVMLGD 337
Query: 323 KKITGKIAESILESANIICNKNSIPNDPEKPYFTSGIRLGSSAITTR 369
+ K A + + I P P+ + IR SA T
Sbjct: 338 AVVAQKFARELQK-EGIYVTGFFYPVVPKG---QARIRTQMSAAHTP 380
>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
{Methanococcus maripaludis [TaxId: 39152]}
Length = 434
Score = 56.8 bits (136), Expect = 1e-08
Identities = 34/290 (11%), Positives = 88/290 (30%), Gaps = 21/290 (7%)
Query: 67 GCKFIDLIEKIAINRLKKIFNAEAAN-VQPHSGSQANQAVFFSV--LNPGDTIMGMSLQE 123
G + + + K P S + + + ++
Sbjct: 107 GASIMYALTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYASH 166
Query: 124 GGHLTHGMMLNMSGKWFNSICYGLNKK---EKIDYKKVEYLAKKNKPKLII-AGASAYSQ 179
+ + M+ + ++ G E I+ + + N+P ++
Sbjct: 167 KSPIKAVSFVGMNMRLVETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRN 226
Query: 180 YIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPF--ADFITSTTHKSLRGPRGG 237
D I +N + +++ A+ E D + S++ K+L P GG
Sbjct: 227 SDDIVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGG 286
Query: 238 FILM--KKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKIL 295
++ ++ K I+ + P+++ + + + K + ++L
Sbjct: 287 GLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELL 346
Query: 296 SKILDQRGIRI----------VSGGTKSHIILVDLRNKKITGKIAESILE 335
+ + + G + +S + I L N ++TG +
Sbjct: 347 NDLSKKTGGKFLDVESPIASCISVNSDPVEIAAKLYNLRVTGPRGIKKTD 396
>d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI
{Rhodobacter capsulatus [TaxId: 1061]}
Length = 333
Score = 56.1 bits (134), Expect = 1e-08
Identities = 23/169 (13%), Positives = 55/169 (32%), Gaps = 3/169 (1%)
Query: 386 RPS-NFNTLIGQNHISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
RP F+ ++GQ + +L+ + L G RG GK+T R LA L I
Sbjct: 1 RPVFPFSAIVGQEDMKLALLLTAVDPGIGG-VLVFGDRGTGKSTAVRALAALLPEIEAVE 59
Query: 445 NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYV 504
++S + + + G++E +++ ++ +
Sbjct: 60 GCPVSSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSE-DRVVGALDIERAISKGEKAF 118
Query: 505 IDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQF 553
+ + + + + + +L + + + I+
Sbjct: 119 EPGLLARANRGYLYIDECNLLEDHIVDLLLDVAQSGENVVERDGLSIRH 167
>d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase
domain {Simian virus 40 [TaxId: 10633]}
Length = 362
Score = 42.7 bits (100), Expect = 2e-04
Identities = 31/237 (13%), Positives = 65/237 (27%), Gaps = 34/237 (14%)
Query: 399 ISKSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV 458
+ L + +LF G GKTT++ L + ++ N
Sbjct: 140 VYDFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLP----------- 188
Query: 459 CVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHH---A 515
+ + ++ ++ P I+ + L + +
Sbjct: 189 ----LDRLNFELGVAIDQFLVVFEDVKGTGGESRDLP-----SGQGINNLDNLRDYLDGS 239
Query: 516 FNAMLKTLEEPPKYIKF--ILATTEPQKIPITVLSR---CIQFNLKKMLHHDIVNNLCYI 570
L+ + F + T +P T+ +R I F K L + ++
Sbjct: 240 VKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYL-KHCLERSEFL 298
Query: 571 LNKENIKFETSALNLIATGAQGSMRDAL-SLTDQAINYSSEKIT-LNSMQEMLSIID 625
L K I+ S + L+ I E++ S+ +
Sbjct: 299 LEKRIIQ---SGIALLLMLIWYRPVAEFAQSIQSRIVEWKERLDKEFSLSVYQKMKF 352
>d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId:
562]}
Length = 171
Score = 40.4 bits (93), Expect = 5e-04
Identities = 17/114 (14%), Positives = 36/114 (31%), Gaps = 5/114 (4%)
Query: 413 HHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIE 472
HH Y+ G G GK+ ++ +A L+ +DG+ + + D
Sbjct: 6 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLDGDFLHPRR---NIEKMASGEPLNDDDRKP 62
Query: 473 MDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEP 526
A M + + ++ + + D + + LK +
Sbjct: 63 WLQALNDAAFAMQRTNKVSLIVCSALKK--HYRDLLREGNPNLSFIYLKGDFDV 114
>d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni
[TaxId: 197]}
Length = 161
Score = 39.9 bits (92), Expect = 5e-04
Identities = 17/55 (30%), Positives = 26/55 (47%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIE 472
F G G GK+T++R LAK L+ + +D + I + K S + F E
Sbjct: 5 FIGFMGSGKSTLARALAKDLDLVFLDSDFLIEQKFNQKVSEIFEQKRENFFREQE 59
>d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli
[TaxId: 562]}
Length = 169
Score = 39.7 bits (91), Expect = 6e-04
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 4/66 (6%)
Query: 408 DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467
+K+ + G G GK+TI R LA+ LN D + I + ++
Sbjct: 1 EKRNI----FLVGPMGAGKSTIGRQLAQQLNMEFYDSDQEIEKRTGADVGWVFDLEGEEG 56
Query: 468 MDYIEM 473
E
Sbjct: 57 FRDREE 62
>d1d2na_ c.37.1.20 (A:) Hexamerization domain of
N-ethylmalemide-sensitive fusion (NSF) protein {Chinese
hamster (Cricetulus griseus) [TaxId: 10029]}
Length = 246
Score = 39.2 bits (90), Expect = 0.002
Identities = 31/254 (12%), Positives = 75/254 (29%), Gaps = 37/254 (14%)
Query: 390 FNTLIGQNHISKSLINAL---------DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCI 440
N +I +++ + + L G GKT ++ +A+ N
Sbjct: 8 MNGIIKWGDPVTRVLDDGELLVQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFP 67
Query: 441 GIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARY 500
I + + C + Y S ++++ +LL+
Sbjct: 68 FIKICSPDKMIGFSETAKCQAMKKIFDDAYKSQL--SCVVVDDIERLLDYVPI------- 118
Query: 501 KIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLH 560
L A +LK + + I T+ + + +H
Sbjct: 119 ----GPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNAFS----TTIH 170
Query: 561 HDIVNNLCYILN--KENIKFETSALNLIATGAQGS-----MRDALSLTDQAINYSSEKIT 613
+ +L + F+ IA +G ++ L L + ++ E
Sbjct: 171 VPNIATGEQLLEALELLGNFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMDPE--- 227
Query: 614 LNSMQEMLSIIDQK 627
+++ L+++ ++
Sbjct: 228 -YRVRKFLALLREE 240
>d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major
[TaxId: 5664]}
Length = 174
Score = 38.1 bits (87), Expect = 0.003
Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 1/96 (1%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
L TGT G GKT+++ ++A L+ G + + + ++ + D
Sbjct: 9 LITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYD-TELDTHIIEEKDEDRL 67
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLT 512
M + + + V +L
Sbjct: 68 LDFMEPIMVSRGNHVVDYHSSELFPERWFHMVVVLH 103
>d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS
kinase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 195
Score = 37.0 bits (84), Expect = 0.007
Identities = 28/192 (14%), Positives = 50/192 (26%), Gaps = 13/192 (6%)
Query: 398 HISKSLINALDKKRLHH---AYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGIT-SQPC 453
H+S++ + R TG G GKTT+S L + L C GI +
Sbjct: 1 HVSRNKRGQVVGTRGGFRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 60
Query: 454 GKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTH 513
G + + + + + I R I E L
Sbjct: 61 GLNKNLGFSPEDREENVRRIAEVAKLFADAGLVCITSFISPYTQDRNNARQIHEGASLPF 120
Query: 514 HAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRC---------IQFNLKKMLHHDIV 564
+ +K + +I + +D V
Sbjct: 121 FEVFVDAPLHVCEQRDVKGLYKKARAGEIKGFTGIDSEYEKPEAPELVLKTDSCDVNDCV 180
Query: 565 NNLCYILNKENI 576
+ +L + +I
Sbjct: 181 QQVVELLQERDI 192
>d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain
{Fungus (Penicillium chrysogenum) [TaxId: 5076]}
Length = 183
Score = 36.6 bits (83), Expect = 0.008
Identities = 17/147 (11%), Positives = 28/147 (19%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
TG GK I+R L LN G + A
Sbjct: 10 FLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHELSSELGFTREDRHTNIQRIA 69
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
A + + D V + LE + K +
Sbjct: 70 FVATELTRAGAAVIAAPIAPYEESRKFARDAVSQAGSFFLVHVATPLEHCEQSDKRGIYA 129
Query: 537 TEPQKIPITVLSRCIQFNLKKMLHHDI 563
+ + + +
Sbjct: 130 AARRGEIKGFTGVDDPYETPEKADLVV 156
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 37.0 bits (85), Expect = 0.012
Identities = 44/260 (16%), Positives = 89/260 (34%), Gaps = 27/260 (10%)
Query: 98 GSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKK 157
GSQA +F ++L+PGD ++ + +++ M+ +G + + D ++
Sbjct: 100 GSQALFNLFQAILDPGDEVI---VLSPYWVSYPEMVRFAGGVVVEVETLPEEGFVPDPER 156
Query: 158 VEYLAKKNKPKLIIAGAS----AYSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEY 213
V L++ + A E +A + Y + D Y L+ GE+
Sbjct: 157 VRRAITPRTKALVVNSPNNPTGAVYPKEVLEALARLAVEHDFYLVSD-EIYEHLLYEGEH 215
Query: 214 PNPVPFAD---FITSTTHKSLR--GPRGGFI-----LMKKKYKKIINSAVFPGIQGGPLM 263
+P A + K+ G R G+ ++K S P
Sbjct: 216 FSPGRVAPEHTLTVNGAAKAFAMTGWRIGYACGPKEVIKAMASVSRQSTTSPDTIAQWAT 275
Query: 264 HVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV--SGGTKSHIILVDLR 321
A + ++ + Y+++ + L+ + G++ V SG +L+D
Sbjct: 276 LEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL----GLKAVRPSGA---FYVLMDTS 328
Query: 322 NKKITGKIAESILESANIIC 341
A L A +
Sbjct: 329 PIAPDEVRAAERLLEAGVAV 348
>d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase
{Streptomyces venezuelae [TaxId: 54571]}
Length = 178
Score = 35.8 bits (81), Expect = 0.015
Identities = 17/122 (13%), Positives = 29/122 (23%), Gaps = 5/122 (4%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
+ G GK+ I R L L + G+ S + G D +
Sbjct: 7 ILNGGSSAGKSGIVRCLQSVLPEPWLA--FGVDSLIEAMPLKMQSAEGGIEFDADGGVSI 64
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
E AR +I + L A ++ + +
Sbjct: 65 GPEFRALEGAWAEG---VVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLWVGVRC 121
Query: 537 TE 538
Sbjct: 122 DG 123
>d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 165
Score = 35.4 bits (80), Expect = 0.019
Identities = 12/26 (46%), Positives = 14/26 (53%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGID 443
G G GK+TI R LAK L +D
Sbjct: 6 LVGLPGSGKSTIGRRLAKALGVGLLD 31
>d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi
[TaxId: 556]}
Length = 170
Score = 35.3 bits (80), Expect = 0.022
Identities = 15/98 (15%), Positives = 38/98 (38%), Gaps = 2/98 (2%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477
G RG G TT+ R LA+ L +D + I Q +V + + + ++ +
Sbjct: 7 MVGARGCGMTTVGRELARALGYEFVDTD--IFMQHTSGMTVADVVAAEGWPGFRRRESEA 64
Query: 478 TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHA 515
+ + +++ + + + ++ ++ A
Sbjct: 65 LQAVATPNRVVATGGGMVLLEQNRQFMRAHGTVVYLFA 102
>d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3'
phosphatase, C-terminal domain {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 172
Score = 35.2 bits (80), Expect = 0.022
Identities = 15/121 (12%), Positives = 33/121 (27%), Gaps = 11/121 (9%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSV-CVK-----IDNGCFMDY 470
+ G G GK+T + + ++ + + Q C ++ + + D
Sbjct: 18 VAVGFPGAGKSTFIQEHLVSAGYVHVNRDTLGSWQRCVSSCQAALRQGKRVVIDNTNPDV 77
Query: 471 IEMDAASTRGINEMAQLLEQTIYAPI-----NARYKIYVIDEVHMLTHHAFNAMLKTLEE 525
+ A I N R++ ++ + K E
Sbjct: 78 PSRARYIQCAKDAGVPCRCFNFCATIEQARHNNRFREMTDPSHAPVSDMVMFSYRKQFEP 137
Query: 526 P 526
P
Sbjct: 138 P 138
>d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 181
Score = 34.1 bits (77), Expect = 0.066
Identities = 25/158 (15%), Positives = 47/158 (29%), Gaps = 14/158 (8%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
L G G GK T + LA+ L I + V+ +DA
Sbjct: 4 LLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIEEGTKLGVEAKR-------YLDAG 56
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
+ +L++ + P A I + A + ML+ +
Sbjct: 57 DLVPSDLTNELVDDRLNNPDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEF--- 113
Query: 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE 574
++ VL ++ + D++ N + E
Sbjct: 114 ----RVSEEVLLERLKGRGRADDTDDVILNRMKVYRDE 147
>d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens),
isoenzyme 6 [TaxId: 9606]}
Length = 173
Score = 33.8 bits (76), Expect = 0.077
Identities = 14/56 (25%), Positives = 19/56 (33%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIE 472
L TGT GVGKTT+ + LA I+ + D +
Sbjct: 8 LLTGTPGVGKTTLGKELASKSGLKYINVGDLAREEQLYDGYDEEYDCPILDEDRVV 63
>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas
vaginalis, MGL2 [TaxId: 5722]}
Length = 331
Score = 34.4 bits (78), Expect = 0.085
Identities = 24/186 (12%), Positives = 56/186 (30%), Gaps = 11/186 (5%)
Query: 80 NRLKKIFNAEAANVQPHSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKW 139
++ K+ +AEA SG A A ++ L GD ++ G TH + + K+
Sbjct: 5 GKIAKLEHAEACAATA-SGMGAIAASVWTFLKAGDHLISDDCLYGC--THALFEHQLRKF 61
Query: 140 FNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGASAYSQYIDFERFYHIAKNINSYFMV 199
+ + K ++ + + D + K + +V
Sbjct: 62 GVEVDFIDMAVPGNIEKHLKPNTRIVYFETPANPTLKVIDIEDAVKQAR--KQKDILVIV 119
Query: 200 DMAHYAGLIAAGEYPNPVPFADFITSTTHKSLRGP--RGGFILMKKKYKKIINSAVFPGI 257
D + ++ D + + K + G ++ + +
Sbjct: 120 DNTFASPIL----TNPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKD 175
Query: 258 QGGPLM 263
G ++
Sbjct: 176 ITGAII 181
>d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015
{Agrobacterium tumefaciens [TaxId: 358]}
Length = 176
Score = 33.4 bits (75), Expect = 0.11
Identities = 9/30 (30%), Positives = 13/30 (43%), Gaps = 2/30 (6%)
Query: 417 LFTGTRGVGKTTISRILAKCLN--CIGIDG 444
L +G G GK+TI+ LA +
Sbjct: 8 LLSGHPGSGKSTIAEALANLPGVPKVHFHS 37
>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium
lapideum [TaxId: 32060]}
Length = 388
Score = 34.0 bits (77), Expect = 0.11
Identities = 30/295 (10%), Positives = 81/295 (27%), Gaps = 20/295 (6%)
Query: 63 RYYGGCKFIDLIEKIAINRLKK-IFNAEAANVQPHSGS-QANQAVFFSVLNPGDTIMGMS 120
RY L E IA + A N+ +G Q+ + +++ PGD ++
Sbjct: 62 RYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAMIEPGDEVI--- 118
Query: 121 LQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDYKKVEYLAKKNKPKLIIAGAS----A 176
+ +++ M+ ++ + + + K+ +++ L+ S
Sbjct: 119 IPAPFWVSYPEMVKLAEGTPVILPTTVETQFKVSPEQIRQAITPKTKLLVFNTPSNPTGM 178
Query: 177 YSQYIDFERFYHIAKNINSYFMVDMAHYAGLIAAGEYPNPVPFADFITSTTHK------- 229
+ +A + + D + L ++ + + +
Sbjct: 179 VYTPDEVRAIAQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKT 238
Query: 230 -SLRGPRGGFILMKKKYKKIINSAVFPGIQGGPLMHVIAAKAVAFKEVLKPDFKIYQKQV 288
++ G R GF+ K A A E + +
Sbjct: 239 YAMTGWRVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAI--AAYENSQDCVQEMLAAF 296
Query: 289 VKNAKILSKILDQRGIRIVSGGTKSHIILVDLRNKKITG-KIAESILESANIICN 342
+ + + L+ + + + + +L+ +
Sbjct: 297 AERRRYMLDALNAMPGLECPKPDGAFYMFPSIAKTGRSSLDFCSELLDQHQVATV 351
>d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's
yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 180
Score = 33.0 bits (74), Expect = 0.14
Identities = 11/103 (10%), Positives = 25/103 (24%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
+ G G GK T + L + + + + SQ + ++ + D
Sbjct: 6 VLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIAKGTQLGLEAKKIMDQGGLVSDDI 65
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAM 519
I + I + + +
Sbjct: 66 MVNMIKDELTNNPACKNGFILDGFPRTIPQAEKLDQMLKEQGT 108
>d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus
thermophilus [TaxId: 274]}
Length = 315
Score = 33.1 bits (75), Expect = 0.18
Identities = 31/141 (21%), Positives = 55/141 (39%), Gaps = 22/141 (15%)
Query: 393 LIGQNHISKSLINAL--------DKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDG 444
++GQ+ +++ +A+ D R ++LF G GVGKT +++ LA L
Sbjct: 25 VVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 84
Query: 445 NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYV 504
++ K +V + G E QL E P Y + +
Sbjct: 85 IRIDMTEYMEKHAV----------SRLIGAPPGYVGYEEGGQLTEAVRRRP----YSVIL 130
Query: 505 IDEVHMLTHHAFNAMLKTLEE 525
DE+ FN +L+ L++
Sbjct: 131 FDEIEKAHPDVFNILLQILDD 151
>d1bifa1 c.37.1.7 (A:37-249)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase,
kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 213
Score = 32.6 bits (73), Expect = 0.19
Identities = 11/27 (40%), Positives = 15/27 (55%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID 443
+ G GKT IS+ L + LN IG+
Sbjct: 6 VMVGLPARGKTYISKKLTRYLNFIGVP 32
>d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 443
Score = 33.2 bits (75), Expect = 0.21
Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 13/58 (22%)
Query: 394 IGQNHISKSLINALDK--KRLHHA-----------YLFTGTRGVGKTTISRILAKCLN 438
IGQ +++ AL +R+ L G GVGKT I+R LAK N
Sbjct: 17 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLAN 74
>d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta,
toxin zeta subunit {Streptococcus pyogenes [TaxId:
1314]}
Length = 273
Score = 32.2 bits (72), Expect = 0.31
Identities = 29/244 (11%), Positives = 68/244 (27%), Gaps = 5/244 (2%)
Query: 389 NFNTLIGQNHISKSLINALDKKRLHH---AYLFTGTRGVGKTTISRILAKCLNCIGIDGN 445
NF +N ++ +L + K+ A+L G G GKT++ + + I +
Sbjct: 5 NFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 64
Query: 446 GGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVI 505
Q VK+ + ++ + + V
Sbjct: 65 NDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTDVP 124
Query: 506 DEVHMLTHHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVL--SRCIQFNLKKMLHHDI 563
+ + + PK ++ + + +R ++ ++
Sbjct: 125 IQTATMLQAKGYETKMYVMAVPKINSYLGTIERYETMYADDPMTARATPKQAHDIVVKNL 184
Query: 564 VNNLCYILNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSI 623
NL + ++S + + K++ +Q L
Sbjct: 185 PTNLETLHKTGLFSDIRLYNREGVKLYSSLETPSISPKETLEKELNRKVSGKEIQPTLER 244
Query: 624 IDQK 627
I+QK
Sbjct: 245 IEQK 248
>d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium
tuberculosis [TaxId: 1773]}
Length = 208
Score = 32.0 bits (71), Expect = 0.32
Identities = 15/110 (13%), Positives = 27/110 (24%), Gaps = 5/110 (4%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGC---FMDYIEMD 474
G G GK T+ L+ G + P SV I +
Sbjct: 5 IEGVDGAGKRTLVEKLSGAFRAAGRSVA--TLAFPRYGQSVAADIAAEALHGEHGDLASS 62
Query: 475 AASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLE 524
+ + + + + Y + ++D A L
Sbjct: 63 VYAMATLFALDRAGAVHTIQGLCRGYDVVILDRYVASNAAYSAARLHENA 112
>d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus
voltae [TaxId: 2188]}
Length = 190
Score = 31.9 bits (71), Expect = 0.39
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID 443
+ TG GVG TT S++ L G++
Sbjct: 5 VVTGVPGVGSTTSSQLAMDNLRKEGVN 31
>d1ihua2 c.37.1.10 (A:308-586) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 279
Score = 31.9 bits (71), Expect = 0.41
Identities = 11/37 (29%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
+L++ + + H + G GVGKTT++ +A L
Sbjct: 9 SALVDDIARNE-HGLIMLMGKGGVGKTTMAAAIAVRL 44
>d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus
halodurans [TaxId: 86665]}
Length = 176
Score = 31.5 bits (70), Expect = 0.42
Identities = 14/58 (24%), Positives = 22/58 (37%)
Query: 416 YLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEM 473
Y+ TG GVGK+T + LA L+ I G + D + + +
Sbjct: 5 YIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINHMVVGGYRPPWESDELLALTWKNI 62
>d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR,
ribosylnicotinamide kinase domain {Haemophilus
influenzae [TaxId: 727]}
Length = 192
Score = 31.6 bits (70), Expect = 0.49
Identities = 6/27 (22%), Positives = 8/27 (29%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID 443
G GK+ + LA N
Sbjct: 11 AILGGESSGKSVLVNKLAAVFNTTSAW 37
>d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus
acidocaldarius [TaxId: 2285]}
Length = 194
Score = 31.5 bits (70), Expect = 0.50
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID 443
+ TG GVGK+T+ + + L+ GI+
Sbjct: 5 IVTGIPGVGKSTVLAKVKEILDNQGIN 31
>d1iqca2 a.3.1.5 (A:151-308) Di-heme cytochrome c peroxidase
{Nitrosomonas europaea [TaxId: 915]}
Length = 158
Score = 30.8 bits (69), Expect = 0.58
Identities = 7/25 (28%), Positives = 13/25 (52%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
+QA+ QLN ++EV ++
Sbjct: 102 EQAVETMGRIQLNREFNKDEVSKIV 126
>d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea
mays) [TaxId: 4577]}
Length = 189
Score = 31.0 bits (69), Expect = 0.58
Identities = 7/105 (6%), Positives = 23/105 (21%), Gaps = 5/105 (4%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
+ +G GK T ++ I + ++ + +++E
Sbjct: 7 MISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAAGSENGKRA-----KEFMEKGQL 61
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLK 521
I + + + ++
Sbjct: 62 VPDEIVVNMVKERLRQPDAQENGWLLDGYPRSYSQAMALETLEIR 106
>d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 214
Score = 31.4 bits (70), Expect = 0.59
Identities = 18/123 (14%), Positives = 32/123 (26%), Gaps = 5/123 (4%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477
G GKTT IL K L N + P + I+ D ++ +
Sbjct: 8 IEGLDRTGKTTQCNILYKKLQ-----PNCKLLKFPERSTRIGGLINEYLTDDSFQLSDQA 62
Query: 478 TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATT 537
+ + K V+D A + ++ +
Sbjct: 63 IHLLFSANRWEIVDKIKKDLLEGKNIVMDRYVYSGVAYSAAKGTNGMDLDWCLQPDVGLL 122
Query: 538 EPQ 540
+P
Sbjct: 123 KPD 125
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 30.4 bits (67), Expect = 0.72
Identities = 15/124 (12%), Positives = 31/124 (25%), Gaps = 8/124 (6%)
Query: 423 GVGKTTIS-RILAKCLNCIGIDGNGGITSQPCG----KCSVCVKIDNGCFMDYIEMDAAS 477
G GKT + + ++ + + +
Sbjct: 17 GAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGLDVKFHTQAFSAHGSGRE 76
Query: 478 TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNA--MLKTLEEPPKYIKFILA 535
A L + + +++ ++DE H L + A + IL
Sbjct: 77 VIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANE-SATILM 135
Query: 536 TTEP 539
T P
Sbjct: 136 TATP 139
>d1ihua1 c.37.1.10 (A:1-296) Arsenite-translocating ATPase ArsA
{Escherichia coli [TaxId: 562]}
Length = 296
Score = 31.1 bits (69), Expect = 0.78
Identities = 12/21 (57%), Positives = 13/21 (61%)
Query: 417 LFTGTRGVGKTTISRILAKCL 437
FTG GVGKT+IS A L
Sbjct: 12 FFTGKGGVGKTSISCATAIRL 32
>d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 182
Score = 30.3 bits (67), Expect = 1.0
Identities = 13/138 (9%), Positives = 31/138 (22%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
+ G G GK T + + I + + ++ + D
Sbjct: 4 VLMGLPGAGKGTQAEKIVAAYGIPHISTGDMFRAAMKEGTPLGLQAKQYMDRGDLVPDEV 63
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
+ + E + ++ + E L + ++
Sbjct: 64 TIGIVRERLSKDDCQNGFLLDGFPRTVAQAEALETMLADIGRKLDYVIHIDVRQDVLMER 123
Query: 537 TEPQKIPITVLSRCIQFN 554
TV +R
Sbjct: 124 LTADDNEATVANRLEVNM 141
>d2ax3a1 c.72.1.4 (A:212-489) Hypothetical protein TM0922, C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 278
Score = 30.7 bits (68), Expect = 1.0
Identities = 22/122 (18%), Positives = 42/122 (34%), Gaps = 7/122 (5%)
Query: 999 HHIFLEPEGIVINEYYPNGISTSLPFEAQIELVQSIDGMKNANIIRPGYAIEYDYFNPCN 1058
+ V+ E + T P E + +++ +K + +A E +
Sbjct: 132 ADAINVLDTSVLKERKSPAVLTPHPGEMARLVKKTVGDVKYNYELAEEFAKEN---DCVL 188
Query: 1059 LKSSLETKQIHGLFFAGQINGTTGYEEAASQGLLAGLNAALFSQDRDPWIPGRDQAYLGV 1118
+ S T G I G TG + S +L G+ A +Q P + + + V
Sbjct: 189 VLKSATTIVTDGEKTLFNITGNTGLSKGGSGDVLTGMIAGFIAQGLSPL----EASTVSV 244
Query: 1119 LV 1120
+
Sbjct: 245 YL 246
>d1byia_ c.37.1.10 (A:) Dethiobiotin synthetase {Escherichia coli
[TaxId: 562]}
Length = 224
Score = 30.0 bits (66), Expect = 1.4
Identities = 11/28 (39%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 416 YLFTGTR-GVGKTTISRILAKCLNCIGI 442
Y TGT VGKT S L + G
Sbjct: 4 YFVTGTDTEVGKTVASCALLQAAKAAGY 31
>d1eb7a2 a.3.1.5 (A:165-323) Di-heme cytochrome c peroxidase
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 159
Score = 29.3 bits (65), Expect = 1.7
Identities = 6/25 (24%), Positives = 13/25 (52%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
K A+ QL L ++V++++
Sbjct: 105 KDAVAIMGNAQLGKQLAPDDVENIV 129
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 29.9 bits (66), Expect = 1.8
Identities = 11/43 (25%), Positives = 22/43 (51%), Gaps = 6/43 (13%)
Query: 1062 SLETKQIHGLFFAGQ---INGTTG---YEEAASQGLLAGLNAA 1098
++E+ Q+ GL+F G+ + G G ++ A S L+ +
Sbjct: 209 TMESNQVSGLYFIGEVLDVTGWLGGYNFQWAWSSAYACALSIS 251
>d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId:
9606]}
Length = 194
Score = 29.6 bits (65), Expect = 1.9
Identities = 13/158 (8%), Positives = 37/158 (23%), Gaps = 6/158 (3%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
G G GK T + + + G + + +
Sbjct: 5 FVLGGPGAGKGTQCARIVEKYGYTHLS-AGELLRDERKNPDSQY-----GELIEKYIKEG 58
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
+ LL++ + + A + + + + F+L
Sbjct: 59 KIVPVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFF 118
Query: 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE 574
+I I + + + + + + +
Sbjct: 119 DCNNEICIERCLERGKSSGRSDDNRESLEKRIQTYLQS 156
>d1cp2a_ c.37.1.10 (A:) Nitrogenase iron protein {Clostridium
pasteurianum [TaxId: 1501]}
Length = 269
Score = 29.9 bits (66), Expect = 1.9
Identities = 16/184 (8%), Positives = 49/184 (26%), Gaps = 9/184 (4%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIG-----IDGNGGITSQPCGKCSVCVKIDNGCFMDYIE 472
G G+GK+T ++ L L+ +G + + S + + +D +
Sbjct: 6 IYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDPKADSTRL----LLGGLAQKSVLDTLR 61
Query: 473 MDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKF 532
+ + + + ++T L + Y+ +
Sbjct: 62 EEGEDVELDSILKEGYGGIRCVESGGPEPGVGCAGRGIITSINMLEQLGAYTDDLDYVFY 121
Query: 533 ILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQG 592
+ + + + +++ + I+ + + G
Sbjct: 122 DVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIIC 181
Query: 593 SMRD 596
+ R
Sbjct: 182 NSRK 185
>d1uhga_ e.1.1.1 (A:) Ovalbumin {Hen (Gallus gallus) [TaxId: 9031]}
Length = 385
Score = 30.2 bits (67), Expect = 2.0
Identities = 12/75 (16%), Positives = 28/75 (37%), Gaps = 9/75 (12%)
Query: 581 SALNLIATGAQGS----MRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLIQILDAL 636
SAL ++ GA+ S + + S + + + L IL+ +
Sbjct: 36 SALAMVYLGAKDSTRTQINKVVRFDKLPGFGDSIEAQCGTSVNV-----HSSLRDILNQI 90
Query: 637 AEQDGNLILSIANKI 651
+ + S+A+++
Sbjct: 91 TKPNDVYSFSLASRL 105
>d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]}
Length = 225
Score = 29.6 bits (65), Expect = 2.0
Identities = 25/221 (11%), Positives = 57/221 (25%), Gaps = 22/221 (9%)
Query: 420 GTRGVGKTTISRILAKCLNCIGIDG------------NGGITSQPCGKCSVCVKIDNGCF 467
G G GK T+ + +A+ L +D + + + F
Sbjct: 10 GPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRF 69
Query: 468 MDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP 527
+ G + ++ Q + + + E + AF + P
Sbjct: 70 VSTNGNLEVILEGEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFREL------PG 123
Query: 528 KYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIA 587
T + + + + +N E + E +
Sbjct: 124 LIADGRDMGTVVFPDAPVKIFLDASSEERAHRRMLQLQVKGFSVNFERLLAEIKERDDRD 183
Query: 588 TGAQGSMRDALSLTDQAINYSSEKITLNSM-QEMLSIIDQK 627
+ L A+ S +++ + ++ L QK
Sbjct: 184 RNRAVA---PLVPAADALVLDSTTLSIEQVIEKALQYARQK 221
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 29.2 bits (64), Expect = 2.4
Identities = 22/169 (13%), Positives = 45/169 (26%), Gaps = 25/169 (14%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
+ G VGKT ++ + + I++
Sbjct: 6 IVIGDSNVGKTCLTYRFCA---------GRFPDRTEATIGVDFRERAVDIDGERIKIQLW 56
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
T G + + Q Y ++A +Y + + P +I+
Sbjct: 57 DTAGQERFRKSMVQHYYRNVHAVVFVYDMTNMASFHSL------------PAWIEECKQH 104
Query: 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKF-ETSALN 584
IP ++ + D+ + ++ ETSA N
Sbjct: 105 LLANDIPRILVGNKCDLRSAIQVPTDLAQKFA---DTHSMPLFETSAKN 150
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 29.1 bits (64), Expect = 2.5
Identities = 22/169 (13%), Positives = 48/169 (28%), Gaps = 27/169 (15%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
+ G+ GVGK+ ++ + + + +++D
Sbjct: 8 IMVGSGGVGKSALTLQFMY----------DEFVEDYEPTKADSYRKKVVLDGEEVQIDIL 57
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
T G + A + + + V M + A + + IL
Sbjct: 58 DTAGQEDYAAI---RDNYFRSGEGFLCVFSITEMESFAAT----------ADFREQILRV 104
Query: 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKF-ETSALN 584
E + +P ++ V ++ N+ + ETSA
Sbjct: 105 KEDENVPFLLVGNKSDLE---DKRQVSVEEAKNRADQWNVNYVETSAKT 150
>d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId:
1313]}
Length = 223
Score = 29.2 bits (64), Expect = 2.7
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 420 GTRGVGKTTISRILAKCLNCIGID 443
G GK+T+++I+AK +D
Sbjct: 10 GPASSGKSTVAKIIAKDFGFTYLD 33
>d2jfga3 c.72.2.1 (A:94-297)
UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
{Escherichia coli [TaxId: 562]}
Length = 204
Score = 29.3 bits (64), Expect = 2.7
Identities = 17/174 (9%), Positives = 47/174 (27%), Gaps = 8/174 (4%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGIDG--NGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
TG+ GK+T++ ++ + G++ G I ++ + +
Sbjct: 17 TGS--NGKSTVTTLVGEMAKAAGVNVGVGGNIGLPALMLLDDECELYVLELSSFQLETTS 74
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
S + + + + Y + NA + + I
Sbjct: 75 SLQAVAATILNVTEDHMDR----YPFGLQQYRAAKLRIYENAKVCVVNADDALTMPIRGA 130
Query: 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGA 590
E + + + + + + + + + N +A A
Sbjct: 131 DERCVSFGVNMGDYHLNHQQGETWLRVKGEKVLNVKEMKLSGQHNYTNALAALA 184
>d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal
recognition particle receptor FtsY {Thermus aquaticus
[TaxId: 271]}
Length = 207
Score = 28.9 bits (64), Expect = 2.8
Identities = 22/148 (14%), Positives = 36/148 (24%), Gaps = 13/148 (8%)
Query: 417 LFTGTRGVGKTTISRILAK---------CLNCIGIDGNGGITSQPCGKCSVCVKIDNGCF 467
L G GVGKTT L + G T + + +
Sbjct: 10 LVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPV----I 65
Query: 468 MDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP 527
D A+ A ++ +++ + A+ K E P
Sbjct: 66 QGPEGTDPAALAYDAVQAMKARGYDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEP 125
Query: 528 KYIKFILATTEPQKIPITVLSRCIQFNL 555
K + +L Q L
Sbjct: 126 KEVWLVLDAVTGQNGLEQAKKFHEAVGL 153
>d1j6ua3 c.72.2.1 (A:89-295) UDP-N-acetylmuramate-alanine ligase
MurC {Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 28.9 bits (63), Expect = 3.0
Identities = 19/165 (11%), Positives = 39/165 (23%), Gaps = 9/165 (5%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGID---GNGGITSQPCGKCSVC----VKIDNGCFMDYI 471
TGT GKTT + ++A L + GGI V + ++
Sbjct: 20 TGT--DGKTTTTAMVAHVLKHLRKSPTVFLGGIMDSLEHGNYEKGNGPVVYELDESEEFF 77
Query: 472 EMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIK 531
+ + I + + + + F T
Sbjct: 78 SEFSPNYLIITNARGDHLENYGNSLTRYRSAFEKISRNTDLVVTFAEDELTSHLGDVTFG 137
Query: 532 FILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENI 576
T + + + + ++ + N N
Sbjct: 138 VKKGTYTLEMRSASRAEQKAMVEKNGKRYLELKLKVPGFHNVLNA 182
>d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum
[TaxId: 44689]}
Length = 194
Score = 29.2 bits (64), Expect = 3.0
Identities = 6/62 (9%), Positives = 16/62 (25%), Gaps = 5/62 (8%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID-----GNGGITSQPCGKCSVCVKIDNGCFMDYI 471
G G GK T + + + + + G+ + + +
Sbjct: 10 FVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQSGSKDGEMIATMIKNGEIVPSIV 69
Query: 472 EM 473
+
Sbjct: 70 TV 71
>d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 241
Score = 29.2 bits (64), Expect = 3.0
Identities = 17/172 (9%), Positives = 43/172 (25%), Gaps = 12/172 (6%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGID----GNGGITSQPCGKCSVCVKIDN---GCFMDY 470
G VGK+T ++L K + + + +
Sbjct: 7 IEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLDMMYRE 66
Query: 471 IEMDAASTRG---INEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPP 527
+ + + ++ + LE + AR + + + + F L
Sbjct: 67 PARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLS 126
Query: 528 KYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFE 579
I + + + I + L L + + + +
Sbjct: 127 DIEWHI--YQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQRAREEEK 176
>d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide
biosynthesis protein MobB {Escherichia coli [TaxId:
562]}
Length = 170
Score = 28.8 bits (63), Expect = 3.2
Identities = 10/25 (40%), Positives = 12/25 (48%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGI 442
F G GKTT+ + L L GI
Sbjct: 7 FAAWSGTGKTTLLKKLIPALCARGI 31
>d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]}
Length = 309
Score = 29.0 bits (64), Expect = 3.6
Identities = 25/125 (20%), Positives = 41/125 (32%), Gaps = 28/125 (22%)
Query: 394 IGQNHISKSLINALDK--KRLHHA-----------YLFTGTRGVGKTTISRILAKCLNC- 439
IGQ +++ AL +R+ L G GVGKT I+R LAK N
Sbjct: 17 IGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAP 76
Query: 440 --------------IGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEMA 485
+G + + I ++ + E+D +G A
Sbjct: 77 FIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGA 136
Query: 486 QLLEQ 490
+ +
Sbjct: 137 DVSRE 141
>d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain
{Bacteriophage T4 [TaxId: 10665]}
Length = 152
Score = 28.5 bits (62), Expect = 3.7
Identities = 14/134 (10%), Positives = 27/134 (20%)
Query: 416 YLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDA 475
L G G GK+T +R +
Sbjct: 5 ILTIGCPGSGKSTWAREFIAKNPGFYNINRDDYRQSIMAHEERDEYKYTKKKEGIVTGMQ 64
Query: 476 ASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILA 535
T + + + + + K + P + +
Sbjct: 65 FDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEHKVFDVPWTELVKRNS 124
Query: 536 TTEPQKIPITVLSR 549
+ +PI VL
Sbjct: 125 KRGTKAVPIDVLRS 138
>d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus
stearothermophilus [TaxId: 1422]}
Length = 198
Score = 28.6 bits (62), Expect = 3.9
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGID 443
G GKTT++ L++ L GI
Sbjct: 28 DGLSRSGKTTLANQLSQTLREQGIS 52
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 29.0 bits (64), Expect = 3.9
Identities = 27/176 (15%), Positives = 52/176 (29%), Gaps = 12/176 (6%)
Query: 401 KSLINALDKKRLHHAYLFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCV 460
+ +D L+ A TG G GK++ +N + GN + G V +
Sbjct: 46 SDALKEIDSSVLNVA--VTGETGSGKSSF-------INTLRGIGNEEEGAAKTGVVEVTM 96
Query: 461 KIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAML 520
+ + + GI + + Y ++I + +
Sbjct: 97 ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDI-DIA 155
Query: 521 KTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENI 576
K + K + + T I F+ +K+L I N + I
Sbjct: 156 KAISMMKKEF-YFVRTKVDSDITNEADGEPQTFDKEKVLQD-IRLNCVNTFRENGI 209
>d1gg4a4 c.72.2.1 (A:99-312) UDP-murNac-tripeptide
D-alanyl-D-alanine-adding enzyme MurF {Escherichia coli
[TaxId: 562]}
Length = 214
Score = 28.9 bits (63), Expect = 4.0
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 3/56 (5%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGID-GNGGITSQPCGKCSVCVKIDNGCFMDYIEM 473
TG+ GKT++ + A L+ G G + G +++ IE+
Sbjct: 8 TGS--SGKTSVKEMTAAILSQCGNTLYTAGNLNNDIGVPMTLLRLTPEYDYAVIEL 61
>d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus
[TaxId: 10335]}
Length = 331
Score = 28.8 bits (64), Expect = 4.0
Identities = 6/26 (23%), Positives = 8/26 (30%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGID 443
G G+GKTT +
Sbjct: 10 LDGAYGIGKTTAAEEFLHHFAITPNR 35
>d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens)
[TaxId: 9606]}
Length = 209
Score = 28.8 bits (63), Expect = 4.2
Identities = 17/117 (14%), Positives = 34/117 (29%), Gaps = 3/117 (2%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAS 477
G GK+T SR L + L G + P + K+ + +++ S
Sbjct: 8 LEGVDRAGKSTQSRKLVEALCAAGHRAE--LLRFPER-STEIGKLLSSYLQKKSDVEDHS 64
Query: 478 TRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFIL 534
+ + + + ++ V+D A + K L
Sbjct: 65 VHLLFSANRWEQVPLIKEKLSQGVTLVVDRYAFSGVAFTGAKENFSLDWCKQPDVGL 121
>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga
maritima [TaxId: 2336]}
Length = 375
Score = 28.8 bits (63), Expect = 4.4
Identities = 48/283 (16%), Positives = 102/283 (36%), Gaps = 39/283 (13%)
Query: 96 HSGSQANQAVFFSVLNPGDTIMGMSLQEGGHLTHGMMLNMSGKWFNSICYGLNKKEKIDY 155
+ QA F ++L+PGD ++ + +++ + ++G N + ++K +
Sbjct: 95 NGAKQALFNAFMALLDPGDEVI---VFSPVWVSYIPQIILAGGTVNVVETFMSKNFQPSL 151
Query: 156 KKVEYLAKKNKPKLIIAGASAYSQYI----DFERFYHIAKNINSYFMVD---------MA 202
++VE L ++I + + + E +AK N Y + D
Sbjct: 152 EEVEGLLVGKTKAVLINSPNNPTGVVYRREFLEGLVRLAKKRNFYIISDEVYDSLVYTDE 211
Query: 203 HYAGLIAAGEYPNPVPFADFITSTTHKSLRGPRGGFILMKKKYKKIINSAVFPGIQGGPL 262
+ L + + V F S +H S+ G R G+++ +K ++ IQ
Sbjct: 212 FTSILDVSEGFDRIVYINGF--SKSH-SMTGWRVGYLISSEKVATAVSK-----IQSHTT 263
Query: 263 MHVIAAKAVAFKEVLKPDFKIYQKQVVKNAKILSKILDQRGIRIV--SGGTKSHIILVDL 320
+ A + L+ D + + + + L + G++ V G + +
Sbjct: 264 SCINTVAQYAALKALEVDNSYMVQTFKERKNFVVERLKKMGVKFVEPEGA---FYLFFKV 320
Query: 321 RNKKITGKIAESILESANIICNKNSIPNDPEKPYFTSG-IRLG 362
R + K E +LE + P + G +RL
Sbjct: 321 RGDDV--KFCERLLEEKKVALV-------PGSAFLKPGFVRLS 354
>d1nmla2 a.3.1.5 (A:167-326) Di-heme cytochrome c peroxidase
{Pseudomonas nautica [TaxId: 2743]}
Length = 160
Score = 28.2 bits (62), Expect = 4.4
Identities = 6/25 (24%), Positives = 12/25 (48%)
Query: 810 KQAIRFYLENQLNLYLFQEEVDDLI 834
++A+ QL L +EV ++
Sbjct: 103 EEAVAVMGTAQLGTELNNDEVKSIV 127
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 28.1 bits (61), Expect = 4.8
Identities = 24/168 (14%), Positives = 44/168 (26%), Gaps = 14/168 (8%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
+F G GKTT+ L+ + D G S + I F +
Sbjct: 17 VFLGLDNAGKTTL-------LHML-KDDRLGQHVPTLHPTSEELTIAGMTFTTFDLGGHI 68
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
R + + I ++ +++ L + + IL
Sbjct: 69 QARRVWKNYLPAINGIVFLVDCADHERLLESKEELDSLMTDETI------ANVPILILGN 122
Query: 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALN 584
+ I+ F L +L + + F S L
Sbjct: 123 KIDRPEAISEERLREMFGLYGQTTGKGSVSLKELNARPLEVFMCSVLK 170
>d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 196
Score = 28.0 bits (61), Expect = 5.7
Identities = 24/158 (15%), Positives = 47/158 (29%), Gaps = 11/158 (6%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAA 476
G G GK T L K + + + + ++ S ++ C + +
Sbjct: 12 FVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVP-- 69
Query: 477 STRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILAT 536
LL I + A ++ID A + E KFIL
Sbjct: 70 ----QEITLALLRNAISDNVKANKHKFLIDGFPRKMDQAIS-----FERDIVESKFILFF 120
Query: 537 TEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKE 574
P+ I + L + + + + + + +
Sbjct: 121 DCPEDIMLERLLERGKTSGRSDDNIESIKKRFNTFKET 158
>d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein
Aq_1292 {Aquifex aeolicus [TaxId: 63363]}
Length = 178
Score = 28.0 bits (61), Expect = 5.7
Identities = 21/134 (15%), Positives = 43/134 (32%), Gaps = 13/134 (9%)
Query: 417 LFTGTRGVGKTTISRILAKCL--NCIGIDGNGGITSQPCGKCSVCVK----------IDN 464
+ TG GVGKTT+ + + + L IG + + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 465 GCFMDYIEMDAASTRGINEMAQLLEQTIYAPINA-RYKIYVIDEVHMLTHHAFNAMLKTL 523
+ + + E+A + + Y R K+ +IDE+ + +
Sbjct: 64 FTSKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVR 123
Query: 524 EEPPKYIKFILATT 537
+ ++AT
Sbjct: 124 QIMHDPNVNVVATI 137
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 28.3 bits (62), Expect = 5.7
Identities = 20/171 (11%), Positives = 42/171 (24%), Gaps = 23/171 (13%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGIDGNGGITS-----------QPCGKCSVCVKIDNGCF 467
G GKT + A I I + G
Sbjct: 18 PGA---GKTKRY-LPAIVREAIKRGLRTLILAPTRVVAAEMEEALRGLPIRYQTPAIRAE 73
Query: 468 MDYIEMDAASTRGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAM--LKTLEE 525
E+ + + Y + ++DE H + A + T E
Sbjct: 74 HTGREIVDLMCHAT-----FTMRLLSPIRVPNYNLIIMDEAHFTDPASIAARGYISTRVE 128
Query: 526 PPKYIKFIL-ATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKEN 575
+ + AT + P + I +++ + ++ + +
Sbjct: 129 MGEAAGIFMTATPPGSRDPFPQSNAPIMDEEREIPERSWNSGHEWVTDFKG 179
>d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1
ATP synthase {Cow (Bos taurus) [TaxId: 9913]}
Length = 285
Score = 28.2 bits (63), Expect = 5.8
Identities = 15/76 (19%), Positives = 25/76 (32%), Gaps = 14/76 (18%)
Query: 427 TTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAASTRGINEM-- 484
SR+L + G G +T+ P ++ G YI + I +
Sbjct: 206 YLHSRLLERAAKMNDAFGGGSLTALP------VIETQAGDVSAYI---PTNVISITDGQI 256
Query: 485 ---AQLLEQTIYAPIN 497
+L + I IN
Sbjct: 257 FLETELFYKGIRPAIN 272
>d1e8ca3 c.72.2.1 (A:104-337) UDP-N-acetylmuramyl tripeptide
synthetase MurE {Escherichia coli [TaxId: 562]}
Length = 234
Score = 28.2 bits (61), Expect = 5.8
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 6/59 (10%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGID----GNGGITSQPCGKCSVCVKIDNGCFMDYIEM 473
TGT GKTT +++LA+ +G G G + +
Sbjct: 11 TGT--NGKTTTTQLLAQWSQLLGEISAVMGTVGNGLLGKVIPTENTTGSAVDVQHELAG 67
>d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis
elegans [TaxId: 6239]}
Length = 277
Score = 28.2 bits (62), Expect = 6.4
Identities = 39/246 (15%), Positives = 78/246 (31%), Gaps = 22/246 (8%)
Query: 397 NHISKSLINALDKKRLHHAYLFTGTRGVGKTTISR-ILAKCLNCIGIDGNGGITSQPCGK 455
+ + K L D G G GK+ I+ L+K IGI+ + + + G
Sbjct: 30 DRVIKKLDEMCDLDSFF--LFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGT 87
Query: 456 CS---VCVKIDNGCFMDYIEMDAASTRGINEMAQLLEQTIYAPINARYK-IYVIDEVHML 511
+ D + + + + +L++ I + R ++V D+V
Sbjct: 88 APKSTFDLFTDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE 147
Query: 512 THHAFNAMLKTLEEPPKYIKFILATTEPQKIPITVLSRCIQFNLKKMLHHDIVNNLC-YI 570
+ L+ L TT +I C + + + + L Y
Sbjct: 148 ETIRWAQELRLR---------CLVTTRDVEISNAASQTCEFIEVTSLEIDECYDFLEAYG 198
Query: 571 LNKENIKFETSALNLIATGAQGSMRDALSLTDQAINYSSEKITLNSMQEMLSIIDQKYLI 630
+ + E LN + G T S E T M ++ + ++ + L+
Sbjct: 199 MPMPVGEKEEDVLNKTIELSSG-----NPATLMMFFKSCEPKTFEKMAQLNNKLESRGLV 253
Query: 631 QILDAL 636
+
Sbjct: 254 GVECIT 259
>d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-2 [TaxId: 9913]}
Length = 190
Score = 28.0 bits (61), Expect = 6.7
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 6/63 (9%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID------GNGGITSQPCGKCSVCVKIDNGCFMDY 470
+ G G GK T + LAK + S+ K + +
Sbjct: 7 VLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVASGSELGKKLKATMDAGKLVSDEM 66
Query: 471 IEM 473
+
Sbjct: 67 VLE 69
>d1kz7a2 b.55.1.1 (A:819-965) Dbl's big sister, Dbs {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 147
Score = 27.4 bits (60), Expect = 6.8
Identities = 13/70 (18%), Positives = 24/70 (34%), Gaps = 1/70 (1%)
Query: 1123 LITKGIQEPYRMFTSRAEYRLNLREDNADLRLTEIGWKLGCVSYKQWKIFEKKREIITKE 1182
L K +E + Y + + +TE K ++ W ++ II
Sbjct: 53 LFCKKREENGEGYEKAPSYSYKQSLNMTAVGITENV-KGDTKKFEIWYNAREEVYIIQAP 111
Query: 1183 LQRLKDTWIN 1192
+K W+N
Sbjct: 112 TPEIKAAWVN 121
>d2f9zc1 d.194.1.3 (C:1-157) Chemoreceptor glutamine deamidase CheD
{Thermotoga maritima [TaxId: 2336]}
Length = 157
Score = 27.4 bits (61), Expect = 6.9
Identities = 8/40 (20%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
Query: 290 KNAKILSKILDQRGIRIVS---GGTKSHIILVDLRNKKIT 326
+N + + K L GI++++ GG ++ + ++ K+
Sbjct: 103 RNVEAVKKHLKDFGIKLLAEDTGGNRARSVEYNIETGKLL 142
>d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae
[TaxId: 727]}
Length = 205
Score = 27.9 bits (61), Expect = 7.1
Identities = 29/212 (13%), Positives = 64/212 (30%), Gaps = 22/212 (10%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGIDGNGGITSQPCGKCSVCVKIDNGCFMDYIEMDAAST 478
TG G GKTTI+ + L +D + +++ +
Sbjct: 8 TGGIGSGKTTIANLFTD-LGVPLVD-----ADVVAREVVAKDSPLLSKIVEHFGAQILTE 61
Query: 479 RGINEMAQLLEQTIYAPINARYKIYVIDEVHMLTHHAFNAMLKTLEEPPKYIKFILATTE 538
+G A L E+ + + ++ A Y F+
Sbjct: 62 QGELNRAALRERVFNHDEDKLWLNNLLHPAIRERMKQKLAEQTA-----PYTLFV----- 111
Query: 539 PQKIPITVLSRCIQFNLKKMLHHDIVNNLCYILNKENIKFETSALNLIATGAQGSMRDAL 598
+P+ + ++ + ++ + + ++ +Q S ++ L
Sbjct: 112 ---VPLLIENKLTALCDRILVVDVSPQTQLARSAQRDNNNFEQIQRIMN--SQVSQQERL 166
Query: 599 SLTDQAI-NYSSEKITLNSMQEMLSIIDQKYL 629
D I N + L +Q+ + + Q YL
Sbjct: 167 KWADDVINNDAELAQNLPHLQQKVLELHQFYL 198
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 27.6 bits (60), Expect = 7.1
Identities = 5/27 (18%), Positives = 10/27 (37%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID 443
+ G GK T ++ + + I
Sbjct: 4 ILLGAPVAGKGTQAQFIMEKYGIPQIS 30
>d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos
taurus), mitochondrial izozyme-3 [TaxId: 9913]}
Length = 189
Score = 27.9 bits (61), Expect = 7.5
Identities = 7/27 (25%), Positives = 10/27 (37%)
Query: 417 LFTGTRGVGKTTISRILAKCLNCIGID 443
G G GK T+S + K +
Sbjct: 10 AIMGAPGSGKGTVSSRITKHFELKHLS 36
>d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 213
Score = 27.6 bits (60), Expect = 7.9
Identities = 5/25 (20%), Positives = 12/25 (48%)
Query: 419 TGTRGVGKTTISRILAKCLNCIGID 443
+G GK+++ + + L +D
Sbjct: 8 SGGTASGKSSVCAKIVQLLGQNEVD 32
>d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence
recognition protein Ffh {Thermus aquaticus [TaxId: 271]}
Length = 207
Score = 27.8 bits (61), Expect = 8.2
Identities = 9/31 (29%), Positives = 14/31 (45%)
Query: 407 LDKKRLHHAYLFTGTRGVGKTTISRILAKCL 437
L + + + G +G GKTT + LA
Sbjct: 4 LPVLKDRNLWFLVGLQGSGKTTTAAKLALYY 34
>d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 197
Score = 27.3 bits (59), Expect = 9.7
Identities = 9/25 (36%), Positives = 10/25 (40%)
Query: 418 FTGTRGVGKTTISRILAKCLNCIGI 442
G G GKTT K N I +
Sbjct: 14 IEGNIGSGKTTYLNHFEKYKNDICL 38
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.137 0.391
Gapped
Lambda K H
0.267 0.0449 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,977,011
Number of extensions: 247227
Number of successful extensions: 984
Number of sequences better than 10.0: 1
Number of HSP's gapped: 929
Number of HSP's successfully gapped: 134
Length of query: 1342
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1246
Effective length of database: 1,089,516
Effective search space: 1357536936
Effective search space used: 1357536936
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (27.2 bits)